BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010961
         (496 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/489 (68%), Positives = 409/489 (83%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD  +  LAR LQS NT HSIH GKQLH+ F KKG++ STL +ANRLLQMY RCG+ TDA
Sbjct: 1   MDLDLQNLARFLQSLNTPHSIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDA 60

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             LFDEMP RNCFSWN MIEG+MK G+KE+S++LF++M  KND+SWN++ SGFAKAGE++
Sbjct: 61  HKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEME 120

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            AR LFN+MP RN + WNSMIH Y RNG  REAVRLFKELN D +++  CD F+LATVIG
Sbjct: 121 IARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIG 180

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           AC DL  ++ GKQIH+ IL++ ++ DSVL SSL+NLYGKCGD +SA+ VLN M+EPDDF 
Sbjct: 181 ACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFS 240

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           LSALI+GYAN G+MNDARR F R +++  V+WNS+ISGY++NNE+ EA LLF+ M++ G+
Sbjct: 241 LSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGL 300

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D STLA++LSACSSL   +HGKQ+H +ACKVG+I D +VASA +D YSK G  +DACK
Sbjct: 301 KVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACK 360

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LFSELK YDTILLN+MITVYS+ G+IEDAK IF TMP+KSLISWNSMIVGLSQNG P+EA
Sbjct: 361 LFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEA 420

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           LDLFC MNKLDLRM++F+L SVISACA+ISSLELGEQ+FAR T++GLDSD++ISTSLVDF
Sbjct: 421 LDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDF 480

Query: 481 YCKCGFIKM 489
           YCKCGFI++
Sbjct: 481 YCKCGFIEI 489



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 210/408 (51%), Gaps = 35/408 (8%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           ++CG    A +L D M   +  + +++I  + K G  + +  + N M + +DFS + LI+
Sbjct: 188 IQCGKQIHARILIDNMELDSVLT-SSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALIT 246

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G+A  G +  AR  F        + WNS+I  YV N    EA  LF ++     + L+ D
Sbjct: 247 GYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQK---KGLKVD 303

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
              LAT++ AC+ L   ++GKQ+H++    GL  D+V+ S+ ++ Y KCG  N A ++ +
Sbjct: 304 FSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFS 363

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            +K  D   L+++I+ Y+N GK+ DA+++F+     S + WNSMI G   N    EAL L
Sbjct: 364 ELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDL 423

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  M +  +  +   L SV+SAC+S+  LE G+Q+   A  VG+  D +++++L+D Y K
Sbjct: 424 FCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCK 483

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG IE  + +F TM     ISWNSM++G 
Sbjct: 484 -------------------------------CGFIEIGRKLFDTMMKSDEISWNSMLMGY 512

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           + NG  +EAL LF  M    +R  + +   V+SAC +   ++ G + F
Sbjct: 513 ATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWF 560



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 153/322 (47%), Gaps = 68/322 (21%)

Query: 4   RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           ++D+  LA +L +C++  +   GKQ+H +  K G++   + +A+  +  Y +CG+  DA 
Sbjct: 301 KVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNV-VASAFIDAYSKCGSLNDAC 359

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            LF E+   +    N+MI                               + ++ +G+++ 
Sbjct: 360 KLFSELKTYDTILLNSMI-------------------------------TVYSNSGKIED 388

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A+ +FN MP ++ I+WNSMI    +NG   EA+ LF  +N      L+ + F L +VI A
Sbjct: 389 AKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNK---LDLRMNRFNLTSVISA 445

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA +++LE G+QI +   V GLD D V+ +SLV+ Y K                      
Sbjct: 446 CASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCK---------------------- 483

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                    CG +   R++FD    +  + WNSM+ GY +N    EAL LF++MR  GV 
Sbjct: 484 ---------CGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVR 534

Query: 302 EDASTLASVLSACSSLGFLEHG 323
               T   VLSAC   G ++ G
Sbjct: 535 PTEITFTGVLSACDHCGLVKEG 556



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 19/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C +  S+ +G+Q+       G L+S   I+  L+  Y +CG       LFD M
Sbjct: 439 LTSVISACASISSLELGEQIFARATVVG-LDSDEVISTSLVDFYCKCGFIEIGRKLFDTM 497

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            + +  SWN+M+ G+   GH  ++L LFN M     +  + ++  ++S     G +K   
Sbjct: 498 MKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGW 557

Query: 124 TLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M     I      ++ M+  + R G   EA+ L K +        + DA + ++V
Sbjct: 558 RWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRM------PFEADASMWSSV 611

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +  C      + G+++   I+   LD + S     L +++   GD+ S+  V  +M+E
Sbjct: 612 LRGCMAHGEKDLGEKVAQQII--ELDPENSGAYVQLSSIFATSGDWESSALVRKVMQE 667


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/489 (67%), Positives = 403/489 (82%), Gaps = 1/489 (0%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TD 59
           MD  +  LARLLQS NTH SIH GKQLHL FLKKG++N+T+ +ANRLLQMY RCG   TD
Sbjct: 1   MDLELRSLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTD 60

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
           A  LFDEMP RNCFSWN MIEG+M++G KE+SL+LF++MPQKND+SWN++ISGFAKAGEL
Sbjct: 61  AHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGEL 120

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             A+ LFN+MPRRN +AWNSMIH Y RNGFAREAV LFKELNS+ +E+   D F+LA+VI
Sbjct: 121 DVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVI 180

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
           GACADL A+EYGKQ+H+ IL++ ++ DSVL SSL+NLY KCG  ++AN VL MM E DDF
Sbjct: 181 GACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDF 240

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
            LSALI GYANCG+M+DA R+F   ++   V+WNS+ISGY++N+E+ +A  L ++M+ N 
Sbjct: 241 SLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNR 300

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           V  D+ST+  +LSACSS G  ++ KQ+HG+ CKVG+ID VIVASA +D YSK   P+DAC
Sbjct: 301 VQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDAC 360

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           KLFSELK YDT+LLN+MIT Y +CGRI DAK+IF TMP+KSLISWNS+IVGL+QN  P+E
Sbjct: 361 KLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLE 420

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           ALD+F  MNKLDLRMD+FSLASVISACA ISSLELGEQVFAR  I GL+SDQ +STSLVD
Sbjct: 421 ALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVD 480

Query: 480 FYCKCGFIK 488
           FYCKCGFI+
Sbjct: 481 FYCKCGFIE 489



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 223/482 (46%), Gaps = 67/482 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C    +I  GKQ+H   L   +   ++ I++ L+ +Y +CG            
Sbjct: 176 LASVIGACADLGAIEYGKQVHARILMDDVELDSVLISS-LINLYAKCG------------ 222

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                              H + +  +  +M + +DFS + LI G+A  G +  A  +F 
Sbjct: 223 -------------------HLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFR 263

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                  + WNS+I  YV N    +A  L  E+ ++   R+Q D+  +  ++ AC+    
Sbjct: 264 TKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNN---RVQVDSSTITVILSACSSTGN 320

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            +Y KQ+H ++   GL    ++ S+ ++ Y KC + N A ++ + +K  D   L+++I+ 
Sbjct: 321 AQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITA 380

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y NCG++ DA+ +F+     S + WNS+I G   N    EAL +F KM +  +  D  +L
Sbjct: 381 YCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSL 440

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ASV+SAC+ +  LE G+QV   A   G+  D  V+++L+D Y K G   +  KLF  +  
Sbjct: 441 ASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIK 500

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D                                +SWNSM++G + NG  +E L LF  M
Sbjct: 501 TDE-------------------------------VSWNSMLMGYATNGYGLETLTLFNEM 529

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGF 486
            +  LR    +   V+SAC +   +E G + F  +     +D      + +VD + + G 
Sbjct: 530 KQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGC 589

Query: 487 IK 488
           +K
Sbjct: 590 LK 591



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 157/356 (44%), Gaps = 78/356 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++  +    KQ+H +  K G+++S + +A+  +  Y +C NP DA  LF E+   
Sbjct: 311 ILSACSSTGNAQYAKQMHGYVCKVGLIDSVI-VASAFIDAYSKCRNPNDACKLFSELKAY 369

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +    N+MI                               + +   G ++ A+ +F  MP
Sbjct: 370 DTVLLNSMI-------------------------------TAYCNCGRIRDAKNIFETMP 398

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ I+WNS+I    +N +  EA+ +F ++N      L+ D F LA+VI ACA +++LE 
Sbjct: 399 SKSLISWNSIIVGLAQNAYPLEALDVFGKMNK---LDLRMDRFSLASVISACACISSLEL 455

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA- 249
           G+Q+ +  ++ GL+ D  + +SLV+ Y KCG   +  ++ + M + D+   ++++ GYA 
Sbjct: 456 GEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYAT 515

Query: 250 ----------------------------------NCGKMNDARRVF-----DRTTDTSSV 270
                                             +CG + + R+ F     D   D    
Sbjct: 516 NGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIE 575

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            ++ M+  +       EAL L   M       D S  +SVL  C + G  + GK+V
Sbjct: 576 HYSCMVDLFARAGCLKEALNLVEHMPFEA---DCSMWSSVLRGCVAHGDKDLGKKV 628



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 36/225 (16%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSK-RGMPSDACKLFS 363
           +LA +L + ++   +  GKQ+H    K G+I+  + +A+ LL  Y++  G  +DA  LF 
Sbjct: 7   SLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFD 66

Query: 364 ELKVYDTILLNTMITVY-------------------------------SSCGRIEDAKHI 392
           E+   +    NTMI  Y                               +  G ++ AK +
Sbjct: 67  EMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKL 126

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM---DKFSLASVISACANI 449
           F  MP ++ ++WNSMI G ++NG   EA+ LF  +N   L     D F LASVI ACA++
Sbjct: 127 FNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADL 186

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            ++E G+QV AR+ +  ++ D ++ +SL++ Y KCG +    Y L
Sbjct: 187 GAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVL 231



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 19/246 (7%)

Query: 1   MDTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D R+D   LA ++ +C    S+ +G+Q+    +  G L S   ++  L+  Y +CG   
Sbjct: 431 LDLRMDRFSLASVISACACISSLELGEQVFARAIITG-LESDQAVSTSLVDFYCKCGFIE 489

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFA 114
           +   LFD M + +  SWN+M+ G+   G+  ++L LFN M Q      D ++  ++S   
Sbjct: 490 NGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACD 549

Query: 115 KAGELKTARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
             G ++  R  FN M     I      ++ M+  + R G  +EA+ L + +        +
Sbjct: 550 HCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHM------PFE 603

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D  + ++V+  C      + GK++   I+    +  S     L  ++   GD+ S+  V
Sbjct: 604 ADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAY-VQLSGIFATSGDWESSALV 662

Query: 230 LNMMKE 235
             +M E
Sbjct: 663 RKIMTE 668


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/488 (67%), Positives = 393/488 (80%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC +  +A
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FSWN++ISGFAK G L+
Sbjct: 62  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            AR LFN+MP +N IAWNSMIH Y  NG  +EAV LFK+L+ + +ER   D F+LATV+G
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           AC +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F 
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           LSALISGYA+CG+MNDARR+F   ++   V+WNSMISGY++NNE  EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGV 301

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
            ED ST ASVLSACS+LG ++ G QVH H  KVG  +D+I+ SAL+D YSK   P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN  PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481

Query: 481 YCKCGFIK 488
           YCKCG ++
Sbjct: 482 YCKCGLVE 489



 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 225/436 (51%), Gaps = 36/436 (8%)

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF 113
           CG    A ++ DE+   +    ++++  + K G  + +  + N+M + + FS + LISG+
Sbjct: 191 CGKQIHARIVVDEVEFDSVLG-SSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGY 249

Query: 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           A  G +  AR +F        + WNSMI  YV N  A EA+ LF  +    V   Q D  
Sbjct: 250 ASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGV---QEDYS 306

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
             A+V+ AC+ L  ++ G Q+H+H+   G   D ++ S+LV++Y KC   + A ++ + +
Sbjct: 307 TFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDL 366

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           +  D   L+++I+ Y+NCG+++DAR++FD     S + WNSMI G+  N    EAL LF 
Sbjct: 367 QAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFC 426

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M + G+  D  +LA V+SAC+S+  LE G+Q+   A  +G+  D I++++L+D Y K  
Sbjct: 427 EMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCK-- 484

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        CG +E  + +F  M     + WNSM++G + 
Sbjct: 485 -----------------------------CGLVEHGRKLFDRMMKSDEVPWNSMLMGYAT 515

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG  IEAL++F  M  + ++    +   V+SAC +   +E G + F  + +    +  I 
Sbjct: 516 NGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIE 575

Query: 474 STS-LVDFYCKCGFIK 488
             S +VD Y + G ++
Sbjct: 576 HYSCMVDLYARAGLLE 591



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 217/433 (50%), Gaps = 73/433 (16%)

Query: 60   ALLLFDEMPR----RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115
             LL FD + +     + F  N  ++ + +LG    SL++F  +  KN  SWN+ +  F +
Sbjct: 729  TLLEFDMLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVR 788

Query: 116  AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
             GEL+ AR +F++MP+R+ ++WN+MI  YV  G   +A R F E+       ++   F  
Sbjct: 789  FGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQK---AGIRPSGFTY 845

Query: 176  ATVIGACADLAALEYGKQIHSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVLNMMK 234
            +T++   +       GKQIH+ ++ NG+D  + V+G+SL+ +YGK G  + A  V   M+
Sbjct: 846  STLLSFVSSACR---GKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITME 902

Query: 235  EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
            E D    ++LI    +CGK                       SGY        AL  F  
Sbjct: 903  ELDIISWNSLI---WSCGK-----------------------SGY-----QNLALRQFVL 931

Query: 295  MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
            MR  G   D  T+++V++ CS+L  LE G+Q+     +VG + + IV+SA +D +SK   
Sbjct: 932  MRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNR 991

Query: 355  PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              D+ ++F E+  +D++L N MI+ Y                      +W+    G  +N
Sbjct: 992  LEDSVRVFEEIYQWDSVLCNAMISSY----------------------AWH----GFGEN 1025

Query: 415  GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
                 AL LF    + +LR  +F+L+ V+SA + +  ++ G Q+ + V   GL+SD I++
Sbjct: 1026 -----ALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVA 1080

Query: 475  TSLVDFYCKCGFI 487
            +SLV+ Y K G I
Sbjct: 1081 SSLVEMYAKFGLI 1093



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 186/416 (44%), Gaps = 99/416 (23%)

Query: 6   DY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           DY   A +L +C+T   I  G Q+H H  K G  N  + I + L+ MY +C  P DA  L
Sbjct: 304 DYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDII-IDSALVDMYSKCRRPDDACKL 362

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           F ++   +    N+MI                               + ++  G +  AR
Sbjct: 363 FSDLQAYDTILLNSMI-------------------------------TVYSNCGRIDDAR 391

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+ MP ++ I+WNSMI  + +N    EA+ LF E+N      L+ D F LA VI ACA
Sbjct: 392 QIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNK---LGLRMDKFSLAGVISACA 448

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            +++LE G+QI +   + GL+FD ++ +SLV+ Y K                        
Sbjct: 449 SISSLELGEQIFARATIIGLEFDQIISTSLVDFYCK------------------------ 484

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                  CG +   R++FDR   +  V WNSM+ GY +N    EAL +F +MR  GV   
Sbjct: 485 -------CGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPT 537

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T   VLSAC   G +E G++   +A K             LD +   G+   +C    
Sbjct: 538 DITFVGVLSACDHCGLVEEGRKWF-YAMK-------------LDYHINPGIEHYSC---- 579

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPI 418
                       M+ +Y+  G +EDA ++   MP K+  S W+S++ G   +G+ I
Sbjct: 580 ------------MVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNI 623


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/488 (67%), Positives = 393/488 (80%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC +  +A
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FSWN++ISGFAK G L+
Sbjct: 62  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 121

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            AR LFN+MP +N IAWNSMIH Y  NG  +EAV LFK+L+ + +ER   D F+LATV+G
Sbjct: 122 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 181

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           AC +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F 
Sbjct: 182 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 241

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           LSALISGYA+CG+MNDARR+F   ++   V+WNSMISGY++NNE  EAL LF+ MRR GV
Sbjct: 242 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 301

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
            ED ST ASVLSACS+LG ++ G QVH H  KVG  +D+I+ SAL+D YSK   P DACK
Sbjct: 302 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 361

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LFS+L+ YDTILLN+MITVYS+CGRI+DA+ IF TMP+KSLISWNSMIVG SQN  PIEA
Sbjct: 362 LFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEA 421

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 422 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 481

Query: 481 YCKCGFIK 488
           YCKCG ++
Sbjct: 482 YCKCGLVE 489



 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 226/438 (51%), Gaps = 36/438 (8%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           + CG    A ++ DE+   +    ++++  + K G  + +  + N+M + + FS + LIS
Sbjct: 189 LDCGKQIHARIVVDEVEFDSVLG-SSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALIS 247

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G+A  G +  AR +F        + WNSMI  YV N  A EA+ LF  +    V+    D
Sbjct: 248 GYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQE---D 304

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
               A+V+ AC+ L  ++ G Q+H+H+   G   D ++ S+LV++Y KC   + A ++ +
Sbjct: 305 YSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFS 364

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            ++  D   L+++I+ Y+NCG+++DAR++FD     S + WNSMI G+  N    EAL L
Sbjct: 365 DLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDL 424

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M + G+  D  +LA V+SAC+S+  LE G+Q+   A  +G+  D I++++L+D Y K
Sbjct: 425 FCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCK 484

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +E  + +F  M     + WNSM++G 
Sbjct: 485 -------------------------------CGLVEHGRKLFDRMMKSDEVPWNSMLMGY 513

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           + NG  IEAL++F  M  + ++    +   V+SAC +   +E G + F  + +    +  
Sbjct: 514 ATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPG 573

Query: 472 IISTS-LVDFYCKCGFIK 488
           I   S +VD Y + G ++
Sbjct: 574 IEHYSCMVDLYARAGLLE 591



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 186/416 (44%), Gaps = 99/416 (23%)

Query: 6   DY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           DY   A +L +C+T   I  G Q+H H  K G  N  + I + L+ MY +C  P DA  L
Sbjct: 304 DYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDII-IDSALVDMYSKCRRPDDACKL 362

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           F ++   +    N+MI                               + ++  G +  AR
Sbjct: 363 FSDLQAYDTILLNSMI-------------------------------TVYSNCGRIDDAR 391

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+ MP ++ I+WNSMI  + +N    EA+ LF E+N      L+ D F LA VI ACA
Sbjct: 392 QIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNK---LGLRMDKFSLAGVISACA 448

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            +++LE G+QI +   + GL+FD ++ +SLV+ Y K                        
Sbjct: 449 SISSLELGEQIFARATIIGLEFDQIISTSLVDFYCK------------------------ 484

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                  CG +   R++FDR   +  V WNSM+ GY +N    EAL +F +MR  GV   
Sbjct: 485 -------CGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPT 537

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T   VLSAC   G +E G++   +A K             LD +   G+   +C    
Sbjct: 538 DITFVGVLSACDHCGLVEEGRKWF-YAMK-------------LDYHINPGIEHYSC---- 579

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPI 418
                       M+ +Y+  G +EDA ++   MP K+  S W+S++ G   +G+ I
Sbjct: 580 ------------MVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNI 623


>gi|302142722|emb|CBI19925.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 312/488 (63%), Positives = 374/488 (76%), Gaps = 21/488 (4%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  LAR L SCN + SI+ G+ LH+ FLK G+L+S L I NRLLQMY RC +  +A
Sbjct: 38  VDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 97

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             LF+EMP+RNCFSWN MIEG++K G K KSL+LF+ MP K+ FSWN++ISGFAK G L+
Sbjct: 98  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLE 157

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            AR LFN+MP +N IAWNSMIH Y  NG  +EAV LFK+L+ + +ER   D F+LATV+G
Sbjct: 158 VARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVG 217

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           AC +L AL+ GKQIH+ I+V+ ++FDSVLGSSLVNLYGKCGD +SAN VLN+MKEPD F 
Sbjct: 218 ACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFS 277

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           LSALISGYA+CG+MNDARR+F   ++   V+WNSMISGY++NNE  EAL LF+ MRR GV
Sbjct: 278 LSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGV 337

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
            ED ST ASVLSACS+LG ++ G QVH H  KVG  +D+I+ SAL+D YSK   P DACK
Sbjct: 338 QEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACK 397

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LFS+L+ YDTILLN+MITV                     LISWNSMIVG SQN  PIEA
Sbjct: 398 LFSDLQAYDTILLNSMITV---------------------LISWNSMIVGFSQNACPIEA 436

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           LDLFC MNKL LRMDKFSLA VISACA+ISSLELGEQ+FAR TIIGL+ DQIISTSLVDF
Sbjct: 437 LDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDF 496

Query: 481 YCKCGFIK 488
           YCKCG ++
Sbjct: 497 YCKCGLVE 504



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 195/408 (47%), Gaps = 56/408 (13%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           + CG    A ++ DE+   +    ++++  + K G  + +  + N+M + + FS + LIS
Sbjct: 225 LDCGKQIHARIVVDEVEFDSVLG-SSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALIS 283

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G+A  G +  AR +F        + WNSMI  YV N  A EA+ LF  +    V+    D
Sbjct: 284 GYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQE---D 340

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
               A+V+ AC+ L  ++ G Q+H+H+   G   D ++ S+LV++Y KC   + A ++ +
Sbjct: 341 YSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFS 400

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            ++  D   L+++I                     T  + WNSMI G+  N    EAL L
Sbjct: 401 DLQAYDTILLNSMI---------------------TVLISWNSMIVGFSQNACPIEALDL 439

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M + G+  D  +LA V+SAC+S+  LE G+Q+   A  +G+  D I++++L+D Y K
Sbjct: 440 FCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCK 499

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G+     KLF  +   D +  N+M                               ++G 
Sbjct: 500 CGLVEHGRKLFDRMMKSDEVPWNSM-------------------------------LMGY 528

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           + NG  IEAL++F  M  + ++    +   V+SAC +   +E G + +
Sbjct: 529 ATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKCY 576



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 165/400 (41%), Gaps = 115/400 (28%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C    ++  GKQ+H   +   +   ++ + + L+ +Y +CG+   A  + + M
Sbjct: 212 LATVVGACTNLGALDCGKQIHARIVVDEVEFDSV-LGSSLVNLYGKCGDIDSANHVLNLM 270

Query: 68  PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
              + FS                               WN+MI G++      ++L+LFN
Sbjct: 271 KEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFN 330

Query: 97  VMPQKN---DFSW------------------------------------NMLISGFAKAG 117
            M +K    D+S                                     + L+  ++K  
Sbjct: 331 NMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCR 390

Query: 118 ELKTARTLFNDMPRRNAI----------AWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
               A  LF+D+   + I          +WNSMI  + +N    EA+ LF E+N      
Sbjct: 391 RPDDACKLFSDLQAYDTILLNSMITVLISWNSMIVGFSQNACPIEALDLFCEMNK---LG 447

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           L+ D F LA VI ACA +++LE G+QI +   + GL+FD ++ +SLV+ Y K        
Sbjct: 448 LRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCK-------- 499

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                  CG +   R++FDR   +  V WNSM+ GY +N    E
Sbjct: 500 -----------------------CGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIE 536

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           AL +F +MR  GV     T   VLSAC   G +E G++ +
Sbjct: 537 ALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKCY 576


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/484 (59%), Positives = 367/484 (75%), Gaps = 5/484 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L R LQS +T   +  G+QLH+ FLK GILNS++ +ANRLLQ+Y RC N  DA  LFDEM
Sbjct: 6   LVRTLQSWST---LREGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEM 62

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P+ N FSWN +++  +  GH   +L LFN MP K  FSWNM++S FAK+G L+ A +LFN
Sbjct: 63  PQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFN 122

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP +N + WNS+IH Y R+G   +A+ LFK +N D  + +  DAF+LAT +GACAD  A
Sbjct: 123 AMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLA 182

Query: 188 LEYGKQIHSHILVNG--LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
           L  GKQ+H+ + V+G  L+ D VL SSL+NLYGKCGD +SA ++++ +++ D+F LSALI
Sbjct: 183 LNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALI 242

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           SGYAN G+M +AR VFD   D  +V+WNS+ISGY+SN E+ EA+ LF  M RNGV  DAS
Sbjct: 243 SGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDAS 302

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
            +A++LSA S L  +E  KQ+H +ACK GV  D++VAS+LLD YSK   P +ACKLFSEL
Sbjct: 303 AVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSEL 362

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
           K YDTILLNTMITVYS+CGRIEDAK IF TMP+K+LISWNS++VGL+QN  P EAL++F 
Sbjct: 363 KEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFS 422

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            MNKLDL+MD+FS ASVISACA  SSLELGEQVF +   IGL+SDQIISTSLVDFYCKCG
Sbjct: 423 QMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCG 482

Query: 486 FIKM 489
           F+++
Sbjct: 483 FVEI 486



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/414 (30%), Positives = 208/414 (50%), Gaps = 41/414 (9%)

Query: 50  MYMRCGNPTDALLLFD----EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS 105
           + + CG    A +  D    E+ R  C   +++I  + K G  + + ++ + +   ++FS
Sbjct: 181 LALNCGKQVHARVFVDGMGLELDRVLC---SSLINLYGKCGDLDSAARIVSFVRDVDEFS 237

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            + LISG+A AG ++ AR++F+      A+ WNS+I  YV NG   EAV LF  +   L 
Sbjct: 238 LSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAM---LR 294

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             +Q DA  +A ++ A + L  +E  KQ+H +    G+  D V+ SSL++ Y KC     
Sbjct: 295 NGVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCE 354

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           A ++ + +KE D   L+ +I+ Y+NCG++ DA+ +F+     + + WNS++ G   N   
Sbjct: 355 ACKLFSELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACP 414

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           +EAL +F +M +  +  D  + ASV+SAC+    LE G+QV G A  +G+  D I++++L
Sbjct: 415 SEALNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSL 474

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y K G      K+F  +   D +  NT                              
Sbjct: 475 VDFYCKCGFVEIGRKVFDGMVKTDEVSWNT------------------------------ 504

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            M++G + NG  IEAL LFC M    +     +   V+SAC +   +E G  +F
Sbjct: 505 -MLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLF 557



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 25/249 (10%)

Query: 1   MDTRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D ++D    A ++ +C    S+ +G+Q+    +  G L S   I+  L+  Y +CG   
Sbjct: 427 LDLKMDRFSFASVISACACRSSLELGEQVFGKAITIG-LESDQIISTSLVDFYCKCGFVE 485

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISG 112
               +FD M + +  SWN M+ G+   G+  ++L LF       V P    F+   ++S 
Sbjct: 486 IGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFT--GVLSA 543

Query: 113 FAKAGELKTARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
              +G ++  R LF+ M     I      ++ M+  + R G+  EA+ L +E+       
Sbjct: 544 CDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEM------P 597

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSA 226
            Q DA +  +V+  C        GK     I+   L+ ++      L N+    GD+  +
Sbjct: 598 FQADANMWLSVLRGCIAHGNKTIGKMAAEQII--QLEPENTGAYIQLSNILASSGDWEGS 655

Query: 227 NQVLNMMKE 235
             V  +M++
Sbjct: 656 ALVRELMRD 664


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/482 (58%), Positives = 365/482 (75%), Gaps = 7/482 (1%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           Y  RLLQSC++ +   + +Q +   LKKG L+S + +AN LLQMY R G    A  LFDE
Sbjct: 28  YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           MP RN FSWN MIEG+M  G K  SL+ F++MP+++ +SWN+++SGFAKAGEL  AR LF
Sbjct: 88  MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           N MP ++ +  NS++H Y+ NG+A EA+RLFKELN         DA  L TV+ ACA+L 
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELN------FSADAITLTTVLKACAELE 201

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD   A+ +L  ++EPDD  LSALIS
Sbjct: 202 ALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALIS 261

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GYANCG++N++R +FDR ++   ++WNSMISGYI+NN   EAL+LF++MR N   ED+ T
Sbjct: 262 GYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRT 320

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           LA+V++AC  LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++
Sbjct: 321 LAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE 380

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
            YDTILLN+MI VY SCGRI+DAK +F  + NKSLISWNSM  G SQNG  +E L+ F  
Sbjct: 381 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQ 440

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M+KLDL  D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCGF
Sbjct: 441 MHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGF 500

Query: 487 IK 488
           ++
Sbjct: 501 VE 502



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 236/482 (48%), Gaps = 68/482 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C    ++  GKQ+H   L  G+   +  + + L+ +Y +CG+   A  + +++
Sbjct: 190 LTTVLKACAELEALKCGKQIHAQILIGGVECDS-KMNSSLVNVYAKCGDLRMASYMLEQI 248

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                           + +D S + LISG+A  G +  +R LF+
Sbjct: 249 R-------------------------------EPDDHSLSALISGYANCGRVNESRGLFD 277

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
               R  I WNSMI  Y+ N    EA+ LF E+ ++  E    D+  LA VI AC  L  
Sbjct: 278 RKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETRE----DSRTLAAVINACIGLGF 333

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE GKQ+H H    GL  D V+ S+L+++Y KCG    A ++ + ++  D   L+++I  
Sbjct: 334 LETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKV 393

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y +CG+++DA+RVF+R  + S + WNSM +G+  N    E L  FH+M +  +  D  +L
Sbjct: 394 YFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSL 453

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +SV+SAC+S+  LE G+QV   A  VG+  D +V+S+L+D Y K G      ++F  +  
Sbjct: 454 SSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVK 513

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D +  N+MI+ Y++                               NG   EA+DLF  M
Sbjct: 514 SDEVPWNSMISGYAT-------------------------------NGQGFEAIDLFKKM 542

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGF 486
           +   +R  + +   V++AC     +E G ++F  + +  G   D+   + +VD   + G+
Sbjct: 543 SVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGY 602

Query: 487 IK 488
           ++
Sbjct: 603 VE 604



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 188/410 (45%), Gaps = 78/410 (19%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           +TR D   LA ++ +C     +  GKQ+H H  K G+++  + +A+ LL MY +CG+P +
Sbjct: 313 ETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIV-VASTLLDMYSKCGSPME 371

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
           A  LF E+   +    N+MI+ +                                  G +
Sbjct: 372 ACKLFSEVESYDTILLNSMIKVYFS-------------------------------CGRI 400

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             A+ +F  +  ++ I+WNSM + + +NG   E +  F +++      L  D   L++VI
Sbjct: 401 DDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHK---LDLPTDEVSLSSVI 457

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA +++LE G+Q+ +   + GLD D V+ SSL++LY K                    
Sbjct: 458 SACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCK-------------------- 497

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                      CG +   RRVFD    +  V WNSMISGY +N +  EA+ LF KM   G
Sbjct: 498 -----------CGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAG 546

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKV--GVIDDVIVASALLDTYSKRGMPSD 357
           +     T   VL+AC+  G +E G+++   + KV  G + D    S ++D  ++ G   +
Sbjct: 547 IRPTQITFMVVLTACNYCGLVEEGRKLF-ESMKVDHGFVPDKEHFSCMVDLLARAGYVEE 605

Query: 358 ACKLFSEL------KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           A  L  E+       ++ +IL   +   Y + G+ + A+ I    P  S+
Sbjct: 606 AINLVEEMPFDVDGSMWSSILRGCVANGYKAMGK-KAAEKIIELEPENSV 654



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 35/219 (15%)

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELKVY 368
           +L +CSS       +Q +G   K G +   VIVA+ LL  YS+ G    A  LF E+   
Sbjct: 32  LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91

Query: 369 DTILLNTMITVY-------------------------------SSCGRIEDAKHIFRTMP 397
           +    NTMI  Y                               +  G +  A+ +F  MP
Sbjct: 92  NYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP 151

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            K +++ NS++ G   NG   EAL LF    +L+   D  +L +V+ ACA + +L+ G+Q
Sbjct: 152 EKDVVTLNSLLHGYILNGYAEEALRLF---KELNFSADAITLTTVLKACAELEALKCGKQ 208

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           + A++ I G++ D  +++SLV+ Y KCG ++M  Y L Q
Sbjct: 209 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQ 247



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 108/237 (45%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C +  S+ +G+Q+       G L+S   +++ L+ +Y +CG       +FD M
Sbjct: 453 LSSVISACASISSLELGEQVFARATIVG-LDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM 511

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            + +   WN+MI G+   G   +++ LF  M     +    ++ ++++     G ++  R
Sbjct: 512 VKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGR 571

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF  M   +        ++ M+    R G+  EA+ L +E+  D+      D  + +++
Sbjct: 572 KLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDV------DGSMWSSI 625

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +  C        GK+    I+    + +SV    L  ++   GD+ S+  V  +M+E
Sbjct: 626 LRGCVANGYKAMGKKAAEKIIELEPE-NSVAYVQLSAIFATSGDWESSALVRKLMRE 681


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/472 (59%), Positives = 360/472 (76%), Gaps = 2/472 (0%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +I   +QLHL  LK G L+S++   NRLLQ+Y R G+  DA  LFDEMP+ N FSWN +I
Sbjct: 9   TIREARQLHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLI 68

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           E  + LGH+ KSL+LF+ MP K  +SWN+++S  +K+G+L+ A+ LFN MP +N + WNS
Sbjct: 69  EAHINLGHRNKSLELFHAMPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNS 128

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           MIH Y R+G+ R ++ LFKE+N D +E +  DAF+L+TV GACADL AL+ GKQ+H+ + 
Sbjct: 129 MIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVF 188

Query: 200 VNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           ++G +F  D VL SS+VN YGKCGD +SA +V+  +KE DDF LSAL+SGYAN G+M+DA
Sbjct: 189 IDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDA 248

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R+VFD   D  SV+WNS+ISGY+SN E+ EAL LF+KMRRNGV  D S +A++LS  SSL
Sbjct: 249 RKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSL 308

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             +E  KQ+H HA K+G   D++VAS LLD YSK   P D+CKLF ELKVYD ILLNTMI
Sbjct: 309 LNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMI 368

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           TVY +CGR+EDAK +F +MPNK+LISWNS++VGL+QN  P EALD F  MNKLD++MDKF
Sbjct: 369 TVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKF 428

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           S ASVISACA  SSLELGEQ+F +   +GL+SDQII TSLVDFYCKCG ++M
Sbjct: 429 SFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEM 480



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 215/461 (46%), Gaps = 78/461 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEM---P----RRNCFSWNAM----------------- 78
           + N ++  Y R G P ++LLLF EM   P     R+ F  + +                 
Sbjct: 125 VWNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVH 184

Query: 79  ----IEGFM----------------KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE 118
               I+GF                 K G  + + ++   + + +DFS + L+SG+A AG 
Sbjct: 185 ARVFIDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGR 244

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +  AR +F++     ++ WNS+I  YV NG   EA+ LF ++  + V     D   +A +
Sbjct: 245 MSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGV---WGDFSAVANI 301

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +   + L  +E  KQ+H H    G   D V+ S+L++ Y KC   + + ++ + +K  D 
Sbjct: 302 LSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDA 361

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
             L+ +I+ Y NCG++ DA+ VF+   + + + WNS++ G   N   +EAL  F  M + 
Sbjct: 362 ILLNTMITVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKL 421

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D  + ASV+SAC+    LE G+Q+ G A  +G+  D I+ ++L+D Y K       
Sbjct: 422 DVKMDKFSFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCK------- 474

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                   CG +E  + +F  M     +SWN+M++G + NG  I
Sbjct: 475 ------------------------CGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGI 510

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           EAL LF  M    +R    +   ++SAC +   +E G  +F
Sbjct: 511 EALTLFNEMGYSGVRPSAITFTGILSACDHCGLVEEGRDLF 551



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 18/210 (8%)

Query: 1   MDTRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D ++D    A ++ +C    S+ +G+QL    +  G L S   I   L+  Y +CG   
Sbjct: 421 LDVKMDKFSFASVISACAIKSSLELGEQLFGKAITLG-LESDQIICTSLVDFYCKCGLVE 479

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFA 114
               +FD M + +  SWN M+ G+   G+  ++L LFN M     + +  ++  ++S   
Sbjct: 480 MGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFTGILSACD 539

Query: 115 KAGELKTARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
             G ++  R LF  M     I      ++ M+  + R G   EA+ L +E+        Q
Sbjct: 540 HCGLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEM------PFQ 593

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHIL 199
            DA +  +V+  C        GK     I+
Sbjct: 594 ADANMWLSVLRGCVSHGNKTIGKMAAEKII 623


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/482 (57%), Positives = 363/482 (75%), Gaps = 7/482 (1%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           Y  RLLQSC+  +   + +Q +  FLKKG ++S + +AN LLQ+Y R G    A  LFDE
Sbjct: 8   YYVRLLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDE 67

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           MP RN FSWN MIEG+M  G K  SL+ F++MP+++ +SWN++ISGFAKAGEL  AR LF
Sbjct: 68  MPERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLF 127

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           + MP ++ +  NS++H Y+ NG++ EA+RLFKEL      +   DA  L TV+ ACA+L 
Sbjct: 128 DAMPEKDVVTLNSLLHGYILNGYSEEALRLFKEL------KFSADAITLTTVLKACAELE 181

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD   A+ +L  + EPDD  LS LIS
Sbjct: 182 ALKRGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLIS 241

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GYANCG++N++RR+FDR ++   ++WNSMISGYI+NN   EAL+LF++MR N   ED+ T
Sbjct: 242 GYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNEMR-NETWEDSRT 300

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           LA+V++AC  LGFLE GKQ+H HACK G++DD++VAS LLD YSK G P +ACKLFSE++
Sbjct: 301 LAAVINACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVE 360

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
            YDTILLN+MI VY SCGRI+DAK +F  + NKSLISWNSM  G SQNG P+E L+ F  
Sbjct: 361 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQ 420

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M+KLDL  D+ SL+SVISACA+ISSL LGEQVFAR TI+GLDSDQI+S+SL+D YCKCG 
Sbjct: 421 MHKLDLPTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGS 480

Query: 487 IK 488
           ++
Sbjct: 481 VE 482



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 234/482 (48%), Gaps = 68/482 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C    ++  GKQ+H   L  G+   +  + + L+ +Y +CG+   A  + +++
Sbjct: 170 LTTVLKACAELEALKRGKQIHAQILIGGVECDS-KMNSSLVNVYAKCGDLRMASYMLEQI 228

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                           + +D S + LISG+A  G +  +R LF+
Sbjct: 229 G-------------------------------EPDDHSLSTLISGYANCGRVNESRRLFD 257

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
               R  I WNSMI  Y+ N    EA+ LF E+ ++  E    D+  LA VI AC  L  
Sbjct: 258 RKSNRCVILWNSMISGYIANNMKFEALVLFNEMRNETWE----DSRTLAAVINACIGLGF 313

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE GKQ+H H    GL  D V+ S+L+++Y KCG    A ++ + ++  D   L+++I  
Sbjct: 314 LETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKV 373

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y +CG+++DA+RVF+R  + S + WNSM +G+  N    E L  F +M +  +  D  +L
Sbjct: 374 YFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDLPTDEVSL 433

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +SV+SAC+S+  L  G+QV   A  VG+  D IV+S+L+D Y K G   +  ++F  +  
Sbjct: 434 SSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGSVENGRRVFDTMVK 493

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D +  N+MI+ Y++                               NG   EA+DLF  M
Sbjct: 494 SDEVPWNSMISGYAT-------------------------------NGHGFEAIDLFKKM 522

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGF 486
           +   +R  + +   V++AC     +E G  +F  + +  G   D+   + +VD   + G+
Sbjct: 523 SIAGIRPTQITFMVVLTACNYCGLVEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLARAGY 582

Query: 487 IK 488
           ++
Sbjct: 583 VE 584



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 182/402 (45%), Gaps = 76/402 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C     +  GKQ+H H  K G+++  + +A+ LL MY +CG+P +A  LF E+
Sbjct: 301 LAAVINACIGLGFLETGKQMHCHACKFGLVDDIV-VASTLLDMYSKCGSPMEACKLFSEV 359

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              +    N+MI+ +                                  G +  A+ +F 
Sbjct: 360 ESYDTILLNSMIKVYFS-------------------------------CGRIDDAKRVFE 388

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  ++ I+WNSM + + +NG   E +  F +++      L  D   L++VI ACA +++
Sbjct: 389 RIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHK---LDLPTDEVSLSSVISACASISS 445

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q+ +   + GLD D ++ SSL++LY K                            
Sbjct: 446 LGLGEQVFARATIVGLDSDQIVSSSLIDLYCK---------------------------- 477

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              CG + + RRVFD    +  V WNSMISGY +N    EA+ LF KM   G+     T 
Sbjct: 478 ---CGSVENGRRVFDTMVKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITF 534

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV--GVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
             VL+AC+  G +E G+ +   A K+  G + D    S ++D  ++ G   +A  L  E+
Sbjct: 535 MVVLTACNYCGLVEEGRLLF-EAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEM 593

Query: 366 K------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
                  ++ ++L   +   Y + G+ + A+ I    P  S+
Sbjct: 594 PFDADASMWSSVLRGCVANGYKAMGK-KVAEKIIELEPENSV 634



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 35/219 (15%)

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELKVY 368
           +L +CS+       +Q +G   K G I   VIVA+ LL  YS+ G    A  LF E+   
Sbjct: 12  LLQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDEMPER 71

Query: 369 DTILLNTMITVY-------------------------------SSCGRIEDAKHIFRTMP 397
           +    NTMI  Y                               +  G +  A+ +F  MP
Sbjct: 72  NYFSWNTMIEGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLFDAMP 131

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            K +++ NS++ G   NG   EAL LF    +L    D  +L +V+ ACA + +L+ G+Q
Sbjct: 132 EKDVVTLNSLLHGYILNGYSEEALRLF---KELKFSADAITLTTVLKACAELEALKRGKQ 188

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           + A++ I G++ D  +++SLV+ Y KCG ++M  Y L Q
Sbjct: 189 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQ 227



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 112/237 (47%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C +  S+ +G+Q+       G L+S   +++ L+ +Y +CG+  +   +FD M
Sbjct: 433 LSSVISACASISSLGLGEQVFARATIVG-LDSDQIVSSSLIDLYCKCGSVENGRRVFDTM 491

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            + +   WN+MI G+   GH  +++ LF  M     +    ++ ++++     G ++  R
Sbjct: 492 VKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCGLVEEGR 551

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF  M   +        ++ M+    R G+  EA+ L +E+  D       DA + ++V
Sbjct: 552 LLFEAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEMPFD------ADASMWSSV 605

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +  C        GK++   I+    + +SV    L  ++   GD+ S+  V  +M+E
Sbjct: 606 LRGCVANGYKAMGKKVAEKIIELEPE-NSVAYVQLSAIFATSGDWESSALVRKLMRE 661


>gi|108712115|gb|ABF99910.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215767226|dbj|BAG99454.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 684

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/488 (46%), Positives = 325/488 (66%), Gaps = 23/488 (4%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P +NCFS+N++I   +       +L +F  MP++N FSWN +I+G    G L  AR+L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC----------DAFILAT 177
           +MP ++ +A N+++H YVR G A EA  L + +        QC          D F+LAT
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVG-------QCSGADASSPWNDPFVLAT 180

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           ++GACAD    ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D
Sbjct: 181 IVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVD 240

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
           +F LSALI GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R
Sbjct: 241 EFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMR 300

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           + VL D+ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  D
Sbjct: 301 SDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWED 360

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           AC+ F EL+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG  
Sbjct: 361 ACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHA 420

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            +AL LFC M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL
Sbjct: 421 RDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSL 480

Query: 478 VDFYCKCG 485
           +D YCKCG
Sbjct: 481 IDLYCKCG 488



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 5/326 (1%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           A++  + K G  + +  + N + Q ++FS + LI G+A  G L  A  LF+     +   
Sbjct: 215 ALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAM 274

Query: 137 WNSMIHCYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           WNS+I          +A  LF + + SD++     D+   A+++  C     +  G+QIH
Sbjct: 275 WNSLISGCAFACCGNDAFALFARMMRSDVLP----DSSTYASILNVCGFSVMVNPGQQIH 330

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
              L  G   D ++ S+L++ Y KCG +  A +    ++  D   L+++I+ Y+NCG++ 
Sbjct: 331 GCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRFHDTIVLNSMITVYSNCGQIE 390

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARR+FD  T  S + WNSM+ G   N    +AL LF +M R G+  D   +AS LSA S
Sbjct: 391 EARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLFCEMHRLGLRLDKVAIASALSASS 450

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  +  G+Q+   A  +G+  D +VAS+L+D Y K G  ++ C++F E+   D +L N+
Sbjct: 451 SICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNS 510

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSL 401
           M+  ++S G   +A  +   M  K +
Sbjct: 511 MLIGHASNGYGHEALELLELMKTKGI 536



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 66/315 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     ++ G+Q+H   LK G +N  + +A+ L+  Y +CG   DA   F E+ 
Sbjct: 311 ASILNVCGFSVMVNPGQQIHGCGLKCGAVNDII-VASALIDFYSKCGLWEDACRAFRELR 369

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +    N+MI                               + ++  G+++ AR +F+ 
Sbjct: 370 FHDTIVLNSMI-------------------------------TVYSNCGQIEEARRIFDM 398

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           +  ++ I+WNSM+    +NG AR+A+ LF E++      L+ D   +A+ + A + + ++
Sbjct: 399 ITGKSVISWNSMVVGLSQNGHARDALGLFCEMHR---LGLRLDKVAIASALSASSSICSI 455

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            +G+QI S   V GL  D V+ SSL++LY K                             
Sbjct: 456 SFGEQIFSLATVLGLQSDHVVASSLIDLYCK----------------------------- 486

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG + +  R+F+       V+WNSM+ G+ SN    EAL L   M+  G+     T  
Sbjct: 487 --CGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFI 544

Query: 309 SVLSACSSLGFLEHG 323
           +VLSAC   G ++ G
Sbjct: 545 AVLSACCHSGLVKEG 559



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 44/235 (18%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 356
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVRNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 417 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 439
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG +    Y L
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVL 233



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 22/211 (10%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L S   +A+ L+ +Y +CG+  +   +F+E+ + +   WN+M+ G    G+  ++L+L  
Sbjct: 470 LQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLE 529

Query: 97  VMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRN 147
           +M  K    ++ ++  ++S    +G +K   T F+ M    +++     +  +    VR 
Sbjct: 530 LMKTKGIKPSERTFIAVLSACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRA 589

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   E+V   + +        + DA    TVIG C         +++   ++       S
Sbjct: 590 GRLEESVEFIENMP------FEADAVSWTTVIGGCKAQGNEAMMRKVAKKLMEMESSHPS 643

Query: 208 V---LGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +   L S L +L    GD+  + ++ +MM E
Sbjct: 644 LYVQLSSGLASL----GDWTKSAEIRSMMYE 670


>gi|242091920|ref|XP_002436450.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
 gi|241914673|gb|EER87817.1| hypothetical protein SORBIDRAFT_10g002910 [Sorghum bicolor]
          Length = 686

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/483 (45%), Positives = 324/483 (67%), Gaps = 13/483 (2%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP---TDALLLFDE 66
           +LL+SC    S   G+QLH   LK G + S+LP  N +L MY+R G+P    DA  LFDE
Sbjct: 12  QLLRSC----SAAAGRQLHQLLLKSGHVPSSLPPTNSVLLMYVR-GSPLYSRDAHRLFDE 66

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           MP +NCFS+N++I    K G    +L++F  MP +N FSWN +I+G A AG+L TAR L 
Sbjct: 67  MPTKNCFSYNSLITALFKSGDHRAALRVFRSMPDRNTFSWNAVITGLAGAGDLDTARDLL 126

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL----NSDLVERLQCDAFILATVIGAC 182
            +MP ++A+A ++++H +VR G   EA  L K +    N D++     D F+L TV+GAC
Sbjct: 127 EEMPVKDAVACHAVLHRFVRCGRVDEAFALLKRIGSHCNPDVIPPWS-DPFVLTTVVGAC 185

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           AD    E G+Q+H+ ++V   + DSVL  +L+++Y KC D +SA  VL+ +K  D+  LS
Sbjct: 186 ADRMKYEIGRQVHARLVVAKTEIDSVLACALIDMYCKCRDLDSARLVLDRLKHVDEISLS 245

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           AL+ GYA+ G+++ A  +FD+  + S  +WNS+ISG +       A +LF +M R+ +L 
Sbjct: 246 ALVYGYASYGQLHKALCLFDKVENPSIALWNSLISGCVPAYHGDSAFVLFVRMLRSDMLP 305

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           ++S  A VL+ C  LG L+ G+Q H  A K G ++D+I ASAL+D YSK  + +DAC+ F
Sbjct: 306 NSSIYAIVLNMCGFLGMLKPGQQTHACALKSGAVNDLIAASALIDFYSKCSLWADACQAF 365

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            EL+ +DTI+LN+MITVYS+CG+I++A+ +F  +P+KS+ISWNSMIVG SQNG  ++A++
Sbjct: 366 GELRHHDTIVLNSMITVYSNCGQIDEARRVFDMIPSKSVISWNSMIVGFSQNGHALDAME 425

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           LFC M+ L L++D  +++SV+SA  +I S+  GEQ+FA    +GL SD I+ +SL+D YC
Sbjct: 426 LFCEMHWLGLQIDNVAVSSVLSASGSICSISFGEQIFALAIALGLQSDHIVVSSLIDLYC 485

Query: 483 KCG 485
           KCG
Sbjct: 486 KCG 488



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 210/457 (45%), Gaps = 70/457 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFL-KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  ++ +C       +G+Q+H   +  K  ++S L  A  L+ MY +C +   A L+ D 
Sbjct: 178 LTTVVGACADRMKYEIGRQVHARLVVAKTEIDSVLACA--LIDMYCKCRDLDSARLVLD- 234

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
                            +L H +             + S + L+ G+A  G+L  A  LF
Sbjct: 235 -----------------RLKHVD-------------EISLSALVYGYASYGQLHKALCLF 264

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADL 185
           + +   +   WNS+I   V       A  LF + L SD++     ++ I A V+  C  L
Sbjct: 265 DKVENPSIALWNSLISGCVPAYHGDSAFVLFVRMLRSDMLP----NSSIYAIVLNMCGFL 320

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             L+ G+Q H+  L +G   D +  S+L++ Y KC  +  A Q    ++  D   L+++I
Sbjct: 321 GMLKPGQQTHACALKSGAVNDLIAASALIDFYSKCSLWADACQAFGELRHHDTIVLNSMI 380

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           + Y+NCG++++ARRVFD     S + WNSMI G+  N    +A+ LF +M   G+  D  
Sbjct: 381 TVYSNCGQIDEARRVFDMIPSKSVISWNSMIVGFSQNGHALDAMELFCEMHWLGLQIDNV 440

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
            ++SVLSA  S+  +  G+Q+   A  +G+  D IV S+L+D Y K G  ++ C++F  +
Sbjct: 441 AVSSVLSASGSICSISFGEQIFALAIALGLQSDHIVVSSLIDLYCKCGNLANGCRIFDGI 500

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
              D +L N                               SM++G + NG  +EAL    
Sbjct: 501 DNPDEVLWN-------------------------------SMLIGYASNGYGLEALKFLD 529

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
            M    L+  + +   V+SAC +   +E G + F R+
Sbjct: 530 LMRSRGLKPSERTFVGVLSACCHSGLVEEGLRWFYRM 566



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 172/415 (41%), Gaps = 101/415 (24%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     +  G+Q H   LK G +N  L  A+ L+  Y +C    DA   F E+ 
Sbjct: 311 AIVLNMCGFLGMLKPGQQTHACALKSGAVND-LIAASALIDFYSKCSLWADACQAFGELR 369

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +    N+MI  +   G  +++ ++F+++P K+  SWN +I GF++             
Sbjct: 370 HHDTIVLNSMITVYSNCGQIDEARRVFDMIPSKSVISWNSMIVGFSQ------------- 416

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
                             NG A +A+ LF E++      LQ D   +++V+ A   + ++
Sbjct: 417 ------------------NGHALDAMELFCEMH---WLGLQIDNVAVSSVLSASGSICSI 455

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            +G+QI +  +  GL  D ++ SSL++LY KCG+  +  ++ + +  PD+          
Sbjct: 456 SFGEQIFALAIALGLQSDHIVVSSLIDLYCKCGNLANGCRIFDGIDNPDE---------- 505

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
                                V+WNSM+ GY SN    EAL     MR  G+     T  
Sbjct: 506 ---------------------VLWNSMLIGYASNGYGLEALKFLDLMRSRGLKPSERTFV 544

Query: 309 SVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            VLSAC   G +E G +  +      GV       S   + Y        AC       V
Sbjct: 545 GVLSACCHSGLVEEGLRWFYRMKEDFGV-------SPSAEHY--------AC-------V 582

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEAL 421
            D ++           GR+++A      MP K+  ISW S+I G    G+  EAL
Sbjct: 583 TDLLV---------RAGRLDEAVEFIENMPFKADAISWTSIIGGCKAQGN--EAL 626



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 16/225 (7%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G+Q+    +  G L S   + + L+ +Y +CGN  +   +FD +   +   WN+M+
Sbjct: 454 SISFGEQIFALAIALG-LQSDHIVVSSLIDLYCKCGNLANGCRIFDGIDNPDEVLWNSML 512

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            G+   G+  ++L+  ++M  +    ++ ++  ++S    +G ++     F  M     +
Sbjct: 513 IGYASNGYGLEALKFLDLMRSRGLKPSERTFVGVLSACCHSGLVEEGLRWFYRMKEDFGV 572

Query: 136 A-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           +     +  +    VR G   EAV   + +        + DA    ++IG C        
Sbjct: 573 SPSAEHYACVTDLLVRAGRLDEAVEFIENMP------FKADAISWTSIIGGCKAQGNEAL 626

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++ + ++  GL   S L   L +     GD++ + ++ +MM +
Sbjct: 627 LHKVANKLMETGLSPHSSLYVQLSSTLAAHGDWDKSAEIRSMMHD 671


>gi|222626171|gb|EEE60303.1| hypothetical protein OsJ_13371 [Oryza sativa Japonica Group]
          Length = 797

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/488 (46%), Positives = 325/488 (66%), Gaps = 23/488 (4%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P +NCFS+N++I   +       +L +F  MP++N FSWN +I+G    G L  AR+L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC----------DAFILAT 177
           +MP ++ +A N+++H YVR G A EA  L + +        QC          D F+LAT
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVG-------QCSGADASSPWNDPFVLAT 180

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           ++GACAD    ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D
Sbjct: 181 IVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVD 240

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
           +F LSALI GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R
Sbjct: 241 EFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMR 300

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           + VL D+ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  D
Sbjct: 301 SDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWED 360

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           AC+ F EL+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG  
Sbjct: 361 ACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHA 420

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            +AL LFC M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL
Sbjct: 421 RDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSL 480

Query: 478 VDFYCKCG 485
           +D YCKCG
Sbjct: 481 IDLYCKCG 488



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 5/326 (1%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           A++  + K G  + +  + N + Q ++FS + LI G+A  G L  A  LF+     +   
Sbjct: 215 ALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAM 274

Query: 137 WNSMIHCYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           WNS+I          +A  LF + + SD++     D+   A+++  C     +  G+QIH
Sbjct: 275 WNSLISGCAFACCGNDAFALFARMMRSDVLP----DSSTYASILNVCGFSVMVNPGQQIH 330

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
              L  G   D ++ S+L++ Y KCG +  A +    ++  D   L+++I+ Y+NCG++ 
Sbjct: 331 GCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRFHDTIVLNSMITVYSNCGQIE 390

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARR+FD  T  S + WNSM+ G   N    +AL LF +M R G+  D   +AS LSA S
Sbjct: 391 EARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLFCEMHRLGLRLDKVAIASALSASS 450

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  +  G+Q+   A  +G+  D +VAS+L+D Y K G  ++ C++F E+   D +L N+
Sbjct: 451 SICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNS 510

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSL 401
           M+  ++S G   +A  +   M  K +
Sbjct: 511 MLIGHASNGYGHEALELLELMKTKGI 536



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 66/315 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     ++ G+Q+H   LK G +N  + +A+ L+  Y +CG   DA   F E+ 
Sbjct: 311 ASILNVCGFSVMVNPGQQIHGCGLKCGAVNDII-VASALIDFYSKCGLWEDACRAFRELR 369

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +    N+MI                               + ++  G+++ AR +F+ 
Sbjct: 370 FHDTIVLNSMI-------------------------------TVYSNCGQIEEARRIFDM 398

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           +  ++ I+WNSM+    +NG AR+A+ LF E++      L+ D   +A+ + A + + ++
Sbjct: 399 ITGKSVISWNSMVVGLSQNGHARDALGLFCEMHR---LGLRLDKVAIASALSASSSICSI 455

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            +G+QI S   V GL  D V+ SSL++LY K                             
Sbjct: 456 SFGEQIFSLATVLGLQSDHVVASSLIDLYCK----------------------------- 486

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG + +  R+F+       V+WNSM+ G+ SN    EAL L   M+  G+     T  
Sbjct: 487 --CGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFI 544

Query: 309 SVLSACSSLGFLEHG 323
           +VLSAC   G ++ G
Sbjct: 545 AVLSACCHSGLVKEG 559



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 44/235 (18%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 356
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVRNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 417 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 439
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG +    Y L
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVL 233



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L S   +A+ L+ +Y +CG+  +   +F+E+ + +   WN+M+ G    G+  ++L+L  
Sbjct: 470 LQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLE 529

Query: 97  VMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRN 147
           +M  K    ++ ++  ++S    +G +K   T F+ M    +++     +  +    VR 
Sbjct: 530 LMKTKGIKPSERTFIAVLSACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRA 589

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           G   E+V   + +        + DA    TVIG C
Sbjct: 590 GRLEESVEFIENMP------FEADAVSWTTVIGGC 618


>gi|218194108|gb|EEC76535.1| hypothetical protein OsI_14327 [Oryza sativa Indica Group]
          Length = 797

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/488 (46%), Positives = 325/488 (66%), Gaps = 23/488 (4%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P +NCFS+N++I   +       +L +F  MP++N FSWN +I+G    G L  AR+L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC----------DAFILAT 177
           +MP ++ +A N+++H YVR G A EA  L + +        QC          D F+LAT
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVG-------QCSGADASSPWNDPFVLAT 180

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           ++GACAD    ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D
Sbjct: 181 IVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVD 240

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
           +F LSALI GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R
Sbjct: 241 EFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMR 300

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           + VL D+ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  D
Sbjct: 301 SDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWED 360

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           AC+ F EL+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG  
Sbjct: 361 ACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHA 420

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            +AL LFC M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL
Sbjct: 421 RDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSL 480

Query: 478 VDFYCKCG 485
           +D YCKCG
Sbjct: 481 IDLYCKCG 488



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 5/326 (1%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           A++  + K G  + +  + N + Q ++FS + LI G+A  G L  A  LF+     +   
Sbjct: 215 ALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAM 274

Query: 137 WNSMIHCYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           WNS+I          +A  LF + + SD++     D+   A+++  C     +  G+QIH
Sbjct: 275 WNSLISGCAFACCGNDAFALFARMMRSDVLP----DSSTYASILNVCGFSVMVNPGQQIH 330

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
              L  G   D ++ S+L++ Y KCG +  A +    ++  D   L+++I+ Y+NCG++ 
Sbjct: 331 GCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRFHDTIVLNSMITVYSNCGQIE 390

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARR+FD  T  S + WNSM+ G   N    +AL LF +M R G+  D   +AS LSA S
Sbjct: 391 EARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLFCEMHRLGLRLDKVAIASALSASS 450

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  +  G+Q+   A  +G+  D +VAS+L+D Y K G  ++ C++F E+   D +L N+
Sbjct: 451 SICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNS 510

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSL 401
           M+  ++S G   +A  +   M  K +
Sbjct: 511 MLIGHASNGYGHEALELLELMKTKGI 536



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 66/315 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     ++ G+Q+H   LK G +N  + +A+ L+  Y +CG   DA   F E+ 
Sbjct: 311 ASILNVCGFSVMVNPGQQIHGCGLKCGAVNDII-VASALIDFYSKCGLWEDACRAFRELR 369

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +    N+MI                               + ++  G+++ AR +F+ 
Sbjct: 370 FHDTIVLNSMI-------------------------------TVYSNCGQIEEARRIFDM 398

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           +  ++ I+WNSM+    +NG AR+A+ LF E++      L+ D   +A+ + A + + ++
Sbjct: 399 ITGKSVISWNSMVVGLSQNGHARDALGLFCEMHR---LGLRLDKVAIASALSASSSICSI 455

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            +G+QI S   V GL  D V+ SSL++LY K                             
Sbjct: 456 SFGEQIFSLATVLGLQSDHVVASSLIDLYCK----------------------------- 486

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG + +  R+F+       V+WNSM+ G+ SN    EAL L   M+  G+     T  
Sbjct: 487 --CGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFI 544

Query: 309 SVLSACSSLGFLEHG 323
           +VLSAC   G ++ G
Sbjct: 545 AVLSACCHSGLVKEG 559



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 44/235 (18%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 356
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVGNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 417 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 439
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG +    Y L
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVL 233



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L S   +A+ L+ +Y +CG+  +   +F+E+ + +   WN+M+ G    G+  ++L+L  
Sbjct: 470 LQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLE 529

Query: 97  VMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRN 147
           +M  K    ++ ++  ++S    +G +K   T F+ M    +++     +  +    VR 
Sbjct: 530 LMKTKGIKPSERTFIAVLSACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRA 589

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           G   E+V   + +        + DA    TVIG C
Sbjct: 590 GRLEESVEFIENMP------FEADAVSWTTVIGGC 618


>gi|115456597|ref|NP_001051899.1| Os03g0849700 [Oryza sativa Japonica Group]
 gi|113550370|dbj|BAF13813.1| Os03g0849700 [Oryza sativa Japonica Group]
          Length = 724

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/488 (46%), Positives = 325/488 (66%), Gaps = 23/488 (4%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFDEM 67
           +LL+SC    S   G+QLH   LK G + S+LP +N LL MY RC   +  DA  LFDEM
Sbjct: 12  QLLRSC----SAVAGQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQHDARRLFDEM 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P +NCFS+N++I   +       +L +F  MP++N FSWN +I+G    G L  AR+L  
Sbjct: 68  PVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLI 127

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC----------DAFILAT 177
           +MP ++ +A N+++H YVR G A EA  L + +        QC          D F+LAT
Sbjct: 128 EMPVKDPVACNAVLHRYVRRGRADEAFALLRTVG-------QCSGADASSPWNDPFVLAT 180

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           ++GACAD    ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + D
Sbjct: 181 IVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQVD 240

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
           +F LSALI GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M R
Sbjct: 241 EFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMMR 300

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           + VL D+ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  D
Sbjct: 301 SDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWED 360

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           AC+ F EL+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG  
Sbjct: 361 ACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHA 420

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            +AL LFC M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++SL
Sbjct: 421 RDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSL 480

Query: 478 VDFYCKCG 485
           +D YCKCG
Sbjct: 481 IDLYCKCG 488



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 5/326 (1%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           A++  + K G  + +  + N + Q ++FS + LI G+A  G L  A  LF+     +   
Sbjct: 215 ALVNMYCKCGDLDSARYVLNGLTQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAM 274

Query: 137 WNSMIHCYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           WNS+I          +A  LF + + SD++     D+   A+++  C     +  G+QIH
Sbjct: 275 WNSLISGCAFACCGNDAFALFARMMRSDVLP----DSSTYASILNVCGFSVMVNPGQQIH 330

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
              L  G   D ++ S+L++ Y KCG +  A +    ++  D   L+++I+ Y+NCG++ 
Sbjct: 331 GCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRFHDTIVLNSMITVYSNCGQIE 390

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARR+FD  T  S + WNSM+ G   N    +AL LF +M R G+  D   +AS LSA S
Sbjct: 391 EARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLFCEMHRLGLRLDKVAIASALSASS 450

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  +  G+Q+   A  +G+  D +VAS+L+D Y K G  ++ C++F E+   D +L N+
Sbjct: 451 SICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNS 510

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSL 401
           M+  ++S G   +A  +   M  K +
Sbjct: 511 MLIGHASNGYGHEALELLELMKTKGI 536



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 66/315 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     ++ G+Q+H   LK G +N  + +A+ L+  Y +CG   DA   F E+ 
Sbjct: 311 ASILNVCGFSVMVNPGQQIHGCGLKCGAVNDII-VASALIDFYSKCGLWEDACRAFRELR 369

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +    N+MI                               + ++  G+++ AR +F+ 
Sbjct: 370 FHDTIVLNSMI-------------------------------TVYSNCGQIEEARRIFDM 398

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           +  ++ I+WNSM+    +NG AR+A+ LF E++      L+ D   +A+ + A + + ++
Sbjct: 399 ITGKSVISWNSMVVGLSQNGHARDALGLFCEMHR---LGLRLDKVAIASALSASSSICSI 455

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            +G+QI S   V GL  D V+ SSL++LY K                             
Sbjct: 456 SFGEQIFSLATVLGLQSDHVVASSLIDLYCK----------------------------- 486

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG + +  R+F+       V+WNSM+ G+ SN    EAL L   M+  G+     T  
Sbjct: 487 --CGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFI 544

Query: 309 SVLSACSSLGFLEHG 323
           +VLSAC   G ++ G
Sbjct: 545 AVLSACCHSGLVKEG 559



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 44/235 (18%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP---S 356
           V+ D      +L +CS++     G+Q+H    K G +   +  S  L     R  P    
Sbjct: 3   VIIDVRNCIQLLRSCSAVA----GQQLHQLLLKSGHVPSSLPPSNSLLLMYARCSPLHQH 58

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DA +LF E+ V +    N++IT + +      A +IFR+MP ++  SWN++I G+   G+
Sbjct: 59  DARRLFDEMPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGN 118

Query: 417 PIEALDLFCNMNKLD-----------------------LRM--------------DKFSL 439
              A  L   M   D                       LR               D F L
Sbjct: 119 LDMARSLLIEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVGQCSGADASSPWNDPFVL 178

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           A+++ ACA+    + G Q  AR+ +  ++ D ++S +LV+ YCKCG +    Y L
Sbjct: 179 ATIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVL 233



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L S   +A+ L+ +Y +CG+  +   +F+E+ + +   WN+M+ G    G+  ++L+L  
Sbjct: 470 LQSDHVVASSLIDLYCKCGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLE 529

Query: 97  VMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRN 147
           +M  K    ++ ++  ++S    +G +K   T F+ M    +++     +  +    VR 
Sbjct: 530 LMKTKGIKPSERTFIAVLSACCHSGLVKEGLTWFHRMQADFSVSPSAEHYACVTDLLVRA 589

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           G   E+V   + +        + DA    TVIG C
Sbjct: 590 GRLEESVEFIENMP------FEADAVSWTTVIGGC 618


>gi|357161281|ref|XP_003579039.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Brachypodium distachyon]
          Length = 698

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/490 (45%), Positives = 324/490 (66%), Gaps = 18/490 (3%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT------DALLL 63
           +LL+SC        G+QLH   LK G + S+L   N LL MY RC + +      DA  L
Sbjct: 13  QLLRSCGPA----AGRQLHSALLKSGHVPSSLAPTNALLLMYARCASSSSPLHRRDAPRL 68

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FDEMP RNCFS+N+++   +       +L LF  MP++N F+WN +I+G A AG+L TAR
Sbjct: 69  FDEMPARNCFSYNSLLTACLNSRDHRAALALFRSMPERNAFTWNTVIAGMASAGDLDTAR 128

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD------LVERLQC-DAFILA 176
            L ++MP ++ +A N+++H YVR G   EA  L + + S             C D F+LA
Sbjct: 129 ALLHEMPVKDPVACNTVLHRYVRCGRVDEAFALVRAIGSGNGSVPAPSSSSPCNDPFVLA 188

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           TV+GACAD    ++G Q H+ ++V   + DSVL  +LV++Y KCGD +SA +  + + + 
Sbjct: 189 TVVGACADRTRYDFGTQAHARMVVAKTELDSVLSCALVDMYCKCGDLDSARRAFDGLAQA 248

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKM 295
           D+F +SAL+ GYA+ G++++A R+  R     +++ WNS++SG        +A +LF +M
Sbjct: 249 DEFSVSALVYGYASRGQLDEALRLLGREEGNLNILLWNSIVSGCAFACLGDDAFVLFARM 308

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            R+ VL D++T ASVL+ C   G L+ G+Q+HG   K G I D+I ASAL+D YSK  + 
Sbjct: 309 MRSDVLPDSATYASVLNVCGFSGMLKPGQQMHGCGLKSGAISDMIAASALIDFYSKCSLW 368

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
            DAC+ FSEL+ +DT++LN+MITVYS+CGRIE+AK +F  + +KS+ISWNSM+VGLSQNG
Sbjct: 369 EDACRAFSELRFHDTVVLNSMITVYSNCGRIEEAKRVFHRITSKSVISWNSMVVGLSQNG 428

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
             I+AL+LFC M+ L +R+DK +LAS +SA +NI S+  GEQ+F+  T++GL SD ++++
Sbjct: 429 HAIDALELFCEMHHLGVRLDKVALASALSASSNICSISFGEQIFSLATVLGLQSDHVVAS 488

Query: 476 SLVDFYCKCG 485
           SL+D YCKCG
Sbjct: 489 SLIDLYCKCG 498



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 185/359 (51%), Gaps = 10/359 (2%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA-RTLFNDMPRRNAI 135
           A+++ + K G  + + + F+ + Q ++FS + L+ G+A  G+L  A R L  +    N +
Sbjct: 224 ALVDMYCKCGDLDSARRAFDGLAQADEFSVSALVYGYASRGQLDEALRLLGREEGNLNIL 283

Query: 136 AWNSMIHCYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
            WNS++          +A  LF + + SD++     D+   A+V+  C     L+ G+Q+
Sbjct: 284 LWNSIVSGCAFACLGDDAFVLFARMMRSDVLP----DSATYASVLNVCGFSGMLKPGQQM 339

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H   L +G   D +  S+L++ Y KC  +  A +  + ++  D   L+++I+ Y+NCG++
Sbjct: 340 HGCGLKSGAISDMIAASALIDFYSKCSLWEDACRAFSELRFHDTVVLNSMITVYSNCGRI 399

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
            +A+RVF R T  S + WNSM+ G   N    +AL LF +M   GV  D   LAS LSA 
Sbjct: 400 EEAKRVFHRITSKSVISWNSMVVGLSQNGHAIDALELFCEMHHLGVRLDKVALASALSAS 459

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           S++  +  G+Q+   A  +G+  D +VAS+L+D Y K G  ++ CK+F  +   D +L N
Sbjct: 460 SNICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKCGNLANGCKIFDGIDKSDEVLWN 519

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL----SQNGSPIEALDLFCNMNK 429
           +M+  Y+S G    A  +   M  + +       VG+      +G   E L  F  M +
Sbjct: 520 SMLIGYASNGHGHKALELLELMRARGIRPTERTFVGVLSACCHSGLVEEGLTWFKQMQE 578



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 19/228 (8%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G+Q+       G L S   +A+ L+ +Y +CGN  +   +FD + + +   WN+M+
Sbjct: 464 SISFGEQIFSLATVLG-LQSDHVVASSLIDLYCKCGNLANGCKIFDGIDKSDEVLWNSML 522

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMP----- 130
            G+   GH  K+L+L  +M  +     + ++  ++S    +G ++   T F  M      
Sbjct: 523 IGYASNGHGHKALELLELMRARGIRPTERTFVGVLSACCHSGLVEEGLTWFKQMQEDFYV 582

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC---ADLAA 187
           + +A  +  +    VR G   EA    + +          D     TV+G C    + A 
Sbjct: 583 KPSAEHYACVTDLLVRAGRLDEAFEFIENMP------FTADTVSWTTVVGGCKAQGNEAL 636

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           ++   +    +  +G    S L   L ++    GD+  + ++   M+E
Sbjct: 637 MQKMAKRLKEMEQSGSSPHSSLYVQLSSVLAAQGDWAKSAEMRGTMRE 684


>gi|28269400|gb|AAO37943.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 731

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/429 (46%), Positives = 290/429 (67%), Gaps = 17/429 (3%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           MP +NCFS+N++I   +       +L +F  MP++N FSWN +I+G    G L  AR+L 
Sbjct: 1   MPVKNCFSYNSVITSHLNSRDHHAALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLL 60

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC----------DAFILA 176
            +MP ++ +A N+++H YVR G A EA  L + +        QC          D F+LA
Sbjct: 61  IEMPVKDPVACNAVLHRYVRRGRADEAFALLRTVG-------QCSGADASSPWNDPFVLA 113

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T++GACAD    ++G+Q H+ ++V+ ++ D VL  +LVN+Y KCGD +SA  VLN + + 
Sbjct: 114 TIVGACADWMKYDFGRQAHARMVVSKIEQDLVLSCALVNMYCKCGDLDSARYVLNGLTQV 173

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D+F LSALI GYA+CG +++A R+FDR  + S  MWNS+ISG        +A  LF +M 
Sbjct: 174 DEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFARMM 233

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           R+ VL D+ST AS+L+ C     +  G+Q+HG   K G ++D+IVASAL+D YSK G+  
Sbjct: 234 RSDVLPDSSTYASILNVCGFSVMVNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWE 293

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DAC+ F EL+ +DTI+LN+MITVYS+CG+IE+A+ IF  +  KS+ISWNSM+VGLSQNG 
Sbjct: 294 DACRAFRELRFHDTIVLNSMITVYSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGH 353

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             +AL LFC M++L LR+DK ++AS +SA ++I S+  GEQ+F+  T++GL SD ++++S
Sbjct: 354 ARDALGLFCEMHRLGLRLDKVAIASALSASSSICSISFGEQIFSLATVLGLQSDHVVASS 413

Query: 477 LVDFYCKCG 485
           L+D YCKCG
Sbjct: 414 LIDLYCKCG 422



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 192/394 (48%), Gaps = 35/394 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C        G+Q H   +   I    L ++  L+ MY +CG+   A  + + +
Sbjct: 112 LATIVGACADWMKYDFGRQAHARMVVSKI-EQDLVLSCALVNMYCKCGDLDSARYVLNGL 170

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            + + FS +A+I G+   GH  ++++LF+   + +   WN LISG A A     A  LF 
Sbjct: 171 TQVDEFSLSALIYGYASCGHLHEAIRLFDRKEEPSIAMWNSLISGCAFACCGNDAFALFA 230

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M R + +                                   D+   A+++  C     
Sbjct: 231 RMMRSDVLP----------------------------------DSSTYASILNVCGFSVM 256

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           +  G+QIH   L  G   D ++ S+L++ Y KCG +  A +    ++  D   L+++I+ 
Sbjct: 257 VNPGQQIHGCGLKCGAVNDIIVASALIDFYSKCGLWEDACRAFRELRFHDTIVLNSMITV 316

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+NCG++ +ARR+FD  T  S + WNSM+ G   N    +AL LF +M R G+  D   +
Sbjct: 317 YSNCGQIEEARRIFDMITGKSVISWNSMVVGLSQNGHARDALGLFCEMHRLGLRLDKVAI 376

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           AS LSA SS+  +  G+Q+   A  +G+  D +VAS+L+D Y K G  ++ C++F E+  
Sbjct: 377 ASALSASSSICSISFGEQIFSLATVLGLQSDHVVASSLIDLYCKCGSLANGCRIFEEIDK 436

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            D +L N+M+  ++S G   +A  +   M  K +
Sbjct: 437 PDEVLWNSMLIGHASNGYGHEALELLELMKTKGI 470



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 66/315 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     ++ G+Q+H   LK G +N  + +A+ L+  Y +CG   DA   F E+ 
Sbjct: 245 ASILNVCGFSVMVNPGQQIHGCGLKCGAVNDII-VASALIDFYSKCGLWEDACRAFRELR 303

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +    N+MI                               + ++  G+++ AR +F+ 
Sbjct: 304 FHDTIVLNSMI-------------------------------TVYSNCGQIEEARRIFDM 332

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           +  ++ I+WNSM+    +NG AR+A+ LF E++      L+ D   +A+ + A + + ++
Sbjct: 333 ITGKSVISWNSMVVGLSQNGHARDALGLFCEMHR---LGLRLDKVAIASALSASSSICSI 389

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            +G+QI S   V GL  D V+ SSL++LY K                             
Sbjct: 390 SFGEQIFSLATVLGLQSDHVVASSLIDLYCK----------------------------- 420

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG + +  R+F+       V+WNSM+ G+ SN    EAL L   M+  G+     T  
Sbjct: 421 --CGSLANGCRIFEEIDKPDEVLWNSMLIGHASNGYGHEALELLELMKTKGIKPSERTFI 478

Query: 309 SVLSACSSLGFLEHG 323
           +VLSAC   G ++ G
Sbjct: 479 AVLSACCHSGLVKEG 493



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%)

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           A  +F  +   +T   NT+IT   S G ++ A+ +   MP K  ++ N+++    + G  
Sbjct: 25  ALNIFRSMPERNTFSWNTIITGIVSTGNLDMARSLLIEMPVKDPVACNAVLHRYVRRGRA 84

Query: 418 IEALDLFCNMNKLD------LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            EA  L   + +           D F LA+++ ACA+    + G Q  AR+ +  ++ D 
Sbjct: 85  DEAFALLRTVGQCSGADASSPWNDPFVLATIVGACADWMKYDFGRQAHARMVVSKIEQDL 144

Query: 472 IISTSLVDFYCKCGFIKMDEYYL 494
           ++S +LV+ YCKCG +    Y L
Sbjct: 145 VLSCALVNMYCKCGDLDSARYVL 167


>gi|413953269|gb|AFW85918.1| hypothetical protein ZEAMMB73_461812, partial [Zea mays]
          Length = 398

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/270 (48%), Positives = 195/270 (72%)

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y KCGD +SA+QVL+ ++  D+  LSAL+ GYA+CG+++ A  +FD+    S  +W S+
Sbjct: 1   MYCKCGDLDSAHQVLDRLEHVDEISLSALVYGYASCGQLHKALCLFDKMESPSIALWTSL 60

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           ISG         A +LF +M R+ +L +++  A VL+ C  LG L+ G+Q    A K G 
Sbjct: 61  ISGCNPAYHGDGAFVLFVRMLRSEMLPNSTIYAIVLNMCGFLGMLKPGQQTQACALKSGA 120

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
           ++D+I ASAL+D YSK G+ +DAC+ FSEL+ +DTI+LN+MITVYS+CG+I++A+ +FR 
Sbjct: 121 VNDLIAASALIDFYSKCGLWADACQAFSELRHHDTIVLNSMITVYSNCGQIDEARRVFRL 180

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           +P+KS+ISWNSMIVG SQNG  ++AL+LFC M++L L++D  +++SV+SA  +I S+  G
Sbjct: 181 IPSKSVISWNSMIVGFSQNGHALDALELFCEMHRLGLQLDNVAISSVLSASGSICSVSSG 240

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           EQ+F     +GL SD I+++SL+D YCKCG
Sbjct: 241 EQIFGLAIALGLQSDHIVASSLIDLYCKCG 270



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 189/382 (49%), Gaps = 36/382 (9%)

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           + K G  + + Q+ + +   ++ S + L+ G+A  G+L  A  LF+ M   +   W S+I
Sbjct: 2   YCKCGDLDSAHQVLDRLEHVDEISLSALVYGYASCGQLHKALCLFDKMESPSIALWTSLI 61

Query: 142 HCYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
                      A  LF + L S+++     ++ I A V+  C  L  L+ G+Q  +  L 
Sbjct: 62  SGCNPAYHGDGAFVLFVRMLRSEMLP----NSTIYAIVLNMCGFLGMLKPGQQTQACALK 117

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G   D +  S+L++ Y KCG +  A Q  + ++  D   L+++I+ Y+NCG++++ARRV
Sbjct: 118 SGAVNDLIAASALIDFYSKCGLWADACQAFSELRHHDTIVLNSMITVYSNCGQIDEARRV 177

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F      S + WNSMI G+  N    +AL LF +M R G+  D   ++SVLSA  S+  +
Sbjct: 178 FRLIPSKSVISWNSMIVGFSQNGHALDALELFCEMHRLGLQLDNVAISSVLSASGSICSV 237

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G+Q+ G A  +G+  D IVAS+L+D Y K G  ++  ++FS +   D +L N+M+  Y
Sbjct: 238 SSGEQIFGLAIALGLQSDHIVASSLIDLYCKCGNLANGRRIFSGIANPDEVLWNSMLIGY 297

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +S                               NG  +EAL L   M    L+  + +  
Sbjct: 298 AS-------------------------------NGYGLEALKLLDLMQSRGLKPSERTFV 326

Query: 441 SVISACANISSLELGEQVFARV 462
            V+SAC +   +E G + F R+
Sbjct: 327 GVLSACCHSGLVEEGLRWFYRM 348



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 66/315 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C     +  G+Q     LK G +N  L  A+ L+  Y +CG   DA   F E+ 
Sbjct: 93  AIVLNMCGFLGMLKPGQQTQACALKSGAVND-LIAASALIDFYSKCGLWADACQAFSELR 151

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +    N+MI  +   G  +++ ++F ++P K+  SWN +I GF++             
Sbjct: 152 HHDTIVLNSMITVYSNCGQIDEARRVFRLIPSKSVISWNSMIVGFSQ------------- 198

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
                             NG A +A+ LF E++      LQ D   +++V+ A   + ++
Sbjct: 199 ------------------NGHALDALELFCEMHR---LGLQLDNVAISSVLSASGSICSV 237

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             G+QI    +  GL  D ++ SSL++LY KCG+  +  ++ + +  PD+   ++++ GY
Sbjct: 238 SSGEQIFGLAIALGLQSDHIVASSLIDLYCKCGNLANGRRIFSGIANPDEVLWNSMLIGY 297

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           A                               SN    EAL L   M+  G+     T  
Sbjct: 298 A-------------------------------SNGYGLEALKLLDLMQSRGLKPSERTFV 326

Query: 309 SVLSACSSLGFLEHG 323
            VLSAC   G +E G
Sbjct: 327 GVLSACCHSGLVEEG 341


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/430 (33%), Positives = 229/430 (53%), Gaps = 39/430 (9%)

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
           L+   +     F +N +I  + KLG+   +  +F+ MPQ N FSWN ++S ++K+G+L T
Sbjct: 30  LIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLST 89

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV---ERLQCDAFILATV 178
            + +F+ MP R+ ++WNS+I  YV  G   EAV+ +  +  D V    R+     +L   
Sbjct: 90  MQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVS 149

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
              C DL     G+QIH  I+  G      +GSSLV++Y K G  + A+QV + ++E + 
Sbjct: 150 SQGCVDL-----GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNV 204

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              + +I+G    G + D++R+F    +  S+ W +MI+G I N  + EA+ LF  MR+ 
Sbjct: 205 VMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQE 264

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G+  D  T  SVL+AC  L  L+ GK++H    + G   +V V SAL+D Y K       
Sbjct: 265 GMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCK------- 317

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                   C  +  A+ +F+ M NK+++SW +M+VG  QNG   
Sbjct: 318 ------------------------CRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSE 353

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           EA+ +FC+M +  +  D F+L SVIS+CAN++SLE G Q   +  + GL S   +S +L+
Sbjct: 354 EAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALI 413

Query: 479 DFYCKCGFIK 488
             Y KCG I+
Sbjct: 414 TLYGKCGSIE 423



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 178/311 (57%), Gaps = 1/311 (0%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C +       K++H  I+ +  + ++ L ++L+N Y K G+   A  V + M +P+ F  
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + ++S Y+  G ++  + +F    +   V WNS+ISGY+      EA+  ++ M ++GVL
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 302 E-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             +  T +++L   SS G ++ G+Q+HG   K G    V V S+L+D Y+K G+ S A +
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F E++  + ++ NTMIT     G ++D+K +F  M  +  ISW +MI GL QNG   EA
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           +DLF +M +  + MD+++  SV++AC  + +L+ G+++   +   G + +  + ++LVD 
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDM 314

Query: 481 YCKCGFIKMDE 491
           YCKC  ++  E
Sbjct: 315 YCKCRSVRYAE 325



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 211/433 (48%), Gaps = 73/433 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  +++++ + K+G    + Q+F+ + ++N   +N +I+G  ++G +K ++ LF+ M  R
Sbjct: 174 FVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKER 233

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++I+W +MI   ++NG   EA+ LF+++     E +  D +   +V+ AC  L AL+ GK
Sbjct: 234 DSISWTTMITGLIQNGLEAEAMDLFRDMRQ---EGMAMDQYTFGSVLTACGGLRALKEGK 290

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           +IH+ I+ +G + +  +GS+LV++Y K                               C 
Sbjct: 291 EIHTLIIRSGYNHNVFVGSALVDMYCK-------------------------------CR 319

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A  VF R  + + V W +M+ GY  N    EA+ +F  M+RNG+  D  TL SV+S
Sbjct: 320 SVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVIS 379

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C++L  LE G Q H  A   G+I  + V++AL+  Y K G   D+ +LF E+   D + 
Sbjct: 380 SCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS 439

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMI-----VGLSQNGS------- 416
              +++ Y+  G+  +   +F  M  + L    +++ +++      GL + G        
Sbjct: 440 WTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESML 499

Query: 417 ------PIE-----ALDLFCN----------MNKLDLRMDKFSLASVISACANISSLELG 455
                 P        +DLF            +NK+    D    A+++S+C    + E+G
Sbjct: 500 KDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIG 559

Query: 456 EQVFARVTIIGLD 468
           +  +A  +++ LD
Sbjct: 560 K--WAAESLLELD 570



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/406 (20%), Positives = 164/406 (40%), Gaps = 95/406 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              +L +C    ++  GK++H   ++ G  N  + + + L+ MY +C +   A  +F  M
Sbjct: 273 FGSVLTACGGLRALKEGKEIHTLIIRSG-YNHNVFVGSALVDMYCKCRSVRYAEAVFKRM 331

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW----------------- 106
             +N  SW AM+ G+ + G  E+++++F  M     + +DF+                  
Sbjct: 332 ANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGA 391

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LI+ + K G ++ +  LF++M  R+ ++W +++  Y + G
Sbjct: 392 QFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFG 451

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
            A E + LF+ +   LV+ L+ DA     V+ AC+    +E G+Q    +L + G+   S
Sbjct: 452 KANETIDLFERM---LVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFS 508

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG------------------- 247
              + +++L+G+ G    A   +N M   PD    + L+S                    
Sbjct: 509 DHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLE 568

Query: 248 ---------------YANCGKMNDARRV--------FDRTTDTSSVMWNSMISGYISNNE 284
                          YA  GK ++  ++          +    S + + S +  + ++++
Sbjct: 569 LDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQ 628

Query: 285 DT--------EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
            +        E   L HKM   G + DAS++   +     +  L H
Sbjct: 629 SSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNH 674


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/487 (32%), Positives = 252/487 (51%), Gaps = 40/487 (8%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR----CGNPTDAL 61
           D+ ARLLQ C T  +   G+ +H   +K G+L S   + N LL  Y       G   DA 
Sbjct: 27  DHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAY-LCNNLLSYYGETAGGAGGLRDAR 85

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            LFDE+P                             + ++N F+WN L+S FAK+G L  
Sbjct: 86  RLFDEIP-----------------------------LARRNVFTWNSLLSMFAKSGRLAD 116

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           AR +F +MP R+A++W  M+    R G   EA++   ++ +D     Q   F L  V+ +
Sbjct: 117 ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ---FTLTNVLSS 173

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA   A   G+++HS ++  GL     + +S++N+YGKCGD  +A  V   M        
Sbjct: 174 CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSW 233

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGV 300
           +A++S   + G+M+ A  +F+   D S V WN+MI+GY  N  D +AL LF +M   + +
Sbjct: 234 NAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 293

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T+ SVLSAC++LG +  GKQVH +  +  +  +  V +AL+ TY+K G   +A +
Sbjct: 294 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 353

Query: 361 LFSELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           +  +    D   I    ++  Y   G +E A+ +F  M N+ +++W +MIVG  QNG   
Sbjct: 354 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 413

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           EA+DLF +M       + ++LA+V+S CA+++ L+ G+Q+  R     L+    +S +++
Sbjct: 414 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAII 473

Query: 479 DFYCKCG 485
             Y + G
Sbjct: 474 TMYARSG 480



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 222/458 (48%), Gaps = 68/458 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  VG+++H   +K G L S +P+AN +L MY +CG+           
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLG-LGSCVPVANSVLNMYGKCGD----------- 214

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                E +  +F  MP ++  SWN ++S     G +  A +LF 
Sbjct: 215 --------------------SETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFE 254

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP R+ ++WN+MI  Y +NG   +A++LF  +  +    +  D F + +V+ ACA+L  
Sbjct: 255 SMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE--SSMAPDEFTITSVLSACANLGN 312

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD--DFCLSALI 245
           +  GKQ+H++IL   + ++S + ++L++ Y K G   +A ++++   E D      +AL+
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G M  AR +F    +   V W +MI GY  N  + EA+ LF  M   G   ++ 
Sbjct: 373 EGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 432

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA+VLS C+SL  L++GKQ+H                               C+    L
Sbjct: 433 TLAAVLSVCASLACLDYGKQIH-------------------------------CRAIRSL 461

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
               + + N +IT+Y+  G    A+ +F +    K  I+W SMIV L+Q+G   EA+ LF
Sbjct: 462 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
             M +  +  D+ +   V+SAC++   +  G++ + ++
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 559



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 170/320 (53%), Gaps = 7/320 (2%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK----CGDFNSANQVLN 231
           A ++  C   A    G+ IH+  +  GL   + L ++L++ YG+     G    A ++ +
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 232 --MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              +   + F  ++L+S +A  G++ DAR VF    +  +V W  M+ G        EA+
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
                M  +G      TL +VLS+C+       G++VH    K+G+   V VA+++L+ Y
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMY 209

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K G    A  +F  + V      N M+++ +  GR++ A+ +F +MP++S++SWN+MI 
Sbjct: 210 GKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIA 269

Query: 410 GLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           G +QNG   +AL LF  M ++  +  D+F++ SV+SACAN+ ++ +G+QV A +    + 
Sbjct: 270 GYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA 329

Query: 469 SDQIISTSLVDFYCKCGFIK 488
            +  ++ +L+  Y K G ++
Sbjct: 330 YNSQVTNALISTYAKSGSVE 349



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 175/393 (44%), Gaps = 82/393 (20%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNML 109
           +R G    A +L  EM   +  + NA+I  + K G  E + ++ +   +   N  S+  L
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           + G+ K G++++AR +F  M  R+ +AW +MI  Y +NG   EA+ LF+ +   +    +
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM---ITCGPE 428

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            +++ LA V+  CA LA L+YGKQIH   + + L+  S + +                  
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSN------------------ 470

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEA 288
                        A+I+ YA  G    ARR+FD+      ++ W SMI     + +  EA
Sbjct: 471 -------------AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 517

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG--------------HACKVG 334
           + LF +M R GV  D  T   VLSACS  GF+  GK+ +               +AC V 
Sbjct: 518 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMV- 576

Query: 335 VIDDVIVASALLDTYSK--RGMPSD-----------ACKL-----FSELKVYDTILLN-- 374
              D++  + L     +  R MP +           AC++      +EL     + ++  
Sbjct: 577 ---DLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPN 633

Query: 375 ------TMITVYSSCGRIEDAKHIFRTMPNKSL 401
                  +  VYS+CGR  DA  I++    K++
Sbjct: 634 NSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 111/243 (45%), Gaps = 28/243 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C +   +  GKQ+H   ++  +L  +  ++N ++ MY R G+   A  +FD++
Sbjct: 434 LAAVLSVCASLACLDYGKQIHCRAIRS-LLEQSSSVSNAIITMYARSGSFPWARRMFDQV 492

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTA 122
             R+   +W +MI    + G  E+++ LF  M     + +  ++  ++S  + AG +   
Sbjct: 493 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 552

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +  ++ +   + IA     +  M+    R G   EA    + +       ++ DA    +
Sbjct: 553 KRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP------VEPDAIAWGS 606

Query: 178 VIGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           ++ AC     A+LA L   K      L++    +S   S++ N+Y  CG ++ A ++   
Sbjct: 607 LLSACRVHKNAELAELAAEK------LLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 660

Query: 233 MKE 235
            KE
Sbjct: 661 RKE 663


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/478 (31%), Positives = 257/478 (53%), Gaps = 4/478 (0%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      I  G  LH H  K GI +S   I+ +LL MY+      +A  +  +    
Sbjct: 27  LLKNLTNQGLIRDGSALHAHLFKTGI-SSEQYISIKLLIMYLNYRKSAEADQISKDFDGF 85

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +    N MI   ++ G+ +++ +LF+ MPQ N+ SW  LISGF K G ++ +   F   P
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNP 145

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +N ++W + I  YV+NGF+ EA++LF +L   L   ++ +     +V+ ACA+L     
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKL---LESEVKPNKVTFTSVVRACANLGDFGL 202

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  +   I+  G + D  + +SL+ L  + G+ + A +V + M+E D    +A++  Y  
Sbjct: 203 GMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVE 262

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
             ++ +ARR+FD     + V W++MI+ Y  +    E+L LF +M + G   + S  +S+
Sbjct: 263 MDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSI 322

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSA +S+  L+ G  +HGH  K+G   DV V+S+L+D Y K G   D   LF  +   + 
Sbjct: 323 LSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNM 382

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +  N M+  YS  G +E+AK++F  MP ++ +SW+++I G        E  ++F  M  L
Sbjct: 383 VSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILL 442

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
               +K + +S++ ACA+ +SL+ G+ +  ++  +G+  D  + T+L D Y K G I+
Sbjct: 443 GEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIE 500



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 215/412 (52%), Gaps = 36/412 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I   +++G    + ++F+ M +K+  SW  ++  + +  EL  AR +F++MP+RN +
Sbjct: 223 NSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEV 282

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W++MI  Y ++G+  E++RLF  +   + E  + +    ++++ A A + AL+ G  IH
Sbjct: 283 SWSAMIARYCQSGYPEESLRLFCRM---IQEGFKPNISCFSSILSALASVEALQAGMNIH 339

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            H+   G + D  + SSL+++Y KCG+      + + + E +    +A++ GY+  G M 
Sbjct: 340 GHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHME 399

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A+ +F+     ++V W+++I+G++   +  E   +F++M   G + + ST +S+L AC+
Sbjct: 400 EAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACA 459

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S   L+ GK +HG   K+G+  D  V +AL D Y+K                        
Sbjct: 460 STASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAK------------------------ 495

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRM 434
                   G IE +K +F  MP K+ +SW +MI GL+++G   E+L LF  M K   +  
Sbjct: 496 -------SGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAP 548

Query: 435 DKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           ++    +V+ AC++   ++ G   F  +  + GL       T +VD   + G
Sbjct: 549 NEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAG 600



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 31/217 (14%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-------------------------- 337
           A T  S+L   ++ G +  G  +H H  K G+                            
Sbjct: 21  AQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISK 80

Query: 338 -----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
                D++V + ++    +RG   +A KLF E+   + I    +I+ +   GR+ ++   
Sbjct: 81  DFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWY 140

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F   P ++++SW + I G  QNG  +EA+ LF  + + +++ +K +  SV+ ACAN+   
Sbjct: 141 FERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF 200

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            LG  V   +   G + D  +S SL+    + G I +
Sbjct: 201 GLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHL 237



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LL +C +  S+  GK LH   +K GI   T  +   L  MY + G+   +  +F+ M
Sbjct: 451 FSSLLCACASTASLDKGKNLHGKIVKLGIQCDTY-VGTALTDMYAKSGDIESSKKVFNRM 509

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           P++N  SW AMI+G  + G  E+SL LF  M + +  + N ++
Sbjct: 510 PKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVM 552


>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 515

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 138/416 (33%), Positives = 222/416 (53%), Gaps = 33/416 (7%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F +N ++  + KLG+   +  LF+ MPQ+N FSWN ++S ++K+G L   + +F+ MP R
Sbjct: 44  FLYNNLMNAYGKLGNIAYARHLFDGMPQRNSFSWNTILSAYSKSGHLPKMKEIFSLMPNR 103

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           + ++WN+++  Y   G   +AV+ +  +  D V  L    F    ++ +  +L  L  G+
Sbjct: 104 DGVSWNTILSGYASYGSVSDAVKAYNSMMRDGVFNLNRITFSTMLILASSRELVDL--GR 161

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH HI+  G      +GS LV++Y K G    A +V + M + +    + +I+G    G
Sbjct: 162 QIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHNTMITGLLKFG 221

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            M D++R+F    +  ++ W +MI+G + N  + EA+  F +MR +G+  D  T  SVL+
Sbjct: 222 MMEDSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYTFGSVLT 281

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC  L  L  GKQVH    +    D+V V SAL+D Y K       CK+           
Sbjct: 282 ACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCK-------CKI----------- 323

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                        +  A+ +F+ M  K+++SW +++VG  QNG   EA+ +FC+M +  +
Sbjct: 324 -------------LRYAEAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQRNGI 370

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             D F+L SVIS+CAN++SLE G Q   R  + GL S   +S +LV  Y KCG I+
Sbjct: 371 EPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISSITVSNALVTLYGKCGSIE 426



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 170/311 (54%), Gaps = 1/311 (0%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C +       K++H HI+    + +  L ++L+N YGK G+   A  + + M + + F  
Sbjct: 18  CCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRNSFSW 77

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + ++S Y+  G +   + +F    +   V WN+++SGY S    ++A+  ++ M R+GV 
Sbjct: 78  NTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSMMRDGVF 137

Query: 302 E-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             +  T +++L   SS   ++ G+Q+HGH  K G    V V S L+D Y+K G+  +A K
Sbjct: 138 NLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKK 197

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F E+   + ++ NTMIT     G +ED+K +F  M  +  ISW +MI GL QNG   EA
Sbjct: 198 VFDEMPDRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNGLEEEA 257

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           +D F  M    + MD+++  SV++AC  +++L  G+QV A +       +  + ++LVD 
Sbjct: 258 IDFFRQMRLDGIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDM 317

Query: 481 YCKCGFIKMDE 491
           YCKC  ++  E
Sbjct: 318 YCKCKILRYAE 328



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 173/376 (46%), Gaps = 66/376 (17%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +G+Q+H H +K G     + + + L+ MY + G   +A  +FDEMP RN    N MI 
Sbjct: 157 VDLGRQIHGHIMKFG-FGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHNTMIT 215

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G +K G  E S +LF+ M ++++ SW  +I+G                            
Sbjct: 216 GLLKFGMMEDSKRLFHGMKERDNISWTTMITGL--------------------------- 248

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
               V+NG   EA+  F+++  D    +  D +   +V+ AC  L AL  GKQ+H+ I+ 
Sbjct: 249 ----VQNGLEEEAIDFFRQMRLD---GIGMDQYTFGSVLTACGGLTALREGKQVHAFIIR 301

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +    +  +GS+LV++Y KC     A  V   MK  +    +A++ GY   G   +A +V
Sbjct: 302 SDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYGQNGFSEEAVKV 361

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F                                 M+RNG+  D  TL SV+S+C++L  L
Sbjct: 362 F-------------------------------CDMQRNGIEPDDFTLGSVISSCANLASL 390

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E G Q H  A   G+I  + V++AL+  Y K G   D+ +LF+E+   D +    +I+ Y
Sbjct: 391 EEGAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALISGY 450

Query: 381 SSCGRIEDAKHIFRTM 396
           +  G+  +   +F  M
Sbjct: 451 AQFGKARETIELFERM 466



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++ S++ ++N L+ +Y +CG+  D+  LF+EM
Sbjct: 377 LGSVISSCANLASLEEGAQFHCRALVSGLI-SSITVSNALVTLYGKCGSIEDSDRLFNEM 435

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             R+  SW A+I G+ + G   ++++LF  M
Sbjct: 436 NFRDEVSWTALISGYAQFGKARETIELFERM 466


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/487 (31%), Positives = 252/487 (51%), Gaps = 40/487 (8%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR----CGNPTDAL 61
           D+ ARLLQ C T  +   G+ +H   +K G+L S   + N LL  Y       G   DA 
Sbjct: 27  DHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAY-LCNNLLSYYGETAGGAGGLRDAR 85

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            LFDE+P                             + ++N F+WN L+S FAK+G L  
Sbjct: 86  RLFDEIP-----------------------------LARRNVFTWNSLLSMFAKSGRLAD 116

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           AR +F +MP R+A++W  M+    R G   EA++   ++ +D     Q   F L  V+ +
Sbjct: 117 ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ---FTLTNVLSS 173

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA   A   G+++HS ++  GL     + +S++N+YGKCGD  +A+ V   M        
Sbjct: 174 CAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSW 233

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGV 300
           +A++S   + G+M+ A  +F+     S V WN+MI+GY  N  D +AL LF +M   + +
Sbjct: 234 NAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSM 293

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T+ SVLSAC++LG +  GKQVH +  +  +  +  V +AL+ TY+K G   +A +
Sbjct: 294 APDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 353

Query: 361 LFSELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           +  +    D   I    ++  Y   G +E A+ +F  M N+ +++W +MIVG  QNG   
Sbjct: 354 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 413

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           EA+DLF +M       + ++LA+V+S CA+++ L+ G+Q+  R     L+    +S +++
Sbjct: 414 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAII 473

Query: 479 DFYCKCG 485
             Y + G
Sbjct: 474 TMYARSG 480



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 222/458 (48%), Gaps = 68/458 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  VG+++H   +K G L S +P+AN +L MY +CG+   A  +F+  
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLG-LGSCVPVANSVLNMYGKCGDAETASTVFER- 224

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                         MP ++  SWN ++S     G +  A +LF 
Sbjct: 225 ------------------------------MPVRSVSSWNAMVSLNTHLGRMDLAESLFE 254

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP R+ ++WN+MI  Y +NG   +A++LF  +  +    +  D F + +V+ ACA+L  
Sbjct: 255 SMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE--SSMAPDEFTITSVLSACANLGN 312

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD--DFCLSALI 245
           +  GKQ+H++IL   + ++S + ++L++ Y K G   +A ++++   E D      +AL+
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G M  AR +F    +   V W +MI GY  N  + EA+ LF  M   G   ++ 
Sbjct: 373 EGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 432

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA+VLS C+SL  L++GKQ+H                               C+    L
Sbjct: 433 TLAAVLSVCASLACLDYGKQIH-------------------------------CRAIRSL 461

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
               + + N +IT+Y+  G    A+ +F +    K  I+W SMIV L+Q+G   EA+ LF
Sbjct: 462 LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 521

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
             M +  +  D+ +   V+SAC++   +  G++ + ++
Sbjct: 522 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 559



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 169/320 (52%), Gaps = 7/320 (2%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK----CGDFNSANQVLN 231
           A ++  C   A    G+ IH+  +  GL   + L ++L++ YG+     G    A ++ +
Sbjct: 30  ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFD 89

Query: 232 --MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              +   + F  ++L+S +A  G++ DAR VF    +  +V W  M+ G        EA+
Sbjct: 90  EIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAI 149

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
                M  +G      TL +VLS+C+       G++VH    K+G+   V VA+++L+ Y
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMY 209

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K G    A  +F  + V      N M+++ +  GR++ A+ +F +MP +S++SWN+MI 
Sbjct: 210 GKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIA 269

Query: 410 GLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           G +QNG   +AL LF  M ++  +  D+F++ SV+SACAN+ ++ +G+QV A +    + 
Sbjct: 270 GYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA 329

Query: 469 SDQIISTSLVDFYCKCGFIK 488
            +  ++ +L+  Y K G ++
Sbjct: 330 YNSQVTNALISTYAKSGSVE 349



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 176/393 (44%), Gaps = 82/393 (20%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNML 109
           +R G    A +L  EM   +  + NA+I  + K G  E + ++ +   +   N  S+  L
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           + G+ K G++++AR +F  M  R+ +AW +MI  Y +NG   EA+ LF+ +   +    +
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM---ITCGPE 428

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            +++ LA V+  CA LA L+YGKQIH   + + L+  S + ++++ +Y + G F  A   
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWA--- 485

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEA 288
                                       RR+FD+      ++ W SMI     + +  EA
Sbjct: 486 ----------------------------RRMFDQVCWRKETITWTSMIVALAQHGQGEEA 517

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG--------------HACKVG 334
           + LF +M R GV  D  T   VLSACS  GF+  GK+ +               +AC V 
Sbjct: 518 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMV- 576

Query: 335 VIDDVIVASALLDTYSK--RGMPSD-----------ACKL-----FSELKVYDTILLN-- 374
              D++  + L     +  R MP +           AC++      +EL     + ++  
Sbjct: 577 ---DLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPN 633

Query: 375 ------TMITVYSSCGRIEDAKHIFRTMPNKSL 401
                  +  VYS+CGR  DA  I++    K++
Sbjct: 634 NSGAYSAIANVYSACGRWSDAARIWKARKEKAV 666



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 111/243 (45%), Gaps = 28/243 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C +   +  GKQ+H   ++  +L  +  ++N ++ MY R G+   A  +FD++
Sbjct: 434 LAAVLSVCASLACLDYGKQIHCRAIRS-LLERSSSVSNAIITMYARSGSFPWARRMFDQV 492

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTA 122
             R+   +W +MI    + G  E+++ LF  M     + +  ++  ++S  + AG +   
Sbjct: 493 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 552

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +  ++ +   + IA     +  M+    R G   EA    + +       ++ DA    +
Sbjct: 553 KRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP------VEPDAIAWGS 606

Query: 178 VIGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           ++ AC     A+LA L   K      L++    +S   S++ N+Y  CG ++ A ++   
Sbjct: 607 LLSACRVHKNAELAELAAEK------LLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 660

Query: 233 MKE 235
            KE
Sbjct: 661 RKE 663


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/482 (30%), Positives = 255/482 (52%), Gaps = 36/482 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++Q+C        GK++H H LK G  +S + + N L+ MY  CGN  DA  LFDE P  
Sbjct: 147 VVQACAVRLLEFGGKEIHDHVLKVG-FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVL 205

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+++ G++K G  E++  +F+ MPQ+N  + N +I    K G++  A  LFN+M 
Sbjct: 206 DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMD 265

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++W+++I  Y +NG   EA+ +F E+N++    ++ D  ++ +V+ ACA L+ ++ 
Sbjct: 266 EKDMVSWSALISGYEQNGMYEEALVMFIEMNAN---GMRLDEVVVVSVLSACAHLSIVKT 322

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH  ++  G++    L ++L+++Y   G+   A ++ N     D    +++ISG   
Sbjct: 323 GKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMK 382

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG +  AR +FD   +   V W+++ISGY  ++  +E L LFH+M+   +  D + L SV
Sbjct: 383 CGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSV 442

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SAC+ L  L+ GK VH +  K G+  +VI+ + LLD Y K                   
Sbjct: 443 ISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMK------------------- 483

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +E+A  +F  M  K + SWN++I+GL+ NG    +LD+F  M   
Sbjct: 484 ------------CGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNN 531

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            +  ++ +   V+ AC ++  ++ G   FA  +   G++ +      +VD   + G +  
Sbjct: 532 GVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNE 591

Query: 490 DE 491
            E
Sbjct: 592 AE 593



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 209/396 (52%), Gaps = 36/396 (9%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ +   N   WN+M+  Y+++  A +A+ L+K +  +    +  D +    V+ ACA 
Sbjct: 97  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKN---NVGPDNYTYPLVVQACA- 152

Query: 185 LAALEYG-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           +  LE+G K+IH H+L  G D D  + ++L+N+Y  CG+   A ++ +     D    ++
Sbjct: 153 VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 212

Query: 244 LISGYANCGKMNDARRVFDRTT-------------------------------DTSSVMW 272
           +++GY   G + +A+ +FD+                                 +   V W
Sbjct: 213 ILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSW 272

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           +++ISGY  N    EAL++F +M  NG+  D   + SVLSAC+ L  ++ GK +HG   +
Sbjct: 273 SALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR 332

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+   V + +AL+  YS  G   DA KLF+     D I  N+MI+    CG +E A+ +
Sbjct: 333 MGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARAL 392

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP K ++SW+++I G +Q+    E L LF  M    +R D+  L SVISAC ++++L
Sbjct: 393 FDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAAL 452

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + G+ V A +   GL  + I+ T+L+D Y KCG ++
Sbjct: 453 DQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVE 488



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    ++  GK +H +  K G L   + +   LL MYM+CG   +AL +F+ M
Sbjct: 439 LVSVISACTHLAALDQGKWVHAYIRKNG-LKVNVILGTTLLDMYMKCGCVENALEVFNGM 497

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             +   SWNA+I G    G  E+SL +F+ M       N+ ++  ++      G +   R
Sbjct: 498 EEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR 557

Query: 124 TLFNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M  ++ I  N      M+    R G   EA +L + +       +  D      +
Sbjct: 558 CHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM------PMAPDVATWGAL 611

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      E G+++   ++    D D      L N++   GD+    +V  MMK+
Sbjct: 612 LGACKKHGDTEMGERVGRKLIELQPDHDG-FHVLLSNIFASKGDWEDVLEVRGMMKQ 667


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/485 (31%), Positives = 237/485 (48%), Gaps = 65/485 (13%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M +  +Y A LL+ C    +    K+LH   LK  I      ++N L+  Y + GN   A
Sbjct: 1   MSSSSNYYASLLKLCCESQNQTQAKKLHCLILKT-IKQPETFLSNNLITAYYKLGNLAYA 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             +FD +P+ N FSWN ++  + KLG   +  Q+FN+MP ++  SWN+ ISG+A  G   
Sbjct: 60  HHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGS-- 117

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
                                          +AVR++K +  D    L  +    +T++ 
Sbjct: 118 -----------------------------CSDAVRVYKLMLKDAAMNL--NRITFSTMLI 146

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            C+    ++ G+QI+  IL  G   D  +GS LV++Y K G    A +  + M E +   
Sbjct: 147 LCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVM 206

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + +I+G   CG + +++R+F    +  S+ W  MI+G + N  + EAL +F +MR  G 
Sbjct: 207 CNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGF 266

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T  SVL+AC SL  L  GKQ+H +  +    D+V V SAL+D YSK         
Sbjct: 267 AMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSK--------- 317

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 C  I+ A+ +F+ MP K++ISW +M+VG  QNG   EA
Sbjct: 318 ----------------------CRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEA 355

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           + +F  M +  +  D F+L SVIS+CAN++SLE G Q   R  + GL S   +S +L+  
Sbjct: 356 VKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITL 415

Query: 481 YCKCG 485
           Y KCG
Sbjct: 416 YGKCG 420



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 218/487 (44%), Gaps = 76/487 (15%)

Query: 47  LLQMYMRCGNPTDA----LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           LL++     N T A     L+   + +   F  N +I  + KLG+   +  +F+ +PQ N
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            FSWN ++S ++K G L   + +FN MP R+ ++WN  I  Y   G   +AVR++K +  
Sbjct: 71  LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           D    L  +    +T++  C+    ++ G+QI+  IL  G   D  +GS LV++Y K G 
Sbjct: 131 DAAMNL--NRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGL 188

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A +  + M E +    + +I+G   CG + +++R+F    +  S+ W  MI+G + N
Sbjct: 189 IYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQN 248

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
             + EAL +F +MR  G   D  T  SVL+AC SL  L  GKQ+H +  +    D+V V 
Sbjct: 249 GLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVG 308

Query: 343 SALLDT-------------------------------YSKRGMPSDACKLFSELK----- 366
           SAL+D                                Y + G   +A K+F E++     
Sbjct: 309 SALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVE 368

Query: 367 ----------------------------------VYDTILLNTMITVYSSCGRIEDAKHI 392
                                             +    + N +IT+Y  CG  E++  +
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRL 428

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  M  +  +SW +++ G +Q G   E + LF  M    L+ D  +   V+SAC+    +
Sbjct: 429 FTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLV 488

Query: 453 ELGEQVF 459
           E G Q F
Sbjct: 489 EKGLQYF 495



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 170/317 (53%), Gaps = 1/317 (0%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A+++  C +       K++H  IL      ++ L ++L+  Y K G+   A+ V + + +
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           P+ F  + ++S Y+  G ++  +++F+       V WN  ISGY +    ++A+ ++  M
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 296 RRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
            ++  +  +  T +++L  CS    ++ G+Q++G   K G   DV V S L+D Y+K G+
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGL 188

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             DA + F E+   + ++ NTMIT    CG IE+++ +F  +  +  ISW  MI GL QN
Sbjct: 189 IYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQN 248

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G   EALD+F  M      MD+F+  SV++AC ++ +L  G+Q+ A V       +  + 
Sbjct: 249 GLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVG 308

Query: 475 TSLVDFYCKCGFIKMDE 491
           ++LVD Y KC  IK  E
Sbjct: 309 SALVDMYSKCRSIKSAE 325



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 194/480 (40%), Gaps = 145/480 (30%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI + + +L  C+    + +G+Q++   LK G   S + + + L+ MY + G   DA   
Sbjct: 138 RITF-STMLILCSKFRCVDLGRQINGQILKFG-FGSDVFVGSPLVDMYTKLGLIYDAKRY 195

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FDE                               MP++N    N +I+G  + G ++ ++
Sbjct: 196 FDE-------------------------------MPERNVVMCNTMITGLMRCGMIEESQ 224

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF  +  R++I+W  MI   ++NG  REA+ +F+E+    +     D F   +V+ AC 
Sbjct: 225 RLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMR---LAGFAMDQFTFGSVLTACG 281

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L AL  GKQIH++++      +  +GS+LV++Y K                        
Sbjct: 282 SLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSK------------------------ 317

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                  C  +  A  VF R    + + W +M+ GY  N    EA+ +F +M+RNGV  D
Sbjct: 318 -------CRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPD 370

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA--------------------- 342
             TL SV+S+C++L  LE G Q H  A   G+I  + V+                     
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFT 430

Query: 343 ----------SALLDTYSKRGMPSDACKLFSELKVY----DTILLNTMITVYSSC----- 383
                     +ALL  Y++ G  ++   LF  +  +    D +   T I V S+C     
Sbjct: 431 EMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGV---TFIGVLSACSRAGL 487

Query: 384 ----------------------------------GRIEDAKHIFRTMP-NKSLISWNSMI 408
                                             GR+E+A++    MP +  ++ W +++
Sbjct: 488 VEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLL 547



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 10/191 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++ S + ++N L+ +Y +CG+  ++  LF EM
Sbjct: 374 LGSVISSCANLASLEEGAQFHCRALVSGLI-SFITVSNALITLYGKCGSTENSHRLFTEM 432

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             R+  SW A++ G+ + G   +++ LF  M     + +  ++  ++S  ++AG ++   
Sbjct: 433 NIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGL 492

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILATVIGA 181
             F  M + + I    + HC         A RL  E   + +  + C  D    AT++ +
Sbjct: 493 QYFESMIKEHGIM-PIVDHCTCIIDLLGRAGRL--EEARNFINNMPCHPDVVGWATLLSS 549

Query: 182 CADLAALEYGK 192
           C     +E GK
Sbjct: 550 CRVHGDMEIGK 560


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/427 (32%), Positives = 222/427 (51%), Gaps = 34/427 (7%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
           +   +P    F  N +I  + KLG    + ++F+ MP  N +SWN ++S ++K G +   
Sbjct: 35  IIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEM 94

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK-ELNSDLVERLQCDAFILATVIGA 181
             LF+ MPRR+ ++WNS+I  Y   G   ++V+ +   L +D       +    +T++  
Sbjct: 95  EYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKND--GSFNLNRITFSTLLIL 152

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
            +    ++ G+QIH H++  G      +GS LV++Y K G  + A +V + + E +    
Sbjct: 153 ASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMY 212

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + LI G   CG++ D++R+F    +  S+ W SMI+G+  N  D +A+ +F +M+   + 
Sbjct: 213 NTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQ 272

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T  SVL+AC  +  L+ GKQVH +  +    D++ VASAL+D Y K          
Sbjct: 273 MDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCK---------- 322

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                                C  I+ A+ +F+ M  K+++SW +M+VG  QNG   EA+
Sbjct: 323 ---------------------CKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAV 361

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             F +M K  +  D F+L SVIS+CAN++SLE G Q  AR    GL S   +S +LV  Y
Sbjct: 362 KTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLY 421

Query: 482 CKCGFIK 488
            KCG I+
Sbjct: 422 GKCGSIE 428



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 174/316 (55%), Gaps = 10/316 (3%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C +       K +HSHI+      ++ L ++L++ Y K G    A +V + M  P+ +  
Sbjct: 19  CCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSW 78

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + ++S Y+  G++++   +FD       V WNS+ISGY       +++  ++ M +N   
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKN--- 135

Query: 302 EDAS------TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            D S      T +++L   S  G ++ G+Q+HGH  K G +  V V S L+D YSK GM 
Sbjct: 136 -DGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           S A K+F EL   + ++ NT+I     CGR+ED+K +F  M  +  ISW SMI G +QNG
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A+D+F  M   +L+MD+++  SV++AC  + +L+ G+QV A +       +  +++
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVAS 314

Query: 476 SLVDFYCKCGFIKMDE 491
           +LVD YCKC  IK  E
Sbjct: 315 ALVDMYCKCKNIKSAE 330



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 215/476 (45%), Gaps = 109/476 (22%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +G+Q+H H +K G ++            Y+  G+P                    +++
Sbjct: 159 VKLGRQIHGHVVKFGFMS------------YVFVGSP--------------------LVD 186

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
            + K+G    + ++F+ +P+KN   +N LI G  + G ++ ++ LF +M  R++I+W SM
Sbjct: 187 MYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSM 246

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  + +NG  R+A+ +F+E+    +E LQ D +   +V+ AC  + AL+ GKQ+H++I+ 
Sbjct: 247 ITGFTQNGLDRDAIDIFREMK---LENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIR 303

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
              D+   +                             F  SAL+  Y  C  +  A  V
Sbjct: 304 T--DYKDNI-----------------------------FVASALVDMYCKCKNIKSAEAV 332

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F + T  + V W +M+ GY  N    EA+  F  M++ G+  D  TL SV+S+C++L  L
Sbjct: 333 FKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASL 392

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN------ 374
           E G Q H  A   G+I  + V++AL+  Y K G   D+ +LF+E+   D +         
Sbjct: 393 EEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGY 452

Query: 375 --------------------------TMITVYSSCGR---IEDAKHIFRTMPNKSLI--- 402
                                     T I V S+C R   +E    IF +M N+  I   
Sbjct: 453 AQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPI 512

Query: 403 --SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
              +  MI   S+ G   EA +    +NK+    D  S A+++S+C    ++++G+
Sbjct: 513 QDHYTCMIDLFSRAGRIEEARNF---INKMPFSPDAISWATLLSSCRFYGNMDIGK 565


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/459 (29%), Positives = 241/459 (52%), Gaps = 61/459 (13%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D    + + L+  C T   + +GK LH HF+K  ++ +T  +ANRL+  Y +C +   A
Sbjct: 10  LDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTF-LANRLIDFYSKCDSIQSA 68

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
                                     HK     +F+V+P KN  SWN++IS ++++G   
Sbjct: 69  --------------------------HK-----VFHVLPVKNTHSWNIIISAYSRSGLFN 97

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            A  L + MP+ N +++NS+I     +GF +E++ +FK +       L  D F L +++G
Sbjct: 98  EAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVL-FDEFTLVSLVG 156

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           +CA L A E  +Q+H   ++ GL+ + ++G++L++ YGKCG+ + +  + + M E D   
Sbjct: 157 SCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVS 216

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +++++ YA   ++ DA  +F +  + ++V W ++I+G+  N    EAL LF +MR  G+
Sbjct: 217 WTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGI 276

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
              A T ASVLSAC+ L  +  GK++HGH          I+ S  +D +         C 
Sbjct: 277 PPSAFTFASVLSACADLALIARGKEIHGH----------IIRSTCIDYF---------CN 317

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F         +LN +I +Y  CG++  A  +F+ M  K ++SWNS+I G +QNG   E+
Sbjct: 318 IF---------ILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEES 368

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           L +F  M + D+R +  +   ++SAC +   +  G ++ 
Sbjct: 369 LAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRIL 407



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 177/318 (55%), Gaps = 5/318 (1%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +++I  C     L+ GK +HSH +   L F + L + L++ Y KC    SA++V +++  
Sbjct: 18  SSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPV 77

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            +    + +IS Y+  G  N+A  + D+    + V +NS+ISG   +    E+L +F  M
Sbjct: 78  KNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTM 137

Query: 296 RR--NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            +  + VL D  TL S++ +C+SLG  E  +QVHG A  +G+  ++I+ +AL+D Y K G
Sbjct: 138 LKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCG 197

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
            P  +  +FS +   D +   +M+  Y+   R+EDA  +F  M  K+ +SW ++I G +Q
Sbjct: 198 EPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQ 257

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA---RVTIIGLDSD 470
           NG   EAL LF  M +  +    F+ ASV+SACA+++ +  G+++     R T I    +
Sbjct: 258 NGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCN 317

Query: 471 QIISTSLVDFYCKCGFIK 488
             I  +L+D YCKCG ++
Sbjct: 318 IFILNALIDMYCKCGQMR 335



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 184/405 (45%), Gaps = 48/405 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+ SC +  +  + +Q+H   +  G LNS + I N L+  Y +CG P  +  +F  M
Sbjct: 151 LVSLVGSCASLGAPELLRQVHGAAIIIG-LNSNIIIGNALIDAYGKCGEPDISFSIFSRM 209

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  SW +M+  + +    E +  LF+ M +KN  SW  LI+GFA+            
Sbjct: 210 PERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQ------------ 257

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                              NG   EA+ LF+++     E +   AF  A+V+ ACADLA 
Sbjct: 258 -------------------NGRGDEALHLFEQMRE---EGIPPSAFTFASVLSACADLAL 295

Query: 188 LEYGKQIHSHILVNG-LDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           +  GK+IH HI+ +  +D+  +  + ++L+++Y KCG   SA  +   M E D    ++L
Sbjct: 296 IARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSL 355

Query: 245 ISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRN-G 299
           I+G+A  G   ++  VF+R  +     + V +  ++S        +E L +   M ++ G
Sbjct: 356 ITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYG 415

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPS 356
           V   +   A ++        LE    +   A K    D V +  ALL      G   +  
Sbjct: 416 VCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGS--DHVGMWGALLGACRIHGNMDLAR 473

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            A ++  +L+  +      +  +Y++  R ++A+ + R M  + L
Sbjct: 474 RAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGL 518


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 148/518 (28%), Positives = 253/518 (48%), Gaps = 70/518 (13%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           F+ K I   T+     LL  Y + G   +A  +F+ M  RN  SWNAMI G+++ G  + 
Sbjct: 228 FVGKNIRTWTI-----LLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKN 282

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           + +LF+ MP+KN  SWN +++G+     +  AR LF+ MP RN+++W  MI  YV     
Sbjct: 283 ARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDY 342

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA  +F ++   +    + D  I   V+ A   L  LE    +    +  G + D V+G
Sbjct: 343 WEAWDVFVKMCRTVA---RPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVG 399

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA------------- 257
           S+++N Y + G  + A      M E +++  + +I+ +A CG+++DA             
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA 459

Query: 258 ------------------RRVFDRTTDTSSVMWNS------------------------- 274
                             R +FD   + + V WN+                         
Sbjct: 460 TKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKN 519

Query: 275 ------MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                 MI+G++ N E  EAL L  ++ R+G +   S+  S LSAC+++G +E G+ +H 
Sbjct: 520 SASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHS 579

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   +  V + L+  Y+K G   D   +F  ++V DT+  N++I+  S    ++D
Sbjct: 580 LAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDD 639

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  MP + ++SW ++I    Q G    ALDLF +M    ++ ++ ++ S++SAC N
Sbjct: 640 ARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGN 699

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           + +++LGEQ  A +  +G D+   +  SL+  Y KCG+
Sbjct: 700 LGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY 737



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 232/471 (49%), Gaps = 47/471 (9%)

Query: 27  LHLHFLKKGILNSTLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           L +HF +      T+P  N      ++  + +CG   DA+ L++ +P +   +  AM+  
Sbjct: 414 LAMHFFE------TMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTA 467

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           + ++G  +K+  +F+ +   N  +WN +I+G+ + G LK A+ LF  MP +N+ +W +MI
Sbjct: 468 YAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMI 527

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             +V+N  +REA+ L  EL+      +  D+    + + ACA++  +E G+ IHS  +  
Sbjct: 528 AGFVQNEESREALELLIELHRS--GSVPSDS-SFTSALSACANIGDVEIGRVIHSLAIKT 584

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G  F+S + + L+++Y KCG+    + V   ++  D    ++LISG +    ++DAR VF
Sbjct: 585 GCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVF 644

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           ++      V W ++IS Y+       AL LF  M   G+  +  T+ S+LSAC +LG ++
Sbjct: 645 EKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIK 704

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G+Q H    K+G    + V ++L+  Y K                              
Sbjct: 705 LGEQFHALIFKLGFDTFLFVGNSLITMYFK------------------------------ 734

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG  ED   +F  MP   LI+WN+++VG +QNG   EA+ +F  M    +  D+ S   
Sbjct: 735 -CG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLG 792

Query: 442 VISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           V+ AC++   ++ G   F  +T   G+       T +VD   + G++   E
Sbjct: 793 VLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAE 843



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 209/458 (45%), Gaps = 85/458 (18%)

Query: 99  PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           PQ + F  N  I    + G ++ AR +FN+M +R+ ++WNSMI+ Y +NG   EA  LF 
Sbjct: 167 PQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF- 225

Query: 159 ELNSDLVERLQCDAFI------LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
                       DAF+         ++   A    +E  +++   +     + + V  ++
Sbjct: 226 ------------DAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMT----ERNVVSWNA 269

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           +++ Y + GD  +A ++ + M E +    +++++GY +C +M++AR +FD+  + +SV W
Sbjct: 270 MISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSW 329

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
             MISGY+  ++  EA  +F KM R     D S    VLSA + L  LE    +   A K
Sbjct: 330 MVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIK 389

Query: 333 VGVIDDVIVASALLDTYSKRG-----------MPS--------------------DACKL 361
            G   DV+V SA+L+ Y++ G           MP                     DA +L
Sbjct: 390 TGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQL 449

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           +  +          M+T Y+  GRI+ A+ IF  + N ++++WN++I G +QNG   EA 
Sbjct: 450 YERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAK 509

Query: 422 DLFCNM----------------------NKLDLRMD---------KFSLASVISACANIS 450
           DLF  M                        L+L ++           S  S +SACANI 
Sbjct: 510 DLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIG 569

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +E+G  + +     G   +  +   L+  Y KCG ++
Sbjct: 570 DVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVE 607



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 170/428 (39%), Gaps = 107/428 (25%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            VG+      +   ILN  +   N ++  Y + G   +A  LF +MP +N  SW AMI G
Sbjct: 470 QVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529

Query: 82  FMKLGHKEKSLQLF------NVMP---------------------------------QKN 102
           F++     ++L+L         +P                                 Q N
Sbjct: 530 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 589

Query: 103 DFSWNMLISGFAKAGE-------------------------------LKTARTLFNDMPR 131
            +  N LIS +AK G                                L  AR +F  MP+
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPK 649

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+ ++W ++I  YV+ G    A+ LF ++   L   ++ +   + +++ AC +L A++ G
Sbjct: 650 RDVVSWTAIISAYVQAGHGEVALDLFLDM---LARGIKPNQLTVTSLLSACGNLGAIKLG 706

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           +Q H+ I   G D    +G+SL+ +Y KCG               D FC           
Sbjct: 707 EQFHALIFKLGFDTFLFVGNSLITMYFKCG-------------YEDGFC----------- 742

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                   VF+   +   + WN+++ G   N    EA+ +F +M   G+L D  +   VL
Sbjct: 743 --------VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVL 794

Query: 312 SACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-D 369
            ACS  G ++ G    +    K G++  V   + ++D   + G  S+A  L   + V  D
Sbjct: 795 CACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPD 854

Query: 370 TILLNTMI 377
           +++   ++
Sbjct: 855 SVIWEALL 862


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  245 bits (625), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 252/477 (52%), Gaps = 4/477 (0%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+  +    I  G  LH H +K G  +S   IA +LL +Y+ C    +   +  E    
Sbjct: 27  LLKKFSNQGLITQGNVLHAHLIKTG-FSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGS 85

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +    N MI  +++ G+  ++  LF+ MP++N+ SW+ LISG  K G ++ +   F   P
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +N ++W + I  +VRNG   EA++LF  L   L   ++ +     +V+ AC +L     
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRL---LESGVRPNDVTFTSVVRACGELGDFGL 202

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  I   ++  G +    + +SL+ L  + G+ + A +V + M++ D    +A++  Y  
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + +ARR+FD   + + + W++MI+ Y  +    EAL LF KM + G   + S  A  
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACT 322

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSA +SL  L  G  +HGH  K+G+  DV + S+L+D Y K G P D   +F  +   + 
Sbjct: 323 LSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +  N+M+  YS  GR+E+ + +F  +P K+ +SW ++I G  +N    + L++F  +   
Sbjct: 383 VCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVS 442

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
               +K + +SV+ ACA+I+SL+ G  V  ++  +G+  D  + T+L D Y KCG I
Sbjct: 443 GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDI 499



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 226/421 (53%), Gaps = 36/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I   +++G  + + ++F+ M +++  SW  ++  + + G+L+ AR +F++MP RN I
Sbjct: 223 NSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI 282

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W++MI  Y ++G+A EA++LF ++   + E  + +    A  + A A L AL  G  IH
Sbjct: 283 SWSAMIARYSQSGYAEEALKLFSKM---VQEGFKPNISCFACTLSALASLRALSAGINIH 339

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            H+   G+D D  +GSSL++LY KCG  +    V +++ E +  C ++++ GY+  G++ 
Sbjct: 340 GHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLE 399

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +   +F+   + + V W ++I+GY+ N +  + L +F+ +  +G   + ST +SVL AC+
Sbjct: 400 ETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACA 459

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  L+ G  VHG   K+G+  D+ V +AL D Y+K                        
Sbjct: 460 SIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAK------------------------ 495

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRM 434
                  CG I  +K +F  MP K+ ISW  MI GL+++G  +E+L LF  M +  ++  
Sbjct: 496 -------CGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAP 548

Query: 435 DKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           ++  L SV+ AC++   ++ G   F  +  + G+       T +VD   + G +   E +
Sbjct: 549 NELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEF 608

Query: 494 L 494
           +
Sbjct: 609 I 609



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 31/217 (14%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGV----------------------ID---- 337
           A T  S+L   S+ G +  G  +H H  K G                       ID    
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 338 -----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
                D++V++ ++  Y + G    A  LF E+   + +  + +I+     GR+E++   
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F   P ++++SW + I G  +NG   EAL LF  + +  +R +  +  SV+ AC  +   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            LG  +   V   G +    +S SL+    + G I +
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDL 237



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+  G  +H   +K GI    + +   L  MY +CG+   +  +F+ M
Sbjct: 451 FSSVLCACASIASLDKGMNVHGKIIKLGI-QYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           P +N  SW  MI+G  + G   +SL LF  M + ++ + N L+
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELM 552



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 89/212 (41%), Gaps = 39/212 (18%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F   A+ + + K G    S Q+F  MP+KN+ SW ++I G A++G    +  LF +M 
Sbjct: 482 DIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEME 541

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R + +A N +                                 +L +V+ AC+    ++ 
Sbjct: 542 RTSEVAPNEL---------------------------------MLLSVLFACSHCGLVDK 568

Query: 191 G-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGY 248
           G    +S   V G+       + +V+L  + G    A + +  +  +P+    +AL+SG 
Sbjct: 569 GLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG- 627

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
             C K  D  ++ +RT      +  +  +GY+
Sbjct: 628 --CKKYKD-EKIAERTAKKLWQLAENNSAGYV 656


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 154/489 (31%), Positives = 256/489 (52%), Gaps = 36/489 (7%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+ ARLLQ   T  +   G+ +H H +K G+L S   + N LL  Y R G          
Sbjct: 26  DHFARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAY-LCNNLLSYYARAGVG-------- 76

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKAGELKTAR 123
               R CF                ++ +LF+ +P  ++N F+WN L+S +AK+G L  AR
Sbjct: 77  ----RGCF---------------HEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADAR 117

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F  MP R+A++W  M+    R G   +AV+ F ++   + E L    F+L  V+ +CA
Sbjct: 118 VVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDM---VGEGLAPSQFMLTNVLSSCA 174

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
              A   G+++HS ++  GL     + +S++ +YGKCGD  +A  V   MK   +   +A
Sbjct: 175 ATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNA 234

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE- 302
           ++S Y + G+M+ A  +F+   + S V WN++I+GY  N  D  AL  F +M     +E 
Sbjct: 235 MVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEP 294

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D  T+ SVLSAC++L  L+ GKQ+H +  + G+     + +AL+ TY+K G    A ++ 
Sbjct: 295 DEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIM 354

Query: 363 SELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
            +  V D   I    ++  Y   G  + A+ +F  M N+ +I+W +MIVG  QNG   EA
Sbjct: 355 DKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEA 414

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           ++LF +M +     +  +LA+V+SACA+++ L  G+Q+  R      +    +S +++  
Sbjct: 415 MELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITV 474

Query: 481 YCKCGFIKM 489
           Y + G + +
Sbjct: 475 YARSGSVPL 483



 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 232/458 (50%), Gaps = 68/458 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  +G+++H   +K G L+S +P+AN +L MY +CG+   A  +F+  
Sbjct: 166 LTNVLSSCAATEARGIGRKVHSFVIKLG-LSSCVPVANSVLYMYGKCGDAETARAVFER- 223

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                         M  +++ SWN ++S +   G +  A ++F 
Sbjct: 224 ------------------------------MKVRSESSWNAMVSLYTHQGRMDLALSMFE 253

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M  R+ ++WN++I  Y +NG    A++ F  + +     ++ D F + +V+ ACA+L  
Sbjct: 254 NMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLT--ASSMEPDEFTVTSVLSACANLRM 311

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALI 245
           L+ GKQ+HS+IL  G+ + S + ++L++ Y K G   +A ++++  ++ + +    +AL+
Sbjct: 312 LKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALL 371

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G    AR VFD   +   + W +MI GY  N ++ EA+ LF  M R+G   ++ 
Sbjct: 372 EGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSH 431

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA+VLSAC+SL +L +GKQ+H                               C+    L
Sbjct: 432 TLAAVLSACASLAYLGYGKQIH-------------------------------CRAIRSL 460

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +     + N +ITVY+  G +  A+ +F  +   K  ++W SMIV L+Q+G   +A+ LF
Sbjct: 461 QEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLF 520

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
             M ++ ++ D+ +   V SAC +   ++ G++ + ++
Sbjct: 521 EEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQM 558



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 185/428 (43%), Gaps = 101/428 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     + +GKQ+H + L+ G+  S+  I N L+  Y + G+   A  + D+    
Sbjct: 302 VLSACANLRMLKMGKQMHSYILRTGMPYSS-QIMNALISTYAKSGSVETARRIMDKA--- 357

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                     V+   N  S+  L+ G+ K G+ K AR +F+ M 
Sbjct: 358 --------------------------VVADLNVISFTALLEGYVKLGDTKQAREVFDVMN 391

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ IAW +MI  Y +NG   EA+ LF+ +   +    + ++  LA V+ ACA LA L Y
Sbjct: 392 NRDVIAWTAMIVGYEQNGQNDEAMELFRSM---IRSGPEPNSHTLAAVLSACASLAYLGY 448

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQIH                                + +  ++E      +A+I+ YA 
Sbjct: 449 GKQIHC-------------------------------RAIRSLQEQSVSVSNAIITVYAR 477

Query: 251 CGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            G +  ARRVFD+      +V W SMI     +    +A++LF +M R GV  D  T   
Sbjct: 478 SGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIG 537

Query: 310 VLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           V SAC+  GF++ GK+ +     + G++ ++   + ++D  ++ G+ ++A +    + V 
Sbjct: 538 VFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVA 597

Query: 369 -DTILLNTMIT----------------------------------VYSSCGRIEDAKHIF 393
            DT++  +++                                   VYS+CGR  DA  I+
Sbjct: 598 PDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIW 657

Query: 394 RTMPNKSL 401
           +   +K++
Sbjct: 658 KLRKDKAV 665



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 108/244 (44%), Gaps = 30/244 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C +   +  GKQ+H   ++  +   ++ ++N ++ +Y R G+   A  +FD++
Sbjct: 433 LAAVLSACASLAYLGYGKQIHCRAIR-SLQEQSVSVSNAIITVYARSGSVPLARRVFDQI 491

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTA 122
             R+   +W +MI    + G  E+++ LF  M     + +  ++  + S    AG +   
Sbjct: 492 CWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKG 551

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +  +  M   + I      +  M+    R G   EA    + +       +  D  +  +
Sbjct: 552 KRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMP------VAPDTVVWGS 605

Query: 178 VIGAC-----ADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLN 231
           ++ AC     ADLA L   K +        +D D S   S+L N+Y  CG +N A ++  
Sbjct: 606 LLAACRVRKNADLAELAAEKLL-------SIDPDNSGAYSALANVYSACGRWNDAARIWK 658

Query: 232 MMKE 235
           + K+
Sbjct: 659 LRKD 662


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 252/477 (52%), Gaps = 4/477 (0%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+  +    I  G  LH H +K G  +S   IA +LL +Y+ C    +   +  E    
Sbjct: 27  LLKKFSNQGLITQGNVLHAHLIKTG-FSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGS 85

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +    N MI  +++ G+  ++  LF+ MP++N+ SW+ LISG  K G ++ +   F   P
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +N ++W + I  +VRNG   EA++LF  L   L   ++ +     +V+ AC +L     
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRL---LESGVRPNDVTFTSVVRACGELGDFGL 202

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  I   ++  G +    + +SL+ L  + G+ + A +V + M++ D    +A++  Y  
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + +ARR+FD   + + + W++MI+ Y  +    EAL LF KM + G   + S  A  
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACT 322

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSA +SL  L  G  +HGH  K+G+  DV + S+L+D Y K G P D   +F  +   + 
Sbjct: 323 LSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +  N+M+  YS  GR+E+ + +F  +P K+ +SW ++I G  +N    + L++F  +   
Sbjct: 383 VCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVS 442

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
               +K + +SV+ ACA+I+SL+ G  V  ++  +G+  D  + T+L D Y KCG I
Sbjct: 443 GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDI 499



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 226/421 (53%), Gaps = 36/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I   +++G  + + ++F+ M +++  SW  ++  + + G+L+ AR +F++MP RN I
Sbjct: 223 NSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI 282

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W++MI  Y ++G+A EA++LF ++   + E  + +    A  + A A L AL  G  IH
Sbjct: 283 SWSAMIARYSQSGYAEEALKLFSKM---VQEGFKPNISCFACTLSALASLRALSAGINIH 339

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            H+   G+D D  +GSSL++LY KCG  +    V +++ E +  C ++++ GY+  G++ 
Sbjct: 340 GHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLE 399

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +   +F+   + + V W ++I+GY+ N +  + L +F+ +  +G   + ST +SVL AC+
Sbjct: 400 ETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACA 459

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  L+ G  VHG   K+G+  D+ V +AL D Y+K                        
Sbjct: 460 SIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAK------------------------ 495

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRM 434
                  CG I  +K +F  MP K+ ISW  MI GL+++G  +E+L LF  M +  ++  
Sbjct: 496 -------CGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAP 548

Query: 435 DKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           ++  L SV+ AC++   ++ G   F  +  + G+       T +VD   + G +   E +
Sbjct: 549 NELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEF 608

Query: 494 L 494
           +
Sbjct: 609 I 609



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 31/217 (14%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGV----------------------ID---- 337
           A T  S+L   S+ G +  G  +H H  K G                       ID    
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 338 -----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
                D++V++ ++  Y + G    A  LF E+   + +  + +I+     GR+E++   
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F   P ++++SW + I G  +NG   EAL LF  + +  +R +  +  SV+ AC  +   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            LG  +   V   G +    +S SL+    + G I +
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDL 237



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+  G  +H   +K GI      +   L  MY +CG+   +  +F+ M
Sbjct: 451 FSSVLCACASIASLDKGMNVHGKIIKLGIQYDIF-VGTALTDMYAKCGDIGSSKQVFERM 509

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           P +N  SW  MI+G  + G   +SL LF  M + ++ + N L+
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELM 552



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 89/212 (41%), Gaps = 39/212 (18%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F   A+ + + K G    S Q+F  MP+KN+ SW ++I G A++G    +  LF +M 
Sbjct: 482 DIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEME 541

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R + +A N +                                 +L +V+ AC+    ++ 
Sbjct: 542 RTSEVAPNEL---------------------------------MLLSVLFACSHCGLVDK 568

Query: 191 G-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGY 248
           G    +S   V G+       + +V+L  + G    A + +  +  +P+    +AL+SG 
Sbjct: 569 GLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG- 627

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
             C K  D  ++ +RT      +  +  +GY+
Sbjct: 628 --CKKYKD-EKIAERTAKKLWQLAENNSAGYV 656


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 160/556 (28%), Positives = 254/556 (45%), Gaps = 114/556 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL--------- 62
           ++ C +  SI + ++LH   +  G L S++ + N LL MY  CG  +DA           
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMG-LKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 69

Query: 63  ----------------------LFDEMPRRNCFSWNAMIEGFM-------------KLGH 87
                                 LF++MP R+  SWN+M+ G+               LG+
Sbjct: 70  VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGY 129

Query: 88  KEKSLQL-----------------------------------FNVMPQKNDFSWNMLISG 112
            + +LQL                                   F   P  + F WN +I G
Sbjct: 130 LKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYG 189

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           ++K G +K A  LF  MP R+ ++WN+MI    ++GF  E +  F E+ +   +  + ++
Sbjct: 190 YSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWN---QGFRPNS 246

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
              A+V+ AC  +  LE+G  +H+ I         V     +++Y  CG           
Sbjct: 247 MTYASVLSACTSIYDLEWGAHLHARI---------VRMEPCLDVYAGCG----------- 286

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                      LI  YA CG++  AR+VFD  T+ ++V W S+I G        EAL+LF
Sbjct: 287 -----------LIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLF 335

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           ++MR   V  D  TLA+VL  C S   +  G+Q+H H    G+   V VA+AL+  Y+K 
Sbjct: 336 NQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKC 395

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G    A   F  + + D I    MIT +S  G +E A+  F  MP +++ISWNSM+    
Sbjct: 396 GDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYM 455

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q G   E L ++  M +  ++ D  + ++ ISACA+++ L LG Q+ A+   +G  S+  
Sbjct: 456 QRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVS 515

Query: 473 ISTSLVDFYCKCGFIK 488
           ++ S+V  Y +CG I+
Sbjct: 516 VANSVVTMYSRCGQIE 531



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 224/484 (46%), Gaps = 78/484 (16%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           N +L   N ++  Y + G+   AL LF +MP R+  SWN MI    + G   ++L  F  
Sbjct: 177 NPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLE 236

Query: 98  MPQKN-------------------DFSWNM--------------------LISGFAKAGE 118
           M  +                    D  W                      LI  +AK G 
Sbjct: 237 MWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR 296

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L++AR +F+ +   NA++W S+I    + GF  EA+ LF ++    V     D F LATV
Sbjct: 297 LESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVAS---DQFTLATV 353

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +G C     +  G+Q+H+H +  GLD    + ++LV +Y KCGD   AN    +M   D 
Sbjct: 354 LGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDI 413

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +A+I+ ++  G +  AR  FD+  + + + WNSM++ Y+      E L ++ +M R 
Sbjct: 414 ISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLRE 473

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           GV  D  T ++ +SAC+ L  L  G Q+   A K+G   +V VA                
Sbjct: 474 GVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVA---------------- 517

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                          N+++T+YS CG+IE+A+ +F ++  K+L+SWN+M+ G +QNG   
Sbjct: 518 ---------------NSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGR 562

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           + +++F  M  +    D+ S  SV+S C++   +  G+  F  +T      D  IS    
Sbjct: 563 KVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMT-----KDHGISPMSE 617

Query: 479 DFYC 482
            F C
Sbjct: 618 HFVC 621



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 214/475 (45%), Gaps = 72/475 (15%)

Query: 27  LHLH-FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           L LH F +K        +   +L MY++CG    A  +F   P  + F WN+MI G+ K 
Sbjct: 134 LQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKY 193

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG----ELKTARTLFNDMPRRNAIA----- 136
           G  +K+L+LF  MP+++  SWN +IS  ++ G     L T   ++N   R N++      
Sbjct: 194 GSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVL 253

Query: 137 ----------WNSMIHC--------------------YVRNGFAREAVRLFKELN----- 161
                     W + +H                     Y + G    A ++F  L      
Sbjct: 254 SACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAV 313

Query: 162 --SDLV-----ERLQCDAFIL----------------ATVIGACADLAALEYGKQIHSHI 198
             + L+        Q +A +L                ATV+G C     +  G+Q+H+H 
Sbjct: 314 SWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHT 373

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
           +  GLD    + ++LV +Y KCGD   AN    +M   D    +A+I+ ++  G +  AR
Sbjct: 374 ITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAR 433

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
             FD+  + + + WNSM++ Y+      E L ++ +M R GV  D  T ++ +SAC+ L 
Sbjct: 434 EYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLA 493

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G Q+   A K+G   +V VA++++  YS+ G   +A K+FS + + + +  N M+ 
Sbjct: 494 VLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMA 553

Query: 379 VYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            Y+  G+      IF  M N       IS+ S++ G S +G   E    F +M K
Sbjct: 554 GYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTK 608



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 66/317 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C +   I +G+QLH H + +G L+S++P+AN L+ MY +CG+   A   F+ M
Sbjct: 350 LATVLGVCLSQKDISIGEQLHAHTITRG-LDSSVPVANALVTMYAKCGDVWKANHAFELM 408

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  SW AMI  F + G  EK+ + F+ MP++N  SW                     
Sbjct: 409 PIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISW--------------------- 447

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     NSM+  Y++ G+  E ++++ ++   L E ++ D    +T I ACADLA 
Sbjct: 448 ----------NSMLATYMQRGYWEEGLKVYIQM---LREGVKTDWITFSTSISACADLAV 494

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QI +     G   +  + +S+V +Y +CG    A ++ + +   +    +A+++G
Sbjct: 495 LILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAG 554

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA  G+    R+V +                            +F KM   G + D  + 
Sbjct: 555 YAQNGQ---GRKVIE----------------------------IFEKMLNIGNVPDQISY 583

Query: 308 ASVLSACSSLGFLEHGK 324
            SVLS CS  GF+  G+
Sbjct: 584 VSVLSGCSHSGFVSEGQ 600


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 251/477 (52%), Gaps = 4/477 (0%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+  +    I  G  LH H +K G  +S   IA +LL +Y+ C    +   +  E    
Sbjct: 27  LLKKFSNQGLITQGNVLHAHLIKTG-FSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGS 85

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +    N MI  +++ G+  ++  LF+ MP++N+ SW+ LISG  K G ++ +   F   P
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +N ++W + I  +VRNG   EA++LF  L   L   ++ +     +V+ AC +L     
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRL---LESGVRPNDVTFTSVVRACGELGDFGL 202

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  I   ++  G +    + +SL+ L  + G+ + A +V + M++ D    +A++  Y  
Sbjct: 203 GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVE 262

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + +ARR+FD   + + + W++MI+ Y  +    EAL LF KM + G   + S  A  
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACT 322

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSA +SL  L  G  +HGH  K+G+  DV + S+L+D Y K G P D   +F  +   + 
Sbjct: 323 LSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +  N+M+  YS  GR+E+ + +F  +P K+  SW ++J G  +N    + L++F  +   
Sbjct: 383 VCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVS 442

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
               +K + +SV+ ACA+I+SL+ G  V  ++  +G+  D  + T+L D Y KCG I
Sbjct: 443 GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDI 499



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 225/421 (53%), Gaps = 36/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I   +++G  + + ++F+ M +++  SW  ++  + + G+L+ AR +F++MP RN I
Sbjct: 223 NSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI 282

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W++MI  Y ++G+A EA++LF ++   + E  + +    A  + A A L AL  G  IH
Sbjct: 283 SWSAMIARYSQSGYAEEALKLFSKM---VQEGFKPNISCFACTLSALASLRALSAGINIH 339

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            H+   G+D D  +GSSL++LY KCG  +    V +++ E +  C ++++ GY+  G++ 
Sbjct: 340 GHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLE 399

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +   +F+   + +   W ++J+GY+ N +  + L +F+ +  +G   + ST +SVL AC+
Sbjct: 400 EXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACA 459

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  L+ G  VHG   K+G+  D+ V +AL D Y+K                        
Sbjct: 460 SIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAK------------------------ 495

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRM 434
                  CG I  +K +F  MP K+ ISW  MI GL+++G  +E+L LF  M +  ++  
Sbjct: 496 -------CGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAP 548

Query: 435 DKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           ++  L SV+ AC++   ++ G   F  +  + G+       T +VD   + G +   E +
Sbjct: 549 NELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEF 608

Query: 494 L 494
           +
Sbjct: 609 I 609



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 31/217 (14%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGV----------------------ID---- 337
           A T  S+L   S+ G +  G  +H H  K G                       ID    
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 338 -----DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
                D++V++ ++  Y + G    A  LF E+   + +  + +I+     GR+E++   
Sbjct: 81  EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F   P ++++SW + I G  +NG   EAL LF  + +  +R +  +  SV+ AC  +   
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            LG  +   V   G +    +S SL+    + G I +
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDL 237



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+  G  +H   +K GI    + +   L  MY +CG+   +  +F+ M
Sbjct: 451 FSSVLCACASIASLDKGMNVHGKIIKLGI-QYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           P +N  SW  MI+G  + G   +SL LF  M + ++ + N L+
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELM 552



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 89/212 (41%), Gaps = 39/212 (18%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F   A+ + + K G    S Q+F  MP+KN+ SW ++I G A++G    +  LF +M 
Sbjct: 482 DIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEME 541

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R + +A N +                                 +L +V+ AC+    ++ 
Sbjct: 542 RTSEVAPNEL---------------------------------MLLSVLFACSHCGLVDK 568

Query: 191 G-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGY 248
           G    +S   V G+       + +V+L  + G    A + +  +  +P+    +AL+SG 
Sbjct: 569 GLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSG- 627

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
             C K  D  ++ +RT      +  +  +GY+
Sbjct: 628 --CKKYKD-EKIAERTAKKLWQLAENNSAGYV 656


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 134/449 (29%), Positives = 246/449 (54%), Gaps = 35/449 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L QSC+   +   GK +  H LK G  +S + I N L+ MY  CGN +DA  +FD     
Sbjct: 132 LFQSCSIRLAEFDGKCIQDHVLKVG-FDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVL 190

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+M+ G++ +G+ E++  +++ MP++N  + N +I  F K G ++ A  LFN+M 
Sbjct: 191 DMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMK 250

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           +++ ++W+++I CY +N    EA+ LFKE+N++    +  D  ++ +V+ AC+ L  +  
Sbjct: 251 QKDLVSWSALISCYEQNEMYEEALILFKEMNAN---GIMVDEVVVLSVLSACSRLLVVIT 307

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK +H  ++  G++    L ++L+++Y  C +  +A ++ +     D    +++ISGY  
Sbjct: 308 GKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVK 367

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG++  AR +FD   D  +V W++MISGY   +  TE L+LF +M+  G   D + L SV
Sbjct: 368 CGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSV 427

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SAC+ L  L+ GK +H +  K G+  ++I+ + L++ Y K G                 
Sbjct: 428 ISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGC---------------- 471

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                          +EDA  +F+ +  K + +WN++I+GL+ NG   ++L  F  M + 
Sbjct: 472 ---------------VEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEH 516

Query: 431 DLRMDKFSLASVISACANISSLELGEQVF 459
            +  ++ +  +V+ AC ++  ++ G + F
Sbjct: 517 GVTPNEITFVAVLGACRHMGLVDEGHRHF 545



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 214/447 (47%), Gaps = 50/447 (11%)

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKAG----------------ELKTARTLFNDMPRR 132
           E  LQ    + Q N     M++SGF K                   +  +  +F+ +   
Sbjct: 30  ETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENP 89

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N    N+M+  Y++     +A+ ++K +   L   +  D +    +  +C+   A   GK
Sbjct: 90  NGFICNTMMKGYMQRNSPCKAIWVYKFM---LESNVAADNYTYPILFQSCSIRLAEFDGK 146

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
            I  H+L  G D D  + ++L+N+Y  CG+ + A +V +     D    +++++GY   G
Sbjct: 147 CIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVG 206

Query: 253 KMNDARRVFDRTTDTSS-------------------------------VMWNSMISGYIS 281
            + +A+ V+DR  + +                                V W+++IS Y  
Sbjct: 207 NVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQ 266

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N    EAL+LF +M  NG++ D   + SVLSACS L  +  GK VHG   KVG+   V +
Sbjct: 267 NEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNL 326

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +AL+  YS       A KLFSE    D I  N+MI+ Y  CG IE A+ +F +MP+K  
Sbjct: 327 QNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDN 386

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           +SW++MI G +Q     E L LF  M     + D+  L SVISAC ++++L+ G+ + A 
Sbjct: 387 VSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAY 446

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +   GL  + I+ T+L++ Y K G ++
Sbjct: 447 IRKNGLKINIILGTTLINMYMKLGCVE 473



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    ++  GK +H +  K G L   + +   L+ MYM+ G   DAL +F  +
Sbjct: 424 LVSVISACTHLAALDQGKWIHAYIRKNG-LKINIILGTTLINMYMKLGCVEDALEVFKGL 482

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             +   +WNA+I G    G  +KSL+ F+ M +     N+ ++  ++      G +    
Sbjct: 483 EEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGH 542

Query: 124 TLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M + + I  N      M+    R G  +EA  L + +       +  D      +
Sbjct: 543 RHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESM------PMAPDVSTWGAL 596

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      E G++I   ++    D D      L N+Y   G++    +V  MM++
Sbjct: 597 LGACKKYGDNETGERIGRKLVELHPDHDG-FNVLLSNIYASKGNWVDVLEVRGMMRQ 652


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/416 (31%), Positives = 214/416 (51%), Gaps = 33/416 (7%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N ++  + K      + ++F+ MPQ+N +SWN L+S ++K   L     +F+ MP R
Sbjct: 45  FLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTR 104

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           + ++WNS+I  Y   GF  ++V+ +  +  +       +   L+T++   +    +  G 
Sbjct: 105 DMVSWNSLISAYAGRGFLLQSVKAYNLMLYN--GPFNLNRIALSTMLILASKQGCVHLGL 162

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H H++  G      +GS LV++Y K G    A Q  + M E +    + LI+G   C 
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCS 222

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           ++ D+R++F    +  S+ W +MI+G+  N  D EA+ LF +MR   +  D  T  SVL+
Sbjct: 223 RIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLT 282

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC  +  L+ GKQVH +  +    D++ V SAL+D Y K                     
Sbjct: 283 ACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCK--------------------- 321

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                     C  I+ A+ +FR M  K+++SW +M+VG  QNG   EA+ +FC+M    +
Sbjct: 322 ----------CKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGI 371

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             D F+L SVIS+CAN++SLE G Q   R  + GL S   +S +LV  Y KCG I+
Sbjct: 372 EPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIE 427



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 219/474 (46%), Gaps = 105/474 (22%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H+G Q+H H +K G             Q Y+  G+P                    +++
Sbjct: 158 VHLGLQVHGHVVKFG------------FQSYVFVGSP--------------------LVD 185

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
            + K G    + Q F+ MP+KN   +N LI+G  +   ++ +R LF DM  +++I+W +M
Sbjct: 186 MYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAM 245

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  + +NG  REA+ LF+E+    +E L+ D +   +V+ AC  + AL+ GKQ+H++I+ 
Sbjct: 246 IAGFTQNGLDREAIDLFREMR---LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIR 302

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
                +  +GS+LV++Y K                               C  +  A  V
Sbjct: 303 TDYQDNIFVGSALVDMYCK-------------------------------CKSIKSAETV 331

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F +    + V W +M+ GY  N    EA+ +F  M+ NG+  D  TL SV+S+C++L  L
Sbjct: 332 FRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASL 391

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E G Q H  A   G+I  + V++AL+  Y K G   D+ +LFSE+   D +    +++ Y
Sbjct: 392 EEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGY 451

Query: 381 SSCGRIEDAKHIFRTM------PNK----SLISWNSMIVGLSQNGS-------------P 417
           +  G+  +   +F +M      P+K     ++S  S   GL Q G+             P
Sbjct: 452 AQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSR-AGLVQKGNQIFESMIKEHRIIP 510

Query: 418 IE-----ALDLFCN----------MNKLDLRMDKFSLASVISACANISSLELGE 456
           IE      +DLF            +NK+    D    AS++S+C    ++E+G+
Sbjct: 511 IEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGK 564



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 158/301 (52%), Gaps = 1/301 (0%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K+IH HI+    + +  L ++LV+ Y K      A +V + M + + +  + L+S Y+  
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASV 310
             + +  RVF        V WNS+IS Y       +++  ++ M  NG    +   L+++
Sbjct: 89  ACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTM 148

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L   S  G +  G QVHGH  K G    V V S L+D YSK G+   A + F E+   + 
Sbjct: 149 LILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNV 208

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           ++ NT+I     C RIED++ +F  M  K  ISW +MI G +QNG   EA+DLF  M   
Sbjct: 209 VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           +L MD+++  SV++AC  + +L+ G+QV A +       +  + ++LVD YCKC  IK  
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSA 328

Query: 491 E 491
           E
Sbjct: 329 E 329



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++ S + ++N L+ +Y +CG+  D+  LF EM
Sbjct: 378 LGSVISSCANLASLEEGAQFHCRALVSGLI-SFITVSNALVTLYGKCGSIEDSHRLFSEM 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKT 121
              +  SW A++ G+ + G   ++L+LF  M      P K  F    ++S  ++AG ++ 
Sbjct: 437 SYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIG--VLSACSRAGLVQK 494

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              +F  M + + I      +  MI  + R G   EA +   ++          DA   A
Sbjct: 495 GNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMP------FSPDAIGWA 548

Query: 177 TVIGACADLAALEYGK 192
           +++ +C     +E GK
Sbjct: 549 SLLSSCRFHRNMEIGK 564



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 5/177 (2%)

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C  L      K++H H  K     ++ + + L+  Y+K    + A ++F ++   +    
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG---SPIEALDLFCNMNKL 430
           NT+++ YS    + + + +F  MP + ++SWNS+I   +  G     ++A +L       
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +L  ++ +L++++   +    + LG QV   V   G  S   + + LVD Y K G +
Sbjct: 139 NL--NRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLV 193


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 250/493 (50%), Gaps = 75/493 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L SC  + ++ +G+++H   +K G L S +P+A  LL MY +CG+P  A ++FD M
Sbjct: 145 VSNVLSSCAANQTLDIGRKIHSFVVKLG-LGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                            KN  +WN LIS + ++G+ + A + F 
Sbjct: 204 T-------------------------------VKNISTWNALISLYMQSGQFELAASQFE 232

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP R+ ++WNSMI  Y + G+  EA+ +F ++ ++    L+ D F LA+++ ACA+L  
Sbjct: 233 KMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE--PSLKPDNFTLASILSACANLEK 290

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL--NMMKEPDDFCLSALI 245
           L  GKQIH++IL    +    +G++L+++Y K G    A  ++  N     +    ++L+
Sbjct: 291 LNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLL 350

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G +  AR +F++  D   V W +MI GY+ N    +AL LF  M   G   ++ 
Sbjct: 351 DGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSY 410

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA++LS  SSL  LEHGKQ+H  A K G                +   PS         
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAG----------------ESSTPS--------- 445

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDL 423
                 + N +I +Y+  G I  AK +F  +PN  K ++SW SMI+ L+Q+G   EA++L
Sbjct: 446 ------VTNALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINL 498

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFY 481
           F  M  + ++ D  +   V+SAC ++  +E G + +  +T +  + +  +S    ++D Y
Sbjct: 499 FERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVH-EIEPTLSHYACMIDLY 557

Query: 482 CKCGFIKMDEYYL 494
            + G ++  E YL
Sbjct: 558 GRAGLLQ--EAYL 568



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/490 (30%), Positives = 245/490 (50%), Gaps = 38/490 (7%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  ++ A +LQ+         G+ +H   +KKG L+  + + N L+  Y + G+   A  
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKG-LHLGVYLMNNLMTFYAKTGSLRFAHH 66

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
           +FDEM                               P K+ FSWN LISG+AK G  + +
Sbjct: 67  VFDEM-------------------------------PLKSTFSWNTLISGYAKQGNFEVS 95

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R L  +MP  + ++W ++I  Y + G    A+ +F ++ S   ER+    F ++ V+ +C
Sbjct: 96  RRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS---ERVPPSQFTVSNVLSSC 152

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A    L+ G++IHS ++  GL     + +SL+N+Y KCGD   A  V + M   +    +
Sbjct: 153 AANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWN 212

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           ALIS Y   G+   A   F++  D   V WNSMISGY     + EAL +F KM     L+
Sbjct: 213 ALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLK 272

Query: 303 -DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  TLAS+LSAC++L  L  GKQ+H +  +        V +AL+  Y+K G    A  +
Sbjct: 273 PDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLI 332

Query: 362 FSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
               +    + I   +++  Y+  G ++ A+ IF  + ++ +++W +MIVG  QNG   +
Sbjct: 333 VEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWND 392

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL+LF  M       + ++LA+++S  ++++ LE G+Q+ A     G  S   ++ +L+ 
Sbjct: 393 ALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIA 452

Query: 480 FYCKCGFIKM 489
            Y K G I +
Sbjct: 453 MYAKTGNINV 462



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 112/244 (45%), Gaps = 30/244 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L   ++   +  GKQ+H   +K G  +ST  + N L+ MY + GN   A  +FD +
Sbjct: 412 LAAMLSVSSSLTILEHGKQIHASAIKAG-ESSTPSVTNALIAMYAKTGNINVAKRVFD-L 469

Query: 68  P--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKT 121
           P  ++   SW +MI    + G  ++++ LF  M     + +  ++  ++S     G ++ 
Sbjct: 470 PNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQ 529

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            R  +N M   + I      +  MI  Y R G  +EA    + +       ++ D     
Sbjct: 530 GRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM------PIEPDNIAWG 583

Query: 177 TVIGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           +++ +C     ADLA +   + +    L++  +  + L  +L N+Y  CG + +A Q   
Sbjct: 584 SLLASCKIHKNADLAKVAAERLL----LIDPGNSGAYL--ALANVYSACGKWENAAQTRK 637

Query: 232 MMKE 235
           +MK+
Sbjct: 638 LMKD 641


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  237 bits (605), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 254/489 (51%), Gaps = 36/489 (7%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+ ARLLQ C T  +   G+ +H H +K G+L ST  + N LL  Y   G          
Sbjct: 210 DHYARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTY-LCNNLLAYYASVGV--------- 259

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKAGELKTAR 123
               R CF                ++  LF+ +P  ++N F+WN L+S +AK+G L  A 
Sbjct: 260 ---SRGCF---------------REARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAH 301

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F +MP R+A++W  MI    R+G   +AV+ F ++ S   E      F L  V+ +CA
Sbjct: 302 VVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVS---EGFAPSQFTLTNVLSSCA 358

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            + A   G+++H  ++  GL     + +S++ +YGKCGD  +A  V   M+       + 
Sbjct: 359 AMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNV 418

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE- 302
           ++S Y + G+M  A  +F+   + S V WN++I+GY  N  D  AL  F +M     +E 
Sbjct: 419 MVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEP 478

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           DA T+ SVLSAC++L  L+ GKQ+H +  + G+     + +AL+ TY+K G    A ++ 
Sbjct: 479 DAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIM 538

Query: 363 SELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
            +  V D   I    ++  Y   G  + A+ IF  M N+ +I+W +MIVG  QNG   EA
Sbjct: 539 DQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEA 598

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           ++LF +M  +    +  +LA+V+SACA+++ L+ G+Q+  +      +    +S +++  
Sbjct: 599 MELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITV 658

Query: 481 YCKCGFIKM 489
           Y + G + +
Sbjct: 659 YARSGSVPL 667



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 245/493 (49%), Gaps = 69/493 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  VG+++H   +K G L+S +P+AN +L MY +CG+   A  +F+ M
Sbjct: 350 LTNVLSSCAAMEACGVGRKVHPFVVKLG-LSSCVPVANSVLYMYGKCGDAETARAVFERM 408

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+                                 SWN+++S +   G ++ A ++F 
Sbjct: 409 QVRSVS-------------------------------SWNVMVSLYTHQGRMELAVSMFE 437

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M  R+ ++WN++I  Y +NG    A++ F  + S     ++ DAF + +V+ ACA+L  
Sbjct: 438 NMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLS--ASSMEPDAFTVTSVLSACANLRM 495

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALI 245
           L+ GKQ+HS+IL  G+   S + ++L++ Y K G   +A ++++  ++ + +    +AL+
Sbjct: 496 LKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALL 555

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G    AR +FD   +   + W +MI GY  N ++ EA+ LF  M   G   ++ 
Sbjct: 556 EGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSH 615

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA+VLSAC+SL +L++GKQ+H                               CK    L
Sbjct: 616 TLAAVLSACASLAYLDYGKQIH-------------------------------CKAIRSL 644

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +     + N +ITVY+  G +  A+ +F  +   K  I+W SMIV ++Q+G   +A+ LF
Sbjct: 645 QEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLF 704

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCK 483
             M ++ ++ D  +   V+SACA+   ++ G++ + ++    G+         +VD + +
Sbjct: 705 EEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHAR 764

Query: 484 CGFIKMDEYYLMQ 496
            G +     ++ +
Sbjct: 765 AGLLTEAHEFIQR 777



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 187/428 (43%), Gaps = 101/428 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     + +GKQ+H + L+ G+  S+  I N L+  Y + G+   A  + D+    
Sbjct: 486 VLSACANLRMLKMGKQMHSYILRTGMPCSS-QIMNALISTYAKSGSVETARRIMDQA--- 541

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                     V+   N  S+  L+ G+ K G+ K AR +F+ M 
Sbjct: 542 --------------------------VVADLNVISFTALLEGYVKLGDTKQAREIFDIMN 575

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ IAW +MI  Y +NG   EA+ LF+ +   ++   + ++  LA V+ ACA LA L+Y
Sbjct: 576 NRDVIAWTAMIVGYHQNGQNDEAMELFRSM---ILIGPEPNSHTLAAVLSACASLAYLDY 632

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQIH                                + +  ++E      +A+I+ YA 
Sbjct: 633 GKQIHC-------------------------------KAIRSLQEQSVSVSNAIITVYAR 661

Query: 251 CGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            G +  ARRVFD+      ++ W SMI     +    +A++LF +M R GV  D  T   
Sbjct: 662 SGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVG 721

Query: 310 VLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           VLSAC+  GF++ GK+ +     + G++  +   + ++D +++ G+ ++A +    + V 
Sbjct: 722 VLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVA 781

Query: 369 -DTILLNTMIT----------------------------------VYSSCGRIEDAKHIF 393
            DT++  +++                                   VYS+CGR  DA  I+
Sbjct: 782 PDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIW 841

Query: 394 RTMPNKSL 401
           +   +K +
Sbjct: 842 KLRKDKGV 849



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 28/243 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C +   +  GKQ+H   ++  +   ++ ++N ++ +Y R G+   A  +FD++
Sbjct: 617 LAAVLSACASLAYLDYGKQIHCKAIRS-LQEQSVSVSNAIITVYARSGSVPLARRVFDQI 675

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTA 122
             R+   +W +MI    + G  E+++ LF  M     + +  ++  ++S  A AG +   
Sbjct: 676 CWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKG 735

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +  +  M   + I      +  M+  + R G   EA    + +       +  D  +  +
Sbjct: 736 KRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMP------VAPDTVVWGS 789

Query: 178 VIGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           ++ AC     ADLA L  GK      L++    +S   S+L N+Y  CG +N A ++  +
Sbjct: 790 LLAACRVRKNADLAELAAGK------LLSIDPHNSGAYSALANVYSACGRWNDAARIWKL 843

Query: 233 MKE 235
            K+
Sbjct: 844 RKD 846


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 250/493 (50%), Gaps = 75/493 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L SC  + ++ +G+++H   +K G L S +P+A  LL MY +CG+P  A ++FD M
Sbjct: 145 VSNVLSSCAANQTLDIGRKIHSFVVKLG-LGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                            KN  +WN LIS + ++G+ + A + F 
Sbjct: 204 T-------------------------------VKNISTWNALISLYMQSGQFELAASQFE 232

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP R+ ++WNSMI  Y + G+  EA+ +F ++ ++    L+ D F LA+++ ACA+L  
Sbjct: 233 KMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE--PSLKPDNFTLASILSACANLEK 290

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL--NMMKEPDDFCLSALI 245
           L  GKQIH++IL    +    +G++L+++Y K G    A  ++  N     +    ++L+
Sbjct: 291 LNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLL 350

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G +  AR +F++  D   V W +MI GY+ N    +AL LF  M   G   ++ 
Sbjct: 351 DGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSY 410

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA++LS  SSL  LEHGKQ+H  A K G                +   PS         
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAG----------------ESSTPS--------- 445

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDL 423
                 + N +I +Y+  G I  AK +F  +PN  K ++SW SMI+ L+Q+G   EA++L
Sbjct: 446 ------VTNALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINL 498

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFY 481
           F  M  + ++ D  +   V+SAC ++  +E G + +  +T +  + +  +S    ++D Y
Sbjct: 499 FERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVH-EIEPTLSHYACMIDLY 557

Query: 482 CKCGFIKMDEYYL 494
            + G ++  E YL
Sbjct: 558 GRAGLLQ--EAYL 568



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/490 (30%), Positives = 246/490 (50%), Gaps = 38/490 (7%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  ++ A +LQ+         G+ +H   +KKG L+  + + N L+  Y + G+   A  
Sbjct: 8   TSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKG-LHLGVYLMNNLMTFYAKTGSLRFAHH 66

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
           +FDEM                               P K+ FSWN LISG+AK G  + +
Sbjct: 67  VFDEM-------------------------------PLKSTFSWNTLISGYAKQGNFEVS 95

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R L  +MP  + ++W ++I  Y + G    A+ +F ++ S   ER+    F ++ V+ +C
Sbjct: 96  RRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS---ERVPPSQFTVSNVLSSC 152

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A    L+ G++IHS ++  GL     + +SL+N+Y KCGD   A  V + M   +    +
Sbjct: 153 AANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWN 212

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           ALIS Y   G+   A   F++  D   V WNSMISGY     + EAL++F KM     L+
Sbjct: 213 ALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLK 272

Query: 303 -DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  TLAS+LSAC++L  L  GKQ+H +  +        V +AL+  Y+K G    A  +
Sbjct: 273 PDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLI 332

Query: 362 FSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
               +    + I   +++  Y+  G ++ A+ IF  + ++ +++W +MIVG  QNG   +
Sbjct: 333 VEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWND 392

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL+LF  M       + ++LA+++S  ++++ LE G+Q+ A     G  S   ++ +L+ 
Sbjct: 393 ALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIA 452

Query: 480 FYCKCGFIKM 489
            Y K G I +
Sbjct: 453 MYAKTGNINV 462



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 112/244 (45%), Gaps = 30/244 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L   ++   +  GKQ+H   +K G  +ST  + N L+ MY + GN   A  +FD +
Sbjct: 412 LAAMLSVSSSLTILEHGKQIHASAIKAG-ESSTPSVTNALIAMYAKTGNINVAKRVFD-L 469

Query: 68  P--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKT 121
           P  ++   SW +MI    + G  ++++ LF  M     + +  ++  ++S     G ++ 
Sbjct: 470 PNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQ 529

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            R  +N M   + I      +  MI  Y R G  +EA    + +       ++ D     
Sbjct: 530 GRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM------PIEPDNIAWG 583

Query: 177 TVIGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           +++ +C     ADLA +   + +    L++  +  + L  +L N+Y  CG + +A Q   
Sbjct: 584 SLLASCKIHKNADLAKVAAERLL----LIDPGNSGAYL--ALANVYSACGKWENAAQTRK 637

Query: 232 MMKE 235
           +MK+
Sbjct: 638 LMKD 641


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/491 (30%), Positives = 242/491 (49%), Gaps = 80/491 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   S+  G+++H      G L+S   +AN L+ MY R G+  DA  +F  +  R
Sbjct: 116 VLGACS---SLAQGREIHNRVFYSG-LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFA------------- 114
           +  SWNA+I    + G    +L++F  M    + N  ++  +ISGF+             
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 115 ----------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                                 K G    AR +F+ M +R+ ++WN MI CYV+NG   E
Sbjct: 232 EIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHE 291

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ L+++L+ +  +R +       +++GAC+ + AL  G+ +HSHIL  GLD +  + ++
Sbjct: 292 ALELYQKLDMEGFKRTKA---TFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR---VFDRTTDTSS 269
           LVN+Y KCG    A +V N MK  D    S LI  YA+ G   DAR+   VFDR     +
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           + WN+MI+ Y+ N     A+ +F +M    G+  DA T  +VL AC+SLG L   K +H 
Sbjct: 409 ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              +                              SEL+  + ++ NT+I +Y+ CG +E+
Sbjct: 469 QISE------------------------------SELES-NVVVTNTLINMYARCGSLEE 497

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F     K+++SW +M+   SQ G   EALDLF  M+   ++ D  +  S++  C +
Sbjct: 498 AERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTH 557

Query: 449 ISSLELGEQVF 459
             SLE G + F
Sbjct: 558 GGSLEQGWRYF 568



 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/535 (27%), Positives = 259/535 (48%), Gaps = 80/535 (14%)

Query: 1   MDTRIDYLARL--LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           MD + D +  L  L SC++   +  G+ LH           T+ + N L+ MY +C +  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTM-VGNALISMYGKCDSLV 59

Query: 59  DALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLF--------------------- 95
           DA  +F+ M   +RN  SWNAMI  + + GH  ++L L+                     
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 96  -NVMPQKNDFS--------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
            + + Q  +                 N L++ +A+ G +  A+ +F  +  R+  +WN++
Sbjct: 120 CSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  + ++G    A+R+FKE+  D+    + ++     VI   +    L  G++IH+ I+ 
Sbjct: 180 ILAHSQSGDWSGALRIFKEMKCDM----KPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           NG D D V+ ++L+N+YGK                               CG  ++AR V
Sbjct: 236 NGFDSDLVVATALINMYGK-------------------------------CGSSHEAREV 264

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD+      V WN MI  Y+ N +  EAL L+ K+   G     +T  S+L ACSS+  L
Sbjct: 265 FDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G+ VH H  + G+  +V VA+AL++ Y+K G   +A K+F+ +K  D +  +T+I  Y
Sbjct: 325 AQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAY 384

Query: 381 SSCGRIED---AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDK 436
           +S G  +D   A+ +F  + ++  I WN+MI    QNG  + A+ +F  M     L+ D 
Sbjct: 385 ASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDA 444

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            +  +V+ ACA++  L   + + A+++   L+S+ +++ +L++ Y +CG ++  E
Sbjct: 445 VTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAE 499


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 213/385 (55%), Gaps = 5/385 (1%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+  ++K G+LK    LF  M  R+ I+WN+MI CYV  G  REA+ LF E+   LV 
Sbjct: 172 NNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM---LVS 228

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +  D   + +++  CA L  LE GK++H +I+ N L     L + LV++Y KCG  + A
Sbjct: 229 GVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEA 288

Query: 227 NQVLNMMKEP--DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
           + +L+   E   D    + L+SGY    K++ AR++FD+  + S V W +M+SGY+    
Sbjct: 289 HGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGY 348

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             E+L LF +MR   V+ D   L +VLSAC  L   + G+ VH      G++ D  + +A
Sbjct: 349 YCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNA 408

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           LLD Y+K G   +A + F +L        N+M+  +   G ++ A+  F  +P K ++SW
Sbjct: 409 LLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSW 468

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N+M+    ++    E+ ++FC M   +++ DK +L S++S+CA + +L  G  V   +  
Sbjct: 469 NTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEK 528

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKM 489
             +  D ++ T+L+D Y KCG ++M
Sbjct: 529 NEIGIDAMLGTALIDMYGKCGCVEM 553



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 219/457 (47%), Gaps = 68/457 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFL--KKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           +  L+ +C     + +GK+LHL+ +  K  I  S L   N L+ MY +CG   +A  L  
Sbjct: 237 MVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLL---NCLVDMYSKCGKMDEAHGLLS 293

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                             +    E  + L           W  L+SG+ K+ ++  AR L
Sbjct: 294 ------------------RCDESEVDVVL-----------WTTLVSGYVKSNKIDKARQL 324

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+ M  R+ ++W +M+  YV+ G+  E++ LF+++     E +  D   L TV+ AC  L
Sbjct: 325 FDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR---FENVIPDEVALVTVLSACVHL 381

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
              + G+ +H+ I+  G+  D  LG++L++LY KCG  + A +    +        ++++
Sbjct: 382 EDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSML 441

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            G+   G ++ AR  F++  +   V WN+M++ Y+ ++   E+  +F KM+ + V  D +
Sbjct: 442 DGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKT 501

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TL S+LS+C+ +G L HG  V+ +  K  +  D ++ +AL+D Y K              
Sbjct: 502 TLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGK-------------- 547

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                            CG +E A  IF  +  K++  W +M+   +  G  +EA+DL+ 
Sbjct: 548 -----------------CGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYL 590

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
            M +  ++ D  +  ++++AC++   ++ G + F ++
Sbjct: 591 EMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKL 627



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 182/376 (48%), Gaps = 40/376 (10%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A  + +      +I WN+++   ++ G  +E +  +  +   + + +  D      +
Sbjct: 83  LDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHM---VTQGVLLDISTFHFL 139

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           I AC     ++ G ++H  IL  G   +  L ++L+ LY KCG                 
Sbjct: 140 IHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCG----------------- 182

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                         K+ +  ++F++ T    + WN+MIS Y+      EAL LF +M  +
Sbjct: 183 --------------KLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVS 228

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           GVL D  T+ S++S C+ L  LE GK++H +     +     + + L+D YSK G   +A
Sbjct: 229 GVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEA 288

Query: 359 CKLFS---ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
             L S   E +V D +L  T+++ Y    +I+ A+ +F  M  +SL+SW +M+ G  Q G
Sbjct: 289 HGLLSRCDESEV-DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGG 347

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              E+L+LF  M   ++  D+ +L +V+SAC ++   +LG  V A +   G+  D  +  
Sbjct: 348 YYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGN 407

Query: 476 SLVDFYCKCGFIKMDE 491
           +L+D Y KCG  K+DE
Sbjct: 408 ALLDLYAKCG--KLDE 421



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 64/298 (21%)

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           IH+H++   L  D  + S ++       + + A+Q+L+   EP+                
Sbjct: 54  IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPE---------------- 97

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                          S++WN+++   +      E L  ++ M   GVL D ST   ++ A
Sbjct: 98  ---------------SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHA 142

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C     ++ G +VHG   K G                           F   K     L 
Sbjct: 143 CCKNFDVKLGSEVHGRILKCG---------------------------FGRNKS----LN 171

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N ++ +YS CG++++   +F  M ++ +ISWN+MI      G   EALDLF  M    + 
Sbjct: 172 NNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVL 231

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            D+ ++ S++S CA +  LE+G+++   +    L     +   LVD Y KCG  KMDE
Sbjct: 232 PDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCG--KMDE 287


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 238/449 (53%), Gaps = 35/449 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q+C+   S    KQ+H H LK G  +S + + N L+  +  C N TDA  +F+E    
Sbjct: 84  LIQACSIRRSEWEAKQVHNHVLKLG-FDSDVYVRNTLINCFSVCSNMTDACRVFNESSVL 142

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+++ G++++G+ E++  +++ MP+++  + N +I  F   G +  A  LF++M 
Sbjct: 143 DSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML 202

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ + W+++I C+ +N    EA+R F  ++   V     D  +  + + ACA+L  +  
Sbjct: 203 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV---MVDEVVAVSALSACANLLVVNM 259

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IHS  L  G +    L ++L+ +Y KCGD   A ++ +     D    +++ISGY  
Sbjct: 260 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 319

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           C  +++A+ +FD   +   V W+SMISGY  N+   E L LF +M+ +G   D +TL SV
Sbjct: 320 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 379

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SAC+ L  LE GK VH +  + G+  +VI+ + L+D Y K                   
Sbjct: 380 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMK------------------- 420

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +E A  +F  M  K + +WN++I+GL+ NG    +LD+F NM K 
Sbjct: 421 ------------CGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKC 468

Query: 431 DLRMDKFSLASVISACANISSLELGEQVF 459
            +  ++ +   V+ AC ++  ++ G+  F
Sbjct: 469 HVTPNEITFMGVLGACRHMGLVDEGQHHF 497



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 198/398 (49%), Gaps = 34/398 (8%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
            R +FN +   N   WN MI  Y++      A  L+K + S+    L  D +    +I A
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNY---LGADNYTYPLLIQA 87

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C+   +    KQ+H+H+L  G D D  + ++L+N +  C +   A +V N     D    
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 242 SALISGYANCGKMNDAR-------------------------------RVFDRTTDTSSV 270
           +++++GY   G + +A+                               ++FD   +   V
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 207

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+++I+ +  N    EA+  F  M + GV+ D     S LSAC++L  +  GK +H  +
Sbjct: 208 TWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLS 267

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G    + + +AL+  YSK G    A KLF E  + D I  N+MI+ Y  C  +++AK
Sbjct: 268 LKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAK 327

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF +MP K ++SW+SMI G +QN    E L LF  M     + D+ +L SVISACA ++
Sbjct: 328 AIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLA 387

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +LE G+ V A +   GL  + I+ T+L+D Y KCG ++
Sbjct: 388 ALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 425


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/488 (30%), Positives = 249/488 (51%), Gaps = 41/488 (8%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT-----DA 60
           D+ ARLLQ C T  +   G+ +H   +K G+L S   + N LL  Y            +A
Sbjct: 24  DHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAY-LCNNLLSYYAGPAAGGGGGFREA 82

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             LFDE+P                               Q+N F+WN L+S +AK+G L 
Sbjct: 83  RRLFDEIP-----------------------------AAQRNVFTWNSLLSLYAKSGRLA 113

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            AR +F +MP R+ ++W  M+    R G   EA+++F ++ +D +   Q   F L  V+ 
Sbjct: 114 DARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQ---FTLTNVLS 170

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           +CA   A   G+++HS ++  GL     + +S++N+YGKCGD  +A  V   M E     
Sbjct: 171 SCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSS 230

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +A++S  A+ G+M+ A  +F+   D + V WN++I+GY  N  + +AL  F +M     
Sbjct: 231 WNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYST 290

Query: 301 L-EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D  T+ SVLSAC++LG +  GKQVH +  +  +     V +AL+  Y+K G   +A 
Sbjct: 291 MAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENAR 350

Query: 360 KLFSELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
            +  +  + D   I    ++  Y   G ++ A+ +F  M N+ +++W +MIVG  QNG  
Sbjct: 351 GVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHN 410

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            EA++LF  M +     + +++A+V+S CA+++ LE G+Q+  +      +    +S S+
Sbjct: 411 DEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSI 470

Query: 478 VDFYCKCG 485
           V  Y + G
Sbjct: 471 VTMYARSG 478



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 243/493 (49%), Gaps = 69/493 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  VG+++H   +K G L+S +P+AN +L MY +CG+   A  +F+ M
Sbjct: 165 LTNVLSSCAATEARGVGRKVHSFVVKLG-LSSCVPVANSVLNMYGKCGDAETARAVFERM 223

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  SWNAM+     LG  + +L LF  MP +   SWN +I+G               
Sbjct: 224 PERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAG--------------- 268

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                           Y +NG   +A+  F  + S     +  D F + +V+ ACA+L  
Sbjct: 269 ----------------YNQNGLNAKALWFFSRMLS--YSTMAPDEFTITSVLSACANLGM 310

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALI 245
           +  GKQ+H++IL + + +   + ++L+++Y K G   +A  V+   +M + +    +AL+
Sbjct: 311 VSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALL 370

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G M  AR +FD  ++   V W +MI GY  N  + EA+ LF  M R+G   ++ 
Sbjct: 371 EGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSY 430

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T+A+VLS C+SL  LE+GKQ+H                               CK    L
Sbjct: 431 TVAAVLSVCASLACLEYGKQIH-------------------------------CKAIRSL 459

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   + + N+++T+Y+  G +  A+ +F R    K  ++W SMIV L+Q+G   +A+ LF
Sbjct: 460 QEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLF 519

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCK 483
             M ++ ++ D+ +   V+SAC ++  ++ G++ F ++    G+  +      +VD   +
Sbjct: 520 EEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLAR 579

Query: 484 CGFIKMDEYYLMQ 496
            G     + ++ Q
Sbjct: 580 AGLFSEAQEFIQQ 592



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 189/435 (43%), Gaps = 109/435 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP----IANRLLQMYMRCGNPTDALLL 63
           +  +L +C     + +GKQ+H +     IL S +P    + N L+ MY + G+  +A   
Sbjct: 298 ITSVLSACANLGMVSIGKQVHAY-----ILRSRMPYIGQVTNALISMYAKSGSVENA--- 349

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
                            G M+            VM   N  S+  L+ G+ K G++K AR
Sbjct: 350 ----------------RGVMQQA----------VMADLNVISFTALLEGYVKLGDMKHAR 383

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+ M  R+ +AW +MI  Y +NG   EA+ LF+ +   +    + +++ +A V+  CA
Sbjct: 384 EMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLM---IRSGPEPNSYTVAAVLSVCA 440

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            LA LEYGKQIH                                + +  ++E      ++
Sbjct: 441 SLACLEYGKQIHC-------------------------------KAIRSLQEQSSSVSNS 469

Query: 244 LISGYANCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           +++ YA  G +  ARRVFDR      +V W SMI     +    +A+ LF +M R GV  
Sbjct: 470 IVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKP 529

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
           D  T   VLSAC+ +GF++ GK+       K G++ ++   + ++D  ++ G+ S+A + 
Sbjct: 530 DRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEF 589

Query: 362 FSELKVY-DTILLNTMIT----------------------------------VYSSCGRI 386
             ++ V  D I   ++++                                  VYS+CGR 
Sbjct: 590 IQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRW 649

Query: 387 EDAKHIFRTMPNKSL 401
            DA  I++   +KS+
Sbjct: 650 NDAAKIWKRRKDKSV 664



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 165/321 (51%), Gaps = 8/321 (2%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD-----FNSANQVL 230
           A ++  C   A    G+ IH+  +  GL   + L ++L++ Y          F  A ++ 
Sbjct: 27  ARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLF 86

Query: 231 NMMK--EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + +   + + F  ++L+S YA  G++ DAR VF    +   V W  M+ G        EA
Sbjct: 87  DEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEA 146

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           + +F  M  +G+     TL +VLS+C++      G++VH    K+G+   V VA+++L+ 
Sbjct: 147 IKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNM 206

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G    A  +F  +        N M+++ +  GR++ A  +F  MP+++++SWN++I
Sbjct: 207 YGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVI 266

Query: 409 VGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
            G +QNG   +AL  F  M +   +  D+F++ SV+SACAN+  + +G+QV A +    +
Sbjct: 267 AGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRM 326

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
                ++ +L+  Y K G ++
Sbjct: 327 PYIGQVTNALISMYAKSGSVE 347



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 7/190 (3%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS-----D 357
           D+   A +L  C +      G+ +H  A K G++    + + LL  Y+           +
Sbjct: 22  DSDHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFRE 81

Query: 358 ACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           A +LF E+     +    N+++++Y+  GR+ DA+ +F  MP +  +SW  M+VGL++ G
Sbjct: 82  ARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVG 141

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EA+ +F +M    L   +F+L +V+S+CA   +  +G +V + V  +GL S   ++ 
Sbjct: 142 RFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVAN 201

Query: 476 SLVDFYCKCG 485
           S+++ Y KCG
Sbjct: 202 SVLNMYGKCG 211


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 151/491 (30%), Positives = 241/491 (49%), Gaps = 80/491 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   S+  G+++H      G L+S   +AN L+ MY R G+  DA  +F  +  R
Sbjct: 116 VLGACS---SLAQGREIHNRVFYSG-LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR 171

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFA------------- 114
           +  SWNA+I    + G    +L++F  M    + N  ++  +ISGF+             
Sbjct: 172 DETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 115 ----------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                                 K G    AR +F+ M +R+ ++WN MI CYV NG   E
Sbjct: 232 EIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHE 291

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ L+++L+ +  +R +       +++GAC+ + AL  G+ +HSHIL  GLD +  + ++
Sbjct: 292 ALELYQKLDMEGFKRTKA---TFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR---VFDRTTDTSS 269
           LVN+Y KCG    A +V N MK  D    S LI  YA+ G   DAR+   VFDR     +
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           + WN+MI+ Y+ N     A+ +F +M    G+  DA T  +VL AC+SLG L   K +H 
Sbjct: 409 ISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              +                              SEL+  + ++ NT+I +Y+ CG +E+
Sbjct: 469 QISE------------------------------SELES-NVVVTNTLINMYARCGSLEE 497

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F     K+++SW +M+   SQ G   EALDLF  M+   ++ D  +  S++  C +
Sbjct: 498 AERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTH 557

Query: 449 ISSLELGEQVF 459
             SLE G + F
Sbjct: 558 GGSLEQGWRYF 568



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/535 (27%), Positives = 260/535 (48%), Gaps = 80/535 (14%)

Query: 1   MDTRIDYLARL--LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           MD + D +  L  L SC++   +  G+ LH           T+ + N L+ MY +C +  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTM-VGNALISMYGKCDSLV 59

Query: 59  DALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLF--------------------- 95
           DA  +F+ M   +RN  SWNAMI  + + GH  ++L L+                     
Sbjct: 60  DARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGA 119

Query: 96  -NVMPQKNDFS--------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
            + + Q  +                 N L++ +A+ G +  A+ +F  +  R+  +WN++
Sbjct: 120 CSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  + ++G    A+R+FKE+  D+    + ++     VI   +    L  G++IH+ I+ 
Sbjct: 180 ILAHSQSGDWSGALRIFKEMKCDV----KPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           NG D D V+ ++L+N+YGK                               CG  ++AR V
Sbjct: 236 NGFDTDLVVATALINMYGK-------------------------------CGSSHEAREV 264

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD+      V WN MI  Y+ N +  EAL L+ K+   G     +T  S+L ACSS+  L
Sbjct: 265 FDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL 324

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G+ VH H  + G+  +V VA+AL++ Y+K G   +A K+F+ +K  D +  +T+I  Y
Sbjct: 325 AQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAY 384

Query: 381 SSCGRIED---AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDK 436
           +S G  +D   A+ +F  + ++  ISWN+MI    QNG  + A+ +F  M     L+ D 
Sbjct: 385 ASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDA 444

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            +  +V+ ACA++  L   + + A+++   L+S+ +++ +L++ Y +CG ++  E
Sbjct: 445 VTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAE 499


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  235 bits (599), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/413 (31%), Positives = 215/413 (52%), Gaps = 33/413 (7%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F +N +I  + KLG  + +  +F+ +PQ N FSWN L+S ++K G L+  + +F+ MP  
Sbjct: 41  FLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNH 100

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           + ++WNS++  Y  NG   E+VR++  +  D    +  +    +T++   ++   ++ G+
Sbjct: 101 DVVSWNSLLSGYAGNGLISESVRVYNMMLKD--GSVNLNRITFSTMLILSSNRGFVDLGR 158

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH  I   G      +GS LV++Y K G  N AN++   + E +    + +I+G   C 
Sbjct: 159 QIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCR 218

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            + +A ++FD   +  S+ W ++I+G   N    EA+  F +M   G   D  T  SVL+
Sbjct: 219 FIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLT 278

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC     L+ GKQ+H +  +    D++ V SALLD Y K                     
Sbjct: 279 ACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK--------------------- 317

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                     C  ++ A+ +FR M +K++ISW +M+VG  QNG   EA+ +FC+M + ++
Sbjct: 318 ----------CRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEI 367

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             D F+L SVIS+CAN++SLE G Q   +    GL     +S +L+  Y KCG
Sbjct: 368 HPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCG 420



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 174/301 (57%), Gaps = 1/301 (0%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K++H  I+    + ++ L ++L+N YGK GD  +A  V + + +P+ F  + L+S Y+  
Sbjct: 25  KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASV 310
           G + D +RVFD   +   V WNS++SGY  N   +E++ +++ M ++G +  +  T +++
Sbjct: 85  GYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTM 144

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L   S+ GF++ G+Q+HG   K G    + V S L+D Y+K G  +DA ++F E+   + 
Sbjct: 145 LILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNI 204

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           ++ NTMIT    C  I +A+ +F  MP K  ISW ++I GL+QNG   EA+D F  M   
Sbjct: 205 VVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIE 264

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
              MD+F+  SV++AC    +L+ G+Q+ A +       +  + ++L+D YCKC  +K  
Sbjct: 265 GFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYA 324

Query: 491 E 491
           E
Sbjct: 325 E 325



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 188/408 (46%), Gaps = 67/408 (16%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI +   L+ S N    + +G+Q+H    K G   S L + + L+ MY + G   DA  +
Sbjct: 138 RITFSTMLILSSNRGF-VDLGRQIHGQIFKFG-YQSYLFVGSPLVDMYAKTGFINDANRI 195

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           F+E+                               P+KN   +N +I+G  +   +  A 
Sbjct: 196 FEEI-------------------------------PEKNIVVYNTMITGLLRCRFIVEAE 224

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF++MP +++I+W ++I    +NG  +EAV  FKE+    +E    D F   +V+ AC 
Sbjct: 225 QLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMG---IEGFCMDQFTFGSVLTACG 281

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
              AL+ GKQIH++I+      +  +GS+L+++Y K                        
Sbjct: 282 GFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK------------------------ 317

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                  C  +  A  VF +    + + W +M+ GY  N    EA+ +F  M+RN +  D
Sbjct: 318 -------CRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPD 370

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             TL SV+S+C++L  LE G Q HG A   G+I  V V++AL+  Y K G    A +LF 
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFH 430

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
           E+K+ D +    +++ Y+  G+  +   +F TM    ++      VG+
Sbjct: 431 EMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGV 478


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 259/561 (46%), Gaps = 85/561 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC       +GKQ+H H +K G  ++   I  +LLQMY RCG   DA  LF+ MP
Sbjct: 66  ASVLDSCKCPK---LGKQVHAHTIKTG-FDADGFIDTKLLQMYARCGLLKDADFLFETMP 121

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--------------------------- 101
            RN  SW A++  ++  G  E++  LF V+                              
Sbjct: 122 MRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQ 181

Query: 102 ------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                       N +  N LI  + K G L  A+ +   MP R+++ WNS+I     NG 
Sbjct: 182 LHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGM 241

Query: 150 AREAVRLFKELNS----------------------------DLVERLQCDAFI-----LA 176
             EA+   +++ S                            +++ R+Q +  +     LA
Sbjct: 242 VYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLA 301

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            V+ ACA L  L+ GKQ+H +I  +    + V+ ++LV++Y +CGD   A ++       
Sbjct: 302 GVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVK 361

Query: 237 DDFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           +    + +I GY   G ++ A+ +FD       +   + WNS+ISGY+ N    EA  +F
Sbjct: 362 NVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMF 421

Query: 293 HKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
             M    G+  D+ TL SVL+AC+    L  GK++H  A   G+  D  V  AL++ YSK
Sbjct: 422 QNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSK 481

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSM 407
               + A   F E+   D    N +I+ Y+   +IE  +++   M     + ++ +WNS+
Sbjct: 482 CQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSI 541

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL +N      + LF  M    LR D +++  ++ AC+ +++LE G+Q  A     G 
Sbjct: 542 LAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGY 601

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
           D+D  I  +LVD Y KCG +K
Sbjct: 602 DTDVHIGAALVDMYAKCGSLK 622



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 230/486 (47%), Gaps = 73/486 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     + +GKQLH +  +   +++ + + N L+ +Y RCG+           
Sbjct: 300 LAGVLPACARLQRLDLGKQLHGYITRHDFISNPV-VVNALVDVYRRCGD----------- 347

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                            +G   K    F+V   KN  S N +I G+ ++G++  A+ LF+
Sbjct: 348 -----------------MGGAAKIFLKFSV---KNVLSCNTMIVGYCESGDVSKAKELFD 387

Query: 128 DMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            M      R  I+WNS+I  YVRN    EA  +F+  N  + E ++ D+F L +V+ ACA
Sbjct: 388 CMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQ--NMLMEEGIEPDSFTLGSVLTACA 445

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           D  +L  GK+IH+  +V GL  D+ +G +LV +Y KC D  +A    + + E D    +A
Sbjct: 446 DTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNA 505

Query: 244 LISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
           LISGY    ++   + + ++        +   WNS+++G + N +    + LF +M+ + 
Sbjct: 506 LISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISK 565

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D  T+  +L ACS L  LE GKQ H H+ K G   DV + +AL+D Y+K        
Sbjct: 566 LRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAK-------- 617

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                                  CG ++ A+  +  + N +L+S N+M+   + +G   E
Sbjct: 618 -----------------------CGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHGEE 654

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
            + LF  M  L    D  +  SV+S+C ++ S+E G + F  +    +       TS+VD
Sbjct: 655 GISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYYNVKPTLKHYTSMVD 714

Query: 480 FYCKCG 485
              + G
Sbjct: 715 LLSRSG 720



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 176/402 (43%), Gaps = 75/402 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    S+  GK++H   + KG+ + T  +   L++MY +C + T A + FDE 
Sbjct: 437 LGSVLTACADTISLRQGKEIHAQAIVKGLQSDTF-VGGALVEMYSKCQDLTAAQVAFDE- 494

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                        VM +K+  +WN LISG+ ++ +++  + L  
Sbjct: 495 -----------------------------VM-EKDVPTWNALISGYTRSNQIERIQYLLE 524

Query: 128 DMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            M       N   WNS++   V N      ++LF E+    + +L+ D + +  ++ AC+
Sbjct: 525 KMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQ---ISKLRPDIYTVGIILPACS 581

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            LA LE GKQ H+H +  G D D  +G++LV++                           
Sbjct: 582 RLATLERGKQAHAHSIKCGYDTDVHIGAALVDM--------------------------- 614

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
               YA CG +  A+  +DR ++ + V  N+M++    +    E + LF  M   G + D
Sbjct: 615 ----YAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPD 670

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  SVLS+C  +G +E G +         V   +   ++++D  S+ G   +A +L  
Sbjct: 671 HVTFLSVLSSCVHVGSVETGCEFFDLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIK 730

Query: 364 ELKVY-DTILLNTMITVYSSCGRIE----DAKHIFRTMPNKS 400
           ++ V  D++L   ++    + G IE     A+ +    PN S
Sbjct: 731 KMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNNS 772



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 16/233 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++  GKQ H H +K G  ++ + I   L+ MY +CG+   A L +D +   
Sbjct: 576 ILPACSRLATLERGKQAHAHSIKCG-YDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNP 634

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           N  S NAM+      GH E+ + LF  M       +  ++  ++S     G ++T    F
Sbjct: 635 NLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFF 694

Query: 127 NDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           + M   N       + SM+    R+G   EA  L K++       ++CD+ +   ++G C
Sbjct: 695 DLMGYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKM------PVECDSVLWGALLGGC 748

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                +E G +I +  L+     +S     L NL+     +    +V  MMK+
Sbjct: 749 VTHGNIELG-EIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKD 800


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 265/553 (47%), Gaps = 99/553 (17%)

Query: 1   MDTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D +ID    A LL+SC T   +++GKQ+H H LK G       +  +LLQMY R G   
Sbjct: 56  LDKQIDSSTYASLLESCRT---LNLGKQVHAHTLKTGFHGHEF-VETKLLQMYGRFGCLD 111

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------VMPQ------ 100
           DA L+F +MP+RN +SW A++   +  G+ E++L LF             V P       
Sbjct: 112 DANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCG 171

Query: 101 ----------------------------------KNDFSWNMLISGFAKAGELKTARTLF 126
                                             KN  S+N +I G+ + G ++ A+ LF
Sbjct: 172 GLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELF 231

Query: 127 NDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           + M    ++ I+WNSMI  Y  N    EA+ +F++L  +  E ++ D+F L +V+ ACAD
Sbjct: 232 DQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLME--EGIEADSFTLGSVLAACAD 289

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           +A+L  GK++H+  +V GL +++ +G +LV +Y KC D  +A    + + E D    + L
Sbjct: 290 MASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVL 349

Query: 245 ISGYANCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           ISGYA C ++ + + +  +      + +   WN +ISG++ N  +  AL LF +M+ + +
Sbjct: 350 ISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSL 409

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T+  +L AC+ L  +  GKQVH H+ + G   DV + +AL+D Y+K G    A +
Sbjct: 410 RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQ 469

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +++ +   + +  N M+T Y                               + +G   E 
Sbjct: 470 VYNRISNPNLVSQNAMLTAY-------------------------------AMHGHGDEG 498

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           + LF NM     R D  +  SV+S+C +  ++E G + F  +T   +       T +VD 
Sbjct: 499 IALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDL 558

Query: 481 YCKCGFIKMDEYY 493
             + G  ++DE Y
Sbjct: 559 LSRAG--RLDEAY 569


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 243/522 (46%), Gaps = 106/522 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           DY+ +LLQSC     + VGKQ+H H L+ G+    + I N LL++Y  CG+  +A  LFD
Sbjct: 30  DYV-KLLQSCVKAKDLAVGKQVHEHILRCGV-KPNVYITNTLLKLYAHCGSVNEARQLFD 87

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-------------SW 106
           +   ++  SWN MI G+   G  +++  LF +M      P K  F             +W
Sbjct: 88  KFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNW 147

Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N LIS +AK G ++ AR +F+ M  R+ ++W ++   Y  
Sbjct: 148 GREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 207

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G+  E+++ +  +   L ER++        V+ AC  LAALE GKQIH+HI+ +    D
Sbjct: 208 SGYGEESLKTYHAM---LQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + ++L  +Y KC                               G   DAR VF+  + 
Sbjct: 265 VRVSTALTKMYMKC-------------------------------GAFKDAREVFECLSY 293

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              + WN+MI G++ + +  EA   FH+M   GV  D +T  +VLSAC+  G L  GK++
Sbjct: 294 RDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEI 353

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  A K G++ DV   +AL++ YSK G   DA ++F  +   D +   T++  Y+ C ++
Sbjct: 354 HARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQV 413

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                                          +E+   F  M +  ++ +K +   V+ AC
Sbjct: 414 -------------------------------VESFTTFKQMLQQGVKANKITYMCVLKAC 442

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +N  +L+ G+++ A V   GL +D  ++ +L+  Y KCG ++
Sbjct: 443 SNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVE 484



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 227/521 (43%), Gaps = 106/521 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++   ++ G+++H+  ++ G+ N T  + N L+ MY +CG+  DA  +FD M  R
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTT-VGNALISMYAKCGSVRDARRVFDAMASR 193

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           +  SW  +   + + G+ E+SL+ ++ M Q+                             
Sbjct: 194 DEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIH 253

Query: 102 -----NDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                +++  ++ +S      + K G  K AR +F  +  R+ IAWN+MI  +V +G   
Sbjct: 254 AHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLE 313

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA   F  +   L E +  D     TV+ ACA    L  GK+IH+    +GL  D   G+
Sbjct: 314 EAHGTFHRM---LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGN 370

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+N+Y K G                                M DAR+VFDR      V 
Sbjct: 371 ALINMYSKAGS-------------------------------MKDARQVFDRMPKRDVVS 399

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +++  Y   ++  E+   F +M + GV  +  T   VL ACS+   L+ GK++H    
Sbjct: 400 WTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVV 459

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G++ D+ V +AL+  Y K G   DA ++F  + + D +  NT+I              
Sbjct: 460 KAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIG------------- 506

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             GL QNG  +EAL  +  M    +R +  +  +V+SAC   + 
Sbjct: 507 ------------------GLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNL 548

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +E G + FA ++   G+   +     +VD   + G ++  E
Sbjct: 549 VEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAE 589



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 140/320 (43%), Gaps = 62/320 (19%)

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           Q D++    ++ +C     L  GKQ+H HIL  G+  +  + ++L+ LY  CG  N A Q
Sbjct: 25  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQ 84

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           +       D F   +++S                         WN MISGY       EA
Sbjct: 85  LF------DKFSNKSVVS-------------------------WNVMISGYAHRGLAQEA 113

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             LF  M++  +  D  T  S+LSACSS   L  G+++H    + G+ +D  V +AL+  
Sbjct: 114 FNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISM 173

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K G   DA ++F  +   D +                               SW ++ 
Sbjct: 174 YAKCGSVRDARRVFDAMASRDEV-------------------------------SWTTLT 202

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
              +++G   E+L  +  M +  +R  + +  +V+SAC ++++LE G+Q+ A +      
Sbjct: 203 GAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH 262

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           SD  +ST+L   Y KCG  K
Sbjct: 263 SDVRVSTALTKMYMKCGAFK 282



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 31/198 (15%)

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +   + R G   D+     +L +C     L  GKQVH H  + GV  +V + + LL  Y+
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
             G  ++A +LF +      +  N MI+ Y+                            G
Sbjct: 75  HCGSVNEARQLFDKFSNKSVVSWNVMISGYAH--------------------------RG 108

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           L+Q     EA +LF  M +  L  DKF+  S++SAC++ + L  G ++  RV   GL +D
Sbjct: 109 LAQ-----EAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLAND 163

Query: 471 QIISTSLVDFYCKCGFIK 488
             +  +L+  Y KCG ++
Sbjct: 164 TTVGNALISMYAKCGSVR 181



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           +I Y+  +L++C+   ++  GK++H   +K G+L + L + N L+ MY +CG+  DA+ +
Sbjct: 432 KITYMC-VLKACSNPVALKWGKEIHAEVVKAGLL-ADLAVTNALMSMYFKCGSVEDAIRV 489

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGEL 119
           F+ M  R+  +WN +I G  + G   ++LQ + VM     + N  ++  ++S       +
Sbjct: 490 FEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLV 549

Query: 120 KTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           +  R  F  M +   I      +  M+    R G  REA  +       L   L+  A +
Sbjct: 550 EEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVI------LTIPLKPSAAM 603

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
              ++ AC     +E G++   H L      ++ L  SL  +Y   G +    ++   MK
Sbjct: 604 WGALLAACRIHCNVEIGERAAEHCLKLEPQ-NAGLYVSLSAIYAAAGMWRDVAKLRKFMK 662

Query: 235 E 235
           E
Sbjct: 663 E 663


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  234 bits (597), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 241/446 (54%), Gaps = 46/446 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  +Q   R G   +A  +F+EM +R+  SWN+MI G+ + G  +++  LF+    KN  
Sbjct: 43  NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR 102

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W +L++G+AK G ++ AR +F  M  RN ++WN+MI  YV+NG  + A +LF E+    
Sbjct: 103 TWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKN 162

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           V          + V G C     +   +++   +     + +SV    +++ Y    D+ 
Sbjct: 163 VASWN------SVVTGYC-HCYRMSEARELFDQMP----ERNSVSWMVMISGYVHISDYW 211

Query: 225 SANQV-LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD-TSSVMWNSMISGYISN 282
            A  V + M +  +++  + +I+ +A CG+++DA ++++R  + T+S  W +MI+G++ N
Sbjct: 212 EAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQN 271

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
            E  EAL L  ++ R+G +   S+  S LSAC+++G +E G+ +H  A K G        
Sbjct: 272 EESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTG-------- 323

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT--MPNKS 400
                           C+       +++ ++N +I++Y+ CG +ED  H+FRT  MP + 
Sbjct: 324 ----------------CQ-------FNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRD 360

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           ++SW ++I    Q G    ALDLF +M    ++ ++ ++ S++SAC N+ +++LGEQ  A
Sbjct: 361 VVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHA 420

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGF 486
            +  +G D+   +  SL+  Y KCG+
Sbjct: 421 LIFKLGFDTFLFVGNSLITMYFKCGY 446



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 206/452 (45%), Gaps = 71/452 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KND 103
           N ++  Y  C   ++A  LFD+MP RN  SW  MI G++ +    ++  +F  M + +N+
Sbjct: 167 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTRNE 226

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           +SW  +I+ FA+ G L  A  L+  +P + N+ +W +MI  +V+N  +REA+ L  EL+ 
Sbjct: 227 YSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHR 286

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                +  D+    + + ACA++  +E G+ IHS  +  G  F+S               
Sbjct: 287 S--GSVPSDS-SFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS--------------- 328

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--RTTDTSSVMWNSMISGYI 280
                           + ++ LIS YA CG + D   VF   R      V W ++IS Y+
Sbjct: 329 ----------------YVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYV 372

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
                  AL LF  M   G+  +  T+ S+LSAC +LG ++ G+Q H    K+G    + 
Sbjct: 373 QAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLF 432

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V ++L+  Y K                               CG  ED   +F  MP   
Sbjct: 433 VGNSLITMYFK-------------------------------CG-YEDGFCVFEEMPEHD 460

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           LI+WN+++VG +QNG   EA+ +F  M    +  D+ S   V+ AC++   ++ G   F 
Sbjct: 461 LITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFN 520

Query: 461 RVT-IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            +T   G+       T +VD   + G++   E
Sbjct: 521 SMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAE 552


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 238/449 (53%), Gaps = 35/449 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q+C+   S    KQ+H H LK G  +S + + N L+  +  C N TDA  +F+E    
Sbjct: 219 LIQACSIRRSEWEAKQVHNHVLKLG-FDSDVYVRNTLINCFSVCSNMTDACRVFNESSVL 277

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+++ G++++G+ E++  +++ MP+++  + N +I  F   G +  A  LF++M 
Sbjct: 278 DSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML 337

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ + W+++I C+ +N    EA+R F  ++   V     D  +  + + ACA+L  +  
Sbjct: 338 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV---MVDEVVAVSALSACANLLVVNM 394

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IHS  L  G +    L ++L+ +Y KCGD   A ++ +     D    +++ISGY  
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           C  +++A+ +FD   +   V W+SMISGY  N+   E L LF +M+ +G   D +TL SV
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SAC+ L  LE GK VH +  + G+  +VI+ + L+D Y K                   
Sbjct: 515 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMK------------------- 555

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +E A  +F  M  K + +WN++I+GL+ NG    +LD+F NM K 
Sbjct: 556 ------------CGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKC 603

Query: 431 DLRMDKFSLASVISACANISSLELGEQVF 459
            +  ++ +   V+ AC ++  ++ G+  F
Sbjct: 604 HVTPNEITFMGVLGACRHMGLVDEGQHHF 632



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 188/376 (50%), Gaps = 34/376 (9%)

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y++      A  L+K + S+    L  D +    +I AC+   +    KQ+H+H+L  G 
Sbjct: 188 YIQTNSPHFAFTLYKSMLSNY---LGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGF 244

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR----- 258
           D D  + ++L+N +  C +   A +V N     D    +++++GY   G + +A+     
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 304

Query: 259 --------------------------RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                                     ++FD   +   V W+++I+ +  N    EA+  F
Sbjct: 305 MPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTF 364

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             M + GV+ D     S LSAC++L  +  GK +H  + K+G    + + +AL+  YSK 
Sbjct: 365 VGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC 424

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G    A KLF E  + D I  N+MI+ Y  C  +++AK IF +MP K ++SW+SMI G +
Sbjct: 425 GDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYA 484

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           QN    E L LF  M     + D+ +L SVISACA +++LE G+ V A +   GL  + I
Sbjct: 485 QNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVI 544

Query: 473 ISTSLVDFYCKCGFIK 488
           + T+L+D Y KCG ++
Sbjct: 545 LGTTLIDMYMKCGCVE 560


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 235/494 (47%), Gaps = 72/494 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+    I+ GKQ+H    K G    +      L+ MY +C N  DA L+FD  
Sbjct: 145 FAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSF-CQGGLIDMYAKCRNLRDARLVFDGA 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              +  SW  +I G+++ G   +++++F+ M +     +  +   +I+ +   G L  AR
Sbjct: 204 LNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADAR 263

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF  +P  N +AWN MI  + + GFA EA+  F EL    ++  +     L +V+ A A
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSS---LGSVLSAIA 320

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L+ L YG  +H+  +  GLD +  +GS+LVN+Y KC   ++A QV N + E        
Sbjct: 321 SLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE-------- 372

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                         R +         V+WN+M+ G+  N    E +  F  M+R+G   D
Sbjct: 373 --------------RNI---------VLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPD 409

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  S+ SAC+SL +L+ G Q+H    K     ++ VA+AL+D Y+K G   +A K F 
Sbjct: 410 EFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFE 469

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +K++D +                               SWN++IVG  Q     EA  +
Sbjct: 470 FMKIHDNV-------------------------------SWNAIIVGYVQEEYNDEAFFM 498

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M    +  D+ SLAS++SACAN+   + G+Q    +  +GLD+     +SL+D Y K
Sbjct: 499 FRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558

Query: 484 CGFI--KMDEYYLM 495
           CG +    D +Y M
Sbjct: 559 CGVVLAARDVFYSM 572



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 198/417 (47%), Gaps = 69/417 (16%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N+++  + K G +  A+  F+ + +++  AWNS++  Y+ +G     V+ F  + +  V 
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGV- 138

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + + F  A V+ AC+ L  + YGKQ+H  +   G  F S     L+++Y KC +   A
Sbjct: 139 --RPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDA 196

Query: 227 N-------------------------------QVLNMMKE----PDDFCLSALISGYANC 251
                                           +V + M+     PD   L  +I+ Y   
Sbjct: 197 RLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVAL 256

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G++ DAR++F +  + + V WN MISG+       EA+  F ++++ G+    S+L SVL
Sbjct: 257 GRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVL 316

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           SA +SL  L +G  VH  A K G+ D+V V SAL++ Y+K                    
Sbjct: 317 SAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAK-------------------- 356

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      C +++ AK +F ++  ++++ WN+M+ G +QNG   E ++ F  M +  
Sbjct: 357 -----------CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHG 405

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            + D+F+  S+ SACA++  L+ G Q+   +      S+  ++ +LVD Y K G +K
Sbjct: 406 PQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALK 462



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 235/521 (45%), Gaps = 106/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +  +   ++ G  +H   +K+G L+  + + + L+ MY +C     A  +F+ +
Sbjct: 312 LGSVLSAIASLSMLNYGSMVHAQAIKEG-LDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW----------------- 106
             RN   WNAM+ GF + G  ++ ++ F+ M    PQ ++F++                 
Sbjct: 371 GERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGG 430

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+  +AK+G LK AR  F  M   + ++WN++I  YV+  
Sbjct: 431 QLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEE 490

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +  EA  +F+ + S+ V     D   LA+++ ACA++   + G+Q H  ++  GLD  + 
Sbjct: 491 YNDEAFFMFRRMVSNGVLP---DEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTC 547

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GSSL+++Y KCG   +A  V   M   +   ++ALI+GY                    
Sbjct: 548 AGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT------------------- 588

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                      +S+ E  EA+ LF +++  G+     T A +L  C     L  G+Q+HG
Sbjct: 589 -----------MSHLE--EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHG 635

Query: 329 HACKVGVIDDV-IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
              K G +    +V  +LL  Y      +D+  LFSEL+                     
Sbjct: 636 QVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQY-------------------- 675

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                      K L+ W ++I G +Q     +AL  + +M   ++  D+ + ASV+ ACA
Sbjct: 676 ----------PKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACA 725

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +SSL+ G++V + +   G + D+I  +SL+D Y KCG +K
Sbjct: 726 GMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVK 766



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 214/490 (43%), Gaps = 107/490 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +  +C + H +  G QLH   +K     S L +AN L+ MY + G   +A   F+ M   
Sbjct: 416 IFSACASLHYLDFGGQLHTVMIKNK-FTSNLFVANALVDMYAKSGALKEARKQFEFMKIH 474

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK-------------NDF------- 104
           +  SWNA+I G+++  + +++  +F       V+P +              +F       
Sbjct: 475 DNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCH 534

Query: 105 -------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                        + + LI  + K G +  AR +F  MP RN ++ N++I  Y  +    
Sbjct: 535 CLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHL-E 593

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+E+    +  L+      A ++  C     L  G+QIH  ++            
Sbjct: 594 EAIHLFQEIQ---MVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVM------------ 638

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-V 270
                  K G  +S+  V          C+S L+  Y N  +  D+  +F         V
Sbjct: 639 -------KWGFLSSSEMV----------CVS-LLCMYMNSQRFADSETLFSELQYPKGLV 680

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +W ++ISGY   N   +AL  +  MR + +L D +T ASVL AC+ +  L+ G++VH   
Sbjct: 681 VWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLI 740

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G   D I  S+L+D Y+K                               CG ++ + 
Sbjct: 741 FHTGFNMDEITCSSLIDMYAK-------------------------------CGDVKGSL 769

Query: 391 HIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +F  MP + S+ISWNSMIVGL++NG   EAL++F  M +  +  D+ +   V+SAC++ 
Sbjct: 770 QVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829

Query: 450 SSLELGEQVF 459
             +  G +VF
Sbjct: 830 GRVSEGRKVF 839



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 159/343 (46%), Gaps = 68/343 (19%)

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A L AL   K IHS  L  G+    +LG+ +V+LY KCG+               DF   
Sbjct: 52  AVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNV--------------DF--- 94

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                         A++ F R        WNS++S Y+ +      +  F  M  +GV  
Sbjct: 95  --------------AQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRP 140

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHA----------CKVGVID--------------- 337
           +  T A VLSACS L  + +GKQVH             C+ G+ID               
Sbjct: 141 NEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVF 200

Query: 338 ------DVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIE 387
                 D +  + L+  Y + G P +A K+F +++    V D I L T+I  Y + GR+ 
Sbjct: 201 DGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLA 260

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA+ +F  +PN ++++WN MI G ++ G   EA+  F  + K  L+  + SL SV+SA A
Sbjct: 261 DARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIA 320

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           ++S L  G  V A+    GLD +  + ++LV+ Y KC   KMD
Sbjct: 321 SLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCS--KMD 361


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 163/549 (29%), Positives = 250/549 (45%), Gaps = 100/549 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S    + +H   L     +  + I NRL+ +Y +C    DA  LFD M
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQ-FSMEIFIQNRLIDVYGKCDCLDDARKLFDRM 76

Query: 68  PRRNCF-------------------------------SWNAMIEGFMKLGHKEKSLQLFN 96
           P+RN F                               SWN+M+ GF +    E+SL+ F 
Sbjct: 77  PQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFV 136

Query: 97  VMPQK----NDFSW-------------NM----------------------LISGFAKAG 117
            M ++    N++S+             NM                      LI  ++K G
Sbjct: 137 KMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCG 196

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            +  A  +F+ M  RN + WNS+I CY +NG A EA+ +F  +   +   L+ D   LA+
Sbjct: 197 SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRM---MDSGLEPDEVTLAS 253

Query: 178 VIGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           V+ ACA L AL+ G QIH+ ++  N    D VLG++LV++Y KC   N A +V + M   
Sbjct: 254 VVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           +    ++++SGYA    +  AR +F + T  + V WN++I+GY  N E+ EAL LF  ++
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           R  +     T  ++LSAC++L  L  G+Q H H  K G                      
Sbjct: 374 RESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGF--------------------- 412

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
                F      D  + N++I +Y  CG IED   +F  M  +  +SWN++IVG +QNG 
Sbjct: 413 ----EFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGY 468

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             EAL +F  M     + D  ++  V+ AC++   +E G   F  +   GL   +   T 
Sbjct: 469 GAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTC 528

Query: 477 LVDFYCKCG 485
           +VD   + G
Sbjct: 529 MVDLLGRAG 537



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 171/406 (42%), Gaps = 74/406 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C +  ++  G Q+H   +K       L + N L+ MY +C    +A  +FD M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             RN  S  +M+ G+ +    + +  +F+ M Q+N  SWN LI+G+ + GE         
Sbjct: 311 SIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGE--------- 361

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                                   EA+RLF+ L     E +    +    ++ ACA+LA 
Sbjct: 362 ----------------------NEEALRLFRLLKR---ESIWPTHYTFGNLLSACANLAD 396

Query: 188 LEYGKQIHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           L  G+Q H+H+L  G +F S       +G+SL+++Y KCG     ++V   MKE D    
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 456

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A+I GYA                                N    EAL +F KM   G  
Sbjct: 457 NAIIVGYAQ-------------------------------NGYGAEALQIFRKMLVCGEK 485

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+  VL ACS  G +E G+       + G+I      + ++D   + G  ++A  L
Sbjct: 486 PDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNL 545

Query: 362 FSELKV-YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
              + V  D ++  +++      G IE  KH    +    +  WNS
Sbjct: 546 IEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKL--LEIDPWNS 589



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 103/199 (51%)

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           H + R+  L ++S  A +L +C         + VH          ++ + + L+D Y K 
Sbjct: 4   HGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKC 63

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
               DA KLF  +   +T   N++I+V +  G +++A  +F +MP     SWNSM+ G +
Sbjct: 64  DCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFA 123

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q+    E+L+ F  M++ D  ++++S  S +SACA +  L +G QV A V+     +D  
Sbjct: 124 QHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVY 183

Query: 473 ISTSLVDFYCKCGFIKMDE 491
           + ++L+D Y KCG +   E
Sbjct: 184 MGSALIDMYSKCGSVACAE 202


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 226/430 (52%), Gaps = 43/430 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N +I+ + K G  E   Q+F+ MPQ+N ++WN +++G  K G L  A +LF  MP R
Sbjct: 56  FIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +   WNSM+  + ++    EA+  F  ++    E    + +  A+V+ AC+ L  +  G 
Sbjct: 116 DQCTWNSMVSGFAQHDRCEEALCYFAMMHK---EGFVLNEYSFASVLSACSGLNDMNKGV 172

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+HS I  +    D  +GS+LV++                               Y+ CG
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDM-------------------------------YSKCG 201

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +NDA+RVFD   D + V WNS+I+ +  N    EAL +F  M  + V  D  TLASV+S
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261

Query: 313 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           AC+SL  ++ G++VHG   K   + +D+I+++A +D Y+K     +A  +F  + + + I
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              +MI+ Y+     + A+ +F  M  ++++SWN++I G +QNG   EAL LFC + +  
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCKCG 485
           +    +S A+++ ACA+++ L LG Q    V   G       + D  +  SL+D Y KCG
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 486 FIKMDEYYLM 495
            +  +E YL+
Sbjct: 442 CV--EEGYLV 449



 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 156/558 (27%), Positives = 259/558 (46%), Gaps = 110/558 (19%)

Query: 8   LARLLQSC--NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            A+LL SC  +   +I+V + +H   +K G  N    I NRL+  Y +CG+  D   +FD
Sbjct: 22  FAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIF-IQNRLIDAYSKCGSLEDGRQVFD 79

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
           +MP+RN ++WN+++ G  KLG  +++  LF  MP+++  +WN ++SGFA+    + A   
Sbjct: 80  KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCY 139

Query: 126 F-------------------------NDMPR--------------RNAIAWNSMIHCYVR 146
           F                         NDM +               +    ++++  Y +
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSK 199

Query: 147 NGFAREAVRLFKEL-----------------NSDLVE-----------RLQCDAFILATV 178
            G   +A R+F E+                 N   VE           R++ D   LA+V
Sbjct: 200 CGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASV 259

Query: 179 IGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           I ACA L+A++ G+++H  ++ N  L  D +L ++ V++Y KC     A  + + M   +
Sbjct: 260 ISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
               +++ISGYA       AR +F +  + + V WN++I+GY  N E+ EAL LF  ++R
Sbjct: 320 VIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR 379

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI------DDVIVASALLDTYSK 351
             V     + A++L AC+ L  L  G Q H H  K G        DD+ V ++L+D Y K
Sbjct: 380 ESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +E+   +FR M  +  +SWN+MI+G 
Sbjct: 440 -------------------------------CGCVEEGYLVFRKMMERDCVSWNAMIIGF 468

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSD 470
           +QNG   EAL+LF  M +   + D  ++  V+SAC +   +E G   F+ +T   G+   
Sbjct: 469 AQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPL 528

Query: 471 QIISTSLVDFYCKCGFIK 488
           +   T +VD   + GF++
Sbjct: 529 RDHYTCMVDLLGRAGFLE 546



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 175/339 (51%), Gaps = 37/339 (10%)

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGAC--ADLAALEYGKQIHSHILVNGLDFDSVLG 210
           A + F +L +DL        F  A ++ +C  + L+A+ Y + +H+ ++ +G   +  + 
Sbjct: 2   ATKSFLKLAADLSSFTDSSPF--AKLLDSCIKSKLSAI-YVRYVHASVIKSGFSNEIFIQ 58

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + L++ Y KCG      QV + M + + +  +++++G    G +++A  +F    +    
Sbjct: 59  NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WNSM+SG+  ++   EAL  F  M + G + +  + ASVLSACS L  +  G QVH   
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K   + DV + SAL+D YSK G  +DA ++F E+   + +  N++IT +          
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCF---------- 228

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                                 QNG  +EALD+F  M +  +  D+ +LASVISACA++S
Sbjct: 229 ---------------------EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLS 267

Query: 451 SLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
           ++++G++V  RV     L +D I+S + VD Y KC  IK
Sbjct: 268 AIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 183/451 (40%), Gaps = 116/451 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+  + ++ G Q+H    K   L S + I + L+ MY +CGN  DA  +FDEM
Sbjct: 155 FASVLSACSGLNDMNKGVQVHSLIAKSPFL-SDVYIGSALVDMYSKCGNVNDAQRVFDEM 213

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             RN  SWN++I  F + G   ++L +F +M +                           
Sbjct: 214 GDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQ 273

Query: 101 -------KND------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIA----------- 136
                  KND         N  +  +AK   +K AR +F+ MP RN IA           
Sbjct: 274 EVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMA 333

Query: 137 --------------------WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-FIL 175
                               WN++I  Y +NG   EA+ LF  L  + V    C   +  
Sbjct: 334 ASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV----CPTHYSF 389

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQV 229
           A ++ ACADLA L  G Q H H+L +G  F S       +G+SL+++Y KCG       V
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 449

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M E D    +A+I G+A  G  N                               EAL
Sbjct: 450 FRKMMERDCVSWNAMIIGFAQNGYGN-------------------------------EAL 478

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDT 348
            LF +M  +G   D  T+  VLSAC   GF+E G+       +  GV       + ++D 
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538

Query: 349 YSKRGMPSDACKLFSELKVY-DTILLNTMIT 378
             + G   +A  +  E+ +  D+++  +++ 
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLA 569


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 142/482 (29%), Positives = 239/482 (49%), Gaps = 71/482 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LLQ C    S+ +GK +HLH    G+      +AN L+ MY +CG+   A  +FDEM
Sbjct: 53  LAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEM 112

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             RN +SWN M+ G+ KLG  + + +LF+ MP+K+  SWN ++  +AK+           
Sbjct: 113 STRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKS----------- 161

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILATVIGACADL 185
                               GF  +A+R ++EL      RL    + +  A ++  C  +
Sbjct: 162 --------------------GFCNDALRFYREL-----RRLGIGYNEYSFAGLLNICVKV 196

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             LE  KQ H  +LV G   + V+ SS+++ Y KC +   A ++ + M   D    + ++
Sbjct: 197 KELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMV 256

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           SGYA  G +  AR +FD   + + V W S+I+GY  ++   +AL LF KM    +  D  
Sbjct: 257 SGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQF 316

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T +S L A +S+  L HGKQ+HG+  +  +  + IV S+L+D YSK              
Sbjct: 317 TFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSK-------------- 362

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLF 424
                            CG +E  + +F  M +K  ++ WN++I  L+Q+G   EA+ +F
Sbjct: 363 -----------------CGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMF 405

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCK 483
            +M +L ++ D+ +L  +++AC++   ++ G +++  +T   G+  +Q     L+D   +
Sbjct: 406 DDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGR 465

Query: 484 CG 485
            G
Sbjct: 466 AG 467



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 202/339 (59%), Gaps = 4/339 (1%)

Query: 155 RLFKELNS-DLVER--LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF-DSVLG 210
           +LF+ ++S  L+ R  ++  +  LA ++  CA+  +L+ GK +H H+ V GL   ++ L 
Sbjct: 30  QLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLA 89

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + L+N+Y KCGD+ SA +V + M   + +  + ++SGYA  GK+  AR++FD+  +   V
Sbjct: 90  NHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVV 149

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN+M+  Y  +    +AL  + ++RR G+  +  + A +L+ C  +  LE  KQ HG  
Sbjct: 150 SWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQV 209

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G + +++++S++LD Y+K     DA +LF E+ + D +   TM++ Y+  G +E A+
Sbjct: 210 LVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAAR 269

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  MP K+ ++W S+I G +++    +AL+LF  M  L++R D+F+ +S + A A+I+
Sbjct: 270 ELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIA 329

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           SL  G+Q+   +    +  + I+ +SL+D Y KCG +++
Sbjct: 330 SLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEV 368



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           ++ LS  G   +A+     +++  +R+   +LA ++  CAN  SL+LG+ V   + + GL
Sbjct: 22  LLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGL 81

Query: 468 D-SDQIISTSLVDFYCKCG 485
              +  ++  L++ Y KCG
Sbjct: 82  KRPNTFLANHLINMYSKCG 100


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 232/484 (47%), Gaps = 65/484 (13%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D LA LLQ C    S+  GK +H H    G       ++N L+ MYM+CG P DA     
Sbjct: 47  DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDAC---- 102

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                                      ++F+ M  +N +SWN ++SG+ K+G L  AR +
Sbjct: 103 ---------------------------KVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVV 135

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+ MP R+ ++WN+M+  Y ++G   EA+  +KE     +   + + F  A ++ AC   
Sbjct: 136 FDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGI---KFNEFSFAGLLTACVKS 192

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             L+  +Q H  +LV G   + VL  S+++ Y KCG   SA +  + M   D    + LI
Sbjct: 193 RQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLI 252

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           SGYA  G M  A ++F    + + V W ++I+GY+       AL LF KM   GV  +  
Sbjct: 253 SGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQF 312

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T +S L A +S+  L HGK++HG+  +  V  + IV S+L+D YSK G    + ++F   
Sbjct: 313 TFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF--- 369

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                              RI D KH          + WN+MI  L+Q+G   +AL +  
Sbjct: 370 -------------------RICDDKH--------DCVFWNTMISALAQHGLGHKALRMLD 402

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKC 484
           +M K  ++ ++ +L  +++AC++   +E G + F  +T+  G+  DQ     L+D   + 
Sbjct: 403 DMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRA 462

Query: 485 GFIK 488
           G  K
Sbjct: 463 GCFK 466



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 194/364 (53%), Gaps = 5/364 (1%)

Query: 130 PRRNAI-AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           PR+  I    S +  +       +AV   + L    + RL  D  +LA+++  C D  +L
Sbjct: 6   PRKRPICVAQSFLSKHATKAELSQAVSRLESLTQQGI-RLPFD--LLASLLQQCGDTKSL 62

Query: 189 EYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           + GK IH H+ + G    +++L + L+ +Y KCG    A +V + M   + +  + ++SG
Sbjct: 63  KQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSG 122

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y   G +  AR VFD   +   V WN+M+ GY  +    EAL  + + RR+G+  +  + 
Sbjct: 123 YVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSF 182

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A +L+AC     L+  +Q HG     G + +V+++ +++D Y+K G    A + F E+ V
Sbjct: 183 AGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTV 242

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D  +  T+I+ Y+  G +E A+ +F  MP K+ +SW ++I G  + GS   ALDLF  M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             L ++ ++F+ +S + A A+I+SL  G+++   +    +  + I+ +SL+D Y K G +
Sbjct: 303 IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSL 362

Query: 488 KMDE 491
           +  E
Sbjct: 363 EASE 366


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 230/485 (47%), Gaps = 67/485 (13%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D LA LLQ C    S+  GK +H H    G       ++N L+ MYM+CG P DA  +FD
Sbjct: 47  DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFD 106

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
           +M  RN +SWN M+ GF+K G   ++  +F+ MP+++  SWN ++ G+A+ G L  A   
Sbjct: 107 QMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWF 166

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F ++ RR+ I +N                                  F  A ++ AC   
Sbjct: 167 FKEL-RRSGIKFNE---------------------------------FSFAGLLTACVKS 192

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             L+  +Q H  +LV G   + VL  S+++ Y KCG   SA +  + M   D    + LI
Sbjct: 193 RQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLI 252

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           SGYA  G M  A ++F    + + V W ++I+GY+       AL LF KM    V  +  
Sbjct: 253 SGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQF 312

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T +S L A +S+  L HGKQ+HG+  +  V  + IV S+L+D YSK              
Sbjct: 313 TFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSK-------------- 358

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLF 424
                             G +E ++ +FR   +K   + WN+MI  L+Q+G   +AL + 
Sbjct: 359 -----------------SGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQML 401

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCK 483
            +M K  +  ++ +L  +++AC++   +E G + F  +T+  G+  DQ     L+D   +
Sbjct: 402 DDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGR 461

Query: 484 CGFIK 488
            G  K
Sbjct: 462 AGCFK 466



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 196/368 (53%), Gaps = 13/368 (3%)

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRL-----FKELNSDLVERLQCDAFILATVIGACAD 184
           PR+  I       C  R+  +R A +         L S   + ++    +LA+++  C D
Sbjct: 6   PRKRPI-------CVARSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGD 58

Query: 185 LAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
             +L+ GK IH H+ + G    +++L + L+ +Y KCG    A +V + M   + +  + 
Sbjct: 59  TKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNN 118

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           ++SG+   G +  AR VFD   +   V WN+M+ GY  +    EAL  F ++RR+G+  +
Sbjct: 119 MVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFN 178

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             + A +L+AC     L+  +Q HG     G + +V+++ +++D Y+K G    A + F 
Sbjct: 179 EFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFD 238

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           E+ V D  +  T+I+ Y+  G +E A  +FR MP K+ +SW ++I G  + GS   ALDL
Sbjct: 239 EMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDL 298

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M  + ++ ++F+ +S + A A+I+SL  G+Q+   +    +  + I+++SL+D Y K
Sbjct: 299 FRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSK 358

Query: 484 CGFIKMDE 491
            G ++  E
Sbjct: 359 SGSLEASE 366


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  231 bits (589), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 159/567 (28%), Positives = 262/567 (46%), Gaps = 118/567 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y ++LL  C T  S+  G Q+H H  K G L+    I N L+ +Y +C     A  
Sbjct: 55  TSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSG-LSDDPSIRNHLINLYSKCRXFGYARK 112

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWN----------- 107
           L DE    +  SW+A+I G+ + G    +L  F+ M     + N+F+++           
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 108 ----------MLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                     +++SGF              AK  E   ++ LF+++P RN ++WN++  C
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           YV+  F  EAV LF E+   ++  ++ + F L++++ AC  L     GK IH +++  G 
Sbjct: 233 YVQXDFCGEAVGLFYEM---VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG---------------- 247
           D+D    ++LV++Y K GD   A  V   +K+PD    +A+I+G                
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 248 ---------------------------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                      Y+ C  + DAR  F+   +   + WN++ISGY 
Sbjct: 350 MKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS 409

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
              ED EAL LF +M + G+  + +TL+++L + + L  +   +QVHG + K G   D+ 
Sbjct: 410 QYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIY 469

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V ++L+D+Y K     DA ++F E  + D +   +MIT Y+  G+ E             
Sbjct: 470 VVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGE------------- 516

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
                             EAL LF  M  ++L+ D+F  +S+++ACAN+S+ E G+Q+  
Sbjct: 517 ------------------EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHV 558

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +   G   D     SLV+ Y KCG I
Sbjct: 559 HILKYGFVLDIFAGNSLVNMYAKCGSI 585



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 201/425 (47%), Gaps = 77/425 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N LI+ ++K      AR L ++    + ++W+++I  Y +NG    A+  F E++   + 
Sbjct: 95  NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH---LL 151

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++C+ F  ++V+ AC+ +  L  GKQ+H  ++V+G                        
Sbjct: 152 GVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGF----------------------- 188

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                   E D F  + L+  YA C +  D++R+FD   + + V WN++ S Y+  +   
Sbjct: 189 --------EGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCG 240

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EA+ LF++M  +G+  +  +L+S+++AC+ L     GK +HG+  K+G   D   A+AL+
Sbjct: 241 EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALV 300

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMIT---------------------------- 378
           D Y+K G  +DA  +F ++K  D +  N +I                             
Sbjct: 301 DMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMK 360

Query: 379 ---------------VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                          +YS C  +EDA+  F  +P K LI+WN++I G SQ    +EAL L
Sbjct: 361 MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSL 420

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M+K  +  ++ +L++++ + A +  + +  QV       G  SD  +  SL+D Y K
Sbjct: 421 FVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGK 480

Query: 484 CGFIK 488
           C  ++
Sbjct: 481 CSHVE 485



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 211/451 (46%), Gaps = 78/451 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C        GK +H + +K G        AN L+ MY + G+  DA+ +F+++
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS-ANALVDMYAKVGDLADAISVFEKI 319

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------KNDFSWNMLISG-----FAK 115
            + +  SWNA+I G +   H E++L+L   M +       K D   ++ +S      ++K
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSK 379

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
              L+ AR  FN +P ++ IAWN++I  Y +     EA+ LF E++    E +  +   L
Sbjct: 380 CDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK---EGIGFNQTTL 436

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +T++ + A L  +   +Q+H   + +G   D  + +SL++ YGK                
Sbjct: 437 STILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGK---------------- 480

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                          C  + DA R+F+  T    V + SMI+ Y    +  EAL LF +M
Sbjct: 481 ---------------CSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 525

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +   +  D    +S+L+AC++L   E GKQ+H H  K G + D+   ++L++ Y+K G  
Sbjct: 526 QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSI 585

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
            DA + FSEL                                 + ++SW++MI GL+Q+G
Sbjct: 586 DDAGRAFSELT-------------------------------ERGIVSWSAMIGGLAQHG 614

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
              +AL LF  M K  +  +  +L SV+ AC
Sbjct: 615 HGRQALQLFNQMLKEGVSPNHITLVSVLGAC 645



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 31/202 (15%)

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
           +ED +   + + + +      + + + +LS C +   L  G Q+H H  K G+ DD    
Sbjct: 35  SEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDD---- 90

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
                       PS               + N +I +YS C     A+ +        L+
Sbjct: 91  ------------PS---------------IRNHLINLYSKCRXFGYARKLVDESSEPDLV 123

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW+++I G +QNG    AL  F  M+ L ++ ++F+ +SV+ AC+ +  L +G+QV   V
Sbjct: 124 SWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVV 183

Query: 463 TIIGLDSDQIISTSLVDFYCKC 484
            + G + D  ++ +LV  Y KC
Sbjct: 184 VVSGFEGDVFVANTLVVMYAKC 205


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/430 (31%), Positives = 225/430 (52%), Gaps = 43/430 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N +I+ + K G  E   QLF+ MPQ+N F+WN +++G  K G L  A +LF  MP R
Sbjct: 56  FIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPER 115

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +   WNSM+  + ++    EA+  F  ++    E    + +  A+ + AC+ L  +  G 
Sbjct: 116 DQCTWNSMVSGFAQHDRCEEALYYFAMMHK---EGFVLNEYTFASGLSACSGLNDMNRGV 172

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIHS I  +    D  +GS+LV++                               Y+ CG
Sbjct: 173 QIHSLIAKSPCLSDVYIGSALVDM-------------------------------YSKCG 201

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +NDA++VFD   D + V WNS+I+ Y  N    EAL +F  M  + V  D  TLASV+S
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 313 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           AC+SL  ++ G++VH    K+  + +D+I+++A +D Y+K     +A  +F  + + + I
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              +M++ Y+     + A+ +F  M  ++++SWN++I G +QNG   EAL LFC + +  
Sbjct: 322 AETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCKCG 485
           +    ++ A+++ ACA+++ L LG Q    V   G       + D  +  SL+D Y KCG
Sbjct: 382 VCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 486 FIKMDEYYLM 495
            +  +E YL+
Sbjct: 442 CV--EEGYLV 449



 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 158/561 (28%), Positives = 263/561 (46%), Gaps = 116/561 (20%)

Query: 8   LARLLQSCNTHH--SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            A+LL SC      +I V + +H   +K G  N    I NRL+  Y +CG+  D   LFD
Sbjct: 22  FAKLLDSCIKLKLSAIDV-RCVHASVIKSGFSNEVF-IQNRLIDAYAKCGSLEDGRQLFD 79

Query: 66  EMPRRNCFSWNA-------------------------------MIEGFMKLGHKEKSLQL 94
           +MP+RN F+WN+                               M+ GF +    E++L  
Sbjct: 80  KMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYY 139

Query: 95  FNVMPQK----NDFSW-----------------------------------NMLISGFAK 115
           F +M ++    N++++                                   + L+  ++K
Sbjct: 140 FAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSK 199

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
            G +  A+ +F++M  RN ++WNS+I CY +NG A EA+++F+ +    VE    D   L
Sbjct: 200 CGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEP---DEVTL 256

Query: 176 ATVIGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           A+VI ACA L+A++ G+++H+ ++ ++ L  D +L ++ V++Y KC     A  + + M 
Sbjct: 257 ASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
             +    ++++SGYA       AR +F +  + + V WN++I+GY  N E+ EAL LF  
Sbjct: 317 IRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCL 376

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI------DDVIVASALLDT 348
           ++R  V     T A++L AC+ L  L  G Q H H  K G        DD+ V ++L+D 
Sbjct: 377 LKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDM 436

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K                               CG +E+   +FR M  +  +SWN+MI
Sbjct: 437 YVK-------------------------------CGCVEEGYLVFRKMMERDCVSWNAMI 465

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGL 467
           +G +QNG   EAL+LF  M     + D  ++  V+SAC +   +E G   F+ +T   G+
Sbjct: 466 IGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
              +   T +VD   + GF++
Sbjct: 526 APLRDHYTCMVDLLGRAGFLE 546



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 174/339 (51%), Gaps = 37/339 (10%)

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADL--AALEYGKQIHSHILVNGLDFDSVLG 210
           A ++F +L  DL        F  A ++ +C  L  +A++  + +H+ ++ +G   +  + 
Sbjct: 2   ARKIFLKLAGDLSSFTVSSPF--AKLLDSCIKLKLSAIDV-RCVHASVIKSGFSNEVFIQ 58

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + L++ Y KCG      Q+ + M + + F  +++++G    G +++A  +F    +    
Sbjct: 59  NRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WNSM+SG+  ++   EAL  F  M + G + +  T AS LSACS L  +  G Q+H   
Sbjct: 119 TWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLI 178

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K   + DV + SAL+D YSK G  +DA ++F E+   + +  N++IT Y          
Sbjct: 179 AKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCY---------- 228

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                                 QNG  +EAL +F  M +  +  D+ +LASVISACA++S
Sbjct: 229 ---------------------EQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLS 267

Query: 451 SLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIK 488
           ++++G++V ARV  +  L +D I+S + VD Y KC  IK
Sbjct: 268 AIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIK 306



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 166/380 (43%), Gaps = 75/380 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C +  +I VG+++H   +K   L + + ++N  + MY +C    +A  +FD M
Sbjct: 256 LASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P RN  +  +M+ G+      + +  +F  M ++N  SWN LI+G+ + GE + A +LF 
Sbjct: 316 PIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF- 374

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-FILATVIGACADLA 186
                          C ++    RE+V               C   +  A ++ ACADLA
Sbjct: 375 ---------------CLLK----RESV---------------CPTHYTFANILKACADLA 400

Query: 187 ALEYGKQIHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            L  G Q H H+L +G  F S       +G+SL+++Y KCG       V   M E D   
Sbjct: 401 DLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVS 460

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +A+I G+A  G  N                               EAL LF +M  +G 
Sbjct: 461 WNAMIIGFAQNGYGN-------------------------------EALELFREMLDSGE 489

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDAC 359
             D  T+  VLSAC   GF+E G+       +  GV       + ++D   + G   +A 
Sbjct: 490 KPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAK 549

Query: 360 KLFSELKVY-DTILLNTMIT 378
            +  E+ V  D+++  +++ 
Sbjct: 550 SIIEEMPVQPDSVIWGSLLA 569


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 214/385 (55%), Gaps = 12/385 (3%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G L+ AR +F+ MP RN  +W  +I  YV  G  +EA+ L++ L     E +Q DAFI +
Sbjct: 6   GRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTE-IQADAFIFS 64

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           +V+ ACA L  LE G +IH  I+  G+  D  L ++LV +Y KCG  + A QV + +   
Sbjct: 65  SVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHR 124

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D    +A++S  A  G +  A +++        + W++MIS       D EAL L+ +M 
Sbjct: 125 DVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMI 184

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
            + V  +ASTLA+VL+AC+ LG L  G  V   A + G+  D +V + L++ Y++ G   
Sbjct: 185 LS-VRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVI 243

Query: 357 DACK-LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
            A + LF  +K    +  N M+T ++   R+++A+ +FR MP+KS+ISWN+MI G  QNG
Sbjct: 244 AAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNG 303

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS----DQ 471
            P +AL+LF  M+   L+  + +  SV+ ACAN+++  LG     R    G+D     D 
Sbjct: 304 RPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLG-----RFICDGMDEALAKDI 358

Query: 472 IISTSLVDFYCKCGFIKMDEYYLMQ 496
            ++ S+ + Y KCG  ++     ++
Sbjct: 359 SVANSICNMYGKCGLPELARQTFLE 383



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 211/420 (50%), Gaps = 40/420 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  + K G  +++ Q+F+ +  ++  SWN ++S  A+AG L+ A  ++ +M   + +
Sbjct: 99  NALVTMYAKCGRIDRAKQVFDRITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVL 158

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W++MI      G  REA+ L++E+    +  ++ +A  LATV+ AC  L  L  G  + 
Sbjct: 159 CWSTMISAEAMAGHDREALELYREM----ILSVRPNASTLATVLAACTRLGDLSSGALVR 214

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGYANCGKM 254
              + +GLD D+V+G++LVNLY + GD  +A +VL + MK+      +A+++ +A   ++
Sbjct: 215 DGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARV 274

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           ++A ++F    D S + WN+MI+G+  N    +AL LF +M   G+     T  SVL AC
Sbjct: 275 DEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDAC 334

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           ++L     G+ +                                C    E    D  + N
Sbjct: 335 ANLTASSLGRFI--------------------------------CDGMDEALAKDISVAN 362

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           ++  +Y  CG  E A+  F  M  + ++SW ++I   SQNG   EALD+F  M +  +  
Sbjct: 363 SICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQAGVEP 422

Query: 435 DKFSLASVISACANISSLELGEQVFARVT---IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +  +L + +SAC++ +  + G  +F+ +      G+ +++      +D   + G++K  E
Sbjct: 423 NGITLINTLSACSHGALFDEGSDIFSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAE 482


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/575 (27%), Positives = 255/575 (44%), Gaps = 125/575 (21%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M+T+  YLA LLQ+C    +   GK +H H L+  + + T  ++NRL++ Y +C     +
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTF-LSNRLIEFYAKCNAIDAS 59

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE-- 118
             LFD+MP+R+ ++WNA++  + K    E +  LF  MP++N  SWN LIS   + G   
Sbjct: 60  RRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACG 119

Query: 119 ---------------------------------------LKTARTLFNDMPRRNAIAWNS 139
                                                  +  A   F D+P  N +++ +
Sbjct: 120 ALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTA 179

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-------- 191
           M+     +    EA RLF+ +   L  R+  D+  L++V+G C+     E+G        
Sbjct: 180 MMGGLADSDQVNEAFRLFRLM---LRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVL 236

Query: 192 ------KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
                 +Q+H   + +G + D  L +SL+++Y K G+ +SA  +   M E      + +I
Sbjct: 237 SSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMI 296

Query: 246 SGYAN-----------------------------------CGKMNDARRVFDRTTDTSSV 270
           +GY                                      G +   R++FD  +  S  
Sbjct: 297 AGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLS 356

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN+++SGY  N    EA+ LF +M+   V  D +TLA +LS+ + +  LE G+QVH  +
Sbjct: 357 SWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVS 416

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K     D+ +AS L+  YSK                               CG++E AK
Sbjct: 417 QKAVFRTDIYLASGLIGMYSK-------------------------------CGKVEMAK 445

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF  +    ++ WNSM+ GLS N    EA   F  M +  +   +FS A+V+S CA +S
Sbjct: 446 RIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLS 505

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SL  G QV +++   G  +D  + ++L+D Y KCG
Sbjct: 506 SLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCG 540



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 212/441 (48%), Gaps = 72/441 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+Q+H   +K G   S L + N LL MY + GN   A ++F  MP  +  SWN MI G+ 
Sbjct: 242 GQQVHCLTIKHG-FESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYG 300

Query: 84  KLGHKEKSLQLFNVMP----QKNDFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
           +     K+++    M     + ++ ++ NML++   K+G+++  R +F+ M   +  +WN
Sbjct: 301 QKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACI-KSGDIEAGRQMFDGMSSPSLSSWN 359

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           +++  Y +N   +EAV+LF+E+       +  D   LA ++ + A +  LE G+Q+H+  
Sbjct: 360 TILSGYSQNENHKEAVKLFREMQ---FRSVHPDRTTLAIILSSLAGMMLLEGGRQVHA-- 414

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
                                     S   V       D +  S LI  Y+ CGK+  A+
Sbjct: 415 -------------------------VSQKAVF----RTDIYLASGLIGMYSKCGKVEMAK 445

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           R+FDR  +   V WNSM++G   N+ D EA   F KMR  G+     + A+VLS C+ L 
Sbjct: 446 RIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLS 505

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G+QVH    + G ++D  V SAL+D YSK                           
Sbjct: 506 SLSQGRQVHSQIAREGYMNDAFVGSALIDMYSK--------------------------- 538

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
               CG ++ A+ +F  M  K+ ++WN MI G +QNG   EA+ L+ +M     + D  +
Sbjct: 539 ----CGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGIT 594

Query: 439 LASVISACANISSLELGEQVF 459
             +V++AC++   ++ G ++F
Sbjct: 595 FVAVLTACSHSGLVDTGIKIF 615



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 195/447 (43%), Gaps = 99/447 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM--- 67
           +L +C     I  G+Q+       G+ + +L   N +L  Y +  N  +A+ LF EM   
Sbjct: 330 MLVACIKSGDIEAGRQMF-----DGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFR 384

Query: 68  ---PRRNCFSWN-AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-----LISGFAKAGE 118
              P R   +   + + G M L   E   Q+  V  QK  F  ++     LI  ++K G+
Sbjct: 385 SVHPDRTTLAIILSSLAGMMLL---EGGRQVHAV-SQKAVFRTDIYLASGLIGMYSKCGK 440

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           ++ A+ +F+ +   + + WNSM+     N   +EA   FK++    +   Q   F  ATV
Sbjct: 441 VEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQ---FSYATV 497

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +  CA L++L  G+Q+HS I   G   D+ +GS+L+++Y KCGD ++A  V +MM     
Sbjct: 498 LSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMM----- 552

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                        GK              ++V WN MI GY  N    EA+LL+  M  +
Sbjct: 553 ------------LGK--------------NTVTWNEMIHGYAQNGCGDEAVLLYEDMIGS 586

Query: 299 GVLEDASTLASVLSACSSLGFLEHG-------KQVHG---------------------HA 330
           G   D  T  +VL+ACS  G ++ G       +Q HG                     H 
Sbjct: 587 GEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHE 646

Query: 331 CKVGVID------DVIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            +V +ID      D I+   LL +   Y+   +   A +    L   ++     +  +YS
Sbjct: 647 AEV-LIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYS 705

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMI 408
           S GR +DAK +      + L+S+N ++
Sbjct: 706 SLGRWDDAKAV------RELMSYNQVV 726


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/429 (32%), Positives = 227/429 (52%), Gaps = 19/429 (4%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP--RRN 133
           N +I+ + K      + +LF+ +PQ +  +   LI+ ++  G LK AR +FN+ P   R+
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRD 111

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-K 192
            + +N+MI  Y        A+ LF+ +        Q D F  A+V+ A   +   E    
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRW---ANFQPDDFTFASVLSASTLIFYDERQCG 168

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGD---------FNSANQVLNMMKEPDDFCLSA 243
           Q+H  ++  G++    + ++L+++Y KC             SA ++ + M + ++F  + 
Sbjct: 169 QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTT 228

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           LI+GY   G +  AR + D  T+   + WN+MISGY+ +    +AL LF KMR  GV  D
Sbjct: 229 LITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVD 288

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD----VIVASALLDTYSKRGMPSDAC 359
            ST  SV+SAC+  GF   GKQVH +  K  +  D    + V + L+  Y K G    A 
Sbjct: 289 ESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGAR 348

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           K+F E+ V D I  NT+++ Y + GR+E+AK  F  MP K+L++W  MI GL+QNG   +
Sbjct: 349 KIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQ 408

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL LF  M       + ++ A  I+AC+ + +LE G Q+ A++  +G DS   +  +++ 
Sbjct: 409 ALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMIT 468

Query: 480 FYCKCGFIK 488
            Y +CG ++
Sbjct: 469 MYARCGIVE 477



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 209/398 (52%), Gaps = 39/398 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF+ MP++N+F W  LI+G+ + G+L  AR + + M  +  IAWN+MI  Y+ +G   +
Sbjct: 213 KLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFED 272

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL----DFDSV 208
           A+ LF+++    +  +Q D     +VI ACAD      GKQ+H++IL N L    DF   
Sbjct: 273 ALTLFRKMR---LLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLS 329

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++L+ LY K G  + A ++   M   D    + L+SGY N G+M +A+  F +  + +
Sbjct: 330 VGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKN 389

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W  MISG   N    +AL LF++M+ +G   +    A  ++ACS LG LE+G+Q+H 
Sbjct: 390 LLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHA 449

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
               +G    + V                                N MIT+Y+ CG +E 
Sbjct: 450 QIVHLGHDSTLSVG-------------------------------NAMITMYARCGIVEA 478

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F TMP    +SWNSMI  L Q+G  ++A++L+  M K  +  D+ +  +V+SAC++
Sbjct: 479 ARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSH 538

Query: 449 ISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCG 485
              +E G + F + +   G+   +     ++D +C+ G
Sbjct: 539 AGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAG 576



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 162/319 (50%), Gaps = 18/319 (5%)

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           +L++    + +H H++ +G      + + L+++Y K  DF  A ++ + + +PD    + 
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 244 LISGYANCGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           LI+ Y+  G +  AR +F+ T      +V +N+MI+GY   N+   A+ LF  MR     
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 302 EDASTLASVLSACSSLGFLEHGK--QVHGHACKVGVIDDVIVASALLDTYSK-------- 351
            D  T ASVLSA S+L F +  +  Q+HG   K G+     V +ALL  Y K        
Sbjct: 145 PDDFTFASVLSA-STLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVS 203

Query: 352 -RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
              + + A KLF E+   +  +  T+IT Y   G +  A+ I  TM  +  I+WN+MI G
Sbjct: 204 SSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISG 263

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
              +G   +AL LF  M  L +++D+ +  SVISACA+     LG+QV A +    L+ D
Sbjct: 264 YLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPD 323

Query: 471 Q----IISTSLVDFYCKCG 485
           +     +  +L+  Y K G
Sbjct: 324 RDFLLSVGNTLITLYWKYG 342



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 172/398 (43%), Gaps = 99/398 (24%)

Query: 23  VGKQLHLHFLKKGI---LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +GKQ+H + LK  +    +  L + N L+ +Y + G    A  +F EMP ++  +WN ++
Sbjct: 307 LGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLL 366

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            G++  G  E++   F  MP+KN  +W ++ISG A+                        
Sbjct: 367 SGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQ------------------------ 402

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
                  NGF  +A++LF ++  D  E    + +  A  I AC+ L ALE G+Q+H+ I+
Sbjct: 403 -------NGFGEQALKLFNQMKLDGYE---PNDYAFAGAITACSVLGALENGRQLHAQIV 452

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             G D    +G++++ +Y +CG   +                               AR 
Sbjct: 453 HLGHDSTLSVGNAMITMYARCGIVEA-------------------------------ART 481

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F        V WNSMI+    +    +A+ L+ +M + G+L D  T  +VLSACS  G 
Sbjct: 482 MFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGL 541

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           +E G +         ++++  +A    D Y++                        MI +
Sbjct: 542 VEEGNRYFN-----SMLENYGIAPG-EDHYAR------------------------MIDL 571

Query: 380 YSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGS 416
           +   G+  DAK++  +MP ++    W +++ G   +G+
Sbjct: 572 FCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGN 609


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/520 (27%), Positives = 256/520 (49%), Gaps = 74/520 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  L+ C    S   GKQ+H   +  G    T  + N L+ MY +C +    L +FDEM
Sbjct: 279 FASALRVCGALRSRDGGKQVHSKLIACGFKGDTF-VGNALIDMYAKCDDEESCLKVFDEM 337

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             RN  +WN++I    + GH   +L LF  M +     N F+                  
Sbjct: 338 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGR 397

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + L+  ++K G ++ A  +F  +  RN +++N+++  YV+ G
Sbjct: 398 ELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEG 457

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A EA+ L+ ++ S+  + +Q D F   T++  CA+      G+QIH+H++         
Sbjct: 458 KAEEALELYHDMQSE--DGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI--------- 506

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                            AN   N++ E +      L+  Y+ CG++N A+ +F+R  + +
Sbjct: 507 ----------------RANITKNIIVETE------LVHMYSECGRLNYAKEIFNRMAERN 544

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +  WNSMI GY  N E  EAL LF +M+ NG+  D  +L+S+LS+C SL   + G+++H 
Sbjct: 545 AYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN 604

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              +  + ++ I+   L+D Y+K G    A K++ +    D IL N M++ + + GR  D
Sbjct: 605 FIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAND 664

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK++F  M  ++   WNS++ G +  G   E+ + F  M + D+  D  ++ ++++ C++
Sbjct: 665 AKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSS 724

Query: 449 ISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGFI 487
           + +LE G+Q+ + +   G ++   ++ T+LVD Y KCG I
Sbjct: 725 LPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAI 764



 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 252/481 (52%), Gaps = 76/481 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  G++LH H ++  +LNS + + + L+ MY +CG   +A  +F  +  RN  S+NA++ 
Sbjct: 393 IGKGRELHGHLVRN-LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 81  GFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLIS------------------------ 111
           G+++ G  E++L+L++ M      Q + F++  L++                        
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511

Query: 112 -----------GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                       +++ G L  A+ +FN M  RNA +WNSMI  Y +NG  +EA+RLFK++
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
               +  ++ D F L++++ +C  L+  + G+++H+ I+ N ++ + +L   LV++Y KC
Sbjct: 572 Q---LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKC 628

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G  + A +V +   + D    + ++S + N G+ NDA+ +FD+    ++ +WNS+++GY 
Sbjct: 629 GSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYA 688

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DV 339
           +     E+   F +M  + +  D  T+ ++++ CSSL  LEHG Q+H    K G ++  V
Sbjct: 689 NKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSV 748

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           ++ +AL+D YSK                               CG I  A+ +F  M  K
Sbjct: 749 VLETALVDMYSK-------------------------------CGAITKARTVFDNMNGK 777

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +++SWN+MI G S++G   EAL L+  M K  +  ++ +  +++SAC++   +E G ++F
Sbjct: 778 NIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIF 837

Query: 460 A 460
            
Sbjct: 838 T 838



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 225/518 (43%), Gaps = 109/518 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD---ALLLFDEM 67
           L+Q C   +S   GK +H   +  G  N    +  ++L +Y R G   D   A  LF+EM
Sbjct: 77  LIQDCIDSNSFQRGKSIHTQMISNG-YNPDAYLMTKILMLYARSGCLDDLCYARKLFEEM 135

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS---------------------- 105
           P RN  +WN MI  + ++    + L+L+  M    +FS                      
Sbjct: 136 PERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVR 195

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               L+ G+A+ G +  A T  +++   + + WN++I  YV+  
Sbjct: 196 QLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKIL 255

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA  +F  +   L   +  D F  A+ +  C  L + + GKQ+HS ++  G   D+ 
Sbjct: 256 SWEEAWGIFDRM---LKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTF 312

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++L+++                               YA C       +VFD   + +
Sbjct: 313 VGNALIDM-------------------------------YAKCDDEESCLKVFDEMGERN 341

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNS+IS         +AL+LF +M+ +G   +   L S+L A + L  +  G+++HG
Sbjct: 342 QVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHG 401

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  +  +  D+I+ SAL+D YSK GM                               +E+
Sbjct: 402 HLVRNLLNSDIILGSALVDMYSKCGM-------------------------------VEE 430

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACA 447
           A  +FR++  ++ +S+N+++ G  Q G   EAL+L+ +M   D ++ D+F+  ++++ CA
Sbjct: 431 AHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           N  +   G Q+ A +    +  + I+ T LV  Y +CG
Sbjct: 491 NQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECG 528



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 190/470 (40%), Gaps = 137/470 (29%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    + + G+Q+H H ++  I  + + +   L+ MY  CG    A  +F+ M  R
Sbjct: 485 LLTLCANQRNDNQGRQIHAHLIRANITKNII-VETELVHMYSECGRLNYAKEIFNRMAER 543

Query: 71  NCFSWNAMIEGFMKLGHKE------KSLQLFNVMP------------------QKN---- 102
           N +SWN+MIEG+ + G  +      K +QL  + P                  QK     
Sbjct: 544 NAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELH 603

Query: 103 ----------------------------DFSW--------------NMLISGFAKAGELK 120
                                       D++W              N+++S F  +G   
Sbjct: 604 NFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAN 663

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            A+ LF+ M +RN   WNS++  Y   G  +E+   F E+   L   ++ D   + T++ 
Sbjct: 664 DAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEM---LESDIEYDVLTMVTIVN 720

Query: 181 ACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            C+ L ALE+G Q+HS I+  G ++   VL ++LV++Y K                    
Sbjct: 721 LCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSK-------------------- 760

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                      CG +  AR VFD     + V WN+MISGY  +    EAL+L+ +M + G
Sbjct: 761 -----------CGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKG 809

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  +  T  ++LSACS  G +E G ++                +++ + Y+         
Sbjct: 810 MYPNEVTFLAILSACSHTGLVEEGLRIF---------------TSMQEDYNIEAKAEH-- 852

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMI 408
                           M+ +    GR+EDAK     MP +  +S W +++
Sbjct: 853 -------------YTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALL 889



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 168/379 (44%), Gaps = 68/379 (17%)

Query: 113 FAKAG---ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +A++G   +L  AR LF +MP RN  AWN+MI  Y R     E +RL+  +         
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGS---GNF 172

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D F   +VI AC  +  +   +Q+ S ++  GL+ +  +G                   
Sbjct: 173 SDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGG------------------ 214

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                        AL+ GYA  G M+DA    D    TS V WN++I+GY+      EA 
Sbjct: 215 -------------ALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAW 261

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            +F +M + GV  D  T AS L  C +L   + GKQVH      G   D  V +AL+D  
Sbjct: 262 GIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALID-- 319

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
                                        +Y+ C   E    +F  M  ++ ++WNS+I 
Sbjct: 320 -----------------------------MYAKCDDEESCLKVFDEMGERNQVTWNSIIS 350

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
             +Q G   +AL LF  M +   + ++F+L S++ A A ++ +  G ++   +    L+S
Sbjct: 351 AEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNS 410

Query: 470 DQIISTSLVDFYCKCGFIK 488
           D I+ ++LVD Y KCG ++
Sbjct: 411 DIILGSALVDMYSKCGMVE 429



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 20/247 (8%)

Query: 1   MDTRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN 56
           +++ I+Y    +  ++  C++  ++  G QLH   +KKG +N ++ +   L+ MY +CG 
Sbjct: 704 LESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGA 763

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG 112
            T A  +FD M  +N  SWNAMI G+ K G  +++L L+  MP+K    N+ ++  ++S 
Sbjct: 764 ITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSA 823

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            +  G ++    +F  M     I   +  +  + +   R A RL  E   + VE++  + 
Sbjct: 824 CSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGR-AGRL--EDAKEFVEKMPIEP 880

Query: 173 FI--LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSAN 227
            +     ++GAC     ++ G+     +     + D       V   N+Y   G +    
Sbjct: 881 EVSTWGALLGACRVHKDMDMGRLAAQRL----FELDPQNPGPYVIMSNIYAAAGRWKEVE 936

Query: 228 QVLNMMK 234
            +  MMK
Sbjct: 937 DIRQMMK 943


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 234/494 (47%), Gaps = 72/494 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+    ++ G+Q+H    K G    +      L+ MY +C    DA L+FD  
Sbjct: 145 FAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSF-CQGGLIDMYAKCRYLRDARLVFDGA 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              +  SW A+I G+++ G   +++++F+ M +     +  +   +++ +   G L  AR
Sbjct: 204 LNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADAR 263

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF  +P  N +AWN MI  + + GFA EA+  F EL    ++  +     L +V+ A A
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSS---LGSVLSAIA 320

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L+ L YG  +H+     GLD +  +GS+LVN+Y KC   ++A QV N + E        
Sbjct: 321 SLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE-------- 372

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                         R +         V+WN+M+ G+  N    E +  F  M+R+G   D
Sbjct: 373 --------------RNI---------VLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  S+ SAC+SL +L  G Q+H    K     ++ VA+AL+D Y+K G   +A K F 
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +K++D +                               SWN++IVG  Q     EA  +
Sbjct: 470 LMKIHDNV-------------------------------SWNAIIVGYVQEEYNDEAFFM 498

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M    +  D+ SLAS++SACAN+  L+ G+Q    +  +GLD+     +SL+D Y K
Sbjct: 499 FRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558

Query: 484 CGFI--KMDEYYLM 495
           CG +    D +Y M
Sbjct: 559 CGVVLAARDVFYSM 572



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 198/417 (47%), Gaps = 69/417 (16%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N+++  + K G +  A+  F+ + +++  AWNS++  Y+ +G     V+ F  + +    
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWN---H 136

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC------ 220
            ++ + F  A V+ AC+ L  + +G+Q+H  +   G  F S     L+++Y KC      
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196

Query: 221 -----GDFN--------------------SANQVLNMMKE----PDDFCLSALISGYANC 251
                G  N                     A +V + M+     PD   L  +++ Y   
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVAL 256

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G++ DAR++F +  + + V WN MISG+       EA+  F ++++ G+    S+L SVL
Sbjct: 257 GRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVL 316

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           SA +SL  L +G  VH  A K G+ D+V V SAL++ Y+K                    
Sbjct: 317 SAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAK-------------------- 356

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      C +++ AK +F ++  ++++ WN+M+ G +QNG   E ++ F  M +  
Sbjct: 357 -----------CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHG 405

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            + D+F+  S+ SACA++  L  G Q+   +      S+  ++ +LVD Y K G +K
Sbjct: 406 PQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALK 462



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/552 (24%), Positives = 234/552 (42%), Gaps = 144/552 (26%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----- 101
           ++  Y+  G   DA  LF ++P  N  +WN MI G  K G  E+++  F  + +      
Sbjct: 249 VVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKAT 308

Query: 102 ----------------------------------NDFSWNMLISGFAKAGELKTARTLFN 127
                                             N +  + L++ +AK  ++  A+ +FN
Sbjct: 309 RSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFN 368

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  RN + WN+M+  + +NG A+E +  F  +        Q D F   ++  ACA L  
Sbjct: 369 SLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKR---HGPQPDEFTFTSIFSACASLHY 425

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L +G Q+H+ ++ N   F S L                             F  +AL+  
Sbjct: 426 LNFGGQLHTVMIKN--KFASNL-----------------------------FVANALVDM 454

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA  G + +AR+ F+      +V WN++I GY+    + EA  +F +M  NGVL D  +L
Sbjct: 455 YAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSL 514

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MPS 356
           AS++SAC+++  L+ G+Q H    KVG+       S+L+D Y K G           MPS
Sbjct: 515 ASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPS 574

Query: 357 -------------------DACKLFSELKVYD-----------------TILLN------ 374
                              +A  LF E+++                     +LN      
Sbjct: 575 RNVVSVNALIAGYTMGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIH 634

Query: 375 -----------------TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGS 416
                            +++ +Y +  R  D++ +F  +   K L+ W ++I G +Q   
Sbjct: 635 GQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNH 694

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             +AL  + +M   ++  D+ + ASV+ ACA +SSL+ G+++ + +   G + D++  +S
Sbjct: 695 HEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSS 754

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG +K
Sbjct: 755 LIDMYAKCGDVK 766



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 214/490 (43%), Gaps = 107/490 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +  +C + H ++ G QLH   +K     S L +AN L+ MY + G   +A   F+ M   
Sbjct: 416 IFSACASLHYLNFGGQLHTVMIKNK-FASNLFVANALVDMYAKSGALKEARKQFELMKIH 474

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS------------------- 105
           +  SWNA+I G+++  + +++  +F       V+P +   +                   
Sbjct: 475 DNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCH 534

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + LI  + K G +  AR +F  MP RN ++ N++I  Y   G   
Sbjct: 535 CLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLE 593

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+E+    +  L+      A ++  C     L  G+QIH  ++            
Sbjct: 594 EAIHLFQEIQ---MVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVM------------ 638

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-V 270
                  K G  +S+  V          C+S L+  Y N  +  D+  +F         V
Sbjct: 639 -------KWGFLSSSEMV----------CVS-LLCLYMNSQRFVDSETLFSELQYPKGLV 680

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +W ++ISGY   N   +AL  +  MR + +L D +  ASVL AC+ +  L++G+++H   
Sbjct: 681 VWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLI 740

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G   D +  S+L+D Y+K                               CG ++ + 
Sbjct: 741 FHTGFNMDEVTCSSLIDMYAK-------------------------------CGDVKGSL 769

Query: 391 HIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +FR MP + ++ISWNSMIVGL++NG   EAL++F  M +  +  D+ +   V+SAC++ 
Sbjct: 770 QVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829

Query: 450 SSLELGEQVF 459
             +  G +VF
Sbjct: 830 GRVSEGRKVF 839



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 162/341 (47%), Gaps = 68/341 (19%)

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L AL   K IHS  L  G+    +LG+ +V+LY KCG+ + A +  + +++ D F  +++
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +S Y + G       +F     +   MWN                   H++R N      
Sbjct: 114 LSMYLDHG-------LFATVVQSFVCMWN-------------------HEVRPNEF---- 143

Query: 305 STLASVLSACSSLGFLEHGKQVHGHA----------CKVGVID----------------- 337
            T A VLSACS L  +  G+QVH             C+ G+ID                 
Sbjct: 144 -TFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDG 202

Query: 338 ----DVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDA 389
               D +  +AL+  Y + G P +A K+F  ++      D I L T++  Y + GR+ DA
Sbjct: 203 ALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADA 262

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  +PN ++++WN MI G ++ G   EA+  F  + K  L+  + SL SV+SA A++
Sbjct: 263 RKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASL 322

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           S L  G  V A+ T  GLD +  + ++LV+ Y KC   KMD
Sbjct: 323 SMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCS--KMD 361


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 146/494 (29%), Positives = 234/494 (47%), Gaps = 72/494 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+    ++ G+Q+H    K G    +      L+ MY +C    DA L+FD  
Sbjct: 145 FAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSF-CQGGLIDMYAKCRYLRDARLVFDGA 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              +  SW A+I G+++ G   +++++F+ M +     +  +   +++ +   G L  AR
Sbjct: 204 LNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADAR 263

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF  +P  N +AWN MI  + + GFA EA+  F EL    ++  +     L +V+ A A
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSS---LGSVLSAIA 320

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L+ L YG  +H+     GLD +  +GS+LVN+Y KC   ++A QV N + E        
Sbjct: 321 SLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE-------- 372

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                         R +         V+WN+M+ G+  N    E +  F  M+R+G   D
Sbjct: 373 --------------RNI---------VLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  S+ SAC+SL +L  G Q+H    K     ++ VA+AL+D Y+K G   +A K F 
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +K++D +                               SWN++IVG  Q     EA  +
Sbjct: 470 LMKIHDNV-------------------------------SWNAIIVGYVQEEYNDEAFFM 498

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M    +  D+ SLAS++SACAN+  L+ G+Q    +  +GLD+     +SL+D Y K
Sbjct: 499 FRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558

Query: 484 CGFI--KMDEYYLM 495
           CG +    D +Y M
Sbjct: 559 CGVVLAARDVFYSM 572



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 198/417 (47%), Gaps = 69/417 (16%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N+++  + K G +  A+  F+ + +++  AWNS++  Y+ +G     V+ F  + +    
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWN---H 136

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC------ 220
            ++ + F  A V+ AC+ L  + +G+Q+H  +   G  F S     L+++Y KC      
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196

Query: 221 -----GDFN--------------------SANQVLNMMKE----PDDFCLSALISGYANC 251
                G  N                     A +V + M+     PD   L  +++ Y   
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVAL 256

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G++ DAR++F +  + + V WN MISG+       EA+  F ++++ G+    S+L SVL
Sbjct: 257 GRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVL 316

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           SA +SL  L +G  VH  A K G+ D+V V SAL++ Y+K                    
Sbjct: 317 SAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAK-------------------- 356

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      C +++ AK +F ++  ++++ WN+M+ G +QNG   E ++ F  M +  
Sbjct: 357 -----------CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHG 405

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            + D+F+  S+ SACA++  L  G Q+   +      S+  ++ +LVD Y K G +K
Sbjct: 406 PQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALK 462



 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 135/552 (24%), Positives = 234/552 (42%), Gaps = 144/552 (26%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----- 101
           ++  Y+  G   DA  LF ++P  N  +WN MI G  K G  E+++  F  + +      
Sbjct: 249 VVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKAT 308

Query: 102 ----------------------------------NDFSWNMLISGFAKAGELKTARTLFN 127
                                             N +  + L++ +AK  ++  A+ +FN
Sbjct: 309 RSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFN 368

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  RN + WN+M+  + +NG A+E +  F  +        Q D F   ++  ACA L  
Sbjct: 369 SLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKR---HGPQPDEFTFTSIFSACASLHY 425

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L +G Q+H+ ++ N   F S L                             F  +AL+  
Sbjct: 426 LNFGGQLHTVMIKN--KFASNL-----------------------------FVANALVDM 454

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA  G + +AR+ F+      +V WN++I GY+    + EA  +F +M  NGVL D  +L
Sbjct: 455 YAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSL 514

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MPS 356
           AS++SAC+++  L+ G+Q H    KVG+       S+L+D Y K G           MPS
Sbjct: 515 ASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPS 574

Query: 357 -------------------DACKLFSELKVYD-----------------TILLN------ 374
                              +A  LF E+++                     +LN      
Sbjct: 575 RNVVSVNALIAGYTMGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIH 634

Query: 375 -----------------TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGS 416
                            +++ +Y +  R  D++ +F  +   K L+ W ++I G +Q   
Sbjct: 635 GQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNH 694

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             +AL  + +M   ++  D+ + ASV+ ACA +SSL+ G+++ + +   G + D++  +S
Sbjct: 695 HEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSS 754

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG +K
Sbjct: 755 LIDMYAKCGDVK 766



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 214/490 (43%), Gaps = 107/490 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +  +C + H ++ G QLH   +K     S L +AN L+ MY + G   +A   F+ M   
Sbjct: 416 IFSACASLHYLNFGGQLHTVMIKNK-FASNLFVANALVDMYAKSGALKEARKQFELMKIH 474

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS------------------- 105
           +  SWNA+I G+++  + +++  +F       V+P +   +                   
Sbjct: 475 DNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCH 534

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + LI  + K G +  AR +F  MP RN ++ N++I  Y   G   
Sbjct: 535 CLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLE 593

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+E+    +  L+      A ++  C     L  G+QIH  ++            
Sbjct: 594 EAIHLFQEIQ---MVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVM------------ 638

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-V 270
                  K G  +S+  V          C+S L+  Y N  +  D+  +F         V
Sbjct: 639 -------KWGFLSSSEMV----------CVS-LLCLYMNSQRFVDSETLFSELQYPKGLV 680

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +W ++ISGY   N   +AL  +  MR + +L D +  ASVL AC+ +  L++G+++H   
Sbjct: 681 VWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLI 740

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G   D +  S+L+D Y+K                               CG ++ + 
Sbjct: 741 FHTGFNMDEVTCSSLIDMYAK-------------------------------CGDVKGSL 769

Query: 391 HIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +FR MP + ++ISWNSMIVGL++NG   EAL++F  M +  +  D+ +   V+SAC++ 
Sbjct: 770 QVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829

Query: 450 SSLELGEQVF 459
             +  G +VF
Sbjct: 830 GRVSEGRKVF 839



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 162/341 (47%), Gaps = 68/341 (19%)

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L AL   K IHS  L  G+    +LG+ +V+LY KCG+ + A +  + +++ D F  +++
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +S Y + G       +F     +   MWN                   H++R N      
Sbjct: 114 LSMYLDHG-------LFATVVQSFVCMWN-------------------HEVRPNEF---- 143

Query: 305 STLASVLSACSSLGFLEHGKQVHGHA----------CKVGVID----------------- 337
            T A VLSACS L  +  G+QVH             C+ G+ID                 
Sbjct: 144 -TFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDG 202

Query: 338 ----DVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDA 389
               D +  +AL+  Y + G P +A K+F  ++      D I L T++  Y + GR+ DA
Sbjct: 203 ALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADA 262

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  +PN ++++WN MI G ++ G   EA+  F  + K  L+  + SL SV+SA A++
Sbjct: 263 RKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASL 322

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           S L  G  V A+ T  GLD +  + ++LV+ Y KC   KMD
Sbjct: 323 SMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCS--KMD 361


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 246/485 (50%), Gaps = 70/485 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C+   ++  G+Q+H   LK G  +S    A  L+ MY +CG   DA  +FD +
Sbjct: 160 IAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAG-LVDMYAKCGEVDDARRMFDGI 218

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              +   W +MI G+ ++G  +++L LF+ M +     +  +   +IS  A  G L  AR
Sbjct: 219 ACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDAR 278

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           TL   +   + +AWN++I  Y ++G   E   L+K++     + L       A+++ A A
Sbjct: 279 TLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKK---QGLMPTRSTFASILSAAA 335

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           ++ A + G+QIH+  + +GLD +  +GSSL+NLY K G                  C+S 
Sbjct: 336 NMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHG------------------CIS- 376

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                       DA++VFD +T+ + VMWN+++ G++ N    E + +F  MRR  +  D
Sbjct: 377 ------------DAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEAD 424

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  SVL AC +L  L+ G+QVH    K G+  D+ VA+A+LD                
Sbjct: 425 DFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLD---------------- 468

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                          +YS  G I+ AK +F  +P K  +SWN++IVGL+ N    EA+++
Sbjct: 469 ---------------MYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINM 513

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
              M    + +D+ S A+ I+AC+NI ++E G+Q+ +      + S+  + +SL+D Y K
Sbjct: 514 LKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSK 573

Query: 484 CGFIK 488
            G ++
Sbjct: 574 FGDVE 578



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/525 (24%), Positives = 243/525 (46%), Gaps = 106/525 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M TR  + A +L +     +   G+Q+H   +K G L++ + + + L+ +Y++ G  +DA
Sbjct: 321 MPTRSTF-ASILSAAANMTAFDEGRQIHATAVKHG-LDANVFVGSSLINLYVKHGCISDA 378

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW---------- 106
             +FD    +N   WNA++ GF++   +E+++Q+F  M     + +DF++          
Sbjct: 379 KKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINL 438

Query: 107 -------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                    N ++  ++K G +  A+ LF+ +P +++++WN++I
Sbjct: 439 YSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALI 498

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
                N    EA+ + K +       +  D    AT I AC+++ A+E GKQIHS  +  
Sbjct: 499 VGLAHNEEEGEAINMLKRMK---FYGIALDEVSFATAINACSNIWAIETGKQIHSASIKY 555

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
            +  +  +GSSL++LY K GD  S+                               R+V 
Sbjct: 556 NVCSNHAVGSSLIDLYSKFGDVESS-------------------------------RKVL 584

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                +S V  N++I+G + NN + EA+ LF ++ ++G      T  S+LS C+      
Sbjct: 585 AHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSV 644

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GKQVH +  K  +++                               DT L  +++ +Y 
Sbjct: 645 IGKQVHCYTLKSAILNQ------------------------------DTSLGISLVGIYL 674

Query: 382 SCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
            C  +EDA  +   +P+ K+L+ W + I G +QNG  +++L +F  M   D+R D+ +  
Sbjct: 675 KCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFT 734

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SV+ AC+ +++L  G+++   +   G  S +  +++L+D Y KCG
Sbjct: 735 SVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCG 779



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 188/389 (48%), Gaps = 80/389 (20%)

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQC------DAFILATVIGACADLAALEYGKQ 193
           ++ C+ R+G  R+ +        D  +R++C      D F +A V+ AC+ L ALE+G+Q
Sbjct: 127 VLSCHARSGSPRDVL--------DAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQ 178

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY----- 248
           +H  +L +G        + LV++Y KCG+ + A ++ + +  PD  C +++I+GY     
Sbjct: 179 VHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGR 238

Query: 249 ------------------------------ANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                                         A+ G++ DAR +  R   TS+V WN++I+ 
Sbjct: 239 YQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIAS 298

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y  +  D+E   L+  M++ G++   ST AS+LSA +++   + G+Q+H  A K G+  +
Sbjct: 299 YSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDAN 358

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           V V S+L++ Y K G                                I DAK +F     
Sbjct: 359 VFVGSSLINLYVKHGC-------------------------------ISDAKKVFDFSTE 387

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           K+++ WN+++ G  QN    E + +F  M + DL  D F+  SV+ AC N+ SL+LG QV
Sbjct: 388 KNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQV 447

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                  G+D+D  ++ +++D Y K G I
Sbjct: 448 HCITIKNGMDADLFVANAMLDMYSKLGAI 476



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/470 (23%), Positives = 216/470 (45%), Gaps = 81/470 (17%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM------PRRNCFSWNAMIEGFMK 84
            LK+  + ST+   N ++  Y + G  ++   L+ +M      P R+ F+  +++     
Sbjct: 280 LLKRIRMTSTVAW-NAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFA--SILSAAAN 336

Query: 85  LGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           +   ++  Q+     +     N F  + LI+ + K G +  A+ +F+    +N + WN++
Sbjct: 337 MTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAI 396

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           ++ +V+N    E +++F+ +       L+ D F   +V+GAC +L +L+ G+Q+H   + 
Sbjct: 397 LYGFVQNELQEETIQMFQYMRR---ADLEADDFTFVSVLGACINLYSLDLGRQVHCITIK 453

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           NG+D D  + ++++++Y K                                G ++ A+ +
Sbjct: 454 NGMDADLFVANAMLDMYSKL-------------------------------GAIDVAKAL 482

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F       SV WN++I G   N E+ EA+ +  +M+  G+  D  + A+ ++ACS++  +
Sbjct: 483 FSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAI 542

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E GKQ+H  + K  V  +  V S+L+D YSK                             
Sbjct: 543 ETGKQIHSASIKYNVCSNHAVGSSLIDLYSK----------------------------- 573

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
              G +E ++ +   +   S++  N++I GL QN    EA++LF  + K   +   F+  
Sbjct: 574 --FGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFT 631

Query: 441 SVISACANISSLELGEQV--FARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           S++S C    S  +G+QV  +   + I L+ D  +  SLV  Y KC  ++
Sbjct: 632 SILSGCTRPVSSVIGKQVHCYTLKSAI-LNQDTSLGISLVGIYLKCKLLE 680



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 146/330 (44%), Gaps = 65/330 (19%)

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +H+ IL  GL     LG +LV+LYG+ G    A + L         C  A          
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALAC-------CTGA---------- 117

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLS 312
                         SS   +S++S +  +    + L  F ++R + G   D   +A VLS
Sbjct: 118 ------------PASSAAASSVLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLS 165

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           ACS LG LEHG+QVH    K G    V   + L+D Y+K G   DA ++F  +   DTI 
Sbjct: 166 ACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTIC 225

Query: 373 LNTMITVY-----------------------------------SSCGRIEDAKHIFRTMP 397
             +MI  Y                                   +S GR+ DA+ + + + 
Sbjct: 226 WTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIR 285

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
             S ++WN++I   SQ+G   E   L+ +M K  L   + + AS++SA AN+++ + G Q
Sbjct: 286 MTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQ 345

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + A     GLD++  + +SL++ Y K G I
Sbjct: 346 IHATAVKHGLDANVFVGSSLINLYVKHGCI 375


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 237/488 (48%), Gaps = 73/488 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ++LL  C    S     ++H   +K    + T  I NRL+ +Y +CG    A  LFD M
Sbjct: 22  FSKLLNQCARSRSARDTSRVHACIIKSPFASETF-IQNRLIDVYGKCGCVDVARKLFDRM 80

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             RN FSWN++I  F K G  + ++ +F  MPQ +  SWN +ISGF + G    A   F 
Sbjct: 81  LERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFA 140

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M            H ++ N ++                          + + ACA L  
Sbjct: 141 QMHG----------HGFLVNEYS------------------------FGSALSACAGLQD 166

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L+ G QIHS +  +    D  +GS+LV++Y KC                           
Sbjct: 167 LKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKC--------------------------- 199

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
               G++  A+ VFD  T  S V WNS+I+ Y  N    EAL +F +M + GV  D  TL
Sbjct: 200 ----GRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTL 255

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 366
           ASV+SAC+++  ++ G+Q+H    K     +D+I+ +ALLD Y+K    ++A  +F  + 
Sbjct: 256 ASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMP 315

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
           +   +   +M++ Y+   +++ A+++F  M  K +I+WN++I G +QNG   EAL LF  
Sbjct: 316 IRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRL 375

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDF 480
           + +  +    ++  ++++ACAN++ L+LG Q  + V   G       DSD  +  SL+D 
Sbjct: 376 LKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDM 435

Query: 481 YCKCGFIK 488
           Y KCG ++
Sbjct: 436 YMKCGSVE 443



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 165/333 (49%), Gaps = 35/333 (10%)

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           L K L  DL   L  D+   + ++  CA   +     ++H+ I+ +    ++ + + L++
Sbjct: 6   LVKHLKGDL---LFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLID 62

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +YGKCG  + A ++ + M E + F  +++I  +   G ++DA  +F++        WNSM
Sbjct: 63  VYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSM 122

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           ISG+  +    EAL+ F +M  +G L +  +  S LSAC+ L  L+ G Q+H    +   
Sbjct: 123 ISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNY 182

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
           + DV + SAL+D YSK G    A  +F E+ V   +  N++IT Y               
Sbjct: 183 LSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCY--------------- 227

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
                            QNG   EAL +F  M K  +  D+ +LASV+SACA IS+++ G
Sbjct: 228 ----------------EQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEG 271

Query: 456 EQVFARVTIIG-LDSDQIISTSLVDFYCKCGFI 487
           +Q+ ARV       +D I+  +L+D Y KC  I
Sbjct: 272 QQIHARVVKCDEFRNDLILGNALLDMYAKCNRI 304



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 71/323 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C T  +I  G+Q+H   +K     + L + N LL MY +C    +A ++FD M
Sbjct: 255 LASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMM 314

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  S  +M+ G+ K    + +  +F+ M  K+  +WN LI+G  + GE + A  LF 
Sbjct: 315 PIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFR 374

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            + R +   W +                                 +    ++ ACA+LA 
Sbjct: 375 LLKRES--VWPT--------------------------------HYTFGNLLNACANLAD 400

Query: 188 LEYGKQIHSHILVNGLDF------DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           L+ G+Q HSH+L +G  F      D  +G+SL+++Y KCG   +  +V   M E D    
Sbjct: 401 LQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSW 460

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A+I GYA  G  N                               +AL +F KM  +G  
Sbjct: 461 NAMIVGYAQNGFGN-------------------------------KALEVFCKMLESGEA 489

Query: 302 EDASTLASVLSACSSLGFLEHGK 324
            D  T+  VL ACS  G L+ G+
Sbjct: 490 PDHVTMIGVLCACSHAGLLDEGR 512


>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 748

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 241/518 (46%), Gaps = 108/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C +  ++  G+++H H    G   S L + N L+ MY RCG+  DA L+F+ M  R
Sbjct: 112 ILKACTSPMALKWGRKIHDHIRHAG-FQSDLRLGNALIHMYARCGSMDDARLVFNGMVDR 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF--------------------SW---- 106
           +  +WN MI   ++ G   ++  LF  M Q+  F                     W    
Sbjct: 171 DIITWNVMIGRLVQHGRGHEAFSLFLQM-QREGFVPDTTTYLSMLNANACTGALGWVKEV 229

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             L+  +A++G +K AR +F+ M  RN I WNSMI    ++G  
Sbjct: 230 HSHALRAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCG 289

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIG-ACADLAALEYGKQIHSHILVNGLDFDSVL 209
            EA  LF+++     E L  DA     ++  ACA   AL++ +++H      GLDFD  +
Sbjct: 290 LEAFSLFRQMQR---EGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVRV 346

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++LV++Y K                               CG M+DARRVF    D   
Sbjct: 347 GNALVHMYAK-------------------------------CGSMDDARRVFYGMVDRDV 375

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V W  MI G   +    EA  LF +M+R G + + +T  S+L+  +S G LE  K+VH H
Sbjct: 376 VSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTH 435

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           A            +A LD++ + G                    N +I +Y+ CG IE+A
Sbjct: 436 AV-----------NAELDSHLRVG--------------------NALIHMYAKCGSIENA 464

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  M ++ +ISWN+MI GL+QNG   EA   F  M +     D  +L S+++ACA+ 
Sbjct: 465 RLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACAST 524

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +L+  ++V +     GL+SD  + ++LV  Y KCG I
Sbjct: 525 RALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRI 562



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 144/503 (28%), Positives = 220/503 (43%), Gaps = 106/503 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H H L+ G L S + +   L+ MY R G+  DA L+FD+M  RN  +WN+MI G  +
Sbjct: 227 KEVHSHALRAG-LESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQ 285

Query: 85  LGHKEKSLQLFNVMPQKN--------------------DFSW------------------ 106
            G   ++  LF  M ++                        W                  
Sbjct: 286 HGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVR 345

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L+  +AK G +  AR +F  M  R+ ++W  MI    ++GF REA  LF ++    
Sbjct: 346 VGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQR-- 403

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            E    +     +++   A   ALE+ K++H+H +   LD    +G++L+++Y K     
Sbjct: 404 -EGFVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAK----- 457

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                     CG + +AR VFDR  D   + WN+MI G   N  
Sbjct: 458 --------------------------CGSIENARLVFDRMEDRDIISWNAMIGGLAQNGH 491

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EA   F +M+R G + DA+TL S+L+AC+S   L+  K+VH HA + G+  D+ V SA
Sbjct: 492 GREAFSHFLEMQREGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSA 551

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+ TY+K G   DA  +F  +   D I  N MI                           
Sbjct: 552 LVHTYAKCGRIDDARLVFEGMASRDIITWNVMIG-------------------------- 585

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
                GL+Q+G   EA  LF  M  +    D  +  S++    +I +LE  ++V      
Sbjct: 586 -----GLAQHGREHEAFSLFLQMQDVGFVPDAITYLSILGGNVSIEALEWVKEVHRHAVR 640

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
            G D+D  +S++LV  Y KCG I
Sbjct: 641 AGFDTDPRVSSALVHMYTKCGDI 663



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 145/518 (27%), Positives = 234/518 (45%), Gaps = 106/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ    H  + + KQ+H   +K  +      +AN+L+ +Y+RCG   +   +FD +  +
Sbjct: 11  ILQKVFKHKDLVLAKQVHECIIKSEMEQHPY-VANKLMSIYIRCGRLQNTREVFDTLVEK 69

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW----- 106
           N F+W  MI G+ +  H E +++++N M Q                        W     
Sbjct: 70  NVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIH 129

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LI  +A+ G +  AR +FN M  R+ I WN MI   V++G   
Sbjct: 130 DHIRHAGFQSDLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGH 189

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  LF ++     E    D     +++ A A   AL + K++HSH L  GL+ D  +G+
Sbjct: 190 EAFSLFLQMQR---EGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVRVGT 246

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV++Y                               A  G + DAR VFD+ T+ + + 
Sbjct: 247 ALVHMY-------------------------------ARSGSIKDARLVFDKMTERNIIT 275

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS-ACSSLGFLEHGKQVHGHA 330
           WNSMI G   +    EA  LF +M+R G++ DA T  ++L+ AC+S G L+  ++VH  A
Sbjct: 276 WNSMIGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVHDDA 335

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            KVG+  DV V +AL+  Y+K                               CG ++DA+
Sbjct: 336 AKVGLDFDVRVGNALVHMYAK-------------------------------CGSMDDAR 364

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M ++ ++SW  MI GL+Q+G   EA  LF  M +     +  +  S+++  A+  
Sbjct: 365 RVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTG 424

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +LE  ++V        LDS   +  +L+  Y KCG I+
Sbjct: 425 ALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIE 462



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 47/275 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H H +    L+S L + N L+ MY +CG+  +A L+FD M  R+  SWNAMI G  +
Sbjct: 430 KEVHTHAVNAE-LDSHLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQ 488

Query: 85  LGHKEKSLQLFNVMPQKNDF---------------------------------------- 104
            GH  ++   F  M Q+  F                                        
Sbjct: 489 NGHGREAFSHFLEM-QREGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESDLR 547

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             + L+  +AK G +  AR +F  M  R+ I WN MI    ++G   EA  LF ++    
Sbjct: 548 VGSALVHTYAKCGRIDDARLVFEGMASRDIITWNVMIGGLAQHGREHEAFSLFLQMQD-- 605

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                 DA    +++G    + ALE+ K++H H +  G D D  + S+LV++Y KCGD +
Sbjct: 606 -VGFVPDAITYLSILGGNVSIEALEWVKEVHRHAVRAGFDTDPRVSSALVHMYTKCGDID 664

Query: 225 SA--NQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +A  +   NM+ + D      L+    N G +  A
Sbjct: 665 NAKLHFTPNMLPDLDGTAWGDLLDACRNHGDVEMA 699


>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 149/527 (28%), Positives = 246/527 (46%), Gaps = 100/527 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S+   +++H   +K         I NRL+  Y +CG   DA  +FD+M
Sbjct: 22  FAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVF-IQNRLIDAYGKCGCFDDARKIFDQM 80

Query: 68  PRRNCFSWNA-------------------------------MIEGFMKLGHKEKSLQLFN 96
           P +N FSWNA                               +I GF +    E++L  F 
Sbjct: 81  PEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFV 140

Query: 97  VMPQK----NDFSW-----------------------------------NMLISGFAKAG 117
            M +K    N++++                                   + LI  ++K G
Sbjct: 141 KMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCG 200

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            +  A+ +F+ M  RN ++WNS+I CY +NG +REA+ +F  +   +    + D   LA+
Sbjct: 201 FVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRM---MESGFEPDEVTLAS 257

Query: 178 VIGACADLAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           V+ ACA LAA + G +IH+ ++  + L  D +L ++LV++Y KCG  N A  V + M   
Sbjct: 258 VVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIR 317

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           +    ++++SGYA    +  AR +F +  + + V WN++I+GY  N E+ EAL LF  ++
Sbjct: 318 NVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLK 377

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           R  +     T  ++L+AC++L  L+ G+Q H H  K G                      
Sbjct: 378 REAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGF--------------------- 416

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
                F   +  D  + N +I +Y  CG +E+   IF  M  +  +SWN+MIVG +QNG 
Sbjct: 417 ----RFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGY 472

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
            +EAL LF  M     + D  ++   + AC++   ++ G + F+ +T
Sbjct: 473 GMEALGLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRKHFSSMT 519



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 160/318 (50%), Gaps = 32/318 (10%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+   A ++ +C    +L   ++IH+ I+     ++  + + L++ YGKCG F+ A ++ 
Sbjct: 18  DSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIF 77

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           + M E + F  +A++S     G +++  R+F    +     WNS+I+G+  ++   EAL 
Sbjct: 78  DQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALN 137

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
            F KM R G + +  T  S LSAC+ L  L+ G Q+HG   K   + DV + SAL+D YS
Sbjct: 138 YFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYS 197

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G    A ++F  +   + +  N++IT Y                              
Sbjct: 198 KCGFVDCAQRVFDGMMERNVVSWNSLITCY------------------------------ 227

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDS 469
             QNG   EAL++F  M +     D+ +LASV+SACA++++ + G ++ A V     L  
Sbjct: 228 -EQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRD 286

Query: 470 DQIISTSLVDFYCKCGFI 487
           D I+S +LVD Y KCG I
Sbjct: 287 DLILSNALVDMYAKCGRI 304


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  227 bits (579), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 141/521 (27%), Positives = 249/521 (47%), Gaps = 79/521 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++ C        GK +H    + G L   + + N L+  Y + G+      +F  M  R
Sbjct: 84  IIEHCAKLRRFEDGKMVHKQLDELG-LAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLR 142

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK----------NDFSW-------- 106
           +  +W++MI  +    H  K+   F      N+ P +          N++S         
Sbjct: 143 DVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIH 202

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            LI+ ++K GE+  A  +F  M  RN ++W ++I    ++    
Sbjct: 203 TVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLN 262

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  L++++   L   +  +A    +++ +C    AL  G++IHSHI   GL+ D V+ +
Sbjct: 263 EAFELYEKM---LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVAN 319

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+ +Y KC                             NC  + DAR  FDR +    + 
Sbjct: 320 ALITMYCKC-----------------------------NC--IQDARETFDRMSKRDVIS 348

Query: 272 WNSMISGYI-SNNEDTEAL----LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           W++MI+GY  S  +D E+L     L  +MRR GV  +  T  S+L ACS  G LE G+Q+
Sbjct: 349 WSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQI 408

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    KVG   D  + +A+ + Y+K G   +A ++FS+++  + +   +++T+Y  CG +
Sbjct: 409 HAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDL 468

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             A+ +F  M  ++++SWN MI G +Q+G   +  +L  +M     + D+ ++ S++ AC
Sbjct: 469 TSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEAC 528

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +S+LE G+ V A    +GL+SD +++TSL+  Y KCG +
Sbjct: 529 GALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEV 569



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 236/497 (47%), Gaps = 74/497 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI +L+ +L++CN +  +   +++H   +K   + + + +A  L+ MY +CG  + A  +
Sbjct: 179 RITFLS-ILKACNNYSMLEKAREIHT-VVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW------------- 106
           F +M  RN  SW A+I+   +     ++ +L+  M Q     N  ++             
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEAL 296

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LI+ + K   ++ AR  F+ M +R+ I+W++MI  Y
Sbjct: 297 NRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGY 356

Query: 145 VRNGFA-REAV-RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            ++G+  +E++  +F+ L     E +  +     +++ AC+   ALE G+QIH+ I   G
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVG 416

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
            + D  L +++ N+Y KCG    A QV + M+  +    ++L++ Y  CG +  A +VF 
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFS 476

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
             +  + V WN MI+GY  + +  +   L   M+  G   D  T+ S+L AC +L  LE 
Sbjct: 477 EMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALER 536

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK VH  A K+G+  D +VA++L+  YSK G  ++A  +F ++   DT+  N        
Sbjct: 537 GKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWN-------- 588

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                                  +M+ G  Q+G   EA+DLF  M K  +  ++ +  +V
Sbjct: 589 -----------------------AMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAV 625

Query: 443 ISACANISSLELGEQVF 459
           ISAC     ++ G ++F
Sbjct: 626 ISACGRAGLVQEGREIF 642



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 138/311 (44%), Gaps = 62/311 (19%)

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           +I  CA L   E GK +H  +   GL  D  LG+SL+N Y K GD  S  QV        
Sbjct: 84  IIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQV-------- 135

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
                                  F R T    V W+SMI+ Y  NN   +A   F +M+ 
Sbjct: 136 -----------------------FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
             +  +  T  S+L AC++   LE  +++H      G+  DV VA+AL            
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATAL------------ 220

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                              IT+YS CG I  A  IF+ M  ++++SW ++I   +Q+   
Sbjct: 221 -------------------ITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKL 261

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            EA +L+  M +  +  +  +  S++++C    +L  G ++ + ++  GL++D +++ +L
Sbjct: 262 NEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANAL 321

Query: 478 VDFYCKCGFIK 488
           +  YCKC  I+
Sbjct: 322 ITMYCKCNCIQ 332



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 31/203 (15%)

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EA+ L   +++ G+L +++T   ++  C+ L   E GK VH    ++G+  D+ +     
Sbjct: 61  EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG---- 116

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                      N++I  YS  G +   + +FR M  + +++W+S
Sbjct: 117 ---------------------------NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSS 149

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI   + N  P +A D F  M   ++  ++ +  S++ AC N S LE   ++   V   G
Sbjct: 150 MIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASG 209

Query: 467 LDSDQIISTSLVDFYCKCGFIKM 489
           +++D  ++T+L+  Y KCG I +
Sbjct: 210 METDVAVATALITMYSKCGEISL 232



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 115/234 (49%), Gaps = 21/234 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  GK +H   +K G+ + T+ +A  L+ MY +CG  T+A  +FD++  R
Sbjct: 524 ILEACGALSALERGKLVHAEAVKLGLESDTV-VATSLIGMYSKCGEVTEARTVFDKISNR 582

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           +  +WNAM+ G+ + G   +++ LF  M ++    N+ ++  +IS   +AG ++  R +F
Sbjct: 583 DTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIF 642

Query: 127 NDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILATVI 179
             M      +     +  M+    R G  +EA         + ++R+ C  D  +   ++
Sbjct: 643 RIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEA--------EEFIQRMPCEPDISVWHALL 694

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           GAC     ++  +    HIL       SV   +L N+Y + G ++ + +V  +M
Sbjct: 695 GACKSHDNVQLAEWAAHHILRLEPSNASVY-VTLSNIYAQAGRWDDSTKVRKVM 747


>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
           [Vitis vinifera]
          Length = 711

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/518 (28%), Positives = 252/518 (48%), Gaps = 80/518 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDE 66
           ARL Q C+++ +I   +++  H +     +   PI   NR ++ Y +C    DA  LF+E
Sbjct: 64  ARLFQICSSNLAIVEARKVESHLIT---FSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------------- 100
           MP+R+  SWNAMI  + + G  EK+L LF+ M +                          
Sbjct: 121 MPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLS 180

Query: 101 --------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                   K  F WN+++       + K   +  AR +F+++   NAI+WN ++  Y+  
Sbjct: 181 KQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEM 240

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G  +EAV +F ++    +  L    F  +  + AC+ ++AL+ G QIH   +  G D D 
Sbjct: 241 GNEKEAVVMFFKMIRANIRPLN---FTFSNALIACSSISALQEGIQIHGVAIRIGYDEDE 297

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           V+ SSL+++Y KCGD  SA ++  +    +    ++++SGYA  G+  +AR +FD   + 
Sbjct: 298 VVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPER 357

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S + WN+M++GY    +  EAL     MR+     D  T+  +L+ C+ L  +E GKQVH
Sbjct: 358 SVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVH 417

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   + G+  ++ V +ALL  Y K                               CG + 
Sbjct: 418 GFIYRHGLYSNLFVGNALLHMYGK-------------------------------CGNLR 446

Query: 388 DAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             +  F  M + +  ISWN+++   +++G   EA+ +F  M + +    KF+L +++SAC
Sbjct: 447 STRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEM-QWETTPSKFTLGTLLSAC 505

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ANI +LE G+Q+   +   G + D +   +LVD Y KC
Sbjct: 506 ANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKC 543



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 208/404 (51%), Gaps = 34/404 (8%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
            L    P    F  N  I  + K   L  AR LF +MP+R+  +WN+MI  Y + G A +
Sbjct: 85  HLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEK 144

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF  +N      +  +    A+V+G+CA + AL   KQIH  I+  G  ++ +LGSS
Sbjct: 145 ALWLFSRMNR---LGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSS 201

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++YGK                               C  M+DARR+FD   + +++ W
Sbjct: 202 LVDIYGK-------------------------------CRVMSDARRMFDEIENPNAISW 230

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N ++  Y+    + EA+++F KM R  +     T ++ L ACSS+  L+ G Q+HG A +
Sbjct: 231 NVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIR 290

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G  +D +V+S+L+D Y+K G    AC++F      + I   ++++ Y+  G+  +A+ +
Sbjct: 291 IGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVL 350

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP +S+ISWN+M+ G +      EAL+    M K    +D  ++  +++ CA +S +
Sbjct: 351 FDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDV 410

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           E G+QV   +   GL S+  +  +L+  Y KCG ++    +  Q
Sbjct: 411 ESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQ 454



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 209/479 (43%), Gaps = 113/479 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKG-----ILNSTL--------------------- 41
            A +L SC T  ++ + KQ+H   +K G     IL S+L                     
Sbjct: 164 FASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIE 223

Query: 42  -PIA---NRLLQMYMRCGNPTDALLLFDEMPRRN--------------CFSWNAMIEG-- 81
            P A   N +++ Y+  GN  +A+++F +M R N              C S +A+ EG  
Sbjct: 224 NPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQ 283

Query: 82  -----------------------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE 118
                                  + K G  E + ++F +   KN  SW  ++SG+A +G+
Sbjct: 284 IHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQ 343

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA---VRLFKELNSDLVERLQCDAFIL 175
            + AR LF++MP R+ I+WN+M+  Y       EA   V L ++   D+      D   +
Sbjct: 344 TREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDI------DHVTV 397

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++  CA L+ +E GKQ+H  I  +GL  +  +G++L+++YGKCG+  S       M  
Sbjct: 398 GLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSH 457

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
             D                               + WN++++ +  +    EA+ +F +M
Sbjct: 458 WRD------------------------------RISWNALLTSHARHGLSEEAMTIFGEM 487

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +         TL ++LSAC+++  LE GKQ+HG   + G   DV+   AL+D YSK    
Sbjct: 488 QWE-TTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCL 546

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVG 410
             A K+F E    D IL N+MI      GR  D   +F  M  + +    I++  +++G
Sbjct: 547 EYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLG 605



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 130/259 (50%), Gaps = 31/259 (11%)

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
           + ++     P  F L+  I  Y  C  ++DAR +F+         WN+MI+ Y       
Sbjct: 84  SHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAE 143

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +AL LF +M R G+  +  T ASVL +C+++  L   KQ+HG   K G   +VI+ S+L+
Sbjct: 144 KALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLV 203

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y K  + SDA ++F E++                               N + ISWN 
Sbjct: 204 DIYGKCRVMSDARRMFDEIE-------------------------------NPNAISWNV 232

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           ++    + G+  EA+ +F  M + ++R   F+ ++ + AC++IS+L+ G Q+      IG
Sbjct: 233 IVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIG 292

Query: 467 LDSDQIISTSLVDFYCKCG 485
            D D+++S+SL+D Y KCG
Sbjct: 293 YDEDEVVSSSLIDMYAKCG 311



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S  A +   CSS   +   ++V  H         + + +  ++TY K     DA +LF E
Sbjct: 61  SLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   D    N MIT Y                               +Q G   +AL LF
Sbjct: 121 MPQRDGGSWNAMITAY-------------------------------AQGGCAEKALWLF 149

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             MN+L +  ++ + ASV+ +CA + +L L +Q+   +   G   + I+ +SLVD Y KC
Sbjct: 150 SRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKC 209



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANR--LLQMYMRCGNPTDALLLFD 65
           L  LL +C    ++  GKQ+H   ++ G     + +  R  L+ MY +C     AL +F 
Sbjct: 498 LGTLLSACANIFALEQGKQIHGFMIRNGY---EIDVVARGALVDMYSKCRCLEYALKVFK 554

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKT 121
           E P R+   WN+MI G    G     L LF +M ++    +  ++  ++ G    G    
Sbjct: 555 EAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGL 614

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI-- 174
               FN M  +  I      + SMI  Y R+GF  E          D ++R+  +  +  
Sbjct: 615 GTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDEL--------EDFIKRMPFEPTVAM 666

Query: 175 LATVIGACADLAALEYGK 192
           L  V  AC++      GK
Sbjct: 667 LTRVFNACSEHGHSRLGK 684


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 216/419 (51%), Gaps = 44/419 (10%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++  + K G   ++ ++F+ MP  N F++N L+S  A A  L     LF  M +R+ +
Sbjct: 45  NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIV 104

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI------LATVIGACADLAALE 189
           ++N++I  +   G   +AVR++  L       LQ D+ +      ++T++ A + L    
Sbjct: 105 SYNAVIAGFSGGGSHAQAVRVYLAL-------LQADSSVRPSRITMSTMVMAASALGDRA 157

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            GKQ H  IL  G   ++ +GS LV++Y K      A +  + +   +    + +I+G  
Sbjct: 158 LGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLL 217

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            C  + +ARR+F+  TD  S+ W +M++G+  N  ++EAL +F +MR  G+  D  T  S
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L+AC +L  LE GKQ+H +  +    D+V V SAL+D YSK                  
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSK------------------ 319

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        C  I+ A+ +FR M  K++ISW ++IVG  QNG   EA+ +F  M +
Sbjct: 320 -------------CRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQR 366

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             +  D ++L SVIS+CAN++SLE G Q      + GL     +S +LV  Y KCG I+
Sbjct: 367 DGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 199/430 (46%), Gaps = 72/430 (16%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N F  + +++ + K+     + + F+ +  KN   +N +I+G  +   ++ AR LF  M 
Sbjct: 174 NAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMT 233

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R++I W +M+  + +NG   EA+ +F+ +     + +  D +   +++ AC  L+ALE 
Sbjct: 234 DRDSITWTTMVTGFTQNGLESEALEIFRRMR---FQGIAIDQYTFGSILTACGALSALEQ 290

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQIH++I+    D +  +GS+LV++Y K                               
Sbjct: 291 GKQIHAYIIRTRYDDNVFVGSALVDMYSK------------------------------- 319

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           C  +  A  VF R T  + + W ++I GY  N    EA+ +F +M+R+G+  D  TL SV
Sbjct: 320 CRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSV 379

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +S+C++L  LE G Q H  A   G++  + V++AL+  Y K G   DA +LF E+  +D 
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +    +++ Y+  GR +                               E +DLF  M   
Sbjct: 440 VSWTALVSGYAQFGRAK-------------------------------ETIDLFEKMLAK 468

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGF 486
            ++ D  +   V+SAC+    +E G   F  +     I+ +D      T ++D Y + G 
Sbjct: 469 GVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHY---TCMIDLYSRSGK 525

Query: 487 IKMDEYYLMQ 496
           +K  E ++ Q
Sbjct: 526 LKEAEEFIKQ 535



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 154/281 (54%), Gaps = 2/281 (0%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+  YGK G    A +V + M  P+ F  +AL+S  A+   ++D   +F   T    V +
Sbjct: 47  LLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSY 106

Query: 273 NSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           N++I+G+       +A+ ++  + +  + V     T+++++ A S+LG    GKQ H   
Sbjct: 107 NAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQI 166

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            ++G   +  V S L+D Y+K  +  DA + F E+   + ++ NTMIT    C  +E+A+
Sbjct: 167 LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEAR 226

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M ++  I+W +M+ G +QNG   EAL++F  M    + +D+++  S+++AC  +S
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +LE G+Q+ A +     D +  + ++LVD Y KC  IK+ E
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAE 327



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 24/243 (9%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY L  ++ SC    S+  G Q H   L  G+++  + ++N L+ +Y +CG+  DA  LF
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLALVSGLMH-YITVSNALVTLYGKCGSIEDAHRLF 431

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
           DEM   +  SW A++ G+ + G  ++++ LF  M  K    +  ++  ++S  ++AG ++
Sbjct: 432 DEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVE 491

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
             R+ F+ M + + I      +  MI  Y R+G  +EA    K++       +  DA   
Sbjct: 492 KGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMP------MHPDAIGW 545

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNM 232
            T++ AC     +E GK        N L+ D    +S V   +++   G +N   Q+   
Sbjct: 546 GTLLSACRLRGDMEIGKWAAE----NLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRG 601

Query: 233 MKE 235
           M++
Sbjct: 602 MRD 604



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 33/151 (21%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---------------------------- 401
           T LLN ++T Y   GR   A+ +F  MP+ +L                            
Sbjct: 41  TYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQ 100

Query: 402 ---ISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGE 456
              +S+N++I G S  GS  +A+ ++  + + D  +R  + ++++++ A + +    LG+
Sbjct: 101 RDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGK 160

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           Q   ++  +G  ++  + + LVD Y K   +
Sbjct: 161 QFHCQILRLGFGANAFVGSPLVDMYAKMSLV 191


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 226/443 (51%), Gaps = 61/443 (13%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+ ARL   C  H  + VG  LH H +K   L+  L +ANRL+ MY +C +  +A   FD
Sbjct: 12  DHCARLFSKCIQHKHLRVGMSLHSHLIKTA-LSFDLFLANRLIDMYSKCNSMENAQKAFD 70

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
           ++                               P +N  SWN +++ +++AG    AR +
Sbjct: 71  DL-------------------------------PIRNIHSWNTILASYSRAGFFSQARKV 99

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F++MP  N +++N++I  +  +G   E++ +F+++  D  + L  D   L ++ G CA L
Sbjct: 100 FDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDF-DLLALDEITLVSIAGTCACL 158

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            ALE+ +Q+H   +V GL+F+ ++ +++V+ YGKCGD +++  + + MKE D    ++++
Sbjct: 159 GALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMV 218

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
             Y    +++DA RVF      +   W ++I+  + N    EAL LF +M       +A 
Sbjct: 219 VAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAF 278

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T   VLSAC+ L  +  GK++HG          +I+  +                  SEL
Sbjct: 279 TFVGVLSACADLALIAKGKEIHG----------LIIRRS------------------SEL 310

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
              +  + N +I +YS  G ++ A+ +F  +  K ++SWNS+I G +QNG   EAL  F 
Sbjct: 311 NFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFR 370

Query: 426 NMNKLDLRMDKFSLASVISACAN 448
            M ++ +R +K +  +V+SAC++
Sbjct: 371 KMTEVGIRPNKVTFLAVLSACSH 393



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 169/320 (52%), Gaps = 9/320 (2%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A +   C     L  G  +HSH++   L FD  L + L+++Y KC    +A +  + +  
Sbjct: 15  ARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPI 74

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            +    + +++ Y+  G  + AR+VFD     + V +N++IS +  +    E++ +F +M
Sbjct: 75  RNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQM 134

Query: 296 RRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +++  L   D  TL S+   C+ LG LE  +QVHG A  +G+  ++IV +A++D Y K G
Sbjct: 135 QQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCG 194

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
            P  +  +FS +K  D +   +M+  Y+   R++DA  +F  MP K++ +W ++I  L +
Sbjct: 195 DPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVK 254

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD--- 470
           N    EALDLF  M +     + F+   V+SACA+++ +  G+++     II   S+   
Sbjct: 255 NKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHG--LIIRRSSELNF 312

Query: 471 --QIISTSLVDFYCKCGFIK 488
               +  +L+D Y K G +K
Sbjct: 313 PNVYVCNALIDLYSKSGDVK 332


>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 214/412 (51%), Gaps = 34/412 (8%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           ++++ ++K G  + + ++F   P  + F WN +I G++K G +K A  LF  MP R+ ++
Sbjct: 167 SVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVS 226

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WN+MI    ++GF  E +  F E+ +   +  + ++   A+V+ AC  +  LE+G  +H+
Sbjct: 227 WNTMISILSQHGFGAETLNTFLEMWN---QGFRPNSMTYASVLSACTSIYDLEWGAHLHA 283

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            I         V     +++Y  CG                      LI  YA CG++  
Sbjct: 284 RI---------VRMEPCLDVYAGCG----------------------LIDMYAKCGRLES 312

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           AR+VFD  T+ ++V W S+I G        EAL+LF++MR   V  D  TLA+VL  C S
Sbjct: 313 ARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLS 372

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
              +  G+Q+H H    G+   V VA+AL+  Y+K G    A   F  + + D I    M
Sbjct: 373 QKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAM 432

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           IT +S  G +E A+  F  MP +++ISWNSM+    Q G   E L ++  M +  ++ D 
Sbjct: 433 ITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDW 492

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            + ++ ISACA+++ L LG Q+ A+   +G  S+  ++ S+V  Y +CG I+
Sbjct: 493 ITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIE 544



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 224/474 (47%), Gaps = 65/474 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++ C +  SI + ++LH   +  G L S++ + N LL MY  CG  +DA  +F       
Sbjct: 1   MKECASLRSIPIARKLHAQLIFMG-LKSSIFLQNHLLNMYSNCGLISDAYRVFG------ 53

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                    G M               P  N +SWN +ISGFA +G+++ A  LF  MP 
Sbjct: 54  ---------GIM--------------FP--NVYSWNTMISGFADSGQMREAEKLFEKMPE 88

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R++++WNSM+  Y  NG     +++F  +  D       D F  + V+ A   L  L+  
Sbjct: 89  RDSVSWNSMMSGYFHNGELEATIKVFVSMVRDCC--CVPDPFSFSCVMKASGSLGYLKLA 146

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
            Q+H          D+ + +S++++Y KCG  + A +V      P  FC +++I GY+  
Sbjct: 147 LQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKY 206

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G +  A  +F +  +  +V WN+MIS    +    E L  F +M   G   ++ T ASVL
Sbjct: 207 GSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVL 266

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           SAC+S+  LE G  +H    ++    DV     L+D Y+K                    
Sbjct: 267 SACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAK-------------------- 306

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      CGR+E A+ +F  +   + +SW S+I G++Q G   EAL LF  M ++ 
Sbjct: 307 -----------CGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVP 355

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  D+F+LA+V+  C +   + +GEQ+ A     GLDS   ++ +LV  Y KCG
Sbjct: 356 VASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCG 409



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 235/496 (47%), Gaps = 53/496 (10%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           N +L   N ++  Y + G+   AL LF +MP R+  SWN MI    + G   ++L  F  
Sbjct: 190 NPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLE 249

Query: 98  MPQKN-------------------DFSWNM--------------------LISGFAKAGE 118
           M  +                    D  W                      LI  +AK G 
Sbjct: 250 MWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR 309

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L++AR +F+ +   NA++W S+I    + GF  EA+ LF ++    V     D F LATV
Sbjct: 310 LESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVAS---DQFTLATV 366

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +G C     +  G+Q+H+H +  GLD    + ++LV +Y KCGD   AN    +M   D 
Sbjct: 367 LGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDI 426

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +A+I+ ++  G +  AR  FD+  + + + WNSM++ Y+      E L ++ +M R 
Sbjct: 427 ISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLRE 486

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           GV  D  T ++ +SAC+ L  L  G Q+   A K+G   +V VA++++  YS+ G   +A
Sbjct: 487 GVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEA 546

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVG-LSQ 413
            K+FS + + + +  N M+  Y+  G+      IF  M N       IS+ S++   L +
Sbjct: 547 QKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSDLLGR 606

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
            G   +A +L   +N++  + +     ++++AC    + +L E   A   ++ LD++   
Sbjct: 607 AGQLEQAKNL---INQMPFKPNAAIWGALLAACRIHGNTKLAE--LAVKNLLELDAEGPG 661

Query: 474 STSLV-DFYCKCGFIK 488
           S  L+ + Y + G I+
Sbjct: 662 SYCLLANIYSESGKIQ 677



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 132/263 (50%), Gaps = 35/263 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C +   I +G+QLH H + +G L+S++P+AN L+ MY +CG+   A   F+ M
Sbjct: 363 LATVLGVCLSQKDISIGEQLHAHTITRG-LDSSVPVANALVTMYAKCGDVWKANHAFELM 421

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  SW AMI  F + G  EK+ + F+ MP++N  SW                     
Sbjct: 422 PIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISW--------------------- 460

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     NSM+  Y++ G+  E ++++ ++   L E ++ D    +T I ACADLA 
Sbjct: 461 ----------NSMLATYMQRGYWEEGLKVYIQM---LREGVKTDWITFSTSISACADLAV 507

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QI +     G   +  + +S+V +Y +CG    A ++ + +   +    +A+++G
Sbjct: 508 LILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAG 567

Query: 248 YANCGKMNDARRVFDRTTDTSSV 270
           YA  G+      +F++  +  +V
Sbjct: 568 YAQNGQGRKVIEIFEKMLNIGNV 590


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/463 (30%), Positives = 231/463 (49%), Gaps = 77/463 (16%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           V K+  + ++K G  N  L    RL     R G   D L+    +  + C S + +  G 
Sbjct: 87  VWKETIIGYVKNGFWNKAL----RLYYQMQRTGINPDKLVFLSVI--KACGSQSDLQAG- 139

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            +  H++   + F    + +      L S + K G L+ AR +F+ MP+R+ ++WN++I 
Sbjct: 140 -RKVHEDIIARGF----ESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y +NG   EA+ LF E+    V  ++ ++  L +V+  CA L ALE GKQIH + + +G
Sbjct: 195 GYSQNGQPYEALALFSEMQ---VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG 251

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           ++ D ++ + LVN+Y                               A CG +N A ++F+
Sbjct: 252 IESDVLVVNGLVNMY-------------------------------AKCGNVNTAHKLFE 280

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           R        WN++I GY  N++  EAL  F++M+  G+  ++ T+ SVL AC+ L  LE 
Sbjct: 281 RMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ 340

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+Q+HG+A + G   + +V +AL++ Y+K                               
Sbjct: 341 GQQIHGYAIRSGFESNDVVGNALVNMYAK------------------------------- 369

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG +  A  +F  MP K++++WN++I G SQ+G P EAL LF  M    ++ D F++ SV
Sbjct: 370 CGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSV 429

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + ACA+  +LE G+Q+       G +S+ ++ T LVD Y KCG
Sbjct: 430 LPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCG 472



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 137/511 (26%), Positives = 233/511 (45%), Gaps = 110/511 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C +   +  G+++H   + +G   S + +   L  MY +CG+  +A  +FD MP+R
Sbjct: 126 VIKACGSQSDLQAGRKVHEDIIARG-FESDVIVGTALASMYTKCGSLENARQVFDRMPKR 184

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP--------------- 99
           +  SWNA+I G+ + G   ++L LF                +VMP               
Sbjct: 185 DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIH 244

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + +    N L++ +AK G + TA  LF  MP R+  +WN++I  Y  N    
Sbjct: 245 CYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHH 304

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+  F  +    V  ++ ++  + +V+ ACA L ALE G+QIH + + +G + + V+G+
Sbjct: 305 EALAFFNRMQ---VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN 361

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LVN+Y KCG+ NSA ++   M + +    +A+ISGY+  G  +                
Sbjct: 362 ALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPH---------------- 405

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                          EAL LF +M+  G+  D+  + SVL AC+    LE GKQ+HG+  
Sbjct: 406 ---------------EALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTI 450

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G   +V+V + L+D Y+K G  + A KLF  +   D +   TMI  Y   G  ED   
Sbjct: 451 RSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGED--- 507

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                       AL LF  M +   ++D  +  ++++AC++   
Sbjct: 508 ----------------------------ALALFSKMQETGTKLDHIAFTAILTACSHAGL 539

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           ++ G Q F       + SD  ++  L  + C
Sbjct: 540 VDQGLQYFQ-----CMKSDYGLAPKLEHYAC 565



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 176/355 (49%), Gaps = 65/355 (18%)

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R NA+ W   I  YV+NGF  +A+RL+ ++    +     D  +  +VI AC   + L+ 
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINP---DKLVFLSVIKACGSQSDLQA 138

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+++H  I+  G + D ++G++L ++Y K                               
Sbjct: 139 GRKVHEDIIARGFESDVIVGTALASMYTK------------------------------- 167

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG + +AR+VFDR      V WN++I+GY  N +  EAL LF +M+ NG+  ++STL SV
Sbjct: 168 CGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSV 227

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +  C+ L  LE GKQ+H +A + G+  DV+V + L++ Y+K G  + A KLF        
Sbjct: 228 MPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFER------ 281

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                                    MP + + SWN++I G S N    EAL  F  M   
Sbjct: 282 -------------------------MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVR 316

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++ +  ++ SV+ ACA++ +LE G+Q+       G +S+ ++  +LV+ Y KCG
Sbjct: 317 GIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCG 371



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 131/281 (46%), Gaps = 45/281 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++  G+Q+H + ++ G  ++ + + N L+ MY +CGN   A  LF+ M
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDV-VGNALVNMYAKCGNVNSAYKLFERM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQ----------- 100
           P++N  +WNA+I G+ + GH  ++L LF                +V+P            
Sbjct: 384 PKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGK 443

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  ++ F  N+++       +AK G + TA+ LF  MP ++ ++W +MI  Y  +G
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
              +A+ LF ++        + D      ++ AC+    ++ G Q    +  + GL    
Sbjct: 504 HGEDALALFSKMQET---GTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKL 560

Query: 208 VLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG 247
              + LV+L G+ G  + AN ++ NM  EPD     AL+  
Sbjct: 561 EHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGA 601



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 19/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++  GKQ+H + ++ G   S + +   L+ +Y +CGN   A  LF+ M
Sbjct: 426 IVSVLPACAHFLALEQGKQIHGYTIRSG-FESNVVVGTGLVDIYAKCGNVNTAQKLFERM 484

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P ++  SW  MI  +   GH E +L LF+ M +     +  ++  +++  + AG +    
Sbjct: 485 PEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGL 544

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     +A     +  ++    R G   EA  + K ++      L+ DA +   +
Sbjct: 545 QYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMS------LEPDANVWGAL 598

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           +GAC     +E G+Q   H+    LD D+     L+ N+Y +   +    ++  MMKE
Sbjct: 599 LGACRIHCNIELGEQAAKHLF--ELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKE 654


>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/518 (28%), Positives = 252/518 (48%), Gaps = 80/518 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDE 66
           ARL Q C+++ +I   +++  H +     +   PI   NR ++ Y +C    DA  LF+E
Sbjct: 64  ARLFQICSSNLAIVEARKVESHLIT---FSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------------- 100
           MP+R+  SWNAMI  + + G  EK+L LF+ M +                          
Sbjct: 121 MPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLS 180

Query: 101 --------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                   K  F WN+++       + K   +  AR +F+++   NAI+WN ++  Y+  
Sbjct: 181 KQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEM 240

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G  +EAV +F ++    +  L    F  +  + AC+ ++AL+ G QIH   +  G D D 
Sbjct: 241 GNEKEAVVMFFKMIRANIRPLN---FTFSNALIACSSISALQEGIQIHGVAIRIGYDEDE 297

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           V+ SSL+++Y KCGD  SA ++  +    +    ++++SGYA  G+  +AR +FD   + 
Sbjct: 298 VVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPER 357

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S + WN+M++GY    +  EAL     MR+     D  T+  +L+ C+ L  +E GKQVH
Sbjct: 358 SVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVH 417

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   + G+  ++ V +ALL  Y K                               CG + 
Sbjct: 418 GFIYRHGLYSNLFVGNALLHMYGK-------------------------------CGNLR 446

Query: 388 DAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             +  F  M + +  ISWN+++   +++G   EA+ +F  M + +    KF+L +++SAC
Sbjct: 447 STRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEM-QWETTPSKFTLGTLLSAC 505

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ANI +LE G+Q+   +   G + D +   +LVD Y KC
Sbjct: 506 ANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKC 543



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 208/404 (51%), Gaps = 34/404 (8%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
            L    P    F  N  I  + K   L  AR LF +MP+R+  +WN+MI  Y + G A +
Sbjct: 85  HLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEK 144

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF  +N      +  +    A+V+G+CA + AL   KQIH  I+  G  ++ +LGSS
Sbjct: 145 ALWLFSRMNR---LGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSS 201

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++YGK                               C  M+DARR+FD   + +++ W
Sbjct: 202 LVDIYGK-------------------------------CRVMSDARRMFDEIENPNAISW 230

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N ++  Y+    + EA+++F KM R  +     T ++ L ACSS+  L+ G Q+HG A +
Sbjct: 231 NVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIR 290

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G  +D +V+S+L+D Y+K G    AC++F      + I   ++++ Y+  G+  +A+ +
Sbjct: 291 IGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVL 350

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP +S+ISWN+M+ G +      EAL+    M K    +D  ++  +++ CA +S +
Sbjct: 351 FDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDV 410

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           E G+QV   +   GL S+  +  +L+  Y KCG ++    +  Q
Sbjct: 411 ESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQ 454



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 209/479 (43%), Gaps = 113/479 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKG-----ILNSTL--------------------- 41
            A +L SC T  ++ + KQ+H   +K G     IL S+L                     
Sbjct: 164 FASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIE 223

Query: 42  -PIA---NRLLQMYMRCGNPTDALLLFDEMPRRN--------------CFSWNAMIEG-- 81
            P A   N +++ Y+  GN  +A+++F +M R N              C S +A+ EG  
Sbjct: 224 NPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQ 283

Query: 82  -----------------------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE 118
                                  + K G  E + ++F +   KN  SW  ++SG+A +G+
Sbjct: 284 IHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQ 343

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA---VRLFKELNSDLVERLQCDAFIL 175
            + AR LF++MP R+ I+WN+M+  Y       EA   V L ++   D+      D   +
Sbjct: 344 TREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDI------DHVTV 397

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++  CA L+ +E GKQ+H  I  +GL  +  +G++L+++YGKCG+  S       M  
Sbjct: 398 GLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSH 457

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
             D                               + WN++++ +  +    EA+ +F +M
Sbjct: 458 WRD------------------------------RISWNALLTSHARHGLSEEAMTIFGEM 487

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +         TL ++LSAC+++  LE GKQ+HG   + G   DV+   AL+D YSK    
Sbjct: 488 QWE-TTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCL 546

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVG 410
             A K+F E    D IL N+MI      GR  D   +F  M  + +    I++  +++G
Sbjct: 547 EYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLG 605



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 130/259 (50%), Gaps = 31/259 (11%)

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
           + ++     P  F L+  I  Y  C  ++DAR +F+         WN+MI+ Y       
Sbjct: 84  SHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAE 143

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +AL LF +M R G+  +  T ASVL +C+++  L   KQ+HG   K G   +VI+ S+L+
Sbjct: 144 KALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLV 203

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y K  + SDA ++F E++                               N + ISWN 
Sbjct: 204 DIYGKCRVMSDARRMFDEIE-------------------------------NPNAISWNV 232

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           ++    + G+  EA+ +F  M + ++R   F+ ++ + AC++IS+L+ G Q+      IG
Sbjct: 233 IVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIG 292

Query: 467 LDSDQIISTSLVDFYCKCG 485
            D D+++S+SL+D Y KCG
Sbjct: 293 YDEDEVVSSSLIDMYAKCG 311



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S  A +   CSS   +   ++V  H         + + +  ++TY K     DA +LF E
Sbjct: 61  SLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   D    N MIT Y                               +Q G   +AL LF
Sbjct: 121 MPQRDGGSWNAMITAY-------------------------------AQGGCAEKALWLF 149

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             MN+L +  ++ + ASV+ +CA + +L L +Q+   +   G   + I+ +SLVD Y KC
Sbjct: 150 SRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKC 209



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANR--LLQMYMRCGNPTDALLLFD 65
           L  LL +C    ++  GKQ+H   ++ G     + +  R  L+ MY +C     AL +F 
Sbjct: 498 LGTLLSACANIFALEQGKQIHGFMIRNGY---EIDVVARGALVDMYSKCRCLEYALKVFK 554

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKT 121
           E P R+   WN+MI G    G     L LF +M ++    +  ++  ++ G    G    
Sbjct: 555 EAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGL 614

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI-- 174
               FN M  +  I      + SMI  Y R+GF  E          D ++R+  +  +  
Sbjct: 615 GTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDEL--------EDFIKRMPFEPTVAM 666

Query: 175 LATVIGACADLAALEYGK 192
           L  V  AC++      GK
Sbjct: 667 LTRVFNACSEHGHSRLGK 684


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 154/523 (29%), Positives = 244/523 (46%), Gaps = 108/523 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA + ++ ++  S  VG+Q H   +K       + +   L+ MY + G   D L +F  M
Sbjct: 121 LAGIFKAESSLQSSTVGRQAHALVVKMSSFGD-IYVDTSLVGMYCKAGLVEDGLKVFAYM 179

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------NDFSW--------------- 106
           P RN ++W+ M+ G+   G  E+++++FN+  ++      +D+ +               
Sbjct: 180 PERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGL 239

Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N L++ ++K   L  A  +F+    RN+I W++M+  Y +
Sbjct: 240 GRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 299

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NG + EAV+LF  + S     ++   + +  V+ AC+D+  LE GKQ+HS +L  G    
Sbjct: 300 NGESLEAVKLFSRMFS---AGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF--- 353

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                       E   F  +AL+  YA  G + DAR+ FD   +
Sbjct: 354 ----------------------------ERHLFATTALVDMYAKAGCLADARKGFDCLQE 385

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
               +W S+ISGY+ N+++ EAL+L+ +M+  G++ +  T+ASVL ACSSL  LE GKQV
Sbjct: 386 RDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQV 445

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HGH  K G   +V + SAL   YSK                               CG +
Sbjct: 446 HGHTIKHGFGLEVPIGSALSTMYSK-------------------------------CGSL 474

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           ED   +FR  PNK ++SWN+MI GLS NG   EAL+LF  M    +  D  +  ++ISAC
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISAC 534

Query: 447 ANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIK 488
           ++   +E G   F  ++  IGLD        +VD   + G +K
Sbjct: 535 SHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLK 577



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 221/518 (42%), Gaps = 110/518 (21%)

Query: 17  THHS----IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           THHS    +  G+ +H   ++ G  ++ +  AN L+  Y +CG    A  +F+ +  ++ 
Sbjct: 22  THHSQQRNLVAGRAVHGQIIRTGA-STCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDV 80

Query: 73  FSWNAMIEGFMKLG-------------------------------HKEKSLQLFNVMPQK 101
            SWN++I G+ + G                                 E SLQ   V  Q 
Sbjct: 81  VSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQA 140

Query: 102 NDFSWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           +     M           L+  + KAG ++    +F  MP RN   W++M+  Y   G  
Sbjct: 141 HALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRV 200

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+++F     +  E    D ++   V+ + A    +  G+QIH   + NGL     L 
Sbjct: 201 EEAIKVFNLFLREKEEGSDSD-YVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALS 259

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV +Y K                               C  +N+A ++FD + D +S+
Sbjct: 260 NALVTMYSK-------------------------------CESLNEACKMFDSSGDRNSI 288

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W++M++GY  N E  EA+ LF +M   G+     T+  VL+ACS + +LE GKQ+H   
Sbjct: 289 TWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFL 348

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G    +   +AL+D Y+K G  +DA K F  L+  D  L  ++I+            
Sbjct: 349 LKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLIS------------ 396

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                              G  QN    EAL L+  M    +  +  ++ASV+ AC++++
Sbjct: 397 -------------------GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 437

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +LELG+QV       G   +  I ++L   Y KCG ++
Sbjct: 438 TLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLE 475



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 10/165 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C++  ++ +GKQ+H H +K G     +PI + L  MY +CG+  D  L+F   
Sbjct: 426 MASVLKACSSLATLELGKQVHGHTIKHG-FGLEVPIGSALSTMYSKCGSLEDGNLVFRRT 484

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P ++  SWNAMI G    G  +++L+LF  M     + +D ++  +IS  +  G ++   
Sbjct: 485 PNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGW 544

Query: 124 TLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSD 163
             FN M  +  +      +  M+    R G  +EA    +  N D
Sbjct: 545 FYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANID 589



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 54/340 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    +  GKQLH   LK G     L     L+ MY + G   DA   FD +  R
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLG-FERHLFATTALVDMYAKAGCLADARKGFDCLQER 386

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ------------------------ 100
           +   W ++I G+++    E++L L+       ++P                         
Sbjct: 387 DVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 446

Query: 101 ----KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
               K+ F   + I       ++K G L+    +F   P ++ ++WN+MI     NG   
Sbjct: 447 GHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGD 506

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG- 210
           EA+ LF+E+   L E ++ D      +I AC+    +E G   + +++ + +  D  +  
Sbjct: 507 EALELFEEM---LAEGMEPDDVTFVNIISACSHKGFVERG-WFYFNMMSDQIGLDPKVDH 562

Query: 211 -SSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDR----- 263
            + +V+L  + G    A + +         CL   L+S   N GK        ++     
Sbjct: 563 YACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALG 622

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           + ++S+ +  S I   +    D E   ++  MR NGV ++
Sbjct: 623 SRESSTYVQLSGIYTALGRMRDVER--VWKHMRANGVSKE 660



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 28/184 (15%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           STL   L+  S    L  G+ VHG   + G    +  A+ L++ Y+K G  + A  +F+ 
Sbjct: 15  STLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNA 74

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   D +  N++IT YS  G I                             S    + LF
Sbjct: 75  IICKDVVSWNSLITGYSQNGGIS----------------------------SSYTVMQLF 106

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M   D+  + ++LA +  A +++ S  +G Q  A V  +    D  + TSLV  YCK 
Sbjct: 107 REMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKA 166

Query: 485 GFIK 488
           G ++
Sbjct: 167 GLVE 170


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 231/487 (47%), Gaps = 69/487 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D+R   LA LLQ C    ++  GK++HLH    G+      ++N L+ MY +CG   +A
Sbjct: 57  LDSRT--LASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEA 114

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             +FD+M  RN +SWN M+ G+ KLG  + + +LF+ MP+K+  SWN ++   A+ G   
Sbjct: 115 RKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCG--- 171

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
                           W+             EA+R + E        +QC+ F  A V+ 
Sbjct: 172 ---------------YWD-------------EALRFYSEFRQ---LGIQCNGFSFAGVLT 200

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            C  L  +   +Q+H  ILV G   + VL SS+++ Y KCG    A ++ + M   D   
Sbjct: 201 VCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLA 260

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + ++SGYA  G M  A  +F    + + V W ++ISGY  N    +AL LF KM    V
Sbjct: 261 WTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHV 320

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T +S L AC+S+  L+HGKQ+H +  ++    + IV SAL+D YSK         
Sbjct: 321 RPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSK--------- 371

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIE 419
                                 CG +   + +F  M NK  ++ WN++I  L+Q+G   E
Sbjct: 372 ----------------------CGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEE 409

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLV 478
           A+ +  +M +   + DK +   +++AC++   ++ G   F  ++   G+   Q     L+
Sbjct: 410 AIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLI 469

Query: 479 DFYCKCG 485
           D   + G
Sbjct: 470 DLLGRAG 476



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 198/357 (55%), Gaps = 5/357 (1%)

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           PRR      +++    +N    EAV   + L       L+ D+  LA+++  CAD  AL 
Sbjct: 21  PRRRPCLVEAIVKLCKKNKL-NEAVSSLENLAR---RGLRLDSRTLASLLQHCADSRALR 76

Query: 190 YGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            GK++H H+ + GL    + L + L+N+Y KCG    A +V + M   + +  + ++SGY
Sbjct: 77  EGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGY 136

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           A  G +  AR++FD+  +   V WN+M+  +       EAL  + + R+ G+  +  + A
Sbjct: 137 AKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFA 196

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            VL+ C  L  +   +QVHG     G + +V+++S++LD Y K G+  DA KLF E+   
Sbjct: 197 GVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR 256

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +   TM++ Y+  G ++ A  +F  MP K+ +SW ++I G ++NG   +AL+LF  M 
Sbjct: 257 DVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMM 316

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
              +R D+F+ +S + ACA+I+SL+ G+Q+ A +  I    + I+ ++L+D Y KCG
Sbjct: 317 LFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCG 373



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVI 340
            N+  EA+     + R G+  D+ TLAS+L  C+    L  GK+VH H    G+      
Sbjct: 37  KNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTF 96

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           +++ L++ Y+K G   +A K+F ++   +    N M++ Y+  G I+ A+ +F  MP K 
Sbjct: 97  LSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKD 156

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           ++SWN+M++  +Q G   EAL  +    +L ++ + FS A V++ C  +  + L  QV  
Sbjct: 157 VVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHG 216

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ + G  S+ ++S+S++D Y KCG +
Sbjct: 217 QILVAGFLSNVVLSSSVLDAYVKCGLM 243



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 393 FRTMPNKS-----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           FRT P K      L+     IV L +     EA+    N+ +  LR+D  +LAS++  CA
Sbjct: 14  FRTNPRKPRRRPCLVE---AIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCA 70

Query: 448 NISSLELGEQVFARVTIIGLD-SDQIISTSLVDFYCKCG 485
           +  +L  G++V   + + GL      +S  L++ Y KCG
Sbjct: 71  DSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCG 109


>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/484 (28%), Positives = 235/484 (48%), Gaps = 68/484 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +  SC    ++ +GK++H   +K G L+  +P+AN LL MY + G+   A ++FD M
Sbjct: 75  VTNVFASCAALGALDIGKKIHSFVIKLG-LSGCVPVANSLLNMYAKAGDSVMAKIVFDRM 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW                               N++IS     G    A   F 
Sbjct: 134 RLRSISSW-------------------------------NIMISLHMHGGRADLALAQFE 162

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  R+ + WNSMI  Y ++GF +EA+ LF  +   L + L+ D F LA+++ ACA++  
Sbjct: 163 QMSERDVVTWNSMITGYSQHGFDKEALELFSRM---LEDSLKPDRFTLASILSACANIEN 219

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM--MKEPDDFCLSALI 245
           L  GKQIHS+I+    D   V+ ++L+++Y K G    A  ++    + + +    +AL+
Sbjct: 220 LNLGKQIHSYIIRTEFDISGVVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALL 279

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G +  AR +FD   D+  V W +MI GY+ N  + +A+ LF  M + G   ++ 
Sbjct: 280 DGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSF 339

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA++LS  S++  L HGKQ+H  A + G    V V +AL+  Y+K G  +DA ++F+ +
Sbjct: 340 TLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVFNLI 399

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
           +                               NK  +SW SMI+ L Q+G   E+++LF 
Sbjct: 400 Q------------------------------RNKDTVSWTSMIIALGQHGLGQESIELFE 429

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKC 484
            M  L ++ D  +   V+SAC ++  +E G   F  +T I  ++        ++D + + 
Sbjct: 430 KMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRA 489

Query: 485 GFIK 488
           G ++
Sbjct: 490 GLLQ 493



 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 217/392 (55%), Gaps = 5/392 (1%)

Query: 98  MPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
           MP K  FSWN +++G+AK G L  A ++F+++P R++++W +MI  Y + G    A+++F
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
             +  D V   Q   F +  V  +CA L AL+ GK+IHS ++  GL     + +SL+N+Y
Sbjct: 61  VAMMKDKVLPTQ---FTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMY 117

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            K GD   A  V + M+       + +IS + + G+ + A   F++ ++   V WNSMI+
Sbjct: 118 AKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMIT 177

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  +  D EAL LF +M  + +  D  TLAS+LSAC+++  L  GKQ+H +  +     
Sbjct: 178 GYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDI 237

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRIEDAKHIFRT 395
             +V +AL+  Y+K G    A  +  +  + D   I    ++  Y   G I  A+HIF +
Sbjct: 238 SGVVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDS 297

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           + +  +++W +MIVG  QNG   +A++LF  M K   R + F+LA+++S  +N++SL  G
Sbjct: 298 LKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHG 357

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +Q+ A     G +    +  +L+  Y K G I
Sbjct: 358 KQIHASAIRSGENLSVSVGNALITMYAKAGSI 389



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 148/264 (56%)

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           M     F  + +++GYA  G +  A  VFD   D  SV W +MI GY        A+ +F
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             M ++ VL    T+ +V ++C++LG L+ GK++H    K+G+   V VA++LL+ Y+K 
Sbjct: 61  VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G    A  +F  +++      N MI+++   GR + A   F  M  + +++WNSMI G S
Sbjct: 121 GDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYS 180

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q+G   EAL+LF  M +  L+ D+F+LAS++SACANI +L LG+Q+ + +     D   +
Sbjct: 181 QHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGV 240

Query: 473 ISTSLVDFYCKCGFIKMDEYYLMQ 496
           +  +L+  Y K G +++ +  + Q
Sbjct: 241 VQNALISMYAKTGGVEIAQSIVEQ 264


>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 231/487 (47%), Gaps = 69/487 (14%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D+R   LA LLQ C    ++  GK++HLH    G+      ++N L+ MY +CG   +A
Sbjct: 57  LDSRT--LASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEA 114

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             +FD+M  RN +SWN M+ G+ KLG  + + +LF+ MP+K+  SWN ++   A+ G   
Sbjct: 115 RKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCG--- 171

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
                           W+             EA+R + E        +QC+ F  A V+ 
Sbjct: 172 ---------------YWD-------------EALRFYSEFRQ---LGIQCNGFSFAGVLT 200

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            C  L  +   +Q+H  ILV G   + VL SS+++ Y KCG    A ++ + M   D   
Sbjct: 201 VCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLA 260

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + ++SGYA  G M  A  +F    + + V W ++ISGY  N    +AL LF KM    V
Sbjct: 261 WTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHV 320

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T +S L AC+S+  L+HGKQ+H +  ++    + IV SAL+D YSK         
Sbjct: 321 RPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSK--------- 371

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIE 419
                                 CG +   + +F  M NK  ++ WN++I  L+Q+G   E
Sbjct: 372 ----------------------CGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEE 409

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLV 478
           A+ +  +M +   + DK +   +++AC++   ++ G   F  ++   G+   Q     L+
Sbjct: 410 AIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLI 469

Query: 479 DFYCKCG 485
           D   + G
Sbjct: 470 DLLGRAG 476



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 198/357 (55%), Gaps = 5/357 (1%)

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           PRR      +++    +N    EAV   + L       L+ D+  LA+++  CAD  AL 
Sbjct: 21  PRRRPCLVEAIVKLCKKNKL-NEAVSSLENLAR---RGLRLDSRTLASLLQHCADSRALR 76

Query: 190 YGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            GK++H H+ + GL    + L + L+N+Y KCG    A +V + M   + +  + ++SGY
Sbjct: 77  EGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGY 136

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           A  G +  AR++FD+  +   V WN+M+  +       EAL  + + R+ G+  +  + A
Sbjct: 137 AKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFA 196

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            VL+ C  L  +   +QVHG     G + +V+++S++LD Y K G+  DA KLF E+   
Sbjct: 197 GVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR 256

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +   TM++ Y+  G ++ A  +F  MP K+ +SW ++I G ++NG   +AL+LF  M 
Sbjct: 257 DVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMM 316

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
              +R D+F+ +S + ACA+I+SL+ G+Q+ A +  I    + I+ ++L+D Y KCG
Sbjct: 317 LFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCG 373



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVI 340
            N+  EA+     + R G+  D+ TLAS+L  C+    L  GK+VH H    G+      
Sbjct: 37  KNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTF 96

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           +++ L++ Y+K G   +A K+F ++   +    N M++ Y+  G I+ A+ +F  MP K 
Sbjct: 97  LSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKD 156

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           ++SWN+M++  +Q G   EAL  +    +L ++ + FS A V++ C  +  + L  QV  
Sbjct: 157 VVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHG 216

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ + G  S+ ++S+S++D Y KCG +
Sbjct: 217 QILVAGFLSNVVLSSSVLDAYVKCGLM 243



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 393 FRTMPNKS-----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           FRT P K      L+     IV L +     EA+    N+ +  LR+D  +LAS++  CA
Sbjct: 14  FRTNPRKPRRRPCLVE---AIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCA 70

Query: 448 NISSLELGEQVFARVTIIGLD-SDQIISTSLVDFYCKCG 485
           +  +L  G++V   + + GL      +S  L++ Y KCG
Sbjct: 71  DSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCG 109


>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 212/453 (46%), Gaps = 98/453 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+QSC  + ++ VGK++H H    G +   L I+NRLL MY +C +  DA  LF+EM  R
Sbjct: 86  LIQSCLKNRALEVGKKVHDHIKLSGFI-PGLVISNRLLDMYAKCNDLVDAQKLFEEMGER 144

Query: 71  N-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           + C                                SWN+LISG AK G LK AR LF+ M
Sbjct: 145 DLC--------------------------------SWNVLISGCAKMGLLKEARKLFDTM 172

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           P R+  +W +MI  YVR+    EA+ L++ +     E L  + F +++V+ A A +  L 
Sbjct: 173 PERDNFSWTAMISGYVRHNRPHEALELYRLMKK--CENLTSNKFTVSSVLAAAAAIPCLR 230

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            GK+IH +I+  GLD D V+ S+L ++YGK                              
Sbjct: 231 IGKEIHGYIMRTGLDSDEVVWSALSDMYGK------------------------------ 260

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CG + +AR +FD+  +   V W +MI  Y  +    E   LF ++ R+G+  +  T A 
Sbjct: 261 -CGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDFTFAG 319

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL+AC+ LG    GKQVHGH  +         ASAL+  YSK                  
Sbjct: 320 VLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSK------------------ 361

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        CG + +A+ +FR MP   L+SW S+I G +QNG P EAL  F  + K
Sbjct: 362 -------------CGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLK 408

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARV 462
              R D  +   V+SACA+   ++ G Q F  +
Sbjct: 409 SGTRPDHITFVGVLSACAHAGLVDKGLQYFHSI 441



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 172/356 (48%), Gaps = 40/356 (11%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-------DAFILATVIGACADLAALEY 190
           +S I      G  +EA+ L  E N  L E +Q           I +++I +C    ALE 
Sbjct: 40  DSFIDRLCNEGRFKEAIALLCEQNR-LKEAIQVLNQIDRPSPSIYSSLIQSCLKNRALEV 98

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK++H HI ++G     V+ + L+++Y KC D   A ++   M E D    + LISG A 
Sbjct: 99  GKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAK 158

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLAS 309
            G + +AR++FD   +  +  W +MISGY+ +N   EAL L+  M++   +  +  T++S
Sbjct: 159 MGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVSS 218

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL+A +++  L  GK++HG+  + G+  D +V SAL D Y K G   +A  +F ++   D
Sbjct: 219 VLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRD 278

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            +    MI  Y   GR E                               E  +LF  + +
Sbjct: 279 VVTWTAMIDRYFEDGRRE-------------------------------EGFELFAELLR 307

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             ++ + F+ A V++ACA++    +G+QV   +T    D     +++LV  Y KCG
Sbjct: 308 SGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCG 363



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 119/209 (56%), Gaps = 5/209 (2%)

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
             N   EA+ + +++ R       S  +S++ +C     LE GK+VH H    G I  ++
Sbjct: 61  EQNRLKEAIQVLNQIDR----PSPSIYSSLIQSCLKNRALEVGKKVHDHIKLSGFIPGLV 116

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           +++ LLD Y+K     DA KLF E+   D    N +I+  +  G +++A+ +F TMP + 
Sbjct: 117 ISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMGLLKEARKLFDTMPERD 176

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVF 459
             SW +MI G  ++  P EAL+L+  M K + L  +KF+++SV++A A I  L +G+++ 
Sbjct: 177 NFSWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIH 236

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             +   GLDSD+++ ++L D Y KCG I+
Sbjct: 237 GYIMRTGLDSDEVVWSALSDMYGKCGSIE 265



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDL------RMDKFS---LASVISACANISS 451
           L S +S I  L   G   EA+ L C  N+L        ++D+ S    +S+I +C    +
Sbjct: 36  LSSKDSFIDRLCNEGRFKEAIALLCEQNRLKEAIQVLNQIDRPSPSIYSSLIQSCLKNRA 95

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           LE+G++V   + + G     +IS  L+D Y KC
Sbjct: 96  LEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKC 128


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 234/455 (51%), Gaps = 57/455 (12%)

Query: 30  HFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89
           H LK G  +    + N +L +Y + G    A  LFDEMP R    WN MI G+ K G++E
Sbjct: 124 HVLKSG-YDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 182

Query: 90  KSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           ++  LF+VM      +N  +W  +I+G AK G LKTAR  F+ MP R+ ++WN+M+  Y 
Sbjct: 183 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 242

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           + G   E +RLF ++ S     +Q D     TVI +C+ L     G    S  +V  LD 
Sbjct: 243 QGGAPEETIRLFNDMLSP--GNVQPDETTWVTVISSCSSL-----GDPCLSESIVRKLD- 294

Query: 206 DSV-------LGSSLVNLYGKCGDFNSANQV---LNMMKEPDDFCLSALISGYANCGKMN 255
           D+V       + ++L++++ KCG+  +A+++   L + K       +A+IS YA  G + 
Sbjct: 295 DTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLP 354

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSAC 314
            AR +FD+     +V WNSMI+GY  N E  +A+ LF +M        D  T+ SV SAC
Sbjct: 355 SARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSAC 414

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI-LL 373
             LG L                                G+ + A  +  E  +  +I + 
Sbjct: 415 GHLGEL--------------------------------GLGNWAVSILKENHIQISISVY 442

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N++I++YS CG ++DA  IF+ M  + L+S+N++I G +++G  +E+++L   M +  + 
Sbjct: 443 NSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIE 502

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            D+ +  ++++AC++   L  G+++F  +    +D
Sbjct: 503 PDRITYIAILTACSHAGLLGEGQRLFESIKFPDVD 537



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 162/337 (48%), Gaps = 47/337 (13%)

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC---- 251
           +H+L +G D D  + + ++ +Y K G    A ++ + M +      + +ISGY  C    
Sbjct: 123 AHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 182

Query: 252 -------------------------------GKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                          G +  AR  FD+  + S V WN+M+SGY 
Sbjct: 183 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 242

Query: 281 SNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDD 338
                 E + LF+ M   G V  D +T  +V+S+CSSLG     +  V      VG   +
Sbjct: 243 QGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPN 302

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRT 395
             V +ALLD ++K G    A K+F +L VY    ++  N MI+ Y+  G +  A+H+F  
Sbjct: 303 YFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDK 362

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLEL 454
           MP +  +SWNSMI G +QNG  ++A+ LF  M +  D + D+ ++ SV SAC ++  L L
Sbjct: 363 MPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGL 422

Query: 455 GEQVFARVTIIGLDSDQI---ISTSLVDFYCKCGFIK 488
           G      V+I+  +  QI   +  SL+  Y +CG ++
Sbjct: 423 GNWA---VSILKENHIQISISVYNSLISMYSRCGSMQ 456


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 170/625 (27%), Positives = 280/625 (44%), Gaps = 149/625 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC     I +GKQ+H   +K G   ++      L+ MY +CG+  DA  +FD + 
Sbjct: 186 AIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSF-CEGSLIDMYSKCGSLVDARKIFDAVV 244

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
             +  SW AMI G++++G  E++L++F  M +     +  ++  +I+     G L  A  
Sbjct: 245 DPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACD 304

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP  N +AWN MI  +V+ G   EA+  FK +    V+  +     L +V+ A A 
Sbjct: 305 LFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRS---TLGSVLSAIAS 361

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA------------------ 226
           L AL YG  +H+  +  GL+ +  +GSSL+N+Y KC    +A                  
Sbjct: 362 LEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAM 421

Query: 227 ----------NQVLNMMKE-------PDDFCLSALISG---------------------- 247
                     ++V+ +  E       PD+F  ++++S                       
Sbjct: 422 LGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNF 481

Query: 248 -------------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                        YA CG + +AR+ F+   +  +V WN++I GY+   ++ EA  +F +
Sbjct: 482 EYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRR 541

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG- 353
           M  +G+  D  +LAS+LS C++L  LE G+QVH    K G+   +   S+L+D Y K G 
Sbjct: 542 MILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGA 601

Query: 354 ----------MPS-------------------DACKLFSELK------------------ 366
                     MPS                   +A  LF E++                  
Sbjct: 602 IEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDAC 661

Query: 367 ---------------------VYDTILLN-TMITVYSSCGRIEDAKHIFRTMP-NKSLIS 403
                                +YD   L  +++ +Y +  R  DA  +F      KS I 
Sbjct: 662 TGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTIL 721

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W ++I G +QNG   EAL L+  M++ + R D+ + ASV+ AC+ ++SL  G  + + + 
Sbjct: 722 WTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIF 781

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            +GLDSD++  +++VD Y KCG +K
Sbjct: 782 HVGLDSDELTGSAVVDMYAKCGDMK 806



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 197/411 (47%), Gaps = 69/411 (16%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK G ++ A   FN + +R+ +AWNS++  Y R G   + +  F  L +  V   Q   
Sbjct: 126 YAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQ--- 182

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           F  A V+ +CA L  ++ GKQ+H  ++  G +F+S    SL+++Y KCG    A ++ + 
Sbjct: 183 FTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDA 242

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFD------------------------------ 262
           + +PD    +A+I+GY   G   +A +VF+                              
Sbjct: 243 VVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDA 302

Query: 263 -----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
                +  +T+ V WN MISG++    D EA+  F  M + GV    STL SVLSA +SL
Sbjct: 303 CDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASL 362

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L +G  VH  A K G+  +V V S+L++ Y+K                          
Sbjct: 363 EALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAK-------------------------- 396

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                C ++E AK +F  +  ++L+ WN+M+ G +QNG   + + LF  M       D+F
Sbjct: 397 -----CEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEF 451

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  S++SACA +  LE+G Q+ + +     + +  +  +LVD Y KCG ++
Sbjct: 452 TYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALE 502



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 155/561 (27%), Positives = 243/561 (43%), Gaps = 123/561 (21%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           RL Q+  T  +IH  + L   F  KG L S +      + +Y +CGN   A   F+++ +
Sbjct: 92  RLAQASRTSKTIH-AQTLKFGFGSKGRLGSAI------VDLYAKCGNVEFAAKAFNQLEK 144

Query: 70  RNCFSWNAMIEGFMKLGHKEK------SLQLFNVMPQK---------------------- 101
           R+  +WN+++  + + G  E+      SLQ   V P +                      
Sbjct: 145 RDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQV 204

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      N F    LI  ++K G L  AR +F+ +   + ++W +MI  YV+ G  
Sbjct: 205 HCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLP 264

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE----------------YGKQI 194
            EA+++F+++       L  D     TVI AC  L  L+                +   I
Sbjct: 265 EEALKVFEDMQK---LGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMI 321

Query: 195 HSHIL----VNGLDF------------DSVLGSSLVNL-------YGKCGDFNSANQVLN 231
             H+     +  +DF             S LGS L  +       YG      +  Q LN
Sbjct: 322 SGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLN 381

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
                + +  S+LI+ YA C KM  A++VFD   + + V+WN+M+ GY  N   ++ + L
Sbjct: 382 ----SNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKL 437

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +MR  G   D  T  S+LSAC+ L  LE G+Q+H    K     ++ V + L+D Y+K
Sbjct: 438 FSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAK 497

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G                                +E+A+  F  + N+  +SWN++IVG 
Sbjct: 498 CGA-------------------------------LEEARQQFEFIRNRDNVSWNAIIVGY 526

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            Q     EA ++F  M    +  D+ SLAS++S CAN+ +LE GEQV   +   GL +  
Sbjct: 527 VQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCL 586

Query: 472 IISTSLVDFYCKCGFIKMDEY 492
              +SL+D Y KCG I+   Y
Sbjct: 587 YAGSSLIDMYVKCGAIEAARY 607



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 231/530 (43%), Gaps = 116/530 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     + +G+QLH  F+ K      L + N L+ MY +CG   +A   F+ +  R
Sbjct: 456 ILSACACLECLEMGRQLH-SFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNR 514

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------P------------------------- 99
           +  SWNA+I G+++   ++++  +F  M      P                         
Sbjct: 515 DNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVH 574

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   Q   ++ + LI  + K G ++ AR +F+ MP R+ ++ N++I  Y +N    
Sbjct: 575 CFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV- 633

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+E+ +   E L       A+++ AC     L  G+QIH  I   GL +D     
Sbjct: 634 EAIDLFQEMQN---EGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDG---- 686

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR-TTDTSSV 270
                                     DF   +L+  Y N  +  DA  +F       S++
Sbjct: 687 --------------------------DFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTI 720

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +W ++ISG+  N    EAL L+ +M RN    D +T ASVL ACS L  L  G+ +H   
Sbjct: 721 LWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLI 780

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
             VG+  D +  SA++D Y+K                               CG ++ + 
Sbjct: 781 FHVGLDSDELTGSAVVDMYAK-------------------------------CGDMKSSV 809

Query: 391 HIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +F  M +K+ +ISWNSMIVG ++NG    AL +F  M    +R D  +   V++AC++ 
Sbjct: 810 QVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHA 869

Query: 450 SSLELGEQVFARVTIIGLDSDQIIS-----TSLVDFYCKCGFIKMDEYYL 494
             +  G ++F     I + S +I+        ++D   + GF+K  E ++
Sbjct: 870 GRVSEGREIFD----IMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFI 915



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 22/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C+   S+  G+ +H      G L+S     + ++ MY +CG+   ++ +F+EM
Sbjct: 757 FASVLRACSILASLGDGRMIHSLIFHVG-LDSDELTGSAVVDMYAKCGDMKSSVQVFEEM 815

Query: 68  PRRN-CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTA 122
             +N   SWN+MI GF K G+ E +L++F+ M     + +D ++  +++  + AG +   
Sbjct: 816 GSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEG 875

Query: 123 RTLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           R +F+ M       PR +  A   MI    R GF +EA     +LN       + +A I 
Sbjct: 876 REIFDIMVHSYKIVPRLDHCA--CMIDLLGRWGFLKEAEEFIDKLN------FEPNAMIW 927

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           AT++GAC        G++  +  L+     +S     L N+Y   G+++  N V   M+E
Sbjct: 928 ATLLGACRIHGDDIRGRRA-AEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMRE 986


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 136/415 (32%), Positives = 231/415 (55%), Gaps = 6/415 (1%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++  + K G+   + +LF+ MP +  FSWN ++S +AK G++ ++   F+ +P+R+++
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSV 112

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W +MI  Y   G   +A+R+  E+  + +E  Q   F L  V+ + A    LE GK++H
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQ---FTLTNVLASVAATRCLETGKKVH 169

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           S I+  GL  +  + +SL+N+Y KCGD   A  V + M   D    +A+I+ +   G+M+
Sbjct: 170 SFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMD 229

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 314
            A   F++  +   V WNSMISGY     D  AL +F KM R+ +L  D  TLASVLSAC
Sbjct: 230 LAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSAC 289

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-- 372
           ++L  L  G+Q+H H    G     IV +AL+  YS+ G    A +L  +    D  +  
Sbjct: 290 ANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              ++  Y   G + +AK+IF ++ ++ +++W +MIVG  Q+G   EA++LF +M   + 
Sbjct: 350 FTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQ 409

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           R + ++LA+++S  ++++SL  G+Q+       G      +S +L+  Y K G I
Sbjct: 410 RPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSI 464



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 229/495 (46%), Gaps = 77/495 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L S      +  GK++H   +K G L   + ++N LL MY +CG+P  A ++FD M
Sbjct: 149 LTNVLASVAATRCLETGKKVHSFIVKLG-LRGNVSVSNSLLNMYAKCGDPMMAKVVFDRM 207

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                            K+  SWN +I+   + G++  A   F 
Sbjct: 208 V-------------------------------VKDISSWNAMIALHMQVGQMDLAMAQFE 236

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  R+ + WNSMI  Y + G+   A+ +F ++  D +  L  D F LA+V+ ACA+L  
Sbjct: 237 QMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSM--LSPDRFTLASVLSACANLEK 294

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC--LSALI 245
           L  G+QIHSHI+  G D   ++ ++L+++Y +CG   +A +++      D      +AL+
Sbjct: 295 LCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G MN+A+ +FD   D   V W +MI GY  +    EA+ LF  M       ++ 
Sbjct: 355 DGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSY 414

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA++LS  SSL  L HGKQ+HG A K G I  V V++AL+  Y+K G  + A + F  +
Sbjct: 415 TLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLI 474

Query: 366 KV-YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   DT+   +MI   +  G  E                               EAL+LF
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAE-------------------------------EALELF 503

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVD 479
             M    LR D  +   V SAC +   +  G Q F  +     D D+II T      +VD
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK----DVDKIIPTLSHYACMVD 559

Query: 480 FYCKCGFIKMDEYYL 494
            + + G ++  + ++
Sbjct: 560 LFGRAGLLQEAQEFI 574



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 166/296 (56%), Gaps = 1/296 (0%)

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +H  ++ +GL F   L ++L+N+Y K G    A ++ + M     F  + ++S YA  G 
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           M+ +   FDR     SV W +MI GY +  +  +A+ +  +M R G+     TL +VL++
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            ++   LE GK+VH    K+G+  +V V+++LL+ Y+K G P  A  +F  + V D    
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-L 432
           N MI ++   G+++ A   F  M  + +++WNSMI G +Q G  + ALD+F  M +   L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             D+F+LASV+SACAN+  L +GEQ+ + +   G D   I+  +L+  Y +CG ++
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVE 331



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 180/428 (42%), Gaps = 101/428 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     + +G+Q+H H +  G   S + + N L+ MY RCG    A  L ++ 
Sbjct: 282 LASVLSACANLEKLCIGEQIHSHIVTTGFDISGI-VLNALISMYSRCGGVETARRLIEQR 340

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++       IEGF                          L+ G+ K G++  A+ +F+
Sbjct: 341 GTKDL-----KIEGF------------------------TALLDGYIKLGDMNEAKNIFD 371

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  R+ +AW +MI  Y ++G   EA+ LF+ +   + E  + +++ LA ++   + LA+
Sbjct: 372 SLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM---VGEEQRPNSYTLAAMLSVASSLAS 428

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L +GKQIH              GS++     K G+  S +              +ALI+ 
Sbjct: 429 LGHGKQIH--------------GSAV-----KSGEIYSVS------------VSNALITM 457

Query: 248 YANCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           YA  G +  A R FD    +  +V W SMI     +    EAL LF  M   G+  D  T
Sbjct: 458 YAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHIT 517

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACK----- 360
              V SAC+  G +  G+Q       V  +I  +   + ++D + + G+  +A +     
Sbjct: 518 YVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577

Query: 361 -----------LFSELKVYDTILL-------------------NTMITVYSSCGRIEDAK 390
                      L S  +VY  I L                   + +  +YS+CG+ E+A 
Sbjct: 578 PIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAA 637

Query: 391 HIFRTMPN 398
            I ++M +
Sbjct: 638 KIRKSMKD 645


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 147/485 (30%), Positives = 241/485 (49%), Gaps = 70/485 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+   ++  G+Q+H   LK G  +S    A  L+ MY +C    DA  +FD +
Sbjct: 163 LAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAG-LVDMYAKCVEVKDARRVFDGI 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              +   W +MI G+ ++G  +++L LF+ M +     +  ++  +IS  A  G L  AR
Sbjct: 222 ACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDAR 281

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           TL   +   + +AWN++I  Y ++G   E   L+K++     + L       A+++ A A
Sbjct: 282 TLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKR---QGLMPTRSTFASMLSAAA 338

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            + A + G+QIH+  + +GLD +  +GSSL+NLY K G                  C+S 
Sbjct: 339 SMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHG------------------CIS- 379

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                       DA++VFD +T+ + VMWN+M+ G++ N+   E + +F  MRR  +  D
Sbjct: 380 ------------DAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEAD 427

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  SVL AC +L  L+ G+QVH    K  +  D+ VA+A+LD YSK G          
Sbjct: 428 DFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGA--------- 478

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                                 I+ AK +F  +P K  +SWN++IVGL+ N    EA+ +
Sbjct: 479 ----------------------IDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYM 516

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
              M    +  D+ S A+ I+AC+NI + E G+Q+        + S+  + +SL+D Y K
Sbjct: 517 LKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSK 576

Query: 484 CGFIK 488
            G ++
Sbjct: 577 FGDVE 581



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/530 (26%), Positives = 247/530 (46%), Gaps = 116/530 (21%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M TR  + A +L +  +  +   G+Q+H   +K G L++ + + + L+ +Y++ G  +DA
Sbjct: 324 MPTRSTF-ASMLSAAASMTAFDEGQQIHAAAVKHG-LDANVFVGSSLINLYVKHGCISDA 381

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW---------- 106
             +FD    +N   WNAM+ GF++   +E+++Q+F  M     + +DF++          
Sbjct: 382 KKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINL 441

Query: 107 -------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                    N ++  ++K G +  A+ LF+ +P +++++WN++I
Sbjct: 442 DSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALI 501

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQC-----DAFILATVIGACADLAALEYGKQIHS 196
                N    EAV + K        R++C     D    AT I AC+++ A E GKQIH 
Sbjct: 502 VGLAHNEEEEEAVYMLK--------RMKCYGIAPDEVSFATAINACSNIRATETGKQIHC 553

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
             +   +  +  +GSSL++LY K GD  S+                              
Sbjct: 554 ASIKYNVCSNHAVGSSLIDLYSKFGDVESS------------------------------ 583

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
            R+V      +S V  N++I+G + NN + EA+ LF ++ ++G      T AS+LS C+ 
Sbjct: 584 -RKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTG 642

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
                 GKQVH +  K          SALL+                     DT L  ++
Sbjct: 643 PVSSVIGKQVHSYTLK----------SALLNQ--------------------DTSLGISL 672

Query: 377 ITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           + +Y  C  +EDA  +   +P+ K+L+ W + I G +QNG   ++L +F  M   D+R D
Sbjct: 673 VGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSD 732

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + + ASV+ AC+ I++L  G+++   +   G  S +  +++L+D Y KCG
Sbjct: 733 EATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCG 782



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 185/389 (47%), Gaps = 80/389 (20%)

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQC------DAFILATVIGACADLAALEYGKQ 193
           ++ C+ R+G  R+ +        D  +RL+C      D F LA V+ AC+ L ALE G+Q
Sbjct: 130 VLSCHARSGSPRDVL--------DAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQ 181

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY----- 248
           +H  +L +G    +   + LV++Y KC +   A +V + +  PD  C +++I+GY     
Sbjct: 182 VHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGR 241

Query: 249 ------------------------------ANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                                         A+ G+++DAR +  R    S+V WN++IS 
Sbjct: 242 YQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISS 301

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y  +  ++E   L+  M+R G++   ST AS+LSA +S+   + G+Q+H  A K G+  +
Sbjct: 302 YSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDAN 361

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           V V S+L++ Y K G                                I DAK +F     
Sbjct: 362 VFVGSSLINLYVKHGC-------------------------------ISDAKKVFDFSTE 390

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           K+++ WN+M+ G  QN    E + +F  M + DL  D F+  SV+ AC N+ SL++G QV
Sbjct: 391 KNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQV 450

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                   +D+D  ++ +++D Y K G I
Sbjct: 451 HCITIKNSMDADLFVANAMLDMYSKLGAI 479



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 213/469 (45%), Gaps = 79/469 (16%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM------PRRNCFSWNAMIEGFMK 84
            LK+  + ST+   N ++  Y + G  ++   L+ +M      P R+ F+  +M+     
Sbjct: 283 LLKRIQMPSTVAW-NAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFA--SMLSAAAS 339

Query: 85  LGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           +   ++  Q+     +     N F  + LI+ + K G +  A+ +F+    +N + WN+M
Sbjct: 340 MTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAM 399

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           ++ +V+N    E +++F+ +       L+ D F   +V+GAC +L +L+ G+Q+H   + 
Sbjct: 400 LYGFVQNDLQEETIQMFQYMRR---ADLEADDFTFVSVLGACINLDSLDIGRQVHCITIK 456

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           N +D D  + ++++++Y K                                G ++ A+ +
Sbjct: 457 NSMDADLFVANAMLDMYSKL-------------------------------GAIDVAKAL 485

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F       SV WN++I G   N E+ EA+ +  +M+  G+  D  + A+ ++ACS++   
Sbjct: 486 FSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRAT 545

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E GKQ+H  + K  V  +  V S+L+D YSK                             
Sbjct: 546 ETGKQIHCASIKYNVCSNHAVGSSLIDLYSK----------------------------- 576

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
              G +E ++ +   +   S++  N++I GL QN    EA++LF  + K   +   F+ A
Sbjct: 577 --FGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFA 634

Query: 441 SVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGFIK 488
           S++S C    S  +G+QV +       L+ D  +  SLV  Y KC  ++
Sbjct: 635 SILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLE 683



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 20/246 (8%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R D    A +L++C+   ++  GK++H   +K G + S    A+ L+ MY +CG+   
Sbjct: 728 DVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFV-SYETAASALMDMYSKCGDVIS 786

Query: 60  ALLLFDEMP-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFA 114
           +  +F E+  ++N   WN+MI GF K G+  ++L LF  M +     ++ +   ++   +
Sbjct: 787 SFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIACS 846

Query: 115 KAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
            AG +   R LF+ M +   I      +  +I    R G  +EA  +  +L        +
Sbjct: 847 HAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLP------FR 900

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D  I AT + AC      E GK + +  LV      S     L +L+   G++  A   
Sbjct: 901 ADGVIWATFLAACQMHKDEERGK-VAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVA 959

Query: 230 LNMMKE 235
              M+E
Sbjct: 960 REAMRE 965



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 412 SQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           +++GSP + LD F  +   +    D+F LA V+SAC+ + +LE G QV   V   G  S 
Sbjct: 135 ARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSS 194

Query: 471 QIISTSLVDFYCKCGFIK 488
                 LVD Y KC  +K
Sbjct: 195 AFCQAGLVDMYAKCVEVK 212


>gi|302776320|ref|XP_002971335.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
 gi|300161317|gb|EFJ27933.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
          Length = 614

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 234/476 (49%), Gaps = 60/476 (12%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+ C +   +   KQ      + G       + N L+Q Y +CG+  DA  +FD + 
Sbjct: 16  ASILRDCASTRDLTAAKQAQWEIARDG-FGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQ 74

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
           RRN FSW  M+  +   GH  ++L L                  + K G L+ A+ +F  
Sbjct: 75  RRNIFSWTIMLGAYADNGHGREALGLM-----------------YGKCGHLEEAKAVFAT 117

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           +  RN ++WN+M+  Y +NG   EAVRL++ +     E ++ DA    +V+         
Sbjct: 118 LVERNRVSWNAMLAAYAQNGHCEEAVRLYRLM---CFEGIKPDATTFVSVLDGWKGEG-- 172

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
           E+G++IH  ++ +G   ++ L ++LV++YG                              
Sbjct: 173 EHGRRIHDQVVESGFGSNTTLANALVSMYG------------------------------ 202

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
            + G+++DAR VFD   + + V WN+M++ Y  N    EA+ LF KM    V  D  +  
Sbjct: 203 -SGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDLFWKMD---VAPDTVSFV 258

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           +VL AC  +   E G+ VH H    G    V+V+++L++ Y +     +A + F + +  
Sbjct: 259 NVLGACMDI---EEGRLVHEHIKASGFPVGVLVSTSLVNMYGRFLRLEEAKQCFEQARER 315

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +  N+M+  Y+  G +E+AK +F  + +K ++ W +++   S+N     AL ++ NM+
Sbjct: 316 DRVCWNSMVGAYAQNGCMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMD 375

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
              +  ++F+ +S++S CA+  +L  G++V      +G D D I+ T+LVDFY KC
Sbjct: 376 LEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKC 431



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 219/476 (46%), Gaps = 88/476 (18%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND 103
           MY +CG+  +A  +F  +  RN  SWNAM+  + + GH E++++L+ +M      P    
Sbjct: 101 MYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATT 160

Query: 104 F-----SW--------------------------NMLISGFAKAGELKTARTLFNDMPRR 132
           F      W                          N L+S +   G +  AR +F+ +  +
Sbjct: 161 FVSVLDGWKGEGEHGRRIHDQVVESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEK 220

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
             ++WN+M+  Y +NG   EAV LF +++      +  D      V+GAC D+   E G+
Sbjct: 221 TVVSWNAMLTAYAQNGRYGEAVDLFWKMD------VAPDTVSFVNVLGACMDI---EEGR 271

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
            +H HI  +G     ++ +SLVN+YG+      A Q     +E D  C ++++  YA  G
Sbjct: 272 LVHEHIKASGFPVGVLVSTSLVNMYGRFLRLEEAKQCFEQARERDRVCWNSMVGAYAQNG 331

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            M +A+ VFDR      V+W ++++ Y  N +   ALL++  M   G+ ++  T +S++S
Sbjct: 332 CMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVS 391

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
            C+    L  G++VH H   VG   DVIV + L+D YSK                     
Sbjct: 392 VCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSK--------------------- 430

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN---- 428
                     C  ++ A+ +F  +  K +++WN MI G  +NG   EA+ L+  M+    
Sbjct: 431 ----------CHDVDTARSVFDGIEGKDIVTWNVMITGFVRNGHGREAVRLYQKMDLPPD 480

Query: 429 --KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
              + +  D+ +  SV+ AC++  S++ G  +F    +     D  I+T+   + C
Sbjct: 481 SLTMGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGV-----DYGIATNTKHYVC 531



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 151/367 (41%), Gaps = 99/367 (26%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H   ++ G   S   +AN L+ MY   G   DA  +FD +  +   SWNAM+  + 
Sbjct: 175 GRRIHDQVVESG-FGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYA 233

Query: 84  KLGHKEKSLQLF---NVMP-------------------------QKNDFSWNMLISG--- 112
           + G   +++ LF   +V P                         + + F   +L+S    
Sbjct: 234 QNGRYGEAVDLFWKMDVAPDTVSFVNVLGACMDIEEGRLVHEHIKASGFPVGVLVSTSLV 293

Query: 113 --FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLV---- 165
             + +   L+ A+  F     R+ + WNSM+  Y +NG   EA  +F  + S D+V    
Sbjct: 294 NMYGRFLRLEEAKQCFEQARERDRVCWNSMVGAYAQNGCMEEAKAVFDRVASKDIVLWTA 353

Query: 166 -----------------------ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
                                  E ++ + F  ++++  CAD  AL  G+++H H +  G
Sbjct: 354 LLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVG 413

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
            D D ++G++LV+ Y KC D ++A                               R VFD
Sbjct: 414 YDKDVIVGTTLVDFYSKCHDVDTA-------------------------------RSVFD 442

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR------RNGVLEDASTLASVLSACSS 316
                  V WN MI+G++ N    EA+ L+ KM         G++ D  T  SVL ACS 
Sbjct: 443 GIEGKDIVTWNVMITGFVRNGHGREAVRLYQKMDLPPDSLTMGIMPDELTFLSVLFACSH 502

Query: 317 LGFLEHG 323
            G ++ G
Sbjct: 503 GGSIQQG 509



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 16/202 (7%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S+ AS+L  C+S   L   KQ      + G   D  + + L+  Y K G   DA ++F  
Sbjct: 13  SSHASILRDCASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDR 72

Query: 365 LKVYD----TILLN----------TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           ++  +    TI+L            +  +Y  CG +E+AK +F T+  ++ +SWN+M+  
Sbjct: 73  IQRRNIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAA 132

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            +QNG   EA+ L+  M    ++ D  +  SV+         E G ++  +V   G  S+
Sbjct: 133 YAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEG--EHGRRIHDQVVESGFGSN 190

Query: 471 QIISTSLVDFYCKCGFIKMDEY 492
             ++ +LV  Y   G +    Y
Sbjct: 191 TTLANALVSMYGSGGRVDDARY 212



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++  C    ++  G+++HLH +  G  +  + +   L+  Y +C +   A  +FD +  +
Sbjct: 389 IVSVCADAEALAEGQKVHLHTVSVG-YDKDVIVGTTLVDFYSKCHDVDTARSVFDGIEGK 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +  +WN MI GF++ GH  ++++L+  M    D
Sbjct: 448 DIVTWNVMITGFVRNGHGREAVRLYQKMDLPPD 480


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 232/482 (48%), Gaps = 68/482 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C        GK +HLH    G    T  +AN L+ MY  CG   +A  +FD+M  R
Sbjct: 68  LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVR 127

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N +SWN M+ G+ KLG    + +LF+ M +K+  SWN ++  +AK G    A  L+ D  
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R +              GF                     +AF  A V+  C  L  L+ 
Sbjct: 188 RLDM-------------GF---------------------NAFSFAGVLILCVKLKELQL 213

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            KQ+H  +LV G   + VL SS+V+ Y KCG+   A  + + M   D    + ++SGYA 
Sbjct: 214 AKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAK 273

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G MN A  +F +  + + V W+++ISGY  N+   EAL  F KM + G+  +  T +S 
Sbjct: 274 WGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSC 333

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYD 369
           L AC+S+  L+HGKQVHG+  +     + IV S+L+D YSK GM   +C +F  +    D
Sbjct: 334 LCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQD 393

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            ++ NTMI+                                L+QNG   +A+ +F +M +
Sbjct: 394 VVVWNTMIS-------------------------------ALAQNGHGEKAMQMFNDMVE 422

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG-FI 487
             L+ D+ +   ++SAC++   ++ G + F  +T   G+  DQ   + L+D   + G F+
Sbjct: 423 SGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFV 482

Query: 488 KM 489
           ++
Sbjct: 483 EL 484



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 172/316 (54%), Gaps = 1/316 (0%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVLNM 232
           I   ++  CA     + GK +H H+   G    + ++ + L+ +Y +CG    A +V + 
Sbjct: 64  IFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDK 123

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           M   + +  + +++GYA  G +N+AR++FDR  +   V WN+++  Y       EA+ L+
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLY 183

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
              RR  +  +A + A VL  C  L  L+  KQVHG     G + +++++S+++D Y+K 
Sbjct: 184 RDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKC 243

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G    A  LF E+ V D     T+++ Y+  G +  A  +F  MP K+ +SW+++I G +
Sbjct: 244 GEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYA 303

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           +N    EALD F  M K  +  ++++ +S + ACA+I++L+ G+QV   +       + I
Sbjct: 304 RNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTI 363

Query: 473 ISTSLVDFYCKCGFIK 488
           + +SL+D Y KCG ++
Sbjct: 364 VVSSLIDMYSKCGMLE 379


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 135/417 (32%), Positives = 211/417 (50%), Gaps = 40/417 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++  + K G   ++ ++F+  P  N F++N L+S  A A  L    +LF  M +R+ +
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTV 104

Query: 136 AWNSMIHCYVRNGFAREAVRLFKEL----NSDLVERLQCDAFILATVIGACADLAALEYG 191
           ++N++I  +   G    AVRL+  L    +S    R+   A ++A    A  D A    G
Sbjct: 105 SYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAA--SALGDRA---LG 159

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           +Q H  IL  G   ++ +GS LV +Y K G    A +V + M   +    + +I+G   C
Sbjct: 160 RQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRC 219

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
             + +ARR+F+  TD   + W +M++G+  N  +++AL  F +MR  G+  D  T  S+L
Sbjct: 220 KMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSIL 279

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           +AC +L  LE GKQ+H +  +    D+V V SAL+D YSK                    
Sbjct: 280 TACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSK-------------------- 319

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      C  I+ A+  FR M  K++ISW ++IVG  QNG   EA+ +F  M +  
Sbjct: 320 -----------CRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  D F+L SVIS+CAN++SLE G Q      + GL     +S +LV  Y KCG I+
Sbjct: 369 IDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 198/430 (46%), Gaps = 72/430 (16%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N F  + ++  + K+G    + ++F+ M  KN   +N +I+G  +   ++ AR LF  M 
Sbjct: 174 NAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMT 233

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ I W +M+  + +NG   +A+  F+ +     + +  D +   +++ AC  L+ALE 
Sbjct: 234 DRDCITWTTMVTGFTQNGLESQALNFFRRMR---FQGIAIDQYTFGSILTACGALSALEQ 290

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQIH++I+    D +  +GS+LV++Y K                               
Sbjct: 291 GKQIHAYIIRTHYDDNVFVGSALVDMYSK------------------------------- 319

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           C  +  A   F R +  + + W ++I GY  N    EA+ +F +M+R+G+  D  TL SV
Sbjct: 320 CRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSV 379

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +S+C++L  LE G Q H  A   G++  + V++AL+  Y K G   DA +LF E+  +D 
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +    ++T Y+  GR +                               E +DLF  M   
Sbjct: 440 VSWTALVTGYAQFGRAK-------------------------------ETIDLFEKMLAK 468

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGF 486
           D++ D  +   V+SAC+    +E G   F  +     I+ +D      T ++D Y + G 
Sbjct: 469 DVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHY---TCMIDLYSRSGR 525

Query: 487 IKMDEYYLMQ 496
           +K  E ++ Q
Sbjct: 526 LKEAEEFIKQ 535



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 152/281 (54%), Gaps = 2/281 (0%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+  YGK G    A +V +    P+ F  +AL+S  A+   ++D   +F       +V +
Sbjct: 47  LLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSY 106

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           N++I+G+        A+ L+H + R G  V     T+++++ A S+LG    G+Q H   
Sbjct: 107 NAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQI 166

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            ++G   +  V S L+  Y+K G+  DA ++F E+   + ++ NTMIT    C  +E+A+
Sbjct: 167 LRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEAR 226

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M ++  I+W +M+ G +QNG   +AL+ F  M    + +D+++  S+++AC  +S
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +LE G+Q+ A +     D +  + ++LVD Y KC  IK  E
Sbjct: 287 ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAE 327



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G+++  + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMH-YITVSNALVTLYGKCGSIEDAHRLFDEM 434

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
              +  SW A++ G+ + G  ++++ LF  M  K    +  ++  ++S  ++AG ++   
Sbjct: 435 LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGC 494

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           + F+ M + + I      +  MI  Y R+G  +EA    K++       +  DA    T+
Sbjct: 495 SYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMP------MHPDAIGWGTL 548

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
           + AC     +E G+        N L+ D    +S V   +++   G++N   Q+   M++
Sbjct: 549 LSACRLRGDMEIGQWAAE----NLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRD 604


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  224 bits (571), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/549 (27%), Positives = 250/549 (45%), Gaps = 111/549 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L SC     +  G+Q+H + +K G   S       L+ MY +C   TDA  +FD  
Sbjct: 163 FAIVLSSCARLEMVKCGRQVHCNVVKMG-FESISYCEGALIGMYAKCNFLTDARSIFDGA 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SW +MI G++K+G  E+++++F  M     + +  ++  +I+ +   G L  A 
Sbjct: 222 VELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNAS 281

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF+ MP RN +AWN MI  + + G+  EA+  F+ +    ++  +     L +V+ A A
Sbjct: 282 DLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRS---TLGSVLSAIA 338

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-------- 235
            LAAL++G  +H+  L  GL  +  +GSSLV++Y KCG   +A +V + + E        
Sbjct: 339 SLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNA 398

Query: 236 ---------------------------PDDFCLSALISG--------------------- 247
                                      PDDF  S+++S                      
Sbjct: 399 MLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNK 458

Query: 248 --------------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                         YA  G + DAR+ F+   +  +V WN +I GY+   ++ EA  LF 
Sbjct: 459 FASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFR 518

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M   G+L D  +LAS+LSAC+S+  LE GKQVH  + K G    +   S+L+D Y+K  
Sbjct: 519 RMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAK-- 576

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        CG I+ A  I   MP +S++S N++I G +Q
Sbjct: 577 -----------------------------CGAIDSAHKILACMPERSVVSMNALIAGYAQ 607

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQI 472
                +A++LF +M    +   + + AS++ AC     L LG Q+ + +  +GL   D+ 
Sbjct: 608 INLE-QAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEF 666

Query: 473 ISTSLVDFY 481
           +  SL+  Y
Sbjct: 667 LGVSLLGMY 675



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 148/521 (28%), Positives = 238/521 (45%), Gaps = 106/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +  +  ++  G  +H   LK+G L+S + + + L+ MY +CG    A  +FD +
Sbjct: 330 LGSVLSAIASLAALDFGLLVHAEALKQG-LHSNVYVGSSLVSMYAKCGKMEAAKKVFDTL 388

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             +N   WNAM+ G+++ G+  + ++LF  M                             
Sbjct: 389 NEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGH 448

Query: 101 -------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN F+ N+     L+  +AK+G L+ AR  F  +  R+ ++WN +I  YV+  
Sbjct: 449 QLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEE 508

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA  LF+ +N   +  +  D   LA+++ ACA +  LE GKQ+H   +  G +    
Sbjct: 509 DEVEAFHLFRRMN---LLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLY 565

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GSSL+++Y KCG  +SA+++L  M E     ++ALI+GYA                   
Sbjct: 566 SGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQI----------------- 608

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                        N E  +A+ LF  M   G+     T AS+L AC     L  G+Q+H 
Sbjct: 609 -------------NLE--QAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHS 653

Query: 329 HACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
              K+G+ +DD  +  +LL  Y      +DA  LFSE                       
Sbjct: 654 LILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEF---------------------- 691

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                  + P KS + W +MI GLSQN   + AL L+  M   ++  D+ +  S + ACA
Sbjct: 692 -------SNP-KSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACA 743

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +SS++ G +  + +   G DSD++ S++LVD Y KCG +K
Sbjct: 744 VVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVK 784



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 221/485 (45%), Gaps = 86/485 (17%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRR-NCFSW-NAMIEG-FMKLGHKEKSLQLFNVMP 99
           I   +LQ  ++         LFDE+P+R + FS  N +I    +KLG   K +       
Sbjct: 43  IYTHILQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSKGVL------ 96

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
                  N+++  +AK  ++  A   F  +  ++ +AWNS++  + + GF    V+ F  
Sbjct: 97  ------GNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGL 150

Query: 160 L-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
           L NS +      + F  A V+ +CA L  ++ G+Q+H +++  G +  S    +L+ +Y 
Sbjct: 151 LWNSGVWP----NEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYA 206

Query: 219 KCGDFNSANQVLN-----------------------------------MMKEPDDFCLSA 243
           KC     A  + +                                   + +EPD      
Sbjct: 207 KCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVT 266

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I+ Y + G++++A  +F R  + + V WN MISG+       EA+  F  MR+ G+   
Sbjct: 267 VINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKST 326

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            STL SVLSA +SL  L+ G  VH  A K G+  +V V S+L+  Y+K            
Sbjct: 327 RSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAK------------ 374

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CG++E AK +F T+  ++++ WN+M+ G  QNG   E ++L
Sbjct: 375 -------------------CGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMEL 415

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F NM       D F+ +S++SACA +  L+LG Q+ + +      S+  +  +LVD Y K
Sbjct: 416 FFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAK 475

Query: 484 CGFIK 488
            G ++
Sbjct: 476 SGALE 480



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 225/528 (42%), Gaps = 108/528 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + +L +C     + +G QLH   + K    S L + N L+ MY + G   DA   F+ + 
Sbjct: 432 SSILSACACLKYLDLGHQLH-SVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIR 490

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMP----------------------- 99
            R+  SWN +I G+++   + ++  LF       ++P                       
Sbjct: 491 NRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQ 550

Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                     +   +S + LI  +AK G + +A  +   MP R+ ++ N++I  Y +   
Sbjct: 551 VHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINL 610

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             +AV LF+++   LVE +       A+++ AC +   L  G+QIHS IL  GL  D   
Sbjct: 611 -EQAVNLFRDM---LVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLD--- 663

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT-S 268
                                      D+F   +L+  Y N  +  DA  +F   ++  S
Sbjct: 664 ---------------------------DEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKS 696

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V+W +MISG   N+    AL L+ +MR   VL D +T  S L AC+ +  ++ G + H 
Sbjct: 697 AVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHS 756

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                G   D + +SAL+D Y+K                               CG ++ 
Sbjct: 757 LIFHTGFDSDELTSSALVDMYAK-------------------------------CGDVKS 785

Query: 389 AKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           +  +F+ M  K  +ISWNSMIVG ++NG   +AL +F  M +  +  D  +   V++AC+
Sbjct: 786 SMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACS 845

Query: 448 NISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           +   +  G  +F   V + G+         +VD   + G +K  E ++
Sbjct: 846 HSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFI 893


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 249/521 (47%), Gaps = 79/521 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++ C        GK +H    + G+    + + N L+  Y +  +   A  +F  M  R
Sbjct: 62  VIEHCAKARRFEDGKMVHKQLDELGV-EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLR 120

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK----------NDFS--------- 105
           +  +W++MI  +    H  K+   F      N+ P +          N++S         
Sbjct: 121 DVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIH 180

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            LI+ ++K GE+  A  +F+ M  RN ++W ++I    ++    
Sbjct: 181 TIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLN 240

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  L++++   L   +  +A    +++ +C    AL  G++IHSHI   GL+ D ++ +
Sbjct: 241 EAFELYEQM---LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVAN 297

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+ +Y K                               C  + +AR +FDR +    + 
Sbjct: 298 ALITMYCK-------------------------------CNSVQEAREIFDRMSKRDVIS 326

Query: 272 WNSMISGYI-SNNEDTEAL----LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           W++MI+GY  S  +D E++     L  +MRR GV  +  T  S+L AC++ G LE G+Q+
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQI 386

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    KVG   D  + +A+ + Y+K G   +A ++FS++   + +   + +++Y  CG +
Sbjct: 387 HAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDL 446

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             A+ +F  MP ++++SWN MI G +QNG  ++  +L  +M     + D+ ++ +++ AC
Sbjct: 447 SSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEAC 506

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             ++ LE G+ V A    +GL+SD +++TSL+  Y KCG +
Sbjct: 507 GALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQV 547



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 238/497 (47%), Gaps = 74/497 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI +L+ +L++CN +  +  G+++H   +K   + + + +A  L+ MY +CG  + A  +
Sbjct: 157 RITFLS-ILKACNNYSILEKGRKIHT-IVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW------------- 106
           F +M  RN  SW A+I+   +     ++ +L+  M Q     N  ++             
Sbjct: 215 FHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEAL 274

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LI+ + K   ++ AR +F+ M +R+ I+W++MI  Y
Sbjct: 275 NRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGY 334

Query: 145 VRNGFA-REAV-RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            ++G+  +E++  +F+ L     E +  +     +++ AC    ALE G+QIH+ +   G
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVG 394

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
            + D  L +++ N+Y KCG    A QV + M   +    ++ +S Y  CG ++ A +VF 
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFS 454

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                + V WN MI+GY  N +  +   L   M+  G   D  T+ ++L AC +L  LE 
Sbjct: 455 EMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER 514

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK VH  A K+G+  D +VA++L+  YSK G  ++A  +F ++   DT+  N        
Sbjct: 515 GKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWN-------- 566

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                                  +M+ G  Q+G  +EA+DLF  M K  +  ++ +L +V
Sbjct: 567 -----------------------AMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAV 603

Query: 443 ISACANISSLELGEQVF 459
           ISAC+    ++ G ++F
Sbjct: 604 ISACSRAGLVQEGREIF 620



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 99/400 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L++C  H ++  G+Q+H    K G  L+ +L  A  +  MY +CG+  +A         
Sbjct: 370 ILRACTAHGALEQGRQIHAELSKVGFELDRSLQTA--IFNMYAKCGSIYEAE-------- 419

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
                                  Q+F+ M  KN  +W   +S + K G+L +A  +F++M
Sbjct: 420 -----------------------QVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM 456

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           P RN ++WN MI  Y +NG   + V++F+ L+S   E  Q D   + T++ AC  LA LE
Sbjct: 457 PTRNVVSWNLMIAGYAQNG---DIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLE 513

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            GK +H+  +  GL+ D+V+ +SL+ +Y K                              
Sbjct: 514 RGKLVHAEAVKLGLESDTVVATSLIGMYSK------------------------------ 543

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CG++ +AR VFD+ ++  +V WN+M++GY  + +  EA+ LF +M +  V  +  TL +
Sbjct: 544 -CGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTA 602

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           V+SACS  G ++ G+++                         R M  D  K+    + Y 
Sbjct: 603 VISACSRAGLVQEGREIF------------------------RMMQED-FKMTPRKQHY- 636

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMI 408
                 M+ +    GR+++A+   ++MP +  IS W++++
Sbjct: 637 ----GCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALL 672



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 150/343 (43%), Gaps = 65/343 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           + G  REA++L   +       L  ++     VI  CA     E GK +H  +   G++ 
Sbjct: 33  KAGRLREAIQLLGIIKQ---RGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEI 89

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  LG+SL+N Y K  D  SA QV                               F R T
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQV-------------------------------FRRMT 118

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V W+SMI+ Y  NN   +A   F +M    +  +  T  S+L AC++   LE G++
Sbjct: 119 LRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRK 178

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H     +G+  DV VA+AL                               IT+YS CG 
Sbjct: 179 IHTIVKAMGMETDVAVATAL-------------------------------ITMYSKCGE 207

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           I  A  +F  M  ++++SW ++I   +Q+    EA +L+  M +  +  +  +  S++++
Sbjct: 208 ISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           C    +L  G ++ + ++  GL++D I++ +L+  YCKC  ++
Sbjct: 268 CNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQ 310



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 41/243 (16%)

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           G+A+ GK  D       T+ +   +W    +G +      EA+ L   +++ G+L +++T
Sbjct: 9   GFASTGKELDGP-----TSVSGGEVWRLCKAGRLR-----EAIQLLGIIKQRGLLVNSNT 58

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
              V+  C+     E GK VH    ++GV                            E+ 
Sbjct: 59  YGCVIEHCAKARRFEDGKMVHKQLDELGV----------------------------EID 90

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
           +Y   L N++I  YS    +  A+ +FR M  + +++W+SMI   + N  P +A D F  
Sbjct: 91  IY---LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 147

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M   ++  ++ +  S++ AC N S LE G ++   V  +G+++D  ++T+L+  Y KCG 
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGE 207

Query: 487 IKM 489
           I +
Sbjct: 208 ISV 210



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 116/236 (49%), Gaps = 25/236 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  GK +H   +K G+ + T+ +A  L+ MY +CG   +A  +FD+M  R
Sbjct: 502 ILEACGALAGLERGKLVHAEAVKLGLESDTV-VATSLIGMYSKCGQVAEARTVFDKMSNR 560

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           +  +WNAM+ G+ + G   +++ LF  M ++    N+ +   +IS  ++AG ++  R +F
Sbjct: 561 DTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIF 620

Query: 127 NDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILAT 177
             M       PR+    +  M+    R G  +EA         + ++ + C  D  +   
Sbjct: 621 RMMQEDFKMTPRKQ--HYGCMVDLLGRAGRLQEA--------EEFIQSMPCEPDISVWHA 670

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           ++GAC     ++  ++   HIL     + SV   +L N+Y + G ++ + +V  +M
Sbjct: 671 LLGACKSHNNVQLAERAAHHILELEPSYASVY-ITLSNIYAQAGRWDDSTKVRRVM 725


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 219/426 (51%), Gaps = 69/426 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N ++  + K G    +  LF+ M +++ FSWN L+S +AK+G ++  +  F+ MP R
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFR 118

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +++++N+ I  +  N   +E++ LFK +  +  E  +   + + +++ A A L+ L YGK
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE---YTIVSILNASAQLSDLRYGK 175

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----------------- 235
           QIH  I+V     +  + ++L ++Y KCG+   A  + + + +                 
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 236 ------------------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                             PD   +S +I+ Y  CG++++ARRVF    +   V W +M+ 
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMV 295

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  N  + +ALLLF++M    +  D+ TL+SV+S+C+ L  L HG+ VHG +   G+ +
Sbjct: 296 GYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN 355

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           +++V+SAL+D YSK G   D                               A+ +F  MP
Sbjct: 356 NLLVSSALIDMYSKCGFIDD-------------------------------ARSVFNLMP 384

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            ++++SWN+MIVG +QNG   +AL+LF NM +   + D  +   ++SAC + + +E G++
Sbjct: 385 TRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444

Query: 458 VFARVT 463
            F  +T
Sbjct: 445 YFDSIT 450



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 175/342 (51%), Gaps = 36/342 (10%)

Query: 182 CADLAALEYGKQIHSHILVNGLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           C     +   K++ SH+  +     DS L + L++LY K G    A  + + M + D F 
Sbjct: 32  CVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFS 91

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +AL+S YA  G + + +  FDR     SV +N+ I+G+  N+   E+L LF +M+R G 
Sbjct: 92  WNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGF 151

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK--------- 351
                T+ S+L+A + L  L +GKQ+HG       + +V + +AL D Y+K         
Sbjct: 152 EPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 352 ----------------------RGMPSDACKLFSELKVY----DTILLNTMITVYSSCGR 385
                                  G P     L  ++++     D + ++T+I  Y  CGR
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGR 271

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +++A+ +F     K ++ W +M+VG ++NG   +AL LF  M    +  D ++L+SV+S+
Sbjct: 272 VDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSS 331

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           CA ++SL  G+ V  +  + GL+++ ++S++L+D Y KCGFI
Sbjct: 332 CAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFI 373



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 80/155 (51%)

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D  + + LL  Y+K G   DA  LF ++   D    N +++ Y+  G I++ K  F  MP
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            +  +S+N+ I G S N  P E+L+LF  M +      ++++ S+++A A +S L  G+Q
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +   + +     +  I  +L D Y KCG I+   +
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 58/280 (20%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ 100
           ++  Y +CG   +A  +F E   ++   W AM+ G+ K G +E +L LFN M      P 
Sbjct: 262 IIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPD 321

Query: 101 KNDFSW----------------------------NMLISG-----FAKAGELKTARTLFN 127
               S                             N+L+S      ++K G +  AR++FN
Sbjct: 322 SYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFN 381

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP RN ++WN+MI    +NG  ++A+ LF+ +   L ++ + D      ++ AC     
Sbjct: 382 LMPTRNVVSWNAMIVGCAQNGHDKDALELFENM---LQQKFKPDNVTFIGILSACLHCNW 438

Query: 188 LEYGKQ-----IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCL 241
           +E G++      + H +   LD  + +    VNL G+ G    A  ++ NM  +PD    
Sbjct: 439 IEQGQEYFDSITNQHGMTPTLDHYACM----VNLLGRTGRIEQAVALIKNMAHDPDFLIW 494

Query: 242 SALISGYANCGKMND----ARRVF--DRTTDTSSVMWNSM 275
           S L+S  +  G + +    AR +F  D T     +M ++M
Sbjct: 495 STLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNM 534



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 23/242 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ SC    S+H G+ +H   +  G LN+ L +++ L+ MY +CG   DA  +F+ M
Sbjct: 325 LSSVVSSCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQK---NDFSWNMLISGFAKAGELKTAR 123
           P RN  SWNAMI G  + GH + +L+LF N++ QK   ++ ++  ++S       ++  +
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ +  ++ +      +  M++   R G   +AV L K +  D       D  I +T+
Sbjct: 444 EYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDP------DFLIWSTL 497

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
           +  C+    +   +    H+     + D  +      L N+Y   G +     V N+MK 
Sbjct: 498 LSICSTKGDIVNAEVAARHL----FELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKS 553

Query: 236 PD 237
            +
Sbjct: 554 KN 555


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 231/482 (47%), Gaps = 68/482 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C        GK +HLH    G    T  +AN L+ MY  CG   +A  +FD+M  R
Sbjct: 68  LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVR 127

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N +SWN M+ G+ KLG    + +LF+ M +K+  SWN ++  +AK G    A  L+ D  
Sbjct: 128 NLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFR 187

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R +              GF                     +AF  A V+  C  L  L+ 
Sbjct: 188 RLDM-------------GF---------------------NAFSFAGVLILCVKLKELQL 213

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            KQ+H  +LV G   + VL SS+V+ Y KCG+   A  + + M   D    + ++SGYA 
Sbjct: 214 AKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAK 273

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G MN A  +F +  + + V W+++ISGY  N+   EAL  F KM + G+  +  T +S 
Sbjct: 274 WGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSC 333

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYD 369
           L AC+S+  L+HGKQVHG+  +     + IV S+L+D YSK GM   +C +F  +    D
Sbjct: 334 LCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQD 393

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            ++ NTMI+                                L+QNG   +A+ +F +M +
Sbjct: 394 VVVWNTMIS-------------------------------ALAQNGHGEKAMQMFNDMVE 422

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG-FI 487
             L+ D+ +   ++SAC++   ++ G + F  +T   G+  DQ     L+D   + G F+
Sbjct: 423 SGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFV 482

Query: 488 KM 489
           ++
Sbjct: 483 EL 484



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 172/316 (54%), Gaps = 1/316 (0%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVLNM 232
           I   ++  CA     + GK +H H+   G    + ++ + L+ +Y +CG    A +V + 
Sbjct: 64  IFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDK 123

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           M   + +  + +++GYA  G +N+AR++FDR  +   V WN+++  Y       EA+ L+
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLY 183

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
              RR  +  +A + A VL  C  L  L+  KQVHG     G + +++++S+++D YSK 
Sbjct: 184 RDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKC 243

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G    A  LF E+ V D     T+++ Y+  G +  A  +F  MP K+ +SW+++I G +
Sbjct: 244 GEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYA 303

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           +N    EALD F  M K  +  ++++ +S + ACA+I++L+ G+QV   +       + I
Sbjct: 304 RNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTI 363

Query: 473 ISTSLVDFYCKCGFIK 488
           + +SL+D Y KCG ++
Sbjct: 364 VVSSLIDMYSKCGMLE 379


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/486 (30%), Positives = 248/486 (51%), Gaps = 37/486 (7%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D    LLQS        +G+ +H   +K G+    + + N LL +Y++ G+ +DA     
Sbjct: 13  DACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDA----- 67

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                                H+     LF+ MP K  FSWN ++S  AKAG L +AR +
Sbjct: 68  ---------------------HR-----LFDEMPLKTTFSWNTILSAHAKAGNLDSARRV 101

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+++P+ ++++W +MI  Y   G  + AV  F  + S  +   Q   F    V+ +CA  
Sbjct: 102 FDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQ---FTFTNVLASCAAA 158

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            AL+ GK++HS ++  G      + +SL+N+Y KCGD   A  V + M+  D    + +I
Sbjct: 159 QALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMI 218

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DA 304
           S +    + + A  +FD+ TD   V WNS+I+GY     D  AL  F  M ++  L+ D 
Sbjct: 219 SMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDK 278

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL--F 362
            TL SVLSAC++   L+ GKQ+H H  +  V     V +AL+  Y+K G    A ++   
Sbjct: 279 FTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEI 338

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           +     + I   +++  Y   G I+ A+ IF ++ ++ +++W +MIVG +QNG   +AL 
Sbjct: 339 TGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALV 398

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           LF  M +   + + ++LA+V+S  ++++SL+ G+Q+ A    +   S   +  +L+  Y 
Sbjct: 399 LFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYS 458

Query: 483 KCGFIK 488
           + G IK
Sbjct: 459 RSGSIK 464



 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 134/451 (29%), Positives = 222/451 (49%), Gaps = 66/451 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L SC    ++ VGK++H   +K G  +  +P+AN LL MY +CG+   A ++FD M   
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLG-QSGVVPVANSLLNMYAKCGDSVMAKVVFDRMR-- 207

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                         K+  +WN +IS   +  +   A  LF+ M 
Sbjct: 208 -----------------------------LKDTSTWNTMISMHMQFCQFDLALALFDQMT 238

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             + ++WNS+I  Y   G+   A+  F  +       L+ D F L +V+ ACA+  +L+ 
Sbjct: 239 DPDIVSWNSIITGYCHQGYDIRALETFSFMLKS--SSLKPDKFTLGSVLSACANRESLKL 296

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--DDFCLSALISGY 248
           GKQIH+HI+   +D    +G++L+++Y K G    A++++ +   P  +    ++L+ GY
Sbjct: 297 GKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY 356

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
              G ++ AR +FD       V W +MI GY  N   ++AL+LF  M R G   +  TLA
Sbjct: 357 FKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLA 416

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           +VLS  SSL  L+HGKQ+H  A ++  +  V V +AL+  YS+ G   DA K+F+ +  Y
Sbjct: 417 AVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSY 476

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                                         +  ++W SMI+ L+Q+G   EA++LF  M 
Sbjct: 477 ------------------------------RDTLTWTSMILSLAQHGLGNEAIELFEKML 506

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVF 459
           +++L+ D  +   V+SAC ++  +E G+  F
Sbjct: 507 RINLKPDHITYVGVLSACTHVGLVEQGKSYF 537



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 191 GKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
           G+ IH+ I+ +GL +  V L ++L+NLY K G  + A+++ + M     F  + ++S +A
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             G ++ ARRVFD      SV W +MI GY        A+  F +M  +G+     T  +
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL++C++   L+ GK+VH    K+G    V VA++LL+ Y+K G    A  +F  +++ D
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T   NTMI+++    + + A  +F  M +  ++SWNS+I G    G  I AL+ F  M K
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 430 -LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              L+ DKF+L SV+SACAN  SL+LG+Q+ A +    +D    +  +L+  Y K G ++
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330

Query: 489 M 489
           +
Sbjct: 331 V 331



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 210/502 (41%), Gaps = 118/502 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    S+ +GKQ+H H ++  + +    + N L+ MY + G            
Sbjct: 281 LGSVLSACANRESLKLGKQIHAHIVRADV-DIAGAVGNALISMYAKSGA----------- 328

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                          +++ H+   +      P  N  ++  L+ G+ K G++  AR +F+
Sbjct: 329 ---------------VEVAHR---IVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFD 370

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  R+ +AW +MI  Y +NG   +A+ LF+ +   + E  + + + LA V+   + LA+
Sbjct: 371 SLKHRDVVAWTAMIVGYAQNGLISDALVLFRLM---IREGPKPNNYTLAAVLSVISSLAS 427

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L++GKQ+H+      +  + V   S+ N                           ALI+ 
Sbjct: 428 LDHGKQLHA----VAIRLEEVSSVSVGN---------------------------ALITM 456

Query: 248 YANCGKMNDARRVFDRT-TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           Y+  G + DAR++F+   +   ++ W SMI     +    EA+ LF KM R  +  D  T
Sbjct: 457 YSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHIT 516

Query: 307 LASVLSACSSLGFLEHGKQ-------VHG-------HACKVGVIDDVIVASALLDTYS-K 351
              VLSAC+ +G +E GK        VH        +AC   +ID +  A  L + Y+  
Sbjct: 517 YVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYAC---MIDLLGRAGLLEEAYNFI 573

Query: 352 RGMPSDA-----CKLFSELKVYDTILLN-------------------TMITVYSSCGRIE 387
           R MP +        L S  +V+  + L                     +    S+CG+ E
Sbjct: 574 RNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWE 633

Query: 388 DAKHIFRTMPNKSL-----ISWNSM-----IVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           DA  + ++M +K++      SW  +     I G+     P +   ++C ++K+   + K 
Sbjct: 634 DAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHP-QRDAIYCMISKIWKEIKKM 692

Query: 438 SLASVISACANISSLELGEQVF 459
                 ++  +    E+ EQ+ 
Sbjct: 693 GFIPDTNSVLHDLEQEVKEQIL 714


>gi|357139571|ref|XP_003571354.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/480 (29%), Positives = 220/480 (45%), Gaps = 73/480 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y R G   DA  LFD MPRR+  SW A++  +   G    +  +F+ MP++N  
Sbjct: 46  NALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFDDMPRRNAA 105

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN L+S + +AG+   A  LF+ MP RNA+++ +MI    R G  REA  +F E+    
Sbjct: 106 SWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEMPWRW 165

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            + +  +A I A                                        Y + G+ +
Sbjct: 166 RDPVGSNALIAA----------------------------------------YVRAGELS 185

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V   M   D    +A++ G    G + +AR+VF+   + + V W SMI GY+    
Sbjct: 186 LALRVFEGMAVRDVISWTAVVDGLCKNGSVLEARKVFEAMPERNVVSWTSMILGYVKLGR 245

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             + LLLF  MRR GV  + +TL+  L AC+    +  G Q+HG    +G   DV +  +
Sbjct: 246 RRDGLLLFQNMRREGVQVNTTTLSVALDACAESSLVREGIQIHGLIIAMGFEMDVFLGDS 305

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YS+ G   DA ++F+ +   D +  N++IT Y     +E+A  +F+ MP K  +SW
Sbjct: 306 LITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQHNMVEEAHVLFKLMPEKDAVSW 365

Query: 405 NSMIVGLSQNGSPIEALDL-------------------------------FCNMNKLDLR 433
            SM+VG +  G   EA++L                               FC M +   +
Sbjct: 366 TSMVVGFANRGWITEAIELFEQMPGKDEVAWTAVISSLVTNGDYLSAVRWFCRMAQEGCK 425

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
            +  + + ++SA A+++ L  G Q  A    +G   D  I TSLV  Y KCG  ++ E Y
Sbjct: 426 PNTIAFSCLLSALASLTMLNQGMQAHAYAINMGWIFDSSIHTSLVSMYAKCG--RLAEAY 483



 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 226/478 (47%), Gaps = 39/478 (8%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG----------------------- 81
           N LL +Y+R G P  A  LF +MP RN  S+ AMI G                       
Sbjct: 108 NALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEMPWRWRD 167

Query: 82  ----------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                     +++ G    +L++F  M  ++  SW  ++ G  K G +  AR +F  MP 
Sbjct: 168 PVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVLEARKVFEAMPE 227

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           RN ++W SMI  YV+ G  R+ + LF+ +     E +Q +   L+  + ACA+ + +  G
Sbjct: 228 RNVVSWTSMILGYVKLGRRRDGLLLFQNMRR---EGVQVNTTTLSVALDACAESSLVREG 284

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
            QIH  I+  G + D  LG SL+ LY + G    A +V   M   D    ++LI+GY   
Sbjct: 285 IQIHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQH 344

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
             + +A  +F    +  +V W SM+ G+ +    TEA+ LF +M     +   + ++S++
Sbjct: 345 NMVEEAHVLFKLMPEKDAVSWTSMVVGFANRGWITEAIELFEQMPGKDEVAWTAVISSLV 404

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD-TYSKRGMPSDACKLFSELKVYDT 370
           +    L  +    ++    CK   I    + SAL   T   +GM + A  + +   ++D+
Sbjct: 405 TNGDYLSAVRWFCRMAQEGCKPNTIAFSCLLSALASLTMLNQGMQAHAYAI-NMGWIFDS 463

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            +  +++++Y+ CGR+ +A H+F ++ N SLI+ NSMI    Q+    +A  LF  M   
Sbjct: 464 SIHTSLVSMYAKCGRLAEAYHVFSSISNPSLIATNSMITAFVQHDLVEDAFKLFTKMQND 523

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
             + +  +   +++ CA    ++ G   F  + ++ G++ +    T +VD   + G +
Sbjct: 524 GHKPNHVTFLGILTGCARAGLVQQGYNYFGSMKSVYGIEPNPDHYTCMVDLLGRAGLL 581



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 36/363 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C     +  G Q+H   +  G       + + L+ +Y R G   DA  +F  M
Sbjct: 268 LSVALDACAESSLVREGIQIHGLIIAMGFEMDVF-LGDSLITLYSRFGWMVDARRVFAYM 326

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SWN++I G+++    E++  LF +MP+K+  SW  ++ GFA  G +  A  LF 
Sbjct: 327 TWKDVVSWNSLITGYVQHNMVEEAHVLFKLMPEKDAVSWTSMVVGFANRGWITEAIELFE 386

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ +AW ++I   V NG    AVR F  +     E  + +    + ++ A A L  
Sbjct: 387 QMPGKDEVAWTAVISSLVTNGDYLSAVRWFCRMAQ---EGCKPNTIAFSCLLSALASLTM 443

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G Q H++ +  G  FDS + +SLV++Y KCG                          
Sbjct: 444 LNQGMQAHAYAINMGWIFDSSIHTSLVSMYAKCG-------------------------- 477

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                ++ +A  VF   ++ S +  NSMI+ ++ ++   +A  LF KM+ +G   +  T 
Sbjct: 478 -----RLAEAYHVFSSISNPSLIATNSMITAFVQHDLVEDAFKLFTKMQNDGHKPNHVTF 532

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             +L+ C+  G ++ G    G    V G+  +    + ++D   + G+ ++A ++ + + 
Sbjct: 533 LGILTGCARAGLVQQGYNYFGSMKSVYGIEPNPDHYTCMVDLLGRAGLLAEALEMINSMP 592

Query: 367 VYD 369
             D
Sbjct: 593 QND 595



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 29/140 (20%)

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK--- 429
           LN ++T Y   G + DA+ +F  MP + +ISW +++   + NG P  A  +F +M +   
Sbjct: 45  LNALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFDDMPRRNA 104

Query: 430 --------LDLRMDK----------------FSLASVISACANISSLELGEQVFARVTII 465
                   L LR  +                 S  ++IS  A    L   E VFA +   
Sbjct: 105 ASWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEMPWR 164

Query: 466 GLDSDQIISTSLVDFYCKCG 485
               D + S +L+  Y + G
Sbjct: 165 W--RDPVGSNALIAAYVRAG 182



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 16/167 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           LL +  +   ++ G Q H + +  G I +S+  I   L+ MY +CG   +A  +F  +  
Sbjct: 434 LLSALASLTMLNQGMQAHAYAINMGWIFDSS--IHTSLVSMYAKCGRLAEAYHVFSSISN 491

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTL 125
            +  + N+MI  F++    E + +LF  M     + N  ++  +++G A+AG ++     
Sbjct: 492 PSLIATNSMITAFVQHDLVEDAFKLFTKMQNDGHKPNHVTFLGILTGCARAGLVQQGYNY 551

Query: 126 FNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKEL----NSD 163
           F  M     I  N      M+    R G   EA+ +   +    NSD
Sbjct: 552 FGSMKSVYGIEPNPDHYTCMVDLLGRAGLLAEALEMINSMPQNDNSD 598


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/539 (28%), Positives = 251/539 (46%), Gaps = 100/539 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC    S  +GKQLH H +K G  N+   +  +LLQMY R  +  +A  +FD MP
Sbjct: 55  ASILDSCG---SPILGKQLHAHSIKSG-FNAHEFVTTKLLQMYARNCSFENACHVFDTMP 110

Query: 69  RRNCFSWNAMIEGF---------------------------------------------- 82
            RN  SW A++  +                                              
Sbjct: 111 LRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELG 170

Query: 83  -----MKLGHK---EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR--- 131
                M L H    + + ++F+   +K+  S+N +I+G+ + G L  A+ LF+ M +   
Sbjct: 171 RQMHGMALKHDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGV 230

Query: 132 -RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ I+WNSMI  YV      EA  LF++L   L E ++ D+F L +V+  CAD+A++  
Sbjct: 231 QKDRISWNSMISGYVDGSLFDEAYSLFRDL---LKEGIEPDSFTLGSVLAGCADMASIRR 287

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK+ HS  +V GL  +S++G +LV +Y KC D  +A    + + E D    +ALISGYA 
Sbjct: 288 GKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYAR 347

Query: 251 CGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           C +    R +  +      + +   WN +I+GY+ N +   A+ LF +M+   +  D  T
Sbjct: 348 CNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYT 407

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +  +L+ACS L  ++ GKQVH ++ + G   DV + +AL+D Y+K               
Sbjct: 408 VGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAK--------------- 452

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                           CG ++    ++  + N +L+S N+M+   + +G   E + LF  
Sbjct: 453 ----------------CGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRR 496

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           M    +R D  +  +V+S+C +  SLE+G +  A +    +       T +VD   + G
Sbjct: 497 MLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAG 555



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 196/397 (49%), Gaps = 31/397 (7%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           ++F    L+  +A+    + A  +F+ MP RN  +W +++  Y+  GF  EA  LF++L 
Sbjct: 82  HEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLL 141

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            + V R++ D F+   V+  C  L A+E G+Q+H   L +                   G
Sbjct: 142 YEGV-RVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHD------------------G 182

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSMIS 277
           D  SA ++ +          +A+I+GY   G +  A+ +FDR          + WNSMIS
Sbjct: 183 DMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMIS 242

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY+  +   EA  LF  + + G+  D+ TL SVL+ C+ +  +  GK+ H  A   G+  
Sbjct: 243 GYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQS 302

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM- 396
           + IV  AL++ YSK      A   F  +   D    N +I+ Y+ C + E  + + + M 
Sbjct: 303 NSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMR 362

Query: 397 -----PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                PN  + +WN +I G  +N     A+ LF  M   +LR D +++  +++AC+ +++
Sbjct: 363 RDGFEPN--VYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLAT 420

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ G+QV A     G DSD  I  +LVD Y KCG +K
Sbjct: 421 IQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVK 457



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 176/408 (43%), Gaps = 102/408 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    SI  GK+ H   + +G+ ++++ +   L++MY +C +   A + FD +
Sbjct: 272 LGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSI-VGGALVEMYSKCQDIVAAQMAFDGV 330

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  +WNA                               LISG+A+  + +  R L  
Sbjct: 331 SERDLPTWNA-------------------------------LISGYARCNQAEKIRELHQ 359

Query: 128 DMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            M R     N   WN +I  YV N     A++LF E+    +  L+ D + +  ++ AC+
Sbjct: 360 KMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQ---IANLRPDIYTVGIILAACS 416

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            LA ++ GKQ+H++ +  G D D  +G++LV++                           
Sbjct: 417 RLATIQRGKQVHAYSIRAGHDSDVHIGAALVDM--------------------------- 449

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
               YA CG +    RV++  ++ + V  N+M++ Y  +    E + LF +M  + V  D
Sbjct: 450 ----YAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPD 505

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  +VLS+C   G LE      GH C            AL+  Y+   MPS       
Sbjct: 506 HVTFLAVLSSCVHAGSLE-----IGHECL-----------ALMVAYNV--MPS------- 540

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVG 410
            LK Y       M+ + S  G++ +A  + + +P ++  ++WN+++ G
Sbjct: 541 -LKHY-----TCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGG 582



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   +I  GKQ+H + ++ G  +S + I   L+ MY +CG+      +++ +   
Sbjct: 411 ILAACSRLATIQRGKQVHAYSIRAG-HDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNP 469

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           N  S NAM+  +   GH E+ + LF  M     + +  ++  ++S    AG L+      
Sbjct: 470 NLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECL 529

Query: 127 NDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             M   N +     +  M+    R G   EA  L K L +      + DA     ++G C
Sbjct: 530 ALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPT------EADAVTWNALLGGC 583

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                ++ G +I +  L+     +      L NLY   G ++   Q   +MK+
Sbjct: 584 FIHNEVDLG-EIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKD 635



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 111/294 (37%), Gaps = 78/294 (26%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR----RNCFSWNAMIEGFMKLGHKEK 90
           G+    LP  N L+  Y RC        L  +M R     N ++WN +I G+++    + 
Sbjct: 329 GVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDS 388

Query: 91  SLQLF------NVMP----------------------QKNDFSWNM-----------LIS 111
           ++QLF      N+ P                      Q + +S              L+ 
Sbjct: 389 AMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVD 448

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
            +AK G++K    ++N +   N ++ N+M+  Y  +G   E + LF+ +   L  +++ D
Sbjct: 449 MYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRM---LASKVRPD 505

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
                 V+ +C    +LE G +                          C     A  V+ 
Sbjct: 506 HVTFLAVLSSCVHAGSLEIGHE--------------------------CLALMVAYNVMP 539

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDR-TTDTSSVMWNSMISGYISNNE 284
            +K     C+  L+S     G++ +A  +     T+  +V WN+++ G   +NE
Sbjct: 540 SLKHYT--CMVDLLS---RAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNE 588


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 242/522 (46%), Gaps = 106/522 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           DY+ +LLQSC     + VGKQ+H H L+ G +   + I N LL++Y+ CG+  +A  LFD
Sbjct: 46  DYV-KLLQSCVKAKDLAVGKQVHEHILRFG-MKPNVYIINTLLKLYVHCGSVNEARRLFD 103

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW 106
           +   ++  SWN MI G+   G  +++  LF +M Q+                      +W
Sbjct: 104 KFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNW 163

Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N LIS +AK G ++ AR +F+ M  R+ ++W ++   Y  
Sbjct: 164 GREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAE 223

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G+A+E+++ +  +   L E ++        V+ AC  LAALE GKQIH+ I+ +    D
Sbjct: 224 SGYAQESLKTYHAM---LQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSD 280

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + ++L  +Y KC                               G + DAR VF+   +
Sbjct: 281 VRVSTALTKMYIKC-------------------------------GAVKDAREVFECLPN 309

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              + WN+MI G + + +  EA  +FH+M +  V  D  T  ++LSAC+  G L  GK++
Sbjct: 310 RDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEI 369

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  A K G++ DV   +AL++ YSK G   DA ++F  +   D +    ++  Y+ CG++
Sbjct: 370 HARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQV 429

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                                          +E+   F  M +  +  +K +   V+ AC
Sbjct: 430 -------------------------------VESFSTFKKMLQQGVEANKITYMCVLKAC 458

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +N  +L+ G+++ A V   G+ +D  ++ +L+  Y KCG ++
Sbjct: 459 SNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVE 500



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 216/489 (44%), Gaps = 105/489 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++  +++ G+++H+  ++ G+ N+   + N L+ MY +CG+  DA  +FD M  R
Sbjct: 151 ILSACSSPAALNWGREVHVRVMEAGLANNAT-VGNALISMYAKCGSVRDARRVFDAMASR 209

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG-------------- 112
           +  SW  +   + + G+ ++SL+ ++ M Q+    +  ++  ++S               
Sbjct: 210 DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIH 269

Query: 113 ---------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                + K G +K AR +F  +P R+ IAWN+MI   V +G   
Sbjct: 270 AQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLE 329

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  +F  +   L E +  D      ++ ACA    L  GK+IH+  + +GL  D   G+
Sbjct: 330 EAHGMFHRM---LKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGN 386

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+N+Y K G                                M DAR+VFDR      V 
Sbjct: 387 ALINMYSKAGS-------------------------------MKDARQVFDRMPKRDVVS 415

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +++ GY    +  E+   F KM + GV  +  T   VL ACS+   L+ GK++H    
Sbjct: 416 WTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVV 475

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  D+ VA+AL+  Y K G   DA ++   +   D +  NT+I              
Sbjct: 476 KAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIG------------- 522

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             GL+QNG  +EAL  F  M   ++R +  +  +V+SAC   + 
Sbjct: 523 ------------------GLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNL 564

Query: 452 LELGEQVFA 460
           +E G + FA
Sbjct: 565 VEEGRRQFA 573



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 144/320 (45%), Gaps = 62/320 (19%)

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           Q D++    ++ +C     L  GKQ+H HIL  G+  +  + ++L+ LY  CG  N A +
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARR 100

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           +       D F   +++S                         WN MISGY       EA
Sbjct: 101 LF------DKFSNKSVVS-------------------------WNVMISGYAHRGLGQEA 129

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             LF  M++ G+  D  T  S+LSACSS   L  G++VH    + G+ ++  V +AL+  
Sbjct: 130 FNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISM 189

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K G   DA ++F                                 M ++  +SW ++ 
Sbjct: 190 YAKCGSVRDARRVFD-------------------------------AMASRDEVSWTTLT 218

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
              +++G   E+L  +  M +  +R  + +  +V+SAC ++++LE G+Q+ A++      
Sbjct: 219 GAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHH 278

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           SD  +ST+L   Y KCG +K
Sbjct: 279 SDVRVSTALTKMYIKCGAVK 298



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 31/198 (15%)

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +   + + G   D+     +L +C     L  GKQVH H  + G+  +V +         
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYI--------- 81

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                                 +NT++ +Y  CG + +A+ +F    NKS++SWN MI G
Sbjct: 82  ----------------------INTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISG 119

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            +  G   EA +LF  M +  L  DKF+  S++SAC++ ++L  G +V  RV   GL ++
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 471 QIISTSLVDFYCKCGFIK 488
             +  +L+  Y KCG ++
Sbjct: 180 ATVGNALISMYAKCGSVR 197


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/524 (28%), Positives = 240/524 (45%), Gaps = 106/524 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R  YL+ +L +C+T  ++  G+ +H H  + G  +S + I N L+ MY RCG+   A  L
Sbjct: 385 RTTYLS-VLNACSTSKALGAGELIHSHISEVG-HSSDVQIGNSLISMYARCGDLPRAREL 442

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMP------------------ 99
           F+ MP+R+  SWNA+I G+ +   +       K +Q   V P                  
Sbjct: 443 FNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAY 502

Query: 100 ---------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                          + N    N L++ + + G +  A+ +F     R+ I+WNSMI  +
Sbjct: 503 SDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGH 562

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            ++G    A +LF E+     E L+ D    A+V+  C +  ALE G+QIH  I+ +GL 
Sbjct: 563 AQHGSYEAAYKLFLEMKK---EGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQ 619

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D  LG++L+N+Y +                               CG + DA  VF   
Sbjct: 620 LDVNLGNALINMYIR-------------------------------CGSLQDAYEVFHSL 648

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
              + + W +MI G+    ED +A  LF +M+ +G     ST +S+L AC S   L+ GK
Sbjct: 649 RHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGK 708

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +V  H    G                             EL   DT + N +I+ YS  G
Sbjct: 709 KVIAHILNSGY----------------------------EL---DTGVGNALISAYSKSG 737

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            + DA+ +F  MPN+ ++SWN MI G +QNG    AL     M +  + ++KFS  S+++
Sbjct: 738 SMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILN 797

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           AC++ S+LE G++V A +    +  D  +  +L+  Y KCG ++
Sbjct: 798 ACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLE 841



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/591 (24%), Positives = 260/591 (43%), Gaps = 145/591 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q+C    S+   K++H   ++ G+    + ++N L+ MY++C + +DA  +F +MPRR
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGV-GPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRR 146

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------------- 99
           +  SWN++I  + + G K+K+ QLF  M                                
Sbjct: 147 DVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIH 206

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   Q++    N L++ + K  +L +AR +F+ + RR+ +++N+M+  Y +  +  
Sbjct: 207 SKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVE 266

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E + LF +++S   E +  D      ++ A    + L+ GK+IH   +  GL+ D  +G+
Sbjct: 267 ECIGLFGQMSS---EGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGT 323

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                          AL + +  CG +  A++  +   D   V+
Sbjct: 324 -------------------------------ALATMFVRCGDVAGAKQALEAFADRDVVV 352

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           +N++I+    +    EA   +++MR +GV+ + +T  SVL+ACS+   L  G+ +H H  
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHIS 412

Query: 332 KVGVIDDVIVASALLDT-------------------------------YSKRGMPSDACK 360
           +VG   DV + ++L+                                 Y++R    +A K
Sbjct: 413 EVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMK 472

Query: 361 LFSELK-----------------------------VYDTIL----------LNTMITVYS 381
           L+ +++                             +++ IL           N ++ +Y 
Sbjct: 473 LYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYR 532

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG I +A+++F     + +ISWNSMI G +Q+GS   A  LF  M K  L  DK + AS
Sbjct: 533 RCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFAS 592

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           V+  C N  +LELG Q+   +   GL  D  +  +L++ Y +CG ++ D Y
Sbjct: 593 VLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQ-DAY 642



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 232/523 (44%), Gaps = 111/523 (21%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +L  LL +C    +   GK +H   L+ GI  S   +AN L+ MY RCG+  +A  +
Sbjct: 486 RVTFL-HLLSACTNSSAYSDGKMIHEDILRSGI-KSNGHLANALMNMYRRCGSIMEAQNV 543

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------ 105
           F+    R+  SWN+MI G  + G  E + +LF  M      P K  F+            
Sbjct: 544 FEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEAL 603

Query: 106 ---------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LI+ + + G L+ A  +F+ +  RN ++W +MI  +
Sbjct: 604 ELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGF 663

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
              G  R+A  LF ++ +D  + ++      ++++ AC   A L+ GK++ +HIL +G +
Sbjct: 664 ADQGEDRKAFELFWQMQNDGFKPVKS---TFSSILKACMSSACLDEGKKVIAHILNSGYE 720

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+ +G+                               ALIS Y+  G M DAR+VFD+ 
Sbjct: 721 LDTGVGN-------------------------------ALISAYSKSGSMTDARKVFDKM 749

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            +   + WN MI+GY  N     AL   ++M+  GV+ +  +  S+L+ACSS   LE GK
Sbjct: 750 PNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGK 809

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +VH    K  +  DV V +AL+  Y+K G   +A ++F      + +  N MI  Y    
Sbjct: 810 RVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAY---- 865

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                      +Q+G   +ALD F  M+K  ++ D  +  S++S
Sbjct: 866 ---------------------------AQHGLASKALDFFNCMDKEGIKPDGSTFTSILS 898

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           AC +   +  G ++F+      L+S   +S ++  + C  G +
Sbjct: 899 ACNHSGLVMEGNRIFS-----SLESQHGLSPTIEHYGCLVGLL 936



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/513 (25%), Positives = 224/513 (43%), Gaps = 119/513 (23%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             A +L  C    ++ +G+Q+H+  ++ G L   + + N L+ MY+RCG+  DA  +F  +
Sbjct: 590  FASVLVGCKNPEALELGRQIHMLIIESG-LQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS---------------- 105
              RN  SW AMI GF   G   K+ +LF  M      P K+ FS                
Sbjct: 649  RHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGK 708

Query: 106  -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                              N LIS ++K+G +  AR +F+ MP R+ ++WN MI  Y +NG
Sbjct: 709  KVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNG 768

Query: 149  FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
                A++   ++    V     + F   +++ AC+  +ALE GK++H+ I+   +  D  
Sbjct: 769  LGGTALQFAYQMQEQGV---VLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVR 825

Query: 209  LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            +G+                               ALIS YA CG + +A+ VFD  T+ +
Sbjct: 826  VGA-------------------------------ALISMYAKCGSLEEAQEVFDNFTEKN 854

Query: 269  SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-- 326
             V WN+MI+ Y  +   ++AL  F+ M + G+  D ST  S+LSAC+  G +  G ++  
Sbjct: 855  VVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFS 914

Query: 327  -----HG-------HACKVGVIDDVIVASALLDTYSKRGMPSDA---------CKL---- 361
                 HG       + C VG++             ++   P DA         C++    
Sbjct: 915  SLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNV 974

Query: 362  -FSELKVYDTILLNT--------MITVYSSCGRIEDAKHIFRTM--------PNKSLISW 404
              +E    + + LN         +  VY++ GR +D   I R M        P +S I  
Sbjct: 975  ALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 1034

Query: 405  NSMIVG-LSQNGSPIEALDLFCNMNKLDLRMDK 436
            +++I   ++ + S  E  +++  + +L L M++
Sbjct: 1035 DNIIHEFIAADRSHPETAEIYEELKRLSLEMER 1067


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 161/551 (29%), Positives = 255/551 (46%), Gaps = 103/551 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL +C    S+   + +H   +K    +S + I NRL+ +Y +CG   DA  +FD M
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARIIKTQ-FSSEIFIQNRLVDVYGKCGFLEDARKVFDHM 80

Query: 68  PRRNCFSWNA-------------------------------MIEGFMKLGHKEKSLQLFN 96
            +RN FSWNA                               M+ GF +    E++L+ F 
Sbjct: 81  QQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR-FV 139

Query: 97  VMPQKNDFSWN----------------------------------------MLISGFAKA 116
           V     DF  N                                         L+  ++K 
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKC 199

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             + +A+  F+DM  RN ++WNS+I CY +NG A +A+ +F  + +  +E    D   LA
Sbjct: 200 RVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEP---DEITLA 256

Query: 177 TVIGACADLAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +V  ACA L+A+  G QIH+ ++  +    D VLG++LV++Y KC   N A  V + M  
Sbjct: 257 SVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            D    ++++SGYA    +  AR +F    + + V WN++I+GY  N E+ EA+ LF  +
Sbjct: 317 RDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +R  +     T  ++L+AC++L  L+ G+Q H H  K G              + K G  
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGF-------------WFKSGED 423

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           SD              + N++I +Y  CG +ED + +F  M  +  +SWN+MIVG +QNG
Sbjct: 424 SD------------IFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNG 471

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIIS 474
              EAL++F  M     R D  ++  V+SAC++   +E G   F  +TI  GL   +   
Sbjct: 472 YGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHY 531

Query: 475 TSLVDFYCKCG 485
           T +VD   + G
Sbjct: 532 TCMVDLLGRAG 542



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 148/315 (46%), Gaps = 32/315 (10%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+   A ++  C    ++   + +H+ I+      +  + + LV++YGKCG    A +V 
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           + M++ + F  +A++      G +++A  +F    +     WN+M+SG+   +   EAL 
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
               M     + +  +  S LSAC+ L  L  G Q+HG   K     DV + SAL+D YS
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K  + + A + F ++ V + +  N++IT Y                              
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCY------------------------------ 227

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDS 469
             QNG   +AL++F  M    +  D+ +LASV SACA++S++  G Q+ ARV       +
Sbjct: 228 -EQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN 286

Query: 470 DQIISTSLVDFYCKC 484
           D ++  +LVD Y KC
Sbjct: 287 DLVLGNALVDMYAKC 301


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 224/444 (50%), Gaps = 75/444 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N ++  + K G    +  LF+ M +++ FSWN L+S +AK+G ++  +  F+ MP R
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR 118

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +++++N+ I  +  N   +E++ LFK +  +  E  +   + + +++ A A L  L YGK
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE---YTIVSILNASAQLLDLRYGK 175

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----------------- 235
           QIH  I+V     +  + ++L ++Y KCG+   A  + + + +                 
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 236 ------------------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                             PD   +S +I+ Y  CG++++ARRVF    +   V W +M+ 
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMV 295

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  N  + +ALLLF++M    +  D+ TL+SV+S+C+ L  L HG+ VHG +   G+ +
Sbjct: 296 GYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN 355

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           +++V+SAL+D YSK G   D                               A+ +F  MP
Sbjct: 356 NLLVSSALIDMYSKCGFIDD-------------------------------ARSVFNLMP 384

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            ++++SWN+MIVG +QNG   +AL+LF NM +   + D  +   ++SAC + + +E G++
Sbjct: 385 TRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQE 444

Query: 458 VFARVTIIGLDSDQIISTSLVDFY 481
            F  +      S+Q   T  +D Y
Sbjct: 445 YFDSI------SNQHGMTPTLDHY 462



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 175/342 (51%), Gaps = 36/342 (10%)

Query: 182 CADLAALEYGKQIHSHILVNGLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           C     +   K++ SH+  +     DS L + L++LY K G    A  + + M + D F 
Sbjct: 32  CVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFS 91

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +AL+S YA  G + + +  FDR     SV +N+ I+G+  N+   E+L LF +M+R G 
Sbjct: 92  WNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGF 151

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK--------- 351
                T+ S+L+A + L  L +GKQ+HG       + +V + +AL D Y+K         
Sbjct: 152 EPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 352 ----------------------RGMPSDACKLFSELKVY----DTILLNTMITVYSSCGR 385
                                  G P     L  ++++     D + ++T+I  Y  CGR
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGR 271

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +++A+ +F     K ++ W +M+VG ++NG   +AL LF  M    +  D ++L+SV+S+
Sbjct: 272 VDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSS 331

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           CA ++SL  G+ V  +  + GL+++ ++S++L+D Y KCGFI
Sbjct: 332 CAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFI 373



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 79/155 (50%)

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D  + + LL  Y+K G   DA  LF ++   D    N +++ Y+  G I++ K  F  MP
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            +  +S+N+ I G S N  P E+L+LF  M +      ++++ S+++A A +  L  G+Q
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +   + +     +  I  +L D Y KCG I+   +
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 58/280 (20%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ 100
           ++  Y +CG   +A  +F E   ++   W AM+ G+ K G +E +L LFN M      P 
Sbjct: 262 IIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPD 321

Query: 101 KNDFSW----------------------------NMLISG-----FAKAGELKTARTLFN 127
               S                             N+L+S      ++K G +  AR++FN
Sbjct: 322 SYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFN 381

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP RN ++WN+MI    +NG  ++A+ LF+ +   L ++ + D      ++ AC     
Sbjct: 382 LMPTRNVVSWNAMIVGCAQNGHDKDALELFENM---LQQKFKPDNVTFIGILSACLHCNW 438

Query: 188 LEYGKQI-----HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCL 241
           +E G++      + H +   LD  + +    VNL G+ G    A  ++ NM  +PD    
Sbjct: 439 IEQGQEYFDSISNQHGMTPTLDHYACM----VNLLGRTGRIEQAVALIKNMAHDPDFLIW 494

Query: 242 SALISGYANCGKMND----ARRVF--DRTTDTSSVMWNSM 275
           S L+S  +  G + +    AR +F  D T     +M ++M
Sbjct: 495 STLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNM 534



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 23/242 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ SC    S+H G+ +H   +  G LN+ L +++ L+ MY +CG   DA  +F+ M
Sbjct: 325 LSSVVSSCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQK---NDFSWNMLISGFAKAGELKTAR 123
           P RN  SWNAMI G  + GH + +L+LF N++ QK   ++ ++  ++S       ++  +
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ +  ++ +      +  M++   R G   +AV L K +  D       D  I +T+
Sbjct: 444 EYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHD------PDFLIWSTL 497

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
           +  C+    +   +    H+     + D  +      L N+Y   G +     V N+MK 
Sbjct: 498 LSICSTKGDIVNAEVAARHL----FELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKS 553

Query: 236 PD 237
            +
Sbjct: 554 KN 555


>gi|255561307|ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539055|gb|EEF40651.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 574

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 248/504 (49%), Gaps = 53/504 (10%)

Query: 3   TRIDYLARLLQSCNTHHSIH--VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           T  ++ A LLQ C     I     + +H H +  G       + NRL+ +Y +    + A
Sbjct: 13  TAANHYASLLQLCCPQSPISYPFARTIHAHMIASGFKPHGHTL-NRLIYIYCKSSKLSYA 71

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             LFDE+P                               Q +  +   LI+ ++  G LK
Sbjct: 72  RSLFDEIP-------------------------------QPDIVARTTLINAYSATGHLK 100

Query: 121 TARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            A+ +F + P   R+A+ +N+MI  Y  N     A+ LF ++  +     + D F   +V
Sbjct: 101 LAKEMFYETPLIMRDAVIYNAMITAYSHNNDGHAAIELFCDMKRN---DFRPDNFTFTSV 157

Query: 179 IGACADLAALE-YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---------FNSANQ 228
           +GA A +A  E + +Q+H  ++ +G  F + + ++L+++Y KC             +A +
Sbjct: 158 LGALALVAENERHCQQLHCTVVKSGTWFVTSVLNALISVYVKCASSPSVISSSLMGAARR 217

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + + M   D+   + +I+GY     ++ AR VFD   +   V+WN+MISGY+      EA
Sbjct: 218 LFDEMPVRDELSWTTIITGYVKNDDLDAAREVFDGMREKLVVVWNAMISGYMHRGLYQEA 277

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD----VIVASA 344
           L +F KM   G+  D  T  S++SAC++ GFL+HGKQVH +  K   +      + V +A
Sbjct: 278 LEMFRKMYLAGLKLDEFTYTSIISACANAGFLQHGKQVHAYILKTEAMPSPDFSLPVNNA 337

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  Y K G   +A ++F+ + V D +  NT+++ Y + GR+++AK  F  MP K+++SW
Sbjct: 338 LVTLYWKCGKVDEAQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKNILSW 397

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
             MI GL+QNG   E L LF  M         ++ A  I++C+ +  LE G Q+ A++  
Sbjct: 398 VVMISGLAQNGFGEEGLKLFNQMKLRGFEPCDYAFAGAITSCSMLGLLEHGRQLHAQLVR 457

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
            G DS      +L+  Y +CG ++
Sbjct: 458 FGFDSSLSAGNALITMYARCGVVE 481



 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 197/371 (53%), Gaps = 38/371 (10%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF+ MP +++ SW  +I+G+ K  +L  AR +F+ M  +  + WN+MI  Y+  G  +E
Sbjct: 217 RLFDEMPVRDELSWTTIITGYVKNDDLDAAREVFDGMREKLVVVWNAMISGYMHRGLYQE 276

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL----VNGLDFDSV 208
           A+ +F+++    +  L+ D F   ++I ACA+   L++GKQ+H++IL    +   DF   
Sbjct: 277 ALEMFRKM---YLAGLKLDEFTYTSIISACANAGFLQHGKQVHAYILKTEAMPSPDFSLP 333

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LV LY KCG  + A +V N M   D    + ++SGY N G+M++A+  F+   + +
Sbjct: 334 VNNALVTLYWKCGKVDEAQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKN 393

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W  MISG   N    E L LF++M+  G        A  +++CS LG LEHG+Q+H 
Sbjct: 394 ILSWVVMISGLAQNGFGEEGLKLFNQMKLRGFEPCDYAFAGAITSCSMLGLLEHGRQLHA 453

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              + G  D  + A                               N +IT+Y+ CG +E 
Sbjct: 454 QLVRFG-FDSSLSAG------------------------------NALITMYARCGVVEA 482

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F +MP    +SWN+MI  L Q+G  ++A++LF  M    +  D+ +  +V+SAC++
Sbjct: 483 ARTLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPDRITFLTVLSACSH 542

Query: 449 ISSLELGEQVF 459
              ++ G + F
Sbjct: 543 AGLVKEGHRYF 553



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 170/346 (49%), Gaps = 20/346 (5%)

Query: 164 LVERLQCDAFILATVIGACADLAALEY--GKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            +E ++  A   A+++  C   + + Y   + IH+H++ +G        + L+ +Y K  
Sbjct: 7   FIEHVRTAANHYASLLQLCCPQSPISYPFARTIHAHMIASGFKPHGHTLNRLIYIYCKSS 66

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT--DTSSVMWNSMISGY 279
             + A  + + + +PD    + LI+ Y+  G +  A+ +F  T      +V++N+MI+ Y
Sbjct: 67  KLSYARSLFDEIPQPDIVARTTLINAYSATGHLKLAKEMFYETPLIMRDAVIYNAMITAY 126

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE-HGKQVHGHACKVGVIDD 338
             NN+   A+ LF  M+RN    D  T  SVL A + +   E H +Q+H    K G    
Sbjct: 127 SHNNDGHAAIELFCDMKRNDFRPDNFTFTSVLGALALVAENERHCQQLHCTVVKSGTWFV 186

Query: 339 VIVASALLDTYSK---------RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             V +AL+  Y K           +   A +LF E+ V D +   T+IT Y     ++ A
Sbjct: 187 TSVLNALISVYVKCASSPSVISSSLMGAARRLFDEMPVRDELSWTTIITGYVKNDDLDAA 246

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  M  K ++ WN+MI G    G   EAL++F  M    L++D+F+  S+ISACAN 
Sbjct: 247 REVFDGMREKLVVVWNAMISGYMHRGLYQEALEMFRKMYLAGLKLDEFTYTSIISACANA 306

Query: 450 SSLELGEQVFARV----TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             L+ G+QV A +     +   D    ++ +LV  Y KCG  K+DE
Sbjct: 307 GFLQHGKQVHAYILKTEAMPSPDFSLPVNNALVTLYWKCG--KVDE 350



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 147/318 (46%), Gaps = 68/318 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNS---TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +C     +  GKQ+H + LK   + S   +LP+ N L+ +Y +CG   +A       
Sbjct: 299 IISACANAGFLQHGKQVHAYILKTEAMPSPDFSLPVNNALVTLYWKCGKVDEAQ------ 352

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                    ++FN MP ++  SWN ++SG+  AG +  A+T F 
Sbjct: 353 -------------------------EVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFE 387

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +MP +N ++W  MI    +NGF  E ++LF ++     E   CD +  A  I +C+ L  
Sbjct: 388 EMPEKNILSWVVMISGLAQNGFGEEGLKLFNQMKLRGFE--PCD-YAFAGAITSCSMLGL 444

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE+G+Q+H+ ++  G  FDS L +                              +ALI+ 
Sbjct: 445 LEHGRQLHAQLVRFG--FDSSLSAG-----------------------------NALITM 473

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA CG +  AR +F       SV WN+MI+    +    +A+ LF +M   G+L D  T 
Sbjct: 474 YARCGVVEAARTLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPDRITF 533

Query: 308 ASVLSACSSLGFLEHGKQ 325
            +VLSACS  G ++ G +
Sbjct: 534 LTVLSACSHAGLVKEGHR 551


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 219/446 (49%), Gaps = 54/446 (12%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           +MR G    AL LF+ MPRR+  SWNAMI G +       + QLF  MP ++  SWN++I
Sbjct: 59  HMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMI 118

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           SG  +   L+ AR LF+ MP R+ ++WN+M+  Y +NG+ +EA  +F E+          
Sbjct: 119 SGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM---------- 168

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
                      C                  N + ++ +L + + N     G    A ++ 
Sbjct: 169 ----------PCK-----------------NSISWNGMLAAYVQN-----GRIEDARRLF 196

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
               + +    + ++ GY    ++ DAR +FDR  +   V WN+MISGY  N E  EA  
Sbjct: 197 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR 256

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTY 349
           LF +      + D  T  +++S     G L+  ++V  G   K  V  + I+A      Y
Sbjct: 257 LFEE----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAG-----Y 307

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            +      A +LF  +   +    NTMIT Y+  G I  A++ F  MP +  ISW ++I 
Sbjct: 308 VQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 367

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G +Q+G   EAL LF  M +   R+++ +  S +S CA I++LELG+QV  RV   GL+S
Sbjct: 368 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 427

Query: 470 DQIISTSLVDFYCKCGFIKMDEYYLM 495
              +  +L+  YCKCG I  D+ Y++
Sbjct: 428 GCYVGNALLVMYCKCGNI--DDAYIV 451



 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 209/442 (47%), Gaps = 43/442 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G   +A  +FDEMP +N  SWN M+  +++ G  E + +LF         
Sbjct: 146 NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELI 205

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN ++ G+ K   L  AR +F+ MP R+ ++WN+MI  Y +NG   EA RLF+E     
Sbjct: 206 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR- 264

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                 D F    ++        L+  +++   +     + +SV  ++++  Y +C   +
Sbjct: 265 ------DVFTWTAMVSGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGYVQCKRMD 314

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A ++   M   +    + +I+GYA  G +  AR  FDR     S+ W ++I+GY  +  
Sbjct: 315 QARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGY 374

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL LF +M+R+G   + ST  S LS C+ +  LE GKQVHG   K G+     V +A
Sbjct: 375 GEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNA 434

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           LL  Y K G   DA  +F  ++  + +  NTMI  Y        A+H F           
Sbjct: 435 LLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY--------ARHGFGK--------- 477

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
                         EAL LF +M K  +  D  ++  V+SAC++   ++ G + F  +T 
Sbjct: 478 --------------EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 523

Query: 465 -IGLDSDQIISTSLVDFYCKCG 485
             G+ ++    T ++D   + G
Sbjct: 524 DYGITANSKHYTCMIDLLGRAG 545



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 185/361 (51%), Gaps = 42/361 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y++ G   +A  +FD MP +N  SWNA+I G+++    +++ +LF  MP +N  SW
Sbjct: 272 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW 331

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +I+G+A+ G++  AR  F+ MP+R++I+W ++I  Y ++G+  EA+ LF E+  D  E
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRD-GE 390

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           RL    F   + +  CA++AALE GKQ+H  ++  GL+    +G++L+ +Y KC      
Sbjct: 391 RLNRSTF--TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC------ 442

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                    G ++DA  VF+   +   V WN+MI+GY  +    
Sbjct: 443 -------------------------GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGK 477

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASAL 345
           EAL+LF  M++ G+L D  T+  VLSACS  G ++ G +  +      G+  +    + +
Sbjct: 478 EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCM 537

Query: 346 LDTYSKRGMPSDACKLFSELK------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           +D   + G   DA  L   +        +  +L  + I   +  G  + AK IF   P+ 
Sbjct: 538 IDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE-KAAKMIFEMEPDN 596

Query: 400 S 400
           S
Sbjct: 597 S 597



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 20/289 (6%)

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D D V  +  +  + + G  +SA ++ N M        +A+ISG  +  K   AR++F++
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 V WN MISG +       A LLF +M       D  +  ++LS  +  G+++  
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPE----RDVVSWNAMLSGYAQNGYVKEA 161

Query: 324 KQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           K++     CK     + I  + +L  Y + G   DA +LF     ++ I  N M+  Y  
Sbjct: 162 KEIFDEMPCK-----NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVK 216

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
             R+ DA+ IF  MP +  +SWN+MI G +QNG  +EA  LF    +  +R D F+  ++
Sbjct: 217 RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF---EESPVR-DVFTWTAM 272

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +S       L+   +VF  +     + + +   +++  Y +C   +MD+
Sbjct: 273 VSGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGYVQCK--RMDQ 315



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 39/251 (15%)

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            TD   V WN  I+ ++ N +   AL LF+ M R   +    +  +++S C S       
Sbjct: 44  ATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSI----SWNAMISGCLSNDKFYLA 99

Query: 324 KQVHGHACKVGVID---------------------------DVIVASALLDTYSKRGMPS 356
           +Q+        ++                            DV+  +A+L  Y++ G   
Sbjct: 100 RQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVK 159

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           +A ++F E+   ++I  N M+  Y   GRIEDA+ +F +  +  LISWN M+ G  +   
Sbjct: 160 EAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNR 219

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
            ++A  +F  M +     D+ S  ++IS  A    L   +++F    +     D    T+
Sbjct: 220 LVDARGIFDRMPE----RDEVSWNTMISGYAQNGELLEAQRLFEESPV----RDVFTWTA 271

Query: 477 LVDFYCKCGFI 487
           +V  Y + G +
Sbjct: 272 MVSGYVQNGML 282



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G L S   + N LL MY +CGN  DA ++F+ +  + 
Sbjct: 401 LSTCAEIAALELGKQVHGRVVKAG-LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKE 459

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI G+ + G  +++L LF  M +     +D +   ++S  +  G +      F 
Sbjct: 460 VVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFY 519

Query: 128 DMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   I  NS     MI    R G   +A  L K +        + DA     ++GA 
Sbjct: 520 SMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMP------FEPDAATWGALLGAS 573

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 E G++    I     D +S +   L NLY   G +    ++   M++
Sbjct: 574 RIHGNTELGEKAAKMIFEMEPD-NSGMYVLLSNLYAASGRWGDVGRMRLRMRD 625


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 244/468 (52%), Gaps = 38/468 (8%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
            GK +H   +K G L+  + + N L+  Y + G   DA  +FDEM               
Sbjct: 31  TGKSIHARIIKAG-LHLGVFLMNNLMNFYAKTGFIYDAHRVFDEM--------------- 74

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                           P K+ FSWN+++SG+AK G L+ A  +F +MP  ++++W +MI 
Sbjct: 75  ----------------PVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIV 118

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y + G    A+ +F+E+ SD V   Q   F L  V+ +CA +  L  G+++HS ++ +G
Sbjct: 119 GYNQMGQFENAIGMFREMVSDDVPPTQ---FTLTNVLASCAAVECLGIGRKVHSFVVKHG 175

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L     + +SL+N+Y K GD  +A  V + MK       + +IS +   G ++ A+  F+
Sbjct: 176 LSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFE 235

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLE 321
           +  +   V WN+MISGY  +  D EAL +F KM  +   + D  TLAS LSAC++L  L+
Sbjct: 236 QMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLK 295

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTILLNTMITV 379
            GKQ+H H  +        V +AL+  YSK G    A K+  +  +   D I    ++  
Sbjct: 296 LGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDG 355

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y   G I  A+ IF ++  + +++W +MIVG  QNG   +A++LF +M K   + + ++L
Sbjct: 356 YVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTL 415

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           A+++S  ++++SL+ G Q+ A  T  G  S   +S +L+  Y K G I
Sbjct: 416 ATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSI 463



 Score =  218 bits (554), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 147/489 (30%), Positives = 243/489 (49%), Gaps = 77/489 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC     + +G+++H   +K G L+S + +AN LL MY + G+P  A ++FD M
Sbjct: 148 LTNVLASCAAVECLGIGRKVHSFVVKHG-LSSYISVANSLLNMYAKSGDPVTAKIVFDRM 206

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                           KL               K+  SWN +IS   ++G +  A+  F 
Sbjct: 207 ----------------KL---------------KSTSSWNTMISSHMQSGLVDLAQVQFE 235

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  R+ ++WN+MI  Y ++GF REA+ +F ++  D   +   D F LA+ + ACA+L  
Sbjct: 236 QMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSK--PDKFTLASALSACANLEN 293

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL--NMMKEPDDFCLSALI 245
           L+ GKQIH+HI+    D    +G++L+++Y K G    A +++  +M+   D    +AL+
Sbjct: 294 LKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G +N ARR+FD       V W +MI GY+ N  + +A+ LF  M + G   +  
Sbjct: 354 DGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNY 413

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA++LS  SSL  L+HG+Q+H  A + G    V V++AL+  Y+K              
Sbjct: 414 TLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAK-------------- 459

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLF 424
                             G I DA+ +F  +   +  I+W SMI+ L+Q+G   EAL LF
Sbjct: 460 -----------------SGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLF 502

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-----LVD 479
             M +  ++ D  +   V+SAC ++  +E G   +  +     ++ +II T      ++D
Sbjct: 503 ERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQ----NAHKIIPTPSHYACMID 558

Query: 480 FYCKCGFIK 488
            + + G ++
Sbjct: 559 LFGRAGLLQ 567



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 173/307 (56%), Gaps = 1/307 (0%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH+ I+  GL     L ++L+N Y K G    A++V + M     F  + ++SGYA 
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G++ +A RVF+   +  SV W +MI GY    +   A+ +F +M  + V     TL +V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L++C+++  L  G++VH    K G+   + VA++LL+ Y+K G P  A  +F  +K+  T
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NK 429
              NTMI+ +   G ++ A+  F  M  + ++SWN+MI G +Q+G   EALD+F  M   
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
              + DKF+LAS +SACAN+ +L+LG+Q+ A +     D+   +  +L+  Y K G +++
Sbjct: 272 SSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEI 331

Query: 490 DEYYLMQ 496
            +  + Q
Sbjct: 332 AQKIIEQ 338



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 193/433 (44%), Gaps = 105/433 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L +C    ++ +GKQ+H H ++    ++   + N L+ MY + G    A  + ++ 
Sbjct: 281 LASALSACANLENLKLGKQIHAHIIRTE-FDTFGAVGNALISMYSKSGGVEIAQKIIEQ- 338

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                    +MI                      +  ++  L+ G+ K G++  AR +F+
Sbjct: 339 ---------SMISNL-------------------DVIAFTALLDGYVKLGDINPARRIFD 370

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  R+ +AW +MI  YV+NGF ++A+ LF+ +   + E  + + + LAT++   + LA+
Sbjct: 371 SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSM---IKEGPKPNNYTLATMLSVSSSLAS 427

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L++G+QIH+    +G                     N+++  ++          +ALI+ 
Sbjct: 428 LDHGRQIHASATRSG---------------------NASSVSVS----------NALITM 456

Query: 248 YANCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           YA  G +NDAR VF+       ++ W SMI     +    EAL LF +M  NG+  D  T
Sbjct: 457 YAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHIT 516

Query: 307 LASVLSACSSLGFLEHGKQVHG---HACKVGVIDDVIVASALLDTYSKRGMPSDA----- 358
              VLSAC+ +G +E G+  +    +A K+  I      + ++D + + G+  +A     
Sbjct: 517 YVGVLSACTHVGLVEQGRSYYNLMQNAHKI--IPTPSHYACMIDLFGRAGLLQEAHAFIE 574

Query: 359 -----------CKLFSELKVYDTILL-------------------NTMITVYSSCGRIED 388
                        L +  KV+  + L                   + +  VYS+CG+ E+
Sbjct: 575 NMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWEN 634

Query: 389 AKHIFRTMPNKSL 401
           A +I ++M +K +
Sbjct: 635 AANIRKSMKDKGV 647


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 244/480 (50%), Gaps = 53/480 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  + + G  +DA  LFD MP+RN  SWN+MI  ++     E++ QLF+ MP ++ +
Sbjct: 50  NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY 109

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCYVRNGFAREAVRLFKELNS- 162
           SW ++I+ + + GEL  AR LFN +P + N +  N+M+  Y +N    EA RLF  + + 
Sbjct: 110 SWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK 169

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           DLV           +++        +  G Q    +     + D V  + +V+ + + GD
Sbjct: 170 DLVS--------WNSMLTGYTRNGEMRLGLQFFEEMA----ERDVVSWNLMVDGFVEVGD 217

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
            NS+ +    +  P+      ++ G+A  GK+ +ARR+FD+    + V WN+MI+ Y+ N
Sbjct: 218 LNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQN 277

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               EA+ LF +M      +++ +  +V++    +G L+  +Q+           +V   
Sbjct: 278 CHVDEAISLFMEMPE----KNSISWTTVINGYVRMGKLDEARQLLNQM----PYRNVAAQ 329

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH----------- 391
           +A++  Y +     DA ++F+++ + D +  NTMI  YS CGR+++A H           
Sbjct: 330 TAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIV 389

Query: 392 --------------------IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                               IF  M  K+++SWNS+I GL+QNGS ++AL  F  M    
Sbjct: 390 SWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEG 449

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            + D+ + A  +S+CA++++L++G+Q+   V   G  +D  +S +L+  Y KCG I   E
Sbjct: 450 QKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAE 509



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 209/447 (46%), Gaps = 75/447 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y R G     L  F+EM  R+  SWN M++GF+++G    S + F  +P  N  
Sbjct: 175 NSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTV 234

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  ++ GFA+ G++  AR LF+ MP RN +AWN+MI  YV+N    EA+ LF E+    
Sbjct: 235 SWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK- 293

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDF 223
                 ++    TVI     +  L+  +Q     L+N + + +V   +++++ Y +    
Sbjct: 294 ------NSISWTTVINGYVRMGKLDEARQ-----LLNQMPYRNVAAQTAMISGYVQNKRM 342

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR------------------------- 258
           + A Q+ N +   D  C + +I+GY+ CG+M++A                          
Sbjct: 343 DDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVG 402

Query: 259 ------RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                 ++F+   + + V WNS+ISG   N    +AL  F  M   G   D ST A  LS
Sbjct: 403 QMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLS 462

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C+ L  L+ GKQ+H    K G   D+ V++AL+  Y+K G  S A  LF ++  +D + 
Sbjct: 463 SCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVS 522

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N++I  Y                               + NG+  EAL LF  M    +
Sbjct: 523 WNSLIAAY-------------------------------ALNGNGREALKLFHKMEVEGV 551

Query: 433 RMDKFSLASVISACANISSLELGEQVF 459
             D+ +   ++SAC+++  ++ G ++F
Sbjct: 552 APDEVTFVGILSACSHVGLIDQGLKLF 578



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 156/322 (48%), Gaps = 35/322 (10%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y++     DA  +F+++  R+   WN MI G+ + G  +++L LF  M +K+  SW
Sbjct: 332 MISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSW 391

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +++ +A+ G++  A  +F +M  +N ++WNS+I    +NG   +A++ F  +     E
Sbjct: 392 NTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGH---E 448

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + D    A  + +CA LAAL+ GKQ+H  ++ +G                        
Sbjct: 449 GQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGY----------------------- 485

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                     D F  +ALI+ YA CG ++ A  +F        V WNS+I+ Y  N    
Sbjct: 486 --------ATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGR 537

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-L 345
           EAL LFHKM   GV  D  T   +LSACS +G ++ G ++     +   I+ +    A +
Sbjct: 538 EALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACM 597

Query: 346 LDTYSKRGMPSDACKLFSELKV 367
           +D   + G   +A +L   +K+
Sbjct: 598 VDLLGRAGRLEEAFQLVRGMKI 619



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 23/236 (9%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L SC    ++ VGKQLH   +K G   + L ++N L+ MY +CG+ + A LLF ++   +
Sbjct: 461 LSSCAHLAALQVGKQLHQLVMKSGYA-TDLFVSNALITMYAKCGSISSAELLFKDIDHFD 519

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN++I  +   G+  ++L+LF+ M       ++ ++  ++S  +  G +     LF 
Sbjct: 520 VVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFK 579

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   I      +  M+    R G   EA +L + +      ++  +A I   ++GAC
Sbjct: 580 CMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM------KINANAGIWGALLGAC 633

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
                LE  K     +    L+F+    S+ V   N+  + G ++   +V  +MKE
Sbjct: 634 RIHGNLELAKFAAEKL----LEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKE 685


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 226/415 (54%), Gaps = 6/415 (1%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++  + K G    +  LFN MP K  FSWN ++SG+AK G+L+ A  +F+ +P R+++
Sbjct: 14  NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W ++I  Y + G   +A+++F ++  D V   Q   F L  V+ +CA   +   GK++H
Sbjct: 74  SWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQ---FTLTNVLASCAATGSRGIGKKVH 130

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           S ++  GL     + +SL+N+Y K GD   A  V + MK  +    +A+IS + NCG+++
Sbjct: 131 SFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVD 190

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 314
            A   F+  ++   V WNSMI+G   +  D EAL  F  + ++  L+ D  +LAS LSAC
Sbjct: 191 LALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSAC 250

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTIL 372
           ++L  L  GKQ+HG+  +        V +AL+  Y+K G    A ++  +  +   D I 
Sbjct: 251 ANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIA 310

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              ++  Y   G I  A+ IF ++ +  +++W +MIVG  QNG   +A+++F  M     
Sbjct: 311 FTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGP 370

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           R + F+LA+++SA ++++SL  G+Q+ A     G      +  +L   Y K G I
Sbjct: 371 RPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSI 425



 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 231/484 (47%), Gaps = 67/484 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    S  +GK++H   +K G L++ +P+AN LL MY + G+   A ++FD M
Sbjct: 110 LTNVLASCAATGSRGIGKKVHSFVVKLG-LHACVPVANSLLNMYAKTGDLKMAKVVFDRM 168

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R                               N  SWN +IS     G +  A   F 
Sbjct: 169 KLR-------------------------------NTSSWNAMISLHMNCGRVDLALAQFE 197

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  R+ ++WNSMI    ++GF  EA++ F  +  D    L+ D F LA+ + ACA+L  
Sbjct: 198 LLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKD--TSLKPDRFSLASALSACANLEK 255

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM--MKEPDDFCLSALI 245
           L +GKQIH +I+    D    +G++L+++Y K G    A +++    + + D    +AL+
Sbjct: 256 LSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALL 315

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           +GY   G +  AR++F+   D   V W +MI GY+ N  + +A+ +F  M   G   ++ 
Sbjct: 316 NGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSF 375

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA++LSA SS+  L HGKQ+H  A + G      V +AL   Y+K G  + A K+F+ L
Sbjct: 376 TLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLL 435

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
           +                               N+  +SW SMI+ L+Q+G   EA++LF 
Sbjct: 436 R------------------------------QNRDTVSWTSMIMALAQHGLGEEAIELFE 465

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKC 484
            M  L ++ D  +   V+SAC +   +E G   F  +  +  +D        +VD + + 
Sbjct: 466 QMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRA 525

Query: 485 GFIK 488
           G ++
Sbjct: 526 GLLQ 529



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 164/296 (55%), Gaps = 1/296 (0%)

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL F   L ++L+NLY K G    A+ + N M     F  + ++SGYA  GK+  A +VF
Sbjct: 5   GLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVF 64

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D      SV W ++I GY       +A+ +F  M ++ VL    TL +VL++C++ G   
Sbjct: 65  DLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRG 124

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK+VH    K+G+   V VA++LL+ Y+K G    A  +F  +K+ +T   N MI+++ 
Sbjct: 125 IGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM 184

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLA 440
           +CGR++ A   F  +  + ++SWNSMI G +Q+G   EAL  F ++ K   L+ D+FSLA
Sbjct: 185 NCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLA 244

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           S +SACAN+  L  G+Q+   +     D+   +  +L+  Y K G +++    + Q
Sbjct: 245 SALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQ 300



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 212/498 (42%), Gaps = 110/498 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L +C     +  GKQ+H  ++ + + +++  + N L+ MY + G          E+
Sbjct: 243 LASALSACANLEKLSFGKQIH-GYIVRTMFDASGAVGNALISMYAKSGGV--------EI 293

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            RR       +IE        +  +   +V+      ++  L++G+ K G++  AR +FN
Sbjct: 294 ARR-------IIE--------QSGISDLDVI------AFTALLNGYVKLGDITPARQIFN 332

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +   + +AW +MI  YV+NG   +A+ +FK + S   E  + ++F LA ++ A + + +
Sbjct: 333 SLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVS---EGPRPNSFTLAAMLSASSSVTS 389

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L +GKQIH+  + +G      +G++L  +Y K                            
Sbjct: 390 LNHGKQIHASAIRSGEALSPSVGNALTTMYAKA--------------------------- 422

Query: 248 YANCGKMNDARRVFDR-TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
               G +N AR+VF+    +  +V W SMI     +    EA+ LF +M   G+  D  T
Sbjct: 423 ----GSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHIT 478

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACK----- 360
              VLSAC+  G +E G+        V  ID  +   A ++D + + G+  +A K     
Sbjct: 479 YVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENM 538

Query: 361 -----------LFSELKVYDTILL-------------------NTMITVYSSCGRIEDAK 390
                      L S  KVY  + L                   + +  VYSSCG+ +DA 
Sbjct: 539 PMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAA 598

Query: 391 HIFRTMPNKSL-----ISW----NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            I + M  + +     +SW    N   V   ++G   +  +++  M+K+   + K   A 
Sbjct: 599 KIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAP 658

Query: 442 VISACANISSLELGEQVF 459
              +  +   +E+ +Q+ 
Sbjct: 659 DTESVLHDLEVEVKDQIL 676



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 95/158 (60%)

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K+G+   V + + L++ Y+K G   DA  LF+E+ V  T   NT+++ Y+  G++E A  
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  +P +  +SW ++IVG +Q G   +A+ +F +M K  +   +F+L +V+++CA   S
Sbjct: 63  VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGS 122

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             +G++V + V  +GL +   ++ SL++ Y K G +KM
Sbjct: 123 RGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKM 160


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 147/525 (28%), Positives = 244/525 (46%), Gaps = 107/525 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C T   +  G+Q+H H  K G   S + ++  L+ MY +CG+   A  +F+EM  R
Sbjct: 158 ILSACQTPIVLEFGEQIHSHITKAG-YESDVNVSTALINMYCKCGSLELARKVFNEMRER 216

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFS------------------- 105
           N  SW AMI G+++ G  +++  LF         P K  F+                   
Sbjct: 217 NVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLH 276

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LIS +A+ G L  AR +F+++   N ++WN+MI  Y   GF  
Sbjct: 277 AYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGY-GEGFME 335

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA RLF+++     +  Q D F  A+++  CAD A L  GK++HS I+    + D  + +
Sbjct: 336 EAFRLFRDMQQ---KGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVAT 392

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                          ALIS YA CG + +AR+VF++  + ++V 
Sbjct: 393 -------------------------------ALISMYAKCGSLEEARKVFNQMPEKNAVS 421

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+ I+    +  + EA  +F +MRR+ V+ D  T  ++L++C+S    E G+ +HG   
Sbjct: 422 WNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKID 481

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G++ + +VA+AL+  Y + G  +DA ++F  ++  D                      
Sbjct: 482 QWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRD---------------------- 519

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                    L SWN+MI    Q+G+   A DLF        + DK++  +V+ A AN+  
Sbjct: 520 ---------LGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLED 570

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           L+ G ++   V   GL+ D  I T+L+  Y KCG ++ D Y + +
Sbjct: 571 LDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLR-DAYSVFK 614



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 194/382 (50%), Gaps = 66/382 (17%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           NMLIS ++K G ++ A  +F  M  ++ ++WN+MI  Y  +G  +EAV LF ++  + ++
Sbjct: 90  NMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLK 149

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             Q ++FI  +++ AC     LE+G+QIHSHI   G + D  + ++L+N+Y KCG    A
Sbjct: 150 PNQ-NSFI--SILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELA 206

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +V N M+E +    +A+IS                               GY+ + +  
Sbjct: 207 RKVFNEMRERNVVSWTAMIS-------------------------------GYVQHGDSK 235

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EA +LF K+ R+G   +  + AS+L AC++   LE G ++H +  + G+  +V+V +AL+
Sbjct: 236 EAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALI 295

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y++ G  ++A ++F  L+  + +  N MI  Y   G +E+A  +FR M  K       
Sbjct: 296 SMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKG------ 348

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
                                     + D+F+ AS+++ CA+ + L  G+++ +++    
Sbjct: 349 -------------------------FQPDRFTYASLLAICADRADLNRGKELHSQIVRTA 383

Query: 467 LDSDQIISTSLVDFYCKCGFIK 488
            ++D  ++T+L+  Y KCG ++
Sbjct: 384 WEADVTVATALISMYAKCGSLE 405



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 205/481 (42%), Gaps = 111/481 (23%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R  Y A LL  C     ++ GK+LH   ++     + + +A  L+ MY +CG+  +A  +
Sbjct: 353 RFTY-ASLLAICADRADLNRGKELHSQIVRTA-WEADVTVATALISMYAKCGSLEEARKV 410

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF------------- 104
           F++MP +N  SWNA I    + G ++++ Q+F      +V+P    F             
Sbjct: 411 FNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDF 470

Query: 105 -----------SWNML---------ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                       W ML         IS + + G+L  AR +F  + RR+  +WN+MI  Y
Sbjct: 471 ERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAY 530

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V++G    A  LF +  S   E  + D +    V+ A A+L  L+ G++IH  +   GL 
Sbjct: 531 VQHGANGSAFDLFIKYKS---EGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGL- 586

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                                         E D   L+ LI  Y+ CG + DA  VF   
Sbjct: 587 ------------------------------EKDIRILTTLIKMYSKCGSLRDAYSVFKNV 616

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            +   V WN+M++ Y  ++   +AL LF +MR  GV  D++T  SVL+AC+ LG +EHGK
Sbjct: 617 QEKDVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGK 676

Query: 325 QVHG-------------HACKVGVID-------------------DVIVASALL---DTY 349
           + H              +AC V  +                    D ++  +LL     +
Sbjct: 677 KFHTQLKEAAMETDTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIH 736

Query: 350 SKRGMPSDACKLFSELKVYDT-ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
              G+   A +   ++K   +  +   ++ +Y++ GR ED   I  TM    L++  S  
Sbjct: 737 HNVGLAETAVEHLLDVKAQSSPAVCEQLMNIYAAAGRWEDVSVIKATMREAGLLAPKSCT 796

Query: 409 V 409
           +
Sbjct: 797 I 797



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 31/251 (12%)

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           EPD +  + LIS Y+ CG + DA  VF    D   V WN+MISGY  +    EA+ LF++
Sbjct: 83  EPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQ 142

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+R G+  + ++  S+LSAC +   LE G+Q+H H  K G   DV V++AL++ Y K G 
Sbjct: 143 MQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGS 202

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A K+F+E++  + +    MI+                               G  Q+
Sbjct: 203 LELARKVFNEMRERNVVSWTAMIS-------------------------------GYVQH 231

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G   EA  LF  + +   + +K S AS++ AC N + LE G ++ A +   GL+ + ++ 
Sbjct: 232 GDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVG 291

Query: 475 TSLVDFYCKCG 485
            +L+  Y +CG
Sbjct: 292 NALISMYARCG 302



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 31/193 (16%)

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           + GV  + +  A  L  C     L  GK+VH H           + SA  +         
Sbjct: 44  KRGVQANLNFYARRLQECVQAKSLAEGKKVHDH-----------MRSAQFEP-------- 84

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
                       D  L N +I++YS CG IEDA ++F++M +K ++SWN+MI G + +G 
Sbjct: 85  ------------DIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGR 132

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             EA+DLF  M +  L+ ++ S  S++SAC     LE GEQ+ + +T  G +SD  +ST+
Sbjct: 133 GQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTA 192

Query: 477 LVDFYCKCGFIKM 489
           L++ YCKCG +++
Sbjct: 193 LINMYCKCGSLEL 205


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/469 (29%), Positives = 222/469 (47%), Gaps = 107/469 (22%)

Query: 5   IDYLARLLQ-----------SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR 53
           +DYL R+ Q           +C  H  + +GK++H H      +   + I+NRL+ MY +
Sbjct: 52  VDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIV-ISNRLIHMYAK 110

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF 113
           CG+  DA +LFDE+                               PQK+  SWN +ISG+
Sbjct: 111 CGSLVDAQMLFDEI-------------------------------PQKDLCSWNTMISGY 139

Query: 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           A  G ++ AR LF++MP R+  +WN++I  YV  G+  EA+ LF+ +  +  E   C+ F
Sbjct: 140 ANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQEN--ESSNCNMF 197

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            L++ + A A +++L  GK+IH +++ +GL+ D V+ ++L++LYGK              
Sbjct: 198 TLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGK-------------- 243

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                            CG +N+AR +FD+  D   V W +MI     +    E   LF 
Sbjct: 244 -----------------CGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFR 286

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            +  +GV  +  T A VL+AC+ L   + GK+VHG+  +VG       ASAL        
Sbjct: 287 DLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASAL-------- 338

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                  + VYS CG  E A+ +F  MP   L+SW S+IVG +Q
Sbjct: 339 -----------------------VHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQ 375

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           NG P  AL  F ++ +   + D+ +   V+SAC +   +++G + F  V
Sbjct: 376 NGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSV 424



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 175/341 (51%), Gaps = 38/341 (11%)

Query: 152 EAVRLFKELNS-----DLVERL-QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           E + LF + N      D + R+ Q    + +T+I AC     LE GK++H+H   +    
Sbjct: 37  EIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIP 96

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
             V+ + L+++Y KCG    A  + + + + D    + +ISGYAN G++  AR++FD   
Sbjct: 97  GIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMP 156

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGK 324
              +  WN++ISGY+S     EAL LF  M+ N     +  TL+S L+A +++  L  GK
Sbjct: 157 HRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGK 216

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++HG+  + G+  D +V +ALLD Y K G  ++A                          
Sbjct: 217 EIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEA-------------------------- 250

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                + IF  M +K ++SW +MI    ++G   E   LF ++    +R ++++ A V++
Sbjct: 251 -----RGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLN 305

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ACA++++ ++G++V   +T +G D     +++LV  Y KCG
Sbjct: 306 ACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCG 346


>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
 gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
          Length = 596

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 246/520 (47%), Gaps = 74/520 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C     +  G+QLH   +   +  S   +A++L+ +Y R G   DA  +FD +PR 
Sbjct: 20  LIQLCADSGHLAAGRQLHARLIALSVTPSNF-LASKLISLYSRTGRLDDARRVFDAIPRP 78

Query: 71  NCFSWNAM--------------IEGFMKLGHKEKSLQL---------------------F 95
           + F+WNA+              +  F   G     + L                     F
Sbjct: 79  SVFAWNAILIALSLHSPDPSAAVRFFAASGISPDEITLSALLKSLAESGPRLSALVAAEF 138

Query: 96  NVMPQKNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           + +  +  F       N LI+ +A AG+ ++AR +F+ MP+R+ ++WNS+I  Y R G+ 
Sbjct: 139 HAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWNSLISAYARAGWY 198

Query: 151 REAVRLFKELNS-DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           RE + LF+EL S      ++ ++  +A+++ ACA L A++YG ++H     NGLD D  +
Sbjct: 199 RECLELFQELASVHGAGGVRPNSVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAV 258

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            +S V  Y KCG    A ++   M + D    SA+I+GY N G ++    +F R+     
Sbjct: 259 WNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGI 318

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            +WN++I+G + N   +E L L ++M  +G+L +++TL+ ++ +      L   KQ HG+
Sbjct: 319 SIWNAVIAGLVQNGRQSEVLGLLNEMIGSGILPNSATLSIIIPSVHLFSTLLGVKQAHGY 378

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           A +      + V +AL+D YSK G                                ++ +
Sbjct: 379 AIRNNYDQSISVVTALIDAYSKAGF-------------------------------LDGS 407

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F++  ++S I W S+I  ++ +G   EAL LF  M    +R D  +  +V++ACA  
Sbjct: 408 LRVFKSTGDRSKIVWTSIISAVAAHGEAAEALCLFNEMANARIRPDTIAFTAVLTACAYT 467

Query: 450 SSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIK 488
             +    +VF  + ++ G++        +V  + + G +K
Sbjct: 468 GKVADARKVFNSMQVLFGINPVMEQYACMVSAFSRAGMLK 507



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 207/481 (43%), Gaps = 83/481 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L + L       S  V  + H   +++G     L ++N L+  Y   G+   A  +FD+M
Sbjct: 119 LLKSLAESGPRLSALVAAEFHAVAVQRG-FGDDLFVSNGLITAYANAGDSRSARAVFDKM 177

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN----------VMP---------------QKN 102
           P+R+  SWN++I  + + G   + L+LF           V P               +  
Sbjct: 178 PQRDVVSWNSLISAYARAGWYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKAI 237

Query: 103 DFS------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
           D+                   WN  +  +AK G+L+ AR LF  MP+++A+++++MI  Y
Sbjct: 238 DYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITGY 297

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVI--GACADLAALEYGKQIHSHILVNG 202
           + +G   + + LF+  ++  +        ++A ++  G  +++  L   + I S IL N 
Sbjct: 298 MNHGHVDKGMELFQRSDAQGISIWNA---VIAGLVQNGRQSEVLGL-LNEMIGSGILPNS 353

Query: 203 LD----------FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
                       F ++LG    + Y    +++ +  V           ++ALI  Y+  G
Sbjct: 354 ATLSIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISV-----------VTALIDAYSKAG 402

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            ++ + RVF  T D S ++W S+IS   ++ E  EAL LF++M    +  D     +VL+
Sbjct: 403 FLDGSLRVFKSTGDRSKIVWTSIISAVAAHGEAAEALCLFNEMANARIRPDTIAFTAVLT 462

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSELKVY-DT 370
           AC+  G +   ++V      +  I+ V+   A ++  +S+ GM  DA +L + +    + 
Sbjct: 463 ACAYTGKVADARKVFNSMQVLFGINPVMEQYACMVSAFSRAGMLKDALELVNSMPFEPNA 522

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            +   ++   +  G +E  + +F  +           I+     G+ I   +L+ N  K 
Sbjct: 523 KVWGPLLNGAAEFGDVELGRFVFDRL----------FIIEPKNTGNYIVMANLYSNAGKW 572

Query: 431 D 431
           +
Sbjct: 573 E 573



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 40/193 (20%)

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
             V  D      ++  C+  G L  G+Q+H     + V     +AS L+  YS+      
Sbjct: 8   TAVPPDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSR------ 61

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-QNGS 416
                                     GR++DA+ +F  +P  S+ +WN++++ LS  +  
Sbjct: 62  -------------------------TGRLDDARRVFDAIPRPSVFAWNAILIALSLHSPD 96

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII----GLDSDQI 472
           P  A+  F       +  D+ +L++++ + A  S   L   V A    +    G   D  
Sbjct: 97  PSAAVRFFAASG---ISPDEITLSALLKSLAE-SGPRLSALVAAEFHAVAVQRGFGDDLF 152

Query: 473 ISTSLVDFYCKCG 485
           +S  L+  Y   G
Sbjct: 153 VSNGLITAYANAG 165


>gi|356551964|ref|XP_003544342.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 551

 Score =  221 bits (563), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 243/514 (47%), Gaps = 100/514 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC    S  +GKQLH H +K G  N+   +  +LLQMY R  +  +A  +FD MP
Sbjct: 55  ASILDSCG---SPILGKQLHAHSIKSG-FNAHEFVTTKLLQMYARNCSFENACHVFDTMP 110

Query: 69  RRNCFSWNAMIEGF---------------------------------------------- 82
            RN  SW A++  +                                              
Sbjct: 111 LRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELG 170

Query: 83  -----MKLGHK---EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR--- 131
                M L H    + + ++F+   +K+  S+N +I+G+ + G L  A+ LF+ M +   
Sbjct: 171 RQMHGMALKHDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGV 230

Query: 132 -RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ I+WNSMI  YV      EA  LF++L   L E ++ D+F L +V+  CAD+A++  
Sbjct: 231 QKDRISWNSMISGYVDGSLFDEAYSLFRDL---LKEGIEPDSFTLGSVLAGCADMASIRR 287

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK+ HS  +V GL  +S++G +LV +Y KC D  +A    + + E D    +ALISGYA 
Sbjct: 288 GKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYAR 347

Query: 251 CGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           C +    R +  +      + +   WN +I+GY+ N +   A+ LF +M+   +  D  T
Sbjct: 348 CNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYT 407

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +  +L+ACS L  ++ GKQVH ++ + G   DV + +AL+D Y+K               
Sbjct: 408 VGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAK--------------- 452

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                           CG ++    ++  + N +L+S N+M+   + +G   E + LF  
Sbjct: 453 ----------------CGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRR 496

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           M    +R D  +  +V+S+C +  SLE+G +  A
Sbjct: 497 MLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLA 530



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 196/397 (49%), Gaps = 31/397 (7%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           ++F    L+  +A+    + A  +F+ MP RN  +W +++  Y+  GF  EA  LF++L 
Sbjct: 82  HEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLL 141

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            + V R++ D F+   V+  C  L A+E G+Q+H   L +                   G
Sbjct: 142 YEGV-RVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHD------------------G 182

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSMIS 277
           D  SA ++ +          +A+I+GY   G +  A+ +FDR          + WNSMIS
Sbjct: 183 DMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMIS 242

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY+  +   EA  LF  + + G+  D+ TL SVL+ C+ +  +  GK+ H  A   G+  
Sbjct: 243 GYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQS 302

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM- 396
           + IV  AL++ YSK      A   F  +   D    N +I+ Y+ C + E  + + + M 
Sbjct: 303 NSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMR 362

Query: 397 -----PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                PN  + +WN +I G  +N     A+ LF  M   +LR D +++  +++AC+ +++
Sbjct: 363 RDGFEPN--VYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLAT 420

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ G+QV A     G DSD  I  +LVD Y KCG +K
Sbjct: 421 IQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVK 457


>gi|302785117|ref|XP_002974330.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
 gi|300157928|gb|EFJ24552.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
          Length = 720

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 244/523 (46%), Gaps = 113/523 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C +  ++  G+ +H    + G   S L + N L+ MY +C +P DA  +FD M  R+
Sbjct: 1   LDACVSLKALSDGRDVHASVTRHG-FGSDLVLGNALINMYSKCSSPADARNVFDGMTVRD 59

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK------------------------ 101
             SWN MI  + + G  E+++++F+ M      P K                        
Sbjct: 60  SVSWNTMIATYARNGFGEEAVEVFHEMALVGIPPDKYTLISALDGCCGLSCPDRGLKKGR 119

Query: 102 ------------NDFSWNM-LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       +D +    LI  + K GE+  AR LF+ M RR A+ W  MI  Y +NG
Sbjct: 120 EIHRRIQSIGFMSDVALQTGLIKMYGKFGEVIEARRLFDGMSRRVALTWARMITAYGQNG 179

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+ L+K++  D+V     D  I A+V+ AC+    LE GK+IH+ I+    + D+V
Sbjct: 180 FGNEAIELYKQI--DVVP----DKVIFASVLDACSSAMNLEEGKRIHARIVEGKFEIDTV 233

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L++LYG CG    A  V + M+E                      R V        
Sbjct: 234 VNNTLLDLYGMCGCLEEAKAVFHSMQE--------------------QGRDV-------- 265

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGF--LEHGKQ 325
            V WNS+I  ++ N++  EAL LF +M+   G  +D  +  S L ACS++G   L HGK 
Sbjct: 266 -VSWNSIIRAHLHNDQPKEALGLFFEMQEACGPRQDRVSYVSALDACSAMGSDGLVHGKT 324

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +HG      +  DV V +AL                               +T+Y  CG 
Sbjct: 325 LHGLILANRIHIDVYVGTAL-------------------------------VTMYGRCGD 353

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           + +AK +F  MP+K+ ++W SMI G S NG   EA+++F  M +   R DK    +V+ A
Sbjct: 354 VVEAKQVFDVMPSKNAVTWTSMIRGYSTNGFAREAVEVFQKMEQEGCRADKIVYVAVMEA 413

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +  +++  ++ +R++ +G  SD  I +SL+  + KCG ++
Sbjct: 414 SRGVEDVKMAAKIHSRLSELGWCSDSAIQSSLIAMHGKCGSVE 456



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 215/500 (43%), Gaps = 115/500 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C++  ++  GK++H   ++ G       + N LL +Y  CG   +A  +F  M
Sbjct: 200 FASVLDACSSAMNLEEGKRIHARIVE-GKFEIDTVVNNTLLDLYGMCGCLEEAKAVFHSM 258

Query: 68  PR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSW-------------- 106
               R+  SWN++I   +     +++L LF  M     P+++  S+              
Sbjct: 259 QEQGRDVVSWNSIIRAHLHNDQPKEALGLFFEMQEACGPRQDRVSYVSALDACSAMGSDG 318

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                    L++ + + G++  A+ +F+ MP +NA+ W SMI  
Sbjct: 319 LVHGKTLHGLILANRIHIDVYVGTALVTMYGRCGDVVEAKQVFDVMPSKNAVTWTSMIRG 378

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y  NGFAREAV +F+++     E  + D  +   V+ A   +  ++   +IHS +   G 
Sbjct: 379 YSTNGFAREAVEVFQKMEQ---EGCRADKIVYVAVMEASRGVEDVKMAAKIHSRLSELGW 435

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             DS + SSL+ ++GK                               CG +  ARRVFD 
Sbjct: 436 CSDSAIQSSLIAMHGK-------------------------------CGSVEAARRVFDA 464

Query: 264 TTDTS--SVMWNSMISGYISNNEDTEALL-LFHKMRRNGVLEDASTLASVLSACSSLGFL 320
             + S  S  WN+MI+ Y S   D EA+L LF  M+   V  D +T   +L+   S    
Sbjct: 465 MEEKSRGSPAWNAMIAAY-SRRGDKEAVLELFQAMQAASVRPDRATFLGLLAVGGSFSPS 523

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E     H                A+L T    GM +D+        +  T LLNT+    
Sbjct: 524 EASAVQH----------------AILST----GMETDS--------LVGTALLNTL---- 551

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +  G++ +A+ +F  +  + ++SW SM+V  + +GS +EA+DLF  M    +  D+ +  
Sbjct: 552 TRSGKVGEARRVFDRLDKRDVVSWTSMMVAYASHGSSLEAIDLFQEMQLQGMEPDEVAFL 611

Query: 441 SVISACANISSLELGEQVFA 460
           +V+ AC +      G   FA
Sbjct: 612 AVLFACNHAGFFRRGWDYFA 631



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/506 (23%), Positives = 218/506 (43%), Gaps = 108/506 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H      G + S + +   L++MY + G   +A  LFD M RR   +W  MI  + 
Sbjct: 118 GREIHRRIQSIGFM-SDVALQTGLIKMYGKFGEVIEARRLFDGMSRRVALTWARMITAYG 176

Query: 84  KLGHKEKSLQLF---NVMPQKNDFSW---------------------------------N 107
           + G   ++++L+   +V+P K  F+                                  N
Sbjct: 177 QNGFGNEAIELYKQIDVVPDKVIFASVLDACSSAMNLEEGKRIHARIVEGKFEIDTVVNN 236

Query: 108 MLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            L+  +   G L+ A+ +F+ M    R+ ++WNS+I  ++ N   +EA+ LF E+     
Sbjct: 237 TLLDLYGMCGCLEEAKAVFHSMQEQGRDVVSWNSIIRAHLHNDQPKEALGLFFEMQEACG 296

Query: 166 ERLQCDAFILATVIGACADLAA--LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            R    +++ A  + AC+ + +  L +GK +H  IL N +  D  +G++LV +YG+CGD 
Sbjct: 297 PRQDRVSYVSA--LDACSAMGSDGLVHGKTLHGLILANRIHIDVYVGTALVTMYGRCGDV 354

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A QV ++M   +    +++I GY+  G        F R                    
Sbjct: 355 VEAKQVFDVMPSKNAVTWTSMIRGYSTNG--------FAR-------------------- 386

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EA+ +F KM + G   D     +V+ A                      ++DV +A+
Sbjct: 387 ---EAVEVFQKMEQEGCRADKIVYVAVMEASRG-------------------VEDVKMAA 424

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
            +    S+ G  S            D+ + +++I ++  CG +E A+ +F  M  KS  S
Sbjct: 425 KIHSRLSELGWCS------------DSAIQSSLIAMHGKCGSVEAARRVFDAMEEKSRGS 472

Query: 404 --WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
             WN+MI   S+ G     L+LF  M    +R D+ +   +++   + S  E    V   
Sbjct: 473 PAWNAMIAAYSRRGDKEAVLELFQAMQAASVRPDRATFLGLLAVGGSFSPSE-ASAVQHA 531

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFI 487
           +   G+++D ++ T+L++   + G +
Sbjct: 532 ILSTGMETDSLVGTALLNTLTRSGKV 557



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 182/457 (39%), Gaps = 113/457 (24%)

Query: 4   RIDYLARLLQSCNTHHS---IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           R+ Y++  L +C+   S   +H GK LH   L   I +  + +   L+ MY RCG+  +A
Sbjct: 301 RVSYVS-ALDACSAMGSDGLVH-GKTLHGLILANRI-HIDVYVGTALVTMYGRCGDVVEA 357

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------- 101
             +FD MP +N  +W +MI G+   G   +++++F  M Q+                   
Sbjct: 358 KQVFDVMPSKNAVTWTSMIRGYSTNGFAREAVEVFQKMEQEGCRADKIVYVAVMEASRGV 417

Query: 102 -------------NDFSW-------NMLISGFAKAGELKTARTLFNDMPR--RNAIAWNS 139
                        ++  W       + LI+   K G ++ AR +F+ M    R + AWN+
Sbjct: 418 EDVKMAAKIHSRLSELGWCSDSAIQSSLIAMHGKCGSVEAARRVFDAMEEKSRGSPAWNA 477

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           MI  Y R G     + LF+ + +  V   +     L  V G+ +   A      +   IL
Sbjct: 478 MIAAYSRRGDKEAVLELFQAMQAASVRPDRATFLGLLAVGGSFSPSEA----SAVQHAIL 533

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             G++ DS++G++L+N   + G                               K+ +ARR
Sbjct: 534 STGMETDSLVGTALLNTLTRSG-------------------------------KVGEARR 562

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VFDR      V W SM+  Y S+    EA+ LF +M+  G+  D     +VL AC+  GF
Sbjct: 563 VFDRLDKRDVVSWTSMMVAYASHGSSLEAIDLFQEMQLQGMEPDEVAFLAVLFACNHAGF 622

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
              G                  AS   D   + G     C                ++ +
Sbjct: 623 FRRGWD--------------YFASMRGDYDLEAGADHYCC----------------VVDL 652

Query: 380 YSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNG 415
               GR+ DA+ +  +MP K    +W++++   + +G
Sbjct: 653 LGRAGRLADAEDLIVSMPFKPDEATWSALVGACNTHG 689


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 256/495 (51%), Gaps = 49/495 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             ++ ++C+   +  VGK ++ + L  G   ++  +   +L M+++CG    A   F+E+
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC-VKGSILDMFIKCGRMDIARRFFEEI 251

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++ F WN M+ G+   G  +K+L+  + M     + +  +WN +ISG+A++G+ + A 
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEAS 311

Query: 124 TLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F +M      + N ++W ++I    +NG+  EA+ +F+++   ++E ++ ++  +A+ 
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM---VLEGVKPNSITIASA 368

Query: 179 IGACADLAALEYGKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           + AC +L+ L +G++IH + I V  LD D ++G+SLV+ Y KC     A +   M+K+ D
Sbjct: 369 VSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTD 428

Query: 238 DFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
               +A+++GYA  G   +A  +      +  +   + WN +++G+    +   AL  F 
Sbjct: 429 LVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQ 488

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M   G+  + +T++  L+AC  +  L+ GK++HG+  +  +     V SAL        
Sbjct: 489 RMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL-------- 540

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                  I++YS C  +E A  +F  +  + ++ WNS+I   +Q
Sbjct: 541 -----------------------ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQ 577

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           +G  + ALDL   MN  ++ ++  ++ S + AC+ +++L  G+++   +   GLD+   I
Sbjct: 578 SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 637

Query: 474 STSLVDFYCKCGFIK 488
             SL+D Y +CG I+
Sbjct: 638 LNSLIDMYGRCGSIQ 652



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 48/427 (11%)

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           +F  + L+  + + G ++ AR +F+ M  RN  +W +++  Y   G   E ++LF  +  
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-- 181

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG- 221
            + E ++ D F+   V  AC++L     GK ++ ++L  G + +S +  S+++++ KCG 
Sbjct: 182 -VNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGR 240

Query: 222 ------------------------------DFNSANQVLNMMK----EPDDFCLSALISG 247
                                         +F  A + ++ MK    +PD    +A+ISG
Sbjct: 241 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG 300

Query: 248 YANCGKMNDARRVFD-----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           YA  G+  +A + F      +    + V W ++I+G   N  D EAL +F KM   GV  
Sbjct: 301 YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP 360

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKL 361
           ++ T+AS +SAC++L  L HG+++HG+  KV  +D D++V ++L+D Y+K      A + 
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSP 417
           F  +K  D +  N M+  Y+  G  E+A  +   M        +I+WN ++ G +Q G  
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
             AL+ F  M+ + +  +  +++  ++AC  + +L+LG+++   V    ++    + ++L
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL 540

Query: 478 VDFYCKC 484
           +  Y  C
Sbjct: 541 ISMYSGC 547



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 166/405 (40%), Gaps = 82/405 (20%)

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R L N   R    +    +H   RNG    A  L   +  DL    +C   I A+++  C
Sbjct: 46  RKLTNARQRITGFSGGGSVH---RNGVLNNAAMLLSSM--DLTNPDECIE-IYASILQKC 99

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
             L  L  G Q+H+ ++VNG+D    LGS L+ +Y + G    A ++ + M E       
Sbjct: 100 RKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE------- 152

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                          R VF          W +++  Y    +  E + LF+ M   GV  
Sbjct: 153 ---------------RNVFS---------WTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 188

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D      V  ACS L     GK V+ +   +G   +  V  ++LD + K G    A + F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248

Query: 363 SELKVYDTILLNTMITVYSS-----------------------------------CGRIE 387
            E++  D  + N M++ Y+S                                    G+ E
Sbjct: 249 EEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFE 308

Query: 388 DAKHIFRTM-------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +A   F  M       PN  ++SW ++I G  QNG   EAL +F  M    ++ +  ++A
Sbjct: 309 EASKYFLEMGGLKDFKPN--VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIA 366

Query: 441 SVISACANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKC 484
           S +SAC N+S L  G ++    + +  LDSD ++  SLVD+Y KC
Sbjct: 367 SAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKC 411



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 118/286 (41%), Gaps = 45/286 (15%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     ++  L +C    ++ +GK++H + L+  I  ST  + + L+ MY  C +   A
Sbjct: 495 MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELST-GVGSALISMYSGCDSLEVA 553

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------ 102
             +F E+  R+   WN++I    + G    +L L   M   N                  
Sbjct: 554 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 103 ---------------------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                +F  N LI  + + G ++ +R +F+ MP+R+ ++WN MI
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y  +GF  +AV LF+   +     L+ +      ++ AC+    +E G +    +   
Sbjct: 674 SVYGMHGFGMDAVNLFQXFRT---MGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 202 -GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 245
             +D      + +V+L  + G FN   + +  M  EP+     +L+
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 49/212 (23%)

Query: 295 MRRNGVLEDASTL----------------ASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           + RNGVL +A+ L                AS+L  C  L  L  G QVH      GV   
Sbjct: 64  VHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV--- 120

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
                             D C+           L + ++ VY   G +EDA+ +F  M  
Sbjct: 121 ------------------DVCEF----------LGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           +++ SW +++      G   E + LF  M    +R D F    V  AC+ + +  +G+ V
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           +  +  IG + +  +  S++D + KCG  +MD
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCG--RMD 242



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 27/238 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   ++  GK++H   ++ G L++   I N L+ MY RCG+   +  +FD MP+R+
Sbjct: 607 LPACSKLAALRQGKEIHQFIIRCG-LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI  +   G    ++ LF        + N  ++  L+S  + +G ++     F 
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 128 DMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M    A+      +  M+    R G   E +   +++        + +A +  +++GAC
Sbjct: 726 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP------FEPNAAVWGSLLGAC 779

Query: 183 -----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 DLA  EY  + +   L      + VL   + N+Y   G +  A ++  +MKE
Sbjct: 780 RIHCNPDLA--EYAAR-YLFELEPQSSGNYVL---MANIYSAAGRWEDAAKIRCLMKE 831


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 237/452 (52%), Gaps = 38/452 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C    S   G+QLH H +  G  +  + + N L+ +Y  CG+   A  +F+E P  
Sbjct: 111 LLQCCAARVSEFEGRQLHAHAVSSG-FDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVL 169

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN ++ G+++ G  E++ ++F  MP++N  + N +I+ F + G ++ AR +FN + 
Sbjct: 170 DLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVR 229

Query: 131 --RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
              R+ ++W++M+ CY +N    EA+ LF E+       +  D  ++ + + AC+ +  +
Sbjct: 230 GRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGS---GVAVDEVVVVSALSACSRVLNV 286

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF-CLSALISG 247
           E G+ +H   +  G++    L ++L++LY  CG+   A ++ +   E  D    +++ISG
Sbjct: 287 EMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISG 346

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y  CG + DA  +F    +   V W++MISGY  +   +EAL LF +M+ +GV  D + L
Sbjct: 347 YLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETAL 406

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            S +SAC+ L  L+ GK +H +  +  +  +VI+++ L+D Y K                
Sbjct: 407 VSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMK---------------- 450

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                          CG +E+A  +F  M  K + +WN++I+GL+ NGS  ++L++F +M
Sbjct: 451 ---------------CGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADM 495

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF 459
            K     ++ +   V+ AC ++  +  G   F
Sbjct: 496 KKTGTVPNEITFMGVLGACRHMGLVNDGRHYF 527



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/410 (32%), Positives = 219/410 (53%), Gaps = 42/410 (10%)

Query: 125 LFNDMPRRNAIAWNSMI--HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           +FN +   N   WN+++  H Y++N    +A+  +K     L    + D++    ++  C
Sbjct: 60  IFNHLRNPNTFTWNTIMRAHLYLQNS-PHQALLHYKLF---LASHAKPDSYTYPILLQCC 115

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A   +   G+Q+H+H + +G D D  + ++L+NLY  CG   SA +V       D    +
Sbjct: 116 AARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWN 175

Query: 243 ALISGYANCGKMNDARRVFD---------------------------------RTTDTSS 269
            L++GY   G++ +A RVF+                                 R  +   
Sbjct: 176 TLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDM 235

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V W++M+S Y  N    EAL+LF +M+ +GV  D   + S LSACS +  +E G+ VHG 
Sbjct: 236 VSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGL 295

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIED 388
           A KVGV D V + +AL+  YS  G   DA ++F +  ++ D I  N+MI+ Y  CG I+D
Sbjct: 296 AVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQD 355

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F +MP K ++SW++MI G +Q+    EAL LF  M    +R D+ +L S ISAC +
Sbjct: 356 AEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTH 415

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK--MDEYYLMQ 496
           +++L+LG+ + A ++   L  + I+ST+L+D Y KCG ++  ++ +Y M+
Sbjct: 416 LATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAME 465



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 118/263 (44%), Gaps = 34/263 (12%)

Query: 259 RVFDRTTDTSSVMWNSMISGYIS-NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R+F+   + ++  WN+++  ++   N   +ALL +     +    D+ T   +L  C++ 
Sbjct: 59  RIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAAR 118

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
                G+Q+H HA   G   DV V + L++ Y+  G    A ++F E  V D +  NT++
Sbjct: 119 VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLL 178

Query: 378 TVYSSCGRIEDAKHIFRTMPNKS---------------------------------LISW 404
             Y   G +E+A+ +F  MP ++                                 ++SW
Sbjct: 179 AGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSW 238

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           ++M+    QN    EAL LF  M    + +D+  + S +SAC+ + ++E+G  V      
Sbjct: 239 SAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVK 298

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
           +G++    +  +L+  Y  CG I
Sbjct: 299 VGVEDYVSLKNALIHLYSSCGEI 321


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 256/495 (51%), Gaps = 49/495 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             ++ ++C+   +  VGK ++ + L  G   ++  +   +L M+++CG    A   F+E+
Sbjct: 193 FPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC-VKGSILDMFIKCGRMDIARRFFEEI 251

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++ F WN M+ G+   G  +K+L+  + M     + +  +WN +ISG+A++G+ + A 
Sbjct: 252 EFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEAS 311

Query: 124 TLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F +M      + N ++W ++I    +NG+  EA+ +F+++   ++E ++ ++  +A+ 
Sbjct: 312 KYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM---VLEGVKPNSITIASA 368

Query: 179 IGACADLAALEYGKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           + AC +L+ L +G++IH + I V  LD D ++G+SLV+ Y KC     A +   M+K+ D
Sbjct: 369 VSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTD 428

Query: 238 DFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
               +A+++GYA  G   +A  +      +  +   + WN +++G+    +   AL  F 
Sbjct: 429 LVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQ 488

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M   G+  + +T++  L+AC  +  L+ GK++HG+  +  +     V SAL        
Sbjct: 489 RMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL-------- 540

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                  I++YS C  +E A  +F  +  + ++ WNS+I   +Q
Sbjct: 541 -----------------------ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQ 577

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           +G  + ALDL   MN  ++ ++  ++ S + AC+ +++L  G+++   +   GLD+   I
Sbjct: 578 SGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 637

Query: 474 STSLVDFYCKCGFIK 488
             SL+D Y +CG I+
Sbjct: 638 LNSLIDMYGRCGSIQ 652



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 48/427 (11%)

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           +F  + L+  + + G ++ AR +F+ M  RN  +W +++  Y   G   E ++LF  +  
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-- 181

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG- 221
            + E ++ D F+   V  AC++L     GK ++ ++L  G + +S +  S+++++ KCG 
Sbjct: 182 -VNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGR 240

Query: 222 ------------------------------DFNSANQVLNMMK----EPDDFCLSALISG 247
                                         +F  A + ++ MK    +PD    +A+ISG
Sbjct: 241 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG 300

Query: 248 YANCGKMNDARRVFD-----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           YA  G+  +A + F      +    + V W ++I+G   N  D EAL +F KM   GV  
Sbjct: 301 YAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKP 360

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKL 361
           ++ T+AS +SAC++L  L HG+++HG+  KV  +D D++V ++L+D Y+K      A + 
Sbjct: 361 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 420

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSP 417
           F  +K  D +  N M+  Y+  G  E+A  +   M        +I+WN ++ G +Q G  
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
             AL+ F  M+ + +  +  +++  ++AC  + +L+LG+++   V    ++    + ++L
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSAL 540

Query: 478 VDFYCKC 484
           +  Y  C
Sbjct: 541 ISMYSGC 547



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 166/405 (40%), Gaps = 82/405 (20%)

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R L N   R    +    +H   RNG    A  L   +  DL    +C   I A+++  C
Sbjct: 46  RKLTNARQRITGFSGGGSVH---RNGVLNNAAMLLSSM--DLTNPDECIE-IYASILQKC 99

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
             L  L  G Q+H+ ++VNG+D    LGS L+ +Y + G    A ++ + M E       
Sbjct: 100 RKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE------- 152

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                          R VF          W +++  Y    +  E + LF+ M   GV  
Sbjct: 153 ---------------RNVFS---------WTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 188

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D      V  ACS L     GK V+ +   +G   +  V  ++LD + K G    A + F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248

Query: 363 SELKVYDTILLNTMITVYSS-----------------------------------CGRIE 387
            E++  D  + N M++ Y+S                                    G+ E
Sbjct: 249 EEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFE 308

Query: 388 DAKHIFRTM-------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +A   F  M       PN  ++SW ++I G  QNG   EAL +F  M    ++ +  ++A
Sbjct: 309 EASKYFLEMGGLKDFKPN--VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIA 366

Query: 441 SVISACANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKC 484
           S +SAC N+S L  G ++    + +  LDSD ++  SLVD+Y KC
Sbjct: 367 SAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKC 411



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 119/286 (41%), Gaps = 45/286 (15%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD     ++  L +C    ++ +GK++H + L+  I  ST  + + L+ MY  C +   A
Sbjct: 495 MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELST-GVGSALISMYSGCDSLEVA 553

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------ 102
             +F E+  R+   WN++I    + G    +L L   M   N                  
Sbjct: 554 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 103 ---------------------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                +F  N LI  + + G ++ +R +F+ MP+R+ ++WN MI
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y  +GF  +AV LF++  +     L+ +      ++ AC+    +E G +    +   
Sbjct: 674 SVYGMHGFGMDAVNLFQQFRT---MGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 202 -GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 245
             +D      + +V+L  + G FN   + +  M  EP+     +L+
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 49/212 (23%)

Query: 295 MRRNGVLEDASTL----------------ASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           + RNGVL +A+ L                AS+L  C  L  L  G QVH      GV   
Sbjct: 64  VHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV--- 120

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
                             D C+           L + ++ VY   G +EDA+ +F  M  
Sbjct: 121 ------------------DVCEF----------LGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           +++ SW +++      G   E + LF  M    +R D F    V  AC+ + +  +G+ V
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           +  +  IG + +  +  S++D + KCG  +MD
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCG--RMD 242



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 27/238 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   ++  GK++H   ++ G L++   I N L+ MY RCG+   +  +FD MP+R+
Sbjct: 607 LPACSKLAALRQGKEIHQFIIRCG-LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI  +   G    ++ LF        + N  ++  L+S  + +G ++     F 
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 128 DMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M    A+      +  M+    R G   E +   +++        + +A +  +++GAC
Sbjct: 726 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP------FEPNAAVWGSLLGAC 779

Query: 183 -----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 DLA  EY  + +   L      + VL   + N+Y   G +  A ++  +MKE
Sbjct: 780 RIHCNPDLA--EYAAR-YLFELEPQSSGNYVL---MANIYSAAGRWEDAAKIRCLMKE 831


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/568 (26%), Positives = 267/568 (47%), Gaps = 118/568 (20%)

Query: 1   MDTRIDYLARLLQSCNTHH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
            D RI   A +L+ C+ +  S    +Q+H   +  G  +ST  I N L+ +Y + G  + 
Sbjct: 161 FDERI--FAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTF-ICNPLIDLYFKNGFLSS 217

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF--------------------NVMP 99
           A  +F+ +  R+  SW AMI G  + G++E+++ LF                    + + 
Sbjct: 218 AKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLV 277

Query: 100 QKNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
            K  FS      N L++ ++++G L +A  +F+ M +R+ +++NS+I    + G+   A+
Sbjct: 278 LKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRAL 337

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            LFK++N D  +    D   +A+++ ACA + AL  GKQ HS+ +  G+  D V+  SL+
Sbjct: 338 ALFKKMNLDCQKP---DCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLL 394

Query: 215 NLYGKCGDFNSAN----------------QVLNMMK----EPDDFCL------------- 241
           +LY KC D  +A+                Q+   M+     P+ F               
Sbjct: 395 DLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGAT 454

Query: 242 ----------------------SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                 S LI  YA  GK++ A ++F R  +   V W +MI+GY
Sbjct: 455 DLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGY 514

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             +++ TEAL LF +M+  G+  D    AS +SAC+ +  L+ G+Q+H  +C  G  DD+
Sbjct: 515 TQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDL 574

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            + +AL+  Y++ G   +A   F ++   D +  N++++ ++  G  E+A          
Sbjct: 575 SIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEA---------- 624

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
                                L++F  MNK  L ++ F+  S +SA ANI+++ +G+Q+ 
Sbjct: 625 ---------------------LNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIH 663

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +   G DS+  +S +L+  Y KCG I
Sbjct: 664 GMIRKTGYDSETEVSNALITLYAKCGTI 691



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 145/567 (25%), Positives = 238/567 (41%), Gaps = 145/567 (25%)

Query: 18  HHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
            H +    Q  L +L +G LNS +     +L+  Y+  G+   A+ +FDEMP R+   WN
Sbjct: 74  QHGVRANSQTFL-WLLEGCLNSRSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWN 132

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKN---------------------------------- 102
            +   F+      +   LF  M  KN                                  
Sbjct: 133 RIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTIT 192

Query: 103 ------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL 156
                  F  N LI  + K G L +A+ +F ++  R++++W +MI    +NG+  EA+ L
Sbjct: 193 SGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLL 252

Query: 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216
           F ++                 V+ AC  +   E+GKQ+H  +L  G              
Sbjct: 253 FCQI-----------------VLSACTKVEFFEFGKQLHGLVLKQG-------------- 281

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
                 F+S   V N           AL++ Y+  G ++ A ++F   +    V +NS+I
Sbjct: 282 ------FSSETYVCN-----------ALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLI 324

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           SG         AL LF KM  +    D  T+AS+LSAC+S+G L +GKQ H +A K G+ 
Sbjct: 325 SGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMT 384

Query: 337 DDVIVASALLD----------------TYSKRGMPSDACKLFSELKV---------YDTI 371
            D++V  +LLD                 Y +    + + ++F+++++         Y +I
Sbjct: 385 SDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSI 444

Query: 372 LL------------------------------NTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           L                               + +I +Y+  G+++ A  IFR +    +
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           +SW +MI G +Q+    EAL+LF  M    ++ D    AS ISACA I +L+ G Q+ A+
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQ 564

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
             + G   D  I  +LV  Y +CG ++
Sbjct: 565 SCLSGYSDDLSIGNALVSLYARCGKVR 591



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/477 (26%), Positives = 219/477 (45%), Gaps = 105/477 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG------------ 55
           +A LL +C +  ++  GKQ H + +K G + S + +   LL +Y++C             
Sbjct: 355 VASLLSACASVGALPNGKQFHSYAIKAG-MTSDIVVEGSLLDLYVKCSDIKTAHEFFLCY 413

Query: 56  ----NPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN 107
               N   +  +F +M       N F++ ++++    LG  +   Q+ +    K  F +N
Sbjct: 414 GQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQI-HTQVLKTGFQFN 472

Query: 108 MLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           + +S      +AK G+L  A  +F  +   + ++W +MI  Y ++    EA+ LFKE+  
Sbjct: 473 VYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQD 532

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
              + ++ D    A+ I ACA + AL+ G+QIH+   ++G   D  +G++LV+LY     
Sbjct: 533 ---QGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLY----- 584

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                     A CGK+ +A   FD+     +V WNS++SG+  +
Sbjct: 585 --------------------------ARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQS 618

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               EAL +F +M + G+  ++ T  S +SA +++  +  GKQ+HG   K G   +  V+
Sbjct: 619 GYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVS 678

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +AL                               IT+Y+ CG I+D             I
Sbjct: 679 NAL-------------------------------ITLYAKCGTIDD-------------I 694

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           SWNSMI G SQ+G   EAL LF +M +LD+  +  +   V+SAC+++  ++ G   F
Sbjct: 695 SWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYF 751



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 178/388 (45%), Gaps = 81/388 (20%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  +   G+L  A  +F++MP R+   WN + + ++          LF+ +   L + +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM---LTKNV 159

Query: 169 QCDAFILATVIGACA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           + D  I A V+  C+ +  +  + +QIH+  + +G +  + + + L++LY K G  +SA 
Sbjct: 160 EFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSA- 218

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                         ++VF+      SV W +MISG   N  + E
Sbjct: 219 ------------------------------KKVFENLKARDSVSWVAMISGLSQNGYEEE 248

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+LLF ++              VLSAC+ + F E GKQ+HG   K G             
Sbjct: 249 AMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQG------------- 281

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
                         FS     +T + N ++T+YS  G +  A+ IF  M  +  +S+NS+
Sbjct: 282 --------------FSS----ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSL 323

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I GL+Q G    AL LF  MN    + D  ++AS++SACA++ +L  G+Q  +     G+
Sbjct: 324 ISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGM 383

Query: 468 DSDQIISTSLVDFYCKCGFIKM-DEYYL 494
            SD ++  SL+D Y KC  IK   E++L
Sbjct: 384 TSDIVVEGSLLDLYVKCSDIKTAHEFFL 411



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 30/225 (13%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ +GKQ+H    K G  +S   ++N L+ +Y +CG   D              SWN+MI
Sbjct: 655 NVRIGKQIHGMIRKTG-YDSETEVSNALITLYAKCGTIDD-------------ISWNSMI 700

Query: 80  EGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPR-RNA 134
            G+ + G   ++L+LF  M Q     N  ++  ++S  +  G +    + F  M    N 
Sbjct: 701 TGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNL 760

Query: 135 IAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           +       C V    R+G    A R  +E+       +Q DA +  T++ AC     ++ 
Sbjct: 761 VPKPEHYACVVDLLGRSGLLSRAKRFVEEM------PIQPDAMVWRTLLSACNVHKNIDI 814

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           G+   SH+L      DS     + N+Y   G ++  ++   MMK+
Sbjct: 815 GEFAASHLLELEPK-DSATYVLVSNMYAVSGKWDCRDRTRQMMKD 858


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 244/487 (50%), Gaps = 45/487 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C     +  G Q+H H +K G  +  L + N L+ MY  CG    A  +FD  P  
Sbjct: 112 LAAACAARGDVREGLQVHSHSVKHG-FSDNLYLRNALMHMYSACGCVASARRVFDAGPVW 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN ++  +++ G  E+++++F  MP+++  + + +++ FA+ G ++ AR +F+   
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAE 230

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+A  W +M+ C+ RN    EA+ +F ++     E    D  ++ +V+ ACA    ++ 
Sbjct: 231 HRDAFTWTAMVSCFERNDLFMEALAVFSDMRE---EGWPVDEAVMVSVVAACAKSGVIQN 287

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+  H  ++  GL     + + L+++Y  C D  +A ++ +  +  D F  +++ISGY  
Sbjct: 288 GEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLK 347

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G++ DA+ +FD   D  +V W++MI+G + NN+ +EAL +F  MR + +  D  TL SV
Sbjct: 348 NGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSV 407

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SACS+L  LE GK VH +  K      +++ ++L+D Y K                   
Sbjct: 408 ISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMK------------------- 448

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +E A  +F  +  K    WN++IVGL+ NG    +LD+F  M   
Sbjct: 449 ------------CGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEAT 496

Query: 431 DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKC 484
              + ++ +   V+SAC +   +E G Q F  +     +  QI+        +VD   + 
Sbjct: 497 GTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQ----NKYQIVPNIRHYGCMVDLLGRA 552

Query: 485 GFIKMDE 491
           G+++  E
Sbjct: 553 GYVREAE 559



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 186/392 (47%), Gaps = 37/392 (9%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  +   NA   N+++   +R GF      L+  + +        D +    +  ACA 
Sbjct: 65  LFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPA------APDTYTHPLLAAACAA 118

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
              +  G Q+HSH + +G   +  L ++L+++Y  CG   SA +V +     D    + +
Sbjct: 119 RGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTI 178

Query: 245 ISGY-------------------------------ANCGKMNDARRVFDRTTDTSSVMWN 273
           ++ Y                               A  G + +AR VFD      +  W 
Sbjct: 179 LATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWT 238

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +M+S +  N+   EAL +F  MR  G   D + + SV++AC+  G +++G+  HG   + 
Sbjct: 239 AMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRA 298

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G+   V V + L+  YS       A +LF   +  D    N+MI+ Y   GR+EDAK +F
Sbjct: 299 GLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALF 358

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP+K  +SW++MI G   N    EAL++F +M   +++ D  +L SVISAC+N+S+LE
Sbjct: 359 DVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALE 418

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            G+ V   +     +   ++ TSL+D Y KCG
Sbjct: 419 QGKLVHEYIRKYQYNITIVLGTSLIDMYMKCG 450



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 128/323 (39%), Gaps = 58/323 (17%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH+  L +GL  D+   S L+        F ++     ++  P                
Sbjct: 22  QIHAQFLASGLLADAYAASRLLL-------FTTSATAARLLPHP---------------- 58

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            ++ + ++F      ++   N+++   +          L+  M       D  T   + +
Sbjct: 59  -LHHSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMP---AAPDTYTHPLLAA 114

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC++ G +  G QVH H+ K G  D++ + +AL+  YS  G  + A ++F    V+D + 
Sbjct: 115 ACAARGDVREGLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVS 174

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMP-------------------------------NKSL 401
            NT++  Y   G +E A  +F  MP                               ++  
Sbjct: 175 WNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDA 234

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
            +W +M+    +N   +EAL +F +M +    +D+  + SV++ACA    ++ GE     
Sbjct: 235 FTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGL 294

Query: 462 VTIIGLDSDQIISTSLVDFYCKC 484
           V   GL S   +   L+  Y  C
Sbjct: 295 VVRAGLGSRVNVQNVLIHMYSSC 317


>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
 gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
          Length = 694

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/528 (28%), Positives = 248/528 (46%), Gaps = 79/528 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +LA LL++C++   +  GKQ+H       +L S +P+AN ++ MY +C     A+ +
Sbjct: 10  RVTFLA-LLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAV 68

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSWNM--------- 108
           F EM  R+  SWN  I    + G         KS+QL  + P K  F   +         
Sbjct: 69  FSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSL 128

Query: 109 ------------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                   L++ + + G L++AR +F+ MP RN ++WN+M+   
Sbjct: 129 SNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASC 188

Query: 145 VRNGFAREAVRLFKELNS-DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
             N    EA+ LFK + +  +VE  +  +FI  TV+ A     AL  G++IH  I    L
Sbjct: 189 TLNAHFAEAIELFKRMVAVAMVEPTRV-SFI--TVLNAVTTREALAEGRRIHEMIQERQL 245

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
                + ++LV +YG+CG    A +V + M+  D    +A+IS YA  G   +   +F R
Sbjct: 246 LSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLACEVVNLFHR 305

Query: 264 TTDTSS------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
                S      + WN+MI+GY+   +   AL +F +M   G+  +  T  S+LS C S 
Sbjct: 306 MRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSR 365

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G+ +H   C   VID     S+                        D I+   ++
Sbjct: 366 ALLRQGETIH--RC---VIDQTPELSS------------------------DPIVAAAIV 396

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
            +Y  CG ++ A+H+F    +++L SWNSMI   + +G   +A DL   M +  +  D+ 
Sbjct: 397 NMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRV 456

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  ++++AC    ++  G+ + AR+   GL+ D +++ +LV+FY KCG
Sbjct: 457 TFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCG 504



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/501 (24%), Positives = 218/501 (43%), Gaps = 107/501 (21%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR+ ++  +L +  T  ++  G+++H    ++ +L S + +AN L+ MY RCG   DA  
Sbjct: 213 TRVSFIT-VLNAVTTREALAEGRRIHEMIQERQLL-SQIEVANALVTMYGRCGGVGDAE- 269

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
                                         ++F+ M +++  SWN +IS +A++G     
Sbjct: 270 ------------------------------RVFSAMERRDLVSWNAMISAYAQSGLACEV 299

Query: 123 RTLFN------DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             LF+       M  R+ I+WN+MI  YV+ G    A+ +FK +   L+E ++ +     
Sbjct: 300 VNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRM---LLEGIRGNQVTFM 356

Query: 177 TVIGACADLAALEYGKQIHSHIL--VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +++  C   A L  G+ IH  ++     L  D ++ +++VN+YGK               
Sbjct: 357 SLLSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGK--------------- 401

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                           CG+++ AR +F+ T+  +   WNSMIS Y  +    +A  L  +
Sbjct: 402 ----------------CGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSER 445

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           MRR GVL D  T  ++L+AC + G +  GK +H      G+  D +VA+AL         
Sbjct: 446 MRREGVLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANAL--------- 496

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                 +  YS CG ++ A  +F  +  + ++SWN +I G + N
Sbjct: 497 ----------------------VNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHN 534

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQII 473
           G   EAL     M +  +R D  +  +++SA ++   L  G   F  + +   L+     
Sbjct: 535 GHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEH 594

Query: 474 STSLVDFYCKCGFIKMDEYYL 494
              ++D   + G I   EY++
Sbjct: 595 YGCMIDLLGRAGRIGEAEYFV 615



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 32/184 (17%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSE 364
           T  ++L AC S  FLE GKQ+H     + +++ DV VA+A++  Y K             
Sbjct: 12  TFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRK------------- 58

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             C R + A  +F  M  + LISWN+ I   +++G     L L 
Sbjct: 59  ------------------CERADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALL 100

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +M    +  DK +  S ++AC    SL  G  + A V   G++ D ++ T+LV  Y +C
Sbjct: 101 KSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRC 160

Query: 485 GFIK 488
           G ++
Sbjct: 161 GCLE 164



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 18/228 (7%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ ++  LL +C    ++  GK +H   +  G+   T+ +AN L+  Y +CGN   A  L
Sbjct: 455 RVTFIT-LLNACVAGGAVRQGKMIHARIIDSGLEKDTV-VANALVNFYSKCGNLDTATSL 512

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGEL 119
           F  +  R+  SWN +I GF   GH  ++L+   +M Q     +  ++  ++S  + AG L
Sbjct: 513 FGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFL 572

Query: 120 KTARTLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           +     F  M       R    +  MI    R G   EA      +  +  E        
Sbjct: 573 RQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGEAEYFVSAMRDEDKE------VS 626

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
             T++ AC      E  K++   I+       S    +L NLY  CGD
Sbjct: 627 WMTLLSACEVHGDEERAKRVAGSIVEMNPQHSSAY-VALSNLYATCGD 673


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/523 (28%), Positives = 250/523 (47%), Gaps = 80/523 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFD 65
           L  LL++C +   +   +Q+H   +KKG LN+   + NR++        G+   A  LFD
Sbjct: 21  LISLLETCESMDQL---QQVHCQAIKKG-LNANPVLQNRVMTFCCTHEYGDFQYARRLFD 76

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK------ 115
           E+P  N F WN MI G+ +L   +  + L+  M ++    + +++  L  GF +      
Sbjct: 77  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 136

Query: 116 -----------------------------AGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                                         G+L TAR +F+  P+ + I WN +I  Y +
Sbjct: 137 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 196

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G   E+ RLF  +     +++      L  V+ AC+ L  L  GK++HS++    ++ +
Sbjct: 197 VGKFEESRRLFLVMED---KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 253

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            VL ++++++Y  CG+ +SA  +   M   D    + ++SG+ N G+++ AR  FD+  +
Sbjct: 254 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 313

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W +MI GYI +N   EAL LF  M+   V  D  T+ SVL+AC+ LG LE G+ +
Sbjct: 314 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI 373

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
             +  +  + +D+ V +AL+D Y K                               CG +
Sbjct: 374 RTYIDRNKIKNDLFVRNALIDMYFK-------------------------------CGDV 402

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + A+ IFR M  +   +W +MIVGL+ NG   +ALD+F NM K  +  D+ +   V+SAC
Sbjct: 403 DKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 462

Query: 447 ANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIK 488
            +   ++ G + F R+T   G++ +      LVD   + G +K
Sbjct: 463 THTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 505



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 160/362 (44%), Gaps = 70/362 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NAMI+ +   G  + +L +F  M  ++  SW  ++SGF   GE+  AR  F+ MP ++ +
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 317

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W +MI  Y+R+   +EA+ LF+ + +  V   + D F + +V+ ACA L ALE G+ I 
Sbjct: 318 SWTAMIDGYIRSNRFKEALELFRNMQATNV---KPDEFTMVSVLTACAHLGALELGEWIR 374

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++I                            N++ N     D F  +ALI  Y  CG ++
Sbjct: 375 TYI--------------------------DRNKIKN-----DLFVRNALIDMYFKCGDVD 403

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  +F   +      W +MI G   N    +AL +F  M +  +L D  T   VLSAC+
Sbjct: 404 KAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACT 463

Query: 316 SLGFLEHGKQV-------HG-------HACKVG-------------VIDDV------IVA 342
             G ++ G++        HG       + C V              VI+++      IV 
Sbjct: 464 HTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVW 523

Query: 343 SALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            ALL     Y +  M     K   EL+  +  +   +  +Y++C R  D + + + M +K
Sbjct: 524 GALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDK 583

Query: 400 SL 401
            +
Sbjct: 584 GI 585


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 231/464 (49%), Gaps = 46/464 (9%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF-----SWNAMIEGFMKLGHKEK 90
           I N     +N+LL+ + R   P + L L+  + RRN F     S+  +++   KL     
Sbjct: 75  IPNPPTRFSNQLLRQFSRGPTPENTLSLYLHL-RRNGFPLDRFSFPPLLKAVSKLSALNL 133

Query: 91  SLQLFNVMPQ-----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
            L++  +  +      + F  + LI+ +A  G +  AR LF+ M  R+ + WN MI  Y 
Sbjct: 134 GLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYS 193

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +N      ++L++E+ +   E    DA IL TV+ ACA    L YGK IH  I  NG   
Sbjct: 194 QNAHYDHVLKLYEEMKTSGTEP---DAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRV 250

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
            S + +SLVN+Y  CG  + A +V + +        +A++SGYA  G + DAR +FDR  
Sbjct: 251 GSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMV 310

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           +   V W++MISGY  + +  EAL LF++M+R  ++ D  T+ SV+SAC+++G L   K 
Sbjct: 311 EKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKW 370

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H +A K G    + + +AL+D Y+K                               CG 
Sbjct: 371 IHTYADKNGFGRTLPINNALIDMYAK-------------------------------CGN 399

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +  A+ +F  MP K++ISW+SMI   + +G    A+ LF  M + ++  +  +   V+ A
Sbjct: 400 LVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYA 459

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGFIK 488
           C++   +E G++ F+ +      S Q      +VD YC+   ++
Sbjct: 460 CSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLR 503


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 240/474 (50%), Gaps = 45/474 (9%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+Q+H H +K G     L + N L+ MY  CG    A  +FD  P  +  SWN ++  ++
Sbjct: 125 GRQVHSHAVKHG-FGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYV 183

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           + G  E+++ +F  MP+++  + + +++ FA+ G ++ AR +F+    R+A  W +MI C
Sbjct: 184 RDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISC 243

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           + RN    EA+ +F ++     E    D  ++ +V+ ACA    ++ G+  H  ++  GL
Sbjct: 244 FERNDLFVEALAVFSDMRE---EGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGL 300

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
                + ++L+++Y  C D  +A ++ +  +  D F  +++ISGY   G++ DA+ +F+ 
Sbjct: 301 GSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNV 360

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             D  +V W++MI+G + NN+ +EAL +F  MR + +  D  TL SV+SAC++L  LE G
Sbjct: 361 MPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQG 420

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K VH +  +      +++ ++L+D Y K                               C
Sbjct: 421 KLVHEYIRQYQYNITIVLGTSLIDMYMK-------------------------------C 449

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASV 442
           G +E A  +F  +  K    WN++IVGL+ NG    +LD+F  M    + +  + +   V
Sbjct: 450 GCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEITFTGV 509

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKCGFIKMDE 491
           +SAC +   +E G Q F  +     +  QII        +VD   + G+++  E
Sbjct: 510 LSACRHGGLVEEGRQFFKLMQ----NKYQIIPNIRHYGCMVDLLGRAGYVREAE 559



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/400 (30%), Positives = 195/400 (48%), Gaps = 16/400 (4%)

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR-NGF 149
           SLQLF ++   N F+ N LI    + G       L+  MP       + ++       G 
Sbjct: 62  SLQLFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASMPAAPDTYTHPLLAAACAARGD 121

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVI----GACADLAALEYGKQIHSHILVNGLDF 205
           ARE     ++++S  V+    D   L   +     AC  +A           +   G  +
Sbjct: 122 AREG----RQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGAR-------RVFDAGPVW 170

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+V  ++++  Y + GD   A  V   M E     +S++++ +A  G + +AR VFD   
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAE 230

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
              +  W +MIS +  N+   EAL +F  MR  G   D + + SV++AC+    +++G+ 
Sbjct: 231 HRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEV 290

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            HG   + G+   V V +AL+  YS       A +LF   +  D    N+MI+ Y   GR
Sbjct: 291 CHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGR 350

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +EDAK +F  MP+K  +SW++MI G  QN    EAL +F NM   +++ D+ +L SVISA
Sbjct: 351 VEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISA 410

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           C N+ +LE G+ V   +     +   ++ TSL+D Y KCG
Sbjct: 411 CTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCG 450


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/523 (28%), Positives = 250/523 (47%), Gaps = 80/523 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFD 65
           L  LL++C +   +   +Q+H   +KKG LN+   + NR++        G+   A  LFD
Sbjct: 42  LISLLETCESMDQL---QQVHCQAIKKG-LNANPVLQNRVMTFCCTHEYGDFQYARRLFD 97

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAK------ 115
           E+P  N F WN MI G+ +L   +  + L+  M ++    + +++  L  GF +      
Sbjct: 98  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 157

Query: 116 -----------------------------AGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                                         G+L TAR +F+  P+ + I WN +I  Y +
Sbjct: 158 GRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 217

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G   E+ RLF  +     +++      L  V+ AC+ L  L  GK++HS++    ++ +
Sbjct: 218 VGKFEESRRLFLVMED---KQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 274

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            VL ++++++Y  CG+ +SA  +   M   D    + ++SG+ N G+++ AR  FD+  +
Sbjct: 275 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 334

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W +MI GYI +N   EAL LF  M+   V  D  T+ SVL+AC+ LG LE G+ +
Sbjct: 335 KDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWI 394

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
             +  +  + +D+ V +AL+D Y K                               CG +
Sbjct: 395 RTYIDRNKIKNDLFVRNALIDMYFK-------------------------------CGDV 423

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + A+ IFR M  +   +W +MIVGL+ NG   +ALD+F NM K  +  D+ +   V+SAC
Sbjct: 424 DKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSAC 483

Query: 447 ANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIK 488
            +   ++ G + F R+T   G++ +      LVD   + G +K
Sbjct: 484 THTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 526



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 160/362 (44%), Gaps = 70/362 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NAMI+ +   G  + +L +F  M  ++  SW  ++SGF   GE+  AR  F+ MP ++ +
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 338

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W +MI  Y+R+   +EA+ LF+ + +  V   + D F + +V+ ACA L ALE G+ I 
Sbjct: 339 SWTAMIDGYIRSNRFKEALELFRNMQATNV---KPDEFTMVSVLTACAHLGALELGEWIR 395

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++I                            N++ N     D F  +ALI  Y  CG ++
Sbjct: 396 TYI--------------------------DRNKIKN-----DLFVRNALIDMYFKCGDVD 424

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  +F   +      W +MI G   N    +AL +F  M +  +L D  T   VLSAC+
Sbjct: 425 KAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACT 484

Query: 316 SLGFLEHGKQV-------HG-------HACKVG-------------VIDDV------IVA 342
             G ++ G++        HG       + C V              VI+++      IV 
Sbjct: 485 HTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVW 544

Query: 343 SALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            ALL     Y +  M     K   EL+  +  +   +  +Y++C R  D + + + M +K
Sbjct: 545 GALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDK 604

Query: 400 SL 401
            +
Sbjct: 605 GI 606


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 206/398 (51%), Gaps = 39/398 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF+ M ++++ SW  +I+G+ + GEL  AR   + M  +  +AWN+MI  YV +GF  E
Sbjct: 215 KLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLE 274

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN----GLDFDSV 208
           A+ +F+++    +  +Q D F   +V+ ACA+     +GKQ+H++IL       LDF   
Sbjct: 275 ALEMFRKM---YLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLS 331

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L  LY KCG  + A QV N M   D    +A++SGY N G++++A+  F+   + +
Sbjct: 332 VNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERN 391

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W  MISG   N    E+L LF++M+  G        A  + AC+ L  L HG+Q+H 
Sbjct: 392 LLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHA 451

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              ++G  D  + A                               N +IT+Y+ CG +E 
Sbjct: 452 QLVRLG-FDSSLSAG------------------------------NALITMYAKCGVVEA 480

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F TMP    +SWN+MI  L Q+G   +AL+LF  M K D+  D+ +  +V+S C++
Sbjct: 481 AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSH 540

Query: 449 ISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG 485
              +E G + F  ++ + G+   +     ++D  C+ G
Sbjct: 541 AGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAG 578



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/498 (29%), Positives = 243/498 (48%), Gaps = 53/498 (10%)

Query: 9   ARLLQSCNTHH--SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           A  LQ C  H+  S  + + +H H +  G       I NRL+ +Y +  +   A  LFDE
Sbjct: 17  AAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGY-ILNRLIDVYCKSSDLVSAHHLFDE 75

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +                                Q +  +   LI+  + AG    AR +F
Sbjct: 76  IR-------------------------------QPDIVARTTLIAAHSSAGNSNLAREIF 104

Query: 127 NDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
              P   R+ + +N+MI  Y  N     A+ LF++L   L    + D F   +V+GA A 
Sbjct: 105 FATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL---LRNGFRPDNFTFTSVLGALAL 161

Query: 185 LAALEYG-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---------FNSANQVLNMMK 234
           +   E   +QIH  ++ +G  F + + ++L++++ KC             +A ++ + M 
Sbjct: 162 IVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMT 221

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           E D+   + +I+GY   G+++ AR+  D  T+   V WN+MISGY+ +    EAL +F K
Sbjct: 222 ERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRK 281

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV----GVIDDVIVASALLDTYS 350
           M   G+  D  T  SVLSAC++ GF  HGKQVH +  +      +   + V +AL   Y 
Sbjct: 282 MYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYW 341

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G   +A ++F+++ V D +  N +++ Y + GRI++AK  F  MP ++L++W  MI G
Sbjct: 342 KCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISG 401

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           L+QNG   E+L LF  M         ++ A  I ACA +++L  G Q+ A++  +G DS 
Sbjct: 402 LAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSS 461

Query: 471 QIISTSLVDFYCKCGFIK 488
                +L+  Y KCG ++
Sbjct: 462 LSAGNALITMYAKCGVVE 479



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 159/317 (50%), Gaps = 18/317 (5%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            + +H+H++ +G      + + L+++Y K  D  SA+ + + +++PD    + LI+ +++
Sbjct: 34  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 93

Query: 251 CGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
            G  N AR +F  T      +V +N+MI+GY  NN+   A+ LF  + RNG   D  T  
Sbjct: 94  AGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFT 153

Query: 309 SVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMP---------SDA 358
           SVL A + +   E   +Q+H    K G      V +ALL  + K             + A
Sbjct: 154 SVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAA 213

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
            KLF E+   D +   TMI  Y   G ++ A+     M  K +++WN+MI G   +G  +
Sbjct: 214 RKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFL 273

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII----GLDSDQIIS 474
           EAL++F  M  L ++ D+F+  SV+SACAN      G+QV A +        LD    ++
Sbjct: 274 EALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVN 333

Query: 475 TSLVDFYCKCGFIKMDE 491
            +L   Y KCG  K+DE
Sbjct: 334 NALATLYWKCG--KVDE 348



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 171/385 (44%), Gaps = 76/385 (19%)

Query: 24  GKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           GKQ+H + L+   +  L+ +L + N L  +Y +CG   +A  +F++MP ++  SWNA++ 
Sbjct: 310 GKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILS 369

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G++  G  +++   F  MP++N  +W ++ISG A+                         
Sbjct: 370 GYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQ------------------------- 404

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
                 NGF  E+++LF  + S+  E   CD +  A  I ACA LAAL +G+Q+H+ ++ 
Sbjct: 405 ------NGFGEESLKLFNRMKSEGFE--PCD-YAFAGAIIACAWLAALMHGRQLHAQLVR 455

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            G D     G++L+ +Y KCG   +A+ +   M   D                       
Sbjct: 456 LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLD----------------------- 492

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
                   SV WN+MI+    +    +AL LF  M +  +L D  T  +VLS CS  G +
Sbjct: 493 --------SVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLV 544

Query: 321 EHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV------YDTILL 373
           E G +       + G+       + ++D   + G  S+A  +   + V      ++ +L 
Sbjct: 545 EEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLA 604

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPN 398
              I      G I+ A+ +F  MP 
Sbjct: 605 GCRIHGNMDLG-IQAAERLFELMPQ 628


>gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
 gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
          Length = 697

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/521 (27%), Positives = 254/521 (48%), Gaps = 80/521 (15%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDEM 67
           RL Q C++  ++   +++  H         T PI   NR ++ Y +CG   DA  LFDEM
Sbjct: 64  RLFQLCSSTRALVEARKVESHL---ATFCPTPPIFLLNRAIEAYGKCGCLKDARELFDEM 120

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM------------------- 108
           P+R+  SWNAMI  + + G+  ++L L+  + +   ++  +                   
Sbjct: 121 PQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLASILRSCGSVLALHFSR 180

Query: 109 --------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               L+  + K   +  AR++F+++  RN ++WN ++  Y+  G
Sbjct: 181 QIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVG 240

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             +EAV +F ++     E L   +F  +  + AC+ +AAL  G QIH  ++  GL+ + V
Sbjct: 241 NGKEAVSMFFQM---FRESLMPSSFTFSNALIACSRMAALIEGGQIHGIVVKVGLEENEV 297

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + SSL+++Y KCG   +A+QV       +    ++++  YA  G +  AR +F+   + +
Sbjct: 298 ISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERN 357

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + WN+M++GYI +++  EAL   H MR +    D +TL  +L+ C+    +E GKQVHG
Sbjct: 358 VISWNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRTTLCLILNVCTGSSDVERGKQVHG 417

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              + G   ++ + +ALLD Y K                               CG ++ 
Sbjct: 418 FVYRTGFYANLYIGNALLDMYGK-------------------------------CGNLKS 446

Query: 389 AKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           AK  F  M   +  +SWN+++   +++G   +A+ +F  M +L+   + F+ A+++ ACA
Sbjct: 447 AKVWFYQMSQWRDKVSWNALLTAHARHGMSEQAMTIFSEM-QLETDPNNFTFATLLGACA 505

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           N+ +LE G+Q+   +       D +++ +LVD YCKC  +K
Sbjct: 506 NMFALEHGKQIHGFMVRNNYAIDIVLTGALVDMYCKCRELK 546



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 217/425 (51%), Gaps = 40/425 (9%)

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
           C S  A++E       ++    L    P    F  N  I  + K G LK AR LF++MP+
Sbjct: 69  CSSTRALVEA------RKVESHLATFCPTPPIFLLNRAIEAYGKCGCLKDARELFDEMPQ 122

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+  +WN+MI  Y +NG+A EA+ L+ +LN   V   +     LA+++ +C  + AL + 
Sbjct: 123 RDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEV---TLASILRSCGSVLALHFS 179

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           +QIH HI+  G   + +L SSLV++YGK                               C
Sbjct: 180 RQIHGHIVKCGFVGNVILESSLVDVYGK-------------------------------C 208

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
             MNDAR +FD   + + V WN ++  Y+      EA+ +F +M R  ++  + T ++ L
Sbjct: 209 RLMNDARSMFDEIQNRNDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSNAL 268

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            ACS +  L  G Q+HG   KVG+ ++ +++S+L+D Y K G  ++A ++F++    + I
Sbjct: 269 IACSRMAALIEGGQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLI 328

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              +M+  Y++ G +  A+ +F  MP +++ISWN+M+ G   +    EAL+    M    
Sbjct: 329 SWTSMVYAYATSGDVLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVHLMRSSI 388

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             +D+ +L  +++ C   S +E G+QV   V   G  ++  I  +L+D Y KCG +K  +
Sbjct: 389 KDIDRTTLCLILNVCTGSSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGKCGNLKSAK 448

Query: 492 YYLMQ 496
            +  Q
Sbjct: 449 VWFYQ 453



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 221/522 (42%), Gaps = 135/522 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKG-----ILNSTL------------------PIA 44
           LA +L+SC +  ++H  +Q+H H +K G     IL S+L                   I 
Sbjct: 163 LASILRSCGSVLALHFSRQIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQ 222

Query: 45  NR-------LLQMYMRCGNPTDALLLFDEMPRRN--------------CFSWNAMIEG-- 81
           NR       +++ Y+  GN  +A+ +F +M R +              C    A+IEG  
Sbjct: 223 NRNDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSNALIACSRMAALIEGGQ 282

Query: 82  -----------------------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE 118
                                  ++K G    + Q+F     +N  SW  ++  +A +G+
Sbjct: 283 IHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGD 342

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +  AR LFN+MP RN I+WN+M+  Y+ +    EA+     + S + +    D   L  +
Sbjct: 343 VLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVHLMRSSIKD---IDRTTLCLI 399

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +  C   + +E GKQ+H  +   G   +  +G++L+++YGKCG+  SA      M +  D
Sbjct: 400 LNVCTGSSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRD 459

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                                          V WN++++ +  +    +A+ +F +M+  
Sbjct: 460 ------------------------------KVSWNALLTAHARHGMSEQAMTIFSEMQLE 489

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
               +  T A++L AC+++  LEHGKQ+HG   +     D+++  AL+D Y K       
Sbjct: 490 -TDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNYAIDIVLTGALVDMYCK------- 541

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                   C  ++ A  +F  + ++ ++ WNS+I+G   N   +
Sbjct: 542 ------------------------CRELKYALKVFEHVASRDVVLWNSIILGCCHNRRDM 577

Query: 419 EALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVF 459
            A+ LF  M   + ++ D  +   ++ AC + + +ELG + F
Sbjct: 578 LAIKLFQLMTMEEGIKPDHVTFQGILLACLHENLVELGRKYF 619



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 65/301 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C     +  GKQ+H    + G   + L I N LL MY +CGN   A + F +M
Sbjct: 396 LCLILNVCTGSSDVERGKQVHGFVYRTGFY-ANLYIGNALLDMYGKCGNLKSAKVWFYQM 454

Query: 68  PR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQ--------------------- 100
            + R+  SWNA++    + G  E+++ +F+ M     P                      
Sbjct: 455 SQWRDKVSWNALLTAHARHGMSEQAMTIFSEMQLETDPNNFTFATLLGACANMFALEHGK 514

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  +N+++ +++++G     + K  ELK A  +F  +  R+ + WNS+I     N 
Sbjct: 515 QIHGFMVRNNYAIDIVLTGALVDMYCKCRELKYALKVFEHVASRDVVLWNSIILGCCHNR 574

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A++LF+ +  +  E ++ D      ++ AC     +E G++           FDS+
Sbjct: 575 RDMLAIKLFQLMTME--EGIKPDHVTFQGILLACLHENLVELGRKY----------FDSM 622

Query: 209 LG-----------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
                          +V LYG+ G+ +   + +N M  P D  +  L   +  C +   +
Sbjct: 623 SEKFCVIPRLEHYECMVELYGQHGNMDELEKFINNM--PFDPTVPMLERIFNACREHGHS 680

Query: 258 R 258
           R
Sbjct: 681 R 681


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 230/456 (50%), Gaps = 48/456 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C T  +I  G+Q+H H ++ G     L +AN L+ MY  CG   DA  +FD  P  
Sbjct: 109 LAAACATRRAIEEGRQVHCHAVRHG-FGRNLYLANALMSMYSACGCLGDARKVFDAGPVW 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN ++  +++    ++++ +F  MP++   + + ++S F + G +  AR +F+ + 
Sbjct: 168 DAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVE 227

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R++   W +MI C+ RNG   EA+ LF ++     E    D  ++  V+ ACA L     
Sbjct: 228 RKDVFTWTAMISCFQRNGKFAEALALFSDMRG---EGWPVDEAVMVCVVAACARLEVTRN 284

Query: 191 GKQIHSHILVNGLDFDSVLGS------SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           G+  H      GL F + LGS      +L+++Y    +  +A ++ +  +  D F  +++
Sbjct: 285 GEMCH------GLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSM 338

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           I+GY   G + DA+ +F    D  +V W +MISG + N++ +EAL +F+ M+  G+  D 
Sbjct: 339 IAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDE 398

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            TL SV+SAC+++  LE GK +H +  +      VI+ ++L+D Y K             
Sbjct: 399 VTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMK------------- 445

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             CG +E A  +F TM  +    WN++IVGL+ NG  +++LD+F
Sbjct: 446 ------------------CGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMF 487

Query: 425 CNMNKLDLRM-DKFSLASVISACANISSLELGEQVF 459
             M        ++ +   V+SAC +   +E G+  F
Sbjct: 488 SEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFF 523



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 187/395 (47%), Gaps = 37/395 (9%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           L + + R NA + N ++     +G     + L+  +++        D +    +  ACA 
Sbjct: 62  LLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASMSA------APDCYTHTILAAACAT 115

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG----------------------- 221
             A+E G+Q+H H + +G   +  L ++L+++Y  CG                       
Sbjct: 116 RRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTI 175

Query: 222 --------DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
                   D + A  V   M E     +S+++S +   G +++AR+VFD         W 
Sbjct: 176 LAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWT 235

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MIS +  N +  EAL LF  MR  G   D + +  V++AC+ L    +G+  HG A + 
Sbjct: 236 AMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRA 295

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G+   + V +AL+  YS       A +LF   +  D    N+MI  Y   G ++DAK +F
Sbjct: 296 GLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELF 355

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP+K  +SW +MI G  QN    EAL +F NM    ++ D+ +L SVISAC N+SSLE
Sbjct: 356 TVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLE 415

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            G+ +   +         I+ TSL+D Y KCG ++
Sbjct: 416 QGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLE 450


>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 617

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 169/592 (28%), Positives = 256/592 (43%), Gaps = 145/592 (24%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           YLA LLQSC    +   GK LH    + G+   T  + NRL++ Y +C N   A  LF +
Sbjct: 8   YLANLLQSCIDKKAHLSGKLLHARIFRIGLSTDTF-LLNRLIEFYFKCKNMGYAHNLFHQ 66

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           MP +N +SWNA++  + K G+ + + +LF+ MP++N  SWN LIS   +    + A  ++
Sbjct: 67  MPHKNIYSWNAILTEYCKAGNLQNAHRLFSEMPERNIVSWNNLISALVRGRLEQQALDVY 126

Query: 127 NDM------PRR---------------------------------NAIAWNSMIHCYVRN 147
           N+M      P                                   N    N+++  Y + 
Sbjct: 127 NEMIWEGLMPTHFTLASILSACGTLLNMESGRKCHTLIVKIGLDNNVYVSNALLSVYSKC 186

Query: 148 GFAREAVRLFKELNSD-----------------LVE-----RLQC------DAFILATVI 179
           G  R+AVRLF+E+                    +VE     RL C      D+  L++V+
Sbjct: 187 GLVRDAVRLFEEMQEPNEVTYTAMMSGFTQTDRVVEALEMFRLMCRQGICIDSVSLSSVL 246

Query: 180 GACADLAALE-----------YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           G C      E            GK  H   +  G + D  L +SL+++Y K GD +SA +
Sbjct: 247 GVCTKGGCGESDQSDGSLRNALGKLAHGLAIKLGFESDLHLCNSLLDMYAKDGDMDSAEE 306

Query: 229 VLNMMKEPDDFCLSALISGYA----------------NCGKMND---------------- 256
           V   + E      + +I+GY                 +CG   D                
Sbjct: 307 VFANLPEMSVVSWNVMIAGYGQKCKSGKAIEYLQRMQSCGFEPDEVTYINMLTACVRSGD 366

Query: 257 ---ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
               R++FD         WN M+SGY       EA+ LF +M+   V  D +TLA +LS+
Sbjct: 367 IEIGRQIFDCMACPGVSSWNGMLSGYFQIENHNEAIKLFREMQFQNVKPDRTTLAIILSS 426

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+ +  LE GKQVH  + K    +D+ VAS L+  YSK G          ++ + D I  
Sbjct: 427 CAGMELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSKCG----------KMDIADCI-- 474

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                              F+ +  +  + WNSMI GLS N    EAL  F  M +  + 
Sbjct: 475 -------------------FKKISKQDTVCWNSMIAGLSLNSLDNEALAFFQQMRQSGMS 515

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             +FS A+++S CA +SSL  G+Q+ A++   G  +D  + ++LVD YCKCG
Sbjct: 516 PTQFSYATILSCCAKLSSLIHGKQIHAQIAKEGFVNDVYVGSALVDMYCKCG 567



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 192/409 (46%), Gaps = 70/409 (17%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +GK  H   +K G   S L + N LL MY + G+   A  +F  +P  +  SWN MI G+
Sbjct: 268 LGKLAHGLAIKLG-FESDLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSVVSWNVMIAGY 326

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
            +     K+++    M     + ++ ++  +++   ++G+++  R +F+ M      +WN
Sbjct: 327 GQKCKSGKAIEYLQRMQSCGFEPDEVTYINMLTACVRSGDIEIGRQIFDCMACPGVSSWN 386

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
            M+  Y +     EA++LF+E+     + ++ D   LA ++ +CA +  LE GKQ+H+  
Sbjct: 387 GMLSGYFQIENHNEAIKLFREMQ---FQNVKPDRTTLAIILSSCAGMELLEAGKQVHAIS 443

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
                  D  + S L+ +Y K                               CGKM+ A 
Sbjct: 444 QKAAFHEDIYVASGLIGMYSK-------------------------------CGKMDIAD 472

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
            +F + +   +V WNSMI+G   N+ D EAL  F +MR++G+     + A++LS C+ L 
Sbjct: 473 CIFKKISKQDTVCWNSMIAGLSLNSLDNEALAFFQQMRQSGMSPTQFSYATILSCCAKLS 532

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L HGKQ+H    K G ++DV V SAL+D Y K                           
Sbjct: 533 SLIHGKQIHAQIAKEGFVNDVYVGSALVDMYCK--------------------------- 565

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
               CG + +A+  F  M +K+ ++WN MI G +QNG   EA+ L+ +M
Sbjct: 566 ----CGEVGEARQFFDIMSSKNTVTWNEMIHGYAQNGHGHEAVCLYRDM 610



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 97/182 (53%)

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           LA++L +C        GK +H    ++G+  D  + + L++ Y K      A  LF ++ 
Sbjct: 9   LANLLQSCIDKKAHLSGKLLHARIFRIGLSTDTFLLNRLIEFYFKCKNMGYAHNLFHQMP 68

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
             +    N ++T Y   G +++A  +F  MP ++++SWN++I  L +     +ALD++  
Sbjct: 69  HKNIYSWNAILTEYCKAGNLQNAHRLFSEMPERNIVSWNNLISALVRGRLEQQALDVYNE 128

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M    L    F+LAS++SAC  + ++E G +    +  IGLD++  +S +L+  Y KCG 
Sbjct: 129 MIWEGLMPTHFTLASILSACGTLLNMESGRKCHTLIVKIGLDNNVYVSNALLSVYSKCGL 188

Query: 487 IK 488
           ++
Sbjct: 189 VR 190



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 40/192 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L SC     +  GKQ+H    +K   +  + +A+ L+ MY +CG    A  +F ++
Sbjct: 420 LAIILSSCAGMELLEAGKQVHA-ISQKAAFHEDIYVASGLIGMYSKCGKMDIADCIFKKI 478

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLIS------------ 111
            +++   WN+MI G        ++L  F  M Q       FS+  ++S            
Sbjct: 479 SKQDTVCWNSMIAGLSLNSLDNEALAFFQQMRQSGMSPTQFSYATILSCCAKLSSLIHGK 538

Query: 112 ---------GFA--------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                    GF               K GE+  AR  F+ M  +N + WN MIH Y +NG
Sbjct: 539 QIHAQIAKEGFVNDVYVGSALVDMYCKCGEVGEARQFFDIMSSKNTVTWNEMIHGYAQNG 598

Query: 149 FAREAVRLFKEL 160
              EAV L++++
Sbjct: 599 HGHEAVCLYRDM 610



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T+  Y A +L  C    S+  GKQ+H    K+G +N    + + L+ MY +CG   +A  
Sbjct: 517 TQFSY-ATILSCCAKLSSLIHGKQIHAQIAKEGFVNDVY-VGSALVDMYCKCGEVGEARQ 574

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
            FD M  +N  +WN MI G+ + GH  +++ L+  M
Sbjct: 575 FFDIMSSKNTVTWNEMIHGYAQNGHGHEAVCLYRDM 610


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/476 (28%), Positives = 245/476 (51%), Gaps = 45/476 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++ +  +     DA  LFD+M  RN  SWN MI G++     E++ +LF+VMP++++F
Sbjct: 52  NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNF 111

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCYVRNGFAREAVRLFKELNS- 162
           SW ++I+ + + G+L+ AR L   +P + +   WN+MI  Y + G   +A ++F+++ + 
Sbjct: 112 SWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAK 171

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           DLV     ++ +          LA   +      +++   L         +V  Y K GD
Sbjct: 172 DLVS---YNSMLAGYTQNGKMHLALQFFESMTERNVVSWNL---------MVAGYVKSGD 219

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
            +SA Q+   +  P+      ++ G A  GKM +AR +FDR    + V WN+MI+ Y+ +
Sbjct: 220 LSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQD 279

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACK--------- 332
            +  EA+ LF KM      +D+ +  ++++    +G L+  +QV+    CK         
Sbjct: 280 LQVDEAVKLFKKMPH----KDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALM 335

Query: 333 -----VGVID------------DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
                 G ID            DV+  ++++  YS+ G   +A  LF ++ + +++  NT
Sbjct: 336 SGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNT 395

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           MI+ Y+  G+++ A  IF+ M  K+++SWNS+I G  QN   ++AL     M K   + D
Sbjct: 396 MISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPD 455

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           + + A  +SACAN+++L++G Q+   +   G  +D  +  +L+  Y KCG ++  E
Sbjct: 456 QSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAE 511



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 203/411 (49%), Gaps = 38/411 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G    AL  F+ M  RN  SWN M+ G++K G    + QLF  +P  N  
Sbjct: 177 NSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAV 236

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  ++ G AK G++  AR LF+ MP +N ++WN+MI  YV++    EAV+LFK++    
Sbjct: 237 SWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHK- 295

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHI----------LVNGL----------- 203
                 D+    T+I     +  L+  +Q+++ +          L++GL           
Sbjct: 296 ------DSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQ 349

Query: 204 ------DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
                   D V  +S++  Y + G  + A  +   M   +    + +ISGYA  G+M+ A
Sbjct: 350 MFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRA 409

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
             +F    + + V WNS+I+G++ NN   +AL     M + G   D ST A  LSAC++L
Sbjct: 410 TEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANL 469

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L+ G Q+H +  K G ++D+ V +AL+  Y+K G    A ++F +++  D I  N++I
Sbjct: 470 AALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLI 529

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL----SQNGSPIEALDLF 424
           + Y+  G    A   F  M ++ ++      +G+    S  G   + LD+F
Sbjct: 530 SGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIF 580



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 31/239 (12%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ VG QLH + LK G +N  L + N L+ MY +CG    A  +F ++   +
Sbjct: 463 LSACANLAALQVGNQLHEYILKSGYMND-LFVGNALIAMYAKCGRVQSAEQVFRDIECVD 521

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             SWN++I G+   G+  K+ + F  M  +    ++ ++  ++S  + AG       +F 
Sbjct: 522 LISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFK 581

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M    AI      ++ ++    R G      RL +  N+    +++ +A +  +++GAC
Sbjct: 582 CMIEDFAIEPLAEHYSCLVDLLGRVG------RLEEAFNTVRGMKVKANAGLWGSLLGAC 635

Query: 183 ADLAALEYGK-------QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
                LE G+       ++  H   N +        +L N++ + G +    +V  +M+
Sbjct: 636 RVHKNLELGRFAAERLFELEPHNASNYI--------TLSNMHAEAGRWEEVERVRMLMR 686


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 230/456 (50%), Gaps = 48/456 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C T  +I  G+Q+H H ++ G     L +AN L+ MY  CG   DA  +FD  P  
Sbjct: 109 LAAACATRRAIEEGRQVHCHAVRHG-FGRNLYLANALMSMYSACGCLGDARKVFDAGPVW 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN ++  +++    ++++ +F  MP++   + + ++S F + G +  AR +F+ + 
Sbjct: 168 DAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVE 227

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R++   W +MI C+ RNG   EA+ LF ++     E    D  ++  V+ ACA L     
Sbjct: 228 RKDVFTWTAMISCFQRNGKFAEALALFSDMRG---EGWPVDEAVMVCVVAACARLEVTRN 284

Query: 191 GKQIHSHILVNGLDFDSVLGS------SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           G+  H      GL F + LGS      +L+++Y    +  +A ++ +  +  D F  +++
Sbjct: 285 GEMCH------GLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSM 338

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           I+GY   G + DA+ +F    D  +V W +MISG + N++ +EAL +F+ M+  G+  D 
Sbjct: 339 IAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDE 398

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            TL SV+SAC+++  LE GK +H +  +      VI+ ++L+D Y K             
Sbjct: 399 VTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMK------------- 445

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             CG +E A  +F TM  +    WN++IVGL+ NG  +++LD+F
Sbjct: 446 ------------------CGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMF 487

Query: 425 CNMNKLDLRM-DKFSLASVISACANISSLELGEQVF 459
             M        ++ +   V+SAC +   +E G+  F
Sbjct: 488 SEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFF 523



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 187/395 (47%), Gaps = 37/395 (9%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           L + + R NA + N ++     +G     + L+  +++        D +    +  ACA 
Sbjct: 62  LLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASMSA------APDCYTHTILAAACAT 115

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG----------------------- 221
             A+E G+Q+H H + +G   +  L ++L+++Y  CG                       
Sbjct: 116 RRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTI 175

Query: 222 --------DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
                   D + A  V   M E     +S+++S +   G +++AR+VFD         W 
Sbjct: 176 LAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWT 235

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MIS +  N +  EAL LF  MR  G   D + +  V++AC+ L    +G+  HG A + 
Sbjct: 236 AMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRA 295

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G+   + V +AL+  YS       A +LF   +  D    N+MI  Y   G ++DAK +F
Sbjct: 296 GLGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELF 355

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP+K  +SW +MI G  QN    EAL +F NM    ++ D+ +L SVISAC N+SSLE
Sbjct: 356 TVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLE 415

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            G+ +   +         I+ TSL+D Y KCG ++
Sbjct: 416 QGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLE 450


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 211/437 (48%), Gaps = 33/437 (7%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           +R       L+L   +     F  N ++  + K G   ++ ++F+ MP  N F+ N L+S
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
             A +  +     LF  MP R+A+++N++I  +   G    +V+L++ L  +  E ++  
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLRE--ESVRPT 145

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
              L+ +I   + L+    G  +H  +L  G    + +GS LV++Y K G    A +V  
Sbjct: 146 RITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQ 205

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M+       + LI+G   C  + DA+ +F    D  S+ W +M++G   N    EAL +
Sbjct: 206 EMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDV 265

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +MR  GV  D  T  S+L+AC +L  LE GKQ+H +  +    D+V V SAL+D YSK
Sbjct: 266 FRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSK 325

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          C  I  A+ +FR M  +++ISW +MIVG 
Sbjct: 326 -------------------------------CRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            QN    EA+  F  M    ++ D F+L SVIS+CAN++SLE G Q      + GL    
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 472 IISTSLVDFYCKCGFIK 488
            +S +LV  Y KCG I+
Sbjct: 415 TVSNALVTLYGKCGSIE 431



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 156/280 (55%), Gaps = 1/280 (0%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+  Y K G    A +V + M +P+ F  +AL+S  A+   + D  R+F    +  +V +
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSY 113

Query: 273 NSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           N++I+G+ S      ++ L+  + R   V     TL++++   S+L     G  VH    
Sbjct: 114 NALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL 173

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           ++G      V S L+D Y+K G+  DA ++F E++    ++ NT+IT    C  IEDAK 
Sbjct: 174 RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKG 233

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F+ M ++  I+W +M+ GL+QNG  +EALD+F  M    + +D+++  S+++AC  +++
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           LE G+Q+ A +T    + +  + ++LVD Y KC  I++ E
Sbjct: 294 LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAE 333



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 193/428 (45%), Gaps = 72/428 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  + +++ + K+G    + ++F  M  K    +N LI+G  +   ++ A+ LF  M  R
Sbjct: 182 FVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDR 241

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++I W +M+    +NG   EA+ +F+ + +   E +  D +   +++ AC  LAALE GK
Sbjct: 242 DSITWTTMVTGLTQNGLQLEALDVFRRMRA---EGVGIDQYTFGSILTACGALAALEEGK 298

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH++I     + +  +GS+LV++Y                               + C 
Sbjct: 299 QIHAYITRTWYEDNVFVGSALVDMY-------------------------------SKCR 327

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A  VF R T  + + W +MI GY  N    EA+  F +M+ +G+  D  TL SV+S
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVIS 387

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C++L  LE G Q H  A   G++  + V++AL+  Y K G   DA +LF E+  +D + 
Sbjct: 388 SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              ++T                               G +Q G   E +DLF  M    L
Sbjct: 448 WTALVT-------------------------------GYAQFGKAKETIDLFEKMLANGL 476

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGFIK 488
           + D  +   V+SAC+    +E G   F  +     I+ +D      T ++D Y + G  K
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY---TCMIDLYSRSGRFK 533

Query: 489 MDEYYLMQ 496
             E ++ Q
Sbjct: 534 EAEEFIKQ 541



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMR-YITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
              +  SW A++ G+ + G  ++++ LF  M     + +  ++  ++S  ++AG ++   
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M + + I      +  MI  Y R+G  +EA    K++          DAF  AT+
Sbjct: 501 DYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHS------PDAFGWATL 554

Query: 179 IGACADLAALEYGKQIHSHIL 199
           + +C     +E GK    ++L
Sbjct: 555 LSSCRLRGNMEIGKWAAENLL 575


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  218 bits (556), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 248/496 (50%), Gaps = 63/496 (12%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA----------NRLLQMYM 52
           T ++ L R   + N+  + H  K      ++K   + T P+           N  +  YM
Sbjct: 14  TSLNGLKRRYNNANSASNFHSSKSSTQTQIQK---SQTKPLPKSGDSDIKEWNVAISSYM 70

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G  ++AL +F  MPR +  S+NAMI G+++ G  E +  LF+ MP+++  SWN++I G
Sbjct: 71  RTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKG 130

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           + +   L  AR LF  MP R+  +WN+++  Y +NG   +A R+F  +       +  +A
Sbjct: 131 YVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK--NDVSWNA 188

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
            + A V  +  + A + +G + +  ++     ++ +LG      + K      A Q  + 
Sbjct: 189 LLSAYVQNSKLEEACVLFGSRENWALV----SWNCLLGG-----FVKKKKIVEARQFFDS 239

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           MK  D    + +I+GYA  G++++AR++FD +       W +M+SGYI N    EA  LF
Sbjct: 240 MKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELF 299

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            +M     +   + LA         G+++ G++V              +A  L D     
Sbjct: 300 DRMPERNEVSWNAMLA---------GYVQ-GERVE-------------MAKELFDV---- 332

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
            MP   C+  S          NTMIT Y+ CG+I +AK++F  MP +  +SW +MI G S
Sbjct: 333 -MP---CRNVS--------TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYS 380

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q+G   EAL LF  M +   R+++ S +S +S CA++ +LELG+Q+  R+   G ++   
Sbjct: 381 QSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCF 440

Query: 473 ISTSLVDFYCKCGFIK 488
           +  +L+  YCKCG I+
Sbjct: 441 VGNALLLMYCKCGSIE 456



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 225/500 (45%), Gaps = 91/500 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R G    A +LFDEMP R+  SWN MI+G+++  +  K+ +LF  MP+++  
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-- 162
           SWN ++SG+A+ G +  AR +F+ MP +N ++WN+++  YV+N    EA  LF    +  
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWA 213

Query: 163 ---------------DLVERLQC-------DAFILATVIGACADLAALEYGKQIHSHILV 200
                           +VE  Q        D     T+I   A    ++  +Q+     V
Sbjct: 214 LVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPV 273

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---------------- 244
           +    D    +++V+ Y +      A ++ + M E ++   +A+                
Sbjct: 274 H----DVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKEL 329

Query: 245 ---------------ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                          I+GYA CGK+++A+ +FD+      V W +MI+GY  +    EAL
Sbjct: 330 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEAL 389

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF  M R G   + S+ +S LS C+ +  LE GKQ+HG   K G      V +ALL  Y
Sbjct: 390 RLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 449

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K G   +A  LF E+   D +  NTMI  YS  G  E                      
Sbjct: 450 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGE---------------------- 487

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLD 468
                    EAL  F +M +  L+ D  ++ +V+SAC++   ++ G Q F  +T   G+ 
Sbjct: 488 ---------EALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVR 538

Query: 469 SDQIISTSLVDFYCKCGFIK 488
            +      +VD   + G ++
Sbjct: 539 PNSQHYACMVDLLGRAGLLE 558



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 180/364 (49%), Gaps = 49/364 (13%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           I NR+++         +A  LFD MP RN  SWNAM+ G+++    E + +LF+VMP +N
Sbjct: 287 IQNRMVE---------EARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRN 337

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             +WN +I+G+A+ G++  A+ LF+ MP+R+ ++W +MI  Y ++G + EA+RLF  +  
Sbjct: 338 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER 397

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           +   RL   +F  ++ +  CAD+ ALE GKQ+H  ++  G +    +G++L+ +Y KC  
Sbjct: 398 E-GGRLNRSSF--SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-- 452

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                        G + +A  +F        V WN+MI+GY  +
Sbjct: 453 -----------------------------GSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 483

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIV 341
               EAL  F  M+R G+  D +T+ +VLSACS  G ++ G+Q  H      GV  +   
Sbjct: 484 GFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQH 543

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIE----DAKHIFRTM 396
            + ++D   + G+  +A  L   +    D  +  T++      G  E     A  IF   
Sbjct: 544 YACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 603

Query: 397 PNKS 400
           P  S
Sbjct: 604 PENS 607



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQLH   +K G       + N LL MY +CG+  +A  LF EM  ++
Sbjct: 411 LSTCADVVALELGKQLHGRLVKGGYETGCF-VGNALLLMYCKCGSIEEANDLFKEMAGKD 469

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI G+ + G  E++L+ F  M ++    +D +   ++S  +  G +   R  F+
Sbjct: 470 IVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFH 529

Query: 128 DMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M      R N+  +  M+    R G   EA  L K +        + DA I  T++GA 
Sbjct: 530 TMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMP------FEPDAAIWGTLLGAS 583

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 E  +     I     + +S +   L NLY   G +    ++   M++
Sbjct: 584 RVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRVRMRD 635


>gi|357482291|ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512766|gb|AES94389.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 735

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 225/453 (49%), Gaps = 68/453 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   +R G+  +A  +FD+ P +N  SWNAMIEG+++ G  + +  LF+ +  +N  
Sbjct: 169 NSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMIEGYVENGRMDDAKDLFDQIECRNVI 228

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W  +ISG+ + G++  A  LF  MP +N ++W +MI  +  NGF REA+ LF ++ +  
Sbjct: 229 TWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREALLLFLDMMTLS 288

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGKCG 221
             +   + F+  +++ ACA +     GKQ+H+ +++N     D+D  LG SLV +Y  CG
Sbjct: 289 DAKPNEETFV--SLVYACAGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCG 346

Query: 222 DFNSANQVLNM-MKEPDDFCLSALISGYANCGKMNDARRVFDRT---------------- 264
             +SA  V    MK  DD   +++I+GY   G+++ A+ +FD                  
Sbjct: 347 LMDSARSVFEGDMKNCDDQSFNSMINGYVQAGQLHKAQELFDTVPIRNKIAWTCMISGYL 406

Query: 265 -----------------TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                            +D  S+ W  MI GY+ N    EA+ LF +M   G     ST 
Sbjct: 407 SAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNELIAEAINLFAEMMAQGASPINSTY 466

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A +  A  S+ +L+ G Q+H              A  L   Y                  
Sbjct: 467 AVLFGAVGSVAYLDLGWQLH--------------AMQLKTIYEYE--------------- 497

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           YD  L N++I++Y+ CG IEDA  IF  M  +  ISWNSMI+GLS +G   EAL+++  M
Sbjct: 498 YDVYLENSLISMYAKCGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANEALNMYETM 557

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            +  +  D  +   V++ACA+   ++ G ++F+
Sbjct: 558 LEFGVYPDAVTFLGVLTACAHAGFVDKGCELFS 590



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 228/503 (45%), Gaps = 88/503 (17%)

Query: 29  LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
           LH    G ++S +     +L  Y + G    A  LFD MP RN  ++NAM+  +++ G  
Sbjct: 60  LHSFPSGNIHSRVVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMT 119

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
            ++ + F+ MP++N  SW  ++SG+A  G +  AR +F++MP RN ++WNSM+   +RNG
Sbjct: 120 RQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARKVFDEMPERNVVSWNSMVVGLIRNG 179

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA ++F +                                            D + V
Sbjct: 180 DLEEARKVFDDTP------------------------------------------DKNVV 197

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             ++++  Y + G  + A  + + ++  +    +++ISGY   G +N+A R+F    + +
Sbjct: 198 SWNAMIEGYVENGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVNEAFRLFQIMPEKN 257

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA----STLASVLSACSSLGFLEHGK 324
            V W +MI G+  N    EALLLF  M     L DA     T  S++ AC+ +GF   GK
Sbjct: 258 VVSWTAMIGGFAWNGFYREALLLFLDMM---TLSDAKPNEETFVSLVYACAGMGFPCLGK 314

Query: 325 QVHG-----------HACKV-----------GVID-------------DVIVASALLDTY 349
           Q+H            + C++           G++D             D    +++++ Y
Sbjct: 315 QLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMKNCDDQSFNSMINGY 374

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSM 407
            + G    A +LF  + + + I    MI+ Y S G++  A ++F  MP  +K  I+W  M
Sbjct: 375 VQAGQLHKAQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKDSIAWTLM 434

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TII 465
           I G  QN    EA++LF  M          + A +  A  +++ L+LG Q+ A    TI 
Sbjct: 435 IYGYVQNELIAEAINLFAEMMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIY 494

Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
             + D  +  SL+  Y KCG I+
Sbjct: 495 EYEYDVYLENSLISMYAKCGEIE 517



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 187/405 (46%), Gaps = 72/405 (17%)

Query: 23  VGKQLHLHFL--KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC--FSWNAM 78
           +GKQLH   +  +  + +    +   L++MY  CG    A  +F E   +NC   S+N+M
Sbjct: 312 LGKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGLMDSARSVF-EGDMKNCDDQSFNSM 370

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR--RNAIA 136
           I G+++ G   K+ +LF+ +P +N  +W  +ISG+  AG++  A  LF+DMP   +++IA
Sbjct: 371 INGYVQAGQLHKAQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKDSIA 430

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           W  MI+ YV+N    EA+ LF E+ +     +       A + GA   +A L+ G Q+H+
Sbjct: 431 WTLMIYGYVQNELIAEAINLFAEMMAQGASPINS---TYAVLFGAVGSVAYLDLGWQLHA 487

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
             L    ++                             E D +  ++LIS YA CG++ D
Sbjct: 488 MQLKTIYEY-----------------------------EYDVYLENSLISMYAKCGEIED 518

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A R+F        + WNSMI G   +    EAL ++  M   GV  DA T   VL+AC+ 
Sbjct: 519 AYRIFSNMNCRDKISWNSMIMGLSDHGRANEALNMYETMLEFGVYPDAVTFLGVLTACAH 578

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
            GF++ G ++                S +L+ Y+          L   L+ Y +I     
Sbjct: 579 AGFVDKGCELF---------------SVMLNDYA----------LQPGLEHYVSI----- 608

Query: 377 ITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMI--VGLSQNGSPI 418
           I +    GR++DA+     +P   +   W ++I   GLS+  + I
Sbjct: 609 INILGRAGRVKDAEEFVLRLPVEPNHTIWGALIGVCGLSKTDADI 653


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 158/560 (28%), Positives = 250/560 (44%), Gaps = 117/560 (20%)

Query: 9    ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              LLQ C    ++H G+Q+H   LK G        +  +L+  Y +C  P  A+ LF  +
Sbjct: 1178 GELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRL 1237

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM------------------- 108
              RN FSW A++    ++G  E +L  F  M +   F  N                    
Sbjct: 1238 RVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGK 1297

Query: 109  --------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                L+  + K G L+ AR +F+ M  +N + WNSMI  YV+NG
Sbjct: 1298 GVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNG 1357

Query: 149  FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +EA+ +F ++    VE ++     +A+ + A A+L AL  GKQ H+  ++N LD D++
Sbjct: 1358 LNQEAIDVFYDMR---VEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNI 1414

Query: 209  LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            LGSS++N Y K                                G + DA  VF R  +  
Sbjct: 1415 LGSSIINFYSKV-------------------------------GLIEDAELVFSRMLEKD 1443

Query: 269  SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
             V WN +IS Y+ +++  +AL + H MR   +  D+ TL+S+LSA +    ++ GK+ H 
Sbjct: 1444 VVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHC 1503

Query: 329  HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
            +  +  +  DV+VA++++D Y+K     DA K+F      D +L NT++  Y+  G    
Sbjct: 1504 YCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGE 1563

Query: 385  -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                           ++ +AK +F  M      PN  LI+W ++
Sbjct: 1564 ALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPN--LITWTTL 1621

Query: 408  IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
            I GL+Q+G   EA+  F  M +  +R    S+ SV+ AC +I SL  G  +   +T    
Sbjct: 1622 ISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEF 1681

Query: 468  DSDQIISTSLVDFYCKCGFI 487
                 ++TSLVD Y KCG I
Sbjct: 1682 CLSVPVATSLVDMYAKCGSI 1701



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/531 (23%), Positives = 243/531 (45%), Gaps = 113/531 (21%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L  +L++C +   I +GK +H + LK G   + + +++ L+ MY +CG   DA  +FD M
Sbjct: 1280 LPNVLKACGSLQLIGLGKGVHGYVLKMG-FGACVFVSSSLVDMYGKCGVLEDARKVFDSM 1338

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS--------WNMLISG- 112
              +N  +WN+MI G+++ G  ++++ +F       + P +   +         + LI G 
Sbjct: 1339 VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGK 1398

Query: 113  ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                    ++K G ++ A  +F+ M  ++ + WN +I  YV++ 
Sbjct: 1399 QGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHH 1458

Query: 149  FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               +A+ +   + S   E L+ D+  L++++ A A  + ++ GK+ H + +   L+ D V
Sbjct: 1459 QVGKALNMCHLMRS---ENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 1515

Query: 209  LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR----T 264
            + +S++++Y KC   + A +V +   E D    + L++ YA  G   +A ++F +    +
Sbjct: 1516 VANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDS 1575

Query: 265  TDTSSVMWNSMISGYISNNE-----------------------------------DTEAL 289
               + + WNS+I G++ N +                                     EA+
Sbjct: 1576 VPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAI 1635

Query: 290  LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            L F KM+  G+    +++ SVL AC+ +  L +G+ +HG   +      V VA++L+D Y
Sbjct: 1636 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY 1695

Query: 350  SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            +K                               CG I++AK +F  M +K L  +N+MI 
Sbjct: 1696 AK-------------------------------CGSIDEAKKVFHMMSSKELPIYNAMIS 1724

Query: 410  GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
              + +G  +EAL LF ++ K  +  D  +  S++SAC++   +  G  +FA
Sbjct: 1725 AYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 1775



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 160/346 (46%), Gaps = 63/346 (18%)

Query: 146  RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
            ++G  +E+V L  E+     E  Q    I   ++  C    AL  G+QIH+ IL NG   
Sbjct: 1151 KDGHLQESVHLLSEME---FEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNG--- 1204

Query: 206  DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                            DF + N          ++  + L+  YA C     A R+F R  
Sbjct: 1205 ----------------DFFAKN----------EYVETKLVVFYAKCDFPEVAVRLFHRLR 1238

Query: 266  DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
              +   W +++          +ALL F +M+ NGV  D   L +VL AC SL  +  GK 
Sbjct: 1239 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKG 1298

Query: 326  VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            VHG+  K+G    V V+S+L+D Y K                               CG 
Sbjct: 1299 VHGYVLKMGFGACVFVSSSLVDMYGK-------------------------------CGV 1327

Query: 386  IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            +EDA+ +F +M  K++++WNSMIVG  QNG   EA+D+F +M    +   + ++AS +SA
Sbjct: 1328 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 1387

Query: 446  CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             AN+ +L  G+Q  A   +  LD D I+ +S+++FY K G I+  E
Sbjct: 1388 SANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAE 1433



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 178/403 (44%), Gaps = 83/403 (20%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L+ +L +     +I +GK+ H + +++  L S + +AN ++ MY +C    DA  +FD  
Sbjct: 1482 LSSILSASAVTSNIKLGKEGHCYCIRRN-LESDVVVANSIIDMYAKCERIDDARKVFDST 1540

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              R+   WN ++  + ++G   ++L+LF  M       N  SWN +I GF + G++  A+
Sbjct: 1541 TERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAK 1600

Query: 124  TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             +F+ M     + N I W ++I    ++GF  EA+  F+++       ++     + +V+
Sbjct: 1601 DMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQE---AGIRPSIASITSVL 1657

Query: 180  GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
             AC D+ +L YG+ IH  I  +       + +SLV++Y                      
Sbjct: 1658 LACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY---------------------- 1695

Query: 240  CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                     A CG +++A++VF   +     ++N+MIS Y  + +  EAL LF       
Sbjct: 1696 ---------AKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFK------ 1740

Query: 300  VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
                                         H  K G+  D I  +++L   S  G+ ++  
Sbjct: 1741 -----------------------------HLQKEGIEPDSITFTSILSACSHAGLVNEGL 1771

Query: 360  KLFSELKV---YDTIL--LNTMITVYSSCGRIEDAKHIFRTMP 397
             LF+++      + I+     ++++ S CG +++A  +  TMP
Sbjct: 1772 NLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 1814



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 17/239 (7%)

Query: 5    IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
            I  +  +L +C    S+  G+ +H  F+ +     ++P+A  L+ MY +CG+  +A  +F
Sbjct: 1650 IASITSVLLACTDIPSLWYGRAIH-GFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVF 1708

Query: 65   DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
              M  +    +NAMI  +   G   ++L LF  + ++    +  ++  ++S  + AG + 
Sbjct: 1709 HMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVN 1768

Query: 121  TARTLFNDMPRR---NAIA--WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                LF DM  +   N I   +  ++    R G   EA+RL       L    Q DA IL
Sbjct: 1769 EGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLI------LTMPFQPDAHIL 1822

Query: 176  ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             +++ AC +   +E G+ +  H L      +S    +L N Y   G +   + + ++MK
Sbjct: 1823 GSLLTACREHHEIELGEYLSKH-LFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 1880


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 158/560 (28%), Positives = 250/560 (44%), Gaps = 117/560 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             LLQ C    ++H G+Q+H   LK G        +  +L+  Y +C  P  A+ LF  +
Sbjct: 83  GELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRL 142

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM------------------- 108
             RN FSW A++    ++G  E +L  F  M +   F  N                    
Sbjct: 143 RVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGK 202

Query: 109 --------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               L+  + K G L+ AR +F+ M  +N + WNSMI  YV+NG
Sbjct: 203 GVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNG 262

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             +EA+ +F ++    VE ++     +A+ + A A+L AL  GKQ H+  ++N LD D++
Sbjct: 263 LNQEAIDVFYDMR---VEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNI 319

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LGSS++N Y K                                G + DA  VF R  +  
Sbjct: 320 LGSSIINFYSKV-------------------------------GLIEDAELVFSRMLEKD 348

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +IS Y+ +++  +AL + H MR   +  D+ TL+S+LSA +    ++ GK+ H 
Sbjct: 349 VVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHC 408

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  +  +  DV+VA++++D Y+K     DA K+F      D +L NT++  Y+  G    
Sbjct: 409 YCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGE 468

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK +F  M      PN  LI+W ++
Sbjct: 469 ALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPN--LITWTTL 526

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I GL+Q+G   EA+  F  M +  +R    S+ SV+ AC +I SL  G  +   +T    
Sbjct: 527 ISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEF 586

Query: 468 DSDQIISTSLVDFYCKCGFI 487
                ++TSLVD Y KCG I
Sbjct: 587 CLSVPVATSLVDMYAKCGSI 606



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/531 (23%), Positives = 244/531 (45%), Gaps = 113/531 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C +   I +GK +H + LK G   + + +++ L+ MY +CG   DA  +FD M
Sbjct: 185 LPNVLKACGSLQLIGLGKGVHGYVLKMG-FGACVFVSSSLVDMYGKCGVLEDARKVFDSM 243

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK-------------------- 101
             +N  +WN+MI G+++ G  ++++ +F       + P +                    
Sbjct: 244 VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGK 303

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        ++   + +I+ ++K G ++ A  +F+ M  ++ + WN +I  YV++ 
Sbjct: 304 QGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHH 363

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ +   + S   E L+ D+  L++++ A A  + ++ GK+ H + +   L+ D V
Sbjct: 364 QVGKALNMCHLMRS---ENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVV 420

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR----T 264
           + +S++++Y KC   + A +V +   E D    + L++ YA  G   +A ++F +    +
Sbjct: 421 VANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDS 480

Query: 265 TDTSSVMWNSMISGYISNNE-----------------------------------DTEAL 289
              + + WNS+I G++ N +                                     EA+
Sbjct: 481 VPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAI 540

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
           L F KM+  G+    +++ SVL AC+ +  L +G+ +HG   +      V VA++L+D Y
Sbjct: 541 LFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY 600

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +K                               CG I++AK +F  M +K L  +N+MI 
Sbjct: 601 AK-------------------------------CGSIDEAKKVFHMMSSKELPIYNAMIS 629

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
             + +G  +EAL LF ++ K  +  D  +  S++SAC++   +  G  +FA
Sbjct: 630 AYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 680



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 160/346 (46%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G  +E+V L  E+     E  Q    I   ++  C    AL  G+QIH+ IL NG   
Sbjct: 56  KDGHLQESVHLLSEME---FEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNG--- 109

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + N+          +  + L+  YA C     A R+F R  
Sbjct: 110 ----------------DFFAKNE----------YVETKLVVFYAKCDFPEVAVRLFHRLR 143

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W +++          +ALL F +M+ NGV  D   L +VL AC SL  +  GK 
Sbjct: 144 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKG 203

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K+G    V V+S+L+D Y K                               CG 
Sbjct: 204 VHGYVLKMGFGACVFVSSSLVDMYGK-------------------------------CGV 232

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +EDA+ +F +M  K++++WNSMIVG  QNG   EA+D+F +M    +   + ++AS +SA
Sbjct: 233 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 292

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+ +L  G+Q  A   +  LD D I+ +S+++FY K G I+  E
Sbjct: 293 SANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAE 338



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 178/403 (44%), Gaps = 83/403 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +     +I +GK+ H + +++  L S + +AN ++ MY +C    DA  +FD  
Sbjct: 387 LSSILSASAVTSNIKLGKEGHCYCIRRN-LESDVVVANSIIDMYAKCERIDDARKVFDST 445

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             R+   WN ++  + ++G   ++L+LF  M       N  SWN +I GF + G++  A+
Sbjct: 446 TERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAK 505

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F+ M     + N I W ++I    ++GF  EA+  F+++       ++     + +V+
Sbjct: 506 DMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQE---AGIRPSIASITSVL 562

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            AC D+ +L YG+ IH  I  +       + +SLV++Y                      
Sbjct: 563 LACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMY---------------------- 600

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                    A CG +++A++VF   +     ++N+MIS Y  + +  EAL LF  +++ G
Sbjct: 601 ---------AKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEG 651

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D+                                   I  +++L   S  G+ ++  
Sbjct: 652 IEPDS-----------------------------------ITFTSILSACSHAGLVNEGL 676

Query: 360 KLFSELKVYDTI-----LLNTMITVYSSCGRIEDAKHIFRTMP 397
            LF+++     +         ++++ S CG +++A  +  TMP
Sbjct: 677 NLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 719



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 17/239 (7%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I  +  +L +C    S+  G+ +H  F+ +     ++P+A  L+ MY +CG+  +A  +F
Sbjct: 555 IASITSVLLACTDIPSLWYGRAIH-GFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVF 613

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
             M  +    +NAMI  +   G   ++L LF  + ++    +  ++  ++S  + AG + 
Sbjct: 614 HMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVN 673

Query: 121 TARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
               LF DM  ++ +      +  ++    R G   EA+RL       L    Q DA IL
Sbjct: 674 EGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLI------LTMPFQPDAHIL 727

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
            +++ AC +   +E G+ +  H L      +S    +L N Y   G +   + + ++MK
Sbjct: 728 GSLLTACREHHEIELGEYLSKH-LFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 785


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/437 (30%), Positives = 211/437 (48%), Gaps = 33/437 (7%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           +R       L+L   +     F  N ++  + K G   ++ ++F+ MP  N F+ N L+S
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
             A +  +     LF  MP R+A+++N++I  +   G    +V+L++ L  +  E ++  
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLRE--ESVRPT 145

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
              L+ +I   + L+    G  +H  +L  G    + +GS LV++Y K G    A +V  
Sbjct: 146 RITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQ 205

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M+       + LI+G   C  + DA+ +F    D  S+ W +M++G   N    EAL +
Sbjct: 206 EMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDV 265

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +MR  GV  D  T  S+L+AC +L  LE GKQ+H +  +    D+V V SAL+D YSK
Sbjct: 266 FRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSK 325

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          C  I  A+ +FR M  +++ISW +MIVG 
Sbjct: 326 -------------------------------CRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            QN    EA+  F  M    ++ D F+L SVIS+CAN++SLE G Q      + GL    
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 472 IISTSLVDFYCKCGFIK 488
            +S +LV  Y KCG I+
Sbjct: 415 TVSNALVTLYGKCGSIE 431



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 156/280 (55%), Gaps = 1/280 (0%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+  Y K G    A +V + M +P+ F  +AL+S  A+   + D  R+F    +  +V +
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSY 113

Query: 273 NSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           N++I+G+ S      ++ L+  + R   V     TL++++   S+L     G  VH    
Sbjct: 114 NALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL 173

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           ++G      V S L+D Y+K G+  DA ++F E++    ++ NT+IT    C  IEDAK 
Sbjct: 174 RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKG 233

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F+ M ++  I+W +M+ GL+QNG  +EALD+F  M    + +D+++  S+++AC  +++
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           LE G+Q+ A +T    + +  + ++LVD Y KC  I++ E
Sbjct: 294 LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAE 333



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 193/428 (45%), Gaps = 72/428 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  + +++ + K+G    + ++F  M  K    +N LI+G  +   ++ A+ LF  M  R
Sbjct: 182 FVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDR 241

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++I W +M+    +NG   EA+ +F+ + +   E +  D +   +++ AC  LAALE GK
Sbjct: 242 DSITWTTMVTGLTQNGLQLEALDVFRRMRA---EGVGIDQYTFGSILTACGALAALEEGK 298

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH++I     + +  +GS+LV++Y K                               C 
Sbjct: 299 QIHAYITRTWYEDNVFVGSALVDMYSK-------------------------------CR 327

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A  VF R T  + + W +MI GY  N    EA+  F +M+ +G+  D  TL SV+S
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVIS 387

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C++L  LE G Q H  A   G++  + V++AL+  Y K G   DA +LF E+  +D + 
Sbjct: 388 SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              ++T                               G +Q G   E +DLF  M    L
Sbjct: 448 WTALVT-------------------------------GYAQFGKAKETIDLFEKMLANGL 476

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGFIK 488
           + D  +   V+SAC+    +E G   F  +     I+ +D      T ++D Y + G  K
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHY---TCMIDLYSRSGRFK 533

Query: 489 MDEYYLMQ 496
             E ++ Q
Sbjct: 534 EAEEFIKQ 541



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMR-YITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
              +  SW A++ G+ + G  ++++ LF  M     + +  ++  ++S  ++AG ++   
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M + + I      +  MI  Y R+G  +EA    K++          DAF  AT+
Sbjct: 501 DYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPH------SPDAFGWATL 554

Query: 179 IGACADLAALEYGKQIHSHIL 199
           + +C     +E GK    ++L
Sbjct: 555 LSSCRLRGNMEIGKWAAENLL 575


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/481 (29%), Positives = 234/481 (48%), Gaps = 92/481 (19%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           + +  +++  Y R     DAL LFDEMP R+  SWN+MI G ++ G    +++LF+ MP+
Sbjct: 66  VSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPE 125

Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
           ++  SW  +++G  ++G++  A  LF  MP ++  AWNSM+H Y++ G   +A++LFK++
Sbjct: 126 RSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQM 185

Query: 161 NS-------------DLVER-----------LQC----DAFILATVIGACADLAALEYGK 192
                          D  ER           L+C     +     VI ACA+  A   G 
Sbjct: 186 PGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGI 245

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H  I+  G  ++  + +SL+  Y  C                                
Sbjct: 246 QVHGLIIKLGFLYEEYVSASLITFYANC-------------------------------K 274

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           ++ D+R+VFD        +W +++SGY  N +  +AL +F  M RN +L + ST AS L+
Sbjct: 275 RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLN 334

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +CS+LG L+ GK++HG A K+G+  D  V ++L+  YS  G  +DA  +F  +K++    
Sbjct: 335 SCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVF--IKIF---- 388

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                                     KS++SWNS+IVG +Q+G    A  +F  M +L+ 
Sbjct: 389 -------------------------KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNK 423

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT--IIGLDSDQIISTSLVDFYCKCGFIKMD 490
             D+ +   ++SAC++   LE G ++F  ++  I  +D      T +VD   +CG +K  
Sbjct: 424 EPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEA 483

Query: 491 E 491
           E
Sbjct: 484 E 484



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           ++++AR VF++       ++  MI+GY  +N   +AL LF +M     + D  +  S++S
Sbjct: 50  RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMP----VRDVVSWNSMIS 105

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
            C   G +    ++     +  V+      +A+++   + G    A +LF ++ V DT  
Sbjct: 106 GCVECGDMNTAVKLFDEMPERSVVS----WTAMVNGCFRSGKVDQAERLFYQMPVKDTAA 161

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N+M+  Y   G+++DA  +F+ MP K++ISW +MI GL QN    EALDLF NM +  +
Sbjct: 162 WNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCI 221

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +        VI+ACAN  +  +G QV   +  +G   ++ +S SL+ FY  C  I
Sbjct: 222 KSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRI 276



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/341 (18%), Positives = 146/341 (42%), Gaps = 49/341 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    + H+G Q+H   +K G L     ++  L+  Y  C    D+  +FDE    
Sbjct: 231 VITACANAPAFHMGIQVHGLIIKLGFLYEEY-VSASLITFYANCKRIGDSRKVFDEKVHE 289

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS-------------W----- 106
               W A++ G+      E +L +F      +++P ++ F+             W     
Sbjct: 290 QVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMH 349

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+  ++ +G +  A ++F  + +++ ++WNS+I    ++G  +
Sbjct: 350 GVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGK 409

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL--VNGLDFDSVL 209
            A  +F ++   +    + D      ++ AC+    LE G+++  ++   +N +D     
Sbjct: 410 WAFVIFGQM---IRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQH 466

Query: 210 GSSLVNLYGKCGDFNSANQVLN-MMKEPDDFCLSALISG---YANCGKMNDARRVFDRTT 265
            + +V++ G+CG    A +++  M+ +P++    AL+S    +++  +   A        
Sbjct: 467 YTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLD 526

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
             SS  +  + + Y S    +    L  KM++NG+++   +
Sbjct: 527 SKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGS 567


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 226/453 (49%), Gaps = 50/453 (11%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           I++S +   NR +  YMR G    AL +F+ M RR+  ++NAMI G++     + + ++F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 96  NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
             MP ++  SWN+++SG+ K G L  AR LFN MP ++ ++WN+M+  + +NGF  EA +
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARK 174

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           +F ++                                 + + I  NG          L++
Sbjct: 175 IFDQM--------------------------------LVKNEISWNG----------LLS 192

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
            Y + G    A ++ +   + +    + L+ GY    +++DAR +FDR      + WN M
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIM 252

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I+GY  N   +EA  LF ++     + D     +++S     G L+   ++     +   
Sbjct: 253 ITGYAQNGLLSEARRLFEEL----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE--- 305

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             + +  +A++  Y +      A +LF ++   +T   NTM+T Y+ CG I+ AK +F  
Sbjct: 306 -KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDE 364

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MP +  ISW +MI G +Q+G   EAL LF  M +    +++ +LA  +S+CA I++LELG
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +Q+  R+   G  +  I   +L+  Y KCG I+
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIE 457



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 225/479 (46%), Gaps = 77/479 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y++ GN + A  LF++MP ++  SWNAM+ GF + G  E++ ++F+ M  KN+ 
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI 185

Query: 105 SWNMLIS-------------------------------GFAKAGELKTARTLFNDMPRRN 133
           SWN L+S                               G+ +   L  AR+LF+ MP R+
Sbjct: 186 SWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRD 245

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            I+WN MI  Y +NG   EA RLF+EL          D F    ++        L+   +
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEELPIR-------DVFAWTAMVSGFVQNGMLDEATR 298

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           I   +     + + V  ++++  Y +      A ++ + M   +    + +++GYA CG 
Sbjct: 299 IFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGN 354

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           ++ A+ +FD       + W +MISGY  + +  EAL LF KM+R+G + + S LA  LS+
Sbjct: 355 IDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSS 414

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+ +  LE GKQ+HG   K G     I  +ALL  Y K G   +A  +F ++   D +  
Sbjct: 415 CAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSW 474

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI  Y        A+H F                         EAL LF +M K+ ++
Sbjct: 475 NTMIAGY--------ARHGFGK-----------------------EALALFESM-KMTIK 502

Query: 434 MDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            D  +L  V+SAC++   ++ G + F +     G+ ++    T ++D   + G  ++DE
Sbjct: 503 PDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAG--RLDE 559



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 16/236 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L SC    ++ +GKQLH   +K G     +   N LL MY +CG+  +A  +F+++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA-GNALLAMYGKCGSIEEAFDVFEDI 466

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKAGELKTART 124
             ++  SWN MI G+ + G  +++L LF  M    + +D +   ++S  +  G +     
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGME 526

Query: 125 LFNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            FN M +   I  N+     MI    R G   EA+ L K +          DA     ++
Sbjct: 527 YFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMP------FYPDAATWGALL 580

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           GA       E G++    +     D +S +   L NLY   G +    ++ + M++
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPD-NSGMYVLLSNLYAASGRWREVREMRSKMRD 635


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 226/453 (49%), Gaps = 50/453 (11%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           I++S +   NR +  YMR G    AL +F+ M RR+  ++NAMI G++     + + ++F
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 96  NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
             MP ++  SWN+++SG+ K G L  AR LFN MP ++ ++WN+M+  + +NGF  EA +
Sbjct: 115 EKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARK 174

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           +F ++                                 + + I  NG          L++
Sbjct: 175 IFDQM--------------------------------LVKNEISWNG----------LLS 192

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
            Y + G    A ++ +   + +    + L+ GY    +++DAR +FDR      + WN M
Sbjct: 193 AYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIM 252

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I+GY  N   +EA  LF ++     + D     +++S     G L+   ++     +   
Sbjct: 253 ITGYAQNGLLSEARRLFEEL----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE--- 305

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             + +  +A++  Y +      A +LF ++   +T   NTM+T Y+ CG I+ AK +F  
Sbjct: 306 -KNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDE 364

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MP +  ISW +MI G +Q+G   EAL LF  M +    +++ +LA  +S+CA I++LELG
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELG 424

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +Q+  R+   G  +  I   +L+  Y KCG I+
Sbjct: 425 KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIE 457



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 225/479 (46%), Gaps = 77/479 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y++ GN + A  LF++MP ++  SWNAM+ GF + G  E++ ++F+ M  KN+ 
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI 185

Query: 105 SWNMLIS-------------------------------GFAKAGELKTARTLFNDMPRRN 133
           SWN L+S                               G+ +   L  AR+LF+ MP R+
Sbjct: 186 SWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRD 245

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            I+WN MI  Y +NG   EA RLF+EL          D F    ++        L+   +
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEELPIR-------DVFAWTAMVSGFVQNGMLDEATR 298

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           I   +     + + V  ++++  Y +      A ++ + M   +    + +++GYA CG 
Sbjct: 299 IFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGN 354

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           ++ A+ +FD       + W +MISGY  + +  EAL LF KM+R+G + + S LA  LS+
Sbjct: 355 IDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSS 414

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+ +  LE GKQ+HG   K G     I  +ALL  Y K G   +A  +F ++   D +  
Sbjct: 415 CAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSW 474

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI  Y        A+H F                         EAL LF +M K+ ++
Sbjct: 475 NTMIAGY--------ARHGFGK-----------------------EALALFESM-KMTIK 502

Query: 434 MDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            D  +L  V+SAC++   ++ G + F +     G+ ++    T ++D   + G  ++DE
Sbjct: 503 PDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAG--RLDE 559



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 16/236 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L SC    ++ +GKQLH   +K G     +   N LL MY +CG+  +A  +F+++
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA-GNALLAMYGKCGSIEEAFDVFEDI 466

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISGFAKAGELKTART 124
             ++  SWN MI G+ + G  +++L LF  M    + +D +   ++S  +  G +     
Sbjct: 467 TEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGME 526

Query: 125 LFNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            FN M +   I  N+     MI    R G   EA+ L K +          DA     ++
Sbjct: 527 YFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMP------FYPDAATWGALL 580

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           GA       E G++    +     D +S +   L NLY   G +    ++ + M++
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPD-NSGMYVLLSNLYAASGRWREVREMRSKMRD 635


>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
          Length = 794

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 159/569 (27%), Positives = 252/569 (44%), Gaps = 126/569 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LKKG        I  +L+  Y +C     A +LF ++
Sbjct: 38  GEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKL 97

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 98  RVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 157

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G L  AR +F+ +P RNA+AWN+++  YV+NG
Sbjct: 158 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNG 217

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  E+  + +E  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 218 MNEEAIRLLSEMRKEGIEPTR---VTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNI 274

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G                                +  A  +FD   +  
Sbjct: 275 LGTSILNFYCKVG-------------------------------LIEYAEMIFDGMIEKD 303

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      EA+ +   MRR  +  D  TL++++SA +S   L+ GK++  
Sbjct: 304 VVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 363

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  + G+  D+++AS  +D Y+K G   +A K+F      D IL NT+++ Y+  G    
Sbjct: 364 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 423

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK +F  M      PN  LISW +M
Sbjct: 424 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPN--LISWTTM 481

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA+     M +  LR + F++   +SACAN++SL  G  +   +    +
Sbjct: 482 MNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIHGYI----I 537

Query: 468 DSDQI-----ISTSLVDFYCKCGFIKMDE 491
            + Q      I TSLVD Y KCG I   E
Sbjct: 538 RNQQYSFSASIETSLVDMYAKCGDINKAE 566



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/510 (22%), Positives = 226/510 (44%), Gaps = 112/510 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FD +P RN 
Sbjct: 145 KACGALQWSRFGRGVHGYVAKAG-LHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNA 203

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++L + M ++               S NM            
Sbjct: 204 VAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAI 263

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G ++ A  +F+ M  ++ + WN +I  YV+ G   EA
Sbjct: 264 AIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEA 323

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +     E L+ D   L+T++ A      L+ GK+I  + + +GL+ D VL S+ 
Sbjct: 324 IYMCQLMRR---ENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTA 380

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG--------------------- 252
           V++Y KCG   +A +V +   + D    + L+S YA+ G                     
Sbjct: 381 VDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNV 440

Query: 253 --------------KMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHK 294
                         ++N+A+ +F +   +      + W +M++G + N    EA+L   K
Sbjct: 441 ITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRK 500

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ + +  +A T+   LSAC++L  L  G+ +HG+  +    +     SA ++T      
Sbjct: 501 MQESRLRPNAFTITVALSACANLASLHFGRSIHGYIIR----NQQYSFSASIET------ 550

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                               +++ +Y+ CG I  A+ +F +     L  +N+MI   +  
Sbjct: 551 --------------------SLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALY 590

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
           G   EA+ L+ ++    ++ D  ++ S++S
Sbjct: 591 GKVREAITLYRSLEDGGVKPDNITITSLLS 620



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 155/314 (49%), Gaps = 44/314 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +  +  ++ +GK++  + ++ G L S + +A+  + MY +CG+  +A  +FD  
Sbjct: 342 LSTLMSAATSTQNLKLGKEIQCYCIRHG-LESDIVLASTAVDMYAKCGSIVNAKKVFDST 400

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            +++   WN ++  +   G   ++L+LF  M       N  +WN++I    + G++  A+
Sbjct: 401 VQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAK 460

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N I+W +M++  V+NG + EA+   +++      RL+ +AF +   +
Sbjct: 461 EMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES---RLRPNAFTITVAL 517

Query: 180 GACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            ACA+LA+L +G+ IH +I+ N    F + + +SLV++Y K                   
Sbjct: 518 SACANLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAK------------------- 558

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG +N A RVF     +   ++N+MIS Y    +  EA+ L+  +   
Sbjct: 559 ------------CGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDG 606

Query: 299 GVLEDASTLASVLS 312
           GV  D  T+ S+LS
Sbjct: 607 GVKPDNITITSLLS 620



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 155/346 (44%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  REA+ L  E++      ++    I   ++  C     L  G+QIH+ IL      
Sbjct: 11  KNGEIREALSLVTEMD---YRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQIL------ 61

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                        K GDF + N+ +           + L+  YA C  +  A+ +F +  
Sbjct: 62  -------------KKGDFYARNEYIE----------TKLVIFYAKCDALEIAQVLFSKLR 98

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M  NG+  D   + +V  AC +L +   G+ 
Sbjct: 99  VRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRG 158

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+   V VAS+L D Y K G+  D                            
Sbjct: 159 VHGYVAKAGLHHCVFVASSLADMYGKCGVLDD---------------------------- 190

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
              A+ +F  +P+++ ++WN+++VG  QNG   EA+ L   M K  +   + ++++ +SA
Sbjct: 191 ---ARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSA 247

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + GL+ D I+ TS+++FYCK G I+  E
Sbjct: 248 SANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAE 293



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    + +  I   L+ MY +CG+   A  +F       
Sbjct: 517 LSACANLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSE 576

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG---ELKTARTLFND 128
              +NAMI  +   G   +++ L+  +        N+ I+         ++  A  +F+D
Sbjct: 577 LPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSCNYGRDVNQAIEVFSD 636

Query: 129 MPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           M  ++ +      +  M+      G   +A+RL +E+        + DA ++ ++  +C+
Sbjct: 637 MVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMP------YKPDARMVQSLFESCS 690

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
                E  + +  H+L +  D +S     + N Y   G ++   ++  MMK
Sbjct: 691 KQHKTELVEYLSKHLLESEPD-NSGNYVMISNAYAVEGSWDEVAKMREMMK 740


>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
          Length = 829

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 158/565 (27%), Positives = 251/565 (44%), Gaps = 118/565 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LK G        I  +L+  Y +C     A LLF ++
Sbjct: 69  GEILQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKL 128

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 129 RARNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGR 188

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G L  AR +F+++P R  +AWN+++  YV+NG
Sbjct: 189 GVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQNG 248

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             +EA+RL   + ++ +E  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 249 MNQEAIRLLSAMRNEGIEPTR---VTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNI 305

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G                                +  A  +FDR  +  
Sbjct: 306 LGTSILNFYCKVG-------------------------------LIEYAEMIFDRMIEKD 334

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      +A+ +   MRR  +  D  TL+S++SA +    L+ GK+V  
Sbjct: 335 VVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQC 394

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  + G + D+++AS  ++ Y+K G   DA K+F+     D IL NT++  Y+  G    
Sbjct: 395 YCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGE 454

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK +F  M      PN  LISW +M
Sbjct: 455 ALRLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPN--LISWTTM 512

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA+     M +  LR++ FS+   +SACAN++SL  G  +   +     
Sbjct: 513 MNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVALSACANLASLHFGRSIHGYIIRNQH 572

Query: 468 DSDQI-ISTSLVDFYCKCGFIKMDE 491
            S  + I TSLVD Y KCG I   E
Sbjct: 573 HSSSVSIETSLVDMYAKCGDISKAE 597



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/526 (21%), Positives = 226/526 (42%), Gaps = 113/526 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FDE+P R  
Sbjct: 176 KACGALQWSRFGRGVHGYVAKAG-LHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTV 234

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  +++++L + M  +               S NM            
Sbjct: 235 VAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSHAI 294

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 295 AIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDA 354

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +       L  D   L++++ A A    L+ GK++  + + +G   D VL S+ 
Sbjct: 355 IHMCQLMRRG---NLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSDIVLASTA 411

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF----------DR 263
           V +Y KCG    A +V N   E D    + L++ YA  G   +A R+F          + 
Sbjct: 412 VEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPPNV 471

Query: 264 TTDTSSVM-----------------------------WNSMISGYISNNEDTEALLLFHK 294
            T  S ++                             W +M++G + N    EA++   K
Sbjct: 472 ITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRK 531

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ +G+  +  ++   LSAC++L  L  G+ +HG+  +    +    +S  ++T      
Sbjct: 532 MQESGLRLNVFSITVALSACANLASLHFGRSIHGYIIR----NQHHSSSVSIET------ 581

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                               +++ +Y+ CG I  A+ +F +     L  +N+MI   +  
Sbjct: 582 --------------------SLVDMYAKCGDISKAERVFGSKLYSELPLYNAMISAYALY 621

Query: 415 GSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVF 459
           G+  EA  L+ ++++ + +  D  ++ +V+SAC +   +     +F
Sbjct: 622 GNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAGDINQAIHIF 667



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 156/321 (48%), Gaps = 45/321 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +    H++ +GK++  + ++ G + S + +A+  ++MY +CG+  DA  +F+  
Sbjct: 373 LSSLMSAAARTHNLKLGKEVQCYCIRHGFV-SDIVLASTAVEMYAKCGSIVDAKKVFNST 431

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + + G   ++L+LF  M       N  +WN +I    + G++  A+
Sbjct: 432 VEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAK 491

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N I+W +M++  V+NG + EA+   +++       L+ + F +   +
Sbjct: 492 DMFLQMQSSGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQES---GLRLNVFSITVAL 548

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            ACA+LA+L +G+ IH +I+ N     SV + +SLV++Y KCGD                
Sbjct: 549 SACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGD---------------- 592

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                          ++ A RVF     +   ++N+MIS Y       EA  L+  +  +
Sbjct: 593 ---------------ISKAERVFGSKLYSELPLYNAMISAYALYGNVKEATALYRSLDED 637

Query: 299 -GVLEDASTLASVLSACSSLG 318
            G+  D  T+ +VLSAC   G
Sbjct: 638 VGIEPDNITITNVLSACHHAG 658



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 110/233 (47%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    +S++ I   L+ MY +CG+ + A  +F       
Sbjct: 548 LSACANLASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYSE 607

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
              +NAMI  +   G+ +++  L+     +V  + ++ +   ++S    AG++  A  +F
Sbjct: 608 LPLYNAMISAYALYGNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAGDINQAIHIF 667

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
            DM  ++A+      +  M+      G   +A+RL +E+        + DA ++ +++ +
Sbjct: 668 TDMVSKHAMKPCLEHYGLMVDLLASAGETEKALRLIEEM------PYKPDARMIQSLLAS 721

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           C      E  + +  H+L +  + +S    ++ N+Y   G ++   ++  MMK
Sbjct: 722 CNKQHKSELVEYLSRHLLESEPE-NSGNYVTISNVYAVEGSWDEVGKMREMMK 773



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           N   IS+   +  L + G   EAL L   M   ++R+       ++  C     L  G+Q
Sbjct: 27  NPPSISYFHRVSSLCKKGEIREALGLVTEMGSRNVRIGPEIYGEILQGCVYERDLSTGQQ 86

Query: 458 VFARVTIIG--LDSDQIISTSLVDFYCKC 484
           + AR+   G     ++ I T LV FY KC
Sbjct: 87  IHARILKNGDFYAKNEYIETKLVIFYAKC 115


>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
          Length = 732

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 161/565 (28%), Positives = 251/565 (44%), Gaps = 118/565 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C    ++  GKQ+H   LKKG        I  +L+  Y +C     A LLF ++
Sbjct: 54  GEILQGCVYKRNLCTGKQIHARILKKGDFYARNEYIETKLVIFYAKCDALEIAELLFSKL 113

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 114 RVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 173

Query: 111 --------SGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                   +GF               K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 174 GVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEIPERNVVAWNALMVGYVQNG 233

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RLF ++  + VE  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 234 MNEEAIRLFSDMRKEGVEPTR---VTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNI 290

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G                             C +M     +FDR  +  
Sbjct: 291 LGTSILNFYCKVG--------------------------LIECAEM-----IFDRMVEKD 319

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      +A+ +   MR   +  D  TL++++SA +     + GK+V  
Sbjct: 320 VVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSKLGKEVQS 379

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  +  +  D+++AS  +D Y+K G   DA K+F      D IL NT++  Y+  G    
Sbjct: 380 YCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSGE 439

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK +F  M      PN  L+SW +M
Sbjct: 440 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIIPN--LVSWTTM 497

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA+     M +  LR + FS+   +SACAN++SL  G  +   +     
Sbjct: 498 MNGLVQNGCSEEAILFLRKMQESGLRPNVFSITVALSACANLASLHYGRSIHGYIIRNQR 557

Query: 468 DSDQI-ISTSLVDFYCKCGFIKMDE 491
               + I TSLVD Y KCG I   E
Sbjct: 558 HCSSVSIETSLVDMYAKCGDINKAE 582



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 236/525 (44%), Gaps = 112/525 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G  +    +A+ L  MY +CG   +A  +FDE+P RN 
Sbjct: 161 KACGALQWSRFGRGVHGYVVKAGFHDCVF-VASSLADMYGKCGVLDEARKVFDEIPERNV 219

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++LF+ M ++               S NM            
Sbjct: 220 VAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAI 279

Query: 109 ---------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                          +++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 280 AVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLISGYVQQGLVEDA 339

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           +R+ + +    +E L+ D   L+T++ A A     + GK++ S+ + + L+ D VL S+ 
Sbjct: 340 IRMCQSMR---LENLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLESDIVLASTA 396

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG--------------------- 252
           V++Y KCG    A +V +   + D    + L+  YA  G                     
Sbjct: 397 VDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSGEALRLFYEMQLESVPPNV 456

Query: 253 --------------KMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHK 294
                         ++N+A+ +F +   +      V W +M++G + N    EA+L   K
Sbjct: 457 ITWNLIILSLLRNGQVNEAKEMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSEEAILFLRK 516

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ +G+  +  ++   LSAC++L  L +G+ +HG+  +    +    +S  ++T      
Sbjct: 517 MQESGLRPNVFSITVALSACANLASLHYGRSIHGYIIR----NQRHCSSVSIET------ 566

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                               +++ +Y+ CG I  A+ +FR+     L  +N+MI G +  
Sbjct: 567 --------------------SLVDMYAKCGDINKAERVFRSKLYSELPLYNAMISGFAVY 606

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           G+  EA+ L+ ++  + ++ D  +  S++SAC +   +    ++F
Sbjct: 607 GNVKEAIGLYRSLEDMGIKPDSITFTSLLSACNHAGDINQAFEIF 651



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 167/366 (45%), Gaps = 64/366 (17%)

Query: 127 NDMPR-RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           +D  R R++ ++   +    ++G  REA+ L  E++     +++    I   ++  C   
Sbjct: 7   DDQARNRSSTSYFHRVSSLCKSGEIREALSLVTEMD---FRKIRIGPEIYGEILQGCVYK 63

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             L  GKQIH+ IL                   K GDF + N+ +           + L+
Sbjct: 64  RNLCTGKQIHARIL-------------------KKGDFYARNEYIE----------TKLV 94

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
             YA C  +  A  +F +    +   W ++I           AL+ F +M  NG+  D  
Sbjct: 95  IFYAKCDALEIAELLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNF 154

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
            + +V  AC +L +   G+ VHG+  K G  D V VAS+L D Y K G+  +A K+F E+
Sbjct: 155 VVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEI 214

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                                          P +++++WN+++VG  QNG   EA+ LF 
Sbjct: 215 -------------------------------PERNVVAWNALMVGYVQNGMNEEAIRLFS 243

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +M K  +   + ++++ +SA AN+  +E G+Q  A   + GL+ D I+ TS+++FYCK G
Sbjct: 244 DMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVG 303

Query: 486 FIKMDE 491
            I+  E
Sbjct: 304 LIECAE 309



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 154/320 (48%), Gaps = 44/320 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +        +GK++  + ++   L S + +A+  + MY +CG+  DA  +FD  
Sbjct: 358 LSTLMSAAARTQDSKLGKEVQSYCIRHS-LESDIVLASTAVDMYAKCGSIVDAKKVFDST 416

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            +++   WN ++  + + G   ++L+LF  M       N  +WN++I    + G++  A+
Sbjct: 417 VQKDLILWNTLLGAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAK 476

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N ++W +M++  V+NG + EA+   +++       L+ + F +   +
Sbjct: 477 EMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSEEAILFLRKMQES---GLRPNVFSITVAL 533

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            ACA+LA+L YG+ IH +I+ N     SV + +SLV++Y K                   
Sbjct: 534 SACANLASLHYGRSIHGYIIRNQRHCSSVSIETSLVDMYAK------------------- 574

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG +N A RVF     +   ++N+MISG+       EA+ L+  +   
Sbjct: 575 ------------CGDINKAERVFRSKLYSELPLYNAMISGFAVYGNVKEAIGLYRSLEDM 622

Query: 299 GVLEDASTLASVLSACSSLG 318
           G+  D+ T  S+LSAC+  G
Sbjct: 623 GIKPDSITFTSLLSACNHAG 642



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++     S++ I   L+ MY +CG+   A  +F       
Sbjct: 533 LSACANLASLHYGRSIHGYIIRNQRHCSSVSIETSLVDMYAKCGDINKAERVFRSKLYSE 592

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
              +NAMI GF   G+ ++++ L+  +     + +  ++  L+S    AG++  A  +F 
Sbjct: 593 LPLYNAMISGFAVYGNVKEAIGLYRSLEDMGIKPDSITFTSLLSACNHAGDINQAFEIFT 652

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKEL 160
           DM  ++ +      +  M+      G   +A+RL +E+
Sbjct: 653 DMVSKHGLKPCLEHYGLMVDLLASAGETDKALRLMEEM 690


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 245/491 (49%), Gaps = 77/491 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C++   +   K +H   +  G+    + +  +LL + ++ G+   A LLFD++
Sbjct: 42  LHHLLDQCSSMKRL---KLVHAQIILHGLAAQVVTLG-KLLSLCVQEGDLRYAHLLFDQI 97

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW----------------- 106
           P+ N F +N +I G+       KSL LF  M    P  N F++                 
Sbjct: 98  PQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAV 157

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N +++ +     + +AR +F+D+  R  ++WNSMI  Y + G
Sbjct: 158 IVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMG 217

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+ LF+E+   L   ++ D F L +++ A +    L+ G+ +H +I++ G++ DS+
Sbjct: 218 FCDEAILLFQEM---LQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSI 274

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+++Y KCG    A  V + M + D    +++++ YAN G + +A ++F+     +
Sbjct: 275 VTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKN 334

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNS+I   +   + TEA+ LFH+M  +GV+ D +TL S+LS CS+ G L  GKQ H 
Sbjct: 335 VVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHC 394

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           + C     D++I  S                            L N++I +Y+ CG ++ 
Sbjct: 395 YIC-----DNIITVS--------------------------VTLCNSLIDMYAKCGALQT 423

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  IF  MP K+++SWN +I  L+ +G   EA+++F +M    L  D+ +   ++SAC++
Sbjct: 424 AIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSH 483

Query: 449 ISSLELGEQVF 459
              +++G   F
Sbjct: 484 SGLVDMGRYYF 494



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 185/380 (48%), Gaps = 34/380 (8%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+S   + G+L+ A  LF+ +P+ N   +N +I  Y  +    +++ LF+++ S      
Sbjct: 77  LLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS---AGP 133

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             + F    V+ ACA  A   Y + +  H                              Q
Sbjct: 134 MPNQFTFPFVLKACA--AKPFYWEAVIVH-----------------------------AQ 162

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
            + +   P     +A+++ Y  C  +  AR+VFD  +D + V WNSMI+GY       EA
Sbjct: 163 AIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEA 222

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           +LLF +M + GV  D  TL S+LSA S    L+ G+ VH +    GV  D IV +AL+D 
Sbjct: 223 ILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDM 282

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K G    A  +F ++   D +   +M+  Y++ G +E+A  IF  MP K+++SWNS+I
Sbjct: 283 YAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSII 342

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
             L Q G   EA++LF  M    +  D  +L S++S C+N   L LG+Q    +    + 
Sbjct: 343 CCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIIT 402

Query: 469 SDQIISTSLVDFYCKCGFIK 488
               +  SL+D Y KCG ++
Sbjct: 403 VSVTLCNSLIDMYAKCGALQ 422



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 127/256 (49%), Gaps = 31/256 (12%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           L  L+S     G +  A  +FD+    +  M+N +I GY ++N+  ++LLLF +M   G 
Sbjct: 74  LGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGP 133

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           + +  T   VL AC++  F      VH  A K+G                   M   AC 
Sbjct: 134 MPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLG-------------------MGPHAC- 173

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                      + N ++T Y +C  I  A+ +F  + +++++SWNSMI G S+ G   EA
Sbjct: 174 -----------VQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEA 222

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           + LF  M +L +  D F+L S++SA +   +L+LG  V   + I G++ D I++ +L+D 
Sbjct: 223 ILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDM 282

Query: 481 YCKCGFIKMDEYYLMQ 496
           Y KCG ++  ++   Q
Sbjct: 283 YAKCGHLQFAKHVFDQ 298



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 111/237 (46%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C+    + +GKQ H  ++   I+  ++ + N L+ MY +CG    A+ +F  M
Sbjct: 373 LVSILSCCSNTGDLALGKQAHC-YICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGM 431

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P +N  SWN +I      G  E+++++F  M       ++ ++  L+S  + +G +   R
Sbjct: 432 PEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGR 491

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M     I+     +  M+    R GF  EA+ L +++       ++ D  +   +
Sbjct: 492 YYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKM------PVKPDVVVWGAL 545

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC     LE  KQI   +L  G  F+S L   L N+Y +   ++   ++  +M +
Sbjct: 546 LGACRIYGNLEIAKQIMKQLLELG-RFNSGLYVLLSNMYSESQRWDDMKKIRKIMDD 601


>gi|255578455|ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530403|gb|EEF32291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 718

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/518 (28%), Positives = 246/518 (47%), Gaps = 80/518 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDE 66
           A L Q C++  SI   +++  H +     N T PI   NR ++ Y +C    DA  LFDE
Sbjct: 61  ASLFQLCSSTLSIVEARKIESHLI---TFNPTPPIFLLNRAIETYGKCECLKDARELFDE 117

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------------- 105
           MP+R+  SWNA+I+ + + G+ EK+L LF  M ++  F+                     
Sbjct: 118 MPQRDGGSWNAIIKAYTQCGYAEKALGLFKDMNKEGVFANEITFASVLKSCSDVLDLSLS 177

Query: 106 ------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              + L+  + K   +  AR +FN++   N + WN ++  Y+  
Sbjct: 178 RQIHGLIVKCGFCGNVILGSALVDVYGKCKVMSEARLMFNEIENCNDVTWNVIVRRYLDV 237

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G  REAV++F ++    V  L    F  +  + AC+ + AL  G QIH+  +    + D 
Sbjct: 238 GNEREAVKMFFKMFQTDVRPLN---FTFSNALIACSAMRALNEGMQIHAFAIKIKFEEDE 294

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + SSL N+Y KCG   SA  + +     D    ++++S YA  G+  +AR +F++  + 
Sbjct: 295 AVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREARELFEKMPEW 354

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S V WN+M++GYI + +  EAL     MRR     D  TL  +L+ C+ +  +E GKQ H
Sbjct: 355 SVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAGISDVEMGKQAH 414

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   + G    ++V +ALLD Y K                               CG + 
Sbjct: 415 GFIYRHGFSSCILVGNALLDMYGK-------------------------------CGNLR 443

Query: 388 DAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            A+  F  M  ++  ISWN+++   +++    +A+ +F  M + + +   F+  ++++AC
Sbjct: 444 SARVWFYQMSQSRDNISWNALLTSYARHHQSEQAMMIFGEM-QWETKPSTFTFGTLLAAC 502

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ANI +L+ G+++   +   G + D +IS +LVD Y KC
Sbjct: 503 ANIFALDQGKEIHGFMIRNGYNLDTVISGALVDMYSKC 540



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 207/408 (50%), Gaps = 36/408 (8%)

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           E  L  FN  P    F  N  I  + K   LK AR LF++MP+R+  +WN++I  Y + G
Sbjct: 80  ESHLITFN--PTPPIFLLNRAIETYGKCECLKDARELFDEMPQRDGGSWNAIIKAYTQCG 137

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +A +A+ LFK++N    E +  +    A+V+ +C+D+  L   +QIH  I+  G   + +
Sbjct: 138 YAEKALGLFKDMNK---EGVFANEITFASVLKSCSDVLDLSLSRQIHGLIVKCGFCGNVI 194

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LGS+LV++YGK                               C  M++AR +F+   + +
Sbjct: 195 LGSALVDVYGK-------------------------------CKVMSEARLMFNEIENCN 223

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN ++  Y+    + EA+ +F KM +  V     T ++ L ACS++  L  G Q+H 
Sbjct: 224 DVTWNVIVRRYLDVGNEREAVKMFFKMFQTDVRPLNFTFSNALIACSAMRALNEGMQIHA 283

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K+   +D  V+S+L + Y+K G    A  +F +    D I   +M++ Y+  GR  +
Sbjct: 284 FAIKIKFEEDEAVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTRE 343

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  MP  S++SWN+M+ G  ++    EALD  C M +    +D  +L  +++ CA 
Sbjct: 344 ARELFEKMPEWSVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAG 403

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           IS +E+G+Q    +   G  S  ++  +L+D Y KCG ++    +  Q
Sbjct: 404 ISDVEMGKQAHGFIYRHGFSSCILVGNALLDMYGKCGNLRSARVWFYQ 451



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 197/452 (43%), Gaps = 105/452 (23%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   +++ G Q+H  F  K        +++ L  MY +CG    A ++FD+   R+
Sbjct: 266 LIACSAMRALNEGMQIHA-FAIKIKFEEDEAVSSSLSNMYAKCGKLESARMIFDQHGSRD 324

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
             S                               W  ++S +A +G  + AR LF  MP 
Sbjct: 325 VIS-------------------------------WTSMVSAYALSGRTREARELFEKMPE 353

Query: 132 RNAIAWNSMIHCYVRNGFAREA---VRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
            + ++WN+M+  Y+R+    EA   V L +    D+      D   L  ++  CA ++ +
Sbjct: 354 WSVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDI------DHITLGLLLNVCAGISDV 407

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
           E GKQ H  I  +G     ++G++L+++YGKC                            
Sbjct: 408 EMGKQAHGFIYRHGFSSCILVGNALLDMYGKC---------------------------- 439

Query: 249 ANCGKMNDARRVFDRTTDT-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              G +  AR  F + + +  ++ WN++++ Y  +++  +A+++F +M+         T 
Sbjct: 440 ---GNLRSARVWFYQMSQSRDNISWNALLTSYARHHQSEQAMMIFGEMQWE-TKPSTFTF 495

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            ++L+AC+++  L+ GK++HG   + G   D +++ AL+D YSK       C+       
Sbjct: 496 GTLLAACANIFALDQGKEIHGFMIRNGYNLDTVISGALVDMYSK-------CR------- 541

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                L+  +TV++  G             ++ +I WNS+I+G   NG   E L LF  M
Sbjct: 542 ----CLSYALTVFNRAG-------------SRDVILWNSIILGCCHNGRGKEVLKLFGQM 584

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF 459
            K  ++ D  +   V+ AC     ++L  + F
Sbjct: 585 EKEGVKPDHVTFHGVLLACMYEGHVKLAVEYF 616



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 40/198 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C     + +GKQ H    + G  +S + + N LL MY +CGN   A + F +M
Sbjct: 394 LGLLLNVCAGISDVEMGKQAHGFIYRHG-FSSCILVGNALLDMYGKCGNLRSARVWFYQM 452

Query: 68  PR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------------- 100
            + R+  SWNA++  + +    E+++ +F  M                            
Sbjct: 453 SQSRDNISWNALLTSYARHHQSEQAMMIFGEMQWETKPSTFTFGTLLAACANIFALDQGK 512

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  +N ++ + +ISG     ++K   L  A T+FN    R+ I WNS+I     NG
Sbjct: 513 EIHGFMIRNGYNLDTVISGALVDMYSKCRCLSYALTVFNRAGSRDVILWNSIILGCCHNG 572

Query: 149 FAREAVRLFKELNSDLVE 166
             +E ++LF ++  + V+
Sbjct: 573 RGKEVLKLFGQMEKEGVK 590



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 33/191 (17%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S  AS+   CSS   +   +++  H         + + +  ++TY K     DA +LF E
Sbjct: 58  SLYASLFQLCSSTLSIVEARKIESHLITFNPTPPIFLLNRAIETYGKCECLKDARELFDE 117

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   D    N +I  Y+ CG  E                               +AL LF
Sbjct: 118 MPQRDGGSWNAIIKAYTQCGYAE-------------------------------KALGLF 146

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +MNK  +  ++ + ASV+ +C+++  L L  Q+   +   G   + I+ ++LVD Y KC
Sbjct: 147 KDMNKEGVFANEITFASVLKSCSDVLDLSLSRQIHGLIVKCGFCGNVILGSALVDVYGKC 206

Query: 485 GFIKMDEYYLM 495
               M E  LM
Sbjct: 207 KV--MSEARLM 215



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++  GK++H   ++ G  N    I+  L+ MY +C   + AL +F+    R
Sbjct: 498 LLAACANIFALDQGKEIHGFMIRNG-YNLDTVISGALVDMYSKCRCLSYALTVFNRAGSR 556

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           +   WN++I G    G  ++ L+LF  M ++    +  +++ ++      G +K A   F
Sbjct: 557 DVILWNSIILGCCHNGRGKEVLKLFGQMEKEGVKPDHVTFHGVLLACMYEGHVKLAVEYF 616

Query: 127 NDM 129
           N M
Sbjct: 617 NSM 619


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 161/565 (28%), Positives = 246/565 (43%), Gaps = 118/565 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 74  GEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKL 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGR 193

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 194 GVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNG 253

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RLF ++  + VE  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 254 MNEEAIRLFSDMRKEGVEPTR---VTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNI 310

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+SL+N Y K G                                +  A  VFDR  D  
Sbjct: 311 LGTSLLNFYCKVG-------------------------------LIEYAEMVFDRMIDKD 339

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+       A+ +   MR   +  D  TLA+++SA +    L+ GK+V  
Sbjct: 340 VVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQC 399

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  +     D+++AS ++D Y+K G   DA K+F      D IL NT++  Y+  G    
Sbjct: 400 YCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGE 459

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                           +++AK +F  M      PN  LISW +M
Sbjct: 460 GLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPN--LISWTTM 517

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + G+ QNG   EA+     M +  LR +  S+   +SACAN++SL  G  +   +     
Sbjct: 518 MNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQ 577

Query: 468 DSDQI-ISTSLVDFYCKCGFIKMDE 491
            S  + I TSLVD Y KCG I   E
Sbjct: 578 HSSSVSIETSLVDMYAKCGDINKAE 602



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 227/513 (44%), Gaps = 114/513 (22%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 181 KACGALQWSRFGRGVHGYVVKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 239

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++LF+ M ++               S NM            
Sbjct: 240 VAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEEGKQSHAI 299

Query: 109 ---------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                          L++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G    A
Sbjct: 300 AIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISGYVQQGLVENA 359

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +    +E+L+ D   LAT++ A A    L+ GK++  + + +  + D VL S++
Sbjct: 360 IYMCQLMR---LEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTV 416

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------------ 261
           +++Y KCG    A +V +   E D    + L++ YA  G   +  R+F            
Sbjct: 417 MDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPPNV 476

Query: 262 ----------------DRTTD-----------TSSVMWNSMISGYISNNEDTEALLLFHK 294
                           D   D            + + W +M++G + N    EA+L   K
Sbjct: 477 ITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEEAILFLRK 536

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ +G+  +A ++   LSAC++L  L  G+ +HG+                         
Sbjct: 537 MQESGLRPNAVSITVALSACANLASLHFGRSIHGY------------------------- 571

Query: 355 PSDACKLFSELKVYDTILLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                 +   L+   ++ + T ++ +Y+ CG I  A+ +F +     L  +N+MI   + 
Sbjct: 572 ------IIRNLQHSSSVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYAL 625

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            G+  EA+ L+ ++  + L+ D  ++ +V+SAC
Sbjct: 626 YGNLKEAIALYRSLEGVGLKPDNITITNVLSAC 658



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  +EA+ L  E++      L+    I   ++  C     L  GKQIH+ IL NG   
Sbjct: 47  KNGEIKEALSLVTEMD---FRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG--- 100

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + N+ +           + L+  YA C  ++ A  +F +  
Sbjct: 101 ----------------DFYAKNEYIE----------TKLVIFYAKCDALDIAEVLFTKLR 134

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M  N +  D   + +V  AC +L +   G+ 
Sbjct: 135 VRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRG 194

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+ D V VAS+L D Y K                               CG 
Sbjct: 195 VHGYVVKAGLEDCVFVASSLADMYGK-------------------------------CGV 223

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++DA+ +F  +P +++++WN+++VG  QNG   EA+ LF +M K  +   + ++++ +SA
Sbjct: 224 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSA 283

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + GL+ D I+ TSL++FYCK G I+  E
Sbjct: 284 SANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAE 329



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 153/320 (47%), Gaps = 44/320 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +     ++ +GK++  + ++     S + +A+ ++ MY +CG+  DA  +FD  
Sbjct: 378 LATLMSAAARTQNLKLGKEVQCYCIRHS-FESDIVLASTVMDMYAKCGSIVDAKKVFDST 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + + G   + L+LF  M       N  +WN++I    + GE+  A+
Sbjct: 437 AEKDLILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAK 496

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N I+W +M++  V+NG + EA+   +++       L+ +A  +   +
Sbjct: 497 DMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEEAILFLRKMQES---GLRPNAVSITVAL 553

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            ACA+LA+L +G+ IH +I+ N     SV + +SLV++Y K                   
Sbjct: 554 SACANLASLHFGRSIHGYIIRNLQHSSSVSIETSLVDMYAK------------------- 594

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG +N A +VF     +   ++N+MIS Y       EA+ L+  +   
Sbjct: 595 ------------CGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEAIALYRSLEGV 642

Query: 299 GVLEDASTLASVLSACSSLG 318
           G+  D  T+ +VLSAC+  G
Sbjct: 643 GLKPDNITITNVLSACNHAG 662



 Score = 42.0 bits (97), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           ++TI +N   +V S   +    +H  + + N S  S+   +  L +NG   EAL L   M
Sbjct: 6   FNTIPINLPFSVSS---KPSSKQHDDQAL-NPSSTSYFHRVSSLCKNGEIKEALSLVTEM 61

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCG 485
           +  +LR+       ++  C     L  G+Q+ AR+   G     ++ I T LV FY KC 
Sbjct: 62  DFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCD 121

Query: 486 FIKMDE 491
            + + E
Sbjct: 122 ALDIAE 127


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/506 (28%), Positives = 242/506 (47%), Gaps = 68/506 (13%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           A  LL  Y R G   DA  +FD MP RN  +WNAM+  +++ G    + +LF+ MP ++ 
Sbjct: 98  ATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDV 157

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            SWN +++G+  + ++  A  LF  MP+RN + W  MI  YVR     +   +F+ ++ +
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHE 217

Query: 164 LVERLQCD-AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-CG 221
                Q + A +L+ V G   DL  LE  + +   +L  G + D V+G+S++N+Y +   
Sbjct: 218 GASPDQSNFASVLSAVTG-LQDLGVLEVLRPL---VLKTGFESDVVIGTSILNVYTRDAS 273

Query: 222 DFNSANQVLNMMKEPDDFCLS-------------------------------ALISGYAN 250
             + A +  + M E +++  S                               AL++G A 
Sbjct: 274 ALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLAR 333

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYI------------------------------ 280
           CG++ +AR +F++  D   V WN+MI+GY+                              
Sbjct: 334 CGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGY 393

Query: 281 -SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             N    EAL L   + RNG+L   S+L S   ACS +G LE G+QVH  A K G   + 
Sbjct: 394 AQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNS 453

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V +AL+  Y K        ++F+ ++V DT+  N+ I        +EDA+HIF  M ++
Sbjct: 454 YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR 513

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            ++SW ++I   +Q     EA++ F  M     + +   L  ++S C  + S +LG+Q+ 
Sbjct: 514 DVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIH 573

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCG 485
                 G+DS+ I++ +L+  Y KCG
Sbjct: 574 TVAIKHGMDSELIVANALMSMYFKCG 599



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 209/460 (45%), Gaps = 68/460 (14%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPRRNCFSWNAMI----------- 79
           LK G   S + I   +L +Y R  +  D A+  FD M  RN ++W+ MI           
Sbjct: 250 LKTG-FESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDA 308

Query: 80  --------------------EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
                                G  + G   ++  LF  +P     SWN +I+G+ + G +
Sbjct: 309 AIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMV 368

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             A+ LF+ MP RN I+W  MI  Y +NG + EA+ L + L+ +    +      L +  
Sbjct: 369 DEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRN---GMLPSLSSLTSSF 425

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            AC+ + ALE G+Q+HS  +  G  F+S + ++L+++YGKC +     QV N M+  D  
Sbjct: 426 LACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
             ++ I+       + DAR +FD       V W ++IS Y       EA+  F  M    
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH 545

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              ++  L  +LS C  LG  + G+Q+H  A K G+  ++IVA+AL+  Y K        
Sbjct: 546 EKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFK-------- 597

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                                  CG   D+  +F +M  + + +WN+ I G +Q+G   E
Sbjct: 598 -----------------------CG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGRE 633

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           A+ ++ +M  + +  ++ +   +++AC++   ++ G Q F
Sbjct: 634 AIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFF 673



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 209/443 (47%), Gaps = 32/443 (7%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G   +A  +FD MP R+  +WN+MI  +   G  E +  LF+ +   N  +  +L+SG
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSG 104

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +A+ G +  AR +F+ MP RN +AWN+M+ CYV+NG    A RLF  + S  V       
Sbjct: 105 YARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWN--- 161

Query: 173 FILATVIGACAD---LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
              + V G C     + A    KQ+    LV      S  G   +  +GK  D      +
Sbjct: 162 ---SMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMIS--GYVRIEQHGKGWD------I 210

Query: 230 LNMMKE----PDDFCLSALIS---GYANCGKMNDARRVFDRTT-DTSSVMWNSMISGYIS 281
             MM      PD    ++++S   G  + G +   R +  +T  ++  V+  S+++ Y  
Sbjct: 211 FRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVY-- 268

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
              D  AL +  K     V  +  T +++++A S  G ++    V+G       +  +  
Sbjct: 269 -TRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGR----DPVKSIPS 323

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +ALL   ++ G  ++A  LF ++     +  N MIT Y   G +++AK +F  MP ++ 
Sbjct: 324 QTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNT 383

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ISW  MI G +QNG   EALDL   +++  +     SL S   AC++I +LE G QV + 
Sbjct: 384 ISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSL 443

Query: 462 VTIIGLDSDQIISTSLVDFYCKC 484
               G   +  +  +L+  Y KC
Sbjct: 444 AVKAGCQFNSYVCNALISMYGKC 466



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 10/256 (3%)

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V ++ +  D    SA I   A  G++ +AR VFD       + WNSMIS Y ++    +A
Sbjct: 24  VRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDA 83

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLD 347
            +LF  +    V     T   +LS  + LG +   ++V       G+ +   VA +A++ 
Sbjct: 84  RILFDAISGGNV----RTATILLSGYARLGRVLDARRVFD-----GMPERNTVAWNAMVS 134

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y + G  + A +LF  +   D    N+M+T Y    ++ DA ++F+ MP ++L++W  M
Sbjct: 135 CYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVM 194

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G  +     +  D+F  M+      D+ + ASV+SA   +  L + E +   V   G 
Sbjct: 195 ISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGF 254

Query: 468 DSDQIISTSLVDFYCK 483
           +SD +I TS+++ Y +
Sbjct: 255 ESDVVIGTSILNVYTR 270



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C    S  +G+Q+H   +K G ++S L +AN L+ MY +CG   D+  +FD M
Sbjct: 553 LTILLSVCGGLGSAKLGQQIHTVAIKHG-MDSELIVANALMSMYFKCGC-ADSHKVFDSM 610

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             R+ F+WN  I G  + G   ++++++  M       N+ ++  L++  + AG +    
Sbjct: 611 EERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGW 670

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M R   +      +  M+    R G  + A +   ++       ++ D  I + +
Sbjct: 671 QFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMP------IEPDTVIWSAL 724

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS--LVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      E G++    +        S  G+   L N+Y   G +    ++  +MK+
Sbjct: 725 LGACKIHKNAEIGRRAAEKLFTTE---PSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQ 780


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/452 (30%), Positives = 224/452 (49%), Gaps = 52/452 (11%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           +S +   N  +  YMR G   +AL +F  MPR +  S+N MI G+++ G  E + +LF+ 
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 98  MPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
           MP+++  SWN++I G+ +   L  AR LF  MP R+  +WN+M+  Y +NG   +A  +F
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
             +       +  +A + A V  +  + A + + K   +  LV+   ++ +LG      +
Sbjct: 181 DRMPEK--NDVSWNALLSAYVQNSKMEEACMLF-KSRENWALVS---WNCLLGG-----F 229

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            K      A Q  + M   D    + +I+GYA  GK+++AR++FD +       W +M+S
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289

Query: 278 GYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           GYI N    EA  LF KM  RN V                                    
Sbjct: 290 GYIQNRMVEEARELFDKMPERNEV------------------------------------ 313

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
                 +A+L  Y +      A +LF  +   +    NTMIT Y+ CG+I +AK++F  M
Sbjct: 314 ----SWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 369

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P +  +SW +MI G SQ+G   EAL LF  M +   R+++ S +S +S CA++ +LELG+
Sbjct: 370 PKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGK 429

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           Q+  R+   G ++   +  +L+  YCKCG I+
Sbjct: 430 QLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461



 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 233/508 (45%), Gaps = 92/508 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R G    A  LFDEMP R+  SWN MI+G+++  +  K+ +LF +MP+++  
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-- 162
           SWN ++SG+A+ G +  AR++F+ MP +N ++WN+++  YV+N    EA  LFK   +  
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218

Query: 163 ---------------DLVERLQC-------DAFILATVIGACADLAALEYGKQIHSHILV 200
                           +VE  Q        D     T+I   A    ++  +Q+     V
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPV 278

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---------------- 244
                D    +++V+ Y +      A ++ + M E ++   +A+                
Sbjct: 279 Q----DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKEL 334

Query: 245 ---------------ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                          I+GYA CGK+++A+ +FD+      V W +MI+GY  +    EAL
Sbjct: 335 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEAL 394

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF +M R G   + S+ +S LS C+ +  LE GKQ+HG   K G      V +ALL  Y
Sbjct: 395 RLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 454

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K G   +A  LF E+   D +  NTMI  YS        +H F  +             
Sbjct: 455 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS--------RHGFGEV------------- 493

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLD 468
                     AL  F +M +  L+ D  ++ +V+SAC++   ++ G Q F  +T   G+ 
Sbjct: 494 ----------ALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVM 543

Query: 469 SDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            +      +VD   + G ++ D + LM+
Sbjct: 544 PNSQHYACMVDLLGRAGLLE-DAHNLMK 570



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 208/448 (46%), Gaps = 90/448 (20%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           I NR+++         +A  LFD+MP RN  SWNAM+ G+++    E + +LF+VMP +N
Sbjct: 292 IQNRMVE---------EARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN 342

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             +WN +I+G+A+ G++  A+ LF+ MP+R+ ++W +MI  Y ++G + EA+RLF ++  
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           +   RL   +F  ++ +  CAD+ ALE GKQ+H  ++  G +    +G++L+ +Y KC  
Sbjct: 403 E-GGRLNRSSF--SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-- 457

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                        G + +A  +F        V WN+MI+GY  +
Sbjct: 458 -----------------------------GSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIV 341
                AL  F  M+R G+  D +T+ +VLSACS  G ++ G+Q  +      GV+ +   
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548

Query: 342 ASALLDTYSKRGMPSDACKLFSELK------VYDTILLNTMI------------------ 377
            + ++D   + G+  DA  L   +       ++ T+L  + +                  
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608

Query: 378 -----------TVYSSCGRIEDAKHIFRTMPNKSL-----ISW-----NSMIVGLSQNGS 416
                       +Y+S GR  D   +   M +K +      SW      +    +     
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 668

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVIS 444
           P E  ++F  + +LDLRM K    S  S
Sbjct: 669 P-EKDEIFAFLEELDLRMKKAGYVSKTS 695



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQLH   +K G       + N LL MY +CG+  +A  LF EM  ++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCF-VGNALLLMYCKCGSIEEANDLFKEMAGKD 474

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI G+ + G  E +L+ F  M ++    +D +   ++S  +  G +   R  F 
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534

Query: 128 DMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +  NS     M+    R G   +A  L K +        + DA I  T++GA 
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP------FEPDAAIWGTLLGAS 588

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 E  +     I     + +S +   L NLY   G +    ++   M++
Sbjct: 589 RVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 158/569 (27%), Positives = 251/569 (44%), Gaps = 126/569 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LKKG        I  +L+  Y +C     A +LF ++
Sbjct: 50  GEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKL 109

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 110 RVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 169

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G L  AR +F+ +P RNA+AWN+++  YV+NG
Sbjct: 170 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNG 229

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  E+  + +E  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 230 MYEEAIRLLSEMRKEGIEPTR---VTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNI 286

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G                                +  A  +FD   +  
Sbjct: 287 LGTSILNFYCKVG-------------------------------LIEYAEMIFDGMIEKD 315

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      EA+ +   MRR  +  D  TL++++SA +S   L+ GK++  
Sbjct: 316 VVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 375

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  + G+  D+++AS  +D Y+K G   +A K+F      D IL NT+++ Y+  G    
Sbjct: 376 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 435

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK +F  M      PN  LISW +M
Sbjct: 436 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPN--LISWTTM 493

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA+     M +  LR + F++   +SAC N++SL  G  +   +    +
Sbjct: 494 MNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRSIHGYI----I 549

Query: 468 DSDQI-----ISTSLVDFYCKCGFIKMDE 491
            + Q      I TSLVD Y KCG I   E
Sbjct: 550 RNQQYSFSASIETSLVDMYAKCGDINKAE 578



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 228/512 (44%), Gaps = 112/512 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FD +P RN 
Sbjct: 157 KACGALQWSRFGRGVHGYVAKAG-LHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNA 215

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++L + M ++               S NM            
Sbjct: 216 VAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAI 275

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G ++ A  +F+ M  ++ + WN +I  YV+ G   EA
Sbjct: 276 AIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEA 335

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +     E L+ D   L+T++ A      L+ GK+I  + + +GL+ D VL S+ 
Sbjct: 336 IYMCQLMRR---ENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTA 392

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG--------------------- 252
           V++Y KCG   +A +V +   + D    + L+S YA+ G                     
Sbjct: 393 VDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNV 452

Query: 253 --------------KMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHK 294
                         ++N+A+ +F +   +      + W +M++G + N    EA+L   K
Sbjct: 453 ITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRK 512

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ +G+  +A T+   LSAC +L  L  G+ +HG+  +    +     SA ++T      
Sbjct: 513 MQESGLRPNAFTITVALSACVNLASLHFGRSIHGYIIR----NQQYSFSASIET------ 562

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                               +++ +Y+ CG I  A+ +F +     L  +N+MI   +  
Sbjct: 563 --------------------SLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALY 602

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           G   EA+ L+ ++    ++ D  ++ S++SAC
Sbjct: 603 GKVREAITLYRSLEDGGVKPDNITITSLLSAC 634



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 185/401 (46%), Gaps = 74/401 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +  +  ++ +GK++  + ++ G L S + +A+  + MY +CG+  +A  +FD  
Sbjct: 354 LSTLMSAATSTQNLKLGKEIQCYCIRHG-LESDIVLASTAVDMYAKCGSIVNAKKVFDST 412

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            +++   WN ++  +   G   ++L+LF  M       N  +WN++I    + G++  A+
Sbjct: 413 VQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAK 472

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N I+W +M++  V+NG + EA+   +++       L+ +AF +   +
Sbjct: 473 EMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES---GLRPNAFTITVAL 529

Query: 180 GACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            AC +LA+L +G+ IH +I+ N    F + + +SLV++Y K                   
Sbjct: 530 SACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAK------------------- 570

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG +N A RVF     +   ++N+MIS Y    +  EA+ L+  +   
Sbjct: 571 ------------CGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDG 618

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           GV  D  T+ S+LSAC+      +G+ V+  A +V             D  SK GM    
Sbjct: 619 GVKPDNITITSLLSACN------YGRDVN-QAIEV-----------FRDMVSKHGM--KP 658

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           C     L+ Y       M+ + +S G  + A  +   MP K
Sbjct: 659 C-----LEHY-----GLMVDLLASAGETDKALRLMEEMPYK 689



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  REA+ L  E++      ++    I   ++  C     L  G+QIH+ IL      
Sbjct: 23  KNGEIREALSLVTEMD---YRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQIL------ 73

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                        K GDF + N+ +           + L+  YA C  +  A+ +F +  
Sbjct: 74  -------------KKGDFYARNEYIE----------TKLVIFYAKCDALEIAQVLFSKLR 110

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M  NG+  D   + +V  AC +L +   G+ 
Sbjct: 111 VRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRG 170

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+   V VAS+L D Y K G+  DA K+F                       
Sbjct: 171 VHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFD---------------------- 208

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                     +P+++ ++WN+++VG  QNG   EA+ L   M K  +   + ++++ +SA
Sbjct: 209 ---------YIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSA 259

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + GL+ D I+ TS+++FYCK G I+  E
Sbjct: 260 SANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAE 305



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 100/232 (43%), Gaps = 16/232 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    + +  I   L+ MY +CG+   A  +F       
Sbjct: 529 LSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSE 588

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
              +NAMI  +   G   +++ L+  +     + ++ +   L+S      ++  A  +F 
Sbjct: 589 LPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFR 648

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           DM  ++ +      +  M+      G   +A+RL +E+        + DA ++ ++  +C
Sbjct: 649 DMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMP------YKPDARMVQSLFESC 702

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +     E  + +  H+L +  D +S     + N Y   G ++   ++  MMK
Sbjct: 703 SKQHKTELVEYLSKHLLESEPD-NSGNYVMISNAYAVEGSWDEVAKMREMMK 753


>gi|413917533|gb|AFW57465.1| hypothetical protein ZEAMMB73_932577 [Zea mays]
          Length = 677

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 217/472 (45%), Gaps = 71/472 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y R G   DA  LFD MPRR+  SW A++  + + G    +  +F+ MP++N  
Sbjct: 43  NALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDMPRRNAV 102

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN L+S +  AG    A  LF   P +NA+++  +I    R G  REA  ++ E+   L
Sbjct: 103 SWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGLARAGMLREAQAVYGEMPPRL 162

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            + +  +A IL                                         Y + G+ +
Sbjct: 163 RDPVGSNAMILG----------------------------------------YLRAGEID 182

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V + M   D    S+++ G    G +++ARR+F+   + + V W SM+ GY+    
Sbjct: 183 MALRVFDTMAARDVISWSSMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMVRGYVKCGM 242

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             E LLLF  MRR GV  +A TL+ VL  C+    +  G QVH    ++G + D+ +  +
Sbjct: 243 YREGLLLFLDMRREGVQVNAITLSVVLDGCAQASLVGEGIQVHCLMTRMGFVTDIFLDGS 302

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YS+ G   DA ++F+ +K  D +  N++IT Y     IEDA  +F+ MP +  ISW
Sbjct: 303 LIIMYSRFGWMVDARRVFAFMKQKDIVSWNSLITGYVQNNMIEDAHVLFKLMPERDAISW 362

Query: 405 NSMIVGLSQNGSPIEALDL-------------------------------FCNMNKLDLR 433
            S++VG +  G   E+++L                               FC M++   R
Sbjct: 363 TSVVVGFANRGWMRESVELFEQMPVKDDIAWTAVISSFIANGNHVSVVRWFCQMSQEGCR 422

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  + + ++SA A+++ L  G Q  A    +G   D  +  SLV  Y KCG
Sbjct: 423 PNTAAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCG 474



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 216/469 (46%), Gaps = 68/469 (14%)

Query: 53  RCGNPTDALLLFDEMPRR--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           R G   +A  ++ EMP R  +    NAMI G+++ G  + +L++F+ M  ++  SW+ ++
Sbjct: 144 RAGMLREAQAVYGEMPPRLRDPVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMV 203

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
            G  K G +  AR LF  MP RN ++W SM+  YV+ G  RE + LF ++     E +Q 
Sbjct: 204 DGLCKYGTVSEARRLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRR---EGVQV 260

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +A  L+ V+  CA  + +  G Q+H  +   G   D  L  SL+ +Y + G    A +V 
Sbjct: 261 NAITLSVVLDGCAQASLVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVF 320

Query: 231 NMMKEPDDFCLSALISGY-------------------------------ANCGKMNDARR 259
             MK+ D    ++LI+GY                               AN G M ++  
Sbjct: 321 AFMKQKDIVSWNSLITGYVQNNMIEDAHVLFKLMPERDAISWTSVVVGFANRGWMRESVE 380

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F++      + W ++IS +I+N      +  F +M + G   + +  + +LSA +SL  
Sbjct: 381 LFEQMPVKDDIAWTAVISSFIANGNHVSVVRWFCQMSQEGCRPNTAAFSCLLSALASLAM 440

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G Q H +A  +G I                               +D+ +  +++T+
Sbjct: 441 LNQGLQAHAYAVNMGWI-------------------------------FDSAVHASLVTM 469

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+ CGR+ +A  +F  + N SL++ NSMI   +Q+G   +AL LF  M     R +  + 
Sbjct: 470 YAKCGRLAEAHRVFSCIRNPSLVAINSMISAFAQHGLAEDALKLFNRMQYDGQRPNHVTF 529

Query: 440 ASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
             +++ACA    ++ G   F  + ++ G+  +    T +V+     GF+
Sbjct: 530 LGILTACARAGLVQQGYNYFESMRSVYGIQPNPDHYTCMVNLLGHAGFL 578



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 137/277 (49%), Gaps = 6/277 (2%)

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+  YG+ G    A Q+ + M   D    +AL++ YA  G    AR VFD     ++V
Sbjct: 43  NALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDMPRRNAV 102

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN+++S Y+       A  LF K       ++A +   +++  +  G L   + V+G  
Sbjct: 103 SWNALLSLYLGAGRPAAAHALFCKT----PAKNAVSYGVIITGLARAGMLREAQAVYGEM 158

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
                + D + ++A++  Y + G    A ++F  +   D I  ++M+      G + +A+
Sbjct: 159 PPR--LRDPVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCKYGTVSEAR 216

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  MP ++++SW SM+ G  + G   E L LF +M +  ++++  +L+ V+  CA  S
Sbjct: 217 RLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVVLDGCAQAS 276

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +  G QV   +T +G  +D  +  SL+  Y + G++
Sbjct: 277 LVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWM 313



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 6/170 (3%)

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           + H      H   V V+ +    +ALL +Y +RG   DA +LF  +   D I    ++T 
Sbjct: 20  VPHRLATPEHPLPVRVLPNRAHLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTA 79

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+  G    A+ +F  MP ++ +SWN+++      G P  A  LFC         +  S 
Sbjct: 80  YAEGGDFASARLVFDDMPRRNAVSWNALLSLYLGAGRPAAAHALFCKTPA----KNAVSY 135

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             +I+  A    L   + V+  +       D + S +++  Y + G I M
Sbjct: 136 GVIITGLARAGMLREAQAVYGEMP--PRLRDPVGSNAMILGYLRAGEIDM 183


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 210/413 (50%), Gaps = 32/413 (7%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++  +   G    + ++F+ MP +N  + N L+S  A+AG ++    LF  +P+R+A+
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAV 109

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           ++N+++  + R G    A   +  L  D    ++     ++ V+   + L     G+Q+H
Sbjct: 110 SYNALLAGFSRAGAHARAAGAYVALLRDEAG-VRPSRITMSGVVMVASALGDRALGRQVH 168

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             IL  G    +  GS LV++Y K G    A +V + M+  +    + +I+G   C  + 
Sbjct: 169 CQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVA 228

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +AR +F+   +  S+ W +M++G   N  ++EAL +F +MR  GV  D  T  S+L+AC 
Sbjct: 229 EARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACG 288

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +L  LE GKQ+H +  +    D+V V SAL+D YSK                        
Sbjct: 289 ALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSK------------------------ 324

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  C  +  A+ +FR M  K++ISW +MIVG  QNG   EA+ +F  M +  ++ D
Sbjct: 325 -------CRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPD 377

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            F+L SVIS+CAN++SLE G Q      + GL     +S +LV  Y KCG I+
Sbjct: 378 DFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIE 430



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 195/428 (45%), Gaps = 72/428 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ + +++ + K+G    + ++F+ M  KN    N +I+G  +   +  AR LF  +  R
Sbjct: 181 FTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEER 240

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++I W +M+    +NG   EA+ +F+ + +   E +  D +   +++ AC  LAALE GK
Sbjct: 241 DSITWTTMVTGLTQNGLESEALDVFRRMRA---EGVGIDQYTFGSILTACGALAALEEGK 297

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH++I     + +  +GS+LV++Y K                               C 
Sbjct: 298 QIHAYITRTCYEDNVFVGSALVDMYSK-------------------------------CR 326

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A  VF R    + + W +MI GY  N    EA+ +F +M+R+G+  D  TL SV+S
Sbjct: 327 SVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVIS 386

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C++L  LE G Q H  A   G+   V V++AL+  Y K G   DA +LF E+  +D + 
Sbjct: 387 SCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 446

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              ++  Y                               +Q G   E +DLF  M    +
Sbjct: 447 WTALVMGY-------------------------------AQFGKAKETIDLFEKMLSKGV 475

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGFIK 488
           + D  +   V+SAC+    ++ G   F  +     I+ LD      T ++D Y + G++K
Sbjct: 476 KPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHY---TCMIDLYSRSGWLK 532

Query: 489 MDEYYLMQ 496
             E ++ Q
Sbjct: 533 QAEEFIKQ 540



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 148/282 (52%), Gaps = 2/282 (0%)

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+  Y   G    A +V + M   +    ++L+S  A  G + D  R+F       +V 
Sbjct: 51  TLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVS 110

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           +N++++G+        A   +  + R+  GV     T++ V+   S+LG    G+QVH  
Sbjct: 111 YNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQ 170

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             ++G        S L+D Y+K G   DA ++F E++  + ++ NTMIT    C  + +A
Sbjct: 171 ILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEA 230

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  +  +  I+W +M+ GL+QNG   EALD+F  M    + +D+++  S+++AC  +
Sbjct: 231 RALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGAL 290

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++LE G+Q+ A +T    + +  + ++LVD Y KC  +++ E
Sbjct: 291 AALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAE 332



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 80/364 (21%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----- 99
           N ++   +RC    +A  LF+ +  R+  +W  M+ G  + G + ++L +F  M      
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVG 274

Query: 100 ----------------------------------QKNDFSWNMLISGFAKAGELKTARTL 125
                                             + N F  + L+  ++K   ++ A  +
Sbjct: 275 IDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAV 334

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  M  +N I+W +MI  Y +NG   EAVR+F E+  D +   + D F L +VI +CA+L
Sbjct: 335 FRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGI---KPDDFTLGSVISSCANL 391

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
           A+LE G Q H   LV+GL     + ++LV LYGK                          
Sbjct: 392 ASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGK-------------------------- 425

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
                CG + DA R+FD  +    V W +++ GY    +  E + LF KM   GV  D  
Sbjct: 426 -----CGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGV 480

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACK----VGVIDDVIVASALLDTYSKRGMPSDACKL 361
           T   VLSACS  G ++ G+  + H+ +    +  +DD    + ++D YS+ G    A + 
Sbjct: 481 TFIGVLSACSRSGLVDKGRS-YFHSMQQDHDIVPLDDHY--TCMIDLYSRSGWLKQAEEF 537

Query: 362 FSEL 365
             ++
Sbjct: 538 IKQM 541



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 18/202 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G L   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 381 LGSVISSCANLASLEEGAQFHCLALVSG-LRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
              +  SW A++ G+ + G  ++++ LF  M  K    +  ++  ++S  +++G +   R
Sbjct: 440 SFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGR 499

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILAT 177
           + F+ M + + I      +  MI  Y R+G+ ++A    K++        +C DAF  AT
Sbjct: 500 SYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMP-------RCPDAFGWAT 552

Query: 178 VIGACADLAALEYGKQIHSHIL 199
           ++ AC     +E GK    ++L
Sbjct: 553 LLSACRLRGDMEIGKWAAENLL 574



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 33/151 (21%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T LLNT++T Y+S G +  A+ +F  MP ++L++ NS++  L++ G   +   LF ++ +
Sbjct: 46  TYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQ 105

Query: 430 LD---------------------------------LRMDKFSLASVISACANISSLELGE 456
            D                                 +R  + +++ V+   + +    LG 
Sbjct: 106 RDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGR 165

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           QV  ++  +G  +     + LVD Y K G I
Sbjct: 166 QVHCQILRLGFGAYAFTGSPLVDMYAKVGPI 196


>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
          Length = 784

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 160/569 (28%), Positives = 251/569 (44%), Gaps = 126/569 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LKKG        I  +L+  Y +C     A +LF ++
Sbjct: 51  GEILQGCVYERDLCTGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKL 110

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 111 RVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGR 170

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G L  AR +F+ +P RNA+AWN+++  YV+NG
Sbjct: 171 GVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNG 230

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  E+  + +E  +     ++T + A A++  +E GKQ H+  +VNGL  D++
Sbjct: 231 MNEEAIRLLSEMRKEGIEPTR---VTVSTCLSASANMGGIEEGKQSHAXXIVNGLXLDNI 287

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y                      C   LI           A  +FD   +  
Sbjct: 288 LGTSILNFY----------------------CXVGLI---------EYAEMIFDGMIEKX 316

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      EA+ +   MRR  +  D  TL++++SA +S   L+ GK++  
Sbjct: 317 XVTWNLLISGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQC 376

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  + G+  D+++AS  +D Y+K G   +A K+F      D IL NT+++ Y+  G    
Sbjct: 377 YCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGE 436

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK +F  M      PN  LISW +M
Sbjct: 437 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPN--LISWTTM 494

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA+     M +  LR + F++   +SACAN++SL  G  +   +    +
Sbjct: 495 MNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACANLASLHFGRSIHGYI----I 550

Query: 468 DSDQI-----ISTSLVDFYCKCGFIKMDE 491
            + Q      I TSLVD Y KCG I   E
Sbjct: 551 RNQQYSFSAWIETSLVDMYAKCGDINKAE 579



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/512 (23%), Positives = 227/512 (44%), Gaps = 112/512 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FD +P RN 
Sbjct: 158 KACGALQWSRFGRGVHGYVAKAG-LHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNA 216

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++L + M ++               S NM            
Sbjct: 217 VAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAX 276

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              +   G ++ A  +F+ M  +  + WN +I  YV+ G   EA
Sbjct: 277 XIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISGYVQQGLVEEA 336

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +     E L+ D   L+T++ A      L+ GK+I  + + +GL+ D VL S+ 
Sbjct: 337 IHMCQLMRR---ENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTA 393

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG--------------------- 252
           V++Y KCG   +A +V +   + D    + L+S YA+ G                     
Sbjct: 394 VDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNV 453

Query: 253 --------------KMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHK 294
                         ++N+A+ +F +   +      + W +M++G + N    EA+L   K
Sbjct: 454 ITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRK 513

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ +G+  +A T+   LSAC++L  L  G+ +HG+  +    +     SA ++T      
Sbjct: 514 MQESGLRPNAFTITVALSACANLASLHFGRSIHGYIIR----NQQYSFSAWIET------ 563

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                               +++ +Y+ CG I  A+ +F +     L  +N+MI   +  
Sbjct: 564 --------------------SLVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALY 603

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           G   EA+ L+ ++    ++ D  ++ S++SAC
Sbjct: 604 GKVREAITLYRSLEDGGVKPDNITITSLLSAC 635



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 187/401 (46%), Gaps = 74/401 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +  +  ++ +GK++  + ++ G L S + +A+  + MY +CG+  +A  +FD  
Sbjct: 355 LSTLMSAATSTQNLKLGKEIQCYCIRHG-LESDIVLASTAVDMYAKCGSIVNAKKVFDST 413

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            +++   WN ++  +   G   ++L+LF  M       N  +WN++I    + G++  A+
Sbjct: 414 VQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAK 473

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N I+W +M++  V+NG + EA+   +++       L+ +AF +   +
Sbjct: 474 EMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQES---GLRPNAFTITVAL 530

Query: 180 GACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            ACA+LA+L +G+ IH +I+ N    F + + +SLV++Y K                   
Sbjct: 531 SACANLASLHFGRSIHGYIIRNQQYSFSAWIETSLVDMYAK------------------- 571

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG +N A RVF     +   ++N+MIS Y    +  EA+ L+  +   
Sbjct: 572 ------------CGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDG 619

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           GV  D  T+ S+LSAC+      +G+ V+     + V  D++         SK GM    
Sbjct: 620 GVKPDNITITSLLSACN------YGRDVNQ---AIEVFSDMV---------SKHGM--KP 659

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           C     L+ Y       M+ + +S G  + A  +   MP K
Sbjct: 660 C-----LEHY-----GLMVDLLASAGETDKALRLMEEMPYK 690



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 153/346 (44%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  REA+ L  E++      ++    I   ++  C     L  G+QIH+ IL      
Sbjct: 24  KNGEIREALSLVTEMD---YRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQIL------ 74

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                        K GDF + N+ +           + L+  YA C  +  A+ +F +  
Sbjct: 75  -------------KKGDFYARNEYIE----------TKLVIFYAKCDALEIAQVLFSKLR 111

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M  NG+  D   + +V  AC +L +   G+ 
Sbjct: 112 VRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRG 171

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+   V VAS+L D Y K G+  D                            
Sbjct: 172 VHGYVAKAGLHHCVFVASSLADMYGKCGVLDD---------------------------- 203

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
              A+ +F  +P+++ ++WN+++VG  QNG   EA+ L   M K  +   + ++++ +SA
Sbjct: 204 ---ARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSA 260

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + GL  D I+ TS+++FYC  G I+  E
Sbjct: 261 SANMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAE 306



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 101/232 (43%), Gaps = 16/232 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    + +  I   L+ MY +CG+   A  +F       
Sbjct: 530 LSACANLASLHFGRSIHGYIIRNQQYSFSAWIETSLVDMYAKCGDINKAERVFGSKLCSE 589

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
              +NAMI  +   G   +++ L+  +     + ++ +   L+S      ++  A  +F+
Sbjct: 590 LPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFS 649

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           DM  ++ +      +  M+      G   +A+RL +E+        + DA ++ ++  +C
Sbjct: 650 DMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMP------YKPDARMVQSLFESC 703

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +     E  + +  H+L +  D +S     + N Y   G ++   ++  MMK
Sbjct: 704 SKQHKTELVEYLSKHLLESEPD-NSGNYVMISNAYAVEGSWDEVAKMREMMK 754


>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
 gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
          Length = 679

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/472 (29%), Positives = 215/472 (45%), Gaps = 71/472 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y R G   DA  LFD MP R+  SW A++  +  +G+   +  +F+ MP +N  
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN L+S + +AG    A  LF   P +NA+++ ++I    R G  REA  ++ E+    
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRW 164

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            + +  +A I                                          Y + G+  
Sbjct: 165 RDPVGSNAMIWG----------------------------------------YLRGGELG 184

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V + M   D    SA++ G    G +++ARR+F+   + + V W SMI GY+ +  
Sbjct: 185 MALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGM 244

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             + LLLF  MRR GV  +  TL+ VL  C+    ++ G QVH    ++G  +D+ +  +
Sbjct: 245 YRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDS 304

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YS+ G  +DA  LFS +   D +  N++IT Y     IEDA  +F+ MP K  ISW
Sbjct: 305 LIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISW 364

Query: 405 NSMIVG-------------------------------LSQNGSPIEALDLFCNMNKLDLR 433
            SM+VG                               L  NG+ + A+  FC M++   R
Sbjct: 365 TSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCR 424

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  + + ++SA A+++ L  G Q  A    +G   D  +  SLV  Y KCG
Sbjct: 425 PNTVAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCG 476



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 230/478 (48%), Gaps = 39/478 (8%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSW----------------------------- 75
           N L+ +Y+R G P  A  LF + P +N  S+                             
Sbjct: 107 NALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRWRD 166

Query: 76  ----NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
               NAMI G+++ G    +L++F+ M  ++  SW+ ++ G  K G +  AR LF  MP 
Sbjct: 167 PVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAMPE 226

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           RN ++W SMI  YV++G  R+ + LF ++     E +Q +   L+ V+  CA  + ++ G
Sbjct: 227 RNVVSWTSMIRGYVKHGMYRDGLLLFLDMRR---EGVQVNMITLSVVLDGCAQASLVDEG 283

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
            Q+H  ++  G   D  LG SL+ +Y + G    A  + + M + D    ++LI+GY   
Sbjct: 284 SQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQN 343

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
             + DA  +F    +  ++ W SM+ G+ +     E++ LF +M     +  A+ ++S++
Sbjct: 344 DMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSLV 403

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD-TYSKRGMPSDACKLFSELKVYDT 370
           +  + +  +    Q+    C+   +    + SAL       +G+ + A  + +   ++D+
Sbjct: 404 ANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAV-NMGWIFDS 462

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            +  +++T+Y+ CGR+ +A  +F  + + SLI+ NSMI   +Q+G   +A  LF  M   
Sbjct: 463 AVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAFKLFNRMQYD 522

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
             R +  +   +++ACA    ++ G   F  + ++ G+  +    T +VD   + GF+
Sbjct: 523 GQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGRAGFL 580



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 35/316 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C     +  G Q+H   ++ G       + + L+ MY R G+  DA  LF  M
Sbjct: 267 LSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIF-LGDSLIIMYSRFGSMADARSLFSFM 325

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  SWN++I G+++    E +  LF +MP+K+  SW  ++ GFA  G ++ +  LF 
Sbjct: 326 NQKDIVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFE 385

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ IAW +++   V NG    AVR F +++    E  + +    + ++ A A LA 
Sbjct: 386 QMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQ---EGCRPNTVAFSCLLSALASLAM 442

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G Q H++ +  G  FDS + +SLV +Y KCG    A++V + +  P     +++I+ 
Sbjct: 443 LNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITA 502

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +A  G   DA ++F+R                               M+ +G   +  T 
Sbjct: 503 FAQHGLAEDAFKLFNR-------------------------------MQYDGQRPNHVTF 531

Query: 308 ASVLSACSSLGFLEHG 323
             +L+AC+  G ++HG
Sbjct: 532 LGILTACARAGLVQHG 547



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 124/277 (44%), Gaps = 29/277 (10%)

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           P+   L+AL++ Y   G++ DA+++FDR      + W ++++ Y        A  +F  M
Sbjct: 39  PNRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDM 98

Query: 296 R-RNGV--------------------------LEDASTLASVLSACSSLGFLEHGKQVHG 328
             RN                             ++A +  ++++  +  G L   + V+ 
Sbjct: 99  PLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                    D + ++A++  Y + G    A ++F  +   D I  + M+      G + +
Sbjct: 159 EMPP--RWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSE 216

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  MP ++++SW SMI G  ++G   + L LF +M +  ++++  +L+ V+  CA 
Sbjct: 217 ARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQ 276

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            S ++ G QV   +  +G   D  +  SL+  Y + G
Sbjct: 277 ASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFG 313


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 210/437 (48%), Gaps = 33/437 (7%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           +R       L+L   +     F  N ++  + K G   ++ ++F+ MP  N F+ N L+S
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
             A +  +     LF  MP R+A+++N++I  +   G    +V+L++ L  +  E ++  
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLRE--ESVRPT 145

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
              L+ +I   + L+    G  +H  +L  G    + +GS LV++Y K G    A +V  
Sbjct: 146 RITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQ 205

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M+       + LI+G   C  + DA+ +F    D  S+ W +M++G   N    EAL +
Sbjct: 206 EMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDV 265

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +MR  GV  D  T  S+L+AC +L   E GKQ+H +  +    D+V V SAL+D YSK
Sbjct: 266 FRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSK 325

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          C  I  A+ +FR M  +++ISW +MIVG 
Sbjct: 326 -------------------------------CRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            QN    EA+  F  M    ++ D F+L SVIS+CAN++SLE G Q      + GL    
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 472 IISTSLVDFYCKCGFIK 488
            +S +LV  Y KCG I+
Sbjct: 415 TVSNALVTLYGKCGSIE 431



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 155/280 (55%), Gaps = 1/280 (0%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+  Y K G    A +V + M +P+ F  +AL+S  A+   + D  R+F    +  +V +
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSY 113

Query: 273 NSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           N++I+G+ S      ++ L+  + R   V     TL++++   S+L     G  VH    
Sbjct: 114 NALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL 173

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           ++G      V S L+D Y+K G+  DA ++F E++    ++ NT+IT    C  IEDAK 
Sbjct: 174 RLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKG 233

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F+ M ++  I+W +M+ GL+QNG  +EALD+F  M    + +D+++  S+++AC  +++
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            E G+Q+ A +T    + +  + ++LVD Y KC  I++ E
Sbjct: 294 SEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAE 333



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 192/428 (44%), Gaps = 72/428 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  + +++ + K+G    + ++F  M  K    +N LI+G  +   ++ A+ LF  M  R
Sbjct: 182 FVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDR 241

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++I W +M+    +NG   EA+ +F+ + +   E +  D +   +++ AC  LAA E GK
Sbjct: 242 DSITWTTMVTGLTQNGLQLEALDVFRRMRA---EGVGIDQYTFGSILTACGALAASEEGK 298

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH++I     + +  +GS+LV++Y                               + C 
Sbjct: 299 QIHAYITRTWYEDNVFVGSALVDMY-------------------------------SKCR 327

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A  VF R T  + + W +MI GY  N    EA+  F +M+ +G+  D  TL SV+S
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVIS 387

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C++L  LE G Q H  A   G++  + V++AL+  Y K G   DA +LF E+  +D + 
Sbjct: 388 SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS 447

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              ++T                               G +Q G   E +DLF  M    L
Sbjct: 448 WTALVT-------------------------------GYAQFGKAKETIDLFEKMLVNGL 476

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGFIK 488
           + D  +   V+SAC+    +E G   F  +     I+ +D      T ++D Y + G  K
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHY---TCMIDLYSRSGRFK 533

Query: 489 MDEYYLMQ 496
             E ++ Q
Sbjct: 534 EAEEFIKQ 541



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 167/414 (40%), Gaps = 114/414 (27%)

Query: 40  TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99
           T+ + N L+   +RC    DA  LF  M  R+  +W  M+ G  + G + ++L +F  M 
Sbjct: 211 TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMR 270

Query: 100 ---------------------------------------QKNDFSWNMLISGFAKAGELK 120
                                                  + N F  + L+  ++K   ++
Sbjct: 271 AEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIR 330

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            A  +F  M  RN I+W +MI  Y +N  + EAVR F E+  D +   + D F L +VI 
Sbjct: 331 LAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI---KPDDFTLGSVIS 387

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           +CA+LA+LE G Q H   LV+GL     + ++LV LYGK                     
Sbjct: 388 SCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGK--------------------- 426

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                     CG + DA R+FD  +    V W ++++GY    +  E + LF KM  NG+
Sbjct: 427 ----------CGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGL 476

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T   VLSACS  G +E G                                   C 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKG-----------------------------------CD 501

Query: 361 LFSEL-KVYDTILLNT----MITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMI 408
            F  + K +D + ++     MI +YS  GR ++A+   + MP+      W +++
Sbjct: 502 YFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLL 555



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 121/281 (43%), Gaps = 53/281 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    +   GKQ+H  ++ +      + + + L+ MY +C +   A  +F  M  R
Sbjct: 284 ILTACGALAASEEGKQIHA-YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCR 342

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW-------------------- 106
           N  SW AMI G+ +    E++++ F+ M     + +DF+                     
Sbjct: 343 NIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFH 402

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L++ + K G ++ A  LF++M   + ++W +++  Y + G A+
Sbjct: 403 CLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAK 462

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-----KQIHSHILVNGLDFD 206
           E + LF+++   LV  L+ D      V+ AC+    +E G          H +V   D  
Sbjct: 463 ETIDLFEKM---LVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHY 519

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALIS 246
           +     +++LY + G F  A + +  M   PD F  + L+S
Sbjct: 520 TC----MIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 16/201 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G++   + ++N L+ +Y +CG+  DA  LFDEM
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVSGLMR-YITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
              +  SW A++ G+ + G  ++++ LF  M     + +  ++  ++S  ++AG ++   
Sbjct: 441 SFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGC 500

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M + + I      +  MI  Y R+G  +EA    K++          DAF  AT+
Sbjct: 501 DYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPH------SPDAFGWATL 554

Query: 179 IGACADLAALEYGKQIHSHIL 199
           + +C     +E GK    ++L
Sbjct: 555 LSSCRLRGNMEIGKWAAENLL 575


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/472 (29%), Positives = 215/472 (45%), Gaps = 71/472 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y R G   DA  LFD MP R+  SW A++  +  +G+   +  +F+ MP +N  
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN L+S + +AG    A  LF   P +NA+++ ++I    R G  REA  ++ E+    
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRW 164

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            + +  +A I                                          Y + G+  
Sbjct: 165 RDPVGSNAMIWG----------------------------------------YLRGGELG 184

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V + M   D    SA++ G    G +++ARR+F+   + + V W SMI GY+ +  
Sbjct: 185 MALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGM 244

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             + LLLF  MRR GV  +  TL+ VL  C+    ++ G QVH    ++G  +D+ +  +
Sbjct: 245 YRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDS 304

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YS+ G  +DA  LFS +   D +  N++IT Y     IEDA  +F+ MP K  ISW
Sbjct: 305 LIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISW 364

Query: 405 NSMIVG-------------------------------LSQNGSPIEALDLFCNMNKLDLR 433
            SM+VG                               L  NG+ + A+  FC M++   R
Sbjct: 365 TSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCR 424

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  + + ++SA A+++ L  G Q  A    +G   D  +  SLV  Y KCG
Sbjct: 425 PNTVAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCG 476



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 230/478 (48%), Gaps = 39/478 (8%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSW----------------------------- 75
           N L+ +Y+R G P  A  LF + P +N  S+                             
Sbjct: 107 NALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRWRD 166

Query: 76  ----NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
               NAMI G+++ G    +L++F+ M  ++  SW+ ++ G  K G +  AR LF  MP 
Sbjct: 167 PVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAMPE 226

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           RN ++W SMI  YV++G  R+ + LF ++     E +Q +   L+ V+  CA  + ++ G
Sbjct: 227 RNVVSWTSMIRGYVKHGMYRDGLLLFLDMRR---EGVQVNMITLSVVLDGCAQASLVDEG 283

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
            Q+H  ++  G   D  LG SL+ +Y + G    A  + + M + D    ++LI+GY   
Sbjct: 284 SQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQN 343

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
             + DA  +F    +  ++ W SM+ G+ +     E++ LF +M     +  A+ ++S++
Sbjct: 344 DMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSLV 403

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD-TYSKRGMPSDACKLFSELKVYDT 370
           +  + +  +    Q+    C+   +    + SAL       +G+ + A  + +   ++D+
Sbjct: 404 ANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAV-NMGWIFDS 462

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            +  +++T+Y+ CGR+ +A  +F  + + SLI+ NSMI   +Q+G   +A  LF  M   
Sbjct: 463 AVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAFKLFNRMQYD 522

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
             R +  +   +++ACA    ++ G   F  + ++ G+  +    T +VD   + GF+
Sbjct: 523 GQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGRAGFL 580



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 35/316 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C     +  G Q+H   ++ G       + + L+ MY R G+  DA  LF  M
Sbjct: 267 LSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIF-LGDSLIIMYSRFGSMADARSLFSFM 325

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  SWN++I G+++    E +  LF +MP+K+  SW  ++ GFA  G ++ +  LF 
Sbjct: 326 NQKDIVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFE 385

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ IAW +++   V NG    AVR F +++    E  + +    + ++ A A LA 
Sbjct: 386 QMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQ---EGCRPNTVAFSCLLSALASLAM 442

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G Q H++ +  G  FDS + +SLV +Y KCG    A++V + +  P     +++I+ 
Sbjct: 443 LNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITA 502

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +A  G   DA ++F+R                               M+ +G   +  T 
Sbjct: 503 FAQHGLAEDAFKLFNR-------------------------------MQYDGQRPNHVTF 531

Query: 308 ASVLSACSSLGFLEHG 323
             +L+AC+  G ++HG
Sbjct: 532 LGILTACARAGLVQHG 547



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 124/277 (44%), Gaps = 29/277 (10%)

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           P+   L+AL++ Y   G++ DA+++FDR      + W ++++ Y        A  +F  M
Sbjct: 39  PNRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDM 98

Query: 296 R-RNGV--------------------------LEDASTLASVLSACSSLGFLEHGKQVHG 328
             RN                             ++A +  ++++  +  G L   + V+ 
Sbjct: 99  PLRNAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                    D + ++A++  Y + G    A ++F  +   D I  + M+      G + +
Sbjct: 159 EMPP--RWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSE 216

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  MP ++++SW SMI G  ++G   + L LF +M +  ++++  +L+ V+  CA 
Sbjct: 217 ARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQ 276

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            S ++ G QV   +  +G   D  +  SL+  Y + G
Sbjct: 277 ASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFG 313


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 207/376 (55%), Gaps = 6/376 (1%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           FAK+G L  AR +F +MP R+A++W  M+    R G   EA++   ++ +D     Q   
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ--- 58

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           F L  V+ +CA   A   G+++HS ++  GL     + +S++N+YGKCGD  +A  V   
Sbjct: 59  FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFER 118

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           M        +A++S   + G+M+ A  +F+   D S V WN+MI+GY  N  D +AL LF
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 293 HKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
            +M   + +  D  T+ SVLSAC++LG +  GKQVH +  +  +  +  V +AL+ TY+K
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 238

Query: 352 RGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            G   +A ++  +    D   I    ++  Y   G +E A+ +F  M N+ +++W +MIV
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 298

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G  QNG   EA+DLF +M       + ++LA+V+S CA+++ L+ G+Q+  R     L+ 
Sbjct: 299 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQ 358

Query: 470 DQIISTSLVDFYCKCG 485
              +S +++  Y + G
Sbjct: 359 SSSVSNAIITMYARSG 374



 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 222/458 (48%), Gaps = 68/458 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    +  VG+++H   +K G L S +P+AN +L MY +CG+           
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLG-LGSCVPVANSVLNMYGKCGD----------- 108

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                E +  +F  MP ++  SWN ++S     G +  A +LF 
Sbjct: 109 --------------------SETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFE 148

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP R+ ++WN+MI  Y +NG   +A++LF  +  +    +  D F + +V+ ACA+L  
Sbjct: 149 SMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE--SSMAPDEFTITSVLSACANLGN 206

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD--DFCLSALI 245
           +  GKQ+H++IL   + ++S + ++L++ Y K G   +A ++++   E D      +AL+
Sbjct: 207 VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 266

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G M  AR +F    +   V W +MI GY  N  + EA+ LF  M   G   ++ 
Sbjct: 267 EGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 326

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA+VLS C+SL  L++GKQ+H                               C+    L
Sbjct: 327 TLAAVLSVCASLACLDYGKQIH-------------------------------CRAIRSL 355

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
               + + N +IT+Y+  G    A+ +F +    K  I+W SMIV L+Q+G   EA+ LF
Sbjct: 356 LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLF 415

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
             M +  +  D+ +   V+SAC++   +  G++ + ++
Sbjct: 416 EEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQI 453



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 134/242 (55%), Gaps = 1/242 (0%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +A  G++ DAR VF    +  +V W  M+ G        EA+     M  +G      TL
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            +VLS+C+       G++VH    K+G+   V VA+++L+ Y K G    A  +F  + V
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                 N M+++ +  GR++ A+ +F +MP++S++SWN+MI G +QNG   +AL LF  M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 428 -NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
            ++  +  D+F++ SV+SACAN+ ++ +G+QV A +    +  +  ++ +L+  Y K G 
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241

Query: 487 IK 488
           ++
Sbjct: 242 VE 243



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 176/393 (44%), Gaps = 82/393 (20%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNML 109
           +R G    A +L  EM   +  + NA+I  + K G  E + ++ +   +   N  S+  L
Sbjct: 207 VRIGKQVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 265

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           + G+ K G++++AR +F  M  R+ +AW +MI  Y +NG   EA+ LF+ +   +    +
Sbjct: 266 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM---ITCGPE 322

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            +++ LA V+  CA LA L+YGKQIH   + + L+      SS+ N              
Sbjct: 323 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE----QSSSVSN-------------- 364

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEA 288
                        A+I+ YA  G    ARR+FD+      ++ W SMI     + +  EA
Sbjct: 365 -------------AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 411

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG--------------HACKVG 334
           + LF +M R GV  D  T   VLSACS  GF+  GK+ +               +AC V 
Sbjct: 412 VGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMV- 470

Query: 335 VIDDVIVASALLDTYSK--RGMPSD-----------ACKL-----FSELKVYDTILLN-- 374
              D++  + L     +  R MP +           AC++      +EL     + ++  
Sbjct: 471 ---DLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPN 527

Query: 375 ------TMITVYSSCGRIEDAKHIFRTMPNKSL 401
                  +  VYS+CGR  DA  I++    K++
Sbjct: 528 NSGAYSAIANVYSACGRWSDAARIWKARKEKAV 560



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 62/107 (57%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +++  GR+ DA+ +F  MP +  +SW  M+VGL++ G   EA+    +M        +F+
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           L +V+S+CA   +  +G +V + V  +GL S   ++ S+++ Y KCG
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCG 107



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 111/243 (45%), Gaps = 28/243 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C +   +  GKQ+H   ++  +L  +  ++N ++ MY R G+   A  +FD++
Sbjct: 328 LAAVLSVCASLACLDYGKQIHCRAIRS-LLEQSSSVSNAIITMYARSGSFPWARRMFDQV 386

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTA 122
             R+   +W +MI    + G  E+++ LF  M     + +  ++  ++S  + AG +   
Sbjct: 387 CWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEG 446

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +  ++ +   + IA     +  M+    R G   EA    + +       ++ DA    +
Sbjct: 447 KRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP------VEPDAIAWGS 500

Query: 178 VIGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           ++ AC     A+LA L   K      L++    +S   S++ N+Y  CG ++ A ++   
Sbjct: 501 LLSACRVHKNAELAELAAEK------LLSIDPNNSGAYSAIANVYSACGRWSDAARIWKA 554

Query: 233 MKE 235
            KE
Sbjct: 555 RKE 557


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 238/473 (50%), Gaps = 45/473 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++ +Y + G    A  LFD+MPRRN  SWN M+ G++  G  +++ +LF +MP+++ F
Sbjct: 10  NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLF 69

Query: 105 SWNMLISGFAKAGELKTARTLFNDMP---RRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           SW ++I+ + + GE++ AR LF+ +P   R+    WN+MI  YV+ G   EA RLF E+ 
Sbjct: 70  SWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMP 129

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
              V+ L     +LA           LE+  ++           D V  + +V+ + + G
Sbjct: 130 ---VKNLISWNSMLAGYTQNRKMRLGLEFFNEMDER--------DVVSWNLMVDGFIQVG 178

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           D +SA +     ++P+      ++SG+A  G + ++RR+FD+    + V WN+MIS Y+ 
Sbjct: 179 DLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQ 238

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH----------AC 331
             E  EA  LF +M       D+ +  ++++    +G L+  +++             A 
Sbjct: 239 RCEIDEASRLFEEMPE----RDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAM 294

Query: 332 KVGVID-----------------DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
             G I                  DV+  +A++  Y+  G  ++A  L   +   D +  N
Sbjct: 295 ISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWN 354

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           TMI+ Y+  G+++ A  IF  M  + L+SWNS+I G   NG  ++AL  F  M     + 
Sbjct: 355 TMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKP 414

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           D+ S A  +S+CA I++L++G Q+   V   G  +  +++ +L+  Y KCG I
Sbjct: 415 DQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRI 467



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 220/467 (47%), Gaps = 76/467 (16%)

Query: 31  FLKKGILNST------LPIANRLLQMYMRCGNPTD-----ALLLFDEMPRRNCFSWNAMI 79
           ++KKG +N        +P+ N +    M  G   +      L  F+EM  R+  SWN M+
Sbjct: 112 YVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMV 171

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           +GF+++G  + + + F    + N  SW  ++SGFA+ G +  +R LF+ MP RN ++WN+
Sbjct: 172 DGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNA 231

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ------ 193
           MI  YV+     EA RLF+E+     ER   D+    T+I     +  L+  ++      
Sbjct: 232 MISAYVQRCEIDEASRLFEEM----PER---DSVSWTTMINGYVRIGKLDEARELLNEMP 284

Query: 194 ----------IHSHILVNGLD-----------FDSVLGSSLVNLYGKCGDFNSANQVLNM 232
                     I  +I  N +D           +D V  ++++  Y   G  N A  +   
Sbjct: 285 YRNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKR 344

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           M   D    + +IS YA  G+M+ A ++F+   +   V WNS+I+G++ N ++ +AL  F
Sbjct: 345 MVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSF 404

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             M   G   D  + A  LS+C+++  L+ G Q+H    K G ++ ++V +AL       
Sbjct: 405 ALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNAL------- 457

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                   IT+Y+ CGRI +A  +F  + +  +ISWNS+I G +
Sbjct: 458 ------------------------ITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYA 493

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            NG   EAL LF  M    +  D+ +   ++SAC +   ++ G ++F
Sbjct: 494 INGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLF 540



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 156/325 (48%), Gaps = 35/325 (10%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y++C    +A   FDE+   +   WNAMI G+   G   ++L L   M  K+  +W
Sbjct: 294 MISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTW 353

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +IS +A+ G++  A  +F +M  R+ ++WNS+I  ++ NG   +A++ F  +     E
Sbjct: 354 NTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGH---E 410

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + D    A  + +CA +AAL+ G Q+H  ++  G      L   +VN           
Sbjct: 411 GKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGY-----LNYLVVN----------- 454

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                          +ALI+ YA CG++ +A  VF+       + WNS+I GY  N    
Sbjct: 455 ---------------NALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGK 499

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-L 345
           EAL LF +M   G+  D  T   +LSAC+  G ++HG ++     KV  I+ +    A +
Sbjct: 500 EALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACM 559

Query: 346 LDTYSKRGMPSDACKLFSELKVYDT 370
           +D   + G   +A ++   +KV  T
Sbjct: 560 VDLLGRVGRLDEAFEIVRGMKVKAT 584



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 43/243 (17%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           L K ++N  +   N ++  Y + G    A+ +F+EM  R+  SWN++I GFM  G    +
Sbjct: 341 LSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDA 400

Query: 92  LQLFNVM------PQKNDFSW---------------------------------NMLISG 112
           L+ F +M      P +  F+                                  N LI+ 
Sbjct: 401 LKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITM 460

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK G +  A  +FN +   + I+WNS+I  Y  NG+ +EA++LF+E+ S   E +  D 
Sbjct: 461 YAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMAS---EGMAPDE 517

Query: 173 FILATVIGACADLAALEYGKQIHSHI-LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
                ++ AC     +++G ++   +  V  ++  +   + +V+L G+ G  + A +++ 
Sbjct: 518 VTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVR 577

Query: 232 MMK 234
            MK
Sbjct: 578 GMK 580



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 29/243 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L SC T  ++ VG QLH   +K G LN  L + N L+ MY +CG   +A L+F+ +   +
Sbjct: 423 LSSCATIAALQVGNQLHQVVVKGGYLN-YLVVNNALITMYAKCGRILEAGLVFNGICHAD 481

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             SWN++I G+   G+ +++L+LF  M  +    ++ ++  ++S    AG +     LF 
Sbjct: 482 VISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFK 541

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +  AI      +  M+    R G   EA  + + +      +++  A +   ++GAC
Sbjct: 542 CMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGM------KVKATAGVWGALLGAC 595

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMM------ 233
                LE G+ + +H L    +F+    S+ V   N++ +   +N   +V  +M      
Sbjct: 596 RAHGNLELGR-LAAHKLS---EFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTV 651

Query: 234 KEP 236
           KEP
Sbjct: 652 KEP 654


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 199/379 (52%), Gaps = 3/379 (0%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I   AK G + +AR LF++MP ++ +AWN+M+  Y + G  ++A+ LF  +    +   +
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMR---IANSR 68

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D F     + ACA L  L  G +IH+ ++V+G      +G+SL+++YGKC    SA +V
Sbjct: 69  PDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRV 128

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M   ++    +L+  Y + G  + AR VFD       + WN MISGY    +    L
Sbjct: 129 FEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCL 188

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF KMR + +  D  T +++++A   L    +G  +HG   K G +  V V++++L  Y
Sbjct: 189 GLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSFY 248

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           SK G   D  K+F  + +   +  N MI  +   G   +A  +F+  P K+++SW SMI 
Sbjct: 249 SKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMIT 308

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G ++NG   +AL  F  M +  ++ D F+  +V+ AC+++++L  G+ +   +   G  +
Sbjct: 309 GYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHA 368

Query: 470 DQIISTSLVDFYCKCGFIK 488
              +   LV+ Y KCG I+
Sbjct: 369 YVDVGNGLVNMYAKCGDIQ 387



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 217/487 (44%), Gaps = 72/487 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +  G ++H   +  G   S+LP+ N L+ MY +C + T A  +F+EM    
Sbjct: 78  LSACAGLGELRRGMKIHAQVVVSGC-QSSLPVGNSLIDMYGKCLSATSARRVFEEM---- 132

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                                   ++M   N+ SW  L+  +  +G    AR +F+ MP+
Sbjct: 133 ------------------------SIM---NEVSWCSLLFAYTSSGLFDVARVVFDGMPK 165

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +  IAWN MI  Y + G     + LFK++  D    LQ D +  + ++ A  +L    YG
Sbjct: 166 KVEIAWNIMISGYGQCGDVELCLGLFKKMRED---SLQPDQWTFSALVNALCELQEPSYG 222

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H  I+ +G      + +S+++ Y K G  +   +V   +        +A+I  +   
Sbjct: 223 YMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKI 282

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G  ++A  VF    + + V W SMI+GY  N    +AL  F KM  N +  D  T  +VL
Sbjct: 283 GDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVL 342

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            ACSSL  L HGK +HG     G    V V + L++ Y+K                    
Sbjct: 343 HACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAK-------------------- 382

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      CG I+ +   F+ +  K L+SWN+M+ GL  +G   +AL+L+  M    
Sbjct: 383 -----------CGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASG 431

Query: 432 LRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIK-- 488
           ++ DK +   ++  C++   +E G+ +F + V++ GL  +      +VD   + G++   
Sbjct: 432 MKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQA 491

Query: 489 ---MDEY 492
              +DEY
Sbjct: 492 RELVDEY 498



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++  ++  GK +H   +  G  ++ + + N L+ MY +CG+   +   F E+  +
Sbjct: 341 VLHACSSLATLGHGKMIHGSIIHYG-FHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGK 399

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTART 124
           +  SWNAM+ G    GH  ++L+L+  M      P K  F    L+   + +G ++  + 
Sbjct: 400 DLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFI--GLLMTCSHSGLIEKGQA 457

Query: 125 LFNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           LF  M     ++  +     M+    R G+  +A    +EL  +     + +  +   ++
Sbjct: 458 LFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQA----RELVDEYSRTGRAETSLPEALL 513

Query: 180 GACADLAALEYGKQIHSHILV--NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           GAC   + +  G  +  ++ V     +   VL   L NLY   G +  A  V   M +
Sbjct: 514 GACFAHSEVRMGANLGEYLKVFEPQKEMSYVL---LSNLYCVSGQWKEAEMVRKTMTD 568


>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Cucumis sativus]
          Length = 1096

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 151/493 (30%), Positives = 246/493 (49%), Gaps = 37/493 (7%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D R+ Y A  L      H  H G   HL  +K G    T+ ++N+L+  Y + G   DA 
Sbjct: 409 DARLVYTAGRLVFHEMKHLKH-GLLCHLQGIKSG-FTPTIFMSNQLITFYAKHGLLNDAQ 466

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            LFDE                               MP++N FSWN +I+ + K+  L+ 
Sbjct: 467 KLFDE-------------------------------MPERNVFSWNAIIAAYVKSQNLRQ 495

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVR-NGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           AR LF+    ++ + +NSM+  Y R +G+  +A+  F E+ +   + ++ D F L T++ 
Sbjct: 496 ARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQT-APDMIRIDEFTLITMLN 554

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP-DDF 239
             A L  + YGKQ+HS +L    D      SSL+++Y KCG F  A +V     E  D  
Sbjct: 555 LTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSV 614

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRN 298
             +A+++     G+++ A  +F +  + + V+ WN+MISG++ N  + E+L LF +M   
Sbjct: 615 SRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADE 674

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  +  T ASVLSACS+L  L+ GK+VH +  K  +I +  + S L+D Y K      A
Sbjct: 675 KVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYA 734

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
             + SEL++ +   + +MI  YSS G + +A+ +F ++  K+ + W ++  G  +     
Sbjct: 735 ESVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCE 794

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
              +L     K     D   L S+I ACA  ++L  G+Q+ + +   G+  D  +++SLV
Sbjct: 795 AVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLV 854

Query: 479 DFYCKCGFIKMDE 491
           D Y KCG I   E
Sbjct: 855 DMYSKCGSIIYAE 867



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 214/440 (48%), Gaps = 66/440 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GKQLH  F+ K   + T+  A+ L+ MY +CG        F E  R           
Sbjct: 562 ISYGKQLH-SFMLKTANDLTVFAASSLIDMYSKCG-------FFKEACRV---------- 603

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF-NDMPRRNAIAWNS 139
            +   G    S+            S N +++   + GE+  A  LF  ++ + + +AWN+
Sbjct: 604 -YYGCGEVVDSV------------SRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNT 650

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           MI  +V+NG+  E+++LF  +     E++  +    A+V+ AC++L +L+ GK++H+++L
Sbjct: 651 MISGFVQNGYEEESLKLFVRMAD---EKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVL 707

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
            N L  +  + S LV++Y KC +   A  V + ++  + + ++++I GY++ G M +AR+
Sbjct: 708 KNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGNMAEARK 767

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FD   + +SV+W ++  GY+   +      L  + R+   + D   L S++ AC+    
Sbjct: 768 LFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAA 827

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  GKQ+H +  + G+  D  + S+L+D YSK G    A ++F E+   D+I+ N MI  
Sbjct: 828 LVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAG 887

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+  G                   W +            EA+ LF  M K   + D  + 
Sbjct: 888 YAHHG-------------------WEN------------EAVQLFKEMVKHGFKPDAITF 916

Query: 440 ASVISACANISSLELGEQVF 459
            +++SAC +   +ELGE  F
Sbjct: 917 VALLSACRHGGLVELGEHFF 936



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 149/318 (46%), Gaps = 66/318 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+   S+ +GK++H + LK  ++ +   I + L+ +Y +C N   A  +  E+
Sbjct: 683 FASVLSACSNLRSLKLGKEVHAYVLKNRLIANPF-ICSGLVDVYCKCNNMRYAESVNSEL 741

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             +N +S  +MI                                G++  G +  AR LF+
Sbjct: 742 RMQNVYSITSMI-------------------------------VGYSSQGNMAEARKLFD 770

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  +N++ W ++   YV+    ++   +F+ L+    E    D  IL ++IGACA  AA
Sbjct: 771 SLDEKNSVVWTALFFGYVK---LQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAA 827

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GKQIHS++L  G+  D+ L SSLV++Y K                            
Sbjct: 828 LVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSK---------------------------- 859

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              CG +  A R+F   TD  S+++N MI+GY  +  + EA+ LF +M ++G   DA T 
Sbjct: 860 ---CGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITF 916

Query: 308 ASVLSACSSLGFLEHGKQ 325
            ++LSAC   G +E G+ 
Sbjct: 917 VALLSACRHGGLVELGEH 934


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 232/487 (47%), Gaps = 74/487 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL+S     ++   +  H   LK  +   T  + N L+  Y R G   DA  +FDE+
Sbjct: 23  LADLLRSAP---NLSGARAAHARILKSPVAGETF-LLNTLVSTYARLGRLRDARRVFDEI 78

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P RN FS+NA++  + +LG  +++  LF  +P  +  S+N +++  A+ G          
Sbjct: 79  PLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGR--------- 129

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                               G A +A+R    +++D       +A+  A+ + ACA    
Sbjct: 130 --------------------GHAADALRFLAAMHAD---DFVLNAYSFASALSACAAEKD 166

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
              G+Q+H  +  +    D  + S+LV++Y KC             + P+D         
Sbjct: 167 SRTGEQVHGLVARSPHADDVHIRSALVDMYAKC-------------ERPED--------- 204

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                    ARRVFD   + + V WNS+I+ Y  N    EAL+LF +M   G   D  TL
Sbjct: 205 ---------ARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTL 255

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +SV+SAC+ L     G+QVH H  K   + DD+++ +AL+D Y+K G   +A  +F  + 
Sbjct: 256 SSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
               +   +++T Y+    +EDA+ +F  M  K++I+WN +I   +QNG   EA+ LF  
Sbjct: 316 SRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQ 375

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI------IGLDSDQIISTSLVDF 480
           + +  +    ++  +V++AC NI+ L+LG+Q    V         G +SD  +  SLVD 
Sbjct: 376 LKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDM 435

Query: 481 YCKCGFI 487
           Y K G I
Sbjct: 436 YLKTGSI 442



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 227/497 (45%), Gaps = 85/497 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK--LGHKEKSLQLFNVMPQKN 102
           N LL  Y R G P +A  LF+ +P  +  S+NA++    +   GH   +L+    M   +
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAM-HAD 145

Query: 103 DFSWNM----------------------------------------LISGFAKAGELKTA 122
           DF  N                                         L+  +AK    + A
Sbjct: 146 DFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDA 205

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R +F+ MP RN ++WNS+I CY +NG   EA+ LF E+   +      D   L++V+ AC
Sbjct: 206 RRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEM---MAAGFSPDEVTLSSVMSAC 262

Query: 183 ADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           A LAA   G+Q+H+H++  + L  D VL ++LV++Y KCG    A  + + M        
Sbjct: 263 AGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSE 322

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +++++GYA    + DA+ VF +  + + + WN +I+ Y  N E+ EA+ LF +++R+ + 
Sbjct: 323 TSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIW 382

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACK------VGVIDDVIVASALLDTYSKRGMP 355
               T  +VL+AC ++  L+ G+Q H H  K       G   DV V ++L+D Y K G  
Sbjct: 383 PTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSI 442

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
            D  K+F  +   D +  N MI  Y+  GR +DA H+F  M              L  N 
Sbjct: 443 DDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM--------------LCSNE 488

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIIS 474
           +P                 D  ++  V+SAC +   ++ G + F  +T   G+   +   
Sbjct: 489 NP-----------------DSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHY 531

Query: 475 TSLVDFYCKCGFIKMDE 491
           T +VD   + G +K  E
Sbjct: 532 TCMVDLLGRAGHLKEAE 548



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 170/378 (44%), Gaps = 73/378 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C    +   G+Q+H H +K   L   + + N L+ MY +CG   +A  +FD M
Sbjct: 255 LSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSM 314

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  S  +++ G+ K  + E +  +F+ M +KN  +WN+LI+ +A+            
Sbjct: 315 PSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ------------ 362

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                              NG   EA+RLF +L  D +       +    V+ AC ++A 
Sbjct: 363 -------------------NGEEEEAIRLFVQLKRDSIWPTH---YTYGNVLNACGNIAD 400

Query: 188 LEYGKQIHSHILVNGLDF------DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           L+ G+Q H H+L  G  F      D  +G+SLV++Y K G  +   +V   M   D+   
Sbjct: 401 LQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSW 460

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A+I GYA  G+  DA  +F+R                + +NE+                
Sbjct: 461 NAMIVGYAQNGRAKDALHLFERM---------------LCSNENP--------------- 490

Query: 302 EDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
            D+ T+  VLSAC   G ++ G++  H      G+       + ++D   + G   +A +
Sbjct: 491 -DSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEE 549

Query: 361 LFSELKVY-DTILLNTMI 377
           L +++ +  D++L  +++
Sbjct: 550 LINDMPMEPDSVLWASLL 567


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  214 bits (546), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 241/520 (46%), Gaps = 105/520 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C    ++ +G+Q+H   +K   L++ + +   L+ +Y + G   +A+L+F  +
Sbjct: 123 LASVLRACTQSKAVSLGEQVHGIAVKLD-LDANVYVGTALINLYAKLGCMDEAMLVFHAL 181

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
           P R   +WN +I G+ ++G    +L+LF+ M                             
Sbjct: 182 PVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGR 241

Query: 100 QKNDFSW-----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           Q + +++           N+LI  + K   L  AR LF+ M  RN ++W +MI  Y++N 
Sbjct: 242 QIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNS 301

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+ +F  +        Q D F   +++ +C  LAA+  G+QIH+H++   L     
Sbjct: 302 FNAEAITMFWNMTQ---AGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADL----- 353

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                     E D++  +ALI  YA C  + +AR VFD   +  
Sbjct: 354 --------------------------EADEYVKNALIDMYAKCEHLTEARAVFDALAEDD 387

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ +N+MI GY  N +  EA+ +F +MR   +     T  S+L   SS   +E  KQ+HG
Sbjct: 388 AISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHG 447

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   D+  ASAL+D YSK                               C  + D
Sbjct: 448 LIIKSGTSLDLYAASALIDVYSK-------------------------------CSLVND 476

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK +F  +  K ++ WNSMI G +QN    EA+ LF  +    +  ++F+  ++++  + 
Sbjct: 477 AKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVAST 536

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++S+  G+Q  A +   G+D+D  +S +L+D Y KCGFIK
Sbjct: 537 LASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIK 576



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/529 (25%), Positives = 223/529 (42%), Gaps = 111/529 (20%)

Query: 3   TRIDYLARLLQSC---NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           T I  LAR+L SC          +   +H      G L+  L + N LL+ Y   G   D
Sbjct: 13  THIRSLARVLLSCLPTGGDRLRRLNPAIHARATVAGRLDD-LFLTNLLLRGYSNLGRLRD 71

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------ 101
           A  LFD MP RN  SW ++I  + + G  + ++ LF V  QK                  
Sbjct: 72  ARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLF-VAFQKASCEVPNEFLLASVLRAC 130

Query: 102 -----------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
                                  N +    LI+ +AK G +  A  +F+ +P R  + WN
Sbjct: 131 TQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWN 190

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           ++I  Y + G    A+ LF  +    +E ++ D F+LA+ + AC+ L  LE G+QIH + 
Sbjct: 191 TVITGYAQIGCGGVALELFDRMG---IEGVRPDRFVLASAVSACSALGFLEGGRQIHGYA 247

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
             +  + D+ + + L++LY K                               C +++ AR
Sbjct: 248 YRSATETDTSVINVLIDLYCK-------------------------------CSRLSAAR 276

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           ++FD     + V W +MISGY+ N+ + EA+ +F  M + G   D     S+L++C SL 
Sbjct: 277 KLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLA 336

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            +  G+Q+H H  K  +  D  V +AL+D Y+K    ++A  +F  L   D I  N MI 
Sbjct: 337 AIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIE 396

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
                                          G S+N    EA+++F  M    LR    +
Sbjct: 397 -------------------------------GYSKNRDLAEAVNIFQRMRFFSLRPSLLT 425

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             S++   ++  ++EL +Q+   +   G   D   +++L+D Y KC  +
Sbjct: 426 FVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLV 474



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 219/503 (43%), Gaps = 83/503 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  + +C+    +  G+Q+H +  +      T  + N L+ +Y +C   + A  LFD M
Sbjct: 224 LASAVSACSALGFLEGGRQIHGYAYRSATETDT-SVINVLIDLYCKCSRLSAARKLFDCM 282

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
             RN  SW  MI G+M+     +++ +F  M Q                           
Sbjct: 283 EYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGR 342

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        +++  N LI  +AK   L  AR +F+ +   +AI++N+MI  Y +N 
Sbjct: 343 QIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNR 402

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EAV +F+ +       L+       +++G  +   A+E  KQIH  I+ +G   D  
Sbjct: 403 DLAEAVNIFQRMR---FFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLD-- 457

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                  LY                        SALI  Y+ C  +NDA+ VF+      
Sbjct: 458 -------LYAA----------------------SALIDVYSKCSLVNDAKTVFNMLHYKD 488

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+WNSMI G+  N +  EA+ LF+++  +G+  +  T  ++++  S+L  + HG+Q H 
Sbjct: 489 MVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHA 548

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K GV +D  V++AL+D Y+K G   +   LF      D I  N+MIT Y+  G  E+
Sbjct: 549 WIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEE 608

Query: 389 AKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLAS 441
           A  +FR M      PN   +++  ++   +  G   E L+ F +M +  D+       AS
Sbjct: 609 ALQVFRLMGEAEVEPN--YVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYAS 666

Query: 442 VISACANISSLELGEQVFARVTI 464
           V++       L   ++   R+ I
Sbjct: 667 VVNLFGRSGKLHAAKEFIERMPI 689



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D  L N ++  YS+ GR+ DA+H+F  MP+++L+SW S+I   +Q+G    A+ LF    
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 429 KLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           K    + ++F LASV+ AC    ++ LGEQV      + LD++  + T+L++ Y K G  
Sbjct: 112 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGC- 170

Query: 488 KMDEYYLM 495
            MDE  L+
Sbjct: 171 -MDEAMLV 177



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 65/364 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL   ++  +I + KQ+H   +K G  +  L  A+ L+ +Y +C    DA  +F+ +  +
Sbjct: 429 LLGVSSSQLAIELSKQIHGLIIKSGT-SLDLYAASALIDVYSKCSLVNDAKTVFNMLHYK 487

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-------------------- 104
           +   WN+MI G  +    E++++LFN +      P +  F                    
Sbjct: 488 DMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFH 547

Query: 105 SW-------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           +W             N LI  +AK G +K  R LF      + I WNSMI  Y ++G A 
Sbjct: 548 AWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAE 607

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG- 210
           EA+++F+ +    VE    +      V+ ACA    +  G   H + + +  D +  +  
Sbjct: 608 EALQVFRLMGEAEVEP---NYVTFVGVLSACAHAGFVGEGLN-HFNSMKSNYDIEPGIEH 663

Query: 211 -SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS-----GYANCGKMNDARRVFDR 263
            +S+VNL+G+ G  ++A + +  M  +P      +L+S     G A  G+      +   
Sbjct: 664 YASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLAD 723

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            TD+   +  S I  Y S     +   L  +M  +G +++        + CS   ++E  
Sbjct: 724 PTDSGPYVLLSNI--YASKGLWADVHNLRQQMDSSGTVKE--------TGCS---WIEVT 770

Query: 324 KQVH 327
           K+VH
Sbjct: 771 KEVH 774


>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 527

 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 149/520 (28%), Positives = 238/520 (45%), Gaps = 111/520 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C  H  +   KQ+H   LK G ++    +AN+L+++Y+RCG   DA  +FD++ ++
Sbjct: 5   VLQRCFKHKDLTSVKQVHDCILKSG-MDQNPYVANKLMRVYIRCGKVQDARHVFDKLVKK 63

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSWN---- 107
           N F+W  MI G+ + G    +++++N M Q+                       W     
Sbjct: 64  NVFNWTTMIGGYAEHGRPADAIEVYNQMRQEGGRPNEVTYLSILKACACPVGLKWGKEIH 123

Query: 108 ----------------MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L++ +AK+G +K AR +F++M  RN I WN MI    ++GF +
Sbjct: 124 AHISHGGFRSDVPVQTALVNMYAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQHGFGQ 183

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVI--GACADLAALEYGKQIHSHILVNGLDFDSVL 209
           EA  LF ++     E    D+    +++   AC+   AL + K++H H +  G D D  +
Sbjct: 184 EAFSLFLQMQE---EGFVPDSTTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDMRV 240

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN--CGKMNDARRVFDRTTDT 267
            ++LV++Y K G  + A  V   M + D    SA+I G A   CG               
Sbjct: 241 CNALVHVYSKSGSVDDARLVFEGMLDRDVISWSAMIGGLAQNGCGH-------------- 286

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                              EA  LF KM+R GV+ + +T  S+L+A +S G LE  KQVH
Sbjct: 287 -------------------EAFSLFLKMQREGVIPNVTTYVSILTASASAGALEWVKQVH 327

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            HA K G+  D  V +AL+  Y+K G   DA  +F ++ V                    
Sbjct: 328 NHARKAGLGSDFRVCNALVHMYAKSGSIDDARLVFDQMSV-------------------- 367

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                      +++ +WN+MI GL+Q+G   EA  LF  M +  +  D  +  S+++A A
Sbjct: 368 -----------RNVFTWNAMIGGLAQHGCGQEAFSLFLRMRREGVVPDAITYMSILNASA 416

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  +L   ++V  +    GLDSD  +  +LV  YCK G I
Sbjct: 417 STGALGWVKEVHRQAVQAGLDSDVRVGNALVHMYCKTGSI 456



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 139/496 (28%), Positives = 219/496 (44%), Gaps = 109/496 (21%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            + YL+ +L++C     +  GK++H H +  G   S +P+   L+ MY + G+  DA L+
Sbjct: 100 EVTYLS-ILKACACPVGLKWGKEIHAH-ISHGGFRSDVPVQTALVNMYAKSGSIKDARLV 157

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--------------------- 102
           FDEM  RN  +WN MI G  + G  +++  LF  M ++                      
Sbjct: 158 FDEMAERNVITWNVMIGGLAQHGFGQEAFSLFLQMQEEGFVPDSTTYLSILTATACSSAG 217

Query: 103 DFSW--------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
              W                    N L+  ++K+G +  AR +F  M  R+ I+W++MI 
Sbjct: 218 ALGWVKEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGMLDRDVISWSAMIG 277

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
              +NG   EA  LF ++     E +  +     +++ A A   ALE+ KQ+H+H    G
Sbjct: 278 GLAQNGCGHEAFSLFLKMQR---EGVIPNVTTYVSILTASASAGALEWVKQVHNHARKAG 334

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L      GS          DF   N +++M               YA  G ++DAR VFD
Sbjct: 335 L------GS----------DFRVCNALVHM---------------YAKSGSIDDARLVFD 363

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           + +  +   WN+MI G   +    EA  LF +MRR GV+ DA T  S+L+A +S G L  
Sbjct: 364 QMSVRNVFTWNAMIGGLAQHGCGQEAFSLFLRMRREGVVPDAITYMSILNASASTGALGW 423

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
            K+VH  A + G+  DV V +AL+  Y K G  SD                         
Sbjct: 424 VKEVHRQAVQAGLDSDVRVGNALVHMYCKTGSISD------------------------- 458

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                 A+ +F  M  + +I+W +MI GL+QN    EA  LF  M +        + AS+
Sbjct: 459 ------ARLMFDGMVERDVITWTAMISGLAQNECGQEAFSLFLQMQREGFIPVATTYASI 512

Query: 443 ISACANISSLELGEQV 458
           ++ C + + L + E++
Sbjct: 513 LNVCTS-TGLAMVEEI 527



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 72/115 (62%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N ++ VY  CG+++DA+H+F  +  K++ +W +MI G +++G P +A++++  M +   R
Sbjct: 38  NKLMRVYIRCGKVQDARHVFDKLVKKNVFNWTTMIGGYAEHGRPADAIEVYNQMRQEGGR 97

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++ +  S++ ACA    L+ G+++ A ++  G  SD  + T+LV+ Y K G IK
Sbjct: 98  PNEVTYLSILKACACPVGLKWGKEIHAHISHGGFRSDVPVQTALVNMYAKSGSIK 152


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  214 bits (546), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 138/469 (29%), Positives = 222/469 (47%), Gaps = 104/469 (22%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
            +HLH  K    N T  I NRLL +Y + G  + A  LFDE                   
Sbjct: 47  HMHLHLFKP---NDTF-IHNRLLNLYAKSGEISHARKLFDE------------------- 83

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                       M Q+++FSWN ++S +AK+G ++  R +F++MP R+++++N++I  + 
Sbjct: 84  ------------MTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFA 131

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
            NG    A+ +F  +     E L+   +   +V+ AC  L  L  GKQIH  I++  L  
Sbjct: 132 GNGRGGPALGVFLRMQK---EGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGG 188

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMK------------------------------- 234
           +  + ++L +LY +CG+ + A ++ + M                                
Sbjct: 189 NVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQ 248

Query: 235 ----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
               +PD    S+++  Y   G +++AR+VF    +   V W  MI G   N ++ +ALL
Sbjct: 249 VSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALL 308

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF +M       D  T++SV+S+C+ L  L HG+ VHG A  +GV DD++V+SAL+D Y 
Sbjct: 309 LFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYC 368

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K                               CG   DA  IF TM  ++++SWNSMI G
Sbjct: 369 K-------------------------------CGVTRDAWTIFSTMQTRNVVSWNSMIGG 397

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            + NG  +EAL L+ NM + +L+ D  +   V+SAC +   +E G++ F
Sbjct: 398 YALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYF 446



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 178/343 (51%), Gaps = 36/343 (10%)

Query: 182 CADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           C   + ++  K++ SH+ ++     D+ + + L+NLY K G+ + A ++ + M + D+F 
Sbjct: 32  CFRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFS 91

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +A++S YA  G + D R +FD      SV +N++ISG+  N     AL +F +M++ G+
Sbjct: 92  WNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGL 151

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
                T  SVL+AC+ L  L  GKQ+HG      +  +V V +AL D Y++ G    A +
Sbjct: 152 KPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARR 211

Query: 361 LFSELKVYDTILLNTMIT-----------------------------------VYSSCGR 385
           LF  + + + +  N MI+                                    Y   G 
Sbjct: 212 LFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGY 271

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           I++A+ +F  +  K  + W  MIVG +QNG   +AL LF  M   + R D ++++SV+S+
Sbjct: 272 IDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSS 331

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           CA ++SL  G+ V  +  ++G++ D ++S++LVD YCKCG  +
Sbjct: 332 CAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTR 374



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 44/259 (16%)

Query: 29  LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
            H ++   L      A+ +L  Y++ G   +A  +F E+  ++   W  MI G  + G +
Sbjct: 244 FHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKE 303

Query: 89  EKSLQLFNVMPQKNDFSWNMLISG------------------------------------ 112
           E +L LF+ M  +N       IS                                     
Sbjct: 304 EDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSAL 363

Query: 113 ---FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
              + K G  + A T+F+ M  RN ++WNSMI  Y  NG   EA+ L++ +   L E L+
Sbjct: 364 VDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENM---LEENLK 420

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
            D+     V+ AC     +E GK+    +   +GL+      + +VNL+G+ G  + A  
Sbjct: 421 PDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVD 480

Query: 229 VL-NMMKEPDDFCLSALIS 246
           ++ +M +EP+    + ++S
Sbjct: 481 LISSMSQEPNSLIWTTVLS 499


>gi|302820510|ref|XP_002991922.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
 gi|300140308|gb|EFJ07033.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
          Length = 690

 Score =  214 bits (545), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 145/527 (27%), Positives = 243/527 (46%), Gaps = 84/527 (15%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D   D  A LL+ C    S+  G+ +H H L  G    T  + N L++MY +CG+  DA
Sbjct: 32  LDVDNDVYATLLRECERSKSLSQGRYIHAHILASGKSGKTF-LGNLLVRMYGKCGSIADA 90

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------------------- 98
              FD++ R+N FSW  M+  F   GH  +++Q+++ M                      
Sbjct: 91  KEAFDQIHRKNVFSWTIMLGAFADCGHHRQAIQIYHAMVLEGVRPDCVAFASIAGICSEL 150

Query: 99  -----------------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                             + +    N L++ ++K G +  AR +F  +  +N I+WN+MI
Sbjct: 151 QCFQAGKAIHDCVLEQGAESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNPISWNAMI 210

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             + + G    A+ L+       VE    D   L     ACA L  L+ G++IH+  +  
Sbjct: 211 AAFAQCGDFASALELY-------VEHPVPDKITLILAAKACASLGDLDRGREIHARAVEL 263

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL+ D ++ +SL+ +YGKC                  +C+              DA+R+F
Sbjct: 264 GLESDLLVANSLIGMYGKC------------------YCV-------------GDAKRLF 292

Query: 262 D--RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           D     +   + WNS+I+ YI     ++AL LF +  R  V  +  T  +++ ACS+L  
Sbjct: 293 DGLEAKNRDVISWNSIIAAYILAGMSSQALELFRE--RMDVEPNRITFIALIDACSTLCD 350

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           LE G+ +H          +V V + LL  Y+K G   +A  +F  ++   T L  +++ +
Sbjct: 351 LEQGRWIHERIRSSEFAREVAVENGLLLMYAKCGSIEEAMAIFESMEGRRT-LATSLVIM 409

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG-SPIEALDLFCNMNKLDLRMDKFS 438
           Y   G + DA  +F  M ++ +++W +MI   SQ   + +EA+D FC M+    + D+ +
Sbjct: 410 YCKFGCVADAMAVFSGMRSRDVVAWTAMITAFSQQEHTSMEAVDYFCQMDLDGSKPDEVT 469

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ASV+ + A +  L  G  V   V   G  SD ++ T+L+D Y KCG
Sbjct: 470 FASVLGSIARLGLLSRGRSVHCDVLACGFQSDVVVGTALLDMYSKCG 516



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 203/474 (42%), Gaps = 79/474 (16%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C+       GK +H   L++G   S + +AN L+ MY +CG    A  +F  +  +N  S
Sbjct: 147 CSELQCFQAGKAIHDCVLEQGA-ESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNPIS 205

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW---------------------------- 106
           WNAMI  F + G    +L+L+   P  +  +                             
Sbjct: 206 WNAMIAAFAQCGDFASALELYVEHPVPDKITLILAAKACASLGDLDRGREIHARAVELGL 265

Query: 107 -------NMLISGFAKAGELKTARTLFNDMPRRN--AIAWNSMIHCYVRNGFAREAVRLF 157
                  N LI  + K   +  A+ LF+ +  +N   I+WNS+I  Y+  G + +A+ LF
Sbjct: 266 ESDLLVANSLIGMYGKCYCVGDAKRLFDGLEAKNRDVISWNSIIAAYILAGMSSQALELF 325

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
           +E       R+    FI   +I AC+ L  LE G+ IH  I  +    +  + + L+ +Y
Sbjct: 326 RERMDVEPNRI---TFI--ALIDACSTLCDLEQGRWIHERIRSSEFAREVAVENGLLLMY 380

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            KCG    A  +   M+       S +I  Y   G + DA  VF        V W +MI+
Sbjct: 381 AKCGSIEEAMAIFESMEGRRTLATSLVIM-YCKFGCVADAMAVFSGMRSRDVVAWTAMIT 439

Query: 278 GYISNNEDT--EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
            + S  E T  EA+  F +M  +G   D  T ASVL + + LG L  G+ VH      G 
Sbjct: 440 AF-SQQEHTSMEAVDYFCQMDLDGSKPDEVTFASVLGSIARLGLLSRGRSVHCDVLACGF 498

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             DV+V +ALLD YSK                               CG + DAK  F  
Sbjct: 499 QSDVVVGTALLDMYSK-------------------------------CGSLIDAKRAFDD 527

Query: 396 M-PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +  +++L+SWN+MI  ++++G      +L+  M    +R +  +  +++  C++
Sbjct: 528 LGGSRNLVSWNAMIAAMAKHGDWSSGFELYRAMILEGVRPNDVTFTNMLFLCSH 581



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 178/387 (45%), Gaps = 73/387 (18%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N+L+  + K G +  A+  F+ + R+N  +W  M+  +   G  R+A++++  +   
Sbjct: 72  FLGNLLVRMYGKCGSIADAKEAFDQIHRKNVFSWTIMLGAFADCGHHRQAIQIYHAM--- 128

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           ++E ++ D    A++ G C++L   + GK IH  +L  G + D ++ ++LV +Y K    
Sbjct: 129 VLEGVRPDCVAFASIAGICSELQCFQAGKAIHDCVLEQGAESDVIVANNLVTMYSK---- 184

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      CG+++ AR VF R  + + + WN+MI+ +    
Sbjct: 185 ---------------------------CGRIDGARCVFRRIKNKNPISWNAMIAAFAQCG 217

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +   AL L+ +      + D  TL     AC+SLG L+ G+++H  A ++G+  D++VA 
Sbjct: 218 DFASALELYVEHP----VPDKITLILAAKACASLGDLDRGREIHARAVELGLESDLLVA- 272

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSL 401
                                         N++I +Y  C  + DAK +F  +   N+ +
Sbjct: 273 ------------------------------NSLIGMYGKCYCVGDAKRLFDGLEAKNRDV 302

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ISWNS+I      G   +AL+LF    ++D+  ++ +  ++I AC+ +  LE G  +  R
Sbjct: 303 ISWNSIIAAYILAGMSSQALELF--RERMDVEPNRITFIALIDACSTLCDLEQGRWIHER 360

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +       +  +   L+  Y KCG I+
Sbjct: 361 IRSSEFAREVAVENGLLLMYAKCGSIE 387



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 134/317 (42%), Gaps = 70/317 (22%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI ++A L+ +C+T   +  G+ +H   ++       + + N LL MY +CG+       
Sbjct: 335 RITFIA-LIDACSTLCDLEQGRWIH-ERIRSSEFAREVAVENGLLLMYAKCGSI------ 386

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
                                    E+++ +F  M  +   + +++I  + K G +  A 
Sbjct: 387 -------------------------EEAMAIFESMEGRRTLATSLVIM-YCKFGCVADAM 420

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGF-AREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            +F+ M  R+ +AW +MI  + +    + EAV  F +++ D  +    D    A+V+G+ 
Sbjct: 421 AVFSGMRSRDVVAWTAMITAFSQQEHTSMEAVDYFCQMDLDGSKP---DEVTFASVLGSI 477

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A L  L  G+ +H  +L  G   D V+G++L+++Y K                       
Sbjct: 478 ARLGLLSRGRSVHCDVLACGFQSDVVVGTALLDMYSK----------------------- 514

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                   CG + DA+R FD    + + V WN+MI+    + + +    L+  M   GV 
Sbjct: 515 --------CGSLIDAKRAFDDLGGSRNLVSWNAMIAAMAKHGDWSSGFELYRAMILEGVR 566

Query: 302 EDASTLASVLSACSSLG 318
            +  T  ++L  CS  G
Sbjct: 567 PNDVTFTNMLFLCSHGG 583



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 31/185 (16%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D    A++L  C     L  G+ +H H          I+AS                   
Sbjct: 35  DNDVYATLLRECERSKSLSQGRYIHAH----------ILASG------------------ 66

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
              K   T L N ++ +Y  CG I DAK  F  +  K++ SW  M+   +  G   +A+ 
Sbjct: 67  ---KSGKTFLGNLLVRMYGKCGSIADAKEAFDQIHRKNVFSWTIMLGAFADCGHHRQAIQ 123

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           ++  M    +R D  + AS+   C+ +   + G+ +   V   G +SD I++ +LV  Y 
Sbjct: 124 IYHAMVLEGVRPDCVAFASIAGICSELQCFQAGKAIHDCVLEQGAESDVIVANNLVTMYS 183

Query: 483 KCGFI 487
           KCG I
Sbjct: 184 KCGRI 188


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 144/520 (27%), Positives = 237/520 (45%), Gaps = 105/520 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C    +   G+Q+H    K G L++ + +   L+ +Y + G    A+ +FD +
Sbjct: 140 LASALRACAQSRAARFGEQVHGVAAKLG-LDANVFVGTALVNLYAKAGRIDAAMSVFDAL 198

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
           P RN  +W A+I G+ + G    +L+LF  M                             
Sbjct: 199 PARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGR 258

Query: 100 QKNDFSW-----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           Q + +++           N LI  + K   L  AR LF+ M  RN ++W +MI  Y++N 
Sbjct: 259 QIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNS 318

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ +F +L+       Q D F   +++ +C  LAA+  G+Q+H+H++   L     
Sbjct: 319 LDTEAMSMFWQLSQ---AGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADL----- 370

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                     E D++  +ALI  YA C  + +AR VF+   +  
Sbjct: 371 --------------------------ESDEYVKNALIDMYAKCEHLTEARAVFEALAEDD 404

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ +N+MI GY    + T A+ +F KMR   +     T  S+L   SS   LE  KQ+HG
Sbjct: 405 AISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHG 464

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   D+   SAL+D YSK  +                               ++D
Sbjct: 465 LIVKSGTSLDLYAGSALIDVYSKFSL-------------------------------VDD 493

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK +F  M N+ ++ WN+MI GL+QN    EA+ LF  +    L  ++F+  ++++  + 
Sbjct: 494 AKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVAST 553

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++S+  G+Q  A++   G DSD  IS +L+D Y KCGFI+
Sbjct: 554 LASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIE 593



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 6/143 (4%)

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           +R +P    +      + D  L N ++  YS  GR+ DA+ +F +MP+++L+SW S I  
Sbjct: 46  RRVLPPAHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISM 105

Query: 411 LSQNGSPIEALDLFCNMNKLDL------RMDKFSLASVISACANISSLELGEQVFARVTI 464
            +Q+G   +AL LF                ++F LAS + ACA   +   GEQV      
Sbjct: 106 YAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAK 165

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
           +GLD++  + T+LV+ Y K G I
Sbjct: 166 LGLDANVFVGTALVNLYAKAGRI 188



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 19/239 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+   +T  SI  G+Q H   +K G  +S   I+N L+ MY +CG   +  LLF+    +
Sbjct: 547 LVTVASTLASIFHGQQFHAQIIKAGA-DSDPHISNALIDMYAKCGFIEEGRLLFESTLGK 605

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +   WN+MI  + + GH E++L +F +M     + N  ++  ++S  A AG +      F
Sbjct: 606 DVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHF 665

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREA-VRLFKELNSDLVERLQCD--AFILATVIGACA 183
           N M  + A+   +  +  V N F R   +   KE     +ER+  +  A I  +++ AC 
Sbjct: 666 NSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKE----FIERMPIEPVATIWRSLLSACH 721

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM------KEP 236
               +E G+      L+     DS     + N+Y   G +  A ++   M      KEP
Sbjct: 722 LFGNVEIGRYATEMALLAD-PADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEP 779


>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
          Length = 394

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 204/382 (53%), Gaps = 50/382 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMPR 69
           LL  C    ++   KQ+H H L  GIL   +P +  +LL +Y++CG+  DA L FD M +
Sbjct: 17  LLHLCTKAKTLAEAKQVHAHMLLTGILR--IPSVETKLLNLYVKCGSLPDARLAFDNMTK 74

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSW------------------ 106
            + F WN MI G++K G   ++L+L++ M +      +++++                  
Sbjct: 75  GDVFPWNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKL 134

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N LI+ F K G ++ AR +F+ M  RN ++W +M+  Y + GF
Sbjct: 135 IYDEIISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGF 194

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           A EA+R+F E+     E ++ +   +A+V+ ACA L+ L+ GK+IH +I+  GLD   V+
Sbjct: 195 ADEALRMFYEMQG---EDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVV 251

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT---- 265
           G++L+++Y KCG   SA +V + M + D    +  I+GYA  G+ ++   +F +      
Sbjct: 252 GNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCAGL 311

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               + WN++I+ Y  N    + L LF +M+  GV  ++ T+ASVLSAC+++  L+ GK+
Sbjct: 312 KIDVITWNTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITIASVLSACAAVSALQEGKR 371

Query: 326 VHGHACKVGVIDDVIVASALLD 347
           +H    +     D+ V +AL+D
Sbjct: 372 IHDLVNRSECKSDICVGNALID 393



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 199/376 (52%), Gaps = 37/376 (9%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L++ + K G L  AR  F++M + +   WN MI  YV++G  REA+ L+ ++    V   
Sbjct: 52  LLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQK--VSST 109

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D +  ++V+ ACA LA+L  GK I+  I+  G + D ++ ++L+N++ KC        
Sbjct: 110 NPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKC-------- 161

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                  G + DARRVFD+  + + V W +M+SGY       EA
Sbjct: 162 -----------------------GSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEA 198

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L +F++M+   V  +  T+ASVL AC+ L  L+ GK++HG+  + G+   ++V +AL+D 
Sbjct: 199 LRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDM 258

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISW 404
           Y+K G    A K+F ++   D +  N  I  Y+  GR ++   +FR M    L    I+W
Sbjct: 259 YAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCAGLKIDVITW 318

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++I   +QNG   + L+LF  M    ++ +  ++ASV+SACA +S+L+ G+++   V  
Sbjct: 319 NTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITIASVLSACAAVSALQEGKRIHDLVNR 378

Query: 465 IGLDSDQIISTSLVDF 480
               SD  +  +L+D 
Sbjct: 379 SECKSDICVGNALIDM 394



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 147/307 (47%), Gaps = 63/307 (20%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C     L   KQ+H+H+L+ G+     + + L+NLY KC                     
Sbjct: 21  CTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKC--------------------- 59

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGV 300
                     G + DAR  FD  T      WN MI GY+ + E  EAL L+H+M++ +  
Sbjct: 60  ----------GSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVSST 109

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T +SVL+AC+ L  L  GK ++         D++I               S  C+
Sbjct: 110 NPDNYTYSSVLNACARLASLSEGKLIY---------DEII---------------SKGCE 145

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +       D I+ N +I ++  CG IEDA+ +F  M  ++L+SW +M+ G +Q G   EA
Sbjct: 146 M-------DVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEA 198

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L +F  M   D++ +  ++ASV+ ACA +S L+ G+++   +   GLD   ++  +L+D 
Sbjct: 199 LRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDM 258

Query: 481 YCKCGFI 487
           Y KCG I
Sbjct: 259 YAKCGSI 265



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 113/221 (51%), Gaps = 41/221 (18%)

Query: 2   DTRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D + +Y+  A +L +C     +  GK++H + +++G L+  + + N L+ MY +CG+   
Sbjct: 209 DVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRG-LDLGIVVGNALIDMYAKCGS--- 264

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
                                    +G  +K   +F+ M Q++  SWN+ I+G+A+ G  
Sbjct: 265 -------------------------IGSAQK---VFDKMLQRDVVSWNVAIAGYAQNGRF 296

Query: 120 KTARTLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                LF  M     + + I WN++I  Y +NG+  + + LF+++    +  ++ ++  +
Sbjct: 297 DECMELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQMQ---LRGVKPNSITI 353

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216
           A+V+ ACA ++AL+ GK+IH  +  +    D  +G++L+++
Sbjct: 354 ASVLSACAAVSALQEGKRIHDLVNRSECKSDICVGNALIDM 394



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 32/180 (17%)

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L  C+    L   KQVH H    G++                 +PS            +
Sbjct: 17  LLHLCTKAKTLAEAKQVHAHMLLTGILR----------------IPS-----------VE 49

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T LLN    +Y  CG + DA+  F  M    +  WN MI G  ++G   EAL+L+  M K
Sbjct: 50  TKLLN----LYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQK 105

Query: 430 LD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +     D ++ +SV++ACA ++SL  G+ ++  +   G + D I+  +L++ + KCG I+
Sbjct: 106 VSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIE 165


>gi|168032055|ref|XP_001768535.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680248|gb|EDQ66686.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 225/513 (43%), Gaps = 108/513 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     +  GK +H H  K   + +T  + N L+ MYM+CG+  DA  +FD M  R
Sbjct: 55  LLRRCTHMKDLAEGKYVHAHMAKSDFVPTTF-VLNALVNMYMKCGSLVDARQVFDRMVER 113

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------DFS------------------- 105
           + F++  M+ G+ KLG+ E + +++  M ++        F+                   
Sbjct: 114 DMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTILNVCSTLRSLEKGMKVH 173

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LI  +AK G LK A  +F +M  R+ + WN M+    RNG+  
Sbjct: 174 QDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFD 233

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA   FK +   L E  + D     +++ AC    +LE G  +HS I+  G + D  +G+
Sbjct: 234 EAFEFFKAM---LDEGQKPDKVTYISILNACT---SLEQGTLLHSVIMKAGFELDVRVGT 287

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LVN++ KC                               G + DA +VF +    + V 
Sbjct: 288 ALVNMFSKC-------------------------------GSVVDALKVFQKLPQRNVVS 316

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+IS Y    E   AL  + KM   G++ D     ++L+ C+ LG +E GK VHGH  
Sbjct: 317 WTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDIEKGKAVHGHIV 376

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G+  D+I  + L+D Y K G   DA +LF ++ V D                      
Sbjct: 377 QSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVRD---------------------- 414

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                    ++SW ++I G  Q+    EALD F +M    +  +  +   V+ ACA + S
Sbjct: 415 ---------VVSWTTLIEGWVQHRQYQEALDTFNDMQLEGVMPNTVTFLGVLKACAGMGS 465

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           L  G+++ AR+   GL  +  I  +L D Y KC
Sbjct: 466 LVDGKRIHARIVEAGLAENAHIRHALADMYAKC 498



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 187/427 (43%), Gaps = 75/427 (17%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           R C     + EG     H  KS    + +P    F  N L++ + K G L  AR +F+ M
Sbjct: 57  RRCTHMKDLAEGKYVHAHMAKS----DFVP--TTFVLNALVNMYMKCGSLVDARQVFDRM 110

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
             R+   +  M+  Y + G+  +A ++++++     ER+  D     T++  C+ L +LE
Sbjct: 111 VERDMFTYTMMLTGYAKLGYPEDAYKMYEQMQK---ERVPVDRITFTTILNVCSTLRSLE 167

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G ++H  ++  G+  D +LG++L+++Y                               A
Sbjct: 168 KGMKVHQDMVRGGIRPDIILGNTLIDMY-------------------------------A 196

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CG +  A RVF    +   V WN M+ G   N    EA   F  M   G   D  T  S
Sbjct: 197 KCGNLKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYIS 256

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L+AC+SL   E G  +H    K G   DV V +AL++ +SK                  
Sbjct: 257 ILNACTSL---EQGTLLHSVIMKAGFELDVRVGTALVNMFSK------------------ 295

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        CG + DA  +F+ +P ++++SW S+I   +Q G P  AL+ +  M  
Sbjct: 296 -------------CGSVVDALKVFQKLPQRNVVSWTSVISAYAQAGEPERALECYAKMLN 342

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             +  DK +  ++++ CA +  +E G+ V   +   G+ +D I    L+D Y KCG +K 
Sbjct: 343 EGMVADKRAYTTILNVCAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLK- 401

Query: 490 DEYYLMQ 496
           D Y L Q
Sbjct: 402 DAYRLFQ 408



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 120/256 (46%), Gaps = 47/256 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y++ +L +C    S+  G  LH   +K G     + +   L+ M+ +CG+  DAL +
Sbjct: 251 KVTYIS-ILNACT---SLEQGTLLHSVIMKAG-FELDVRVGTALVNMFSKCGSVVDALKV 305

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ-------------------LFNVMPQKNDF 104
           F ++P+RN  SW ++I  + + G  E++L+                   + NV     D 
Sbjct: 306 FQKLPQRNVVSWTSVISAYAQAGEPERALECYAKMLNEGMVADKRAYTTILNVCAMLGDI 365

Query: 105 --------------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                               + N LI  + K G LK A  LF DM  R+ ++W ++I  +
Sbjct: 366 EKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMNVRDVVSWTTLIEGW 425

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V++   +EA+  F ++    +E +  +      V+ ACA + +L  GK+IH+ I+  GL 
Sbjct: 426 VQHRQYQEALDTFNDMQ---LEGVMPNTVTFLGVLKACAGMGSLVDGKRIHARIVEAGLA 482

Query: 205 FDSVLGSSLVNLYGKC 220
            ++ +  +L ++Y KC
Sbjct: 483 ENAHIRHALADMYAKC 498



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 73/266 (27%)

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL------ 345
            H + + G+   +     +L  C+ +  L  GK VH H  K   +    V +AL      
Sbjct: 37  LHILEQRGIEPSSYAYVCLLRRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMK 96

Query: 346 -------------------------LDTYSKRGMPSDACKLFSEL--------KVYDTIL 372
                                    L  Y+K G P DA K++ ++        ++  T +
Sbjct: 97  CGSLVDARQVFDRMVERDMFTYTMMLTGYAKLGYPEDAYKMYEQMQKERVPVDRITFTTI 156

Query: 373 LN-------------------------------TMITVYSSCGRIEDAKHIFRTMPNKSL 401
           LN                               T+I +Y+ CG ++ A  +F+ M N+ +
Sbjct: 157 LNVCSTLRSLEKGMKVHQDMVRGGIRPDIILGNTLIDMYAKCGNLKQAHRVFKEMDNRDI 216

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ++WN M+ G ++NG   EA + F  M     + DK +  S+++AC   +SLE G  + + 
Sbjct: 217 VTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDKVTYISILNAC---TSLEQGTLLHSV 273

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFI 487
           +   G + D  + T+LV+ + KCG +
Sbjct: 274 IMKAGFELDVRVGTALVNMFSKCGSV 299


>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
          Length = 822

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 235/471 (49%), Gaps = 23/471 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNST--LPIANRLLQMYMRCGNPTDALLLFD 65
           + R+LQ+C     + +G+ LH   +++G +     +P+ N +L MY +CG+   A  +FD
Sbjct: 114 ITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFD 173

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKT 121
           +M  R+  +WN+MI G+ +    E++  L + M Q+       +WN LIS +A+ G+L  
Sbjct: 174 KMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDV 233

Query: 122 ARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           A  L   M       + + W S++  +V    + EA+R F  +    VE    +   +A 
Sbjct: 234 AMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEP---NGMSIAC 290

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
            I ACA L  L   K++HSH +  G   + + G+SLV++Y KCG+  +A ++ + + + D
Sbjct: 291 AISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKD 350

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFH 293
            F  +++ISGYA  G    A  +F +  +     + + WN+MISGYI N +D  A  LF 
Sbjct: 351 IFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQ 410

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY---- 349
            M  +GV  D +T   +++     G+ +   ++      +    D I   +++  +    
Sbjct: 411 MMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLV 470

Query: 350 -SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
            S +     AC     L++ D  + N +I  YS  G +  A  +F    ++++ISWN +I
Sbjct: 471 ASWKVREIHACIFHHNLEL-DGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCII 529

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +    +GSP EALDLFC M +  +  D  +L +VI A      +  G Q F
Sbjct: 530 LAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTF 580



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 198/419 (47%), Gaps = 49/419 (11%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+  + AG L  AR +F+ M RR+ +AW++MI  Y   G   + + L   +   + E +
Sbjct: 51  LITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTM---VEEGV 107

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGKCGDFNS 225
             D F++  ++ ACA    LE G+ +HS  +  G      D  +G+S++ +Y KCGD   
Sbjct: 108 LPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGW 167

Query: 226 ANQVLNMM-----------------------------------KEPDDFCLSALISGYAN 250
           A +V + M                                    +P     + LIS YA 
Sbjct: 168 ARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYAR 227

Query: 251 CGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
            G ++ A  +  +  ++      V W S++SG++  +   EAL  F +MR  GV  +  +
Sbjct: 228 FGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMS 287

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +A  +SAC+SL  L   K++H HA KVG +++V+  ++L+D Y+K G    A ++FS + 
Sbjct: 288 IACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIP 347

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALD 422
             D    N+MI+ Y+  G    A  +F  M N    +++I+WN+MI G  +NG    A +
Sbjct: 348 DKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFE 407

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           LF  M    ++ D  +   +I+   +    +   ++F ++  +    D I   S++  +
Sbjct: 408 LFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAF 466



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 42/296 (14%)

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           +EP     + LI+ ++  G++ DAR VFD       + W++MI  Y      ++ L L  
Sbjct: 41  EEPRFVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAV 100

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK---VGVIDDVIVASALLDTYS 350
            M   GVL D   +  +L AC+    LE G+ +H  A +   +G + DV V +++L  Y+
Sbjct: 101 TMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYA 160

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---------- 400
           K G    A K+F ++   D    N+MI  Y      E+A+H+  +M  +           
Sbjct: 161 KCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNT 220

Query: 401 -----------------------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                                        +++W S++ G        EAL  F  M    
Sbjct: 221 LISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAG 280

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  +  S+A  ISACA++  L   +++ +    +G  ++ +   SLVD Y KCG I
Sbjct: 281 VEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEI 336


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 159/562 (28%), Positives = 245/562 (43%), Gaps = 118/562 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A ++F ++  R
Sbjct: 57  LQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVR 116

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------------ 112
           N FSW A+I    ++G  E +L  F  M +   F  N ++                    
Sbjct: 117 NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVH 176

Query: 113 ---------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                + K G L  AR +F+++P RN +AWN+++  YV+NG   
Sbjct: 177 GYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNE 236

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+RLF ++  + VE  +     ++T + A A++  +E GKQ H+  +VNGL+ D++LG+
Sbjct: 237 EAIRLFSDMRKEGVEPTR---VTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGT 293

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+N Y K G                                +  A  VFDR  D   V 
Sbjct: 294 SLLNFYCKVG-------------------------------LIEYAEMVFDRMFDKDVVT 322

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN +ISGY+      +A+ +   MR   +  D  TL++++SA +    L+ GK+V  +  
Sbjct: 323 WNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCI 382

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG------- 384
           +  +  D+++AS  +D Y+K G   DA K+F      D IL NT++  Y+  G       
Sbjct: 383 RHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALR 442

Query: 385 ----------------------------RIEDAKHIFRTM------PNKSLISWNSMIVG 410
                                        + +AK +F  M      PN  LISW +M+ G
Sbjct: 443 LFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPN--LISWTTMMNG 500

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           + QNG   EA+     M +  LR + FS+   +SA AN++SL  G  +   +      S 
Sbjct: 501 MVQNGCSEEAILFLRKMQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSS 560

Query: 471 QI-ISTSLVDFYCKCGFIKMDE 491
            + I TSLVD Y KCG I   E
Sbjct: 561 SVSIETSLVDMYAKCGDINKAE 582



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 238/503 (47%), Gaps = 97/503 (19%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 161 KACGALQWSRFGRGVHGYVIKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 219

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++LF+ M ++               S NM            
Sbjct: 220 VAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQSHAI 279

Query: 109 ---------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                          L++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 280 AIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISGYVQQGLVEDA 339

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +    +E+L+ D   L+T++ A A    L++GK++  + + + LD D VL S+ 
Sbjct: 340 IYMSQLMR---LEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDTDIVLASTT 396

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC---------------------- 251
           +++Y KCG    A +V +   E D    + L++ YA                        
Sbjct: 397 MDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNV 456

Query: 252 -------------GKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHK 294
                        G++N+A+ +F +   +      + W +M++G + N    EA+L   K
Sbjct: 457 ITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRK 516

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRG 353
           M+ +G+  +A ++   LSA ++L  L  G+ +HG+  + +     V + ++L+D Y+K G
Sbjct: 517 MQESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETSLVDMYAKCG 576

Query: 354 MPSDA-----CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISW 404
             + A      KL+SEL +Y     N MI+ Y+  G +++A  ++R++ +  +    +++
Sbjct: 577 DINKAERVFGSKLYSELPLY-----NAMISAYALYGNVKEAIALYRSLEDMGIKPDSVTF 631

Query: 405 NSMIVGLSQNGSPIEALDLFCNM 427
            S++   +  G   +A+ +F  M
Sbjct: 632 TSLLSACNHAGDIDQAVGVFTAM 654



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  +EA+ L  E++       +    I    +  C     L  GKQIH+ IL NG   
Sbjct: 27  KNGEIKEALSLVTEMD---FRNXRIGPEIYGEXLQGCVYERDLSTGKQIHARILKNG--- 80

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + N+ +           + L+  YA C  +  A  +F +  
Sbjct: 81  ----------------DFYARNEYIE----------TKLVIFYAKCDALEXAEVIFSKLR 114

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M  N +  D   + +V  AC +L +   G+ 
Sbjct: 115 VRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRG 174

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+ D V VAS+L D Y K                               CG 
Sbjct: 175 VHGYVIKAGLEDCVFVASSLADMYGK-------------------------------CGV 203

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++DA+ +F  +P +++++WN+++VG  QNG   EA+ LF +M K  +   + ++++ +SA
Sbjct: 204 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSA 263

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + GL+ D I+ TSL++FYCK G I+  E
Sbjct: 264 SANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAE 309



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 177/401 (44%), Gaps = 74/401 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +     ++  GK++  + ++   L++ + +A+  + MY +CG+  DA  +FD  
Sbjct: 358 LSTLMSAAARTENLKFGKEVQCYCIRHS-LDTDIVLASTTMDMYAKCGSIVDAKKVFDST 416

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + + G   ++L+LF  M       N  +WN++I    + GE+  A+
Sbjct: 417 VEKDLILWNTLLAAYAQSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAK 476

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N I+W +M++  V+NG + EA+   +++       L+ +AF +   +
Sbjct: 477 EMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQES---GLRPNAFSITVAL 533

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            A A+LA+L +G+ IH +I+ N     SV + +SLV++Y K                   
Sbjct: 534 SASANLASLHFGRSIHGYIIRNLRHSSSVSIETSLVDMYAK------------------- 574

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG +N A RVF     +   ++N+MIS Y       EA+ L+  +   
Sbjct: 575 ------------CGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALYRSLEDM 622

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G+  D+ T  S+LSAC+  G ++           VGV   +++   +       G+    
Sbjct: 623 GIKPDSVTFTSLLSACNHAGDIDQA---------VGVFTAMVLKHGMTPCLEHYGL---- 669

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
                            M+ + +S G  E A  +   MP K
Sbjct: 670 -----------------MVDLLASAGETEKAIRLIEEMPYK 693


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 232/514 (45%), Gaps = 105/514 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            L SC +  ++  G+++H   ++ G+L   + +AN +L MY +CG+  +A  +FD+M ++
Sbjct: 132 FLSSCKSPGALEWGREIHFQAMQAGLLFD-VKVANCILNMYAKCGSIEEAREVFDKMEKK 190

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------NDFS------W----- 106
           +  SW   I G+   G  E + ++F  M Q+             N FS      W     
Sbjct: 191 SVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVH 250

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L+  +AK G  K  R +F  +  R+ IAWN+MI      G+  
Sbjct: 251 SRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWE 310

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  ++ ++  + V   +    IL   + AC + AAL +GK+IHS +   G  F S +G 
Sbjct: 311 EASEVYNQMQREGVMPNKITYVIL---LNACVNSAALHWGKEIHSRVAKAG--FTSDIGV 365

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                         +ALIS Y+ CG + DAR VFD+      + 
Sbjct: 366 Q-----------------------------NALISMYSRCGSIKDARLVFDKMVRKDVIS 396

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MI G   +    EAL ++ +M++ GV  +  T  S+L+ACSS   LE G+++H    
Sbjct: 397 WTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV 456

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G+  D  V                                NT++ +YS CG ++DA+ 
Sbjct: 457 EAGLATDAHVG-------------------------------NTLVNMYSMCGSVKDARQ 485

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  M  + ++++N+MI G + +    EAL LF  + +  L+ DK +  ++++ACAN  S
Sbjct: 486 VFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 545

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           LE   ++   V   G  SD  +  +LV  Y KCG
Sbjct: 546 LEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCG 579



 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 245/527 (46%), Gaps = 114/527 (21%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALL 62
           DY+ ++L+ C     +  G+Q+H H ++    + T+P     N L+ MY++CG+  +A  
Sbjct: 25  DYM-KMLKRCIEVKDLVAGRQVHQHIIQ----HRTVPDQYTVNALINMYIQCGSIEEARQ 79

Query: 63  LFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------K 101
           ++ ++    R   SWNAM+ G+++ G+ EK+L+L   M Q                    
Sbjct: 80  VWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSP 139

Query: 102 NDFSW--------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
               W                    N +++ +AK G ++ AR +F+ M +++ ++W   I
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y   G +  A  +F+++     E +  +     +V+ A +  AAL++GK +HS IL  
Sbjct: 200 GGYADCGRSETAFEIFQKMEQ---EGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNA 256

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G + D+ +G+                               AL+  YA CG   D R+VF
Sbjct: 257 GHESDTAVGT-------------------------------ALVKMYAKCGSYKDCRQVF 285

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           ++  +   + WN+MI G        EA  ++++M+R GV+ +  T   +L+AC +   L 
Sbjct: 286 EKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALH 345

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK++H    K G   D+ V +AL                               I++YS
Sbjct: 346 WGKEIHSRVAKAGFTSDIGVQNAL-------------------------------ISMYS 374

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG I+DA+ +F  M  K +ISW +MI GL+++G   EAL ++  M +  +  ++ +  S
Sbjct: 375 RCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTS 434

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +++AC++ ++LE G ++  +V   GL +D  +  +LV+ Y  CG +K
Sbjct: 435 ILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVK 481



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 231/469 (49%), Gaps = 79/469 (16%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI Y++ +L + ++  ++  GK +H   L  G  + T  +   L++MY +CG+  D   +
Sbjct: 227 RITYIS-VLNAFSSPAALKWGKAVHSRILNAGHESDT-AVGTALVKMYAKCGSYKDCRQV 284

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDF------------- 104
           F+++  R+  +WN MI G  + G+ E++ +++N      VMP K  +             
Sbjct: 285 FEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAAL 344

Query: 105 SW--------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
            W                    N LIS +++ G +K AR +F+ M R++ I+W +MI   
Sbjct: 345 HWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGL 404

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            ++GF  EA+ +++E+    VE    +     +++ AC+  AALE+G++IH  ++  GL 
Sbjct: 405 AKSGFGAEALTVYQEMQQAGVEP---NRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA 461

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+ +G++LVN+Y                               + CG + DAR+VFDR 
Sbjct: 462 TDAHVGNTLVNMY-------------------------------SMCGSVKDARQVFDRM 490

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                V +N+MI GY ++N   EAL LF +++  G+  D  T  ++L+AC++ G LE  +
Sbjct: 491 IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAR 550

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H    K G   D  V +AL+ TY+K G  SDA  +F ++   + I  N +I   +  G
Sbjct: 551 EIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHG 610

Query: 385 RIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           R +DA  +F  M        ++++ S++   S  G   E    FC+M++
Sbjct: 611 RGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQ 659



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 126/273 (46%), Gaps = 51/273 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ Y + +L +C++  ++  G+++H   ++ G L +   + N L+ MY  CG+  DA  +
Sbjct: 429 RVTYTS-ILNACSSPAALEWGRRIHQQVVEAG-LATDAHVGNTLVNMYSMCGSVKDARQV 486

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------NDF 104
           FD M +R+  ++NAMI G+      +++L+LF+ + ++                      
Sbjct: 487 FDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 546

Query: 105 SW--------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
            W                    N L+S +AK G    A  +F  M +RN I+WN++I   
Sbjct: 547 EWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGS 606

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            ++G  ++A++LF+ +    +E ++ D     +++ AC+    LE G++   +      D
Sbjct: 607 AQHGRGQDALQLFERMK---MEGVKPDIVTFVSLLSACSHAGLLEEGRR---YFCSMSQD 660

Query: 205 FDSVLG----SSLVNLYGKCGDFNSANQVLNMM 233
           F  +        +V+L G+ G  + A  ++  M
Sbjct: 661 FAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTM 693



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 36/250 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y+  +L +C    S+   +++H   ++KG   S   + N L+  Y +CG+ +DA ++
Sbjct: 530 KVTYI-NMLNACANSGSLEWAREIHT-LVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGEL 119
           F++M +RN  SWNA+I G  + G  + +LQLF  M     + +  ++  L+S  + AG L
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 120 KTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           +  R  F  M +  AI      +  M+    R G   EA  L K +        Q +  I
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMP------FQANTRI 701

Query: 175 LATVIGACADLAALEYGKQIHSHILVN--------GLDFD-SVLGSSLVNLYGKCGDFNS 225
              ++GAC          +IH ++ V          LD D +V+  +L ++Y   G ++S
Sbjct: 702 WGALLGAC----------RIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDS 751

Query: 226 ANQVLNMMKE 235
           A ++  +M++
Sbjct: 752 AAKLRKLMEQ 761



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 33/207 (15%)

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           E   A+ +   +++ G   ++S    +L  C  +  L  G+QVH H         +I   
Sbjct: 3   EKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQH---------IIQHR 53

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSL 401
            + D Y+                      +N +I +Y  CG IE+A+ +++ +    +++
Sbjct: 54  TVPDQYT----------------------VNALINMYIQCGSIEEARQVWKKLSYMERTV 91

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
            SWN+M+VG  Q G   +AL L   M +  L  D+ ++ S +S+C +  +LE G ++  +
Sbjct: 92  HSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQ 151

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
               GL  D  ++  +++ Y KCG I+
Sbjct: 152 AMQAGLLFDVKVANCILNMYAKCGSIE 178


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 229/445 (51%), Gaps = 62/445 (13%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           + I+  + L+ +C +  S+  GK LH   +K  +   T  +AN L+ +Y +CG       
Sbjct: 76  STIEKFSSLISNCVSAKSLKHGKALHSQLIKTALFFETF-LANGLIDLYSKCG------- 127

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
                    C               KE   + F+ +P K   +WN L+S ++K G    A
Sbjct: 128 ---------C---------------KESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQA 163

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             LF++MP+RN +++NS+I    R+ F +EAV+ F+E+ +  V  L  D F L +++  C
Sbjct: 164 YKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNG-VGGLMLDEFTLVSLVSNC 222

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           + L  +++ +Q+H    + G   + +L ++L++ YGKCG+ NS+  +   M E D    +
Sbjct: 223 SCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWT 282

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           +++  Y    +++DA +VF+      +V W ++ISG++ N    EAL +FH+M + GVL 
Sbjct: 283 SMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLP 342

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            A T  SVL AC+S   +  GKQVH   C++                  RG  SD     
Sbjct: 343 RAQTFVSVLDACASEALIGRGKQVH---CQI-----------------IRGRSSD----- 377

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEAL 421
               +++  + N ++ +Y+ CG ++ A+++F  M + K ++SWN++I G +QNG   ++L
Sbjct: 378 ---NLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSL 434

Query: 422 DLFCNMNKLDLRMDKFSLASVISAC 446
            +F  M + ++  +  +   V+SAC
Sbjct: 435 AVFDRMIESNIEPNHVTFLGVLSAC 459



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 175/323 (54%), Gaps = 7/323 (2%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
            +++I  C    +L++GK +HS ++   L F++ L + L++LY KCG   S ++  + + 
Sbjct: 81  FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 140

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                  + L+S Y+  G  N A ++FD     + V +NS+ISG   +    EA+  F +
Sbjct: 141 NKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFRE 200

Query: 295 MRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           M+    G++ D  TL S++S CS L  ++  +QVHG A  VG   ++I+ +AL+D Y K 
Sbjct: 201 MQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKC 260

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G P+ +  LF  +   D +   +M+  Y+   RI+DA  +F  MP K  +SW ++I G  
Sbjct: 261 GEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFV 320

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           +NG   EAL++F  M K  +     +  SV+ ACA+ + +  G+QV  ++ I G  SD +
Sbjct: 321 KNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQI-IRGRSSDNL 379

Query: 473 IST----SLVDFYCKCGFIKMDE 491
            +     +L+D Y KCG +K  E
Sbjct: 380 FNVYVFNALMDMYAKCGDMKSAE 402



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 32/256 (12%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
           R N    NA+I+ + K G    S  LF  M +K+  SW  ++  + +A  +  A  +FN+
Sbjct: 244 RTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNE 303

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           MP +  ++W ++I  +V+NG   EA+ +F ++   + E +   A    +V+ ACA  A +
Sbjct: 304 MPVKYTVSWAALISGFVKNGRCYEALEVFHQM---IKEGVLPRAQTFVSVLDACASEALI 360

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             GKQ+H  I         + G S  NL+                   + +  +AL+  Y
Sbjct: 361 GRGKQVHCQI---------IRGRSSDNLF-------------------NVYVFNALMDMY 392

Query: 249 ANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           A CG M  A  +F+       V+ WN++I+G+  N    ++L +F +M  + +  +  T 
Sbjct: 393 AKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTF 452

Query: 308 ASVLSACSSLGFLEHG 323
             VLSAC+  G +  G
Sbjct: 453 LGVLSACNHAGLVNAG 468



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 17/244 (6%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS--TLPIANRLLQMYMRCGNPTDAL 61
           R      +L +C +   I  GKQ+H   ++    ++   + + N L+ MY +CG+   A 
Sbjct: 343 RAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAE 402

Query: 62  LLFDEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKA 116
            LF+ M   ++  SWN +I GF + G  E SL +F+ M +     N  ++  ++S    A
Sbjct: 403 NLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHA 462

Query: 117 GELKTARTLFNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G +     L + M RR  +   S     +I    R     EA+ L +++ +++   +   
Sbjct: 463 GLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIA-- 520

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
             +   V+G C     LE  ++    +     + ++     L N+Y   G ++  N++ N
Sbjct: 521 --MWGAVLGGCRVHGNLELARKAAEALFALEPE-NTGRYVMLSNIYAASGRWSDTNRIRN 577

Query: 232 MMKE 235
           +MKE
Sbjct: 578 VMKE 581


>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
 gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
          Length = 666

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 240/518 (46%), Gaps = 77/518 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+SC    S+  GK +HL  ++ G+L + + + N L+ MY +CG+   A  +FD M  R+
Sbjct: 13  LKSCVRIQSLAAGKFIHLLVIESGLL-TQISVGNALVNMYGKCGSLALAREVFDGMDHRD 71

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------------------------- 105
             SWNA+I  + + GH +++++LF  M +                               
Sbjct: 72  VISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSALEAGDKIF 131

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N L++ ++K G LK+A  +F  M  R+ ++WN++I    R+   
Sbjct: 132 ALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALARHDRK 191

Query: 151 REAVRLFKELN----SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
             A++ F+E+     S   E L  D F LA+ + AC     LE G++IH+ ++  G + +
Sbjct: 192 DIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESE 251

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            V+G++LV++                               YANCG + DA   F +   
Sbjct: 252 LVVGNALVSM-------------------------------YANCGTLQDALECFQKMAQ 280

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V WN+MI+ Y+ +N D EA  +FH+M+  GV  ++ T  + LSACS+    E G Q+
Sbjct: 281 RNVVSWNAMIAAYVHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQL 340

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    + G+  D  V +A++  ++K     DA   F  +   +    N ++  Y   GR+
Sbjct: 341 HSIVRESGLEADASVGNAVVHMFAKCWSLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRL 400

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            +A+ +F  M  + +I+WN ++    +     EA+ LF  M     + +  +  +++ AC
Sbjct: 401 AEARKLFEVMEERDVITWNMILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTMLGAC 460

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           A  + L  G ++   +   G DS+  +  +LVD + KC
Sbjct: 461 AGEALLAEGRRIHELIGERGADSELFVGNALVDMFGKC 498



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 225/496 (45%), Gaps = 80/496 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    ++  G ++     ++G+L+S + + N L+ MY +CG+   A ++F+ M  R
Sbjct: 114 VVSACCDPSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIR 173

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK-----NDFSW------------- 106
           +  SWNA+I    +   K+ ++Q F  M      P++     + F+              
Sbjct: 174 DVVSWNAIISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEML 233

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N L+S +A  G L+ A   F  M +RN ++WN+MI  Y
Sbjct: 234 EEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAY 293

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V +   +EA R+F ++    +E +Q ++    T + AC+  AA E G Q+HS +  +GL+
Sbjct: 294 VHHNCDKEAFRIFHQMQ---LEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLE 350

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+ +G+++V+++ KC   + A      + + +    + L+  Y + G++ +AR++F+  
Sbjct: 351 ADASVGNAVVHMFAKCWSLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRLAEARKLFEVM 410

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            +   + WN ++  Y+      EA+ LF +M   G   ++ T  ++L AC+    L  G+
Sbjct: 411 EERDVITWNMILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLAEGR 470

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H    + G   ++ V +AL+D + K                               C 
Sbjct: 471 RIHELIGERGADSELFVGNALVDMFGK-------------------------------CA 499

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            +  A+  F  +  K   SWN ++  L+QNG   EAL  F  M +  ++    +   V  
Sbjct: 500 SLGGARQAFERIRGKDASSWNVLVAALAQNGDAEEALKQFLQMQREGIKPTDVTFIVVFW 559

Query: 445 ACANISSLELGEQVFA 460
           AC++   LE  + +FA
Sbjct: 560 ACSHAGRLEQAKTIFA 575



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 140/320 (43%), Gaps = 69/320 (21%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T + +C  + +L  GK IH  ++ +GL     +G++LVN+YGK                 
Sbjct: 11  TALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGK----------------- 53

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                         CG +  AR VFD       + WN++I+ Y       EA+ LF  M+
Sbjct: 54  --------------CGSLALAREVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQ 99

Query: 297 RNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            +G +E D+ T  +V+SAC     LE G ++     + G++D                  
Sbjct: 100 EDGRIEPDSVTFVAVVSACCDPSALEAGDKIFALVEERGLLDS----------------- 142

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                        D +L N ++ +YS CG ++ A  +F  M  + ++SWN++I  L+++ 
Sbjct: 143 -------------DVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALARHD 189

Query: 416 SPIEALDLFCNMN-------KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
               A+  F  M        +  L  D F+LAS ++AC     LE G ++ A V   G +
Sbjct: 190 RKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCE 249

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           S+ ++  +LV  Y  CG ++
Sbjct: 250 SELVVGNALVSMYANCGTLQ 269



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 31/191 (16%)

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G+L D  +  + L +C  +  L  GK +H    + G++  + V +AL++ Y K G  + A
Sbjct: 1   GLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALA 60

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
            ++F  +   D I  N +IT Y+  G  ++A  +F+ M                Q    I
Sbjct: 61  REVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAM----------------QEDGRI 104

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSL 477
           E               D  +  +V+SAC + S+LE G+++FA V   G LDSD ++  +L
Sbjct: 105 EP--------------DSVTFVAVVSACCDPSALEAGDKIFALVEERGLLDSDVVLGNAL 150

Query: 478 VDFYCKCGFIK 488
           V+ Y KCG +K
Sbjct: 151 VNMYSKCGSLK 161


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 239/503 (47%), Gaps = 75/503 (14%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N+ L    R G    A  LFD MP RN  ++NAM+    + G  +++  LF+ MP +N 
Sbjct: 21  SNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNT 80

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            SWN +I+  +  G +  AR+LF+ MP R+  +W  M+ CY R G          EL  D
Sbjct: 81  VSWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDL--------ELARD 132

Query: 164 LVERL---QCDAFILATVIGACAD------------------------LAAL-EYGKQIH 195
           +++R+   +C A   A + G   +                        LA L + G+ + 
Sbjct: 133 VLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVR 192

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +    + +  D    + ++  + + GD N+A+     ++ P+      L++GY   G++ 
Sbjct: 193 AVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIA 252

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           DAR +FDR  + + V WN M+ GY+  +   EA  LF +M     ++++ +  +++S  +
Sbjct: 253 DARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEM----PIKNSISWTTIISGLA 308

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
             G L+  K +          + V   +AL+  Y +R M  DA ++F  ++V+DT+  NT
Sbjct: 309 RAGKLQEAKDLLDKMS----FNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNT 364

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--- 432
           MI+ Y  CG +E+A  +F+ MPNK ++SWN+MI G +Q+G   +A+ +F  MN+ +    
Sbjct: 365 MISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSW 424

Query: 433 ----------------------------RMDKFSLASVISACANISSLELGEQVFARVTI 464
                                       R D  + AS + ACAN++ L +G Q+   +  
Sbjct: 425 NSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVR 484

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
            G  +D     +L+  Y KCG I
Sbjct: 485 SGHINDSFAGNALISTYAKCGRI 507



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 204/446 (45%), Gaps = 66/446 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  L    + G    A+  FDEM + +  SWN M+ GF++ G    +   F  +   N  
Sbjct: 178 NSALAGLTQSGEMVRAVQFFDEMVK-DMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVI 236

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  L++G+ +AG +  AR LF+ MP RN +AWN M+  YV      EA +LF E+    
Sbjct: 237 SWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIK- 295

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQI----------------HSHILVNGLD---- 204
                 ++    T+I   A    L+  K +                H ++  N  D    
Sbjct: 296 ------NSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARR 349

Query: 205 -------FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
                   D+V  +++++ Y +CG    A  +   M   D    + +I+GYA  G+M+ A
Sbjct: 350 IFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKA 409

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
             +F R    ++V WNS+ISG++ N+   +AL  F  MRR     D ST AS L AC++L
Sbjct: 410 IGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANL 469

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G+Q+H    + G I+D    +AL+ T                             
Sbjct: 470 AVLHVGRQLHNLLVRSGHINDSFAGNALIST----------------------------- 500

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
             Y+ CGRI +AK IF  M  K ++SWN++I G + NG   EA+ +F  M    +R D+ 
Sbjct: 501 --YAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEV 558

Query: 438 SLASVISACANISSLELGEQVFARVT 463
           +   ++SAC++   ++ G   F  +T
Sbjct: 559 TFVGILSACSHAGLIDEGLFFFYSMT 584



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 18/190 (9%)

Query: 4   RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           R D+   A  L++C     +HVG+QLH   ++ G +N +    N L+  Y +CG   +A 
Sbjct: 453 RADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFA-GNALISTYAKCGRILEAK 511

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAG 117
            +FDEM  ++  SWNA+I+G+   G   +++ +F  M     + ++ ++  ++S  + AG
Sbjct: 512 QIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAG 571

Query: 118 ELKTARTLFNDMPRRN-----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            +      F  M +       A  +  M+    R G   EA  L + +      ++Q +A
Sbjct: 572 LIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGM------QIQPNA 625

Query: 173 FILATVIGAC 182
            +   ++GAC
Sbjct: 626 GVWGALLGAC 635


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 237/522 (45%), Gaps = 110/522 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+ C +   +   KQ      + G       + N L+Q Y +CG+  DA  +FD + 
Sbjct: 16  ASILRDCASARDLTAAKQAQWEIARDG-FGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQ 74

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-------------------- 108
           RRN FSW  M+  +   GH  ++L LF  +  +     N+                    
Sbjct: 75  RRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRG 134

Query: 109 -------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                              L+S + K G L+ A+ +F  +  RN ++WN+M+  Y +NG 
Sbjct: 135 IHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGH 194

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EAVRL++ +     E ++ DA    +V+         E+G +IH  +L +G   ++ L
Sbjct: 195 CEEAVRLYRLM---CFEGIKPDATTFVSVLDGWKGEG--EHGTRIHDQVLESGFGSNTTL 249

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            ++LV++YG                               + G+++DAR VFD   + + 
Sbjct: 250 ANALVSMYG-------------------------------SGGRVDDARYVFDGIAEKTV 278

Query: 270 VMWNSMISGYISNNEDTEALLLFHKM---RRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           V WN+M++ Y  N    +A+ LF KM   RR  V  ++ T  ++L AC++ GFLE G+++
Sbjct: 279 VSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKI 338

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H     +G++  + V  AL                               I +YS CG +
Sbjct: 339 HAEVASLGLLSTLSVGGAL-------------------------------INMYSECGNL 367

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             AK +F ++P+K+L+SWN +I   + +G   EAL +   M    L+ DKF+  SV+ AC
Sbjct: 368 VLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHAC 427

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +   +L  G+ + A +   GL+ D+ I T+L++ Y KCG ++
Sbjct: 428 SASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLE 469



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 218/513 (42%), Gaps = 106/513 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L++C     +  G+ +H      G   S + +A  L+ MY +CG+  +A  +F  +
Sbjct: 116 LVSALKACAVAGDLEEGRGIHASARSLG-YESEIIVATALVSMYGKCGHLEEAKAVFATL 174

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-----SW---------- 106
             RN  SWNAM+  + + GH E++++L+ +M      P    F      W          
Sbjct: 175 VERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGEHGTRI 234

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N L+S +   G +  AR +F+ +  +  ++WN+M+  Y +NG  
Sbjct: 235 HDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRY 294

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            +AV LF +++      ++ ++     ++ ACA    LE G++IH+ +   GL     +G
Sbjct: 295 GKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVG 354

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
            +L+N+Y +CG     N VL                          A+ VFD     + V
Sbjct: 355 GALINMYSECG-----NLVL--------------------------AKSVFDSVPHKNLV 383

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN +I  Y  + +  EAL +  KM   G+  D  T  SVL ACS+   L  GK +H   
Sbjct: 384 SWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALI 443

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G+  D  + +AL++ Y K                               CG +E A+
Sbjct: 444 AASGLERDEAIGTALINLYGK-------------------------------CGSLEQAR 472

Query: 391 HIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           ++F  M + ++L++WNSM+      G   + +++   M    +  D+ +  SV+ AC++ 
Sbjct: 473 NVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHG 532

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
            S++ G  +F    +     D  I+T+   + C
Sbjct: 533 GSIQQGLDLFLSAGV-----DYGIATNTKHYVC 560



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 31/184 (16%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S+ AS+L  C+S   L   KQ      + G   D  + + L+  Y K             
Sbjct: 13  SSHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGK------------- 59

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             CG + DA+ +F  +  +++ SW  M+   + NG   EAL LF
Sbjct: 60  ------------------CGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLF 101

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             +    + +D  +L S + ACA    LE G  + A    +G +S+ I++T+LV  Y KC
Sbjct: 102 REIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKC 161

Query: 485 GFIK 488
           G ++
Sbjct: 162 GHLE 165



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 11/196 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-R 69
           +L +C+   ++  GK +H      G L     I   L+ +Y +CG+   A  +F +M  R
Sbjct: 423 VLHACSASEALAEGKAIHALIAASG-LERDEAIGTALINLYGKCGSLEQARNVFLDMKSR 481

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTL 125
           RN  +WN+M+      G  E  +++ ++M       ++ ++  ++   +  G ++    L
Sbjct: 482 RNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDL 541

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL--QCDAFILATVIGACA 183
           F        IA N+  +  V +   R   RL  E   +++ R+  Q +     T++GAC 
Sbjct: 542 FLSAGVDYGIATNTKHYVCVVDILGRVG-RL--EEAQEVLNRMPFQANDVAWMTLLGACR 598

Query: 184 DLAALEYGKQIHSHIL 199
                E G++   +++
Sbjct: 599 IHRDFEQGRRAADYVI 614


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/516 (29%), Positives = 237/516 (45%), Gaps = 112/516 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   +Q H      G++   + IA +L+ +Y   G   DA L+FD++P  
Sbjct: 50  LLSKCTNIDSL---RQSHGVLTGNGLMGD-ISIATKLVSLYGFFGYTKDARLVFDQIPEP 105

Query: 71  NCFSWNAMIEGF----------------MKLGHK------EKSL---------------- 92
           + + W  M+  +                MK G +       K+L                
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165

Query: 93  -QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            QL  V P  ++     L+  +AK GE+K+A  +FND+  RN + W SMI  YV+N    
Sbjct: 166 CQLVKV-PSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCE 224

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E + LF  +  +    +  + +   T+I AC  L+AL  GK  H  ++ +G++  S L +
Sbjct: 225 EGLVLFNRMREN---NVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVT 281

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC                               G +++ARRVF+  +    VM
Sbjct: 282 SLLDMYVKC-------------------------------GDISNARRVFNEHSHVDLVM 310

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MI GY  N    EAL LF KM+   +  +  T+ASVLS C  +  LE G+ VHG + 
Sbjct: 311 WTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSI 370

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           KVG+                                +DT + N ++ +Y+ C +  DAK+
Sbjct: 371 KVGI--------------------------------WDTNVANALVHMYAKCYQNRDAKY 398

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F     K +++WNS+I G SQNGS  EAL LF  MN   +  +  ++AS+ SACA++ S
Sbjct: 399 VFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGS 458

Query: 452 LELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG 485
           L +G  + A    +G    S   + T+L+DFY KCG
Sbjct: 459 LAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 71/353 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    ++H GK  H   +K GI  S+  +   LL MY++CG+ ++A  +F+E    
Sbjct: 248 LIMACTKLSALHQGKWFHGCLVKSGIELSSC-LVTSLLDMYVKCGDISNARRVFNEHSHV 306

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS--------------------- 105
           +   W AMI G+   G   ++L LF  M     + N  +                     
Sbjct: 307 DLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVH 366

Query: 106 --------W-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                   W     N L+  +AK  + + A+ +F     ++ +AWNS+I  + +NG   E
Sbjct: 367 GLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHE 426

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF  +NS   E +  +   +A++  ACA L +L  G  +H++ +  G      L SS
Sbjct: 427 ALFLFHRMNS---ESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGF-----LASS 478

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
            V++                         +AL+  YA CG    AR +FD   + +++ W
Sbjct: 479 SVHVG------------------------TALLDFYAKCGDPQSARLIFDTIEEKNTITW 514

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           ++MI GY    +   +L LF +M +     + ST  S+LSAC   G +  GK+
Sbjct: 515 SAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKK 567



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 32/246 (13%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + L+S Y   G   DAR VFD+  +    +W  M+  Y  N E  E + L+  + ++G  
Sbjct: 80  TKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFR 139

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D    +  L AC+ L  L++GK++H    KV                     PS     
Sbjct: 140 YDDIVFSKALKACTELQDLDNGKKIHCQLVKV---------------------PS----- 173

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                 +D ++L  ++ +Y+ CG I+ A  +F  +  ++++ W SMI G  +N    E L
Sbjct: 174 ------FDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGL 227

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
            LF  M + ++  ++++  ++I AC  +S+L  G+     +   G++    + TSL+D Y
Sbjct: 228 VLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMY 287

Query: 482 CKCGFI 487
            KCG I
Sbjct: 288 VKCGDI 293



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 21/240 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A L  +C +  S+ VG  LH + +K G L +S++ +   LL  Y +CG+P  A L+FD 
Sbjct: 446 VASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDT 505

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTA 122
           +  +N  +W+AMI G+ K G    SL+LF  M +K    N+ ++  ++S     G +   
Sbjct: 506 IEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEG 565

Query: 123 RTLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL--QCDAFIL 175
           +  F+ M +      +   +  M+    R G   +A+        D++E++  Q D    
Sbjct: 566 KKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQAL--------DIIEKMPIQPDVRCF 617

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
              +  C   +  + G+ +   +L    D D+     + NLY   G +N A +V N+MK+
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPD-DASYYVLVSNLYASDGRWNQAKEVRNLMKQ 676



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D  +   ++++Y   G  +DA+ +F  +P      W  M+     N   +E + L+  + 
Sbjct: 75  DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLM 134

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           K   R D    +  + AC  +  L+ G+++  ++  +    D ++ T L+D Y KCG IK
Sbjct: 135 KHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIK 193


>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
 gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
          Length = 859

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 235/471 (49%), Gaps = 23/471 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNST--LPIANRLLQMYMRCGNPTDALLLFD 65
           + R+LQ+C     + +G+ LH   +++G +     +P+ N +L MY +CG+   A  +FD
Sbjct: 151 ITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFD 210

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKT 121
           +M  R+  +WN+MI G+ +    E++  L + M Q+       +WN LIS +A+ G+L  
Sbjct: 211 KMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDV 270

Query: 122 ARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           A  L   M       + + W S++  +V    + EA+R F  +    VE    +   +A 
Sbjct: 271 AMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEP---NGMSIAC 327

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
            I ACA L  L   K++HSH +  G   + + G+SLV++Y KCG+  +A ++ + + + D
Sbjct: 328 AISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKD 387

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFH 293
            F  +++ISGYA  G    A  +F +  +     + + WN+MISGYI N +D  A  LF 
Sbjct: 388 IFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQ 447

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY---- 349
            M  +GV  D +T   +++     G+ +   ++      +    D I   +++  +    
Sbjct: 448 MMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLV 507

Query: 350 -SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
            S +     AC     L++ D  + N +I  YS  G +  A  +F    ++++ISWN +I
Sbjct: 508 ASWKVREIHACIFHHNLEL-DGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCII 566

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +    +GSP EALDLFC M +  +  D  +L +VI A      +  G Q F
Sbjct: 567 LAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTF 617



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 197/419 (47%), Gaps = 49/419 (11%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+  + AG L  AR +F+ M RR+ +AW++MI  Y   G   + + L   +   + E +
Sbjct: 88  LITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTM---VEEGV 144

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGKCGDFNS 225
             D F++  ++ ACA    LE G+ +HS  +  G      D  +G+S++ +Y KCGD   
Sbjct: 145 LPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGW 204

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--RTTDTSS-------------- 269
           A +V + M   D    +++I GY    +  +AR + D  R   T                
Sbjct: 205 ARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYAR 264

Query: 270 -----------------------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
                                  V W S++SG++  +   EAL  F +MR  GV  +  +
Sbjct: 265 FGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMS 324

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +A  +SAC+SL  L   K++H HA KVG +++V+  ++L+D Y+K G    A ++FS + 
Sbjct: 325 IACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIP 384

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALD 422
             D    N+MI+ Y+  G    A  +F  M N    +++I+WN+MI G  +NG    A +
Sbjct: 385 DKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFE 444

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           LF  M    ++ D  +   +I+   +    +   ++F ++  +    D I   S++  +
Sbjct: 445 LFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAF 503



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 42/296 (14%)

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           +EP     + LI+ ++  G++ DAR VFD       + W++MI  Y      ++ L L  
Sbjct: 78  EEPRFVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAV 137

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK---VGVIDDVIVASALLDTYS 350
            M   GVL D   +  +L AC+    LE G+ +H  A +   +G + DV V +++L  Y+
Sbjct: 138 TMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYA 197

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---------- 400
           K G    A K+F ++   D    N+MI  Y      E+A+H+  +M  +           
Sbjct: 198 KCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNT 257

Query: 401 -----------------------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                                        +++W S++ G        EAL  F  M    
Sbjct: 258 LISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAG 317

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  +  S+A  ISACA++  L   +++ +    +G  ++ +   SLVD Y KCG I
Sbjct: 318 VEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEI 373


>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g18840-like [Cucumis
           sativus]
          Length = 1096

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/493 (30%), Positives = 245/493 (49%), Gaps = 37/493 (7%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D R+ Y A  L      H  H G   HL  +K G    T+ ++N+L+  Y + G   DA 
Sbjct: 409 DARLVYTAGRLVFHEMKHLKH-GLLCHLQGIKSG-FTPTIFMSNQLITFYAKHGLLNDAQ 466

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            LFDE                               MP++N FSWN +I+ + K+  L+ 
Sbjct: 467 KLFDE-------------------------------MPERNVFSWNAIIAAYVKSHNLRQ 495

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVR-NGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           AR LF+    ++ + +NSM+  Y R +G+  +A+  F E+ +   + ++ D F L T++ 
Sbjct: 496 ARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQT-APDMIRIDEFTLITMLN 554

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP-DDF 239
             A L  + YGKQ+HS +L    D      SSL+++Y KCG F  A +V     E  D  
Sbjct: 555 LTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSV 614

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRN 298
             +A+++     G+++ A  +F +  + + V+ WN+MISG++ N  + E+L LF +M   
Sbjct: 615 SRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADE 674

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  +  T ASVLSACS+L  L+ GK+VH +  K  +I +  + S L+D Y K      A
Sbjct: 675 KVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYA 734

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
             + SEL++ +   + +MI  YSS G + +A+ +F ++  K+   W ++  G  +     
Sbjct: 735 KSVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCE 794

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
              +L     K     D   L S+I ACA  ++L  G+Q+ + +   G+  D  +++SLV
Sbjct: 795 AVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLV 854

Query: 479 DFYCKCGFIKMDE 491
           D Y KCG I   E
Sbjct: 855 DMYSKCGSIIYAE 867



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 213/440 (48%), Gaps = 66/440 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GKQLH  F+ K   + T+  A+ L+ MY +CG        F E  R           
Sbjct: 562 ISYGKQLH-SFMLKTANDLTVFAASSLIDMYSKCG-------FFKEACRV---------- 603

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF-NDMPRRNAIAWNS 139
            +   G    S+            S N +++   + GE+  A  LF  ++ + + +AWN+
Sbjct: 604 -YYGCGEVVDSV------------SRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNT 650

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           MI  +V+NG+  E+++LF  +     E++  +    A+V+ AC++L +L+ GK++H+++L
Sbjct: 651 MISGFVQNGYEEESLKLFVRMAD---EKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVL 707

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
            N L  +  + S LV++Y KC +   A  V + ++  + + ++++I GY++ G M +AR+
Sbjct: 708 KNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGNMAEARK 767

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FD   + +S +W ++  GY+   +      L  + R+   + D   L S++ AC+    
Sbjct: 768 LFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAA 827

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  GKQ+H +  + G+  D  + S+L+D YSK G    A ++F E+   D+I+ N MI  
Sbjct: 828 LVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAG 887

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+  G                   W +            EA+ LF  M K   + D  + 
Sbjct: 888 YAHHG-------------------WEN------------EAVQLFKEMVKHGFKPDAITF 916

Query: 440 ASVISACANISSLELGEQVF 459
            +++SAC +   +ELGE  F
Sbjct: 917 VALLSACRHGGLVELGEHFF 936



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 148/318 (46%), Gaps = 66/318 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+   S+ +GK++H + LK  ++ +   I + L+ +Y +C N   A  +  E+
Sbjct: 683 FASVLSACSNLRSLKLGKEVHAYVLKNRLIANPF-ICSGLVDVYCKCNNMRYAKSVNSEL 741

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             +N +S  +MI                                G++  G +  AR LF+
Sbjct: 742 RMQNVYSITSMI-------------------------------VGYSSQGNMAEARKLFD 770

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  +N+  W ++   YV+    ++   +F+ L+    E    D  IL ++IGACA  AA
Sbjct: 771 SLDEKNSAVWTALFFGYVK---LQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAA 827

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GKQIHS++L  G+  D+ L SSLV++Y K                            
Sbjct: 828 LVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSK---------------------------- 859

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              CG +  A R+F   TD  S+++N MI+GY  +  + EA+ LF +M ++G   DA T 
Sbjct: 860 ---CGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITF 916

Query: 308 ASVLSACSSLGFLEHGKQ 325
            ++LSAC   G +E G+ 
Sbjct: 917 VALLSACRHGGLVELGEH 934


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/479 (28%), Positives = 234/479 (48%), Gaps = 51/479 (10%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           HH  H G++L  H      L ++ P+A+ L       G       +         F  N 
Sbjct: 6   HH--HRGQELVAH------LRASSPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNT 57

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAW 137
           ++  + +LG   ++ ++F+ +P +N FS+N L+S +A+ G    AR LF  +P  +  ++
Sbjct: 58  LVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSY 117

Query: 138 NSMIHCYVRNG--FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           N+++    R+G   A +A+R    +++D       +A+  A+ + ACA    L  G+Q+H
Sbjct: 118 NAVVAALARHGRGHAGDALRFLAAMHAD---DFVLNAYSFASALSACAAEKDLRTGEQVH 174

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             +  +    D  +G++LV++Y K                               C +  
Sbjct: 175 GLVARSPHADDVHIGTALVDMYAK-------------------------------CERPV 203

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           DARRVFD   + + V WNS+I+ Y  N    EAL+LF +M   G   D  TL+SV+SAC+
Sbjct: 204 DARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACA 263

Query: 316 SLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
            L     G+QVH H  K   + DD+++ +AL+D Y+K G   +A  +F  +     +   
Sbjct: 264 GLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSET 323

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           +++  Y+    +EDA+ +F  M  K++I+WN +I   +QNG   EA+ LF  + +  +  
Sbjct: 324 SILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWP 383

Query: 435 DKFSLASVISACANISSLELGEQVFARVTI------IGLDSDQIISTSLVDFYCKCGFI 487
             ++  +V++AC NI+ L+LG+Q    V         G +SD  +  SLVD Y K G I
Sbjct: 384 THYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSI 442



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 228/496 (45%), Gaps = 83/496 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK--LGHKEKSLQLFNVMPQK- 101
           N LL  Y R G P +A  LF+ +P  +  S+NA++    +   GH   +L+    M    
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADD 146

Query: 102 ---NDFSWNMLISGFAKAGELKT-----------------------------------AR 123
              N +S+   +S  A   +L+T                                   AR
Sbjct: 147 FVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDAR 206

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+ MP RN ++WNS+I CY +NG   EA+ LF E+   +      D   L++V+ ACA
Sbjct: 207 RVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEM---MATGFFPDEVTLSSVMSACA 263

Query: 184 DLAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
            LAA   G+Q+H+H++  + L  D VL ++LV++Y KCG    A  + + M        +
Sbjct: 264 GLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSET 323

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           ++++GYA    + DA+ VF +  + + + WN +I+ Y  N E+ EA+ LF +++R+ +  
Sbjct: 324 SILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWP 383

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACK------VGVIDDVIVASALLDTYSKRGMPS 356
              T  +VL+AC ++  L+ G+Q H H  K       G   DV V ++L+D Y K G   
Sbjct: 384 THYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 443

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           D  K+F  +   D +  N MI  Y+  GR +DA H+F  M              L  N +
Sbjct: 444 DGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM--------------LCSNEN 489

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIIST 475
           P                 D  ++  V+SAC +   ++ G + F  +T   G+   +   T
Sbjct: 490 P-----------------DSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYT 532

Query: 476 SLVDFYCKCGFIKMDE 491
            +VD   + G +K  E
Sbjct: 533 CMVDLLGRAGHLKEAE 548



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 147/324 (45%), Gaps = 71/324 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C    +   G+Q+H H +K+  L   + + N L+ MY +CG   +A  +FD M
Sbjct: 255 LSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSM 314

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  S  +++ G+ K  + E +  +F+ M +KN  +WN+LI+ +A+            
Sbjct: 315 PSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ------------ 362

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                              NG   EA+RLF +L  D +       +    V+ AC ++A 
Sbjct: 363 -------------------NGEEEEAIRLFVQLKRDSIWPTH---YTYGNVLNACGNIAV 400

Query: 188 LEYGKQIHSHILVNGLDF------DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           L+ G+Q H H+L  G  F      D  +G+SLV++Y K G  +   +V   M   D+   
Sbjct: 401 LQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSW 460

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A+I GYA  G+  DA  +F+R                + +NE+                
Sbjct: 461 NAMIVGYAQNGRAKDALHLFERM---------------LCSNENP--------------- 490

Query: 302 EDASTLASVLSACSSLGFLEHGKQ 325
            D+ T+  VLSAC   G ++ G++
Sbjct: 491 -DSVTMIGVLSACGHSGLVDEGRR 513


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 162/566 (28%), Positives = 253/566 (44%), Gaps = 120/566 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 74  GEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKL 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGR 193

Query: 111 --------SG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                   SG              + K G L  A  +F+++P RNA+AWN+++  YV+NG
Sbjct: 194 GVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNG 253

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RLF ++    VE  +     ++T + A A++  +E GKQ H+  +VNG++ D++
Sbjct: 254 KNEEAIRLFSDMRKQGVEPTR---VTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNI 310

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+SL+N Y K G                                +  A  VFDR  +  
Sbjct: 311 LGTSLLNFYCKVG-------------------------------LIEYAEMVFDRMFEKD 339

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      +A+ +   MR   +  D  TLA+++SA +    L+ GK+V  
Sbjct: 340 VVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQC 399

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  +     D+++AS ++D Y+K G   DA K+F      D IL NT++  Y+  G    
Sbjct: 400 YCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGE 459

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++++AK +F  M      PN  LISW +M
Sbjct: 460 ALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPN--LISWTTM 517

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + G+ QNG   EA+     M +  LR + FS+   +SACA+++SL +G  +   + I  L
Sbjct: 518 MNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYI-IRNL 576

Query: 468 DSDQIIS--TSLVDFYCKCGFIKMDE 491
               ++S  TSLVD Y KCG I   E
Sbjct: 577 QHSSLVSIETSLVDMYAKCGDINKAE 602



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/529 (23%), Positives = 235/529 (44%), Gaps = 112/529 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 181 KACGALKWSRFGRGVHGYVVKSG-LEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNA 239

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++LF+ M ++               S NM            
Sbjct: 240 VAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAI 299

Query: 109 ---------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                          L++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 300 AIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDA 359

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +    +E+L+ D   LAT++ A A    L+ GK++  + + +  + D VL S++
Sbjct: 360 IYMCQLMR---LEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTV 416

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------------ 261
           +++Y KCG    A +V +   E D    + L++ YA  G   +A R+F            
Sbjct: 417 MDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNV 476

Query: 262 ----------------DRTTD------TSSVM-----WNSMISGYISNNEDTEALLLFHK 294
                           D   D      +S ++     W +M++G + N    EA+L   K
Sbjct: 477 ITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRK 536

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ +G+  +A ++   LSAC+ L  L  G+ +HG                    Y  R +
Sbjct: 537 MQESGLRPNAFSITVALSACAHLASLHIGRTIHG--------------------YIIRNL 576

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                   S L   +T    +++ +Y+ CG I  A+ +F +     L   N+MI   +  
Sbjct: 577 Q------HSSLVSIET----SLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALY 626

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           G+  EA+ L+ ++  + L+ D  ++ +V+SAC +   +    ++F  + 
Sbjct: 627 GNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIV 675



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  +EA+ L  E++      L+    I   ++  C     L  GKQIH+ IL NG   
Sbjct: 47  KNGEIKEALSLVTEMD---FRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNG--- 100

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + N+ +           + L+  YA C  +  A  +F +  
Sbjct: 101 ----------------DFYARNEYIE----------TKLVIFYAKCDALEIAEVLFSKLR 134

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M  N +  D   + +V  AC +L +   G+ 
Sbjct: 135 VRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRG 194

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+ D V VAS+L D Y K                               CG 
Sbjct: 195 VHGYVVKSGLEDCVFVASSLADMYGK-------------------------------CGV 223

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++DA  +F  +P+++ ++WN+++VG  QNG   EA+ LF +M K  +   + ++++ +SA
Sbjct: 224 LDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSA 283

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + G++ D I+ TSL++FYCK G I+  E
Sbjct: 284 SANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAE 329



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 178/400 (44%), Gaps = 72/400 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +     ++ +GK++  + ++     S + +A+ ++ MY +CG+  DA  +FD  
Sbjct: 378 LATLMSAAARTENLKLGKEVQCYCIRHS-FESDIVLASTVMDMYAKCGSIVDAKKVFDST 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + + G   ++L+LF  M       N  +WN++I    + G++  A+
Sbjct: 437 VEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAK 496

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N I+W +M++  V+NG + EA+   +++       L+ +AF +   +
Sbjct: 497 DMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQES---GLRPNAFSITVAL 553

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA LA+L  G+ IH +I+ N      +  SSLV++                       
Sbjct: 554 SACAHLASLHIGRTIHGYIIRN------LQHSSLVSIE---------------------- 585

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
             ++L+  YA CG +N A +VF     +   + N+MIS Y       EA+ L+  +   G
Sbjct: 586 --TSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVG 643

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D  T+ +VLSAC+  G +    ++                    D  SKR M    C
Sbjct: 644 LKPDNITITNVLSACNHAGDINQAIEI------------------FTDIVSKRSM--KPC 683

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
                L+ Y       M+ + +S G  E A  +   MP K
Sbjct: 684 -----LEHY-----GLMVDLLASAGETEKALRLIEEMPFK 713



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +KH      + S  S+   +  L +NG   EAL L   M+  +LR+       ++  C  
Sbjct: 23  SKHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVY 82

Query: 449 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
              L  G+Q+ AR+   G     ++ I T LV FY KC  +++ E
Sbjct: 83  ERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAE 127


>gi|297741429|emb|CBI32560.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 243/476 (51%), Gaps = 37/476 (7%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G + H H +K GI  ST+  +N+L+ +Y +                          
Sbjct: 3   SIKDGFRFHAHAIKNGI-TSTVFTSNQLIHLYSK-------------------------- 35

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            GF+   HK     LF+ MP++N F+WN +I  + K   LK AR LF+  P ++ + +NS
Sbjct: 36  HGFLAEAHK-----LFDEMPERNVFTWNAIIWAYIKTQNLKQARELFDSAPSKDLVTYNS 90

Query: 140 MIHCYVR-NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           M+  Y+  +G+   A++LF E+ S L +  + D F L  ++   A L+   YGKQ+HS++
Sbjct: 91  MLSGYINTDGYETNALKLFIEMQS-LNDETRIDEFSLTRMLNLSAKLSMESYGKQLHSYM 149

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDA 257
           +    +      SSL+++Y KCG F    QV +      D    +A+++     G++   
Sbjct: 150 VKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVLDLVSKNAMVAACCREGELEMG 209

Query: 258 RRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
             +F R  + + V+ WN++ISGY+ N  + +AL LF  M  N V  +  T+A +LSAC+ 
Sbjct: 210 VNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHTIAGLLSACAG 269

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           L  L+ GK+VHG   K  +  +  ++S L+D Y K G    A  +++ +   +   + +M
Sbjct: 270 LRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNAFSITSM 329

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMD 435
           I  +SS G + +A+ +F ++  KS I W ++  G  ++       +L      K  +  D
Sbjct: 330 IVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVPD 389

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              L SV+ ACA  ++L  G+Q+ A V  IG++ D+ + +++VD Y K G IK  E
Sbjct: 390 ALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKSGNIKYAE 445



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 227/466 (48%), Gaps = 69/466 (14%)

Query: 2   DTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           +TRID   L R+L           GKQLH + +K     S   +++ L+ MY +CG   +
Sbjct: 118 ETRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSS-LIDMYSKCGCFRE 176

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
              +FD      C        G + L  K                  N +++   + GEL
Sbjct: 177 VCQVFD-----GC-------AGVLDLVSK------------------NAMVAACCREGEL 206

Query: 120 KTARTLF-NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +    LF  D+   + ++WN++I  YV+NG   +A++LF  +  + V   + +   +A +
Sbjct: 207 EMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEV---RWNEHTIAGL 263

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + ACA L +L+ GK++H  +L   L F+  + S LV++Y KCG+   A  V   +   + 
Sbjct: 264 LSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNA 323

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-R 297
           F ++++I G+++ G M +ARR+FD  T+ SS++W ++ +GY+ + +      L  + R +
Sbjct: 324 FSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVK 383

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
             ++ DA  L SVL AC+    L  GKQ+H +  ++G+                      
Sbjct: 384 EAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGI---------------------- 421

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                 EL   D  L++ M+ +YS  G I+ A+ IF+ + N+  + +N M  G + +G  
Sbjct: 422 ------EL---DEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHE 472

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
            +A+  F  M +  +R D  +  +++SAC +   +ELGE+ FA +T
Sbjct: 473 NQAIQQFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMT 518



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 65/344 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C    S+ +GK++H   LK   L     I++ L+ +Y +CGN   A L++  +
Sbjct: 260 IAGLLSACAGLRSLKLGKEVHGWVLKYE-LGFNPFISSGLVDVYCKCGNMKYAELVYATI 318

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              N FS  +MI     +GH  +                          G +  AR LF+
Sbjct: 319 GTGNAFSITSMI-----VGHSSQ--------------------------GNMGEARRLFD 347

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  +++I W ++   YV++        L  E    + E +  DA IL +V+GACA  AA
Sbjct: 348 SLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFR--VKEAMVPDALILISVLGACAIQAA 405

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GKQIH+++L  G++ D  L S++V++                               
Sbjct: 406 LNPGKQIHAYVLRIGIELDEKLVSAMVDM------------------------------- 434

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+  G +  A ++F R T+  +V++N M +GY  +  + +A+  F +M   GV  DA T 
Sbjct: 435 YSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTF 494

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
            ++LSAC   G +E G++         ++ ++   + ++D Y +
Sbjct: 495 VALLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGR 538


>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
           Group]
          Length = 1111

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 235/471 (49%), Gaps = 23/471 (4%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNST--LPIANRLLQMYMRCGNPTDALLLFD 65
           + R+LQ+C     + +G+ LH   +++G +     +P+ N +L MY +CG+   A  +FD
Sbjct: 151 ITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGWARKVFD 210

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKT 121
           +M  R+  +WN+MI G+ +    E++  L + M Q+       +WN LIS +A+ G+L  
Sbjct: 211 KMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYARFGDLDV 270

Query: 122 ARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           A  L   M       + + W S++  +V    + EA+R F  +    VE    +   +A 
Sbjct: 271 AMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVE---PNGMSIAC 327

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
            I ACA L  L   K++HSH +  G   + + G+SLV++Y KCG+  +A ++ + + + D
Sbjct: 328 AISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKD 387

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFH 293
            F  +++ISGYA  G    A  +F +  +     + + WN+MISGYI N +D  A  LF 
Sbjct: 388 IFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQ 447

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY---- 349
            M  +GV  D +T   +++     G+ +   ++      +    D I   +++  +    
Sbjct: 448 MMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLV 507

Query: 350 -SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
            S +     AC     L++ D  + N +I  YS  G +  A  +F    ++++ISWN +I
Sbjct: 508 ASWKVREIHACIFHHNLEL-DGKIANALINAYSKSGNLASACAVFDMHSSRNIISWNCII 566

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +    +GSP EALDLFC M +  +  D  +L +VI A      +  G Q F
Sbjct: 567 LAHVLHGSPNEALDLFCQMKQEGVVPDHTTLVTVIKAYGLTGKVSEGSQTF 617



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 198/419 (47%), Gaps = 49/419 (11%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+  + AG L  AR +F+ M RR+ +AW++MI  Y   G   + + L   +   + E +
Sbjct: 88  LITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAVTM---VEEGV 144

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGKCGDFNS 225
             D F++  ++ ACA    LE G+ +HS  +  G      D  +G+S++ +Y KCGD   
Sbjct: 145 LPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKCGDLGW 204

Query: 226 ANQVLNMM-----------------------------------KEPDDFCLSALISGYAN 250
           A +V + M                                    +P     + LIS YA 
Sbjct: 205 ARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNTLISSYAR 264

Query: 251 CGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
            G ++ A  +  +  ++      V W S++SG++  +   EAL  F +MR  GV  +  +
Sbjct: 265 FGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMS 324

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +A  +SAC+SL  L   K++H HA KVG +++V+  ++L+D Y+K G    A ++FS + 
Sbjct: 325 IACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIP 384

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALD 422
             D    N+MI+ Y+  G    A  +F  M N    +++I+WN+MI G  +NG    A +
Sbjct: 385 DKDIFSWNSMISGYAQAGYCGKAYELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFE 444

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           LF  M    ++ D  +   +I+   +    +   ++F ++  +    D I   S++  +
Sbjct: 445 LFQMMESHGVKRDTATWNILIAGSVHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAF 503



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 42/296 (14%)

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           +EP     + LI+ ++  G++ DAR VFD       + W++MI  Y      ++ L L  
Sbjct: 78  EEPRFVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALAV 137

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK---VGVIDDVIVASALLDTYS 350
            M   GVL D   +  +L AC+    LE G+ +H  A +   +G + DV V +++L  Y+
Sbjct: 138 TMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYA 197

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---------- 400
           K G    A K+F ++   D    N+MI  Y      E+A+H+  +M  +           
Sbjct: 198 KCGDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVTWNT 257

Query: 401 -----------------------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                                        +++W S++ G        EAL  F  M    
Sbjct: 258 LISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVSGFVHMDRSDEALRCFIRMRLAG 317

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  +  S+A  ISACA++  L   +++ +    +G  ++ +   SLVD Y KCG I
Sbjct: 318 VEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMYAKCGEI 373


>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 631

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 145/523 (27%), Positives = 243/523 (46%), Gaps = 118/523 (22%)

Query: 8   LARLLQSCNTHHSIHVG----KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           LA ++ +C     + VG    KQ+H   +K G  +  + +   L+ +Y + GN  +A L+
Sbjct: 45  LASVISAC-----VQVGGSIDKQMHGFAVKSG-FDRNVYVGTSLVDLYAKGGNIDEARLV 98

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--------------------- 102
           FD +  ++  +W  +I   +K G  E SLQLF+ M + N                     
Sbjct: 99  FDGLLEKSAVTWTTIITACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFV 158

Query: 103 -----------------DFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                            D S+ N+LI  + K+G++++AR LF+ M  RN I+W +MI  Y
Sbjct: 159 QGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGY 218

Query: 145 VRNGFAREAVRLFKELNSDLVERL--QCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
           ++N F REAV+LF E+      RL  + D F+  +++ +C  L ALE G+Q+H++ +   
Sbjct: 219 MQNSFDREAVKLFIEMT-----RLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGN 273

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           ++ D  L + L+++Y KCG  N A +V + M   +    +ALI GY+   ++        
Sbjct: 274 VESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQL-------- 325

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                                  +EA+ LF +MR   +     T  S+L A ++L  LE 
Sbjct: 326 -----------------------SEAMNLFREMRHGMLSPSFLTFVSLLGASATLSALEL 362

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GKQ+H    K G+  ++   SAL+D YSK                               
Sbjct: 363 GKQIHALITKFGISMEIFAGSALIDFYSK------------------------------- 391

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           C  + DA+ +F  M  K ++ WN+M+ G +Q     EAL L+  +   + + +  + A++
Sbjct: 392 CSCLMDARLVFDKMTEKDIVVWNAMLFGYTQQLENEEALKLYTELQISEPKPNVVTFAAL 451

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +A +N++SL+ G+Q    +   GLDS    + SL+D Y KCG
Sbjct: 452 TTAASNLASLQHGQQFHNHIIKTGLDSHPFTTNSLIDMYAKCG 494



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 222/446 (49%), Gaps = 73/446 (16%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR-----RNCFSWNAMIEGFMKLGHK-EKSLQLFNVMP- 99
           ++ MY + G   +ALL+F +  R      N +   ++I   +++G   +K +  F V   
Sbjct: 12  VVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACVQVGGSIDKQMHGFAVKSG 71

Query: 100 -QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
             +N +    L+  +AK G +  AR +F+ +  ++A+ W ++I   V+ G +  +++LF 
Sbjct: 72  FDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACVKRGRSEVSLQLFS 131

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
           ++       +  D +IL++V+GAC+ L  ++ GKQIH H+L  G++ D     S VN+  
Sbjct: 132 QMRET---NVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDV----SFVNV-- 182

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                                    LI  Y   GK+  AR++FD   D + + W +MI+G
Sbjct: 183 -------------------------LIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAG 217

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y+ N+ D EA+ LF +M R G   D     S+L++C SL  LE G+QVH ++ K  V  D
Sbjct: 218 YMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESD 277

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           + + + L+D Y+K G  +DA K+F ++ + + +  N +I  YS+  ++ +A ++FR M +
Sbjct: 278 IFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAMNLFREMRH 337

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
             L              SP                    +  S++ A A +S+LELG+Q+
Sbjct: 338 GML--------------SP-----------------SFLTFVSLLGASATLSALELGKQI 366

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKC 484
            A +T  G+  +    ++L+DFY KC
Sbjct: 367 HALITKFGISMEIFAGSALIDFYSKC 392



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 230/522 (44%), Gaps = 105/522 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C+    +  GKQ+H H L++GI    +   N L+  Y + G    A  LFD M
Sbjct: 145 LSSVLGACSQLEFVQGGKQIHGHVLRRGI-EIDVSFVNVLIDFYTKSGKVQSARKLFDGM 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
             RN  SW AMI G+M+     ++++LF  M                             
Sbjct: 204 ADRNVISWTAMIAGYMQNSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGR 263

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      + + F  N LI  +AK G L  AR +F+DM  RN +++N++I  Y    
Sbjct: 264 QVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLE 323

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF+E+   +   L        +++GA A L+ALE GKQIH+ I   G+  +  
Sbjct: 324 QLSEAMNLFREMRHGM---LSPSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIF 380

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GS+L++ Y                               + C  + DAR VFD+ T+  
Sbjct: 381 AGSALIDFY-------------------------------SKCSCLMDARLVFDKMTEKD 409

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+WN+M+ GY    E+ EAL L+ +++ +    +  T A++ +A S+L  L+HG+Q H 
Sbjct: 410 IVVWNAMLFGYTQQLENEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHN 469

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  K G+       ++L+D Y+K G   DA K F                     G ++D
Sbjct: 470 HIIKTGLDSHPFTTNSLIDMYAKCGSLEDARKAF---------------------GHVKD 508

Query: 389 AKHIFRTMPNKSLIS----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
             H F +MP  S+      +  ++  L ++G   EA +    + K+    +     S++S
Sbjct: 509 GLHYFESMPKFSIKPGTEHYACVVSLLGRSGKLYEAKEF---IEKMPTEPEAVVWRSLLS 565

Query: 445 ACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCG 485
           AC    ++ELG+  +A    I +DS D    T L + Y   G
Sbjct: 566 ACRVSGNVELGK--YAAEKAISIDSTDSGSYTLLSNIYASKG 605



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 33/220 (15%)

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           + W+S++S Y       EALL+F   +R      +   LASV+SAC  +G     KQ+HG
Sbjct: 7   ISWSSVVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACVQVGG-SIDKQMHG 65

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   +V V ++L+D Y+K                                G I++
Sbjct: 66  FAVKSGFDRNVYVGTSLVDLYAK-------------------------------GGNIDE 94

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  +  KS ++W ++I    + G    +L LF  M + ++  D + L+SV+ AC+ 
Sbjct: 95  ARLVFDGLLEKSAVTWTTIITACVKRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQ 154

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  ++ G+Q+   V   G++ D      L+DFY K G ++
Sbjct: 155 LEFVQGGKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQ 194


>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Vitis vinifera]
          Length = 670

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/476 (30%), Positives = 243/476 (51%), Gaps = 37/476 (7%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G + H H +K GI  ST+  +N+L+ +Y +                          
Sbjct: 3   SIKDGFRFHAHAIKNGI-TSTVFTSNQLIHLYSK-------------------------- 35

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            GF+   HK     LF+ MP++N F+WN +I  + K   LK AR LF+  P ++ + +NS
Sbjct: 36  HGFLAEAHK-----LFDEMPERNVFTWNAIIWAYIKTQNLKQARELFDSAPSKDLVTYNS 90

Query: 140 MIHCYVR-NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           M+  Y+  +G+   A++LF E+ S L +  + D F L  ++   A L+   YGKQ+HS++
Sbjct: 91  MLSGYINTDGYETNALKLFIEMQS-LNDETRIDEFSLTRMLNLSAKLSMESYGKQLHSYM 149

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDA 257
           +    +      SSL+++Y KCG F    QV +      D    +A+++     G++   
Sbjct: 150 VKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVLDLVSKNAMVAACCREGELEMG 209

Query: 258 RRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
             +F R  + + V+ WN++ISGY+ N  + +AL LF  M  N V  +  T+A +LSAC+ 
Sbjct: 210 VNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHTIAGLLSACAG 269

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           L  L+ GK+VHG   K  +  +  ++S L+D Y K G    A  +++ +   +   + +M
Sbjct: 270 LRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNAFSITSM 329

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMD 435
           I  +SS G + +A+ +F ++  KS I W ++  G  ++       +L      K  +  D
Sbjct: 330 IVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVPD 389

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              L SV+ ACA  ++L  G+Q+ A V  IG++ D+ + +++VD Y K G IK  E
Sbjct: 390 ALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKSGNIKYAE 445



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 227/466 (48%), Gaps = 69/466 (14%)

Query: 2   DTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           +TRID   L R+L           GKQLH + +K     S   +++ L+ MY +CG   +
Sbjct: 118 ETRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSS-LIDMYSKCGCFRE 176

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
              +FD      C        G + L  K                  N +++   + GEL
Sbjct: 177 VCQVFD-----GC-------AGVLDLVSK------------------NAMVAACCREGEL 206

Query: 120 KTARTLF-NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +    LF  D+   + ++WN++I  YV+NG   +A++LF  +  + V   + +   +A +
Sbjct: 207 EMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEV---RWNEHTIAGL 263

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + ACA L +L+ GK++H  +L   L F+  + S LV++Y KCG+   A  V   +   + 
Sbjct: 264 LSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNA 323

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-R 297
           F ++++I G+++ G M +ARR+FD  T+ SS++W ++ +GY+ + +      L  + R +
Sbjct: 324 FSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVK 383

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
             ++ DA  L SVL AC+    L  GKQ+H +  ++G+                      
Sbjct: 384 EAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGI---------------------- 421

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                 EL   D  L++ M+ +YS  G I+ A+ IF+ + N+  + +N M  G + +G  
Sbjct: 422 ------EL---DEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHE 472

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
            +A+  F  M +  +R D  +  +++SAC +   +ELGE+ FA +T
Sbjct: 473 NQAIQQFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMT 518



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 164/371 (44%), Gaps = 66/371 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C    S+ +GK++H   LK   L     I++ L+ +Y +CGN   A L++  +
Sbjct: 260 IAGLLSACAGLRSLKLGKEVHGWVLKYE-LGFNPFISSGLVDVYCKCGNMKYAELVYATI 318

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              N FS  +MI     +GH  +                          G +  AR LF+
Sbjct: 319 GTGNAFSITSMI-----VGHSSQ--------------------------GNMGEARRLFD 347

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  +++I W ++   YV++        L  E    + E +  DA IL +V+GACA  AA
Sbjct: 348 SLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFR--VKEAMVPDALILISVLGACAIQAA 405

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GKQIH+++L  G++ D  L S++V++                               
Sbjct: 406 LNPGKQIHAYVLRIGIELDEKLVSAMVDM------------------------------- 434

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+  G +  A ++F R T+  +V++N M +GY  +  + +A+  F +M   GV  DA T 
Sbjct: 435 YSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTF 494

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            ++LSAC   G +E G++         ++ ++   + ++D Y +      A      + +
Sbjct: 495 VALLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGRANQLEKAVAFMKRIPI 554

Query: 368 Y-DTILLNTMI 377
             D ++L   +
Sbjct: 555 EPDAVILGAFL 565


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/516 (27%), Positives = 230/516 (44%), Gaps = 107/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C     +  GK +H   L+ G   S++ + N L+ +Y +CG+   A L+F+ +  +
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQLLRTGSF-SSVYLTNSLVNLYAKCGSIVKAKLVFESITNK 74

Query: 71  NCFSWNAMIEGFMKLGHKEKS--LQLF------NVMPQKNDFSW---------------- 106
           +  SWN +I G+ + G    S  ++LF      N +P  + FS                 
Sbjct: 75  DVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQ 134

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            + LI+ + K G +  AR +F+ +P RN ++W ++I  Y     
Sbjct: 135 AHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERM 194

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           A EA  LF  +     E    D FI  +V+ A      + YGKQIH   L NGL   + +
Sbjct: 195 AFEAWELFXLMRR---EEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++LV +YGK                               CG ++DA + F+ + D   
Sbjct: 252 GNALVTMYGK-------------------------------CGCLDDALKTFELSGDKDD 280

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W++MI+GY    +  EAL LF+ M  NG      T   V++ACS +G LE GKQ+HG+
Sbjct: 281 ITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGY 340

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           + K G    +   +AL+D Y+K                               CG + DA
Sbjct: 341 SLKAGYECQIYFMTALVDMYAK-------------------------------CGSLVDA 369

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +  F  +    ++ W SMI G +QNG    AL L+C M    +   + ++ASV+ AC+++
Sbjct: 370 RKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSL 429

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++LE G+Q+ A+    G   +  I ++L   Y KCG
Sbjct: 430 AALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCG 465



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 188/451 (41%), Gaps = 110/451 (24%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H GKQ+H   LK G+L S   + N L+ MY +CG   DAL  F+    ++  +W+AMI 
Sbjct: 230 VHYGKQIHCLALKNGLL-SIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMIT 288

Query: 81  GFMKLGHKEKSLQLFNVMP----QKNDFSW------------------------------ 106
           G+ + G   ++L LF  M     + ++F++                              
Sbjct: 289 GYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYEC 348

Query: 107 -----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                  L+  +AK G L  AR  F+ +   + + W SMI  Y +NG    A+ L+  + 
Sbjct: 349 QIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQ 408

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
              +ER+      +A+V+ AC+ LAALE GKQIH+  +  G   +  +GS+L  +Y K  
Sbjct: 409 ---MERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAK-- 463

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                        CG + D   VF R      + WN+MISG   
Sbjct: 464 -----------------------------CGSLEDGNLVFRRMPSRDIMTWNAMISGLSQ 494

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK--------------QVH 327
           N E  +AL LF ++R      D  T  +VLSACS +G +E GK              +V 
Sbjct: 495 NGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVE 554

Query: 328 GHACKVGVIDDV--------IVASALLD--------------TYSKRGMPSDACKLFSEL 365
            +AC V ++            + SA +D               Y    + + A +   EL
Sbjct: 555 HYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMEL 614

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
              ++     + ++Y++ GR +D + + R M
Sbjct: 615 GSQESSAYILLSSIYTALGRSDDVERVRRLM 645



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 25/245 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C++  ++  GKQ+H   +K G  +  +PI + L  MY +CG+  D  L+F  M
Sbjct: 419 MASVLRACSSLAALEQGKQIHAQTIKYG-FSLEVPIGSALSTMYAKCGSLEDGNLVFRRM 477

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
           P R+  +WNAMI G  + G   K+L+LF  +     K D+ ++  ++S  +  G ++  +
Sbjct: 478 PSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGK 537

Query: 124 TLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             F  M       PR    A   M+    R G   E       + S  ++   C   IL 
Sbjct: 538 VYFRMMLDEFGIVPRVEHYA--CMVDILSRAGKLHETKEF---IESATIDHGMCLWRIL- 591

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDS--VLGSSLVNLYGKCGDFNSANQVLNMM- 233
             +GAC +    E G      ++  G    S  +L SS+    G+  D     +++ +  
Sbjct: 592 --LGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRG 649

Query: 234 --KEP 236
             KEP
Sbjct: 650 VNKEP 654


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 158/565 (27%), Positives = 250/565 (44%), Gaps = 118/565 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     + +LF ++
Sbjct: 72  GEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKL 131

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
             RN +SW A+I    ++G  E++L  F  M Q   F  N ++                 
Sbjct: 132 RVRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGR 191

Query: 111 --------SG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                   SG              + K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 192 GVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNG 251

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  ++  + +E  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 252 MNEEAIRLLSDMRKEGIEPTR---VTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNI 308

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S +N Y K G                                +  A  +FDR  +  
Sbjct: 309 LGTSNLNFYCKVG-------------------------------LIEYAEMIFDRMIEKD 337

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      +A+ +   MR   +  D  TL++++SA +    L+ GK+V  
Sbjct: 338 VVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQC 397

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  +     D+++AS  +D Y+  G   DA K+F  +   D IL NT+++VY+  G    
Sbjct: 398 YCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGE 457

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK IF  M      PN  L+SW +M
Sbjct: 458 AFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPN--LVSWTTM 515

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA+     M +  LR + FS+   +SAC+N++SL  G  V   +     
Sbjct: 516 MNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQ 575

Query: 468 DSDQI-ISTSLVDFYCKCGFIKMDE 491
            S  + I TSLVD Y KCG I   E
Sbjct: 576 HSSSVLIETSLVDMYAKCGDINKAE 600



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/525 (23%), Positives = 234/525 (44%), Gaps = 112/525 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L+  + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 179 KACGALQWSRFGRGVHGYVVKSG-LHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 237

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++L + M ++               S NM            
Sbjct: 238 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSHAI 297

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 298 AIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDA 357

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +    +E L+ D   L+T++ A A    L+ GK++  + + +    D VL S+ 
Sbjct: 358 IHMCQLMR---LENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDIVLASTA 414

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG--------------------- 252
           V++Y  CG    A +V + +   D    + L+S YA  G                     
Sbjct: 415 VDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNA 474

Query: 253 --------------KMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHK 294
                         ++N+A+ +F +   +    + V W +M++G + N    EA+L   K
Sbjct: 475 ITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEAILFLRK 534

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+ +G+  +A ++   LSACS+L  L  G+ VHG+  +    +    +S L++T      
Sbjct: 535 MQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIR----NQQHSSSVLIET------ 584

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                               +++ +Y+ CG I  A+ +FR+     L  +N+MI   + N
Sbjct: 585 --------------------SLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALN 624

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           G+  EA+ L   +    ++ D  +  S++SAC +   +    ++F
Sbjct: 625 GNVKEAIALCRRLEDTGIKPDNITFTSLLSACNHAGDVSQAVEIF 669



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G  REA+ L  E++     +L+    I   ++  C     L  GKQIH+ IL NG   
Sbjct: 45  KSGEIREALSLLTEMD---FRKLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG--- 98

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + N+ +           + L+  YA C     +  +F +  
Sbjct: 99  ----------------DFYAKNEYIE----------TKLVIFYAKCDAFEASEVLFSKLR 132

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I          EAL+ F +M +N +  D   + +V  AC +L +   G+ 
Sbjct: 133 VRNVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRG 192

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+ D V VAS+L D Y K                               CG 
Sbjct: 193 VHGYVVKSGLHDCVFVASSLADMYGK-------------------------------CGV 221

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++DA+ +F  +P +++++WN+++VG  QNG   EA+ L  +M K  +   + ++++ +SA
Sbjct: 222 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSA 281

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + GL+ D I+ TS ++FYCK G I+  E
Sbjct: 282 SANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAE 327



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 190/440 (43%), Gaps = 87/440 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +     ++ +GK++  + ++     S + +A+  + MY  CG+  DA  +FD +
Sbjct: 376 LSTLMSAAARTQNLKLGKEVQCYCIRHS-FASDIVLASTAVDMYANCGSIIDAKKVFDSV 434

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + + G   ++ +LF  M       N  +WN++I  F + G++  A+
Sbjct: 435 LAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAK 494

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F+ M       N ++W +M++  V+NG + EA+   +++       L+ +AF +   +
Sbjct: 495 EIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQES---GLRPNAFSITVAL 551

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVL-GSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            AC++LA+L +G+ +H +I+ N     SVL  +SLV++Y K                   
Sbjct: 552 SACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAK------------------- 592

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG +N A  VF     +   ++N+MIS Y  N    EA+ L  ++   
Sbjct: 593 ------------CGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRLEDT 640

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G+  D  T  S+LSAC+  G +    ++                    D  SK G+    
Sbjct: 641 GIKPDNITFTSLLSACNHAGDVSQAVEI------------------FTDMVSKHGI--KP 680

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C     L+ Y       M+ + +S G  + A  +   MP KS             +   I
Sbjct: 681 C-----LEHY-----GLMVDILASAGETDKALRLIEEMPYKS-------------DARMI 717

Query: 419 EALDLFCNMNKLDLRMDKFS 438
           ++L   CNM      MD  S
Sbjct: 718 QSLVASCNMKHKTELMDFLS 737



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 107/232 (46%), Gaps = 16/232 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   S+H G+ +H + ++    +S++ I   L+ MY +CG+   A ++F      +
Sbjct: 551 LSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSD 610

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
              +NAMI  +   G+ ++++ L   +     + ++ ++  L+S    AG++  A  +F 
Sbjct: 611 LPLYNAMISAYALNGNVKEAIALCRRLEDTGIKPDNITFTSLLSACNHAGDVSQAVEIFT 670

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           DM  ++ I      +  M+      G   +A+RL +E+        + DA ++ +++ +C
Sbjct: 671 DMVSKHGIKPCLEHYGLMVDILASAGETDKALRLIEEMP------YKSDARMIQSLVASC 724

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
                 E    +  H+L    + +S    ++ N Y   G ++   +   MMK
Sbjct: 725 NMKHKTELMDFLSRHLLETEPE-NSGNYVTISNAYAVEGSWDEVVKTREMMK 775



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 2/107 (1%)

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + +KH      + S  S+   +  LS++G   EAL L   M+   LR+       ++  C
Sbjct: 19  KPSKHHDAQAHSPSSASYFHRVSSLSKSGEIREALSLLTEMDFRKLRIGPEIYGEILQGC 78

Query: 447 ANISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
                L  G+Q+ AR+   G     ++ I T LV FY KC   +  E
Sbjct: 79  VYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASE 125


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 1430

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 249/521 (47%), Gaps = 78/521 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNST----LP--IANRLLQMYMRCGNPTDALL 62
           A LL+   +H S+   +++  H       +ST    +P  + NR ++    CG+  DA  
Sbjct: 47  ASLLRLATSHGSLSAARRIATHLAASSSASSTSRSSVPTFLFNRAIESLAACGSVADARE 106

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ---------------- 100
           LFD MP R+  SWNA+I    + GH  ++L LF+ M      P+                
Sbjct: 107 LFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLD 166

Query: 101 ------------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                       K DF  N+     L+  +     L  AR  F+D+   NAI+WN ++  
Sbjct: 167 LCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRR 226

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y   G    AV +F  + S  V  L    + ++  + AC D  ALE G+ IH+ +L +G 
Sbjct: 227 YHLAGMGDMAVDMFFRMLSAGVRPL---GYTVSHAVLACRDNNALEEGRCIHAFVLRHGY 283

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           +    + SS+V++Y KCG  ++A  + N+    D    ++++SG A+CG++ DA+RVF+ 
Sbjct: 284 EHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEG 343

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + V WN+M++GYI + + T ALLLF +MR+     DA TL SVLSAC+ +  +  G
Sbjct: 344 MKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKG 403

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           ++VH  A K G     I+ +AL+  YSK G                             C
Sbjct: 404 EEVHAFAIKCGFFSSPILKNALVRMYSKCG-----------------------------C 434

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
            R  +   +F     +   SWNS+I G  ++     AL     M   ++  ++ + +S +
Sbjct: 435 LRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSAL 493

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +ACANI  L+ G Q+ A +   G + D I+ + L+D YCKC
Sbjct: 494 AACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKC 534



 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 209/422 (49%), Gaps = 41/422 (9%)

Query: 73   FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
            F  N ++  + +LG    + ++F+ +P  N FS+N L+S  A+ G    AR LF+ +P  
Sbjct: 796  FLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDP 855

Query: 133  NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
            +  ++N++I    ++    +A+     +++D       +A+  A+ + ACA       G 
Sbjct: 856  DQCSYNAVIAALAQHSRGADALLFLAAMHAD---DFVLNAYSFASALSACAAEKDSRTGV 912

Query: 193  QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
            Q+H+ +  +    D  +GS+L+++Y K                               C 
Sbjct: 913  QVHALVSKSPHAKDVYIGSALLDMYAK-------------------------------CE 941

Query: 253  KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
               +ARRVF+   + + V WNS+I+ Y  N    EAL+LF  M + G + D  TLASV+S
Sbjct: 942  WPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMS 1001

Query: 313  ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            AC+ L     G+QVH    K     +D+++++AL+D Y+K G    A  +F  +     +
Sbjct: 1002 ACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVV 1061

Query: 372  LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
               ++IT Y+    +EDA+ +F  M  K++I+WN +I   +QNG   EAL LF  + +  
Sbjct: 1062 SETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRES 1121

Query: 432  LRMDKFSLASVISACANISSLELGEQVFARVTI------IGLDSDQIISTSLVDFYCKCG 485
            +    ++  +V++AC N++ L+LG+Q    V         G +SD  +  SLVD Y K G
Sbjct: 1122 VWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 1181

Query: 486  FI 487
             I
Sbjct: 1182 SI 1183



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 143/495 (28%), Positives = 219/495 (44%), Gaps = 83/495 (16%)

Query: 45   NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
            N LL  + R G P DA  LF  +P  +  S+NA+I    +      +L LF      +DF
Sbjct: 830  NALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADAL-LFLAAMHADDF 888

Query: 105  SWNM----------------------------------------LISGFAKAGELKTART 124
              N                                         L+  +AK    + AR 
Sbjct: 889  VLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARR 948

Query: 125  LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
            +F  MP RN ++WNS+I CY +NG   EA+ LF  +   +      D   LA+V+ ACA 
Sbjct: 949  VFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSM---MKAGFVPDEVTLASVMSACAG 1005

Query: 185  LAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            LAA   G+Q+H+ ++  +    D VL ++LV++Y KCG   +A  V + M        ++
Sbjct: 1006 LAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETS 1065

Query: 244  LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            LI+GYA    + DA+ VF +  + + + WN +I+ Y  N E+ EAL LF +++R  V   
Sbjct: 1066 LITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPT 1125

Query: 304  ASTLASVLSACSSLGFLEHGKQVHGHACK------VGVIDDVIVASALLDTYSKRGMPSD 357
              T  +VL+AC ++  L+ G+Q H H  K       G   DV V ++L+D Y K G   D
Sbjct: 1126 HYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDD 1185

Query: 358  ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
              K+F  +   D +  N MI  ++  GR +DA H+F  M              L    SP
Sbjct: 1186 GAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERM--------------LCSKESP 1231

Query: 418  IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTS 476
                             D  ++  V+SAC +   +E G + F  +T   G+   Q   T 
Sbjct: 1232 -----------------DSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTC 1274

Query: 477  LVDFYCKCGFIKMDE 491
            ++D   + G +K  E
Sbjct: 1275 MIDLLGRAGHLKEVE 1289



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 190/392 (48%), Gaps = 34/392 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F +N  I   A  G +  AR LF+ MP R+  +WN++I    R G   EA+ LF  +NS 
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS- 144

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L  R + DA  +A+V+  CA+   L   +Q+H HI       + +LG++LV++YG     
Sbjct: 145 LGIRPK-DA-TMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYG----- 197

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                     NC  + DARR FD   + +++ WN ++  Y    
Sbjct: 198 --------------------------NCFLLADARRAFDDILEPNAISWNVIVRRYHLAG 231

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
               A+ +F +M   GV     T++  + AC     LE G+ +H    + G    V V S
Sbjct: 232 MGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRS 291

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +++D Y+K G    A  LF+   + D ++  ++++  +SCGRI DAK +F  M  ++L+S
Sbjct: 292 SVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVS 351

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+M+ G  ++     AL LF  M +     D  +L SV+SAC  I  +  GE+V A   
Sbjct: 352 WNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAI 411

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
             G  S  I+  +LV  Y KCG ++  E  L+
Sbjct: 412 KCGFFSSPILKNALVRMYSKCGCLRSAERLLL 443



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 176/384 (45%), Gaps = 64/384 (16%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           +++++ + K G  + +  LFN+ P K+      ++SG A  G +  A+ +F  M  RN +
Sbjct: 291 SSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLV 350

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+M+  Y+R+     A+ LF+++     E  + DA  L +V+ AC  +  +  G+++H
Sbjct: 351 SWNAMLTGYIRSMDLTGALLLFQQMRQ---ETREFDAITLGSVLSACTGILDIGKGEEVH 407

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  +  G     +L ++LV +Y KCG   SA ++L                         
Sbjct: 408 AFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLL------------------------- 442

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
               +F+  ++  S  WNS+ISGY  ++    AL    KM+   V  + ST +S L+AC+
Sbjct: 443 ----LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACA 497

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           ++  L+ G Q+H +  + G   D I+ S L+D Y         CK               
Sbjct: 498 NIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMY---------CK--------------- 533

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  C + + +  IF   P++ +I WNSMI G + +G     LDLF  M K  ++ D
Sbjct: 534 -------CRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKAD 586

Query: 436 KFSLASVISACANISSLELGEQVF 459
             +    + +C +   + LG   F
Sbjct: 587 SVTFLGALVSCISEGHVRLGRSYF 610



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 32/281 (11%)

Query: 206  DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
            ++ L ++LV+ Y + G    A +V + +  P+ F  +AL+S +A  G+  DAR +F    
Sbjct: 794  ETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIP 853

Query: 266  DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            D     +N++I+    ++   +ALL    M  +  + +A + AS LSAC++      G Q
Sbjct: 854  DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQ 913

Query: 326  VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            VH    K     DV + SALLD Y+K   P +A ++F  +   + +  N++IT Y     
Sbjct: 914  VHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCY----- 968

Query: 386  IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                                       QNG   EAL LF +M K     D+ +LASV+SA
Sbjct: 969  --------------------------EQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSA 1002

Query: 446  CANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCG 485
            CA +++   G QV ARV        D ++S +LVD Y KCG
Sbjct: 1003 CAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCG 1043



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 139/324 (42%), Gaps = 71/324 (21%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA ++ +C    +   G+Q+H   +K       + ++N L+ MY +CG    A  +FD M
Sbjct: 996  LASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRM 1055

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              R+  S  ++I G+ +  + E +  +F+ M +KN  +WN+LI+ +A+            
Sbjct: 1056 ASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQ------------ 1103

Query: 128  DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                               NG   EA+RLF  L  + V       +    V+ AC ++A 
Sbjct: 1104 -------------------NGEEEEALRLFVRLKRESVWPTH---YTYGNVLNACGNVAD 1141

Query: 188  LEYGKQIHSHILVNGLDF------DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
            L+ G+Q H H+L  G  F      D  +G+SLV++Y K G  +   +V   M   D+   
Sbjct: 1142 LQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSW 1201

Query: 242  SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
            +A+I G+A  G+  D                               AL LF +M  +   
Sbjct: 1202 NAMIVGHAQNGRAKD-------------------------------ALHLFERMLCSKES 1230

Query: 302  EDASTLASVLSACSSLGFLEHGKQ 325
             D+ T+  VLSAC   G +E G++
Sbjct: 1231 PDSVTMIGVLSACGHSGLVEEGRR 1254



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 76/312 (24%)

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---------- 103
           CG   DA  +F+ M  RN  SWNAM+ G+++      +L LF  M Q+            
Sbjct: 331 CGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSV 390

Query: 104 -------------------------FS----WNMLISGFAKAGELKTARTL--FNDMPRR 132
                                    FS     N L+  ++K G L++A  L  F     R
Sbjct: 391 LSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSER 450

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++ +WNS+I  Y R+  +  A+    ++ S++      +    ++ + ACA++  L+ G 
Sbjct: 451 DSYSWNSLISGYERHSMSEAALYALTKMQSEVTP----NQSTFSSALAACANIFLLKQGM 506

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH++++  G + D +L S L+++                               Y  C 
Sbjct: 507 QIHAYMIRKGYEIDDILRSVLIDM-------------------------------YCKCR 535

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           + + + R+F+       ++WNSMI G   + +    L LF +M++ G+  D+ T    L 
Sbjct: 536 QFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALV 595

Query: 313 ACSSLGFLEHGK 324
           +C S G +  G+
Sbjct: 596 SCISEGHVRLGR 607



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/433 (21%), Positives = 181/433 (41%), Gaps = 41/433 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           + +I+ + K    + S+++F   P ++   WN +I G A +G+ +    LF++M ++   
Sbjct: 525 SVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIK 584

Query: 136 A-----WNSMIHCYVRNGFAREAVRLFKELNSD----LVERLQCDAFILATVIGACADLA 186
           A       +++ C +  G  R     F  +  +     +E  +C   +L           
Sbjct: 585 ADSVTFLGALVSC-ISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLG---------- 633

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS------ANQVLNMMKEPDDFC 240
             ++G  +     V  + F+      L  ++  C ++ +      A + +N         
Sbjct: 634 --KHGCMVELEDFVEHMPFEPTTAMWL-RIFDCCREYGNRKLGERAAKCINDSNPLTPVQ 690

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM---ISGYISNNEDTEALLLFHKMRR 297
             A +   +N G        F    +    +  S+    SG +     T  L +++ M R
Sbjct: 691 FVATVDYESNDGGREAESTSFSSEGEGCEELPFSLEGEASGSLPAPLTTRPLAIWYGMAR 750

Query: 298 NGV------LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           +        L  ++ LA +L +  +L      +  H  A K   + +  + + L+  Y++
Sbjct: 751 HHHHHFVSHLRASAPLADLLRSAPNL---PAARAAHARALKSPFVAETFLLNTLVSAYAR 807

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G   DA ++F E+   +T   N +++ ++  GR  DA+ +F  +P+    S+N++I  L
Sbjct: 808 LGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAAL 867

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +Q+    +AL     M+  D  ++ +S AS +SACA       G QV A V+      D 
Sbjct: 868 AQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDV 927

Query: 472 IISTSLVDFYCKC 484
            I ++L+D Y KC
Sbjct: 928 YIGSALLDMYAKC 940


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 240/517 (46%), Gaps = 105/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G++L+   LK G  ++ L +   L+ M+++CG+  DA  +FD +P R
Sbjct: 217 MLNACADARNVDKGRELYNLILKAG-WDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR 275

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDF-------------------- 104
           +  +W +MI G  + G  +++  LF       V P K  F                    
Sbjct: 276 DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVH 335

Query: 105 ------SWNM-------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                  W+        ++S + K G ++ A  +F+ +  RN ++W +MI  + ++G   
Sbjct: 336 ARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID 395

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA   F ++    +E    +     +++GAC+  +AL+ G+QI  HI+  G         
Sbjct: 396 EAFLFFNKMIESGIEP---NRVTFMSILGACSSPSALKRGQQIQDHIIEAG--------- 443

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                YG                  DD   +AL+S YA CG + DA RVF++ +  + V 
Sbjct: 444 -----YGS-----------------DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI+ Y+ + +   AL  F  + + G+  ++ST  S+L+ C S   LE GK VH    
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  D+ V++AL                               ++++ +CG +  AK+
Sbjct: 542 KAGLESDLHVSNAL-------------------------------VSMFVNCGDLMSAKN 570

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  MP + L+SWN++I G  Q+G    A D F  M +  ++ DK +   +++ACA+  +
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           L  G ++ A +T    D D ++ T L+  Y KCG I+
Sbjct: 631 LTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIE 667



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 125/516 (24%), Positives = 220/516 (42%), Gaps = 105/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++CN   ++  GK++H    + G  ++ + +   +L MY +CG+  DAL +FD +  R
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVG-WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR 376

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK----------------------- 101
           N  SW AMI GF + G  +++   FN M      P +                       
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     +D     L+S +AK G LK A  +F  + ++N +AWN+MI  YV++    
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYD 496

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+  F+ L   L E ++ ++    +++  C    +LE GK +H  I+  GL        
Sbjct: 497 NALATFQAL---LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGL-------- 545

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                  E D    +AL+S + NCG +  A+ +F+       V 
Sbjct: 546 -----------------------ESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVS 582

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++I+G++ + ++  A   F  M+ +G+  D  T   +L+AC+S   L  G+++H    
Sbjct: 583 WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALIT 642

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +     DV+V + L+  Y+K G   DA ++F +L   +     +MI  Y+          
Sbjct: 643 EAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYA---------- 692

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                Q+G   EAL+LF  M +  ++ D  +    +SACA+   
Sbjct: 693 ---------------------QHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +E G   F  +    ++        +VD + + G +
Sbjct: 732 IEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL 767



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 160/348 (45%), Gaps = 65/348 (18%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N++++   + G   EA+++ + ++S     +Q      + ++  C     L  G++I++H
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSS---HIQIYRQTYSALLQLCIKFKNLGDGERIYNH 135

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           I  +G+  D  + ++L+N+Y KCG+  SA Q+ + M+E D +  + L+ GY   G     
Sbjct: 136 IKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE-- 193

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
                                        EA  L  +M ++ V  D  T  S+L+AC+  
Sbjct: 194 -----------------------------EAFKLHEQMVQDSVKPDKRTFVSMLNACADA 224

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             ++ G++++    K G   D+ V +AL++ + K G   DA K+F  L   D +   +MI
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMI 284

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           T                               GL+++G   +A +LF  M +  ++ DK 
Sbjct: 285 T-------------------------------GLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  S++ AC +  +LE G++V AR+  +G D++  + T+++  Y KCG
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG 361



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 33/228 (14%)

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF    DT     N++++      +  EA+ +  ++  + +     T +++L  C     
Sbjct: 68  VFADIKDTQKA--NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G++++ H  K GV  D+                                + NT+I +
Sbjct: 126 LGDGERIYNHIKKSGVQPDIF-------------------------------MRNTLINM 154

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+ CG    AK IF  M  K + SWN ++ G  Q+G   EA  L   M +  ++ DK + 
Sbjct: 155 YAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF 214

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            S+++ACA+  +++ G +++  +   G D+D  + T+L++ + KCG I
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDI 262


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 240/517 (46%), Gaps = 105/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G++L+   LK G  ++ L +   L+ M+++CG+  DA  +FD +P R
Sbjct: 217 MLNACADARNVDKGRELYNLILKAG-WDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR 275

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDF-------------------- 104
           +  +W +MI G  + G  +++  LF       V P K  F                    
Sbjct: 276 DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVH 335

Query: 105 ------SWNM-------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                  W+        ++S + K G ++ A  +F+ +  RN ++W +MI  + ++G   
Sbjct: 336 ARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID 395

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA   F ++    +E    +     +++GAC+  +AL+ G+QI  HI+  G         
Sbjct: 396 EAFLFFNKMIESGIEP---NRVTFMSILGACSSPSALKRGQQIQDHIIEAG--------- 443

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                YG                  DD   +AL+S YA CG + DA RVF++ +  + V 
Sbjct: 444 -----YGS-----------------DDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI+ Y+ + +   AL  F  + + G+  ++ST  S+L+ C S   LE GK VH    
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  D+ V++AL                               ++++ +CG +  AK+
Sbjct: 542 KAGLESDLHVSNAL-------------------------------VSMFVNCGDLMSAKN 570

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  MP + L+SWN++I G  Q+G    A D F  M +  ++ DK +   +++ACA+  +
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           L  G ++ A +T    D D ++ T L+  Y KCG I+
Sbjct: 631 LTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIE 667



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/516 (24%), Positives = 223/516 (43%), Gaps = 105/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++CN   ++  GK++H    + G  ++ + +   +L MY +CG+  DAL +FD +  R
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVG-WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR 376

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK----------------------- 101
           N  SW AMI GF + G  +++   FN M      P +                       
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     +D     L+S +AK G LK A  +F  + ++N +AWN+MI  YV++    
Sbjct: 437 DHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYD 496

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+  F+ L   L E ++ ++    +++  C    +LE GK +H  I+  GL+       
Sbjct: 497 NALATFQAL---LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE------- 546

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                     D + +N               AL+S + NCG +  A+ +F+       V 
Sbjct: 547 ---------SDLHVSN---------------ALVSMFVNCGDLMSAKNLFNDMPKRDLVS 582

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++I+G++ + ++  A   F  M+ +G+  D  T   +L+AC+S   L  G+++H    
Sbjct: 583 WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALIT 642

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +     DV+V + L+  Y+K G   DA ++F +L   +     +MIT Y+          
Sbjct: 643 EAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYA---------- 692

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                Q+G   EAL+LF  M +  ++ D  +    +SACA+   
Sbjct: 693 ---------------------QHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +E G   F  +    ++        +VD + + G +
Sbjct: 732 IEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLL 767



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 160/348 (45%), Gaps = 65/348 (18%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N++++   + G   EA+++ + ++S     +Q      + ++  C     L  G++I++H
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSS---HIQIYRQTYSALLQLCIKFKNLGDGERIYNH 135

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           I  +G+  D  + ++L+N+Y KCG+  SA Q+ + M+E D +  + L+ GY   G     
Sbjct: 136 IKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE-- 193

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
                                        EA  L  +M ++ V  D  T  S+L+AC+  
Sbjct: 194 -----------------------------EAFKLHEQMVQDSVKPDKRTFVSMLNACADA 224

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             ++ G++++    K G   D+ V +AL++ + K G   DA K+F  L   D +   +MI
Sbjct: 225 RNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMI 284

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           T                               GL+++G   +A +LF  M +  ++ DK 
Sbjct: 285 T-------------------------------GLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  S++ AC +  +LE G++V AR+  +G D++  + T+++  Y KCG
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCG 361



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 103/228 (45%), Gaps = 33/228 (14%)

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF    DT     N++++      +  EA+ +  ++  + +     T +++L  C     
Sbjct: 68  VFADIKDTQKA--NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G++++ H  K GV  D+                                + NT+I +
Sbjct: 126 LGDGERIYNHIKKSGVQPDIF-------------------------------MWNTLINM 154

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+ CG    AK IF  M  K + SWN ++ G  Q+G   EA  L   M +  ++ DK + 
Sbjct: 155 YAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF 214

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            S+++ACA+  +++ G +++  +   G D+D  + T+L++ + KCG I
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDI 262


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 236/522 (45%), Gaps = 109/522 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C     +  G QLH   ++ G  +  + +   L+  Y + GN  +A L+FD++
Sbjct: 132 LASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 190

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS---------------- 105
             +   +W  +I G+ K G    SL+LF      NV+P +   S                
Sbjct: 191 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 250

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N+LI  + K   +K  R LF+ M  +N I+W +MI  Y++N 
Sbjct: 251 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 310

Query: 149 FAREAVRLFKELNSDLVERL--QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           F  EA++LF E+N     RL  + D F   +V+ +C    ALE G+Q+H++ +   L   
Sbjct: 311 FDWEAMKLFGEMN-----RLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANL--- 362

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                       E D+F  + LI  YA    + DA++VFD   +
Sbjct: 363 ----------------------------ESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 394

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + + +N+MI GY S  + +EAL LFH+MR         T  S+L   +SL  LE  KQ+
Sbjct: 395 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI 454

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG   K GV  D+   SAL+D YSK     DA  +F E+   D ++              
Sbjct: 455 HGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVV-------------- 500

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                            WN+M  G +Q+    EAL L+  +     + ++F+ A++I+A 
Sbjct: 501 -----------------WNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAA 543

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +N++SL  G+Q   ++  +GLD    ++ +LVD Y KCG I+
Sbjct: 544 SNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIE 585



 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 193/388 (49%), Gaps = 64/388 (16%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q + F  N+LI+  +K+  +  AR +F+ MP +N I W+SM+  Y + G++ EA+ +F +
Sbjct: 59  QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 118

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           L     E    + F+LA+VI AC  L  +E G Q+H  ++ +G D D  +G+SL++ Y K
Sbjct: 119 LQRKSGE--HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSK 176

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
            G+                               + +AR VFD+ ++ ++V W ++I+GY
Sbjct: 177 NGN-------------------------------IEEARLVFDQLSEKTAVTWTTIIAGY 205

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
                   +L LF +MR   V+ D   ++SVLSACS L FLE GKQ+H +  + G   DV
Sbjct: 206 TKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDV 265

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V                               +N +I  Y+ C R++  + +F  M  K
Sbjct: 266 SV-------------------------------VNVLIDFYTKCNRVKAGRKLFDQMVVK 294

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           ++ISW +MI G  QN    EA+ LF  MN+L  + D F+  SV+++C +  +LE G QV 
Sbjct: 295 NIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVH 354

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           A      L+SD+ +   L+D Y K   +
Sbjct: 355 AYTIKANLESDEFVKNGLIDMYAKSNLL 382



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 130/528 (24%), Positives = 234/528 (44%), Gaps = 81/528 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C+    +  GKQ+H + L++G     + + N L+  Y +C        LFD+M
Sbjct: 233 VSSVLSACSMLEFLEGGKQIHAYVLRRGT-EMDVSVVNVLIDFYTKCNRVKAGRKLFDQM 291

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------P---------------------- 99
             +N  SW  MI G+M+     ++++LF  M      P                      
Sbjct: 292 VVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGR 351

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      + ++F  N LI  +AK+  L  A+ +F+ M  +N I++N+MI  Y    
Sbjct: 352 QVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQE 411

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF E+    V           +++G  A L ALE  KQIH  I+  G+  D  
Sbjct: 412 KLSEALELFHEMR---VRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLF 468

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GS+L+++                               Y+ C  + DAR VF+   +  
Sbjct: 469 AGSALIDV-------------------------------YSKCSYVKDARHVFEEMNEKD 497

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+WN+M  GY  + E+ EAL L+  ++ +    +  T A++++A S+L  L HG+Q H 
Sbjct: 498 IVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHN 557

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K+G+     V +AL+D Y+K G   +A K+F+     D +  N+MI+ ++  G  E+
Sbjct: 558 QLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEE 617

Query: 389 AKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
           A  +FR M  + +    +++ +++   S  G   + L+ F +M    ++      A V+S
Sbjct: 618 ALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVS 677

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
                  L   ++   ++ I   +   I+  SL+      G +++ +Y
Sbjct: 678 LLGRSGKLFEAKEFIEKMPI---EPAAIVWRSLLSACRIAGNVELGKY 722



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 143/298 (47%), Gaps = 63/298 (21%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K IH  I+V+GL  D+ L + L+N+  K                                
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSD------------------------------ 76

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASV 310
            ++++AR VFD+    + + W+SM+S Y       EAL++F  + R++G   +   LASV
Sbjct: 77  -RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASV 135

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           + AC+ LG +E G Q+HG   + G   DV V ++L+D YSK G                 
Sbjct: 136 IRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG----------------- 178

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                          IE+A+ +F  +  K+ ++W ++I G ++ G    +L+LF  M + 
Sbjct: 179 --------------NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRET 224

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++  D++ ++SV+SAC+ +  LE G+Q+ A V   G + D  +   L+DFY KC  +K
Sbjct: 225 NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 282


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/415 (32%), Positives = 229/415 (55%), Gaps = 6/415 (1%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++  + K G+   + +LF+ MP +  FSWN ++S ++K G++ +    F+ +P+R+++
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W +MI  Y   G   +A+R+  ++  + +E  Q   F L  V+ + A    +E GK++H
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ---FTLTNVLASVAATRCMETGKKVH 169

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           S I+  GL  +  + +SL+N+Y KCGD   A  V + M   D    +A+I+ +   G+M+
Sbjct: 170 SFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMD 229

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 314
            A   F++  +   V WNSMISG+     D  AL +F KM R+ +L  D  TLASVLSAC
Sbjct: 230 LAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSAC 289

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-- 372
           ++L  L  GKQ+H H    G     IV +AL+  YS+ G    A +L  +    D  +  
Sbjct: 290 ANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              ++  Y   G +  AK+IF ++ ++ +++W +MIVG  Q+GS  EA++LF +M     
Sbjct: 350 FTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ 409

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           R + ++LA+++S  ++++SL  G+Q+       G      +S +L+  Y K G I
Sbjct: 410 RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 227/495 (45%), Gaps = 77/495 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L S      +  GK++H   +K G L   + ++N LL MY +CG+P  A  +FD M
Sbjct: 149 LTNVLASVAATRCMETGKKVHSFIVKLG-LRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM 207

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW                               N +I+   + G++  A   F 
Sbjct: 208 VVRDISSW-------------------------------NAMIALHMQVGQMDLAMAQFE 236

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  R+ + WNSMI  + + G+   A+ +F ++  D +  L  D F LA+V+ ACA+L  
Sbjct: 237 QMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL--LSPDRFTLASVLSACANLEK 294

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC--LSALI 245
           L  GKQIHSHI+  G D   ++ ++L+++Y +CG   +A +++      D      +AL+
Sbjct: 295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G MN A+ +F    D   V W +MI GY  +    EA+ LF  M   G   ++ 
Sbjct: 355 DGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLA++LS  SSL  L HGKQ+HG A K G I  V V++AL+  Y+K G  + A + F  +
Sbjct: 415 TLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLI 474

Query: 366 KV-YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   DT+   +MI   +  G  E                               EAL+LF
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAE-------------------------------EALELF 503

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVD 479
             M    LR D  +   V SAC +   +  G Q F  +     D D+II T      +VD
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK----DVDKIIPTLSHYACMVD 559

Query: 480 FYCKCGFIKMDEYYL 494
            + + G ++  + ++
Sbjct: 560 LFGRAGLLQEAQEFI 574



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 164/296 (55%), Gaps = 1/296 (0%)

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +H  ++ +GL F   L ++L+N+Y K G    A ++ + M     F  + ++S Y+  G 
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           M+     FD+     SV W +MI GY +  +  +A+ +   M + G+     TL +VL++
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            ++   +E GK+VH    K+G+  +V V+++LL+ Y+K G P  A  +F  + V D    
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-L 432
           N MI ++   G+++ A   F  M  + +++WNSMI G +Q G  + ALD+F  M +   L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             D+F+LASV+SACAN+  L +G+Q+ + +   G D   I+  +L+  Y +CG ++
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVE 331



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 18/222 (8%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
           GKQ+H   +K G + S + ++N L+ MY + GN T A   FD +   R+  SW +MI   
Sbjct: 432 GKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIAL 490

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-- 136
            + GH E++L+LF  M     + +  ++  + S    AG +   R  F+ M   + I   
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPT 550

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              +  M+  + R G  +EA    +++       ++ D     +++ AC     ++ GK 
Sbjct: 551 LSHYACMVDLFGRAGLLQEAQEFIEKMP------IEPDVVTWGSLLSACRVHKNIDLGKV 604

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
               +L+   + +S   S+L NLY  CG +  A ++   MK+
Sbjct: 605 AAERLLLLEPE-NSGAYSALANLYSACGKWEEAAKIRKSMKD 645


>gi|356507622|ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Glycine max]
          Length = 698

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 241/516 (46%), Gaps = 75/516 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   + C++H ++   +++  H L     N    + NR ++ Y +C    DA  LFDEMP
Sbjct: 66  ALFFRLCSSHRAVVEARKVESHLLTFSP-NPPTFLLNRAIEAYAKCHCLRDARELFDEMP 124

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-------------------- 108
           + +  SWNA+I  + +LG   ++  LF  M +   F   +                    
Sbjct: 125 QPDGGSWNALITAYSQLGFPNETFSLFLCMTRSGFFPTEVTFASVLASCAASSELLLSKQ 184

Query: 109 -------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                              L+  + K G +  AR +F+++P+ NA+ WN ++  Y+  G 
Sbjct: 185 VHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFHEIPQPNAVTWNVIVRRYLDAGD 244

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           A+EAV +F  + S    R     F  +  + AC+ ++AL  G QIH  ++  GL  D+V+
Sbjct: 245 AKEAVFMFSRMFSTSAVRPM--NFTFSNALVACSSVSALREGVQIHGVVVKLGLREDNVV 302

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            SSLVN+Y KCG      QV + +   D  C ++++SGYA  GK  +AR  FD   + + 
Sbjct: 303 SSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPERNV 362

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + WN+M++GY   +E ++AL   + M       D  TL  +L+  + +   E GKQVHG+
Sbjct: 363 ISWNAMLAGYTQCSEWSKALDFVYLMLDVIKDVDHVTLGLLLNVSAGISDHEMGKQVHGY 422

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G   D+ +++ALLD Y K                               CG +   
Sbjct: 423 IYRHGFHSDLRLSNALLDMYGK-------------------------------CGNLNST 451

Query: 390 KHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +  F  M ++   +SWN+++    Q+    +AL +F  M + + +  +++  +++ ACAN
Sbjct: 452 RVWFNQMSDRRDRVSWNALLASYGQHQLSEQALTMFSKM-QWETKPTQYTFVTLLLACAN 510

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             +L LG+Q+   +   G   D +  T+LV  YCKC
Sbjct: 511 TFTLCLGKQIHGFMIRHGFHIDTVTRTALVYMYCKC 546



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 220/466 (47%), Gaps = 49/466 (10%)

Query: 32  LKKGILNSTLPIANRLLQM---YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
           LK    + T P  N ++     Y++ G    A  +    P+   FS  A+   F +L   
Sbjct: 18  LKPHPHSQTQPATNAVINTILTYLKAGRIRKATSILFAFPKPFPFSLYAL---FFRLCSS 74

Query: 89  EKSL--------QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
            +++         L    P    F  N  I  +AK   L+ AR LF++MP+ +  +WN++
Sbjct: 75  HRAVVEARKVESHLLTFSPNPPTFLLNRAIEAYAKCHCLRDARELFDEMPQPDGGSWNAL 134

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  Y + GF  E   LF  +        +      A+V+ +CA  + L   KQ+H  +  
Sbjct: 135 ITAYSQLGFPNETFSLFLCMTRSGFFPTEVT---FASVLASCAASSELLLSKQVHGLVTK 191

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            G   + +LGSSLV++YGK                               CG M DARR+
Sbjct: 192 FGFCGNVILGSSLVDVYGK-------------------------------CGVMADARRM 220

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGF 319
           F      ++V WN ++  Y+   +  EA+ +F +M     +   + T ++ L ACSS+  
Sbjct: 221 FHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACSSVSA 280

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G Q+HG   K+G+ +D +V+S+L++ Y K G   D  ++F +L   D +   ++++ 
Sbjct: 281 LREGVQIHGVVVKLGLREDNVVSSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSG 340

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+  G+  +A+  F  MP +++ISWN+M+ G +Q     +ALD    M  +   +D  +L
Sbjct: 341 YAMSGKTLEAREFFDEMPERNVISWNAMLAGYTQCSEWSKALDFVYLMLDVIKDVDHVTL 400

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             +++  A IS  E+G+QV   +   G  SD  +S +L+D Y KCG
Sbjct: 401 GLLLNVSAGISDHEMGKQVHGYIYRHGFHSDLRLSNALLDMYGKCG 446



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 174/384 (45%), Gaps = 65/384 (16%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           ++++  ++K G  E   Q+F+ +  ++   W  ++SG+A +G+   AR  F++MP RN I
Sbjct: 304 SSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPERNVI 363

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+M+  Y +     +A+  F  L  D+++ +  D   L  ++   A ++  E GKQ+H
Sbjct: 364 SWNAMLAGYTQCSEWSKALD-FVYLMLDVIKDV--DHVTLGLLLNVSAGISDHEMGKQVH 420

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            +I  +G   D  L ++L+++YGKCG+ NS     N                     +M+
Sbjct: 421 GYIYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFN---------------------QMS 459

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           D R   DR      V WN++++ Y  +    +AL +F KM+         T  ++L AC+
Sbjct: 460 DRR---DR------VSWNALLASYGQHQLSEQALTMFSKMQWE-TKPTQYTFVTLLLACA 509

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +   L  GKQ+HG   + G   D +  +AL+  Y K                        
Sbjct: 510 NTFTLCLGKQIHGFMIRHGFHIDTVTRTALVYMYCK------------------------ 545

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  C  +E A  + +   ++ +I WN++I+G   N    EAL+LF  M    ++ D
Sbjct: 546 -------CRCLEYAIEVLKRAVSRDVIIWNTIIMGCVHNHKGKEALELFVIMEAEGIKPD 598

Query: 436 KFSLASVISACANISSLELGEQVF 459
             +   ++ AC     +E G   F
Sbjct: 599 HVTFKGILLACIEEGLVEFGTGCF 622



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 43/208 (20%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEG 81
           +GKQ+H +  + G  +S L ++N LL MY +CGN     + F++M  RR+  SWNA++  
Sbjct: 415 MGKQVHGYIYRHG-FHSDLRLSNALLDMYGKCGNLNSTRVWFNQMSDRRDRVSWNALLAS 473

Query: 82  FMKLGHKEKSLQLFNVM-----PQKNDF-------------------------------- 104
           + +    E++L +F+ M     P +  F                                
Sbjct: 474 YGQHQLSEQALTMFSKMQWETKPTQYTFVTLLLACANTFTLCLGKQIHGFMIRHGFHIDT 533

Query: 105 -SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            +   L+  + K   L+ A  +      R+ I WN++I   V N   +EA+ LF  + + 
Sbjct: 534 VTRTALVYMYCKCRCLEYAIEVLKRAVSRDVIIWNTIIMGCVHNHKGKEALELFVIMEA- 592

Query: 164 LVERLQCDAFILATVIGACADLAALEYG 191
             E ++ D      ++ AC +   +E+G
Sbjct: 593 --EGIKPDHVTFKGILLACIEEGLVEFG 618


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 154/561 (27%), Positives = 256/561 (45%), Gaps = 85/561 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + +LQS N   S+ +GKQLH H +K G  N    +  +LLQMY    +  DA  +FD+M 
Sbjct: 38  STILQSSN---SLTLGKQLHSHSIKTGFYNHNF-VQTKLLQMYSINSSFEDAWHMFDKMT 93

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFN--------------VMPQ-------------- 100
            +N  SW A++   + +G   K   LF               V P               
Sbjct: 94  LKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELG 153

Query: 101 -------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                         N +  N LI  + K G L  A+ +   M +++ ++WNS+I   V N
Sbjct: 154 RQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVAN 213

Query: 148 GFAREAVRLFKEL---------------------NSDLVERLQC-----------DAFIL 175
           G   EA+ L + +                     N+  VE ++            DA  L
Sbjct: 214 GVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTL 273

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A+V+ AC+ +  L  GK++H +I+ + L  +  + ++LV +Y +CGD  SA ++ +    
Sbjct: 274 ASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFAR 333

Query: 236 PDDFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLL 291
                 + +I GY   G +  A+ +F        +   + WN MISG++ N    +AL+L
Sbjct: 334 KCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALML 393

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  +   G+  D+ TL S+L+  + +  +  GK++H  A   G+  +  V  AL++ Y K
Sbjct: 394 FRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCK 453

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSM 407
                 A   F E+   DT   N +I+ Y+ C +I   + +   M +     ++ +WNS+
Sbjct: 454 CNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSI 513

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL +N     A+ LF  M    LR D +++  +++AC+ ++++  G+QV A     G 
Sbjct: 514 LAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGY 573

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
           DSD  I  +LVD Y KCG IK
Sbjct: 574 DSDAHIGATLVDMYAKCGSIK 594



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 239/494 (48%), Gaps = 76/494 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+    + VGK+LH + ++  + ++   +AN L+ MY RCG+   A  +F + 
Sbjct: 273 LASVLPACSRMKWLFVGKELHGYIVRHELFSNGF-VANALVGMYRRCGDMKSAFKIFSKF 331

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
            R+   S+N MI G+++ G+  K+ +LF  M Q    ++  SWN +ISG           
Sbjct: 332 ARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISG----------- 380

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
                               +V N    +A+ LF++L   L+E ++ D+F L +++   A
Sbjct: 381 --------------------HVDNFMFDDALMLFRDL---LMEGIEPDSFTLGSILTGFA 417

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           D+  +  GK+IHS  +V GL  +S +G +LV +Y KC D  +A    + + E D    +A
Sbjct: 418 DMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNA 477

Query: 244 LISGYANCGKMNDARRVFDRTT----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
           LISGYA C ++   R + +R      + +   WNS+++G + N +   A+ LF++M+ + 
Sbjct: 478 LISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSS 537

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D  T+  +L+ACS L  +  GKQVH ++ + G   D  + + L+D Y+K        
Sbjct: 538 LRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAK-------- 589

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                                  CG I+    ++  + N +L+  N+M+   + +G   E
Sbjct: 590 -----------------------CGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEE 626

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
            + +F  M    +R D  +  SV+S+C +  S+++G + F  +    +       T +VD
Sbjct: 627 GIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLMETYNITPTLKHYTCMVD 686

Query: 480 FYCKCGFIKMDEYY 493
              + G  K+DE Y
Sbjct: 687 LLSRAG--KLDEAY 698



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 170/395 (43%), Gaps = 102/395 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GK++H   + KG+ +++  +   L++MY +C +   A + FDE+  R+  +      
Sbjct: 422 IRQGKEIHSIAIVKGLQSNSF-VGGALVEMYCKCNDIIAAQMAFDEISERDTST------ 474

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP----RRNAIA 136
                                    WN LISG+A+  ++   R L   M       N   
Sbjct: 475 -------------------------WNALISGYARCNQIGKIRELVERMKSDGFEPNVYT 509

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WNS++   V N     A++LF E+    V  L+ D + +  ++ AC+ LA +  GKQ+H+
Sbjct: 510 WNSILAGLVENKQYDLAMQLFNEMQ---VSSLRPDIYTVGIILAACSKLATIHRGKQVHA 566

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
           + +  G D D+ +G++LV++Y KCG      QV N +  P+  C +A+++ YA  G    
Sbjct: 567 YSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHG---- 622

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
                                         E +++F +M  + V  D  T  SVLS+C  
Sbjct: 623 ---------------------------HGEEGIVIFRRMLDSRVRPDHVTFLSVLSSC-- 653

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
                    VH  + K+G          L++TY+          +   LK Y       M
Sbjct: 654 ---------VHAGSIKIGY-----ECFYLMETYN----------ITPTLKHY-----TCM 684

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVG 410
           + + S  G++++A  + + MP ++  ++W++++ G
Sbjct: 685 VDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGG 719



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 22/240 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   +IH GKQ+H + ++ G  +S   I   L+ MY +CG+      +++++   
Sbjct: 548 ILAACSKLATIHRGKQVHAYSIRAG-YDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNP 606

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           N    NAM+  +   GH E+ + +F  M     + +  ++  ++S    AG +K     F
Sbjct: 607 NLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECF 666

Query: 127 NDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             M   N       +  M+    R G   EA +L K +       ++ D+   + ++G C
Sbjct: 667 YLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNM------PMEADSVTWSALLGGC 720

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG---DFNSANQVLN---MMKEP 236
                +  G +I +  L+     ++     L NLY   G   D     +++N   M K P
Sbjct: 721 FIHKEVALG-EIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSP 779


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 144/517 (27%), Positives = 234/517 (45%), Gaps = 106/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C   + +  G +LH  ++K+  L   + + N L+ MY RCG+  +A  +FD +
Sbjct: 305 FASILGACTNPNDLGEGLKLHA-YIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNL 363

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
              N  +WNAMI G+ + G  E++ +LF  M QK    + F++                 
Sbjct: 364 RSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGK 422

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               LIS +AK G  + AR +FN MP RN I+WN+ I C  R+ 
Sbjct: 423 ELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHD 482

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             +EA + FK++  D V     D     T++ +C     LE G+ IH  I          
Sbjct: 483 LGKEAFQAFKQMRRDDVNP---DHITFITLLNSCTSPEDLERGRYIHGKI---------- 529

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                 N +G   + + AN               ALIS Y  CG + DAR VF R     
Sbjct: 530 ------NQWGMLSNNHVAN---------------ALISMYGRCGNLADAREVFYRIRRRD 568

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              WN+MI+  + +  +  A  LF K R  G   D  T  +VL A ++L  L+ G+ +HG
Sbjct: 569 LGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHG 628

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   D+ V                               L T+I +YS CG + D
Sbjct: 629 LVEKGGFGKDIRV-------------------------------LTTLIKMYSKCGSLRD 657

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+++F T+  K ++ WN+M+   + +    +AL LF  M    +  D  + ++ ++ACA 
Sbjct: 658 AENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACAR 717

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++++E G+++ A++   G+++D  +S SL++ Y +CG
Sbjct: 718 LTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCG 754



 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/520 (26%), Positives = 240/520 (46%), Gaps = 106/520 (20%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +++ AR LQ C    S+  GK++H H ++       + + N L+ MY +CG+  DA  +F
Sbjct: 100 LNFYARRLQQCVLAKSLAEGKKVHDH-MRSAQFKPDIYLNNMLISMYSKCGSIEDANNVF 158

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-------------- 104
             M  ++  SWNAMI G+   G  +++  LF  M      P +N F              
Sbjct: 159 QAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALE 218

Query: 105 -------------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                                  LI+ + K G L+ AR +FN+M  RN ++W +MI  YV
Sbjct: 219 FGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYV 278

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G +REA+ LF++L   +   +Q +    A+++GAC +   L  G ++H++I   GL+ 
Sbjct: 279 QHGDSREALALFRKL---IRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQ 335

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           + ++G++L+++Y +CG   +A QV                          D  R  +RTT
Sbjct: 336 EVLVGNALISMYSRCGSLANARQVF-------------------------DNLRSLNRTT 370

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
                 WN+MI+GY       EA  LF  M + G   D  T AS+L+ C+    L+ GK+
Sbjct: 371 ------WNAMIAGY-GEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKE 423

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H      G   D+ VA+AL+  Y+K G P +A K+F++                     
Sbjct: 424 LHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQ--------------------- 462

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                     MP +++ISWN+ I    ++    EA   F  M + D+  D  +  +++++
Sbjct: 463 ----------MPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNS 512

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           C +   LE G  +  ++   G+ S+  ++ +L+  Y +CG
Sbjct: 513 CTSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRCG 552



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 229/520 (44%), Gaps = 106/520 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  ++  G+Q+H    K G   S + ++  L+ MY +CG+   A  +F+EM  R
Sbjct: 207 ILSACQSPIALEFGEQIHSRIAKAG-YESDVNVSTALINMYCKCGSLELARKVFNEMRER 265

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS------------------- 105
           N  SW AMI G+++ G   ++L LF       + P K  F+                   
Sbjct: 266 NVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLH 325

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LIS +++ G L  AR +F+++   N   WN+MI  Y   G   
Sbjct: 326 AYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGY-GEGLME 384

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA RLF+ +     +  Q D F  A+++  CAD A L+ GK++HS I   G   D  + +
Sbjct: 385 EAFRLFRAMEQ---KGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVAT 441

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y KCG    A +V N M E                      R V         + 
Sbjct: 442 ALISMYAKCGSPEEARKVFNQMPE----------------------RNV---------IS 470

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+ IS    ++   EA   F +MRR+ V  D  T  ++L++C+S   LE G+ +HG   
Sbjct: 471 WNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKIN 530

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G++ +  VA+AL+  Y + G  +D                               A+ 
Sbjct: 531 QWGMLSNNHVANALISMYGRCGNLAD-------------------------------ARE 559

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  +  + L SWN+MI    Q+G+   A DLF        + DK++  +V+ A AN+  
Sbjct: 560 VFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLED 619

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           L+ G  +   V   G   D  + T+L+  Y KCG ++  E
Sbjct: 620 LDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAE 659



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 211/484 (43%), Gaps = 105/484 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL  C     +  GK+LH      G   + L +A  L+ MY +CG+P +A  +F++MP
Sbjct: 406 ASLLAICADRADLDRGKELHSQIASTG-WQTDLTVATALISMYAKCGSPEEARKVFNQMP 464

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------------------PQ------- 100
            RN  SWNA I    +    +++ Q F  M                     P+       
Sbjct: 465 ERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRY 524

Query: 101 -----------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                       N+   N LIS + + G L  AR +F  + RR+  +WN+MI   V++G 
Sbjct: 525 IHGKINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGA 584

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
              A  LF++  S   E  + D +    V+ A A+L  L+ G+ IH  +   G       
Sbjct: 585 NGSAFDLFRKYRS---EGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGG------- 634

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                  +GK                 D   L+ LI  Y+ CG + DA  VF    +   
Sbjct: 635 -------FGK-----------------DIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDV 670

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN+M++ Y  ++   +AL LF +M+  GV  D+ST ++ L+AC+ L  +EHGK++H  
Sbjct: 671 VCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQ 730

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  D  V+++L++ YS+                               CG +  A
Sbjct: 731 LKEAGMETDTRVSNSLIEMYSR-------------------------------CGCLCSA 759

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           K +F  M ++ + SWN++I G  QNG    AL+ +  M +  +  +K +  S++S+ A +
Sbjct: 760 KQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQL 819

Query: 450 SSLE 453
              E
Sbjct: 820 GEEE 823



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 210/457 (45%), Gaps = 75/457 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL SC +   +  G+ +H    + G+L++   +AN L+ MY RCGN  DA  +F  + RR
Sbjct: 509 LLNSCTSPEDLERGRYIHGKINQWGMLSNN-HVANALISMYGRCGNLADAREVFYRIRRR 567

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP--------------- 99
           +  SWNAMI   ++ G    +  LF                NV+                
Sbjct: 568 DLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIH 627

Query: 100 ---QKNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
              +K  F  ++     LI  ++K G L+ A  +F+ +  ++ + WN+M+  Y  +   +
Sbjct: 628 GLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQ 687

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A++LF+++    +E +  D+   +T + ACA L A+E+GK+IH+ +   G++ D+ + +
Sbjct: 688 DALKLFQQMQ---LEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSN 744

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV- 270
           SL+ +Y +CG   SA QV   M   D    +ALI+GY   G+ N A   ++     S V 
Sbjct: 745 SLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVP 804

Query: 271 ---MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST-LASVLSACSSLGFLEHGKQV 326
               + S++S Y    E+ +A      +++   +E +    A +++A    G L+  ++ 
Sbjct: 805 NKATFTSILSSYAQLGEEEQAFDFLESIKKEWNMEPSEQHYAYMVAALGRAGLLKEAEEF 864

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-------------- 372
                    I+++   SA L   S       AC++   +++ +T +              
Sbjct: 865 ---------IEEISAESAALMWESLL----VACRIHLNVELAETAVEHLLDAKAQASPAV 911

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
              ++++Y++ GR ED   +  TM    L++  S  +
Sbjct: 912 CEQLMSIYAAAGRWEDVSVLKTTMQEAGLVALKSCTI 948



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 142/318 (44%), Gaps = 62/318 (19%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           +Q +    A  +  C    +L  GK++H H+       D  L + L+++Y KCG    AN
Sbjct: 96  VQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDAN 155

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
            V   M++ D    +A+ISGYA  G+                               D E
Sbjct: 156 NVFQAMEDKDVVSWNAMISGYALHGR-------------------------------DQE 184

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A  LF++M+R G+  + +T  S+LSAC S   LE G+Q+H    K G   DV V++AL++
Sbjct: 185 AADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALIN 244

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y K G    A K+F+E++  + +    MI+                             
Sbjct: 245 MYCKCGSLELARKVFNEMRERNVVSWTAMIS----------------------------- 275

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
             G  Q+G   EAL LF  + +  ++ +K S AS++ AC N + L  G ++ A +   GL
Sbjct: 276 --GYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGL 333

Query: 468 DSDQIISTSLVDFYCKCG 485
           + + ++  +L+  Y +CG
Sbjct: 334 EQEVLVGNALISMYSRCG 351



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 82/121 (67%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D  L N +I++YS CG IEDA ++F+ M +K ++SWN+MI G + +G   EA DLF  M 
Sbjct: 134 DIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQ 193

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  L+ ++ +  S++SAC +  +LE GEQ+ +R+   G +SD  +ST+L++ YCKCG ++
Sbjct: 194 REGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLE 253

Query: 489 M 489
           +
Sbjct: 254 L 254


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 230/463 (49%), Gaps = 44/463 (9%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF-----SWNAMIEGFMKLGHKEK 90
           I N     +N+LL+   R   P   + L+  +   N F     S+ ++++   K+     
Sbjct: 80  IPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNH 139

Query: 91  SLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
            L++  +  +     + F    LI+ +A    +  AR LF+ M   +A+AWN +I  Y +
Sbjct: 140 GLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQ 199

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NG   +A+RLF+++ S     ++ D+ IL TV+ AC     L YG+ IH  +  NG   D
Sbjct: 200 NGHYDDALRLFEDMRSS---DMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAID 256

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           S L ++L+N+Y  CG  + A ++ + +        +A++SGYA  G + DAR +FD+  +
Sbjct: 257 SHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIE 316

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W++MISGY  +++  EAL LF +M +   + D  T+ SV+SACS +G L     +
Sbjct: 317 RDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWI 376

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H +  + G    + V +AL+D Y+K                               CG +
Sbjct: 377 HTYVDRSGFGRALSVNNALIDMYAK-------------------------------CGNL 405

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             A+ +F  MP K++ISW+SMI   + +G+   A+ LF  M ++++  +  +   V+ AC
Sbjct: 406 VKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYAC 465

Query: 447 ANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +   +E GE++F+  +   G+   +     +VD YC+  F++
Sbjct: 466 GHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLR 508


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  211 bits (537), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 208/415 (50%), Gaps = 63/415 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++    C + T A  LFDEMP R+  SW  MI GF++ G  E +  LF  MP ++  
Sbjct: 61  NSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIA 120

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN +I G+   G ++    LF +MP RN I+W SMI    ++G + EA+ LF+++    
Sbjct: 121 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCG 180

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           VE ++  +     VI ACA+ +AL  G QIH+H+   G  FD+ + +             
Sbjct: 181 VE-VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISA------------- 226

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                             ALI+ YANC +M D+ RVF      + V+W ++++GY  N +
Sbjct: 227 ------------------ALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCK 268

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             +AL +F +M R GVL + S+  S L++C  L  L+ G+++H  A K+G+  DV V   
Sbjct: 269 HEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVG-- 326

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
                                        N++I +Y  CG + D   IF+ +  K+++SW
Sbjct: 327 -----------------------------NSLIVMYYRCGNLNDGVVIFKRISKKNIVSW 357

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           NS+IVG +Q+G  + AL  F  M +  +  D+ +   ++SAC++    + G  +F
Sbjct: 358 NSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLF 412



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 174/410 (42%), Gaps = 75/410 (18%)

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAW 137
           MI   ++    +++  +F+ +   + + + M+I+G+A+      A  LF +MP ++ ++W
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSW 60

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           NSMI                                        C D A L   +++   
Sbjct: 61  NSMIK--------------------------------------GCFDCADLTMARKLFDE 82

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +    +    V  ++++N + + G    A  +   M   D    +++I GY   G++ D 
Sbjct: 83  MPERSV----VSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDG 138

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV--LEDASTLASVLSACS 315
            R+F      + + W SMI G   +    EAL LF +M   GV     +ST   V++AC+
Sbjct: 139 LRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA 198

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +   L  G Q+H H  K+G   D  +++AL                              
Sbjct: 199 NASALYQGVQIHAHVFKLGYSFDAYISAAL------------------------------ 228

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
            IT Y++C ++ED+  +F    + +++ W +++ G   N    +AL +F  M +  +  +
Sbjct: 229 -ITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPN 287

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + S  S +++C  + +L+ G ++      +GL++D  +  SL+  Y +CG
Sbjct: 288 QSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCG 337



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 161/405 (39%), Gaps = 109/405 (26%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N ++  Y   G   D L LF EMP RN  SW +MI G  + G  E++L LF  M      
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 99  --PQ----------------------------KNDFSWNMLISG-----FAKAGELKTAR 123
             P                             K  +S++  IS      +A   +++ + 
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+     N + W +++  Y  N    +A+++F E+  + V   Q       + + +C 
Sbjct: 243 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSS---FTSALNSCC 299

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L AL++G++IH+  +  GL+ D  +G+SL+ +Y +                        
Sbjct: 300 GLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYR------------------------ 335

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                  CG +ND   +F R +  + V WNS+I G   +     AL  F++M R+ V  D
Sbjct: 336 -------CGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPD 388

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T   +LSACS  G  + G+      C      +   A   LD Y        AC    
Sbjct: 389 EITFTGLLSACSHSGMSQKGR------CLFKYFSENKSAEVKLDHY--------AC---- 430

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
                       M+ +    G++E+A+ + R MP K+    NSM+
Sbjct: 431 ------------MVDILGRSGKLEEAEELIRNMPVKA----NSMV 459



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 23/236 (9%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L SC    ++  G+++H   +K G L + + + N L+ MY RCGN  D +++F  + ++N
Sbjct: 295 LNSCCGLEALDWGREIHTAAVKLG-LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 353

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN++I G  + G    +L  FN     M + ++ ++  L+S  + +G  +  R LF 
Sbjct: 354 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 413

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
                 +       +  M+    R+G   EA  L + +       ++ ++ +   ++ AC
Sbjct: 414 YFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMP------VKANSMVWLVLLSAC 467

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
              + LE  ++    I    +D +    S+ V   NLY     ++  +++   MK+
Sbjct: 468 TMHSKLEVAERAAKCI----IDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQ 519



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 115/292 (39%), Gaps = 49/292 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    +++ G Q+H H  K G  +    I+  L+  Y  C    D+L +F      
Sbjct: 193 VITACANASALYQGVQIHAHVFKLG-YSFDAYISAALITFYANCKQMEDSLRVFHGKLHM 251

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS-------------W----- 106
           N   W A++ G+      E +L++F       V+P ++ F+             W     
Sbjct: 252 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 311

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LI  + + G L     +F  + ++N ++WNS+I    ++G   
Sbjct: 312 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 371

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG---LDFDSV 208
            A+  F ++   +VE    D      ++ AC+     + G+ +  +   N    +  D  
Sbjct: 372 WALAFFNQMVRSMVEP---DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY 428

Query: 209 LGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGYANCGKMNDARR 259
             + +V++ G+ G    A +++ NM  + +      L+S      K+  A R
Sbjct: 429 --ACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAER 478


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  211 bits (537), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 208/415 (50%), Gaps = 63/415 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++    C + T A  LFDEMP R+  SW  MI GF++ G  E +  LF  MP ++  
Sbjct: 77  NSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIA 136

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN +I G+   G ++    LF +MP RN I+W SMI    ++G + EA+ LF+++    
Sbjct: 137 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCG 196

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           VE ++  +     VI ACA+ +AL  G QIH+H+   G  FD+ + +             
Sbjct: 197 VE-VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISA------------- 242

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                             ALI+ YANC +M D+ RVF      + V+W ++++GY  N +
Sbjct: 243 ------------------ALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCK 284

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             +AL +F +M R GVL + S+  S L++C  L  L+ G+++H  A K+G+  DV V   
Sbjct: 285 HEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVG-- 342

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
                                        N++I +Y  CG + D   IF+ +  K+++SW
Sbjct: 343 -----------------------------NSLIVMYYRCGNLNDGVVIFKRISKKNIVSW 373

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           NS+IVG +Q+G  + AL  F  M +  +  D+ +   ++SAC++    + G  +F
Sbjct: 374 NSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLF 428



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 178/415 (42%), Gaps = 75/415 (18%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           FS+ +MI   ++    +++  +F+ +   + + + M+I+G+A+      A  LF +MP +
Sbjct: 12  FSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVK 71

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           + ++WNSMI                                        C D A L   +
Sbjct: 72  DVVSWNSMIK--------------------------------------GCFDCADLTMAR 93

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           ++   +    +    V  ++++N + + G    A  +   M   D    +++I GY   G
Sbjct: 94  KLFDEMPERSV----VSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNG 149

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV--LEDASTLASV 310
           ++ D  R+F      + + W SMI G   +    EAL LF +M   GV     +ST   V
Sbjct: 150 RVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCV 209

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           ++AC++   L  G Q+H H  K+G   D  +++AL                         
Sbjct: 210 ITACANASALYQGVQIHAHVFKLGYSFDAYISAAL------------------------- 244

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                 IT Y++C ++ED+  +F    + +++ W +++ G   N    +AL +F  M + 
Sbjct: 245 ------ITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMRE 298

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  ++ S  S +++C  + +L+ G ++      +GL++D  +  SL+  Y +CG
Sbjct: 299 GVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCG 353



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 161/405 (39%), Gaps = 109/405 (26%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N ++  Y   G   D L LF EMP RN  SW +MI G  + G  E++L LF  M      
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 99  --PQ----------------------------KNDFSWNMLISG-----FAKAGELKTAR 123
             P                             K  +S++  IS      +A   +++ + 
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+     N + W +++  Y  N    +A+++F E+  + V   Q       + + +C 
Sbjct: 259 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSS---FTSALNSCC 315

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L AL++G++IH+  +  GL+ D  +G+SL+ +Y +                        
Sbjct: 316 GLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYR------------------------ 351

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                  CG +ND   +F R +  + V WNS+I G   +     AL  F++M R+ V  D
Sbjct: 352 -------CGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPD 404

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T   +LSACS  G  + G+      C      +   A   LD Y        AC    
Sbjct: 405 EITFTGLLSACSHSGMSQKGR------CLFKYFSENKSAEVKLDHY--------AC---- 446

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
                       M+ +    G++E+A+ + R MP K+    NSM+
Sbjct: 447 ------------MVDILGRSGKLEEAEELIRNMPVKA----NSMV 475



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 23/236 (9%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L SC    ++  G+++H   +K G L + + + N L+ MY RCGN  D +++F  + ++N
Sbjct: 311 LNSCCGLEALDWGREIHTAAVKLG-LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 369

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN++I G  + G    +L  FN     M + ++ ++  L+S  + +G  +  R LF 
Sbjct: 370 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 429

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
                 +       +  M+    R+G   EA  L + +       ++ ++ +   ++ AC
Sbjct: 430 YFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMP------VKANSMVWLVLLSAC 483

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
              + LE  ++    I    +D +    S+ V   NLY     ++  +++   MK+
Sbjct: 484 TMHSKLEVAERAAKCI----IDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQ 535



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 115/292 (39%), Gaps = 49/292 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    +++ G Q+H H  K G  +    I+  L+  Y  C    D+L +F      
Sbjct: 209 VITACANASALYQGVQIHAHVFKLG-YSFDAYISAALITFYANCKQMEDSLRVFHGKLHM 267

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS-------------W----- 106
           N   W A++ G+      E +L++F       V+P ++ F+             W     
Sbjct: 268 NVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIH 327

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LI  + + G L     +F  + ++N ++WNS+I    ++G   
Sbjct: 328 TAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGM 387

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG---LDFDSV 208
            A+  F ++   +VE    D      ++ AC+     + G+ +  +   N    +  D  
Sbjct: 388 WALAFFNQMVRSMVEP---DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHY 444

Query: 209 LGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGYANCGKMNDARR 259
             + +V++ G+ G    A +++ NM  + +      L+S      K+  A R
Sbjct: 445 --ACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAER 494


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 235/515 (45%), Gaps = 105/515 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           RLL SC +  ++  G+++H+  +K  +L   + +AN +L MY +CG+  +A  +FD+M  
Sbjct: 249 RLLSSCKSPSALECGREIHVEAMKARLLFD-VNVANCILNMYAKCGSIHEAREVFDKMET 307

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------NDFS------W---- 106
           ++  SW  +I G+   GH E + ++F  M Q+             N FS      W    
Sbjct: 308 KSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTV 367

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             L+  +AK G  K  R +F  +  R+ IAWN+MI      G  
Sbjct: 368 HSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNW 427

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA  ++ ++     E +  +      ++ AC +  AL +G++IHS ++ +G  FD  + 
Sbjct: 428 EEASEIYHQMQR---EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV- 483

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                                          +ALIS YA CG + DAR +F++      +
Sbjct: 484 ------------------------------QNALISMYARCGSIKDARLLFNKMVRKDII 513

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W +MI G   +    EAL +F  M++ G+  +  T  S+L+ACSS   L+ G+++H   
Sbjct: 514 SWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV 573

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            + G+  D  VA                               NT++ +YS CG ++DA+
Sbjct: 574 IEAGLATDAHVA-------------------------------NTLVNMYSMCGSVKDAR 602

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M  + ++++N+MI G + +    EAL LF  + +  L+ DK +  ++++ACAN  
Sbjct: 603 QVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 662

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SLE  +++ + V   G  SD  +  +LV  Y KCG
Sbjct: 663 SLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCG 697



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 235/495 (47%), Gaps = 106/495 (21%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI Y+  +L + +   ++  GK +H H L  G   S L +   L++MY +CG+  D   +
Sbjct: 345 RITYI-NVLNAFSGPAALKWGKTVHSHILNAG-HESDLAVGTALVKMYAKCGSYKDCRQV 402

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDF------------- 104
           F+++  R+  +WN MI G  + G+ E++ ++++      +MP K  +             
Sbjct: 403 FEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTAL 462

Query: 105 SW--------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
            W                    N LIS +A+ G +K AR LFN M R++ I+W +MI   
Sbjct: 463 HWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGL 522

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            ++G   EA+ +F+++       L+ +     +++ AC+  AAL++G++IH  ++  GL 
Sbjct: 523 AKSGLGAEALAVFQDMQQ---AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+ + ++LVN+Y                               + CG + DAR+VFDR 
Sbjct: 580 TDAHVANTLVNMY-------------------------------SMCGSVKDARQVFDRM 608

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           T    V +N+MI GY ++N   EAL LF +++  G+  D  T  ++L+AC++ G LE  K
Sbjct: 609 TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAK 668

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H    K G + D                               T L N +++ Y+ CG
Sbjct: 669 EIHSLVLKDGYLSD-------------------------------TSLGNALVSTYAKCG 697

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
              DA  +F  M  +++ISWN++I G +Q+G   + L LF  M    ++ D  +  S++S
Sbjct: 698 SFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLS 757

Query: 445 ACANISSLELGEQVF 459
           AC++   LE G + F
Sbjct: 758 ACSHAGLLEEGRRYF 772



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 245/524 (46%), Gaps = 108/524 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           DY+ ++L+ C     +  G+++H H ++   +     + N L+ MY++CG+  +A  +++
Sbjct: 143 DYM-KMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV-NALINMYIQCGSIEEARQVWN 200

Query: 66  EM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--------------------- 102
           ++    R   SWNAM+ G+++ G+ E++L+L   M Q                       
Sbjct: 201 KLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSAL 260

Query: 103 -----------------DFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                            D +  N +++ +AK G +  AR +F+ M  ++ ++W  +I  Y
Sbjct: 261 ECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGY 320

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
              G +  A  +F+++     E +  +      V+ A +  AAL++GK +HSHIL  G +
Sbjct: 321 ADCGHSEIAFEIFQKMQQ---EGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHE 377

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D  +G++LV +                               YA CG   D R+VF++ 
Sbjct: 378 SDLAVGTALVKM-------------------------------YAKCGSYKDCRQVFEKL 406

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            +   + WN+MI G        EA  ++H+M+R G++ +  T   +L+AC +   L  G+
Sbjct: 407 VNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGR 466

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H    K G + D+ V +AL+  Y++ G   DA  LF++                    
Sbjct: 467 EIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNK-------------------- 506

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                      M  K +ISW +MI GL+++G   EAL +F +M +  L+ ++ +  S+++
Sbjct: 507 -----------MVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILN 555

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           AC++ ++L+ G ++  +V   GL +D  ++ +LV+ Y  CG +K
Sbjct: 556 ACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 36/250 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y+  +L +C    S+   K++H   LK G L+ T  + N L+  Y +CG+ +DALL+
Sbjct: 648 KVTYI-NMLNACANSGSLEWAKEIHSLVLKDGYLSDT-SLGNALVSTYAKCGSFSDALLV 705

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGEL 119
           FD+M +RN  SWNA+I G  + G  +  LQLF  M     + +  ++  L+S  + AG L
Sbjct: 706 FDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLL 765

Query: 120 KTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           +  R  F  M R   I      +  M+    R G   E   L K +        Q +  I
Sbjct: 766 EEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMP------FQANTRI 819

Query: 175 LATVIGACADLAALEYGKQIHSHILVN--------GLDFD-SVLGSSLVNLYGKCGDFNS 225
              ++GAC          +IH ++ V          LD D + +  +L ++Y   G ++S
Sbjct: 820 WGALLGAC----------RIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDS 869

Query: 226 ANQVLNMMKE 235
           A ++  +M++
Sbjct: 870 AAKLRKLMEQ 879


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 156/563 (27%), Positives = 246/563 (43%), Gaps = 114/563 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C      H G+Q+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 30  GEILQGCVYERDFHTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEIAEVLFSKL 89

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 90  RVRNVFSWAAIIGVKCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGR 149

Query: 111 --------SG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                   SG              + K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 150 GVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNG 209

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  ++  + VE  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 210 MNEEAIRLMCDMREEGVEPTR---VTVSTCLSASANMGGVEEGKQSHALAVVNGLELDNI 266

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G    A  V                               FDR     
Sbjct: 267 LGTSVLNFYCKVGLVEYAEMV-------------------------------FDRMVGKD 295

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      +A+ +   MR   +  D  TL++++S  +     + GK+V  
Sbjct: 296 VVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQC 355

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  +     D+++AS  +D Y+K G   DA K+F      D IL NT++  Y+  G    
Sbjct: 356 YCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGE 415

Query: 385 -------------------------------RIEDAKHIFRTMPN----KSLISWNSMIV 409
                                          ++++AK +F  M +     +++SW +M+ 
Sbjct: 416 ALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMN 475

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           GL QNG   EA+     M +  +R + FS+   +SACAN++SL  G  V   +    L S
Sbjct: 476 GLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHS 535

Query: 470 DQI-ISTSLVDFYCKCGFIKMDE 491
             + I TSLVD Y KCG I   E
Sbjct: 536 SSVSIETSLVDMYAKCGDISKAE 558



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 229/498 (45%), Gaps = 87/498 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 137 KACGALQWRGFGRGVHGYVAKSG-LDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 195

Query: 73  FSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW------NM------------ 108
            +WNA++ G+++ G  E++++L        V P +   S       NM            
Sbjct: 196 VAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKQSHAL 255

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 256 AVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLLISGYVQQGLVEDA 315

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           +R+ K +    +E+L+ D   L+T++   A     + GK++  + + +  + D VL S+ 
Sbjct: 316 IRMCKLMR---LEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASTA 372

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------------ 261
           V++Y KCG    A +V +   + D    + L++ YA  G   +A R+F            
Sbjct: 373 VDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNV 432

Query: 262 ------------DRTTDTSSVM---------------WNSMISGYISNNEDTEALLLFHK 294
                       +   D +  M               W +M++G + N    EA+    K
Sbjct: 433 ITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMNGLVQNGCSEEAIHYLRK 492

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRG 353
           M+  G+  +  ++   LSAC++L  L  G+ VHG+  +  +    V + ++L+D Y+K G
Sbjct: 493 MQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCG 552

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIV 409
             S A K+F      +  L N MI+ Y+  G +E+A  ++R++ +  +    I++ +++ 
Sbjct: 553 DISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDNITFTNILS 612

Query: 410 GLSQNGSPIEALDLFCNM 427
             +  G   +A+++F +M
Sbjct: 613 ACNHAGDINQAIEIFSDM 630



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 158/346 (45%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  +EA+ L  E++      ++    I   ++  C        G+QIH+ IL NG   
Sbjct: 3   KNGEIKEALSLVTEMD---FRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNG--- 56

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + N+ +           + L+  YA C  +  A  +F +  
Sbjct: 57  ----------------DFYAKNEYIE----------TKLVIFYAKCDALEIAEVLFSKLR 90

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M ++ +  D   + +V  AC +L +   G+ 
Sbjct: 91  VRNVFSWAAIIGVKCRMGLVEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWRGFGRG 150

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+ D V VAS+L D Y K                               CG 
Sbjct: 151 VHGYVAKSGLDDCVFVASSLADMYGK-------------------------------CGV 179

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++DA+ +F  +P +++++WN+++VG  QNG   EA+ L C+M +  +   + ++++ +SA
Sbjct: 180 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSA 239

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +E G+Q  A   + GL+ D I+ TS+++FYCK G ++  E
Sbjct: 240 SANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAE 285



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 113/236 (47%), Gaps = 24/236 (10%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++  + +S++ I   L+ MY +CG+ + A  +F    RR 
Sbjct: 509 LSACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVF----RRK 564

Query: 72  CFS----WNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            FS    +NAMI  +   G+ E+++ L+  +     + ++ ++  ++S    AG++  A 
Sbjct: 565 LFSELPLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDNITFTNILSACNHAGDINQAI 624

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F+DM  ++ +      +  M+      G   +A+RL +E+        + DA ++ ++
Sbjct: 625 EIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMP------YEPDARMIQSL 678

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +  C      E  + +   +L +  D +S    ++ N Y   G ++   ++  MMK
Sbjct: 679 LATCNKEHKTELVEYLSKQLLESEPD-NSGNYVTISNAYAVEGSWDEVVKMREMMK 733



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG--LD 468
           L +NG   EAL L   M+  ++R+       ++  C        G+Q+ AR+   G    
Sbjct: 1   LCKNGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYA 60

Query: 469 SDQIISTSLVDFYCKCGFIKMDE 491
            ++ I T LV FY KC  +++ E
Sbjct: 61  KNEYIETKLVIFYAKCDALEIAE 83


>gi|302774719|ref|XP_002970776.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
 gi|300161487|gb|EFJ28102.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
          Length = 750

 Score =  211 bits (536), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 230/492 (46%), Gaps = 74/492 (15%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D   ++LA ++++C +   +  GK++H H     + N    +AN L++MY +CG+  DA
Sbjct: 7   LDRVYEHLASIVRACGSSRDLIAGKRIHAHIADANLGNYRF-LANLLVEMYGKCGSLHDA 65

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             +FD +   N FSWN ++  + + G   ++ Q F  MP KN   W  LI+  A++G + 
Sbjct: 66  RRVFDSIHSPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVVCWTGLITANAQSGYVL 125

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           +AR +F  MP+RN + W +M+ C V  G              D++E              
Sbjct: 126 SARGVFEKMPQRNRVTWTAMVWCLVNAG--------------DVIE-------------- 157

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
                      K IH  ++  G+     L   +V +Y  CG  + A  + +++   D   
Sbjct: 158 ----------AKIIHEQLVQMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPSKDVGM 207

Query: 241 LSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
            +A+I+ YA  G+  +A ++F+    RT   S ++WN++IS    N +   +L LF KMR
Sbjct: 208 WTAVIAAYAKYGRWQEAIKLFETMESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKMR 267

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           R GV  D+ TLA+ L  C++ G L  G+ V       G+  + +V S+L+  Y K G   
Sbjct: 268 RQGVRPDSLTLATALDTCAASGNLHEGRMVAELVTVYGLQSNDLVNSSLVHMYGKCGSLD 327

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DA ++F  +     ++ + MI  YS  G   +A  + + M +  +++             
Sbjct: 328 DARRVFDGMAHRGPVVWSKMIAAYSEHGHCSEAFVLLKEMESAKMVA------------- 374

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
                             D  S  + + AC ++ +LE G++V   +T+ GL+ D  +  +
Sbjct: 375 ------------------DASSCVAFLQACGSLLALEAGQEVHGWITMKGLEQDVFVGNA 416

Query: 477 LVDFYCKCGFIK 488
           LVD Y KCG ++
Sbjct: 417 LVDMYGKCGSVE 428



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 147/373 (39%), Gaps = 109/373 (29%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC------------ 72
           K +H   ++ GI    LP+A  ++QMY+ CG+  +A  LFD +P ++             
Sbjct: 159 KIIHEQLVQMGIAEQ-LPLAKFIVQMYLSCGSLDEARNLFDLLPSKDVGMWTAVIAAYAK 217

Query: 73  -----------------------FSWNAMIEGFMKLGHKEKSLQLF------NVMP---- 99
                                    WNA+I    + G  + SL+LF       V P    
Sbjct: 218 YGRWQEAIKLFETMESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKMRRQGVRPDSLT 277

Query: 100 -----------------------------QKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                        Q ND   + L+  + K G L  AR +F+ M 
Sbjct: 278 LATALDTCAASGNLHEGRMVAELVTVYGLQSNDLVNSSLVHMYGKCGSLDDARRVFDGMA 337

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R  + W+ MI  Y  +G   EA  L KE+ S    ++  DA      + AC  L ALE 
Sbjct: 338 HRGPVVWSKMIAAYSEHGHCSEAFVLLKEMES---AKMVADASSCVAFLQACGSLLALEA 394

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+++H  I + GL+ D  +G++LV++                               Y  
Sbjct: 395 GQEVHGWITMKGLEQDVFVGNALVDM-------------------------------YGK 423

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG + +A  VFD   + +   WN M+  Y S+   TEA+ +F +M + GV  +A T  SV
Sbjct: 424 CGSVEEAWAVFDNMKEKNWFSWNFMVEAYCSSGYSTEAIQVFLQMLQEGVKPNAKTFTSV 483

Query: 311 LSACSSLGFLEHG 323
           L AC   GF+  G
Sbjct: 484 LVACGHAGFIREG 496


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 231/489 (47%), Gaps = 78/489 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C    S+   K LH H ++       + + N+L+ +Y++ G+  +A  +FDEMP +
Sbjct: 70  LLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVK 129

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP--------------- 99
           N  SW AMI  + +  H +++L  F                +++P               
Sbjct: 130 NVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEI 189

Query: 100 -----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                + N F  N L+  +AK G ++ AR LF+ MP+R+ ++WN+MI  YV+NG   +A+
Sbjct: 190 VKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDAL 249

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           +LF+E+          D     T++   A    +E   ++   +    L    V  ++++
Sbjct: 250 KLFQEIPKR-------DVITWNTMMAGYAQCGDVENAVELFEKMPEQNL----VSWNTMI 298

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
             Y + G    A ++  +M E +    +A+ISG+A  G++ +A ++F    + + V WN+
Sbjct: 299 AGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNA 358

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MI+GY  N +   AL LF +M+   +  +  T A VL AC++L  LE G + H    + G
Sbjct: 359 MIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSG 418

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
              DV+V                                NT++ +Y+ CG IEDA+ +F 
Sbjct: 419 FQSDVLVG-------------------------------NTLVGMYAKCGSIEDARKVFD 447

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            M  +   S ++MIVG + NG   E+L+LF  M    L+ D+ +   V+SAC +   ++ 
Sbjct: 448 RMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDE 507

Query: 455 GEQVFARVT 463
           G Q F  +T
Sbjct: 508 GRQYFDIMT 516



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 188/382 (49%), Gaps = 45/382 (11%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+S + K G L  AR +F++MP +N ++W +MI  Y R+   +EA+  F E+      
Sbjct: 104 NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQD---V 160

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +Q + F  A+++ AC DL  L    + H  I+  G + +  +G+ LV++Y K G    A
Sbjct: 161 GIQPNHFTFASILPACTDLEVL---GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFA 217

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            ++ + M + D    +A+I+GY   G + DA ++F        + WN+M++GY    +  
Sbjct: 218 RELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVE 277

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            A+ LF KM                                          +++  + ++
Sbjct: 278 NAVELFEKMPEQ---------------------------------------NLVSWNTMI 298

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y + G   +A KLF  +   + I  N +I+ ++  G++E+A  +F+TMP  +++SWN+
Sbjct: 299 AGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNA 358

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI G SQNG    AL LF  M  +D++ +  + A V+ ACA ++ LE G +    V   G
Sbjct: 359 MIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSG 418

Query: 467 LDSDQIISTSLVDFYCKCGFIK 488
             SD ++  +LV  Y KCG I+
Sbjct: 419 FQSDVLVGNTLVGMYAKCGSIE 440



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 23/247 (9%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M    +  A +L +C     +  G + H   ++ G  +  L + N L+ MY +CG+  DA
Sbjct: 384 MKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVL-VGNTLVGMYAKCGSIEDA 442

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKA 116
             +FD M +++  S +AMI G+   G  ++SL+LF  M     + +  ++  ++S    A
Sbjct: 443 RKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHA 502

Query: 117 GELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERL--Q 169
           G +   R  F+ M R   I      +  MI    R G   EA        +DL+ ++  +
Sbjct: 503 GLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEA--------NDLINKMPIK 554

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQ 228
            DA +  +++ AC     ++ G+++  H++   L+  +     L+ N+Y   G ++    
Sbjct: 555 PDADMWGSLLSACRTHNNIDLGEKVAQHLI--ALNPQNPAPYVLLSNIYAAAGRWDDIGS 612

Query: 229 VLNMMKE 235
           V N MK+
Sbjct: 613 VRNRMKD 619


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  211 bits (536), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 228/450 (50%), Gaps = 69/450 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   + CG+   A+ +FDEMP R+  SW AM+ G  + G  +++ +LF  MP K+  
Sbjct: 101 NSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPVKDIA 160

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN ++ G+ + G++  A  LF  MPR+N I+W +MI    +N  + EA+ LFK +   L
Sbjct: 161 AWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNM---L 217

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++  +     VI ACA+  A   G Q+H  I+ +G  ++  + +SL+ LY  C    
Sbjct: 218 RCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANC---- 273

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                    K  +D                  +R+VF         +W +++SGY  N +
Sbjct: 274 ---------KRTED------------------SRKVFGEMVHEKVAVWTALLSGYSLNRK 306

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             +AL +F +M RN +L + ST AS L++CS+LG L+ GK++HG A K+G+     V ++
Sbjct: 307 HEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNS 366

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YS  G  +DA  +F E                           IF+    KS++SW
Sbjct: 367 LVVMYSDSGNVNDAVSVFIE---------------------------IFK----KSIVSW 395

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           NS+IVG +Q+G    A  +F  M +L+   D+ +   ++SAC++   L+ G ++F  ++ 
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYIS- 454

Query: 465 IGLDS-DQIIS--TSLVDFYCKCGFIKMDE 491
            GL+  D+ I   T +VD   +CG +K  E
Sbjct: 455 SGLNHIDRKIQHYTCMVDILGRCGELKEAE 484



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           ++++AR VFD+       ++  MISGY  +N   +AL LF +M     L D  +  S++S
Sbjct: 50  RLDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMP----LRDVVSWNSMIS 105

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
            C   G ++   ++     +  V+      +A+++   + GM   A +LF ++ V D   
Sbjct: 106 GCVECGDIDTAVKMFDEMPERSVVS----WTAMVNGCFRFGMVDQAERLFCQMPVKDIAA 161

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N M+  Y   G+++DA  +F+ MP K++ISW +MI GL QN    EAL+LF NM +  +
Sbjct: 162 WNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCI 221

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +    +   VI+ACAN  +  +G QV   +   G   ++ ++ SL+  Y  C
Sbjct: 222 KSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANC 273



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 136/311 (43%), Gaps = 62/311 (19%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D V  +S+++   +CGD ++A ++ + M E      +A+++G    G ++ A R+F +  
Sbjct: 96  DVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMP 155

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL------------------------ 301
                 WN+M+ GY+   +  +AL LF +M R  V+                        
Sbjct: 156 VKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKN 215

Query: 302 -------EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
                    + T   V++AC++      G QVHG   K G + +  V ++L+        
Sbjct: 216 MLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLI-------- 267

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                  T+Y++C R ED++ +F  M ++ +  W +++ G S N
Sbjct: 268 -----------------------TLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLN 304

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               +AL++F  M +  +  ++ + AS +++C+ + +L+ G+++      +GL +   + 
Sbjct: 305 RKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVG 364

Query: 475 TSLVDFYCKCG 485
            SLV  Y   G
Sbjct: 365 NSLVVMYSDSG 375



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/341 (18%), Positives = 149/341 (43%), Gaps = 49/341 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    + H+G Q+H   +K G L      A+ L+ +Y  C    D+  +F EM   
Sbjct: 231 VITACANAPAFHMGTQVHGFIIKSGFLYEEYVTAS-LITLYANCKRTEDSRKVFGEMVHE 289

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS-------------W----- 106
               W A++ G+      E +L +F      +++P ++ F+             W     
Sbjct: 290 KVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIH 349

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+  ++ +G +  A ++F ++ +++ ++WNS+I    ++G  +
Sbjct: 350 GVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGK 409

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL--VNGLDFDSVL 209
            A  +F ++   +    + D      ++ AC+    L+ G+++  +I   +N +D     
Sbjct: 410 WAFVIFGQM---IRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQH 466

Query: 210 GSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG---YANCGKMNDARRVFDRTT 265
            + +V++ G+CG+   A +++ +M+ +P++    AL+S    +++  +   A        
Sbjct: 467 YTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLD 526

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
             SS  +  + + Y S    +    L  KM++ G+++   +
Sbjct: 527 SKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGS 567


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 225/433 (51%), Gaps = 42/433 (9%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNC----FSWNAMIEGFMKLGHKEKSLQLFN 96
           L I N +++ + + G+   A+LLF ++         F++  + +    LG   +  +++ 
Sbjct: 97  LFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYG 156

Query: 97  VMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
            + +     + +  N L+  +A+ G ++  R +F +MP+R+ ++WN +I  YV+     +
Sbjct: 157 FVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYED 216

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           AV +F+ +       L+ +   + + + AC  L  LE GK+IH ++    L F   +G++
Sbjct: 217 AVDVFRRMQQQ--SSLRPNEATVVSTLSACIALKMLELGKEIHRYVR-EQLGFTIKIGNA 273

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++Y KCG  + A ++ N M      C ++++SGY NCG++++AR +F+R+     V+W
Sbjct: 274 LVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLW 333

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
            +MI+GY+  N   +A+ LF +M+   V  D  TL ++L+ C+ LG LE GK +HG+  +
Sbjct: 334 TAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDE 393

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
             ++ D +V +AL++ Y+K                               CG IE +  I
Sbjct: 394 NKIMIDAVVGTALIEMYAK-------------------------------CGFIEKSLEI 422

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  +  K   SW S+I GL+ NG   +AL+LF  M +  ++ D  +   V+SAC++   +
Sbjct: 423 FNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLV 482

Query: 453 ELGEQVFARVTII 465
           E G + F  +T +
Sbjct: 483 EEGRKHFRSMTAV 495



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 187/372 (50%), Gaps = 34/372 (9%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G L  A  +FN +       +N +I  + +NG  R+AV LF++L     E L  D F   
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLRE---EGLSPDNFTYP 136

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            V  A   L  +  G++++  ++ +GL+FD+ + +SL+++Y + G   +  QV   M + 
Sbjct: 137 FVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQR 196

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D    + LISGY  C +  DA  VF R    SS+  N                       
Sbjct: 197 DVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNE---------------------- 234

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
                   +T+ S LSAC +L  LE GK++H +  +  +   + + +AL+D Y K G  S
Sbjct: 235 --------ATVVSTLSACIALKMLELGKEIHRYV-REQLGFTIKIGNALVDMYCKCGHLS 285

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
            A ++F+++ +   I   +M++ Y +CG++++A+ +F   P + ++ W +MI G  Q   
Sbjct: 286 IAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNR 345

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             +A+ LF  M    +  D+F+L ++++ CA + +LE G+ +   +    +  D ++ T+
Sbjct: 346 FDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTA 405

Query: 477 LVDFYCKCGFIK 488
           L++ Y KCGFI+
Sbjct: 406 LIEMYAKCGFIE 417



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 178/407 (43%), Gaps = 98/407 (24%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA+++ + K GH   + ++FN MP K    W  ++SG+   G+L  AR LF   P R+ +
Sbjct: 272 NALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVV 331

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W +MI+ YV+     +AV LF+E+    ++R+  D F L  ++  CA L  LE GK IH
Sbjct: 332 LWTAMINGYVQFNRFDDAVALFREMQ---IKRVSPDRFTLVALLTGCAQLGTLEQGKWIH 388

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            +I  N +  D+V+G++L+ +                               YA CG + 
Sbjct: 389 GYIDENKIMIDAVVGTALIEM-------------------------------YAKCGFIE 417

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            +  +F+   +  +  W S+I G   N + ++AL LF +M + GV  D  T   VLSACS
Sbjct: 418 KSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACS 477

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
             G +E G++       V  I+                          +L+ Y       
Sbjct: 478 HGGLVEEGRKHFRSMTAVYQIE-------------------------PKLEHY-----GC 507

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           +I +    G++++A+ +    PN +    N +IV L                        
Sbjct: 508 LIDLLGRAGQLDEAEELIEKSPNVN----NEVIVPL------------------------ 539

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFY 481
                +++SAC    ++E+GE+V  R  ++G++S D  + T L + Y
Sbjct: 540 ---YGALLSACRTHGNVEMGERVAKR--LVGIESGDSSVHTLLANIY 581



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 31/238 (13%)

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G ++ A R+F+        ++N +I  +  N    +A+LLF ++R  G+  D  T   V 
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            A   LG +  G++V+G   K G+  D  V ++L+D Y++ G   +  ++F E+   D +
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
             N +I+ Y  C R EDA  +FR M  +S                               
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQS------------------------------S 229

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           LR ++ ++ S +SAC  +  LELG+++  R     L     I  +LVD YCKCG + +
Sbjct: 230 LRPNEATVVSTLSACIALKMLELGKEIH-RYVREQLGFTIKIGNALVDMYCKCGHLSI 286



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 105/240 (43%), Gaps = 20/240 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C    ++  GK +H +  +  I+   + +   L++MY +CG    +L +F+ +
Sbjct: 368 LVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAV-VGTALIEMYAKCGFIEKSLEIFNGL 426

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             ++  SW ++I G    G   K+L+LF  M Q     +D ++  ++S  +  G ++  R
Sbjct: 427 KEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGR 486

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKE---LNSDLVERLQCDAFIL 175
             F  M     I      +  +I    R G   EA  L ++   +N++++  L       
Sbjct: 487 KHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPL------Y 540

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++ AC     +E G+++    LV     DS + + L N+Y     +    +V   MK+
Sbjct: 541 GALLSACRTHGNVEMGERVAKR-LVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKD 599



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%)

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
            S G +  A+ IF  +    L  +N +I   ++NGS  +A+ LF  + +  L  D F+  
Sbjct: 77  PSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYP 136

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            V  A   +  +  GE+V+  V   GL+ D  +  SL+D Y + G ++
Sbjct: 137 FVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQ 184


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 200/421 (47%), Gaps = 34/421 (8%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +P    F  N ++  +  +     + ++F+ +PQ N FSWN L+  ++K+G L      F
Sbjct: 33  LPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTF 92

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             +P R+ + WN +I  Y  +G    AV+ +  +  D    L      L T++   +   
Sbjct: 93  EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLT--RVTLMTMLKLSSSNG 150

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            +  GKQIH  ++  G +   ++GS L+++Y K G  + A +V   + + +    + L+ 
Sbjct: 151 HVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMG 210

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           G   CG + DA ++F R  +  SV W++MI G   N  + EA+  F +M+  G+  D   
Sbjct: 211 GLLACGMIEDALQLF-RGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYP 269

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             SVL AC  LG +  G+Q+H    +  + D + V SAL+D Y K               
Sbjct: 270 FGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCK--------------- 314

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                           C  +  AK +F  M  K+++SW +M+VG  Q G   EA+ +F +
Sbjct: 315 ----------------CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLD 358

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M +  +  D ++L   ISACANISSLE G Q   +    GL     +S SLV  Y KCG 
Sbjct: 359 MQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGD 418

Query: 487 I 487
           I
Sbjct: 419 I 419



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 219/488 (44%), Gaps = 102/488 (20%)

Query: 3   TRIDYLARL-LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           TR+  +  L L S N H  + +GKQ+H   +K G   S L + + LL MY + G  +DA 
Sbjct: 135 TRVTLMTMLKLSSSNGH--VSLGKQIHGQVIKLG-FESYLLVGSPLLDMYSKVGCISDAK 191

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            +F  +  RN   +N ++ G +  G  E +LQLF  M +K+  SW+ +I G A+      
Sbjct: 192 KVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQ------ 244

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
                                    NG  +EA+  F+E+    +E L+ D +   +V+ A
Sbjct: 245 -------------------------NGMEKEAIECFREMK---IEGLKMDQYPFGSVLPA 276

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C  L A+  G+QIH+ I+   L     +GS+L+++Y KC   + A  V + MK+ +    
Sbjct: 277 CGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 336

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A++ GY   G+                                 EA+ +F  M+R+G+ 
Sbjct: 337 TAMVVGYGQTGRAG-------------------------------EAVKIFLDMQRSGID 365

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  TL   +SAC+++  LE G Q HG A   G+I  + V+++L+  Y K G   D+ +L
Sbjct: 366 PDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRL 425

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F+E+ V D +    M++ Y+  GR                                +EA+
Sbjct: 426 FNEMNVRDEVSWTAMVSAYAQFGR-------------------------------AVEAI 454

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIISTSLVDF 480
            LF  M +L L+ D  +L  VISAC+    +E G++ F   +   G+       + ++D 
Sbjct: 455 QLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDL 514

Query: 481 YCKCGFIK 488
           + + G I+
Sbjct: 515 FSRSGRIE 522


>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 656

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 239/488 (48%), Gaps = 47/488 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C +   +  G+Q+H H +  G     L + N L+ MY  CG   DA  +FD  P  
Sbjct: 109 LAAACASRKDVIEGRQVHAHAVSHG-FGDNLYLRNALIFMYSACGCLWDARRVFDAGPVW 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN ++  ++  G  ++++++F  MP++N  + + ++S F + G +  AR +F+   
Sbjct: 168 DAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAE 227

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+   W +MI C+ RN    EA+ +F  +     ER   D  ++ +V+ ACA    ++ 
Sbjct: 228 CRDIFTWTAMISCFERNDMFAEALHVFSCMRR---ERWHVDEPLMVSVVSACAQSEVIQN 284

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+  H  ++  GL     + ++L+++Y  C D  +A ++ +  +  D +  +++I+GY  
Sbjct: 285 GQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLK 344

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + DA  +F    +  +V W+++ISG + NN+ ++AL +F  M+  G+  D  T+ SV
Sbjct: 345 NGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSV 404

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SAC++L  LE GK VH                                +   + + Y +
Sbjct: 405 ISACTNLSALEKGKSVH--------------------------------EYIKQNQYYVS 432

Query: 371 ILLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           ++L T +I +Y  CG +E A   F  M  K    WN++IVGL+ NG  +++LD+F  M  
Sbjct: 433 LVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEA 492

Query: 430 LDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCK 483
            D    ++ +   V+SAC +   ++ G   F  +        QI+        +VD   +
Sbjct: 493 SDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQ----HRYQIVPNIRHYGCMVDLLGR 548

Query: 484 CGFIKMDE 491
            G++K  E
Sbjct: 549 AGYVKEAE 556



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 184/387 (47%), Gaps = 37/387 (9%)

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           NA + N+++   +  G     + L+  L +        D++    +  ACA    +  G+
Sbjct: 70  NAFSCNTLLKSALIGGMPHLCLPLYASLPAPP------DSYTHPILAAACASRKDVIEGR 123

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKC-------------------------------G 221
           Q+H+H + +G   +  L ++L+ +Y  C                               G
Sbjct: 124 QVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYVHAG 183

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           D + A +V   M + +   +S+++S +   G +++ARRVFD         W +MIS +  
Sbjct: 184 DVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFER 243

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N+   EAL +F  MRR     D   + SV+SAC+    +++G+  HG   + G+   V V
Sbjct: 244 NDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNV 303

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +AL+  YS       A +LF   +  D    N+MI  Y   G ++DA  +F  MPNK  
Sbjct: 304 QNALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDN 363

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           +SW+++I G  QN    +AL +F NM    +R D+ ++ SVISAC N+S+LE G+ V   
Sbjct: 364 VSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEY 423

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +         ++ TSL++ Y KCG ++
Sbjct: 424 IKQNQYYVSLVLGTSLINMYMKCGCLE 450


>gi|255559140|ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540252|gb|EEF41825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 525

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 242/472 (51%), Gaps = 43/472 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   DA +LFD+MP RN  SWN MI G++     +++ +LF  MP+++ F
Sbjct: 10  NSMISAYAKNGRVIDARVLFDKMPCRNLVSWNTMIAGYLHNNKVDEAYELFVKMPRRDLF 69

Query: 105 SWNMLISGFAKAGELKTARTLFNDMP---RRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           SW ++I+ + + G L+ A+ L N +P   +++A  WN+MI  Y R G   +A RLF E+ 
Sbjct: 70  SWTLMITCYTQNGMLEKAKQLLNSLPCNYKKDAACWNAMISGYSREGRYDDAKRLFNEMP 129

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHS--HILVNGLDFDSVLGSSLVNLYGK 219
                        +  ++   + LA      Q+     +    L+ D V  + +V+ + +
Sbjct: 130 -------------VKNIVSWNSMLAGYTQNGQMSLALQLFHEMLERDVVSWNLMVDGFVE 176

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
            GD +SA +    + EP+      ++ G+A  GK+ +ARR+FD+    + V WN+MIS Y
Sbjct: 177 LGDLDSAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAY 236

Query: 280 ISNNEDTEALLLFHKMR---------------RNGVLEDASTLASVL-----SACSSL-- 317
           + + +  EA  LF +M                R G L++A    S L     +A +++  
Sbjct: 237 VQSRQIDEAEKLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKLPYKNIAAQTAMIS 296

Query: 318 GFLEHGKQVHGHAC--KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           G++++ K         ++G   D++  + +L  Y++ G   +A  LF ++   D +  NT
Sbjct: 297 GYIKYNKIDEARQIFNEIGT-PDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKKDIVSWNT 355

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           M+  Y+  G++E A  +F+ M  ++L+SWNS+I G   +G  ++AL  F  M     + D
Sbjct: 356 MVAAYAQVGQMERALKVFKEMGERNLVSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPD 415

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + + A  +S+CA +++L++G Q+   V   G  +D  +  +L+  Y KCG I
Sbjct: 416 QSTFACALSSCAIVAALQVGRQLHHLVIKSGYINDLFVCNALITMYAKCGKI 467



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/418 (30%), Positives = 207/418 (49%), Gaps = 51/418 (12%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G  + AL LF EM  R+  SWN M++GF++LG  + + + F  +P+ N  
Sbjct: 137 NSMLAGYTQNGQMSLALQLFHEMLERDVVSWNLMVDGFVELGDLDSAWEFFKKVPEPNIV 196

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL--NS 162
           SW  ++ GFA+ G+L  AR LF+ MP +N ++WN+MI  YV++    EA +LF+E+    
Sbjct: 197 SWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYVQSRQIDEAEKLFEEMPKRD 256

Query: 163 DLVERLQCDAFILATVIG-ACADLAALEYGK------QIHSHILVNGLD----------- 204
            +      + ++ A  +  A   L+ L Y         I  +I  N +D           
Sbjct: 257 SVSWTTMINGYVRAGKLDEARKTLSKLPYKNIAAQTAMISGYIKYNKIDEARQIFNEIGT 316

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D V  ++++  Y +CG  + A  +   M + D    + +++ YA  G+M  A +VF   
Sbjct: 317 PDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKKDIVSWNTMVAAYAQVGQMERALKVFKEM 376

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            + + V WNS+ISG++ +    +AL  F  M+  G   D ST A  LS+C+ +  L+ G+
Sbjct: 377 GERNLVSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPDQSTFACALSSCAIVAALQVGR 436

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+H    K G I+D+ V +AL                               IT+Y+ CG
Sbjct: 437 QLHHLVIKSGYINDLFVCNAL-------------------------------ITMYAKCG 465

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           +I +AK +F+ + N  ++SWNS+I G + NG   EAL LF  M    +  D+ +   V
Sbjct: 466 KILEAKLVFKGICNADVVSWNSLIGGYALNGCGEEALTLFEEMKLAGVVPDQVTFIGV 523



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L SC    ++ VG+QLH   +K G +N  L + N L+ MY +CG   +A L+F  +   +
Sbjct: 423 LSSCAIVAALQVGRQLHHLVIKSGYIND-LFVCNALITMYAKCGKILEAKLVFKGICNAD 481

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             SWN++I G+   G  E++L LF  M
Sbjct: 482 VVSWNSLIGGYALNGCGEEALTLFEEM 508


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/519 (27%), Positives = 246/519 (47%), Gaps = 78/519 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           L+++C +   +   KQ+H   +  G++ N  +P            G+   A ++FD MP 
Sbjct: 25  LIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPG 81

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK---------------------- 101
            N F WN MI+G+ ++G    ++ ++       VMP +                      
Sbjct: 82  PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      N F  N LI  ++ +GE+  AR +F+   + + + WN MI  Y R+   
Sbjct: 142 HDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQF 201

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            E+++LF E+      R+   +  L +V+ AC+ L  L  GK++H ++    ++   VL 
Sbjct: 202 DESMKLFDEMER---MRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLE 258

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+++Y  CGD ++A  + + MK  D    +A+++G+ N G++  AR  FD+  +   V
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W +MI GY+  N   E L LF +M+   +  D  T+ S+L+AC+ LG LE G+ +  + 
Sbjct: 319 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI 378

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K  +  D  V +AL+D                               +Y +CG +E A 
Sbjct: 379 DKNEIKIDSFVGNALID-------------------------------MYFNCGNVEKAI 407

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF  MP++  ISW ++I GL+ NG   EALD+F  M K  +  D+ +   V+ AC +  
Sbjct: 408 RIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSG 467

Query: 451 SLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIK 488
            ++ G++ FAR+T   G++ +      +VD   + G +K
Sbjct: 468 MVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLK 506



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 157/361 (43%), Gaps = 67/361 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    ++VGK++H  ++K   +     + N L+ MY  CG+   AL +FD M
Sbjct: 223 LVSVLSACSKLKDLNVGKRVH-RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNM 281

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW A++ GF  LG    +   F+ MP+++  SW  +I G+ +    K   +LF 
Sbjct: 282 KSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFR 341

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M   N                                  ++ D F + +++ ACA L A
Sbjct: 342 EMQAAN----------------------------------IKPDEFTMVSILTACAHLGA 367

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE G+ I ++I  N +  DS +G++L+++Y  CG+   A ++ N M   D    +A+I G
Sbjct: 368 LELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG 427

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A                          I+GY       EAL +F +M +  +  D  T 
Sbjct: 428 LA--------------------------INGY-----GEEALDMFSQMLKASITPDEVTC 456

Query: 308 ASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             VL AC+  G ++ GK+       + G+  +V     ++D   + G   +A ++   + 
Sbjct: 457 IGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMP 516

Query: 367 V 367
           V
Sbjct: 517 V 517



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++ +G+ +  +  K  I   +  + N L+ MY  CGN   A+ +F+ M
Sbjct: 355 MVSILTACAHLGALELGEWIKAYIDKNEIKIDSF-VGNALIDMYFNCGNVEKAIRIFNAM 413

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P R+  SW A+I G    G+ E++L +F+ M +     ++ +   ++     +G +   +
Sbjct: 414 PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGK 473

Query: 124 TLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M  ++ I  N      M+    R G  +EA  + K +       ++ ++ +  ++
Sbjct: 474 KFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMP------VKPNSIVWGSL 527

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMM 233
           +GAC      E  +     I    L+ +   G+  V   N+Y  C  +   ++V  +M
Sbjct: 528 LGACRVHRDEEMAEMAAQQI----LELEPENGAVYVLLCNIYAACNRWEKLHEVRKLM 581



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 32/181 (17%)

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           S++  C S+  L   KQ+H      G+I + IV + ++         +  CK        
Sbjct: 24  SLIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQII---------AFCCK-------- 63

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                          G +E A+ +F TMP  +   WN+MI G S+ G P  A+ ++C M 
Sbjct: 64  ------------HELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEML 111

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  +  D+++   ++      ++++ G ++   +  +G  S+  +  +L+  Y   G + 
Sbjct: 112 ERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVS 171

Query: 489 M 489
           +
Sbjct: 172 V 172


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 229/456 (50%), Gaps = 58/456 (12%)

Query: 30  HFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89
           H LK G  +    + N +L +Y + G    A  LFDEMP R    WN MI G+ K G++E
Sbjct: 109 HVLKSG-YDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 167

Query: 90  KSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           ++  LF+VM      +N  +W  +I+G AK G LKTAR  F+ MP R+ ++WN+M+  Y 
Sbjct: 168 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 227

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           + G   E +RLF ++ S     +Q D    ATVI +C+ L     G    S  +V  LD 
Sbjct: 228 QGGAPEETIRLFNDMLSP--GNVQPDETTWATVISSCSSL-----GDPCLSESIVRKLD- 279

Query: 206 DSV-------LGSSLVNLYGKCGDFNSANQV---LNMMKEPDDFCLSALISGYANCGKMN 255
           D V       + ++L++++ KCG+  +A+++   L + K       +A+IS YA  G + 
Sbjct: 280 DKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLP 339

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM--RRNGVLEDASTLASVLSA 313
            A+ +FD+     +V WNSMI+GY  N E  +A+ LF +M    +    D  T+ SV SA
Sbjct: 340 SAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSA 399

Query: 314 CSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           C  LG L  G        KV  I   + V ++L++ YS+ G   DA  +F E+   D   
Sbjct: 400 CGHLGELGLGNWAVS-ILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRD--- 455

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                                       L+S+N++I G +++G  +E+++L   M +  +
Sbjct: 456 ----------------------------LVSYNTLISGFAEHGHGMESIELLSKMKEDGI 487

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
             D+ +  ++++AC++   L+ G+++F  +    +D
Sbjct: 488 EPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVD 523



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 173/329 (52%), Gaps = 21/329 (6%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D ++   ++G  A    +E+ +++   +     D      + +++ Y KCG+   A+ + 
Sbjct: 118 DHYVRNGILGIYAKYGPIEFARKLFDEMP----DRTVADWNVMISGYWKCGNEEEASTLF 173

Query: 231 NMMKEPD----DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
           ++M + +        + +I+G+A  G +  AR  FD+  + S V WN+M+SGY       
Sbjct: 174 HVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPE 233

Query: 287 EALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASA 344
           E + LF+ M   G V  D +T A+V+S+CSSLG     +  V     KVG   +  V +A
Sbjct: 234 ETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTA 293

Query: 345 LLDTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           LLD ++K G    A K+F +L VY    ++  N MI+ Y+  G +  AKH+F  MP +  
Sbjct: 294 LLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDT 353

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +SWNSMI G +QNG   +A+ LF  M  ++   + D+ ++ SV SAC ++  L LG    
Sbjct: 354 VSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWA- 412

Query: 460 ARVTIIGLDSDQI---ISTSLVDFYCKCG 485
             V+I+ ++  QI   +  SL++ Y +CG
Sbjct: 413 --VSILKVNHIQISISVYNSLINMYSRCG 439



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 70/332 (21%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFN---VMPQKNDFSWNMLISGFAKAGELKTARTL 125
           R N F   A+++   K G+ E + ++F    V   ++   WN +IS +A+ G+L +A+ L
Sbjct: 285 RPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHL 344

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+ MP+R+ ++WNSMI  Y +NG + +A++LF+E+ S    R + D   + +V  AC  L
Sbjct: 345 FDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSR-KPDEVTMVSVFSACGHL 403

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             L  G    S + VN +     + +SL+N+Y +                          
Sbjct: 404 GELGLGNWAVSILKVNHIQISISVYNSLINMYSR-------------------------- 437

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
                CG M DA  +F        V +N++ISG+  +    E++ L  KM+ +G+  D  
Sbjct: 438 -----CGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRI 492

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  ++L+ACS  G                          LLD         +  +LF  +
Sbjct: 493 TYIAILTACSHAG--------------------------LLD---------EGQRLFESI 517

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           K  D      MI +    GR+E+A  + ++MP
Sbjct: 518 KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMP 549



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 102/208 (49%), Gaps = 11/208 (5%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           LK   +  ++ + N L+ MY RCG+  DA+L+F EM  R+  S+N +I GF + GH  +S
Sbjct: 416 LKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMES 475

Query: 92  LQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
           ++L + M     + +  ++  +++  + AG L   + LF  +   +   +  MI    R 
Sbjct: 476 IELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRA 535

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA++L + +       ++  A I  +++ A +    +E G ++ +  L      +S
Sbjct: 536 GRLEEAMKLIQSMP------MEPHAGIYGSLLNATSIHKQVELG-ELAAAKLFKVEPHNS 588

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKE 235
              + L N+Y   G +   ++V + M++
Sbjct: 589 GNYALLSNIYASAGRWKEGDKVRDTMRK 616


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 229/456 (50%), Gaps = 58/456 (12%)

Query: 30  HFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89
           H LK G  +    + N +L +Y + G    A  LFDEMP R    WN MI G+ K G++E
Sbjct: 52  HVLKSG-YDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEE 110

Query: 90  KSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           ++  LF+VM      +N  +W  +I+G AK G LKTAR  F+ MP R+ ++WN+M+  Y 
Sbjct: 111 EASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 170

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           + G   E +RLF ++ S     +Q D    ATVI +C+ L     G    S  +V  LD 
Sbjct: 171 QGGAPEETIRLFNDMLSP--GNVQPDETTWATVISSCSSL-----GDPCLSESIVRKLD- 222

Query: 206 DSV-------LGSSLVNLYGKCGDFNSANQV---LNMMKEPDDFCLSALISGYANCGKMN 255
           D V       + ++L++++ KCG+  +A+++   L + K       +A+IS YA  G + 
Sbjct: 223 DKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLP 282

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM--RRNGVLEDASTLASVLSA 313
            A+ +FD+     +V WNSMI+GY  N E  +A+ LF +M    +    D  T+ SV SA
Sbjct: 283 SAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSA 342

Query: 314 CSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           C  LG L  G        KV  I   + V ++L++ YS+ G   DA  +F E+   D   
Sbjct: 343 CGHLGELGLGNWAVS-ILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRD--- 398

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                                       L+S+N++I G +++G  +E+++L   M +  +
Sbjct: 399 ----------------------------LVSYNTLISGFAEHGHGMESIELLSKMKEDGI 430

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
             D+ +  ++++AC++   L+ G+++F  +    +D
Sbjct: 431 EPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVD 466



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 173/329 (52%), Gaps = 21/329 (6%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D ++   ++G  A    +E+ +++   +     D      + +++ Y KCG+   A+ + 
Sbjct: 61  DHYVRNGILGIYAKYGPIEFARKLFDEMP----DRTVADWNVMISGYWKCGNEEEASTLF 116

Query: 231 NMMKEPD----DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
           ++M + +        + +I+G+A  G +  AR  FD+  + S V WN+M+SGY       
Sbjct: 117 HVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPE 176

Query: 287 EALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASA 344
           E + LF+ M   G V  D +T A+V+S+CSSLG     +  V     KVG   +  V +A
Sbjct: 177 ETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTA 236

Query: 345 LLDTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           LLD ++K G    A K+F +L VY    ++  N MI+ Y+  G +  AKH+F  MP +  
Sbjct: 237 LLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDT 296

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +SWNSMI G +QNG   +A+ LF  M  ++   + D+ ++ SV SAC ++  L LG    
Sbjct: 297 VSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWA- 355

Query: 460 ARVTIIGLDSDQI---ISTSLVDFYCKCG 485
             V+I+ ++  QI   +  SL++ Y +CG
Sbjct: 356 --VSILKVNHIQISISVYNSLINMYSRCG 382



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 70/332 (21%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFN---VMPQKNDFSWNMLISGFAKAGELKTARTL 125
           R N F   A+++   K G+ E + ++F    V   ++   WN +IS +A+ G+L +A+ L
Sbjct: 228 RPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHL 287

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+ MP+R+ ++WNSMI  Y +NG + +A++LF+E+ S    R + D   + +V  AC  L
Sbjct: 288 FDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSR-KPDEVTMVSVFSACGHL 346

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             L  G    S + VN +     + +SL+N+Y +C                         
Sbjct: 347 GELGLGNWAVSILKVNHIQISISVYNSLINMYSRC------------------------- 381

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
                 G M DA  +F        V +N++ISG+  +    E++ L  KM+ +G+  D  
Sbjct: 382 ------GSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRI 435

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  ++L+ACS  G                          LLD         +  +LF  +
Sbjct: 436 TYIAILTACSHAG--------------------------LLD---------EGQRLFESI 460

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           K  D      MI +    GR+E+A  + ++MP
Sbjct: 461 KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMP 492



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 102/208 (49%), Gaps = 11/208 (5%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           LK   +  ++ + N L+ MY RCG+  DA+L+F EM  R+  S+N +I GF + GH  +S
Sbjct: 359 LKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMES 418

Query: 92  LQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
           ++L + M     + +  ++  +++  + AG L   + LF  +   +   +  MI    R 
Sbjct: 419 IELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRA 478

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA++L + +       ++  A I  +++ A +    +E G ++ +  L      +S
Sbjct: 479 GRLEEAMKLIQSMP------MEPHAGIYGSLLNATSIHKQVELG-ELAAAKLFKVEPHNS 531

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKE 235
              + L N+Y   G +   ++V + M++
Sbjct: 532 GNYALLSNIYASAGRWKEGDKVRDTMRK 559


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 241/497 (48%), Gaps = 87/497 (17%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-----AL 61
           ++  LL+ C    S+H   QLH H +  G+ + T    +++L  Y  C  P       A 
Sbjct: 14  HVRELLRRCG---SVHRLNQLHAHLVVHGVDDVT----SQILASY--CALPAGGGVWYAR 64

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFS------------ 105
            LFD +P  + F +N++I  +      +++L L   M ++    N+F+            
Sbjct: 65  QLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQ 124

Query: 106 -W----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            W                      N L+  +A AG L  +R  F++M  RN ++WNSMI+
Sbjct: 125 AWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIN 184

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y + G  REA  LF+ +     + L  D F L +++ AC+    LE+GK +HSH+LV G
Sbjct: 185 GYAQAGNTREACSLFEGMRR---QGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRG 241

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
              D +L ++LV++YGKCGD   A+   +MM   +    ++++   A    ++ AR  F+
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           +  + S + WN+MIS Y+      EAL L+++M+  G+  D  TLA+VLSAC  LG L  
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK +H                 + D +   G+                 L N+++ +Y+ 
Sbjct: 362 GKMIH---------------DCIRDNFHNPGVA----------------LFNSLLDMYAR 390

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG+++ A  +F  MP+K++ISWN++I  L+ +G   +AL  F +M       D+ +  ++
Sbjct: 391 CGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVAL 450

Query: 443 ISACANISSLELGEQVF 459
           +SAC +   LE G+  F
Sbjct: 451 LSACNHGGLLEAGQYYF 467



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 190/401 (47%), Gaps = 36/401 (8%)

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLIS--GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
           H+   L    V+   +D +  +L S       G +  AR LF+ +P  +   +NS+I  Y
Sbjct: 26  HRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAY 85

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
             +   +EA+ L + +   +   +  + F L  ++ ACA + A E       H++V    
Sbjct: 86  CNSHCPQEALPLLRGM---IRRGILPNEFTLPFLLKACARVQAWE-------HVMVT--- 132

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                       +G         QV         F  +AL+  YA+ G + D+RR FD  
Sbjct: 133 ------------HGVVVKLGFVGQV---------FVGNALLHSYASAGSLGDSRRFFDEM 171

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            D + V WNSMI+GY       EA  LF  MRR G+L D  TL S+L ACS+ G LE GK
Sbjct: 172 VDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK 231

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            VH H    G   D+I+A+AL+D Y K G    A   F  +   + +   +M+   +   
Sbjct: 232 LVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRA 291

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            I+ A+  F  +P KS+ISWN+MI    Q G   EALDL+  M  L L  D+F+LA+V+S
Sbjct: 292 SIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLS 351

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AC  +  L  G+ +   +     +    +  SL+D Y +CG
Sbjct: 352 ACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCG 392



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 138/279 (49%), Gaps = 35/279 (12%)

Query: 215 NLYGKCGDFNSANQV-LNMMKEPDDFCLSALISGY---ANCGKMNDARRVFDRTTDTSSV 270
            L  +CG  +  NQ+  +++    D   S +++ Y      G +  AR++FDR  D    
Sbjct: 17  ELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           ++NS+I  Y +++   EAL L   M R G+L +  TL  +L AC+ +   EH    HG  
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G +  V V +ALL +Y+                               S G + D++
Sbjct: 137 VKLGFVGQVFVGNALLHSYA-------------------------------SAGSLGDSR 165

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
             F  M +++++SWNSMI G +Q G+  EA  LF  M +  L  D+F+L S++ AC+   
Sbjct: 166 RFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEG 225

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +LE G+ V + + + G   D I++ +LVD Y KCG + M
Sbjct: 226 NLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLM 264



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 163/395 (41%), Gaps = 76/395 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +C+   ++  GK +H H L +G     L +AN L+ MY +CG         D +
Sbjct: 214 LVSLLFACSAEGNLEFGKLVHSHLLVRGC-RIDLILANALVDMYGKCG---------DLL 263

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
               CF                      ++MP KN  SW  ++   AK   +  AR  F 
Sbjct: 264 MAHTCF----------------------DMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +P ++ I+WN+MI CYV+ G   EA+ L+  +    +  L  D F LA V+ AC  L  
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMK---LLGLAPDEFTLAAVLSACGQLGD 358

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GK IH  I  N  +    L +SL+++Y +CG  ++A  + + M   +    +A+I  
Sbjct: 359 LASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGA 418

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A  G+  D                               AL+ F  M  +    D  T 
Sbjct: 419 LAMHGRAQD-------------------------------ALMFFRSMVSDAFPPDEITF 447

Query: 308 ASVLSACSSLGFLEHGKQV-----HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            ++LSAC+  G LE G+       H +  K GV       + ++D   + G  + A  L 
Sbjct: 448 VALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEH----YACMVDLLGRGGQLAKAVDLI 503

Query: 363 SELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTM 396
            ++ +  D ++   ++      G I+  K + + +
Sbjct: 504 KDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQL 538



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     +  GK +H   ++    N  + + N LL MY RCG    A+ LF EM
Sbjct: 346 LAAVLSACGQLGDLASGKMIH-DCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEM 404

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLIS-----GFAKAGE 118
           P +N  SWNA+I      G  + +L  F  M       ++ ++  L+S     G  +AG+
Sbjct: 405 PSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQ 464

Query: 119 --LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              +  R ++N  P     A   M+    R G   +AV L K++       ++ D  +  
Sbjct: 465 YYFQAMRHVYNVKPGVEHYA--CMVDLLGRGGQLAKAVDLIKDMP------MRPDVVVWG 516

Query: 177 TVIGACADLAALEYGKQIHSHIL 199
            ++GAC     ++ GKQ+   +L
Sbjct: 517 ALLGACRIHGHIQIGKQVIKQLL 539


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 223/463 (48%), Gaps = 51/463 (11%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G   +A  LFDEMPRRN  SWN M+    + G  E +  LF+ MP +N++SW +++S + 
Sbjct: 56  GRLAEARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYV 115

Query: 115 KAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           +AGEL  AR L + MP  + A  +N+MI  Y +NG   +A+ L +E+ +        D  
Sbjct: 116 RAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAP-------DIV 168

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
              +V+G       +    Q    +     D D V  + ++  Y + GD + A+   + +
Sbjct: 169 SWNSVLGGLIRNEEISRSVQFFDEMP----DKDLVSWNLMLEGYVRAGDLDVASAFFSRI 224

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
             P+      L++GY   G+M +AR +FDR  + + V WN ++SGY+  ++   A  LF 
Sbjct: 225 PSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFI 284

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M      +++ +  +++S     G L+  K V          D+V   +AL+  Y K  
Sbjct: 285 EMPE----KNSISWTTMVSGFVRSGKLQEAKDVLSKMPS----DNVGAKTALMHGYLKSN 336

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV---- 409
           +  DA +LF  + V D +  NTMI+ Y  CG +++A  +F+ MPNK +ISWN+MI     
Sbjct: 337 LIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQ 396

Query: 410 ---------------------------GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                                      G  QNG  +EAL  F  M +     D  + A  
Sbjct: 397 GGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACC 456

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +SA AN+++L++G Q  + +   G  SD     +L+  Y KCG
Sbjct: 457 LSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCG 499



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 229/457 (50%), Gaps = 52/457 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L+ Y+R G+   A   F  +P  N  SW  ++ G+ + G   ++ +LF+ MP++N  
Sbjct: 202 NLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVV 261

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN+L+SG+ +  +++ A  LF +MP +N+I+W +M+  +VR+G  +EA  +  ++ SD 
Sbjct: 262 AWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDN 321

Query: 165 V--ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           V  +      ++ + +I         +  +Q+   I+V     D+V  +++++ Y +CG 
Sbjct: 322 VGAKTALMHGYLKSNLI---------DDARQLFDGIVVR----DAVCWNTMISGYVQCGM 368

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
            + A  +   M   D    + +I+G A  G++  A  +F +    ++V WNS+ISG++ N
Sbjct: 369 LDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQN 428

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               EAL  F  MRR+    D  T A  LSA ++L  L+ G+Q H    + G I D    
Sbjct: 429 GLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPG 488

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +AL+  Y+K G   +A ++F E+ V D +  N +I  Y+S G                  
Sbjct: 489 NALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNG------------------ 530

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
                      NGS  E + +F  M    +R D+ +L  V+SAC++   ++ G   F   
Sbjct: 531 -----------NGS--EVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFFN-- 575

Query: 463 TIIGLDSDQIIS---TSLVDFYCKCGFIKMDEYYLMQ 496
           ++I L S + ++   T +VD   + G ++ + + L+Q
Sbjct: 576 SMIKLYSLKPVAEHYTCMVDLLGRAGRLR-EAFELVQ 611


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 219/423 (51%), Gaps = 41/423 (9%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N +++ + K G+ E + ++F+ MPQ+N FS+N ++S   K G+L  A  +F  MP  
Sbjct: 55  FIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEP 114

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +  +WN+M+  + ++    EA+R F +++S   E    + +   + + ACA L  L  G 
Sbjct: 115 DQCSWNAMVSGFAQHDRFEEALRFFVDMHS---EDFVLNEYSFGSALSACAGLTDLNMGI 171

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH+ I  +    D  +GS+LV++Y K                               CG
Sbjct: 172 QIHALISKSRYLLDVYMGSALVDMYSK-------------------------------CG 200

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A+R FD     + V WNS+I+ Y  N    +AL +F  M  NGV  D  TLASV+S
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVS 260

Query: 313 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           AC+S   +  G Q+H    K     +D+++ +AL+D Y+K    ++A  +F  + + + +
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              +M+  Y+    ++ A+ +F  M  K+++SWN++I G +QNG   EA+ LF  + +  
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCKCG 485
           +    ++  ++++ACAN++ L+LG Q   ++   G       +SD  +  SL+D Y KCG
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCG 440

Query: 486 FIK 488
            ++
Sbjct: 441 MVE 443



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 154/556 (27%), Positives = 249/556 (44%), Gaps = 113/556 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S    +++H   +K    +S + I NRL+  Y +CG   DA  +FD M
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQ-FSSEIFIQNRLVDAYGKCGYFEDARKVFDRM 80

Query: 68  PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
           P+RN FS                               WNAM+ GF +    E++L+ F 
Sbjct: 81  PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFV 140

Query: 97  VMPQK----NDFSW-------------NM----------------------LISGFAKAG 117
            M  +    N++S+             NM                      L+  ++K G
Sbjct: 141 DMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCG 200

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            +  A+  F+ M  RN ++WNS+I CY +NG A +A+ +F  +  + VE    D   LA+
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEP---DEITLAS 257

Query: 178 VIGACADLAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           V+ ACA  +A+  G QIH+ ++  +    D VLG++LV++Y KC   N A  V + M   
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           +    ++++ GYA    +  AR +F    + + V WN++I+GY  N E+ EA+ LF  ++
Sbjct: 318 NVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLK 377

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI------DDVIVASALLDTYS 350
           R  +     T  ++L+AC++L  L+ G+Q H    K G         D+ V ++L+D Y 
Sbjct: 378 RESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYM 437

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K GM  D C +F  +   D +  N MI  Y                              
Sbjct: 438 KCGMVEDGCLVFERMVERDVVSWNAMIVGY------------------------------ 467

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDS 469
            +QNG    AL++F  M     + D  ++  V+SAC++   +E G + F  + T +GL  
Sbjct: 468 -AQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAP 526

Query: 470 DQIISTSLVDFYCKCG 485
            +   T +VD   + G
Sbjct: 527 MKDHFTCMVDLLGRAG 542



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 32/315 (10%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+   A ++ +C    +    ++IH+ I+      +  + + LV+ YGKCG F  A +V 
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           + M + + F  +A++S     GK+++A  VF    +     WN+M+SG+  ++   EAL 
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
            F  M     + +  +  S LSAC+ L  L  G Q+H    K   + DV + SAL+D YS
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G+ + A + F  + V + +  N++IT Y                              
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCY------------------------------ 227

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDS 469
             QNG   +AL++F  M    +  D+ +LASV+SACA+ S++  G Q+ ARV       +
Sbjct: 228 -EQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN 286

Query: 470 DQIISTSLVDFYCKC 484
           D ++  +LVD Y KC
Sbjct: 287 DLVLGNALVDMYAKC 301



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 170/393 (43%), Gaps = 73/393 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C +  +I  G Q+H   +K+    + L + N L+ MY +C    +A L+FD M
Sbjct: 255 LASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRM 314

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P RN  S  +M+ G+ +    + +  +F+ M +KN  SWN LI+G               
Sbjct: 315 PLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAG--------------- 359

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                           Y +NG   EAVRLF  L     E +    +    ++ ACA+LA 
Sbjct: 360 ----------------YTQNGENEEAVRLFLLLKR---ESIWPTHYTFGNLLNACANLAD 400

Query: 188 LEYGKQIHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           L+ G+Q H+ IL +G  F S       +G+SL+++Y KCG       V   M E D    
Sbjct: 401 LKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSW 460

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A+I GYA                                N   T AL +F KM  +G  
Sbjct: 461 NAMIVGYAQ-------------------------------NGYGTNALEIFRKMLVSGQK 489

Query: 302 EDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
            D  T+  VLSACS  G +E G++  H    ++G+       + ++D   + G   +A  
Sbjct: 490 PDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEAND 549

Query: 361 LFSELKVY-DTILLNTMITVYSSCGRIEDAKHI 392
           L   + +  D ++  +++      G IE  K++
Sbjct: 550 LIQTMPMQPDNVVWGSLLAACKVHGNIELGKYV 582


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/516 (27%), Positives = 241/516 (46%), Gaps = 104/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLK-KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L SC+   S+   +++H   ++   I+   L + N L+ MY +CG+  +A  +FD +  
Sbjct: 150 VLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKN 209

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------------- 100
           R+  SW +MI  +   G  +++L L+  M                               
Sbjct: 210 RDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHAR 269

Query: 101 ------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                 ++DF  + LI+ +A+ G++ +AR  F  +  ++ + W S++  YV+    REA+
Sbjct: 270 IVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREAL 329

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            L+  ++    E +  D     T +GACA L AL+ GK IHS +                
Sbjct: 330 DLYGRMDH---EGVHADGVTYVTALGACASLGALKEGKAIHSRVF--------------- 371

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WN 273
               +CG F S                +AL++ YA CG+++ AR VF+R     +V  W 
Sbjct: 372 ----ECG-FQSL------------VVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWT 414

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MIS Y       EAL L+ +M   G   +  T ++VL+ACSS G LE G ++HGH    
Sbjct: 415 AMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGH---- 470

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
             +++  +AS                         +  + N ++T+Y+ CG +E AK  F
Sbjct: 471 --VENSELAS-------------------------NVAVQNALVTMYAKCGSLELAKSAF 503

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
                K L+SWN+MI   +Q+G   EALDL+  M    +  D+ ++AS +SACA   SL+
Sbjct: 504 EASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQ 563

Query: 454 LGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
           LG ++ +RV       S  ++ T+LV+ Y +CG ++
Sbjct: 564 LGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLE 599



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/528 (25%), Positives = 233/528 (44%), Gaps = 114/528 (21%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++    LLQ C    S+  GK +H H L+ G   +   + N L+QMY  CG    A   F
Sbjct: 42  VELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQF-LGNLLIQMYGNCGEIHLARAAF 100

Query: 65  DEMPRRNCFS-WNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW------------- 106
                    + +N M+  + K G   ++L+L++ M    P+ +  ++             
Sbjct: 101 QNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSL 160

Query: 107 ------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                   N L++ + K G ++ AR +F+ +  R+A++W SMI 
Sbjct: 161 REAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMIS 220

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y  NGF  EA+ L++++++D +   Q D+    + + AC  L     GK IH+ I+ + 
Sbjct: 221 SYANNGFCDEALDLYQQMDADGI---QPDSITFTSALLACTKLVD---GKAIHARIVSSN 274

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           ++                                 DF  SALI+ YA CG ++ AR+ F+
Sbjct: 275 ME--------------------------------SDFVGSALINMYARCGDVSSARQAFE 302

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           +  +   V W S+++ Y+      EAL L+ +M   GV  D  T  + L AC+SLG L+ 
Sbjct: 303 KIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKE 362

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK +H    + G    ++V +ALL                               T+Y+ 
Sbjct: 363 GKAIHSRVFECG-FQSLVVHTALL-------------------------------TMYAK 390

Query: 383 CGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
           CG ++ A+ +F R    +++  W +MI   +Q G   EAL+L+  M     R ++++ ++
Sbjct: 391 CGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSN 450

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           V++AC++   LE G ++   V    L S+  +  +LV  Y KCG +++
Sbjct: 451 VLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLEL 498



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 18/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L +C    S+ +G+++H   LK     S+L +   L+ MY RCG    A  +F++M
Sbjct: 549 IASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDM 608

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            +R+  SW AM   + + GH ++ L L+  M     + N+ ++  ++ G + AG L    
Sbjct: 609 GQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGV 668

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F +M   + +      +  M+    R+G  R+A  L + +        Q D+    TV
Sbjct: 669 ECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMP------YQPDSVAWLTV 722

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +G+C   +  +  K+      V  LD ++  L S L +++   G    A +V   MKE
Sbjct: 723 LGSCKTHSDADTAKRAARR--VKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKE 778


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 250/532 (46%), Gaps = 89/532 (16%)

Query: 3   TRID---YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           TR+D   YL ++LQ C    +   G  +H H +  G   S L +  +L+  Y++ G+   
Sbjct: 26  TRLDPSLYL-KILQLCIDKKAKKQGHLIHTHLITNG-FGSDLHLNTKLIIFYVKVGDVIA 83

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
           A  +FD MP R+  SW AM+ G+ + G  EK+  LF+ M      + + L+   +K G++
Sbjct: 84  ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKM 143

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           + A  LF  M  R+ ++WN+MI  Y   GFA ++  +F+ +   L   L  D + L +V+
Sbjct: 144 EDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSM---LRGGLVPDCYTLGSVL 200

Query: 180 GACADLAALEYGKQIH---------SHILVNGLDFDS----------------------- 207
            A A+   L    QIH         S+ +V GL  ++                       
Sbjct: 201 RASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLF 260

Query: 208 ---------------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA--N 250
                           +G++L+++Y K G+   A +  + M+E +    ++LISGYA   
Sbjct: 261 SSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHG 320

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G M  AR VFD     +   W++M+SGY+      EA+ LF +M   GV  +   +AS+
Sbjct: 321 YGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASL 380

Query: 311 LSACSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           ++ACS  G++ + G QVHG   K G++ DV V +AL                        
Sbjct: 381 ITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTAL------------------------ 416

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                  +  Y S G + +A+ +F  MP+ +++SW S++VG S +G+P E L+++  M +
Sbjct: 417 -------VHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ 469

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             +  ++ + A+V S+C  +    LG QV   +   G +    ++ SL+  +
Sbjct: 470 EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMF 521



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 197/413 (47%), Gaps = 68/413 (16%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG--ELKTARTLFNDMPRRN 133
           NA+I+ + K G  E + + F+ M +KN  SW  LISG+AK G   +  AR +F++M  RN
Sbjct: 279 NALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRN 338

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL-EYGK 192
             +W++M+  YVR G   EAV LF ++    VE    + F++A++I AC+    + + G 
Sbjct: 339 EASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP---NGFMVASLITACSRSGYMADEGF 395

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H  ++  G+  D  +G++LV+ YG                               + G
Sbjct: 396 QVHGFVVKTGILGDVYVGTALVHFYG-------------------------------SIG 424

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            + +A+++F+   D + V W S++ GY  +    E L ++ +MR+ GV  + +T A+V S
Sbjct: 425 LVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS 484

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C  L     G QV GH  + G  D V VA++L+  +S      +AC +F  +   D I 
Sbjct: 485 SCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIIS 544

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N MI+ Y                               + +G   E+L  F  M  L  
Sbjct: 545 WNAMISAY-------------------------------AHHGLCRESLRCFHWMRHLHN 573

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             +  +L+S++S C+++ +L+ G  +   V  +GLDS+  I  +L+  Y + G
Sbjct: 574 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAG 626



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 214/482 (44%), Gaps = 79/482 (16%)

Query: 8   LARLLQSCN-THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A L+ +C+ + +    G Q+H   +K GIL     +   L+  Y   G   +A  LF+E
Sbjct: 377 VASLITACSRSGYMADEGFQVHGFVVKTGILGDVY-VGTALVHFYGSIGLVYNAQKLFEE 435

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSW-------------- 106
           MP  N  SW +++ G+   G+  + L ++  M Q      +N F+               
Sbjct: 436 MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLG 495

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N LIS F+    ++ A  +F+ M   + I+WN+MI  Y  +
Sbjct: 496 YQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHH 555

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G  RE++R F  +     E    ++  L++++  C+ +  L++G+ IH  ++  GLD + 
Sbjct: 556 GLCRESLRCFHWMRHLHNE---TNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNV 612

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD---RT 264
            + ++L+ LY + G    A  V   M E D    +++++ Y   GK  D  ++     + 
Sbjct: 613 CICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQM 672

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                V WN++I G+  N E  EA+  +  +R  G+  +  T+ S L+A ++L  LE G+
Sbjct: 673 GKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQ 731

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+HG   K+G   D+ V +A +D Y K                               CG
Sbjct: 732 QLHGLVIKLGFESDLHVTNAAMDMYGK-------------------------------CG 760

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            + D   +     N+S +SWN +I   +++G   +A + F  M KL  + D  +  S++S
Sbjct: 761 EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 820

Query: 445 AC 446
           AC
Sbjct: 821 AC 822



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 165/398 (41%), Gaps = 81/398 (20%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D  +   ++  C D  A + G  IH+H++ NG   D  L + L+  Y K GD  +A  V 
Sbjct: 29  DPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVF 88

Query: 231 NMMKEPDDFCLSALISGYAN-------------------------------CGKMNDARR 259
           + M E      +A++SGY+                                CGKM DA  
Sbjct: 89  DGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASY 148

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F    +   V WN+MI GY       ++  +F  M R G++ D  TL SVL A +  G 
Sbjct: 149 LFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGG 208

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD----TILL-- 373
           L    Q+HG   ++G     IV   L++ Y+K G    A  L   +   D    T L+  
Sbjct: 209 LIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITG 268

Query: 374 ----------NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP------ 417
                     N +I +Y+  G IEDAK  F  M  K++ISW S+I G +++G        
Sbjct: 269 YAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHAR 328

Query: 418 ---------------------------IEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                                       EA+ LFC M  L +  + F +AS+I+AC+   
Sbjct: 329 YVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG 388

Query: 451 SL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            + + G QV   V   G+  D  + T+LV FY   G +
Sbjct: 389 YMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLV 426



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 212/474 (44%), Gaps = 78/474 (16%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLI 110
           G+   A  +FDEM  RN  SW+ M+ G++++G  E+++ LF  M     + N F    LI
Sbjct: 322 GHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLI 381

Query: 111 SGFAKAGELK------------------------------------TARTLFNDMPRRNA 134
           +  +++G +                                      A+ LF +MP  N 
Sbjct: 382 TACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNV 441

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           ++W S++  Y  +G   E + +++ +  + V   Q      ATV  +C  L     G Q+
Sbjct: 442 VSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQN---TFATVTSSCGLLEDQVLGYQV 498

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
             HI+  G +    + +SL++++        A  V + M E D    +A+IS YA+ G  
Sbjct: 499 LGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC 558

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
                                           E+L  FH MR      +++TL+S+LS C
Sbjct: 559 R-------------------------------ESLRCFHWMRHLHNETNSTTLSSLLSVC 587

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           SS+  L+ G+ +HG   K+G+  +V + + LL  YS+ G   DA  +F  +   D I  N
Sbjct: 588 SSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 647

Query: 375 TMITVYSSCGRIEDAKHIFR---TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           +M+  Y   G+  D   I      M     ++WN++I G ++N  P EA+  +  + +  
Sbjct: 648 SMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKG 707

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  +  ++ S ++A AN++ LE G+Q+   V  +G +SD  ++ + +D Y KCG
Sbjct: 708 IPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 760



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 173/430 (40%), Gaps = 102/430 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +  SC       +G Q+  H ++ G  +S + +AN L+ M+    +  +A  +FD M
Sbjct: 479 FATVTSSCGLLEDQVLGYQVLGHIIQYGFEDS-VSVANSLISMFSSFSSVEEACYVFDHM 537

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------KNDFSW-- 106
              +  SWNAMI  +   G   +SL+ F+ M                      ++  W  
Sbjct: 538 NECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR 597

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ +++AG  + A  +F  M  R+ I+WNSM+ CYV++G
Sbjct: 598 GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDG 657

Query: 149 FAREAVRLFKEL--------------------NSDLVERLQCDA----------FILATV 178
              + +++  EL                    N +  E ++             +I    
Sbjct: 658 KCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS 717

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + A A+LA LE G+Q+H  ++  G + D  + ++ +++YGKCG+    + VL M+ +P  
Sbjct: 718 LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEM---HDVLKMLPQP-- 772

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                                      + S + WN +IS +  +    +A   FH+M + 
Sbjct: 773 --------------------------INRSRLSWNILISAFARHGCFQKARETFHEMLKL 806

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSD 357
           G   D  T  S+LSAC+  G ++ G   +    +  GV   +     ++D   + G  S 
Sbjct: 807 GPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSH 866

Query: 358 ACKLFSELKV 367
           A     E+ V
Sbjct: 867 AEGFIKEMPV 876



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 83/150 (55%)

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           V+  +A++  YS+ G    A  LFS+++       + ++  +S CG++EDA ++F TM  
Sbjct: 96  VVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASYLFGTMME 155

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           + ++SWN+MI G +  G   ++  +F +M +  L  D ++L SV+ A A    L +  Q+
Sbjct: 156 RDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQI 215

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +T +G  S  I++  L++ Y K G ++
Sbjct: 216 HGIITQLGYGSYDIVTGLLINAYAKNGSLR 245


>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 921

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 226/477 (47%), Gaps = 66/477 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C    S  +  QLH H +K   L +   I N L+ MY++CG  T A  +F  +   +
Sbjct: 149 MKACGCLASTRLALQLHAHVIKLH-LGAQTCIQNSLVDMYIKCGAITLAETIFLNIESPS 207

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
            F WN+M                               I G+++      A  +F  MP 
Sbjct: 208 LFCWNSM-------------------------------IYGYSQLYGPYEALHVFTRMPE 236

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+ ++WN++I  + + G     +  F E+ +      + +     +V+ ACA ++ L++G
Sbjct: 237 RDHVSWNTLISVFSQYGHGIRCLSTFVEMCN---LGFKPNFMTYGSVLSACASISDLKWG 293

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H+ IL      D+ LGS L+++Y KCG    A +V N + E +    +  ISG A  
Sbjct: 294 AHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCFISGVAQF 353

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G  +D                               AL LF++MR+  V+ D  TLA++L
Sbjct: 354 GLGDD-------------------------------ALALFNQMRQASVVLDEFTLATIL 382

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
             CS   +   G+ +HG+A K G+   V V +A++  Y++ G    A   F  + + DTI
Sbjct: 383 GVCSGQNYAASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTI 442

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
               MIT +S  G I+ A+  F  MP +++I+WNSM+    Q+G   E + L+  M    
Sbjct: 443 SWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKA 502

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ D  + A+ I ACA++++++LG QV + VT  GL SD  ++ S+V  Y +CG IK
Sbjct: 503 VKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIK 559



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 175/399 (43%), Gaps = 75/399 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C+  +    G+ LH + +K G ++S++P+ N ++ MY RCG+           
Sbjct: 378 LATILGVCSGQNYAASGELLHGYAIKSG-MDSSVPVGNAIITMYARCGD----------- 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                EK+   F  MP ++  SW  +I+ F++ G++  AR  F+
Sbjct: 426 --------------------TEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFD 465

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP RN I WNSM+  Y+++GF+ E ++L+  + S  V+    D    AT I ACADLA 
Sbjct: 466 MMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKP---DWVTFATSIRACADLAT 522

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           ++ G Q+ SH+   GL  D  + +S+V +Y +C                           
Sbjct: 523 IKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRC--------------------------- 555

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
               G++ +AR+VFD     + + WN+M++ +  N    +A+  +  M R     D  + 
Sbjct: 556 ----GQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEAMLRTECKPDHISY 611

Query: 308 ASVLS-ACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDT---YSKRGMPSDACKLF 362
            +VLS      G L   K  + G   K     +  V  ALL     +    +   A K  
Sbjct: 612 VAVLSDLLGRAGLLNQAKNLIDGMPFK----PNATVWGALLGACRIHHDSILAETAAKKL 667

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            EL V D+     +  +Y+  G +E+   + + M  K +
Sbjct: 668 MELNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGI 706



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 6/301 (1%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            +++H+ ++++GLD    L ++L+++Y  CG  + A +V       + F  + ++  + +
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHVYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 251 CGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE----DA 304
            G+M +A  +FD        SV W +MISGY  N     ++  F  M R+   +    D 
Sbjct: 83  SGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSIKTFMSMLRDSNHDIQNCDP 142

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            +    + AC  L       Q+H H  K+ +     + ++L+D Y K G  + A  +F  
Sbjct: 143 FSYTCTMKACGCLASTRLALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETIFLN 202

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           ++       N+MI  YS      +A H+F  MP +  +SWN++I   SQ G  I  L  F
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTF 262

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M  L  + +  +  SV+SACA+IS L+ G  + AR+  +    D  + + L+D Y KC
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322

Query: 485 G 485
           G
Sbjct: 323 G 323



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
            +++H      G+   + + + LL  YS  GM  DA ++F E    +    NTM+  +  
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHVYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 383 CGRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNM---NKLDLR-MDK 436
            GR+ +A+++F  MP   +  +SW +MI G  QNG P  ++  F +M   +  D++  D 
Sbjct: 83  SGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSIKTFMSMLRDSNHDIQNCDP 142

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           FS    + AC  ++S  L  Q+ A V  + L +   I  SLVD Y KCG I + E
Sbjct: 143 FSYTCTMKACGCLASTRLALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAE 197


>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
          Length = 841

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 223/463 (48%), Gaps = 51/463 (11%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G   +A  LFDEMPRRN  SWN M+    + G  E +  LF+ MP +N++SW +++S + 
Sbjct: 56  GRLAEARRLFDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYV 115

Query: 115 KAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           +AGEL  AR L + MP  + A  +N+MI  Y +NG   +A+ L +E+ +        D  
Sbjct: 116 RAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAP-------DIV 168

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
              +V+G       +    Q    +     D D V  + ++  Y + GD + A+   + +
Sbjct: 169 SWNSVLGGLIRNEEISRSVQFFDEMP----DKDLVSWNLMLEGYVRAGDLDVASAFFSRI 224

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
             P+      L++GY   G+M +AR +FDR  + + V WN ++SGY+  ++   A  LF 
Sbjct: 225 PSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFI 284

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M      +++ +  +++S     G L+  K V          D+V   +AL+  Y K  
Sbjct: 285 EMPE----KNSISWTTMVSGFVRSGKLQEAKDVLSKMPS----DNVGAKTALMHGYLKSN 336

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV---- 409
           +  DA +LF  + V D +  NTMI+ Y  CG +++A  +F+ MPNK +ISWN+MI     
Sbjct: 337 LIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQ 396

Query: 410 ---------------------------GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                                      G  QNG  +EAL  F  M +     D  + A  
Sbjct: 397 GGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACC 456

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +SA AN+++L++G Q  + +   G  SD     +L+  Y KCG
Sbjct: 457 LSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCG 499



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 229/457 (50%), Gaps = 52/457 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L+ Y+R G+   A   F  +P  N  SW  ++ G+ + G   ++ +LF+ MP++N  
Sbjct: 202 NLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVV 261

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN+L+SG+ +  +++ A  LF +MP +N+I+W +M+  +VR+G  +EA  +  ++ SD 
Sbjct: 262 AWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDN 321

Query: 165 V--ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           V  +      ++ + +I         +  +Q+   I+V     D+V  +++++ Y +CG 
Sbjct: 322 VGAKTALMHGYLKSNLI---------DDARQLFDGIVVR----DAVCWNTMISGYVQCGM 368

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
            + A  +   M   D    + +I+G A  G++  A  +F +    ++V WNS+ISG++ N
Sbjct: 369 LDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQN 428

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               EAL  F  MRR+    D  T A  LSA ++L  L+ G+Q H    + G I D    
Sbjct: 429 GLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPG 488

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +AL+  Y+K G   +A ++F E+ V D +  N +I  Y+S G                  
Sbjct: 489 NALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNG------------------ 530

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
                      NGS  E + +F  M    +R D+ +L  V+SAC++   ++ G   F   
Sbjct: 531 -----------NGS--EVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFFN-- 575

Query: 463 TIIGLDSDQIIS---TSLVDFYCKCGFIKMDEYYLMQ 496
           ++I L S + ++   T +VD   + G ++ + + L+Q
Sbjct: 576 SMIKLYSLKPVAEHYTCMVDLLGRAGRLR-EAFELVQ 611


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 219/449 (48%), Gaps = 39/449 (8%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEG 81
           G   H H LK G   S   + N ++ MY R G    A  +FDE+P   R    WNAM+ G
Sbjct: 114 GIGFHAHVLKLG-HGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSG 172

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           + K   + ++  LF+VMP++N  +W  +++G+AK  +L+ AR  F+ MP R+ ++WN+M+
Sbjct: 173 YWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAML 232

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y +NG A E +RLF E+ +  +E    D     TVI AC+          +   +   
Sbjct: 233 SGYAQNGLAEEVLRLFDEMVNAGIEP---DETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKMNDARRV 260
            +  +  + ++L+++Y KCG   +A ++ + +    +    +A+IS Y   G ++ AR +
Sbjct: 290 QIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSAREL 349

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGF 319
           F+     + V WNSMI+GY  N +   A+ LF +M     +  D  T+ SV+SAC  LG 
Sbjct: 350 FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGA 409

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           LE G  V     +  +   +   +A++  YS+ G   DA ++F E+   D +  NT+I+ 
Sbjct: 410 LELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLIS- 468

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
                                         G + +G  +EA++L   M +  +  D+ + 
Sbjct: 469 ------------------------------GFAAHGHGVEAINLMSTMKEGGIEPDRVTF 498

Query: 440 ASVISACANISSLELGEQVFARVTIIGLD 468
             V++AC++   LE G +VF  +    +D
Sbjct: 499 IGVLTACSHAGLLEEGRKVFESIKDPAID 527



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 48/266 (18%)

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F+ T + +  ++ SM+  Y    +  + +L+F  M+  GV  DA     ++ +  + G 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGI 115

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD---------- 369
                  H H  K+G   D  V +A++D Y++ G    A K+F E+  Y+          
Sbjct: 116 -----GFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 370 -----------------------TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                   I    M+T Y+    +E A+  F  MP +S++SWN+
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNA 230

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           M+ G +QNG   E L LF  M    +  D+ +  +VISAC++      G+   A   +  
Sbjct: 231 MLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSS-----RGDPCLAASLVRT 285

Query: 467 LDSDQI-----ISTSLVDFYCKCGFI 487
           L   QI     + T+L+D Y KCG I
Sbjct: 286 LHQKQIQLNCFVRTALLDMYAKCGSI 311



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 106/258 (41%), Gaps = 48/258 (18%)

Query: 47  LLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS 105
           LL MY +CG+   A  +FDE+   RN  +WNAMI  + ++G+ + + +LFN MP +N  +
Sbjct: 301 LLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVT 360

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIA-----------------------W----- 137
           WN +I+G+A+ G+   A  LF +M     +                        W     
Sbjct: 361 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL 420

Query: 138 ------------NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
                       N+MI  Y R G   +A R+F+E+ +        D     T+I   A  
Sbjct: 421 TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-------DVVSYNTLISGFAAH 473

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
                   + S +   G++ D V    ++      G      +V   +K+P     + ++
Sbjct: 474 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMV 533

Query: 246 SGYANCGKMNDARRVFDR 263
                 G++ DA+R  +R
Sbjct: 534 DLLGRVGELEDAKRTMER 551



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 131/315 (41%), Gaps = 53/315 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C    ++ +G  + + FL +  +  ++   N ++ MY RCG+  DA  +F EM
Sbjct: 397 MVSVISACGHLGALELGNWV-VRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 455

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  S+N +I GF   GH  +++ L + M                K G ++  R  F 
Sbjct: 456 ATRDVVSYNTLISGFAAHGHGVEAINLMSTM----------------KEGGIEPDRVTFI 499

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +          +  C    G   E  ++F+ +    ++   C   +L  V G   D   
Sbjct: 500 GV----------LTAC-SHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRV-GELEDAKR 547

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
                 +  H  V G    S+L +S ++   + G+  +AN++  +  EPD+     L+S 
Sbjct: 548 TMERMPMEPHAGVYG----SLLNASRIHKQVELGEL-AANKLFEL--EPDNSGNFILLSN 600

Query: 248 -YANCGKMNDARRVFD--------RTTDTSSVMWNSMISGYI------SNNEDTEALL-- 290
            YA+ G+  D  R+ +        +TT  S V +   +  +I        ++D   LL  
Sbjct: 601 IYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIE 660

Query: 291 LFHKMRRNGVLEDAS 305
           L  KMR  G + D S
Sbjct: 661 LRKKMREAGYIADKS 675


>gi|302780459|ref|XP_002972004.1| hypothetical protein SELMODRAFT_50691 [Selaginella moellendorffii]
 gi|300160303|gb|EFJ26921.1| hypothetical protein SELMODRAFT_50691 [Selaginella moellendorffii]
          Length = 513

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/488 (28%), Positives = 228/488 (46%), Gaps = 73/488 (14%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D LA LL+SC  HH +  G+++H   L       +  +AN L+ MY +C +  DA     
Sbjct: 1   DQLAALLRSCGDHHDLEAGRRIHAQILGSAHHRGSRYLANTLIHMYGKCASLADAR---- 56

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                                       +F  MP  N FSW ++ S  A+ G L  A+  
Sbjct: 57  ---------------------------SVFQSMPDPNLFSWTIITSIHARHGLLDDAKRF 89

Query: 126 FNDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           F+ MP RN +A    W  M+  Y+++G  REA+ L  +++   +E LQ +A   ++V+ A
Sbjct: 90  FDAMPERNVVANVVSWTVMVSIYIQHGKNREALGLLMKMD---LEGLQPNACTFSSVLTA 146

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA+L +LE GK +H     +GL  D+V  ++L+N+Y KC     A ++ + +    D   
Sbjct: 147 CANLGSLEMGKAVHRRAAASGLVSDTV-QNALINMYAKCQRLGEAKRLFDQIPVKSDVSW 205

Query: 242 SALISGY--ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED-TEALLLFHKMRRN 298
           +A+I+ Y  A  G +  AR+ F+         WN +I  Y    +D TEAL+++ +M+  
Sbjct: 206 NAIIAAYMYAKLGDVELARKAFEEMAVKDEASWNGIIIAYAQYGDDVTEALVIYERMKSA 265

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           GV  +A T  +VL+AC   G LE G++++   CK                          
Sbjct: 266 GVQGNAITFTNVLTACLVSGSLEAGRRIYQDLCK-------------------------- 299

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                EL+  D I+   ++ +++  G +  A+H+F     +++ISWN M++  SQNG   
Sbjct: 300 ----HELEKTDAIVGTVLVNMFARFGDLVTARHVFENNQQRNVISWNGMVMAYSQNGYYN 355

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSL 477
           EA+D+F  +    ++ D  S   +  A ++  SL+ G   F  +    GL     +  SL
Sbjct: 356 EAVDVFHRLFLEGIQGDNISFTCIFHALSHAGSLDRGRDYFLSMGPDHGLTPTLDLYVSL 415

Query: 478 VDFYCKCG 485
           VD   + G
Sbjct: 416 VDLLGRSG 423


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 230/481 (47%), Gaps = 74/481 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRL-LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           K LH   +  G+ N TL +   +        G+   A  +FD++P+ N F +N++I G+ 
Sbjct: 5   KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 64

Query: 84  KLGHKEKSLQLFNVMP----QKNDFS--------------W------------------- 106
                  ++ LF  M       N+F+              W                   
Sbjct: 65  NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LI+ +   G +  AR LF+D+  +  ++WNSMI  Y   G  +EA  LF+++    
Sbjct: 125 VQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMRE-- 182

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++ D F    ++  C+    L+ G+ +H  I + G+  D ++ ++LV++Y KCG+ +
Sbjct: 183 -WGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLH 241

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
           SA  + +  +E +    +++IS YA  G +  AR++FD+    + V WNSMIS Y+   +
Sbjct: 242 SAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 301

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL LF+KMR + V+ D +TL S+L+ACS LG L  GK++H +               
Sbjct: 302 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNY--------------- 346

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
                           + S    Y   L N++I +Y+ CG +  A  IF  MP K+L+SW
Sbjct: 347 ----------------ILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSW 390

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N +I  L+ +G  +EA+ LF  M       D+ +L  ++SAC++   +++G   F R+ +
Sbjct: 391 NVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGV 450

Query: 465 I 465
           I
Sbjct: 451 I 451



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 185/370 (50%), Gaps = 34/370 (9%)

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           AG+L+ A+ +F+ +P+ N   +NS+I  Y  +    +AV LF+ +   +   L  + F L
Sbjct: 35  AGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRM---ICSGLSPNEFTL 91

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             V+ AC   +A          +LV+GL     +GS +                      
Sbjct: 92  PFVLKACGCKSAY------WEAVLVHGLAIKLGIGSLV---------------------- 123

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
              F  +ALI+ Y  CG ++ AR++FD  TD + V WNSMI GY       EA LLF KM
Sbjct: 124 ---FVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKM 180

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R  G+  D  T  ++LS CS    L+ G+ VH      GV  D+IV +AL+D Y+K G  
Sbjct: 181 REWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNL 240

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
             A  +F   +  + +   +MI+ Y+  G IE A+ IF  MP K+++SWNSMI    + G
Sbjct: 241 HSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREG 300

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EALDLF  M    +  D+ +L S+++AC+ +  L +G+++   +          +  
Sbjct: 301 QYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYN 360

Query: 476 SLVDFYCKCG 485
           SL+D Y KCG
Sbjct: 361 SLIDMYAKCG 370



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 70/362 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA+++ + K G+   +  +F+   +KN  SW  +IS +A+ G ++ AR +F+ MP +N +
Sbjct: 228 NALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVV 287

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WNSMI CY+R G  REA+ LF ++ +    R+  D   L +++ AC+ L  L  GK+IH
Sbjct: 288 SWNSMISCYLREGQYREALDLFNKMRN---SRVVPDEATLVSILAACSQLGDLVMGKKIH 344

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++IL N   +   L +SL+++Y KCG   +A                             
Sbjct: 345 NYILSNKGAYGVTLYNSLIDMYAKCGPVVTALD--------------------------- 377

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
               +F      + V WN +I     +    EA+ LF +M+ +G L D  TL  +LSACS
Sbjct: 378 ----IFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACS 433

Query: 316 SLGFLEHG--------------KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD---- 357
             G ++ G              +++  +AC V ++    +    ++   +  M  D    
Sbjct: 434 HSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVW 493

Query: 358 -----ACKLFSELKVYDTIL------------LNTMIT-VYSSCGRIEDAKHIFRTMPNK 399
                AC++   +++   IL            L  +I+ +Y    R ED K I + M ++
Sbjct: 494 GALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDR 553

Query: 400 SL 401
            +
Sbjct: 554 GI 555



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 33/251 (13%)

Query: 237 DDFCLSALISGYA--NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           +   L  LIS  A  + G +  A+R+FD+    +  M+NS+I GY ++++  +A+LLF +
Sbjct: 19  ETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRR 78

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M  +G+  +  TL  VL AC           VHG A K+G+   V V +AL         
Sbjct: 79  MICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNAL--------- 129

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                 I VY  CG I  A+ +F  + +K+L+SWNSMI G +  
Sbjct: 130 ----------------------IAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHM 167

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G+  EA  LF  M +  +  D F+  +++S C+    L+LG  V   + I G+  D I+ 
Sbjct: 168 GNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVR 227

Query: 475 TSLVDFYCKCG 485
            +LVD Y KCG
Sbjct: 228 NALVDMYAKCG 238


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 198/421 (47%), Gaps = 34/421 (8%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +P    F +N ++  +  +     + ++F+ +PQ N FSWN L+  ++KAG +    + F
Sbjct: 36  LPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTF 95

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             +P R+ + WN +I  Y  +G    AV+ +  +  D    L      L T++   +   
Sbjct: 96  EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLT--RVTLMTMLKLSSSNG 153

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            +  GKQIH  ++  G +   ++GS L+ +Y   G  + A +V   + + +    ++L+ 
Sbjct: 154 HVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMG 213

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           G   CG + DA ++F R  +  SV W +MI G   N    EA+  F +M+  G+  D   
Sbjct: 214 GLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYP 272

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             SVL AC  LG +  GKQ+H    +    D + V SAL+D Y K               
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK--------------- 317

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                           C  +  AK +F  M  K+++SW +M+VG  Q G   EA+ +F +
Sbjct: 318 ----------------CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLD 361

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M +  +  D ++L   ISACAN+SSLE G Q   +    GL     +S SLV  Y KCG 
Sbjct: 362 MQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGD 421

Query: 487 I 487
           I
Sbjct: 422 I 422



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 206/462 (44%), Gaps = 101/462 (21%)

Query: 3   TRIDYLARL-LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           TR+  +  L L S N H  + +GKQ+H   +K G   S L + + LL MY   G  +DA 
Sbjct: 138 TRVTLMTMLKLSSSNGH--VSLGKQIHGQVIKLG-FESYLLVGSPLLYMYANVGCISDAK 194

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            +F  +  RN   +N+++ G +  G  E +LQLF  M +K+  SW  +I G A+      
Sbjct: 195 KVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQ------ 247

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
                                    NG A+EA+  F+E+    V+ L+ D +   +V+ A
Sbjct: 248 -------------------------NGLAKEAIECFREMK---VQGLKMDQYPFGSVLPA 279

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C  L A+  GKQIH+ I+         +GS+L+++Y KC   + A  V + MK+ +    
Sbjct: 280 CGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 339

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A++ GY   G+                                 EA+ +F  M+R+G+ 
Sbjct: 340 TAMVVGYGQTGRAE-------------------------------EAVKIFLDMQRSGID 368

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  TL   +SAC+++  LE G Q HG A   G+I  V V+++L+  Y K G   D+ +L
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F+E+ V D +    M++ Y+  GR                                +E +
Sbjct: 429 FNEMNVRDAVSWTAMVSAYAQFGR-------------------------------AVETI 457

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
            LF  M +  L+ D  +L  VISAC+    +E G++ F  +T
Sbjct: 458 QLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMT 499



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 47/289 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              +L +C    +I+ GKQ+H   ++       + + + L+ MY +C     A  +FD M
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTN-FQDHIYVGSALIDMYCKCKCLHYAKTVFDRM 331

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------------NV--MPQKN 102
            ++N  SW AM+ G+ + G  E+++++F                       NV  + + +
Sbjct: 332 KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391

Query: 103 DFSWNMLISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
            F    + SG              + K G++  +  LFN+M  R+A++W +M+  Y + G
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A E ++LF ++   +   L+ D   L  VI AC+    +E G Q +  ++ +       
Sbjct: 452 RAVETIQLFDKM---VQHGLKPDGVTLTGVISACSRAGLVEKG-QRYFKLMTSEYGIVPS 507

Query: 209 LG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKM 254
           +G  S +++L+ + G    A + +N M   PD    + L+S   N G +
Sbjct: 508 IGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNL 556



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 19/240 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L + + +C    S+  G Q H   +  G+++  + ++N L+ +Y +CG+  D+  LF+EM
Sbjct: 374 LGQAISACANVSSLEEGSQFHGKAITSGLIH-YVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             R+  SW AM+  + + G   +++QLF+ M Q     +  +   +IS  ++AG ++  +
Sbjct: 433 NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ 492

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I      ++ MI  + R+G   EA+R    +          DA    T+
Sbjct: 493 RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP------FPPDAIGWTTL 546

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKEPD 237
           + AC +   LE GK     ++   LD     G +L+ ++Y   G ++S  Q+   M+E +
Sbjct: 547 LSACRNKGNLEIGKWAAESLIE--LDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKN 604



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 78/165 (47%), Gaps = 1/165 (0%)

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K +HG+  +     +  + + ++  Y+     + A ++F  +   +    N ++  YS  
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLASV 442
           G I + +  F  +P++  ++WN +I G S +G    A+  +  M +     + + +L ++
Sbjct: 86  GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +   ++   + LG+Q+  +V  +G +S  ++ + L+  Y   G I
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 224/475 (47%), Gaps = 105/475 (22%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G+Q H   +K         + + LL MY + G   +A  +FD MP RN  +W  MI
Sbjct: 126 SIFFGQQAHAVAIKMACFYDVF-VGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMI 184

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------------------- 106
            G+       ++ ++F +M ++    N+F++                             
Sbjct: 185 SGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLL 244

Query: 107 ------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                 N L++ +AK G L  +  +F     +N+I W++MI  Y ++G + +A++LF  +
Sbjct: 245 VFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRM 304

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
           +      +    F L  V+ AC+D  A+E GKQ+H+++L   L F+S L           
Sbjct: 305 H---FAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLL--KLGFESQL----------- 348

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                             + ++AL+  YA  G   DAR+ F+       V+W SMI+GY+
Sbjct: 349 ------------------YIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYV 390

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            N E+ +AL L+ +M+  G+L +  T+ASVL ACS+L   + G+Q+H    K G+  +V 
Sbjct: 391 QNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVT 450

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           + SAL                                T+Y+ CG +E+   +FR MP + 
Sbjct: 451 IGSAL-------------------------------STMYAKCGNLEEGNIVFRRMPERD 479

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           +ISWN+MI GLSQNG   EAL+LF  M + D + D  +  +V+SAC+++  ++ G
Sbjct: 480 IISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSG 534



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 234/511 (45%), Gaps = 107/511 (20%)

Query: 17  THH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           TH  S+  G+ LH   +K    +S + +AN L+  Y +C +   A L+FD +  ++  SW
Sbjct: 18  THQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISW 77

Query: 76  NAMIEGFMKLGHKEKS--LQLF------NVMPQKNDFSW--------------------- 106
           N +I G+ + G    S  ++LF      N++P  + FS                      
Sbjct: 78  NCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVA 137

Query: 107 ------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                       + L++ + KAG L  AR +F+ MP RN + W +MI  Y     A EA 
Sbjct: 138 IKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAF 197

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            +F+ +     E    + F   +V+ A A    ++ GKQIH   +  GL         LV
Sbjct: 198 EVFELMRR---EEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGL---------LV 245

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            L            +LN           AL++ YA CG ++D+ +VF+ + D +S+ W++
Sbjct: 246 FL-----------SILN-----------ALVTMYAKCGSLDDSLQVFEMSNDKNSITWSA 283

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MI+GY  + +  +AL LF +M   G+     TL  VL+ACS    +E GKQVH +  K+G
Sbjct: 284 MITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLG 343

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
               + + +AL+D Y+K G+  DA K F+ L+  D +L  +MI                 
Sbjct: 344 FESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIA---------------- 387

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
                          G  QNG   +AL L+C M    +  ++ ++ASV+ AC+N+++ + 
Sbjct: 388 ---------------GYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQ 432

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G Q+ AR    GL  +  I ++L   Y KCG
Sbjct: 433 GRQIHARTIKYGLGLEVTIGSALSTMYAKCG 463



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 43/223 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+   ++  GKQ+H + LK G   S L I   L+ MY + G   DA   F+ +
Sbjct: 316 LVGVLNACSDACAVEEGKQVHNYLLKLG-FESQLYIMTALVDMYAKSGVTEDARKGFNYL 374

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS---------------- 105
            + +   W +MI G+++ G  E +L L+       ++P +   +                
Sbjct: 375 QQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGR 434

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + L + +AK G L+    +F  MP R+ I+WN+MI    +NG
Sbjct: 435 QIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNG 494

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           + +EA+ LF+E+     +  + D      V+ AC+ +  ++ G
Sbjct: 495 YGKEALELFEEMRQ---QDTKPDDVTFVNVLSACSHMGLVDSG 534



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 21/238 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C+   +   G+Q+H   +K G L   + I + L  MY +CGN  +  ++F  M
Sbjct: 417 MASVLKACSNLAAFDQGRQIHARTIKYG-LGLEVTIGSALSTMYAKCGNLEEGNIVFRRM 475

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTA- 122
           P R+  SWNAMI G  + G+ +++L+LF  M Q+    +D ++  ++S  +  G + +  
Sbjct: 476 PERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGW 535

Query: 123 ---RTLFND---MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              R +F++   +P+    A   M+    R G   EA      + S  ++   C   IL 
Sbjct: 536 LYFRMMFDEFGLLPKVEHYA--CMVDVLSRAGKLYEAKEF---IESTTIDHGLCLWRIL- 589

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             +GAC +    E G      ++  G   +S     L  +Y   G      +V +MMK
Sbjct: 590 --LGACRNYRNYELGAYAGEKLMELGSQ-ESSAYVLLSGIYTALGRPEDVERVRSMMK 644



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA--LDLFCNMNK 429
           L N++I  Y+ C  +  AK +F  + NK +ISWN +I G SQ G    +  ++LF  M  
Sbjct: 45  LANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRA 104

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            ++  +  + + + +A +N+SS+  G+Q  A    +    D  + +SL++ YCK G +
Sbjct: 105 DNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLL 162


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 220/472 (46%), Gaps = 71/472 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y R G   DA LLFD+MP R+  SW A++  +   G    +  +F+ MP++N  
Sbjct: 42  NALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN L+S + +A   + A  LF  MP +NA+++ ++I    + G  REA  +++E+    
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELVYEEMPQ-- 159

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                                   ++   + S+ L+ G              Y + G+  
Sbjct: 160 ------------------------QWRDPVGSNALMAG--------------YLRVGELA 181

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V   M   D    SA++ G    G +++ARRVFD   + S V W SMI GY+    
Sbjct: 182 MALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGM 241

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
            ++ LLLF  MRR GV  +A+TL+ VL AC+       G Q+H     +G   D+ +  +
Sbjct: 242 CSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDS 301

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           ++  YS+ G  +DA + F+ ++  D +  N++IT Y     +E+A  +F+ MP K  +SW
Sbjct: 302 VIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSW 361

Query: 405 NSMIVGLSQ-------------------------------NGSPIEALDLFCNMNKLDLR 433
            SM+VG +                                NG  + A+  FC M++   +
Sbjct: 362 TSMVVGFANRGWMRESVELFEQMPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCK 421

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  + + ++SA A+++ L  G Q  A    +G   D  + TSL+  Y KCG
Sbjct: 422 PNTITFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAVHTSLISMYAKCG 473



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 224/469 (47%), Gaps = 68/469 (14%)

Query: 53  RCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           + G   +A L+++EMP+  R+    NA++ G++++G    +L++F  M  ++  SW+ ++
Sbjct: 143 KAGMLREAELVYEEMPQQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMV 202

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
            G  K G +  AR +F+ MP R+ ++W SMI  YV+ G   + + LF  +     E +Q 
Sbjct: 203 DGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRR---EGVQV 259

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +A  L+ V+ ACA  +    G QIH+ I+  G + D  LG S++ +Y + G    A +  
Sbjct: 260 NATTLSVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAF 319

Query: 231 NMMKEPDDFCLSALISGY-------------------------------ANCGKMNDARR 259
           N M++ D    ++LI+GY                               AN G M ++  
Sbjct: 320 NCMQQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVE 379

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F++      V W ++IS +I+N +   A+  F +M + G   +  T + +LSA +SL  
Sbjct: 380 LFEQMPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAM 439

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G+Q H ++  +G                                V+D+ +  ++I++
Sbjct: 440 LNQGRQAHAYSINMG-------------------------------WVFDSAVHTSLISM 468

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+ CGR+ +A H+F ++ N SLI+ NSMI    Q+G   +AL LF  M     + +  + 
Sbjct: 469 YAKCGRLAEAHHVFSSISNPSLIAINSMITAFVQHGFAEDALKLFTKMQNAGYKPNHVTF 528

Query: 440 ASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
             +++ CA    ++ G   F  +  + G++ +    T +VD   + G +
Sbjct: 529 LGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 170/363 (46%), Gaps = 36/363 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C        G Q+H   +  G     + + + ++ MY R G   DA   F+ M
Sbjct: 264 LSVVLDACAGASLAREGIQIHNLIISMG-FELDIFLGDSVIIMYSRFGWMADAQRAFNCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  SWN++I G+++    E++  LF +MPQK+  SW  ++ GFA  G ++ +  LF 
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ +AW ++I  ++ NG    AVR F  ++    E  + +    + ++ A A LA 
Sbjct: 383 QMPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQ---EGCKPNTITFSCLLSALASLAM 439

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q H++ +  G  FDS + +SL+++Y KCG    A+ V + +  P    ++++I+ 
Sbjct: 440 LNQGRQAHAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITA 499

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +   G   D                               AL LF KM+  G   +  T 
Sbjct: 500 FVQHGFAED-------------------------------ALKLFTKMQNAGYKPNHVTF 528

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             +L+ C+  GF++ G         V GV  +    + ++D   + G+ ++A ++ + + 
Sbjct: 529 LGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP 588

Query: 367 VYD 369
             D
Sbjct: 589 QND 591



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 6/276 (2%)

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+  YG+ G    A  + + M   D    +AL++ YA+ G +  AR VFD     ++  
Sbjct: 43  ALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAPS 102

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+++S Y+       A  LF+KM      ++A +  +++S  +  G L   + V+    
Sbjct: 103 WNALLSVYLRAARPRAAHALFYKMP----AKNAVSYGAIISGLAKAGMLREAELVYEEMP 158

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +     D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ 
Sbjct: 159 QQ--WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARR 216

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  MP +S++SW SMI G  + G   + L LF NM +  ++++  +L+ V+ ACA  S 
Sbjct: 217 VFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGASL 276

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
              G Q+   +  +G + D  +  S++  Y + G++
Sbjct: 277 AREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWM 312



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           LN ++T Y   GR+ DA+ +F  MP++ +ISW +++   +  G    A  +F +M +
Sbjct: 41  LNALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPR 97


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 241/497 (48%), Gaps = 87/497 (17%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-----AL 61
           ++  LL+ C    S+H   QLH H +  G+ + T    +++L  Y  C  P       A 
Sbjct: 14  HVRELLRRCG---SVHRLNQLHAHLVVHGVDDVT----SQILASY--CALPAGGGVWYAR 64

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFS------------ 105
            LFD +P  + F +N++I  +      +++L L   M ++    N+F+            
Sbjct: 65  QLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQ 124

Query: 106 -W----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            W                      N L+  +A AG L  +R  F++M  RN ++WNSMI+
Sbjct: 125 AWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIN 184

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y + G  REA  LF+ +     + L  D F L +++ AC+    LE+GK +HSH+LV G
Sbjct: 185 GYAQAGNTREACSLFEGMRR---QGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRG 241

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
              D +L ++LV++YGKCGD   A+   +MM   +    ++++   A    ++ AR  F+
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           +  + S + WN+MIS Y+      EAL L+++M+  G+  D  TLA+VLSAC  LG L  
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK +H                 + D +   G+                 L N+++ +Y+ 
Sbjct: 362 GKMIH---------------DCIRDNFHNPGVA----------------LFNSLLDMYAR 390

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG+++ A  +F  MP+K++ISWN++I  L+ +G   +AL  F +M       D+ +  ++
Sbjct: 391 CGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVAL 450

Query: 443 ISACANISSLELGEQVF 459
           +SAC +   LE G+  F
Sbjct: 451 LSACNHGGLLEAGQYYF 467



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 190/401 (47%), Gaps = 36/401 (8%)

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLIS--GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
           H+   L    V+   +D +  +L S       G +  AR LF+ +P  +   +NS+I  Y
Sbjct: 26  HRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAY 85

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
             +   +EA+ L + +   +   +  + F L  ++ ACA + A E       H++V    
Sbjct: 86  CNSHCPQEALPLLRGM---IRRGILPNEFTLPFLLKACARVQAWE-------HVMVT--- 132

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                       +G         QV         F  +AL+  YA+ G + D+RR FD  
Sbjct: 133 ------------HGVVVKLGFVGQV---------FVGNALLHSYASAGSLGDSRRFFDEM 171

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            D + V WNSMI+GY       EA  LF  MRR G+L D  TL S+L ACS+ G LE GK
Sbjct: 172 VDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK 231

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            VH H    G   D+I+A+AL+D Y K G    A   F  +   + +   +M+   +   
Sbjct: 232 LVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRA 291

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            I+ A+  F  +P KS+ISWN+MI    Q G   EALDL+  M  L L  D+F+LA+V+S
Sbjct: 292 SIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLS 351

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AC  +  L  G+ +   +     +    +  SL+D Y +CG
Sbjct: 352 ACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCG 392



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 138/279 (49%), Gaps = 35/279 (12%)

Query: 215 NLYGKCGDFNSANQV-LNMMKEPDDFCLSALISGY---ANCGKMNDARRVFDRTTDTSSV 270
            L  +CG  +  NQ+  +++    D   S +++ Y      G +  AR++FDR  D    
Sbjct: 17  ELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           ++NS+I  Y +++   EAL L   M R G+L +  TL  +L AC+ +   EH    HG  
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G +  V V +ALL +Y+                               S G + D++
Sbjct: 137 VKLGFVGQVFVGNALLHSYA-------------------------------SAGSLGDSR 165

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
             F  M +++++SWNSMI G +Q G+  EA  LF  M +  L  D+F+L S++ AC+   
Sbjct: 166 RFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEG 225

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +LE G+ V + + + G   D I++ +LVD Y KCG + M
Sbjct: 226 NLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLM 264



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 163/395 (41%), Gaps = 76/395 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +C+   ++  GK +H H L +G     L +AN L+ MY +CG         D +
Sbjct: 214 LVSLLFACSAEGNLEFGKLVHSHLLVRGC-RIDLILANALVDMYGKCG---------DLL 263

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
               CF                      ++MP KN  SW  ++   AK   +  AR  F 
Sbjct: 264 MAHTCF----------------------DMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +P ++ I+WN+MI CYV+ G   EA+ L+  +    +  L  D F LA V+ AC  L  
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMK---LLGLAPDEFTLAAVLSACGQLGD 358

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GK IH  I  N  +    L +SL+++Y +CG  ++A  + + M   +    +A+I  
Sbjct: 359 LASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGA 418

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A  G+  D                               AL+ F  M  +    D  T 
Sbjct: 419 LAMHGRAQD-------------------------------ALMFFRSMVFDAFPPDEITF 447

Query: 308 ASVLSACSSLGFLEHGKQV-----HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            ++LSAC+  G LE G+       H +  K GV       + ++D   + G  + A  L 
Sbjct: 448 VALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEH----YACMVDLLGRGGQLAKAVDLI 503

Query: 363 SELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTM 396
            ++ +  D ++   ++      G I+  K + + +
Sbjct: 504 KDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQL 538



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     +  GK +H   ++    N  + + N LL MY RCG    A+ LF EM
Sbjct: 346 LAAVLSACGQLGDLASGKMIH-DCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEM 404

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLIS-----GFAKAGE 118
           P +N  SWNA+I      G  + +L  F  M       ++ ++  L+S     G  +AG+
Sbjct: 405 PSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQ 464

Query: 119 --LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              +  R ++N  P     A   M+    R G   +AV L K++       ++ D  +  
Sbjct: 465 YYFQAMRHVYNVKPGVEHYA--CMVDLLGRGGQLAKAVDLIKDMP------MRPDVVVWG 516

Query: 177 TVIGACADLAALEYGKQIHSHIL 199
            ++GAC     ++ GKQ+   +L
Sbjct: 517 ALLGACRIHGHIQIGKQVIKQLL 539


>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 836

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 66/477 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C    S     QLH H +K   L +   I N L+ MY++CG  T A  +F  +   +
Sbjct: 149 MKACGCLASTRFALQLHAHVIKLH-LGAQTCIQNSLVDMYIKCGAITLAETVFLNIESPS 207

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
            F WN+M                               I G+++      A  +F  MP 
Sbjct: 208 LFCWNSM-------------------------------IYGYSQLYGPYEALHVFTRMPE 236

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+ ++WN++I  + + G     +  F E+ +      + +     +V+ ACA ++ L++G
Sbjct: 237 RDHVSWNTLISVFSQYGHGIRCLSTFVEMCN---LGFKPNFMTYGSVLSACASISDLKWG 293

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H+ IL      D+ LGS L+++Y KCG    A +V N + E +    + LISG A  
Sbjct: 294 AHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQF 353

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G  +D                               AL LF++MR+  V+ D  TLA++L
Sbjct: 354 GLRDD-------------------------------ALALFNQMRQASVVLDEFTLATIL 382

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
             CS   +   G+ +HG+A K G+   V V +A++  Y++ G    A   F  + + DTI
Sbjct: 383 GVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTI 442

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
               MIT +S  G I+ A+  F  MP +++I+WNSM+    Q+G   E + L+  M    
Sbjct: 443 SWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKA 502

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ D  + A+ I ACA++++++LG QV + VT  GL SD  ++ S+V  Y +CG IK
Sbjct: 503 VKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIK 559



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 6/301 (1%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            +++H+ ++++GLD    L ++L+++Y  CG  + A +V       + F  + ++  + +
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 251 CGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE----DA 304
            G+M +A  +FD        SV W +MISGY  N     ++  F  M R+   +    D 
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            +    + AC  L       Q+H H  K+ +     + ++L+D Y K G  + A  +F  
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLN 202

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           ++       N+MI  YS      +A H+F  MP +  +SWN++I   SQ G  I  L  F
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTF 262

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M  L  + +  +  SV+SACA+IS L+ G  + AR+  +    D  + + L+D Y KC
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322

Query: 485 G 485
           G
Sbjct: 323 G 323



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 175/399 (43%), Gaps = 75/399 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C+  +    G+ LH + +K G ++S +P+ N ++ MY RCG+           
Sbjct: 378 LATILGVCSGQNYAATGELLHGYAIKSG-MDSFVPVGNAIITMYARCGD----------- 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                EK+   F  MP ++  SW  +I+ F++ G++  AR  F+
Sbjct: 426 --------------------TEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFD 465

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP RN I WNSM+  Y+++GF+ E ++L+  + S  V+    D    AT I ACADLA 
Sbjct: 466 MMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKP---DWVTFATSIRACADLAT 522

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           ++ G Q+ SH+   GL  D  + +S+V +Y +CG                          
Sbjct: 523 IKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCG-------------------------- 556

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                ++ +AR+VFD     + + WN+M++ +  N    +A+  +  M R     D  + 
Sbjct: 557 -----QIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISY 611

Query: 308 ASVLS-ACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDT---YSKRGMPSDACKLF 362
            +VLS      G L+  K  + G   K     +  V  ALL     +    +   A K  
Sbjct: 612 VAVLSDLLGRAGLLDQAKNLIDGMPFK----PNATVWGALLGACRIHHDSILAETAAKKL 667

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            EL V D+     +  +Y+  G +E+   + + M  K +
Sbjct: 668 MELNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGI 706



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
            +++H      G+   + + + LL  YS  GM  DA ++F E    +    NTM+  +  
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 383 CGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNM---NKLDLR-MDK 436
            GR+ +A+++F  MP+  +  +SW +MI G  QNG P  ++  F +M   +  D++  D 
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           FS    + AC  ++S     Q+ A V  + L +   I  SLVD Y KCG I + E
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAE 197


>gi|115458508|ref|NP_001052854.1| Os04g0436800 [Oryza sativa Japonica Group]
 gi|38344064|emb|CAD40816.2| OSJNBa0006B20.8 [Oryza sativa Japonica Group]
 gi|113564425|dbj|BAF14768.1| Os04g0436800 [Oryza sativa Japonica Group]
 gi|116310780|emb|CAH67572.1| H0315A08.2 [Oryza sativa Indica Group]
 gi|215704891|dbj|BAG94919.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218194892|gb|EEC77319.1| hypothetical protein OsI_15984 [Oryza sativa Indica Group]
          Length = 717

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 151/529 (28%), Positives = 251/529 (47%), Gaps = 93/529 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP------------IANRLLQMYMRCGN 56
           A LL+   +H S+   +++  H     + +ST P            + NR ++    CG+
Sbjct: 48  ASLLRLATSHRSLAAARRIATH-----LASSTAPSTSHSFTATSTFLFNRAVESLAACGS 102

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ---------- 100
            TDA  LFD MPRR+  SWNA+I  + +     +++ LF+ M      P+          
Sbjct: 103 LTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGC 162

Query: 101 ------------------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAW 137
                             K DF  N+     L+  + K   L  AR  F+ +P+ N I+W
Sbjct: 163 CAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISW 222

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N +I  Y+  G    A+ +F  +    V  L    + ++  + AC D  ALE G++IH+ 
Sbjct: 223 NVIIRRYLLAGMGDMAIDMFFRMVWAGVSPL---VYTVSQALLACRDNGALEEGRRIHTF 279

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +L +G +    + SS+V++Y KCG  + A ++ ++    D    ++++SG A+CG++ DA
Sbjct: 280 VLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDA 339

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           +RVF+   + + V WN+M++GY+ + + T AL LF +MR+     DA TL  VL+AC+ L
Sbjct: 340 KRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGL 399

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G++VH  A K G I                G P                L N ++
Sbjct: 400 LDLGKGEEVHTFAFKSGFI----------------GYP---------------FLKNALL 428

Query: 378 TVYSSCGRIEDAKH--IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
            +YS CG +  A+   +F     +   SWNS+I G  ++     AL     M+  +   +
Sbjct: 429 RMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALLALSEMH-YEATPN 487

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           + + +S ++ACANI  L  G+Q+ A +   G   D I+ ++L+D Y KC
Sbjct: 488 QSTFSSALAACANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYSKC 536



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 188/392 (47%), Gaps = 34/392 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F +N  +   A  G L  AR LF+ MPRR+  +WN++I  Y R     EA+ LF  +NS 
Sbjct: 88  FLFNRAVESLAACGSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSC 147

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            V   +     LA+V+G CA+   L   +Q+H HI       + +LG++LV++YGKC   
Sbjct: 148 GV---RPKDVTLASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKC--- 201

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                          F LS             +ARR FD     + + WN +I  Y+   
Sbjct: 202 ---------------FALS-------------EARRAFDGIPKPNDISWNVIIRRYLLAG 233

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
               A+ +F +M   GV     T++  L AC   G LE G+++H    + G    V V S
Sbjct: 234 MGDMAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIHTFVLRHGYEQHVHVRS 293

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +++D Y+K G    A +LF    V D ++  ++++  +SCGRI DAK +F  M   +L+S
Sbjct: 294 SVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKRVFEGMEEHNLVS 353

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+M+ G  ++     AL LF  M +    +D  +L  V++AC  +  L  GE+V     
Sbjct: 354 WNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLDLGKGEEVHTFAF 413

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
             G      +  +L+  Y KCG ++  E  L+
Sbjct: 414 KSGFIGYPFLKNALLRMYSKCGCLRSAERLLL 445



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 180/390 (46%), Gaps = 68/390 (17%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           +++++ + K G  + + +LF++ P K+      ++SG A  G +  A+ +F  M   N +
Sbjct: 293 SSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKRVFEGMEEHNLV 352

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+M+  YVR+     A++LF+++  +  E    DA  L  V+ AC  L  L  G+++H
Sbjct: 353 SWNAMLTGYVRSMDLTSALQLFQQMRQETKE---LDAVTLGCVLNACTGLLDLGKGEEVH 409

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +    +G      L ++L+ +Y K                               CG + 
Sbjct: 410 TFAFKSGFIGYPFLKNALLRMYSK-------------------------------CGCLR 438

Query: 256 DARRV--FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
            A R+  F+  ++  S  WNS+ISGY  ++    ALL   +M       + ST +S L+A
Sbjct: 439 SAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALLALSEMHYEAT-PNQSTFSSALAA 497

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+++  L HGKQ+H +  + G + D I+ SAL+D YSK       C+LF           
Sbjct: 498 CANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYSK-------CRLF----------- 539

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                        + +  IF   P++ +I WNSMI G + NG     L+LF  M+K  + 
Sbjct: 540 -------------DYSMRIFEAGPSQDVILWNSMIFGCAYNGKGEYGLELFFEMSKQGIT 586

Query: 434 MDKFSLASVISACANISSLELGEQVFARVT 463
            D  +    + +C +   + LG   F ++T
Sbjct: 587 PDSVTFLGALVSCISEGHVGLGRSYFTQMT 616



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 41/194 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFD 65
           L  +L +C     +  G+++H    K G +     + N LL+MY +CG     + LLLF+
Sbjct: 389 LGCVLNACTGLLDLGKGEEVHTFAFKSGFIGYPF-LKNALLRMYSKCGCLRSAERLLLFE 447

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFS--------------- 105
               R+ +SWN++I G+ +    E +L   + M     P ++ FS               
Sbjct: 448 MGSERDSYSWNSLISGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHG 507

Query: 106 ------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              + LI  ++K      +  +F   P ++ I WNSMI     N
Sbjct: 508 KQIHAYMIRNGYVIDDILQSALIDMYSKCRLFDYSMRIFEAGPSQDVILWNSMIFGCAYN 567

Query: 148 GFAREAVRLFKELN 161
           G     + LF E++
Sbjct: 568 GKGEYGLELFFEMS 581



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     ++ GKQ+H + ++ G +   + + + L+ MY +C     ++ +F+  P ++
Sbjct: 495 LAACANIFLLNHGKQIHAYMIRNGYVIDDI-LQSALIDMYSKCRLFDYSMRIFEAGPSQD 553

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
              WN+MI G    G  E  L+LF  M ++ 
Sbjct: 554 VILWNSMIFGCAYNGKGEYGLELFFEMSKQG 584


>gi|222628911|gb|EEE61043.1| hypothetical protein OsJ_14892 [Oryza sativa Japonica Group]
          Length = 717

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 151/529 (28%), Positives = 251/529 (47%), Gaps = 93/529 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP------------IANRLLQMYMRCGN 56
           A LL+   +H S+   +++  H     + +ST P            + NR ++    CG+
Sbjct: 48  ASLLRLATSHRSLAAARRIATH-----LASSTAPSTSHSFTATSTFLFNRAVESLAACGS 102

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ---------- 100
            TDA  LFD MPRR+  SWNA+I  + +     +++ LF+ M      P+          
Sbjct: 103 LTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGC 162

Query: 101 ------------------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAW 137
                             K DF  N+     L+  + K   L  AR  F+ +P+ N I+W
Sbjct: 163 CAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISW 222

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N +I  Y+  G    A+ +F  +    V  L    + ++  + AC D  ALE G++IH+ 
Sbjct: 223 NVIIRRYLLAGMGDLAIDMFFRMVWAGVSPL---VYTVSQALLACRDNGALEEGRRIHTF 279

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +L +G +    + SS+V++Y KCG  + A ++ ++    D    ++++SG A+CG++ DA
Sbjct: 280 VLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDA 339

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           +RVF+   + + V WN+M++GY+ + + T AL LF +MR+     DA TL  VL+AC+ L
Sbjct: 340 KRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGL 399

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G++VH  A K G I                G P                L N ++
Sbjct: 400 LDLGKGEEVHTFAFKSGFI----------------GYP---------------FLKNALL 428

Query: 378 TVYSSCGRIEDAKH--IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
            +YS CG +  A+   +F     +   SWNS+I G  ++     AL     M+  +   +
Sbjct: 429 RMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALLALSEMH-YEATPN 487

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           + + +S ++ACANI  L  G+Q+ A +   G   D I+ ++L+D Y KC
Sbjct: 488 QSTFSSALAACANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYSKC 536



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 188/392 (47%), Gaps = 34/392 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F +N  +   A  G L  AR LF+ MPRR+  +WN++I  Y R     EA+ LF  +NS 
Sbjct: 88  FLFNRAVESLAACGSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSC 147

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            V   +     LA+V+G CA+   L   +Q+H HI       + +LG++LV++YGKC   
Sbjct: 148 GV---RPKDVTLASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKC--- 201

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                          F LS             +ARR FD     + + WN +I  Y+   
Sbjct: 202 ---------------FALS-------------EARRAFDGIPKPNDISWNVIIRRYLLAG 233

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
               A+ +F +M   GV     T++  L AC   G LE G+++H    + G    V V S
Sbjct: 234 MGDLAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIHTFVLRHGYEQHVHVRS 293

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +++D Y+K G    A +LF    V D ++  ++++  +SCGRI DAK +F  M   +L+S
Sbjct: 294 SVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKRVFEGMEEHNLVS 353

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+M+ G  ++     AL LF  M +    +D  +L  V++AC  +  L  GE+V     
Sbjct: 354 WNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLDLGKGEEVHTFAF 413

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
             G      +  +L+  Y KCG ++  E  L+
Sbjct: 414 KSGFIGYPFLKNALLRMYSKCGCLRSAERLLL 445



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 180/390 (46%), Gaps = 68/390 (17%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           +++++ + K G  + + +LF++ P K+      ++SG A  G +  A+ +F  M   N +
Sbjct: 293 SSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKRVFEGMEEHNLV 352

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+M+  YVR+     A++LF+++  +  E    DA  L  V+ AC  L  L  G+++H
Sbjct: 353 SWNAMLTGYVRSMDLTSALQLFQQMRQETKE---LDAVTLGCVLNACTGLLDLGKGEEVH 409

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +    +G      L ++L+ +Y K                               CG + 
Sbjct: 410 TFAFKSGFIGYPFLKNALLRMYSK-------------------------------CGCLR 438

Query: 256 DARRV--FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
            A R+  F+  ++  S  WNS+ISGY  ++    ALL   +M       + ST +S L+A
Sbjct: 439 SAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALLALSEMHYEAT-PNQSTFSSALAA 497

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+++  L HGKQ+H +  + G + D I+ SAL+D YSK       C+LF           
Sbjct: 498 CANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYSK-------CRLF----------- 539

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                        + +  IF   P++ +I WNSMI G + NG     L+LF  M+K  + 
Sbjct: 540 -------------DYSMRIFEAGPSQDVILWNSMIFGCAYNGKGEYGLELFFEMSKQGIT 586

Query: 434 MDKFSLASVISACANISSLELGEQVFARVT 463
            D  +    + +C +   + LG   F ++T
Sbjct: 587 PDSVTFLGALVSCISEGHVGLGRSYFTQMT 616



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 41/194 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTDALLLFD 65
           L  +L +C     +  G+++H    K G +     + N LL+MY +CG     + LLLF+
Sbjct: 389 LGCVLNACTGLLDLGKGEEVHTFAFKSGFIGYPF-LKNALLRMYSKCGCLRSAERLLLFE 447

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFS--------------- 105
               R+ +SWN++I G+ +    E +L   + M     P ++ FS               
Sbjct: 448 MGSERDSYSWNSLISGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHG 507

Query: 106 ------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              + LI  ++K      +  +F   P ++ I WNSMI     N
Sbjct: 508 KQIHAYMIRNGYVIDDILQSALIDMYSKCRLFDYSMRIFEAGPSQDVILWNSMIFGCAYN 567

Query: 148 GFAREAVRLFKELN 161
           G     + LF E++
Sbjct: 568 GKGEYGLELFFEMS 581



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     ++ GKQ+H + ++ G +   + + + L+ MY +C     ++ +F+  P ++
Sbjct: 495 LAACANIFLLNHGKQIHAYMIRNGYVIDDI-LQSALIDMYSKCRLFDYSMRIFEAGPSQD 553

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
              WN+MI G    G  E  L+LF  M ++ 
Sbjct: 554 VILWNSMIFGCAYNGKGEYGLELFFEMSKQG 584


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 146/594 (24%), Positives = 265/594 (44%), Gaps = 145/594 (24%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R  Y+A LLQ+C     +   K++H   ++  +    + ++N L+ MY++C +  DA  +
Sbjct: 27  RATYVA-LLQNCTRKRLLPEAKRIHAQMVEAWV-GPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------ 99
           F EMPRR+  SWN++I  + + G K+K+ QLF  M                         
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 100 ---------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                          Q++    N L+S + K G+L  AR +F  +  R+ +++N+M+  Y
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            +  + +E + LF +++S   E +  D      ++ A    + L+ GK+IH   +  GL+
Sbjct: 205 AQKAYVKECLGLFGQMSS---EGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN 261

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D  +G++LV +                       C+         CG ++ A++ F  T
Sbjct: 262 SDIRVGTALVTM-----------------------CV--------RCGDVDSAKQAFKGT 290

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            D   V++N++I+    +  + EA   +++MR +GV  + +T  S+L+ACS+   LE GK
Sbjct: 291 ADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGK 350

Query: 325 QVHGHACKVGVIDDVIVASA-------------------------------LLDTYSKRG 353
            +H H  + G   DV + +A                               ++  Y++R 
Sbjct: 351 LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRE 410

Query: 354 MPSDACKLFSELK-----------------------------VYDTIL----------LN 374
              +A +L+ +++                             +++ IL           N
Sbjct: 411 DRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLAN 470

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
            ++ +Y  CG + +A+++F     + +ISWNSMI G +Q+GS   A  LF  M   +L  
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           D  + ASV+S C N  +LELG+Q+  R+T  GL  D  +  +L++ Y +CG ++
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQ 584



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/523 (25%), Positives = 229/523 (43%), Gaps = 111/523 (21%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +L  LL +C    +   GK +H   L+ GI  S   +AN L+ MY RCG+  +A  +
Sbjct: 431 RVTFL-HLLSACANSSAYADGKMIHEDILRSGI-KSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------ 105
           F+    R+  SWN+MI G  + G  E + +LF  M      P    F+            
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 106 ---------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LI+ + + G L+ AR +F+ +  R+ ++W +MI   
Sbjct: 549 ELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGC 608

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
              G   +A+ LF ++ ++    ++      ++++  C   A L+ GK++ ++IL +G +
Sbjct: 609 ADQGEDMKAIELFWQMQNEGFRPVKS---TFSSILKVCTSSACLDEGKKVIAYILNSGYE 665

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+ +G+                               ALIS Y+  G M DAR VFD+ 
Sbjct: 666 LDTGVGN-------------------------------ALISAYSKSGSMTDAREVFDKM 694

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                V WN +I+GY  N     A+   ++M+   V+ +  +  S+L+ACSS   LE GK
Sbjct: 695 PSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGK 754

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +VH    K  +  DV V +AL+  Y+K G   +A       +V+D I+   ++T      
Sbjct: 755 RVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEA------QEVFDNIIEKNVVT------ 802

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                              WN+MI   +Q+G   +AL  F  M K  ++ D  +  S++S
Sbjct: 803 -------------------WNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILS 843

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           AC +   +  G Q+F+      ++S+  +  ++  + C  G +
Sbjct: 844 ACNHAGLVLEGYQIFS-----SMESEYGVLPTIEHYGCLVGLL 881



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 220/514 (42%), Gaps = 121/514 (23%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             A +L  C    ++ +GKQ+H    + G L   + + N L+ MY+RCG+  DA  +F  +
Sbjct: 535  FASVLSGCKNPEALELGKQIHGRITESG-LQLDVNLGNALINMYIRCGSLQDARNVFHSL 593

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS---------------- 105
              R+  SW AMI G    G   K+++LF  M      P K+ FS                
Sbjct: 594  QHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGK 653

Query: 106  -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                              N LIS ++K+G +  AR +F+ MP R+ ++WN +I  Y +NG
Sbjct: 654  KVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNG 713

Query: 149  FAREAVRL-FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
              + AV   ++    D+V     + F   +++ AC+  +ALE GK++H+ I+   L  D 
Sbjct: 714  LGQTAVEFAYQMQEQDVVP----NKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDV 769

Query: 208  VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
             +G+                               ALIS YA CG   +A+ VFD   + 
Sbjct: 770  RVGA-------------------------------ALISMYAKCGSQGEAQEVFDNIIEK 798

Query: 268  SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV- 326
            + V WN+MI+ Y  +   ++AL  F+ M + G+  D ST  S+LSAC+  G +  G Q+ 
Sbjct: 799  NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIF 858

Query: 327  -------------HGHACKVGVIDDVIVASALLDTYSKRGMPSDA---------CKL--- 361
                           + C VG++             ++   P DA         C++   
Sbjct: 859  SSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 918

Query: 362  --FSELKVYDTILLNT--------MITVYSSCGRIEDAKHIFRTM--------PNKSLIS 403
               +E    + + LN         +  VY++ GR +D   I R M        P +S I 
Sbjct: 919  IALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIE 978

Query: 404  WNSMIVG-LSQNGSPIEALDLFCNMNKLDLRMDK 436
             +++I   ++ + S  E  +++  + +L + M++
Sbjct: 979  VDNIIHEFIAADRSHPETAEIYAELKRLSVEMEE 1012



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 31/183 (16%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           + +T  ++L  C+    L   K++H    +  V  D+ +++ L++ Y K     DA ++F
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            E+   D I  N++I+ Y+  G  + A  +F  M N   I                    
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP------------------- 126

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
                       +K +  S+++AC + + LE G+++ +++   G   D  +  SL+  Y 
Sbjct: 127 ------------NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYG 174

Query: 483 KCG 485
           KCG
Sbjct: 175 KCG 177


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 244/496 (49%), Gaps = 79/496 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMP 68
           LL+SC +   +   KQ+  H    G L     I N+L+   M    G+   A  +F+ + 
Sbjct: 14  LLKSCKSMSQL---KQIQAHIFCFG-LQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIH 69

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTART 124
             + F +N MI+ F+K G    ++ LF  + ++    +++++  ++ G    GE++    
Sbjct: 70  HPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEK 129

Query: 125 L-----------------------------------FNDMPRRNAIAWNSMIHCYVRNGF 149
           +                                   F +MP R+A++WN MI  YVR   
Sbjct: 130 IHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKR 189

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EAV +++ +  +  E+   +A +++T + ACA L  LE GK+IH +I  N LD   ++
Sbjct: 190 FEEAVDVYRRMQMESNEKPN-EATVVST-LSACAVLRNLELGKEIHDYI-ANELDLTPIM 246

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++L+++Y KCG  + A ++ + M   +  C +++++GY  CG+++ AR +F+R+     
Sbjct: 247 GNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDV 306

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V+W +MI+GY+  N   +A+ LF +M+  GV  D   + ++L+ C+ LG LE GK +H +
Sbjct: 307 VLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNY 366

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             +  +  D +V++AL++ Y+K                               CG IE +
Sbjct: 367 IDENRIKMDAVVSTALIEMYAK-------------------------------CGCIEKS 395

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             IF  + +    SW S+I GL+ NG   EAL+LF  M    L+ D  +  +V+SAC + 
Sbjct: 396 LEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHA 455

Query: 450 SSLELGEQVFARVTII 465
             +E G ++F  ++ I
Sbjct: 456 GLVEEGRKLFHSMSSI 471



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 189/374 (50%), Gaps = 38/374 (10%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQCDAFIL 175
           G+   A  +FN +   +   +N MI  +V+ G  R A+ LF++L     ER +  D +  
Sbjct: 56  GDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLR----ERGVWPDNYTY 111

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             V+     +  +  G++IH+ ++  GL+FD  + +SL+++Y + G              
Sbjct: 112 PYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELG-------------- 157

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                   L+ G+          +VF+   +  +V WN MISGY+      EA+ ++ +M
Sbjct: 158 --------LVEGFT---------QVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRM 200

Query: 296 R-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           +  +    + +T+ S LSAC+ L  LE GK++H +      +   I+ +ALLD Y K G 
Sbjct: 201 QMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTP-IMGNALLDMYCKCGC 259

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
            S A ++F  + V +     +M+T Y  CG+++ A+++F   P++ ++ W +MI G  Q 
Sbjct: 260 VSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQF 319

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               +A+ LF  M    +  DKF + ++++ CA + +LE G+ +   +    +  D ++S
Sbjct: 320 NHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVS 379

Query: 475 TSLVDFYCKCGFIK 488
           T+L++ Y KCG I+
Sbjct: 380 TALIEMYAKCGCIE 393



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 180/426 (42%), Gaps = 106/426 (24%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GK++H +   +  L+ T  + N LL MY +CG                
Sbjct: 217 LSACAVLRNLELGKEIHDYIANE--LDLTPIMGNALLDMYCKCG---------------- 258

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
           C S                + ++F+ M  KN   W  +++G+   G+L  AR LF   P 
Sbjct: 259 CVS---------------VAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPS 303

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+ + W +MI+ YV+     +A+ LF E+    +  ++ D FI+ T++  CA L ALE G
Sbjct: 304 RDVVLWTAMINGYVQFNHFEDAIALFGEMQ---IRGVEPDKFIVVTLLTGCAQLGALEQG 360

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K IH++I  N +  D+V+ ++L+ +Y K                               C
Sbjct: 361 KWIHNYIDENRIKMDAVVSTALIEMYAK-------------------------------C 389

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G +  +  +F+   D  +  W S+I G   N + +EAL LF  M+  G+  D  T  +VL
Sbjct: 390 GCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVL 449

Query: 312 SACSSLGFLEHGKQV--------------HGHACKVGVI--------------------D 337
           SAC   G +E G+++                + C + ++                    +
Sbjct: 450 SACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNN 509

Query: 338 DVIVA--SALLD---TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           ++IV    ALL    TY    M        +++K  D+ L   + ++Y+S  R ED + +
Sbjct: 510 EIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKV 569

Query: 393 FRTMPN 398
              M +
Sbjct: 570 RSKMKD 575



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 64/324 (19%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV--NLYGKCGDFNS 225
           +QC   +  T I       ++   KQI +HI   GL  D  + + L+  ++    GDFN 
Sbjct: 1   MQCSKLLKGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNY 60

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           AN++ N +  P  F                               ++N MI  ++     
Sbjct: 61  ANRIFNHIHHPSLF-------------------------------IYNLMIKAFVKRGSL 89

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
             A+ LF ++R  GV  D  T   VL     +G +  G+++H    K G+  D  V ++L
Sbjct: 90  RSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSL 149

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y++ G+     ++F E+   D +  N MI+ Y  C R E+A  ++R M  +S     
Sbjct: 150 MDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMES----- 204

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
                   N  P EA                 ++ S +SACA + +LELG+++   +   
Sbjct: 205 --------NEKPNEA-----------------TVVSTLSACAVLRNLELGKEIHDYIA-N 238

Query: 466 GLDSDQIISTSLVDFYCKCGFIKM 489
            LD   I+  +L+D YCKCG + +
Sbjct: 239 ELDLTPIMGNALLDMYCKCGCVSV 262


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 219/470 (46%), Gaps = 74/470 (15%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT---DALLLFDEMPRRNCFSWNAMIEGF 82
           QLH   LK G     L + N L+ +YM+C +P    DA  + DEM               
Sbjct: 180 QLHCSVLKSGA-GGALSVCNALVALYMKCESPEATRDARKVLDEM--------------- 223

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                           P K+D +W  ++ G+ + G++  AR++F ++  +  + WN+MI 
Sbjct: 224 ----------------PNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMIS 267

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            YV +G A EA  LF+ +   ++ER+  D F   +V+ ACA++    +GK +H  I+   
Sbjct: 268 GYVHSGMAVEAFELFRRM---VLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQ 324

Query: 203 LDFDS----VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
            +F       + ++LV  Y KCG+   A ++ + M   D    + ++SGY     ++ A 
Sbjct: 325 PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAV 384

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
            VF+     + + W  M+SGY+      +AL LF+KMR   V     T A  ++AC  LG
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELG 444

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L+HGKQ+HGH  ++G        +AL                               IT
Sbjct: 445 ALKHGKQLHGHIVQLGFEGSNSAGNAL-------------------------------IT 473

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y+ CG +++A  +F  MPN   +SWN+MI  L Q+G   EAL+LF  M    +  D+ S
Sbjct: 474 MYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 439 LASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFI 487
             +V++AC +   ++ G + F  +    G+   +   T L+D   + G I
Sbjct: 534 FLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRI 583



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 202/398 (50%), Gaps = 15/398 (3%)

Query: 109 LISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           L++ +A A  L  A + F+ +P  RR+ +  N++I  Y R   A  AV +F+ L +    
Sbjct: 94  LVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS--G 151

Query: 167 RLQCDAFILATVIGACADLA--ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            L+ D +    ++ A   L   ++ +  Q+H  +L +G      + ++LV LY KC    
Sbjct: 152 SLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPE 211

Query: 225 S---ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           +   A +VL+ M   DD   + ++ GY   G +  AR VF+       V+WN+MISGY+ 
Sbjct: 212 ATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVH 271

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG---VIDD 338
           +    EA  LF +M    V  D  T  SVLSAC+++G   HGK VHG   ++    V + 
Sbjct: 272 SGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEA 331

Query: 339 VI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            + V +AL+  YSK G  + A ++F  + + D +  NT+++ Y     ++ A  +F  MP
Sbjct: 332 ALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMP 391

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            K+ +SW  M+ G    G   +AL LF  M   +++   ++ A  I+AC  + +L+ G+Q
Sbjct: 392 YKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQ 451

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           +   +  +G +       +L+  Y +CG +K  E +LM
Sbjct: 452 LHGHIVQLGFEGSNSAGNALITMYARCGAVK--EAHLM 487



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 159/342 (46%), Gaps = 67/342 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  + K G+   + ++F+ M  K+  SWN ++SG+ ++  L  A  +F +MP +N +
Sbjct: 337 NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL 396

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W  M+  YV  GFA +A++LF ++ S+ V+   CD +  A  I AC +L AL++GKQ+H
Sbjct: 397 SWMVMVSGYVHGGFAEDALKLFNKMRSENVK--PCD-YTYAGAIAACGELGALKHGKQLH 453

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            HI+  G                    F  +N   N           ALI+ YA CG + 
Sbjct: 454 GHIVQLG--------------------FEGSNSAGN-----------ALITMYARCGAVK 482

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F    +  SV WN+MIS    +    EAL LF +M   G+  D  +  +VL+AC+
Sbjct: 483 EAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACN 542

Query: 316 SLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
             G ++ G +         G+I          D Y++                       
Sbjct: 543 HSGLVDEGFRYFESMKRDFGIIPGE-------DHYTR----------------------- 572

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNG 415
            +I +    GRI +A+ + +TMP +   S W +++ G   +G
Sbjct: 573 -LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSG 613



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 97/240 (40%), Gaps = 18/240 (7%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C    ++  GKQLH H ++ G   S     N L+ MY RCG   +A L+F
Sbjct: 430 DYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSN-SAGNALITMYARCGAVKEAHLMF 488

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----SWNMLISGFAKAGELK 120
             MP  +  SWNAMI    + GH  ++L+LF+ M  +  +    S+  +++    +G + 
Sbjct: 489 LVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVD 548

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                F  M R   I      +  +I    R G   EA  L K +        +    I 
Sbjct: 549 EGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP------FEPTPSIW 602

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++  C     +E G      +       D      L N Y   G +  A +V  +M++
Sbjct: 603 EAILSGCRTSGDMELGAHAADQLFKMTPQHDGTY-ILLSNTYSAAGCWVDAARVRKLMRD 661


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 235/488 (48%), Gaps = 47/488 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C     +  G+Q+  H ++ G     L + N L+ MY  CG   DA  +FD  P  
Sbjct: 109 LAAACAARRDVSEGRQVQSHAIRHG-FGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVW 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN ++  ++  G  ++++ +F  MP++N  + + ++S F + G ++ AR +F++  
Sbjct: 168 DAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAE 227

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+   W +MI C+ RN    EA+ +F  +  ++      D  ++ +V+ ACA    +  
Sbjct: 228 CRDIFTWTAMISCFERNDMFAEALHMFSCMRREM---WPVDEALMVSVVAACAQSEVIRN 284

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+  H  ++  GL     + + L+++Y  C D  +A ++ +     D F  +++I+GY  
Sbjct: 285 GELCHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLK 344

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + +A  +F    D  +V W++MISG + NN+ + AL +F  MR  GV  D  T+ SV
Sbjct: 345 NGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSV 404

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SAC++L  LE GK VH +                                  + K Y T
Sbjct: 405 ISACTNLSALEKGKSVHDYV--------------------------------RQNKCYIT 432

Query: 371 ILLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           ++L T +I +Y  CG +E A  +F  M  K    WN++IVGL+ NG   ++L++F  M  
Sbjct: 433 LVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEA 492

Query: 430 LDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCK 483
               + ++ +   V+SAC +   +E G   F  +        QI+        +VD   +
Sbjct: 493 SSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQ----HKYQIVPNIRHYGCMVDLLGR 548

Query: 484 CGFIKMDE 491
            G++K  E
Sbjct: 549 AGYVKEAE 556



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 184/397 (46%), Gaps = 39/397 (9%)

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           NA + N+++   +  G     + L+  L +        D +    +  ACA    +  G+
Sbjct: 70  NAFSCNTLLKAALLAGMPHLCLPLYTSLPASP------DTYTHPILAAACAARRDVSEGR 123

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCG------------------------------- 221
           Q+ SH + +G   D  L ++L+++Y  CG                               
Sbjct: 124 QVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYVHAG 183

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           D + A  V   M + +   +S+++S +   G + +AR VFD         W +MIS +  
Sbjct: 184 DVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFER 243

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N+   EAL +F  MRR     D + + SV++AC+    + +G+  HG   + G+   + +
Sbjct: 244 NDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNI 303

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            + L+  YS       A +LF      D    N+MI  Y   G +E+A  +F  MP+K  
Sbjct: 304 QNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDN 363

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           +SW++MI G  QN     AL +F NM    +R D+ ++ SVISAC N+S+LE G+ V   
Sbjct: 364 VSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGKSVHDY 423

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK--MDEYYLMQ 496
           V         ++ TSL+D Y KCG+++  MD + +M+
Sbjct: 424 VRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIME 460



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 22/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C    ++  GK +H  ++++     TL +   L+ MYM+CG    A+ +F+ M
Sbjct: 401 IVSVISACTNLSALEKGKSVH-DYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIM 459

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKAGELKTA 122
             +    WNA+I G    G   KSL++F+ M        N+ ++  ++S    AG ++  
Sbjct: 460 EEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEG 519

Query: 123 RTLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFIL 175
           R  F  M  +  I  N      M+    R G+ +EA         DL+E +    D    
Sbjct: 520 RHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEA--------EDLIESMPMSPDVPAW 571

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++GAC      E G+++    LVN         + L N+Y K G + S N + + MK+
Sbjct: 572 GALLGACWKHGENEVGERV-GRKLVNLDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQ 630


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 228/469 (48%), Gaps = 43/469 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L    R G   +A  LFD MP RN  SWNAMI      G    +  LF+ MP ++DF
Sbjct: 53  NSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDF 112

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIA-WNSMIHCYVRNGFAREAVRLFKELNSD 163
           SW +++S +A+AGEL+ AR + + MP     A +N+MI  Y +NG   +AV+L +E+ + 
Sbjct: 113 SWTVMVSCYARAGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAP 172

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
                  D F   + +        +    Q    ++    + D V  + ++  + + GD 
Sbjct: 173 -------DLFSWNSALAGLTQSGQMVRAVQFFDEMV----EKDMVSWNLMLEGFVRAGDL 221

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           ++A      ++ P+      L++GY   G+++DAR +FDR  + + V  N M+ GY+  +
Sbjct: 222 DAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLS 281

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV----------------H 327
              EA  LF +M      +++ +  +++S  +  G L+  K +                H
Sbjct: 282 RLEEACKLFDEMPG----KNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMH 337

Query: 328 GHACKVGVID-----------DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           G+  +  V D           D +  + ++  Y +RGM  +A  LF  +   DT+  NTM
Sbjct: 338 GYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTM 397

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           I  Y+  G++  A  IFR M  K+ +SWNS+I G  QNG  ++A   F  M +   R D 
Sbjct: 398 IAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADW 457

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            + AS + ACAN+++L +G Q+ + +   G  +D     +L+  Y KCG
Sbjct: 458 STYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCG 506



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 207/446 (46%), Gaps = 65/446 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  L    + G    A+  FDEM  ++  SWN M+EGF++ G  + +   F  +   N  
Sbjct: 178 NSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVV 237

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  L++G+ +AG +  AR LF+ MP RN +A N M+  YVR     EA +LF E+    
Sbjct: 238 SWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGK- 296

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQI----------------HSHI---------- 198
                 ++    T+I   A    L+  K +                H ++          
Sbjct: 297 ------NSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQ 350

Query: 199 LVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           + +G++  D+V  +++++ Y + G    A  +   M   D    + +I+GYA  G+M  A
Sbjct: 351 IFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKA 410

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
             +F R +  ++V WNS+ISG++ N    +A   F  MRR     D ST AS L AC++L
Sbjct: 411 IGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRACANL 470

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G+Q+H    + G I+D                      LF+          N +I
Sbjct: 471 AALHVGRQLHSLLVRSGHIND----------------------LFAR---------NALI 499

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           + Y+ CGR+ +AK IF  M  K ++SWN+++ G + NG   EA+ +F  M    +R D+ 
Sbjct: 500 STYAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEV 559

Query: 438 SLASVISACANISSLELGEQVFARVT 463
           +   ++SAC+    ++ G   F  +T
Sbjct: 560 TFVGILSACSRAGLIDEGLGFFNSMT 585



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 18/190 (9%)

Query: 4   RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           R D+   A  L++C    ++HVG+QLH   ++ G +N  L   N L+  Y +CG   +A 
Sbjct: 454 RADWSTYASCLRACANLAALHVGRQLHSLLVRSGHIND-LFARNALISTYAKCGRMLEAK 512

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAG 117
            +FDEM  ++  SWNA+++G+   G   +++ +F  M     + ++ ++  ++S  ++AG
Sbjct: 513 QIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAG 572

Query: 118 ELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            +      FN M    ++      +  M     R G   EA  L + +      ++Q +A
Sbjct: 573 LIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGM------QIQPNA 626

Query: 173 FILATVIGAC 182
            +   ++GAC
Sbjct: 627 GVWGALLGAC 636


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 247/467 (52%), Gaps = 16/467 (3%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYM---RCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           LH H L+ G L +   +A+ LL  Y    R G+   A          + F+++ M+   +
Sbjct: 102 LHAHALRSG-LATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHV 160

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           K G    + +LF  MP+K+  S+  ++    K G ++ A  L+   P  +   + +MI  
Sbjct: 161 KAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISG 220

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA-----DLAALEYGKQIHSHI 198
           +VRN   ++A  +F+++   L   ++ +   L  VI AC      DLA    G  +  ++
Sbjct: 221 FVRNELHKDAFTVFRKM---LTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNL 277

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
               ++    + +SL+ LY + GD  +A +V + M+  D    +AL+  YA+ G ++ AR
Sbjct: 278 FEKSIE----VHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGAR 333

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           RV D     + V W ++I+ +    +  EAL L+ +M  +G   + S  +SVLSAC++L 
Sbjct: 334 RVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQ 393

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G ++H +A K+G   ++ V+S+L+D Y K    + A ++F+ L   +T+  N++I+
Sbjct: 394 DLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLIS 453

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
            YS  G++ +A+ +F  MP ++ +SWN+MI G ++N    +AL+ F  M        + +
Sbjct: 454 GYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEIT 513

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           L+SV+ ACAN+ SLE+G  V A +  +G++ +  + T+L D Y K G
Sbjct: 514 LSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSG 560



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 220/421 (52%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  ++++G    + ++F+ M  ++  SW  L+  +A  G+L  AR + + MP RN +
Sbjct: 286 NSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEV 345

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W ++I  + + G   EA++L+ ++   L +  + +    ++V+ ACA L  L  G +IH
Sbjct: 346 SWGTLIARHEQKGDTAEALKLYSQM---LADGCRPNISCFSSVLSACATLQDLRGGTRIH 402

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++ L  G   +  + SSL+++Y KC     A +V N + E +  C ++LISGY+  GKM 
Sbjct: 403 ANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMV 462

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F++    +SV WN+MISGY  N    +AL  F+ M  +G +    TL+SVL AC+
Sbjct: 463 EAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACA 522

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +L  LE G+ VH    K+G+ D++ + +AL D Y+K                        
Sbjct: 523 NLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKS----------------------- 559

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ ++ +F  MP K+ I+W +M+ GL++NG   E++ LF +M +  +  +
Sbjct: 560 --------GDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPN 611

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F  +   G+       T +VD   + G +   E  LM
Sbjct: 612 EHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLM 671

Query: 496 Q 496
           +
Sbjct: 672 K 672



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 183/432 (42%), Gaps = 101/432 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H + LK G  ++ L +++ L+ MY +C   T A    
Sbjct: 379 ISCFSSVLSACATLQDLRGGTRIHANALKMGS-STNLFVSSSLIDMYCKCKQCTYAQ--- 434

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
                                       ++FN +P+KN   WN LISG++  G++  A  
Sbjct: 435 ----------------------------RVFNSLPEKNTVCWNSLISGYSWNGKMVEAEG 466

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LFN MP RN+++WN+MI  Y  N    +A+  F  +   L          L++V+ ACA+
Sbjct: 467 LFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAM---LASGHIPGEITLSSVLLACAN 523

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +LE G+ +H+ I+  G++ +  +G++L ++Y K GD +S+ +V   M E ++      
Sbjct: 524 LCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNN------ 577

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                                    + W +M+ G   N    E++ LF  M  NG+  + 
Sbjct: 578 -------------------------ITWTAMVQGLAENGFAEESISLFEDMIENGIAPNE 612

Query: 305 STLASVLSACSSLGFLEHG------KQVHG-------HACKVGVID-------------- 337
            T  ++L ACS  G +E         Q HG       + C V V+               
Sbjct: 613 HTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMK 672

Query: 338 -----DVIVASALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                D    S+LL    TY  + +   A K   EL+  +T     +  +Y+SCG+ +DA
Sbjct: 673 VSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDA 732

Query: 390 KHIFRTMPNKSL 401
                 M   SL
Sbjct: 733 AETRILMQGASL 744



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 3/124 (2%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
           ++T  ++ S   S G L     +H HA + G+  D  VAS LL  Y+      D  + F 
Sbjct: 80  SATSTTMPSYAPSSGCLPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFR 139

Query: 364 ELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +    D   +   + M++ +   G I  A+ +F  MP KS++S+ +M+  L + GS  +A
Sbjct: 140 DCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDA 199

Query: 421 LDLF 424
           ++L+
Sbjct: 200 VELY 203


>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
          Length = 806

 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 157/564 (27%), Positives = 247/564 (43%), Gaps = 115/564 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C      H G+Q+H   LK G   +    I  +L+  Y +C     A  LF ++
Sbjct: 48  GEILQGCVYERDFHTGRQIHARILKNGEFYAKNEYIETKLVIFYAKCDAHEIAETLFSKL 107

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI------------SGFA- 114
             RN FSW A+I    ++G  E +L  F  M +   F  N ++            SGF  
Sbjct: 108 RVRNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDEIFPDNFVVPNVCKACGALQWSGFGR 167

Query: 115 ---------------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                      K G L  AR +F+++P RN +AWN+++  YV+N
Sbjct: 168 GIHGYVAKSGLYGDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQN 227

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+RL  ++  + VE  +     ++T + A A++  +  GKQ H+  +VNGL+ D+
Sbjct: 228 GMNEEAIRLMCDMREEGVEPTR---VTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDN 284

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           +LG+S++N Y K G    A  V                               FDR    
Sbjct: 285 ILGTSVLNFYCKVGLIEYAEMV-------------------------------FDRMIGK 313

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V WN +ISGY+      +A+ +   MR   +  D  TL++++SA +     + GK+V 
Sbjct: 314 DVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSKLGKEVQ 373

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG--- 384
            +  +     D+ +AS ++D Y+K G   DA ++F      D IL NT++  Y+  G   
Sbjct: 374 CYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGLSG 433

Query: 385 --------------------------------RIEDAKHIFRTMPN----KSLISWNSMI 408
                                           ++++AK +F  M +     +L+SW +M+
Sbjct: 434 EALRLFYEMQLESVPPNAITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPTLVSWTTMM 493

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            GL QNG   EA+     M +  LR + FS+   +SACAN++SL LG  V   +    L 
Sbjct: 494 NGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLASLHLGRSVHGYIIRNQLH 553

Query: 469 SDQI-ISTSLVDFYCKCGFIKMDE 491
           S  + I T+L+D Y KCG I   E
Sbjct: 554 SSSVSIETALIDMYAKCGDISKAE 577



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/498 (23%), Positives = 230/498 (46%), Gaps = 86/498 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G+    + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 155 KACGALQWSGFGRGIHGYVAKSGLYGDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 214

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++L   M ++               S NM            
Sbjct: 215 VAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMCGVGEGKQSHAV 274

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 275 AVVNGLEMDNILGTSVLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDA 334

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           +R+ K +    +E+L+ D   L+T++ A A     + GK++  + + +  + D  L S++
Sbjct: 335 IRMCKLMR---LEKLKFDCVTLSTLMSAAARTQNSKLGKEVQCYCIRHSFESDIGLASTV 391

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------------ 261
           +++Y KCG    A +V +   + D    + L++ YA  G   +A R+F            
Sbjct: 392 IDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNA 451

Query: 262 ----------------DRTTD-----------TSSVMWNSMISGYISNNEDTEALLLFHK 294
                           D   +            + V W +M++G + N    EA+    K
Sbjct: 452 ITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPTLVSWTTMMNGLVQNGCSEEAVHYLRK 511

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRG 353
           M+ +G+  +  ++   LSAC++L  L  G+ VHG+  +  +    V + +AL+D Y+K G
Sbjct: 512 MQESGLRPNVFSITVALSACANLASLHLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCG 571

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIV 409
             S A K+F      +  L N MI+ Y+  G +++A  ++R++ +  +    I++ +++ 
Sbjct: 572 DISKAEKVFKRKSYSELPLFNAMISAYALSGNVKEAIDLYRSLEDMGIKPDNITFTNVLS 631

Query: 410 GLSQNGSPIEALDLFCNM 427
             +  G   +A+++F +M
Sbjct: 632 ACNHAGDINQAIEIFSDM 649



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 162/366 (44%), Gaps = 67/366 (18%)

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           +D PR     +   +    +NG  REA+ L  E++      ++    I   ++  C    
Sbjct: 5   DDQPRN---PYFHRVSSLCKNGEIREALSLVTEMD---FRNVRIGPEIYGEILQGCVYER 58

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
               G+QIH+ IL NG                   +F + N+ +           + L+ 
Sbjct: 59  DFHTGRQIHARILKNG-------------------EFYAKNEYIE----------TKLVI 89

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
            YA C     A  +F +    +   W ++I           AL+ F +M ++ +  D   
Sbjct: 90  FYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMGFVEMLKDEIFPDNFV 149

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTYSKRGMPSDACKLFSEL 365
           + +V  AC +L +   G+ +HG+  K G+  D V VAS+L D Y K              
Sbjct: 150 VPNVCKACGALQWSGFGRGIHGYVAKSGLYGDCVFVASSLADMYGK-------------- 195

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                            CG ++DA+ +F  +P +++++WN+++VG  QNG   EA+ L C
Sbjct: 196 -----------------CGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMC 238

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +M +  +   + ++++ +SA AN+  +  G+Q  A   + GL+ D I+ TS+++FYCK G
Sbjct: 239 DMREEGVEPTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCKVG 298

Query: 486 FIKMDE 491
            I+  E
Sbjct: 299 LIEYAE 304



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 111/233 (47%), Gaps = 16/233 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H+G+ +H + ++  + +S++ I   L+ MY +CG+ + A  +F       
Sbjct: 528 LSACANLASLHLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCGDISKAEKVFKRKSYSE 587

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
              +NAMI  +   G+ ++++ L+  +     + ++ ++  ++S    AG++  A  +F+
Sbjct: 588 LPLFNAMISAYALSGNVKEAIDLYRSLEDMGIKPDNITFTNVLSACNHAGDINQAIEIFS 647

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           DM  ++ +      +  M+      G   +A+RL +E+        + DA ++ +++  C
Sbjct: 648 DMVSKHGMEPCLEHYGLMVDLLASAGETEKALRLMEEMP------YKPDARMIQSLLVTC 701

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            +    E    +   +L +  D +S    ++ N Y   G ++   ++  MMK+
Sbjct: 702 NEEHKTELVDYLSRQLLESEPD-NSGNYVTISNAYAGEGSWDEVVKMREMMKD 753


>gi|242077973|ref|XP_002443755.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
 gi|241940105|gb|EES13250.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
          Length = 871

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 238/476 (50%), Gaps = 24/476 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNST---LPIANRLLQMYMRCGNPTDALLLF 64
           + R+LQ+C     + +G  +H   ++ G +  T   +P+ N +L MY++C     A ++F
Sbjct: 165 ITRILQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMYVKCRELGRARVVF 224

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----SWNMLISGFAKAGELK 120
           ++M +R+  +WN+MI G  +    E++  L + M ++       +WN LIS +A++GEL 
Sbjct: 225 EKMGQRDLGTWNSMIFGCCQSNEWEEARMLLDDMRREGTLPGVVTWNTLISSYARSGELD 284

Query: 121 TARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            A  +   M       + + W S++  +V +  + EA+R F  +    VE    +   +A
Sbjct: 285 VAMEMLEQMEESGVAPDVVTWTSLVSGFVHSDRSGEALRCFMRMRLAGVEP---NGMTIA 341

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           + I ACA L  L  G ++H H +  G   + + G+SLV++Y KCG+  +A ++ N + E 
Sbjct: 342 SAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAKRIFNEIPEK 401

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLF 292
           D F  +++++GYA  G    A  +F +        + + WN MISGYI N +D  A  LF
Sbjct: 402 DIFSWNSMVAGYAQAGYCGKAYELFCKMESLGVRRNVITWNIMISGYIRNGDDERAFELF 461

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS-- 350
             M   GV  D ++  ++++     G  +   ++      + V  D I   +++  ++  
Sbjct: 462 QMMESYGVKRDTASWNALIAGSVHNGHSDRALRIFRQMQSLLVRPDYITILSIIPAFANL 521

Query: 351 ---KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
               +     AC   + L++ D  + N +I  YS  G +  A  +F    ++++ISWN +
Sbjct: 522 VAFSKVREIHACIFHNNLEM-DGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCI 580

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           I+    +GSP EALD FC M +  +R D  +L +VI A      +   +Q+F  +T
Sbjct: 581 ILAHLLHGSPCEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKQIFYNMT 636



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 207/459 (45%), Gaps = 85/459 (18%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+  + AG L  AR +F  M  R+ +AW++MI  Y   G  ++ V L   +   + E +
Sbjct: 102 LITMHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYKDVVSLAVTM---VREGV 158

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGL----DFDSVLGSSLVNLYGKCGDFN 224
             D F++  ++ ACA    LE G  +HS  + +G       D  +G+S++ +Y KC +  
Sbjct: 159 TPDRFLITRILQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMYVKCRELG 218

Query: 225 SANQVLNMMKE-----------------------------------PDDFCLSALISGYA 249
            A  V   M +                                   P     + LIS YA
Sbjct: 219 RARVVFEKMGQRDLGTWNSMIFGCCQSNEWEEARMLLDDMRREGTLPGVVTWNTLISSYA 278

Query: 250 NCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
             G+++ A  + ++  ++      V W S++SG++ ++   EAL  F +MR  GV  +  
Sbjct: 279 RSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHSDRSGEALRCFMRMRLAGVEPNGM 338

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T+AS +SAC+SL  L  G ++H HA KVG +++V+  ++L+D Y+K G    A ++F+E+
Sbjct: 339 TIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIVAAKRIFNEI 398

Query: 366 KVYDTILLNTMITVYSS---CGRI--------------------------------EDAK 390
              D    N+M+  Y+    CG+                                 E A 
Sbjct: 399 PEKDIFSWNSMVAGYAQAGYCGKAYELFCKMESLGVRRNVITWNIMISGYIRNGDDERAF 458

Query: 391 HIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            +F+ M +    +   SWN++I G   NG    AL +F  M  L +R D  ++ S+I A 
Sbjct: 459 ELFQMMESYGVKRDTASWNALIAGSVHNGHSDRALRIFRQMQSLLVRPDYITILSIIPAF 518

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AN+ +     ++ A +    L+ D  I+ +L++ Y K G
Sbjct: 519 ANLVAFSKVREIHACIFHNNLEMDGKIANALINAYSKSG 557


>gi|414866221|tpg|DAA44778.1| TPA: hypothetical protein ZEAMMB73_421222 [Zea mays]
          Length = 595

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 233/489 (47%), Gaps = 72/489 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C     +  G+QLH   +   +  S   +A++L+ +Y R  +  DA  +FD +PR 
Sbjct: 20  LIQLCADTGHLAAGRQLHARLVASSVTPSNF-LASKLISLYSRGAHLDDARRVFDAIPRP 78

Query: 71  NCFSWNAMIEG--------------FMKLGHKEKSLQLFNVMPQKND------------- 103
           + F+WNA++                F   G     + L  ++    D             
Sbjct: 79  SVFAWNAILIALSLHSADPSDAARLFAASGISPDEITLSALLKSLADSGPRLSALVAEVH 138

Query: 104 ------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                       F  N LI+ +A AG+ ++AR +F++MPRR+ ++WNS+I  Y R G+ R
Sbjct: 139 AVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDEMPRRDVVSWNSLISSYARAGWYR 198

Query: 152 EAVRLFKELNS-DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           + + LF+EL S      ++ +   +A+V+ ACA L A+++G ++H     NGLD D  + 
Sbjct: 199 QCLELFQELASVHGAGGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAAENGLDSDIAVW 258

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +S V  Y KCG    A ++ + M + D    S +I+GY N G ++    +F R       
Sbjct: 259 NSAVGFYAKCGRLKYARELFDGMAKKDAVSYSTMIAGYMNHGHVDMGLELFQRADVQGIS 318

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +WN++I+G I +   ++ L L ++M  +G+L +++TL+ ++ +      L   KQ HG+A
Sbjct: 319 IWNAVIAGLIQHGRQSDVLGLLNEMIGSGMLPNSATLSILIPSVHLFSTLLGVKQAHGYA 378

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +      + V +AL+D YSK G                                ++ ++
Sbjct: 379 IRNNYDQSIGVVTALIDAYSKAGF-------------------------------LDGSR 407

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F+   ++S I W S+I  ++ +G   EAL LF  M    +R+D  +  +V++ACA+  
Sbjct: 408 RVFKLTDDRSEIVWTSIISAVAAHGEAAEALHLFNEMVNAGIRLDTIAFTAVLTACAHTG 467

Query: 451 SLELGEQVF 459
            +    ++F
Sbjct: 468 KVADARKIF 476



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 182/397 (45%), Gaps = 72/397 (18%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           ++H   +++G     L ++N L+  Y   G+   A  +FDEMPRR+  SWN++I  + + 
Sbjct: 136 EVHAVAVQRG-FGDDLFVSNGLITAYANAGDSRSARAVFDEMPRRDVVSWNSLISSYARA 194

Query: 86  GHKEKSLQLFN----------VMP---------------QKNDFS--------------- 105
           G   + L+LF           V P               +  DF                
Sbjct: 195 GWYRQCLELFQELASVHGAGGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAAENGLDSD 254

Query: 106 ---WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
              WN  +  +AK G LK AR LF+ M +++A+++++MI  Y+ +G     + LF+  + 
Sbjct: 255 IAVWNSAVGFYAKCGRLKYARELFDGMAKKDAVSYSTMIAGYMNHGHVDMGLELFQRAD- 313

Query: 163 DLVERLQCDAFILATVI--GACADLAALEYGKQIHSHILVNGLD----------FDSVLG 210
             V+ +     ++A +I  G  +D+  L   + I S +L N             F ++LG
Sbjct: 314 --VQGISIWNAVIAGLIQHGRQSDVLGL-LNEMIGSGMLPNSATLSILIPSVHLFSTLLG 370

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
               + Y    +++ +  V           ++ALI  Y+  G ++ +RRVF  T D S +
Sbjct: 371 VKQAHGYAIRNNYDQSIGV-----------VTALIDAYSKAGFLDGSRRVFKLTDDRSEI 419

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +W S+IS   ++ E  EAL LF++M   G+  D     +VL+AC+  G +   +++    
Sbjct: 420 VWTSIISAVAAHGEAAEALHLFNEMVNAGIRLDTIAFTAVLTACAHTGKVADARKIFNSM 479

Query: 331 CKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSELK 366
             +  I+ V+   A ++  +S+ GM +DA +L + + 
Sbjct: 480 QAMFGINPVMEQYACMVSAFSRAGMLNDALELVNSMP 516



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 176/396 (44%), Gaps = 48/396 (12%)

Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS-MIHCYVRNGFAREAVRLFKE 159
            ++F  + LIS +++   L  AR +F+ +PR +  AWN+ +I   + +    +A RLF  
Sbjct: 47  PSNFLASKLISLYSRGAHLDDARRVFDAIPRPSVFAWNAILIALSLHSADPSDAARLFA- 105

Query: 160 LNSDLVERLQCDAFILATVIGACAD----LAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
                   +  D   L+ ++ + AD    L+AL    ++H+  +  G             
Sbjct: 106 -----ASGISPDEITLSALLKSLADSGPRLSALV--AEVHAVAVQRGF------------ 146

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
                GD              D F  + LI+ YAN G    AR VFD       V WNS+
Sbjct: 147 -----GD--------------DLFVSNGLITAYANAGDSRSARAVFDEMPRRDVVSWNSL 187

Query: 276 ISGYISNNEDTEALLLFHKMRR----NGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           IS Y       + L LF ++       GV  +  T+ASVL AC+ L  ++ G +VH  A 
Sbjct: 188 ISSYARAGWYRQCLELFQELASVHGAGGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAA 247

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G+  D+ V ++ +  Y+K G    A +LF  +   D +  +TMI  Y + G ++    
Sbjct: 248 ENGLDSDIAVWNSAVGFYAKCGRLKYARELFDGMAKKDAVSYSTMIAGYMNHGHVDMGLE 307

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F+    + +  WN++I GL Q+G   + L L   M    +  +  +L+ +I +    S+
Sbjct: 308 LFQRADVQGISIWNAVIAGLIQHGRQSDVLGLLNEMIGSGMLPNSATLSILIPSVHLFST 367

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           L   +Q          D    + T+L+D Y K GF+
Sbjct: 368 LLGVKQAHGYAIRNNYDQSIGVVTALIDAYSKAGFL 403



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 72/318 (22%)

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           +I  CAD   L  G+Q+H+ ++ + +                                P 
Sbjct: 20  LIQLCADTGHLAAGRQLHARLVASSV-------------------------------TPS 48

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS-MISGYISNNEDTEALLLFHKMR 296
           +F  S LIS Y+    ++DARRVFD     S   WN+ +I+  + + + ++A  LF    
Sbjct: 49  NFLASKLISLYSRGAHLDDARRVFDAIPRPSVFAWNAILIALSLHSADPSDAARLFAA-- 106

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHG--KQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
            +G+  D  TL+++L + +  G        +VH  A + G  DD+ V+            
Sbjct: 107 -SGISPDEITLSALLKSLADSGPRLSALVAEVHAVAVQRGFGDDLFVS------------ 153

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                              N +IT Y++ G    A+ +F  MP + ++SWNS+I   ++ 
Sbjct: 154 -------------------NGLITAYANAGDSRSARAVFDEMPRRDVVSWNSLISSYARA 194

Query: 415 GSPIEALDLFCNMNKL----DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           G   + L+LF  +  +     +R +  ++ASV+ ACA + +++ G +V       GLDSD
Sbjct: 195 GWYRQCLELFQELASVHGAGGVRPNNVTVASVLHACAQLKAVDFGVRVHRLAAENGLDSD 254

Query: 471 QIISTSLVDFYCKCGFIK 488
             +  S V FY KCG +K
Sbjct: 255 IAVWNSAVGFYAKCGRLK 272


>gi|302790562|ref|XP_002977048.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
 gi|300155024|gb|EFJ21657.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
          Length = 883

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 242/524 (46%), Gaps = 115/524 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C    ++  G+++H H +  G+ +    + + LLQMY +CG+  DA+ +F  +P
Sbjct: 49  AALLKHCGNAAALPQGRRIHAHIVASGLASDGF-LGDHLLQMYGKCGSVDDAIQVFHALP 107

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNM-------------- 108
           RR+ FSWN +I  F K  H  K++++F  M      P     S  +              
Sbjct: 108 RRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGRR 167

Query: 109 -------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                              L+  +A+ G L+ AR +F+ +  ++ I WNSMI  Y + G 
Sbjct: 168 IHGRISSGEFQSGIVVETGLVKMYARCGRLREAREVFDRIENKDVICWNSMIAAYAQGGH 227

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           + +A +L +E+    V   +      A ++GAC   ++LE GK+IHS  L  GL    ++
Sbjct: 228 SAQARQLCEEMEGFGV---KASDTTFAGILGAC---SSLEEGKKIHSRALARGLSSSIIV 281

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            ++L+++YGKC + ++A +V + ++  D    +ALI  Y   G+                
Sbjct: 282 QNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGR---------------- 325

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
                          + EAL L+ +M   G+  D  T  SVLSACS+   LE G+ +H  
Sbjct: 326 ---------------NREALELYKQMEGEGMEPDKVTFTSVLSACSNTNDLELGQALHAR 370

Query: 330 --ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             A K G  D V+VA+                                +I +Y  CGR++
Sbjct: 371 LLARKDGFSDGVLVAA--------------------------------LINMYVKCGRLD 398

Query: 388 DAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            +  IF++  + K+++ WN+MI    Q G    A+DL+  M +  L  D+ +L+S++SAC
Sbjct: 399 LSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSAC 458

Query: 447 ANISSLELGEQVFARVTIIGLDSDQ--IISTSLVDFYCKCGFIK 488
           A +  LE GEQV   + I   D  Q  ++  +L+  Y  CG I+
Sbjct: 459 AELKDLEKGEQVHVEI-IASRDCSQNPVVLNALISMYASCGEIR 501



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 141/588 (23%), Positives = 252/588 (42%), Gaps = 147/588 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C++   +  G+++H   +  G   S + +   L++MY RCG   +A  +FD +
Sbjct: 149 LSSVLGACSSLRDLEEGRRIHGR-ISSGEFQSGIVVETGLVKMYARCGRLREAREVFDRI 207

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQL------FNVMPQKNDFS---------------- 105
             ++   WN+MI  + + GH  ++ QL      F V      F+                
Sbjct: 208 ENKDVICWNSMIAAYAQGGHSAQARQLCEEMEGFGVKASDTTFAGILGACSSLEEGKKIH 267

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LIS + K  EL  AR +F+ +   + ++W ++I  Y ++G  R
Sbjct: 268 SRALARGLSSSIIVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNR 327

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF-DSVLG 210
           EA+ L+K++     E ++ D     +V+ AC++   LE G+ +H+ +L     F D VL 
Sbjct: 328 EALELYKQMEG---EGMEPDKVTFTSVLSACSNTNDLELGQALHARLLARKDGFSDGVLV 384

Query: 211 SSLVNL--------------------------------YGKCGDFNSANQVLNMMKE--- 235
           ++L+N+                                Y + G   +A  + +MMK+   
Sbjct: 385 AALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGL 444

Query: 236 -PDDFCLS------------------------------------ALISGYANCGKMNDAR 258
            PD+  LS                                    ALIS YA+CG++ +A+
Sbjct: 445 DPDESTLSSILSACAELKDLEKGEQVHVEIIASRDCSQNPVVLNALISMYASCGEIREAK 504

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
            VF R  +   V W  +IS Y+   +   AL L+ +M   GV     T+ +V++ACS++ 
Sbjct: 505 AVFKRMKNRDVVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEVTMLAVIAACSAME 564

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G                IV  AL D+             F+     DT +   +I+
Sbjct: 565 SLWEG----------------IVIHALTDSM-----------FFT-----DTAVQAALIS 592

Query: 379 VYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           +Y+ C R++ A  +FR + +   S   WN+M+   SQ G P E + L+  M+   ++ ++
Sbjct: 593 MYARCRRLDLACQVFRQVRHLESSANCWNAMLAAYSQLGLPEEGIRLYWEMSSTGIKANE 652

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            + A  ++AC+ + ++  G ++  +V+     SD  + T+LV  Y KC
Sbjct: 653 GTFAGALAACSMLGAVREGYRIHEQVSSSRYSSDLSLKTALVHMYAKC 700



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 189/462 (40%), Gaps = 114/462 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFL--KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           +L +C+  + + +G+ LH   L  K G  +  L  A  L+ MY++CG    +  +F    
Sbjct: 351 VLSACSNTNDLELGQALHARLLARKDGFSDGVLVAA--LINMYVKCGRLDLSSEIFQSCK 408

Query: 69  -RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
             +    WNAMI  + + G+   ++ L+++M Q+                          
Sbjct: 409 DTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELKDLEKGE 468

Query: 102 --------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                         N    N LIS +A  GE++ A+ +F  M  R+ ++W  +I  YV+ 
Sbjct: 469 QVHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQG 528

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   +A R  +     LVE +Q     +  VI AC+ + +L  G  IH+  L + + F  
Sbjct: 529 G---DARRALRLYRRMLVEGVQPTEVTMLAVIAACSAMESLWEGIVIHA--LTDSMFF-- 581

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--RTT 265
                                        D    +ALIS YA C +++ A +VF   R  
Sbjct: 582 ----------------------------TDTAVQAALISMYARCRRLDLACQVFRQVRHL 613

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           ++S+  WN+M++ Y       E + L+ +M   G+  +  T A  L+ACS LG +  G +
Sbjct: 614 ESSANCWNAMLAAYSQLGLPEEGIRLYWEMSSTGIKANEGTFAGALAACSMLGAVREGYR 673

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H          D+ + +AL+  Y+K                               C R
Sbjct: 674 IHEQVSSSRYSSDLSLKTALVHMYAK-------------------------------CNR 702

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           ++ A H+F  +    +++WN+MI   +QNG    AL+L+  M
Sbjct: 703 VDAAFHVFEQL-QPDVVAWNAMIAAYAQNGYAWHALELYSKM 743



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 31/197 (15%)

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
            H ++     +   T A++L  C +   L  G+++H H          IVAS L      
Sbjct: 33  LHHLQFQSPFQVRQTYAALLKHCGNAAALPQGRRIHAH----------IVASGLAS---- 78

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                            D  L + ++ +Y  CG ++DA  +F  +P +SL SWN +I   
Sbjct: 79  -----------------DGFLGDHLLQMYGKCGSVDDAIQVFHALPRRSLFSWNFIIAAF 121

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           ++N    +A+++F +M+   ++ D  +L+SV+ AC+++  LE G ++  R++     S  
Sbjct: 122 AKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGRRIHGRISSGEFQSGI 181

Query: 472 IISTSLVDFYCKCGFIK 488
           ++ T LV  Y +CG ++
Sbjct: 182 VVETGLVKMYARCGRLR 198


>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 556

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 231/484 (47%), Gaps = 105/484 (21%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN---VMPQ- 100
           N  L+  ++ G   DA  +FDEMP R+  SW  +I G++      ++L LF+   V+P  
Sbjct: 52  NSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGL 111

Query: 101 -------------------------------KNDFS-----WNMLISGFAKAGELKTART 124
                                          K+DF       + L+  + K  +++    
Sbjct: 112 RMDPFILSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQ 171

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ MP RN ++W ++I  +V  G+++E +  F ++      ++ CD++  A  + ACA+
Sbjct: 172 IFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQM---WRSKVVCDSYTFAIALKACAN 228

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L AL++G+QIH   L   L+  S + ++L  +Y K                         
Sbjct: 229 LGALDHGRQIHCQALKRSLEASSFVANTLATMYNK------------------------- 263

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                 CGK++   R+F++ T  + V W  +I+ Y  + ++  AL  F +M+  GV  + 
Sbjct: 264 ------CGKLDYGSRLFEKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEIGVSPND 317

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T A+V+S C++LG  E G+Q+HGH   +G++  + VA                      
Sbjct: 318 FTFAAVISGCANLGKTEWGEQLHGHMLCLGLMTFLSVA---------------------- 355

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                    N++IT+YS CG+++ A  +F+ +  + ++SW+++I G SQ G   EA +  
Sbjct: 356 ---------NSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYL 406

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M +   + ++ +LASV+S C N++ LE G+Q+ A    +GL+   +I ++L++ Y KC
Sbjct: 407 SRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTAMIQSALINMYSKC 466

Query: 485 GFIK 488
           G IK
Sbjct: 467 GSIK 470



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 210/504 (41%), Gaps = 107/504 (21%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD  I  LA  L+ C    +   G+ LH + +K   ++S   + + L+ MYM+       
Sbjct: 113 MDPFILSLA--LKICGLSLNESYGESLHGYSVKSDFVDSVF-VGSALVDMYMKFDKIQQG 169

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------------------- 98
             +F  MP RN  SW A+I GF+  G+ ++ L  F+ M                      
Sbjct: 170 CQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANL 229

Query: 99  -----------------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                             + + F  N L + + K G+L     LF  M  RN ++W  +I
Sbjct: 230 GALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMII 289

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y ++G    A+R F  +    V     + F  A VI  CA+L   E+G+Q+H H+L  
Sbjct: 290 TTYTQSGQEENALRAFIRMQEIGVSP---NDFTFAAVISGCANLGKTEWGEQLHGHMLCL 346

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL     + +S++ LY KCG   SA+ V   +   D    S +I+GY+  G   +A    
Sbjct: 347 GLMTFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYL 406

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
            R                               MRR G   +  TLASVLS C ++  LE
Sbjct: 407 SR-------------------------------MRREGPKPNELTLASVLSVCGNMAILE 435

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GKQ+H HA  VG+    ++ SAL++ YSK G   +A K+F E +  D +    MI  Y 
Sbjct: 436 QGKQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGY- 494

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                                         +++G   EA+DLF  + ++ L+ D  +   
Sbjct: 495 ------------------------------AEHGCRQEAIDLFEKIPRIGLKPDPVTFIG 524

Query: 442 VISACANISSLELGEQVFARVTII 465
           V++AC++   ++LG   F  ++ I
Sbjct: 525 VLTACSHAGLVDLGFHYFNSMSKI 548



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 185/406 (45%), Gaps = 74/406 (18%)

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
           L HK +   L N++        N  +    K G L+ AR +F++MP R+ I+W ++I  Y
Sbjct: 36  LSHKTQPSNLINML------EINSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGY 89

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V      EA+ LF ++   +V  L+ D FIL+  +  C       YG+ +H + + +  D
Sbjct: 90  VNAIDTTEALTLFSKMW--VVPGLRMDPFILSLALKICGLSLNESYGESLHGYSVKS--D 145

Query: 205 F-DSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           F DSV +GS+LV++Y K        Q+ + M                        R V  
Sbjct: 146 FVDSVFVGSALVDMYMKFDKIQQGCQIFHAMP----------------------IRNV-- 181

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                  V W ++I+G++      E L+ F +M R+ V+ D+ T A  L AC++LG L+H
Sbjct: 182 -------VSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDH 234

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+Q+H  A K  +     VA+ L   Y+K G      +LF ++ + + +    +IT Y+ 
Sbjct: 235 GRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYTQ 294

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
            G+ E+                               AL  F  M ++ +  + F+ A+V
Sbjct: 295 SGQEEN-------------------------------ALRAFIRMQEIGVSPNDFTFAAV 323

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           IS CAN+   E GEQ+   +  +GL +   ++ S++  Y KCG +K
Sbjct: 324 ISGCANLGKTEWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLK 369


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 241/519 (46%), Gaps = 107/519 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    + VG ++H   +K G   S   +   LL MY       DA   FD MP R
Sbjct: 106 VLKACSGFGDLSVGGKVHGRVIKCG-FESDAVVETSLLCMYGEMSCLDDACKAFDTMPIR 164

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------P------------------------- 99
           +  +W++++  F++ G   + L +F+ M      P                         
Sbjct: 165 DVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVH 224

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + N    N LI  + K G+L +A  LF ++P R    W  MI CY ++G  +
Sbjct: 225 GYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQ 284

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ +F ++      +++ +   +  V+ ACA L  ++ G+ +H  ++   +D       
Sbjct: 285 EALNVFAKMQE---FKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMD------- 334

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPD-DFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                                   P+ DF   AL+  YA+ G + D  +VF+   + + +
Sbjct: 335 ------------------------PELDFLGPALMELYADTGNLRDCHKVFETIKEKTIL 370

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++IS +  N +  EALLLF +M+  G++ D+ +LAS LSAC ++ F + G Q+HG+ 
Sbjct: 371 SWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYI 430

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G  +D  V +AL+D Y+K                               CG +  A 
Sbjct: 431 IKTGNFND-FVQNALIDMYAK-------------------------------CGFVHSAN 458

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  +  KSL++WNSMI G SQNG  +EA+ LF  M    ++MDK +  SVI AC+++ 
Sbjct: 459 KMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLG 518

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            LE G+ V  ++ + GL  D  + T+L D Y KCG ++M
Sbjct: 519 YLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQM 557



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 223/515 (43%), Gaps = 107/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C+   S+ +G+ +H + +++ I  S   + N L+ MY + G+   A  LF+ +P R
Sbjct: 207 VTEACSELGSLRLGRSVHGYVVRREI-ESNASLNNSLIVMYGKLGDLYSAERLFENVPCR 265

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------------------------- 95
               W  MI  + + G  +++L +F                                   
Sbjct: 266 MTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVH 325

Query: 96  -----NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                  M  + DF    L+  +A  G L+    +F  +  +  ++WN++I  + RNG  
Sbjct: 326 GFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQP 385

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LF ++ +   + L  D++ LA+ + AC  ++  + G QIH +I+           
Sbjct: 386 EEALLLFVQMQT---QGLMPDSYSLASSLSACGTISFSQLGAQIHGYII----------- 431

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                   K G+FN             DF  +ALI  YA CG ++ A ++F++  + S V
Sbjct: 432 --------KTGNFN-------------DFVQNALIDMYAKCGFVHSANKMFEKIKEKSLV 470

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WNSMI G+  N    EA+ LF +M  N V  D  T  SV+ ACS LG+LE GK VH   
Sbjct: 471 TWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKL 530

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G+  D  + +AL D YSK                               CG ++ A 
Sbjct: 531 IMYGLRKDSYLDTALTDMYSK-------------------------------CGELQMAH 559

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M  +S++SW+ MI G   +G     + LF  M    ++ +  +   ++SAC++  
Sbjct: 560 GVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAG 619

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++E G+  F  ++  G++        +VD   + G
Sbjct: 620 AVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAG 654



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 229/518 (44%), Gaps = 111/518 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L + C T  ++    QLH H    G L+   P + +L++ Y + G    +  +FD  P+ 
Sbjct: 7   LFRRCATSTTL---TQLHAHLFITG-LHRHPPASTKLIESYAQIGIFESSKRVFDTFPKP 62

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSWNMLISGFAKAGELKTARTL 125
           + F W  +I+ ++  G  E+++ L++ M      Q ++F +  ++   +  G+L     +
Sbjct: 63  DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKV 122

Query: 126 -----------------------------------FNDMPRRNAIAWNSMIHCYVRNGFA 150
                                              F+ MP R+ +AW+S++  +V+NG A
Sbjct: 123 HGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQA 182

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            E + +F ++ S+ VE    D+  + +V  AC++L +L  G+ +H +++   ++ ++ L 
Sbjct: 183 SEGLDMFSQMISEAVEP---DSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLN 239

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SL+ +YGK GD  SA                                R+F+      + 
Sbjct: 240 NSLIVMYGKLGDLYSA-------------------------------ERLFENVPCRMTA 268

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W  MIS Y  +    EAL +F KM+   +  +  T+  VL AC+ LG ++ G+ VHG  
Sbjct: 269 PWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFV 328

Query: 331 CKVGVIDDV-IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
            +  +  ++  +  AL++ Y+  G   D  K+F  +K    +  NT+I++++        
Sbjct: 329 IRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFT-------- 380

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                                  +NG P EAL LF  M    L  D +SLAS +SAC  I
Sbjct: 381 -----------------------RNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTI 417

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           S  +LG Q+   +   G + +  +  +L+D Y KCGF+
Sbjct: 418 SFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFV 454



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 173/381 (45%), Gaps = 65/381 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  +A+ G  ++++ +F+  P+ ++  W  +I CYV  GF  EAV L+ E+     ++ 
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQ--DQT 96

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           Q   F+  +V+ AC+    L  G ++H  ++  G + D+V+ +SL+ +YG+         
Sbjct: 97  QISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMS------- 149

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                      CL             +DA + FD       V W+S++  ++ N + +E 
Sbjct: 150 -----------CL-------------DDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEG 185

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L +F +M    V  D+ T+ SV  ACS LG L  G+ VHG+                   
Sbjct: 186 LDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVV----------------- 228

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
             +R + S+A             L N++I +Y   G +  A+ +F  +P +    W  MI
Sbjct: 229 --RREIESNAS------------LNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMI 274

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
              +Q+G   EAL++F  M +  +  ++ ++  V+ ACA +  ++ G  V   V    +D
Sbjct: 275 SCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMD 334

Query: 469 SD-QIISTSLVDFYCKCGFIK 488
            +   +  +L++ Y   G ++
Sbjct: 335 PELDFLGPALMELYADTGNLR 355



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 45/273 (16%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C T     +G Q+H + +K G  N    + N L+ MY +CG    A  +F+++  ++  +
Sbjct: 414 CGTISFSQLGAQIHGYIIKTGNFNDF--VQNALIDMYAKCGFVHSANKMFEKIKEKSLVT 471

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMP----------------------------------- 99
           WN+MI GF + G+  +++ LF+ M                                    
Sbjct: 472 WNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI 531

Query: 100 ----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
               +K+ +    L   ++K GEL+ A  +F+ M  R+ ++W+ MI  Y  +G     + 
Sbjct: 532 MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATIS 591

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           LF ++   L   ++ +      ++ AC+   A+E GK   + +   G++      + +V+
Sbjct: 592 LFNQM---LGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVD 648

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCL-SALISG 247
           L  + GD N A Q++  +  P +  +  AL++G
Sbjct: 649 LLSRAGDLNGAYQIITSLPFPANSSIWGALLNG 681



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 26/237 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++Q+C+    +  GK +H   +  G+   +  +   L  MY +CG    A  +FD M  R
Sbjct: 510 VIQACSHLGYLEKGKWVHHKLIMYGLRKDSY-LDTALTDMYSKCGELQMAHGVFDRMSER 568

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW+ MI G+   G    ++ LFN M     + ND ++  ++S  + AG ++  +  F
Sbjct: 569 SIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYF 628

Query: 127 NDM------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           N M      P+ +  A   M+    R G    A ++   L          ++ I   ++ 
Sbjct: 629 NSMSEFGVEPKHDHFA--CMVDLLSRAGDLNGAYQIITSLP------FPANSSIWGALLN 680

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSV---LGSSLVNLYGKCGDFNSANQVLNMMK 234
            C     ++  K I  ++    LD D+      + L N+Y + G ++   +V +MMK
Sbjct: 681 GCRIHKRIDIIKSIEKNL----LDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMK 733


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 240/516 (46%), Gaps = 109/516 (21%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L++C  +   + VG ++H   +K G+ +  + I   LL MY + GN +DA  +FD MP 
Sbjct: 106 VLRACAGSREHLSVGGKVHGRIIKGGVDDDAV-IETSLLCMYGQTGNLSDAEKVFDGMPV 164

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK---------------------- 101
           R+  +W+ ++   ++ G   K+L++F  M      P                        
Sbjct: 165 RDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSV 224

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      ++   N L++ ++K G+L ++  +F  + ++NA++W +MI  Y R  F+
Sbjct: 225 HGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFS 284

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            +A+R F E+    +E    +   L +V+ +C  +  +  GK +H   +   LD      
Sbjct: 285 EKALRSFSEMIKSGIEP---NLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELD------ 335

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTDTSS 269
                                    P+   LS AL+  YA CGK++D   V    +D + 
Sbjct: 336 -------------------------PNYESLSLALVELYAECGKLSDCETVLRVVSDRNI 370

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNS+IS Y       +AL LF +M    +  DA TLAS +SAC + G +  GKQ+HGH
Sbjct: 371 VAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGH 430

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             +  V D+ +                                 N++I +YS  G ++ A
Sbjct: 431 VIRTDVSDEFV--------------------------------QNSLIDMYSKSGSVDSA 458

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F  + ++S+++WNSM+ G SQNG+ +EA+ LF  M    L M++ +  +VI AC++I
Sbjct: 459 STVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSI 518

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            SLE G+ V  ++ I GL  D    T+L+D Y KCG
Sbjct: 519 GSLEKGKWVHHKLIISGL-KDLFTDTALIDMYAKCG 553



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 223/520 (42%), Gaps = 112/520 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +++ C     + + + +H    +K   L+ TL   N LL MY +CG+   +  +F+++ +
Sbjct: 208 VVEGCAELGCLRIARSVHGQITRKMFDLDETL--CNSLLTMYSKCGDLLSSERIFEKIAK 265

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM------------------------------- 98
           +N  SW AMI  + +    EK+L+ F+ M                               
Sbjct: 266 KNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSV 325

Query: 99  ----------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                     P     S   L+  +A+ G+L    T+   +  RN +AWNS+I  Y   G
Sbjct: 326 HGFAVRRELDPNYESLSL-ALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRG 384

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ LF+++   + +R++ DAF LA+ I AC +   +  GKQIH H++   +     
Sbjct: 385 MVIQALGLFRQM---VTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVS---- 437

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                       D+F  ++LI  Y+  G ++ A  VF++    S
Sbjct: 438 ----------------------------DEFVQNSLIDMYSKSGSVDSASTVFNQIKHRS 469

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSM+ G+  N    EA+ LF  M  + +  +  T  +V+ ACSS+G LE GK VH 
Sbjct: 470 VVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVH- 528

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H   +  + D+   +AL+D Y+K                               CG +  
Sbjct: 529 HKLIISGLKDLFTDTALIDMYAK-------------------------------CGDLNA 557

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +FR M ++S++SW+SMI     +G    A+  F  M +   + ++    +V+SAC +
Sbjct: 558 AETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGH 617

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             S+E G+  F  +   G+  +       +D   + G +K
Sbjct: 618 SGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLLSRSGDLK 657



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 165/396 (41%), Gaps = 73/396 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC     I  GK +H   +++ +  +   ++  L+++Y  CG  +D   +   +
Sbjct: 306 LYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVV 365

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
             RN  +WN++I  +   G   ++L LF  M  +                          
Sbjct: 366 SDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGK 425

Query: 102 ------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                       ++F  N LI  ++K+G + +A T+FN +  R+ + WNSM+  + +NG 
Sbjct: 426 QIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGN 485

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           + EA+ LF  +       L+ +      VI AC+ + +LE GK +H  ++++GL      
Sbjct: 486 SVEAISLFDYMYHSY---LEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK----- 537

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                                      D F  +ALI  YA CG +N A  VF   +  S 
Sbjct: 538 ---------------------------DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSI 570

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V W+SMI+ Y  +     A+  F++M  +G   +     +VLSAC   G +E GK     
Sbjct: 571 VSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNL 630

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
               GV  +    +  +D  S+ G   +A +   E+
Sbjct: 631 MKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEM 666



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 36/252 (14%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D   ++ LI  YA  G  + +R VF+      S M+  +I   +  +    A+ L+H++ 
Sbjct: 33  DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 92

Query: 297 RNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
                       SVL AC+  G  EH   G +VHG   K GV DD ++ ++LL       
Sbjct: 93  SETTQISKFVFPSVLRACA--GSREHLSVGGKVHGRIIKGGVDDDAVIETSLL------- 143

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                    +Y   G + DA+ +F  MP + L++W++++    +
Sbjct: 144 ------------------------CMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLE 179

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG  ++AL +F  M    +  D  ++ SV+  CA +  L +   V  ++T    D D+ +
Sbjct: 180 NGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETL 239

Query: 474 STSLVDFYCKCG 485
             SL+  Y KCG
Sbjct: 240 CNSLLTMYSKCG 251


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 156/604 (25%), Positives = 254/604 (42%), Gaps = 154/604 (25%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC------ 54
           M+T+  YLA LLQ+C    +   GK +H H L+  + + T  ++NRL++ Y +C      
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTF-LSNRLIEFYAKCNAIDAS 59

Query: 55  -------------------------GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89
                                        DA +LF EMP RN  SWN +I    + G ++
Sbjct: 60  RRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQ 119

Query: 90  KSLQLFNVMPQK---------------------------------------NDFSWNMLI 110
           K+L ++  M ++                                       N +  N L+
Sbjct: 120 KALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALL 179

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
             +AK   +  A   F D+P  N +++ +M+     +    EA RLF+ +   L  R+  
Sbjct: 180 GMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLM---LRNRIHV 236

Query: 171 DAFILATVIGACADLAALEYG--------------KQIHSHILVNGLDFDSVLGSSLVNL 216
           D+  L++V+G C+     E+G              +Q+H   + +G + D  L +SL+++
Sbjct: 237 DSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDM 296

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN-------------------------- 250
           Y K G+ +SA  +   M E      + +I+GY                            
Sbjct: 297 YAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITY 356

Query: 251 ---------CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                     G +   R++FD  +  S   WN+++SGY  N    EA+ LF +M+   V 
Sbjct: 357 VNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVH 416

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D +TLA +LS+ + +  LE G+QVH  + K     D+ +AS L+  YSK          
Sbjct: 417 PDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSK---------- 466

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                                CG++E AK IF  +    ++ WNSM+ GLS N    EA 
Sbjct: 467 ---------------------CGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAF 505

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             F  M +  +   +FS A+V+S CA +SSL  G QV +++   G  +D  + ++L+D Y
Sbjct: 506 TFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMY 565

Query: 482 CKCG 485
            KCG
Sbjct: 566 SKCG 569



 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 212/441 (48%), Gaps = 72/441 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+Q+H   +K G   S L + N LL MY + GN   A ++F  MP  +  SWN MI G+ 
Sbjct: 271 GQQVHCLTIKHG-FESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYG 329

Query: 84  KLGHKEKSLQLFNVMP----QKNDFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
           +     K+++    M     + ++ ++ NML++   K+G+++  R +F+ M   +  +WN
Sbjct: 330 QKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACI-KSGDIEAGRQMFDGMSSPSLSSWN 388

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           +++  Y +N   +EAV+LF+E+       +  D   LA ++ + A +  LE G+Q+H+  
Sbjct: 389 TILSGYSQNENHKEAVKLFREMQ---FRSVHPDRTTLAIILSSLAGMMLLEGGRQVHA-- 443

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
                                     S   V       D +  S LI  Y+ CGK+  A+
Sbjct: 444 -------------------------VSQKAVF----RTDIYLASGLIGMYSKCGKVEMAK 474

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           R+FDR  +   V WNSM++G   N+ D EA   F KMR  G+     + A+VLS C+ L 
Sbjct: 475 RIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLS 534

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G+QVH    + G ++D  V SAL+D YSK                           
Sbjct: 535 SLSQGRQVHSQIAREGYMNDAFVGSALIDMYSK--------------------------- 567

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
               CG ++ A+ +F  M  K+ ++WN MI G +QNG   EA+ L+ +M     + D  +
Sbjct: 568 ----CGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGIT 623

Query: 439 LASVISACANISSLELGEQVF 459
             +V++AC++   ++ G ++F
Sbjct: 624 FVAVLTACSHSGLVDTGIKIF 644



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 195/447 (43%), Gaps = 99/447 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM--- 67
           +L +C     I  G+Q+       G+ + +L   N +L  Y +  N  +A+ LF EM   
Sbjct: 359 MLVACIKSGDIEAGRQMF-----DGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFR 413

Query: 68  ---PRRNCFSWN-AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-----LISGFAKAGE 118
              P R   +   + + G M L   E   Q+  V  QK  F  ++     LI  ++K G+
Sbjct: 414 SVHPDRTTLAIILSSLAGMMLL---EGGRQVHAV-SQKAVFRTDIYLASGLIGMYSKCGK 469

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           ++ A+ +F+ +   + + WNSM+     N   +EA   FK++    +   Q   F  ATV
Sbjct: 470 VEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQ---FSYATV 526

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +  CA L++L  G+Q+HS I   G   D+ +GS+L+++Y KCGD ++A  V +MM     
Sbjct: 527 LSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMM----- 581

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                        GK              ++V WN MI GY  N    EA+LL+  M  +
Sbjct: 582 ------------LGK--------------NTVTWNEMIHGYAQNGCGDEAVLLYEDMIGS 615

Query: 299 GVLEDASTLASVLSACSSLGFLEHG-------KQVHG---------------------HA 330
           G   D  T  +VL+ACS  G ++ G       +Q HG                     H 
Sbjct: 616 GEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHE 675

Query: 331 CKVGVID------DVIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            +V +ID      D I+   LL +   Y+   +   A +    L   ++     +  +YS
Sbjct: 676 AEV-LIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYS 734

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMI 408
           S GR +DAK +      + L+S+N ++
Sbjct: 735 SLGRWDDAKAV------RELMSYNQVV 755


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 240/518 (46%), Gaps = 107/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C     I + KQ+H+  +K G +   L +AN+LL++Y+RCG    A  +FD++ ++
Sbjct: 124 ILQRCLKQEDILLAKQVHVCIIKSG-MEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKK 182

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW-------------------- 106
           N + W  MI G+ + GH E ++++++ M Q+    N+ ++                    
Sbjct: 183 NIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIH 242

Query: 107 -NMLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            +++ SGF               K G ++ A+ +F+ M  RN I+W  MI      G  +
Sbjct: 243 AHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQ 302

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  LF ++     E    +++   +++ A A   ALE+ K++HSH +  GL  D  +G+
Sbjct: 303 EAFHLFLQMQR---EGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN 359

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV++Y K G  + A  V + M E D F  + +I G A  G+                  
Sbjct: 360 ALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGR------------------ 401

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL--SACSSLGFLEHGKQVHGH 329
                          EA  LF +M+RNG L + +T  S+L  SA +S   LE  K VH H
Sbjct: 402 -------------GQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKH 448

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           A + G I D+ + +AL+  Y+K                               CG I+DA
Sbjct: 449 AEEAGFISDLRIGNALIHMYAK-------------------------------CGSIDDA 477

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  M ++ +ISWN+M+ GL+QNG   EA  +F  M +  L  D  +  S+++   + 
Sbjct: 478 RLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGST 537

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +LE   +V       GL SD  + ++ +  Y +CG I
Sbjct: 538 DALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSI 575



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 144/511 (28%), Positives = 225/511 (44%), Gaps = 107/511 (20%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K +H H  + G + S L I N L+ MY +CG+  DA L+FD M  R+  SWNAM+ G  +
Sbjct: 443 KVVHKHAEEAGFI-SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQ 501

Query: 85  LGHKEKSLQLFNVMPQK-------------------NDFSW----------NMLISGFA- 114
            G   ++  +F  M Q+                   +   W            LIS F  
Sbjct: 502 NGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRV 561

Query: 115 ---------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
                    + G +  AR LF+ +  R+   WN+MI    +    REA+ LF ++     
Sbjct: 562 GSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQR--- 618

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           E    DA     ++ A  D  ALE+ K++HSH    GL  D  +G++LV+ Y KCG+   
Sbjct: 619 EGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKY 677

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           A QV                               FD   + +   W  MI G   +   
Sbjct: 678 AKQV-------------------------------FDDMVERNVTTWTMMIGGLAQHGCG 706

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            +A   F +M R G++ DA+T  S+LSAC+S G LE  K+VH HA   G++ D+ V +AL
Sbjct: 707 HDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNAL 766

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y+K                               CG I+DA+ +F  M  + + SW 
Sbjct: 767 VHMYAK-------------------------------CGSIDDARSVFDDMVERDVFSWT 795

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI- 464
            MI GL+Q+G  +EALD F  M     + + +S  +V++AC++   ++ G + F  +T  
Sbjct: 796 VMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQD 855

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
            G++      T +VD   + G ++  E +++
Sbjct: 856 YGIEPTMEHYTCMVDLLGRAGLLEEAELFIL 886



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 133/294 (45%), Gaps = 41/294 (13%)

Query: 201 NGLDFDSVLGSSLVNLYGKC---GDFNSANQV----LNMMKEPDDFCLSALISGYANCGK 253
            G+  DS    S VN+  +C    D   A QV    +    E + +  + L+  Y  CG+
Sbjct: 112 QGIAIDSF---SYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGR 168

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           +  AR+VFD+    +  +W +MI GY       +A+ ++ KMR+     +  T  S+L A
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKA 228

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C     L+ GK++H H  + G   DV V +AL++ Y K                      
Sbjct: 229 CCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVK---------------------- 266

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                    CG IEDA+ IF  M  +++ISW  MI GL+  G   EA  LF  M +    
Sbjct: 267 ---------CGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            + ++  S+++A A+  +LE  ++V +     GL  D  +  +LV  Y K G I
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSI 371



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 66/115 (57%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N ++ VY  CGR++ A+ +F  +  K++  W +MI G ++ G   +A+ ++  M +   +
Sbjct: 157 NKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ 216

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++ +  S++ AC    +L+ G+++ A +   G  SD  + T+LV+ Y KCG I+
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIE 271



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  ++   K++H H +  G++ S L + N L+ MY +CG+  DA  +FD+M  R
Sbjct: 731 ILSACASTGALEWVKEVHNHAVSAGLV-SDLRVGNALVHMYAKCGSIDDARSVFDDMVER 789

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           + FSW  MI G  + G   ++L  F  M     + N +S+  +++  + AG +   R  F
Sbjct: 790 DVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQF 849

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M +   I      +  M+    R G   EA  LF      L   ++ D      ++GA
Sbjct: 850 LSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEA-ELFI-----LNMPIEPDDAPWGALLGA 903

Query: 182 CADLAALE 189
           C     LE
Sbjct: 904 CVTYGNLE 911


>gi|255579244|ref|XP_002530468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530013|gb|EEF31938.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 801

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/546 (24%), Positives = 242/546 (44%), Gaps = 100/546 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++ +Y++     DA  LFD    +N  +W  ++ G+ K G  E++   F  MP++N  
Sbjct: 63  NSMISVYLQNNKIPDAKSLFDAFEYKNVRTWTILLSGYAKAGLIEEAETFFRSMPERNVV 122

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN +++GF + G+L+ AR  F +MP RN  +WNS+I  Y ++G  +EA  LF  +    
Sbjct: 123 SWNAMLAGFVQNGDLRNARKCFYEMPERNVSSWNSIITGYCKSGLMKEARELFDRME--- 179

Query: 165 VERLQCDAFILATVI--------GACADLAALEYGKQIHSHILVNGL------------- 203
            ER      ++A+          G C  L  +  G +    + V GL             
Sbjct: 180 -ERSSVSWMVMASGYVEISQYREGWCVFLMMMNSGVRPDQAVFVVGLSAIMGFNDLGMIG 238

Query: 204 -----------DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
                      + D V+ ++++N Y +CG  + A +    M   +++ L+++I+ ++  G
Sbjct: 239 SFRTLVMKMGYEEDVVVATAILNAYARCGSLDDAFKFFESMPARNEYSLTSMIAAFSQRG 298

Query: 253 KMND-------------------------------ARRVFDRTTDTSSVMWNSMISGY-- 279
           +++D                               A+ +FD   + + V WN+M+ GY  
Sbjct: 299 RLDDAIALYEKDSKQGDATRTTIIAAYMHNGRIDEAKHIFDEIVNPNVVAWNAMLGGYAQ 358

Query: 280 -----------------------------ISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                        + N    E L LF ++ R G++   S   S 
Sbjct: 359 NGMLEEAKAIFLQMPVRNAVSWAAMIGGFVQNGNGKEGLKLFTELHRTGMIPTHSCFTSA 418

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+++G +E GKQ+H  + K+    +  V + L+  Y+K     D   +F+ + V DT
Sbjct: 419 LFACANIGDVEIGKQIHSLSIKMRCQSNPFVGNGLISMYAKCNSVEDVSHVFNSMNVRDT 478

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +  N++++  S    + DA++ F  MP +  +SW ++I           A  LF +M   
Sbjct: 479 VSWNSLVSGLSWNYLLNDAQNTFDNMPTRDAVSWAAIISAHVHADQGEIAWQLFLDMLSA 538

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
            L+ +  ++ S++SAC N+   +LGEQ  A V   G +S   +  +L+  Y KCG   +D
Sbjct: 539 GLKPNDLTITSLLSACGNLGVTKLGEQFHALVLKHGFNSCLHVCNALISMYFKCG--NVD 596

Query: 491 EYYLMQ 496
             Y+ +
Sbjct: 597 GLYVFE 602



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 220/471 (46%), Gaps = 76/471 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A  +L  Y RCG+  DA   F+ MP RN +S  +MI  F + G  + ++ L+    ++ 
Sbjct: 255 VATAILNAYARCGSLDDAFKFFESMPARNEYSLTSMIAAFSQRGRLDDAIALYEKDSKQG 314

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY------------------ 144
           D +   +I+ +   G +  A+ +F+++   N +AWN+M+  Y                  
Sbjct: 315 DATRTTIIAAYMHNGRIDEAKHIFDEIVNPNVVAWNAMLGGYAQNGMLEEAKAIFLQMPV 374

Query: 145 -------------VRNGFAREAVRLFKELN-SDLVERLQCDAFILATVIGACADLAALEY 190
                        V+NG  +E ++LF EL+ + ++    C      + + ACA++  +E 
Sbjct: 375 RNAVSWAAMIGGFVQNGNGKEGLKLFTELHRTGMIPTHSC----FTSALFACANIGDVEI 430

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQIHS  +      +  +G+ L+++Y KC      + V N M   D    ++L+SG + 
Sbjct: 431 GKQIHSLSIKMRCQSNPFVGNGLISMYAKCNSVEDVSHVFNSMNVRDTVSWNSLVSGLSW 490

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
              +NDA+  FD      +V W ++IS ++  ++   A  LF  M   G+  +  T+ S+
Sbjct: 491 NYLLNDAQNTFDNMPTRDAVSWAAIISAHVHADQGEIAWQLFLDMLSAGLKPNDLTITSL 550

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSAC +LG  + G+Q H    K G                      ++C     L V   
Sbjct: 551 LSACGNLGVTKLGEQFHALVLKHGF---------------------NSC-----LHV--- 581

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
              N +I++Y  CG + D  ++F  M ++ +++WN+++ G +QNG   EA  +F  M + 
Sbjct: 582 --CNALISMYFKCGNV-DGLYVFEEMIDRDIVTWNTVLAGCAQNGLCKEATKVFEQMAEA 638

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGL-DSDQIISTSLVDF 480
           ++  D+ S   V+SAC++   +        R   I +  ++Q ++ SL+ F
Sbjct: 639 EVFPDEISFLGVLSACSHAGGI-------VRAWFICIKQTEQAVNHSLIRF 682



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 143/341 (41%), Gaps = 51/341 (14%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H G+      +   I+N  +   N +L  Y + G   +A  +F +MP RN  SW AMI 
Sbjct: 326 MHNGRIDEAKHIFDEIVNPNVVAWNAMLGGYAQNGMLEEAKAIFLQMPVRNAVSWAAMIG 385

Query: 81  GFMKLGHKEKSLQLFN------VMP---------------------------------QK 101
           GF++ G+ ++ L+LF       ++P                                 Q 
Sbjct: 386 GFVQNGNGKEGLKLFTELHRTGMIPTHSCFTSALFACANIGDVEIGKQIHSLSIKMRCQS 445

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N F  N LIS +AK   ++    +FN M  R+ ++WNS++     N    +A   F  + 
Sbjct: 446 NPFVGNGLISMYAKCNSVEDVSHVFNSMNVRDTVSWNSLVSGLSWNYLLNDAQNTFDNMP 505

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           +        DA   A +I A       E   Q+   +L  GL  + +  +SL++  G  G
Sbjct: 506 TR-------DAVSWAAIISAHVHADQGEIAWQLFLDMLSAGLKPNDLTITSLLSACGNLG 558

Query: 222 DFNSANQVLNM-MKEPDDFCL---SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                 Q   + +K   + CL   +ALIS Y  CG + D   VF+   D   V WN++++
Sbjct: 559 VTKLGEQFHALVLKHGFNSCLHVCNALISMYFKCGNV-DGLYVFEEMIDRDIVTWNTVLA 617

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           G   N    EA  +F +M    V  D  +   VLSACS  G
Sbjct: 618 GCAQNGLCKEATKVFEQMAEAEVFPDEISFLGVLSACSHAG 658



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 8/234 (3%)

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G++ DAR +FD      +V WNSMIS Y+ NN+  +A  LF       V     T   +L
Sbjct: 42  GRVKDARHLFDTMPQRDAVSWNSMISVYLQNNKIPDAKSLFDAFEYKNV----RTWTILL 97

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           S  +  G +E  +       +     +V+  +A+L  + + G   +A K F E+   +  
Sbjct: 98  SGYAKAGLIEEAETFFRSMPE----RNVVSWNAMLAGFVQNGDLRNARKCFYEMPERNVS 153

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
             N++IT Y   G +++A+ +F  M  +S +SW  M  G  +     E   +F  M    
Sbjct: 154 SWNSIITGYCKSGLMKEARELFDRMEERSSVSWMVMASGYVEISQYREGWCVFLMMMNSG 213

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +R D+      +SA    + L +       V  +G + D +++T++++ Y +CG
Sbjct: 214 VRPDQAVFVVGLSAIMGFNDLGMIGSFRTLVMKMGYEEDVVVATAILNAYARCG 267



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/326 (18%), Positives = 141/326 (43%), Gaps = 47/326 (14%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+V  +S++++Y +      A  + +  +  +    + L+SGYA  G + +A   F    
Sbjct: 58  DAVSWNSMISVYLQNNKIPDAKSLFDAFEYKNVRTWTILLSGYAKAGLIEEAETFFRSMP 117

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           + + V WN+M++G++ N +   A   F++M    V    S+  S+++     G ++  ++
Sbjct: 118 ERNVVSWNAMLAGFVQNGDLRNARKCFYEMPERNV----SSWNSIITGYCKSGLMKEARE 173

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKR------------GMPSD---------ACKLFSE 364
           +     +   +  +++AS  ++    R            G+  D         A   F++
Sbjct: 174 LFDRMEERSSVSWMVMASGYVEISQYREGWCVFLMMMNSGVRPDQAVFVVGLSAIMGFND 233

Query: 365 LKVY--------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           L +               D ++   ++  Y+ CG ++DA   F +MP ++  S  SMI  
Sbjct: 234 LGMIGSFRTLVMKMGYEEDVVVATAILNAYARCGSLDDAFKFFESMPARNEYSLTSMIAA 293

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            SQ G   +A+ L+    + D +    +  ++I+A  +   ++  + +F  +    ++ +
Sbjct: 294 FSQRGRLDDAIALY----EKDSKQGDATRTTIIAAYMHNGRIDEAKHIFDEI----VNPN 345

Query: 471 QIISTSLVDFYCKCGFIKMDEYYLMQ 496
            +   +++  Y + G ++  +   +Q
Sbjct: 346 VVAWNAMLGGYAQNGMLEEAKAIFLQ 371



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 35/143 (24%)

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITV------------------------------- 379
           K G   DA  LF  +   D +  N+MI+V                               
Sbjct: 40  KLGRVKDARHLFDTMPQRDAVSWNSMISVYLQNNKIPDAKSLFDAFEYKNVRTWTILLSG 99

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+  G IE+A+  FR+MP ++++SWN+M+ G  QNG    A   F  M + ++     S 
Sbjct: 100 YAKAGLIEEAETFFRSMPERNVVSWNAMLAGFVQNGDLRNARKCFYEMPERNVS----SW 155

Query: 440 ASVISACANISSLELGEQVFARV 462
            S+I+       ++   ++F R+
Sbjct: 156 NSIITGYCKSGLMKEARELFDRM 178



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           N  I      GR++DA+H+F TMP +  +SWNSMI    QN    +A  LF
Sbjct: 32  NKKIQELGKLGRVKDARHLFDTMPQRDAVSWNSMISVYLQNNKIPDAKSLF 82


>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
          Length = 627

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 205/380 (53%), Gaps = 8/380 (2%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I+   +AG+  +AR +F+ MPRR+A+AWN+M+  YVR G  R+A+ LF    +       
Sbjct: 19  IASLGRAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLFSRAPAP------ 72

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            DAF L   + A A L +   G Q+H+ ++  GL     +G++LV++Y KC   + A + 
Sbjct: 73  -DAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKCARADDAARA 131

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M+E +     +L+  Y     +  A+ +FD+  + ++V WN+++ GY  +    + L
Sbjct: 132 FGEMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNANQCL 191

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
           LLF+KMR  G+  D +TL  +  AC+ L     G  +H  A + G      V+++L+  Y
Sbjct: 192 LLFNKMRAEGMACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSLISLY 251

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           SK  +  DA ++F  ++V   +  N++I  Y   G +E A  +FR +P  ++ISW +MI 
Sbjct: 252 SKFSLLDDAVRIFESMEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIG 311

Query: 410 GLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           GL++NG   EAL LF  M   + +  D F+  SV+ ACA  +SL  G  V  R    G  
Sbjct: 312 GLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFA 371

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           +   ++ SL+D Y KCG ++
Sbjct: 372 AYLYVANSLMDMYAKCGDVE 391



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 210/467 (44%), Gaps = 68/467 (14%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
            G QLH   ++ G L + LP+ N L+ MY +C    DA   F EM  RN           
Sbjct: 92  AGAQLHARLIRAG-LRALLPVGNTLVDMYAKCARADDAARAFGEMRERNAL--------- 141

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                 SW  L+  +  +  L  A+ LF+ MP RN +AWN+++ 
Sbjct: 142 ----------------------SWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLM 179

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y R+G A + + LF ++ +   E + CD   L  +  AC +LA    G  IH   + +G
Sbjct: 180 GYSRSGNANQCLLLFNKMRA---EGMACDGATLCILADACTELAHPSAGSAIHKVAVQSG 236

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
               + + +SL++LY K    + A ++   M+       ++LI  Y   G +  A  +F 
Sbjct: 237 WSAMAEVSNSLISLYSKFSLLDDAVRIFESMEVRTIVSWNSLIDSYMKLGCVEKATSLFR 296

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLE 321
           R  +T+ + W +MI G   N    EAL LF  M     +  D  T  SVL AC++   L 
Sbjct: 297 RVPETNVISWTAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASLA 356

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G+ VH  A + G    + VA++L+D Y+K                              
Sbjct: 357 SGRMVHCRAFRSGFAAYLYVANSLMDMYAK------------------------------ 386

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG +E   ++F  + NK L+SWN+M+ G + NG   EAL ++ +M   ++  D+ + A 
Sbjct: 387 -CGDVEGGTNVFGAIVNKDLVSWNTMLFGFAINGWANEALVVYDSMKSHEVCPDEVTFAG 445

Query: 442 VISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +++AC +   LE GE  F + V++ G+       + ++D Y + G I
Sbjct: 446 LLTACNHSGLLEHGESFFESMVSVHGIQPKPEHLSCILDMYARSGNI 492


>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
          Length = 824

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 154/568 (27%), Positives = 245/568 (43%), Gaps = 118/568 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +    +LQ C     +  G+Q+H   LK G        I  +L+  Y +C     A +LF
Sbjct: 63  EIFGEILQGCVYXRDLRTGQQIHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLF 122

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------ 112
            ++  RN FSW A+I    ++G  E +L  F  M +   F  N ++              
Sbjct: 123 SKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSR 182

Query: 113 ---------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                                      + K G L  AR +F+++P RN +AWN+++  YV
Sbjct: 183 FGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 242

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG   EA+RL  ++  + VE  +     ++T + A A++  +E GKQ H+  +VNGL+ 
Sbjct: 243 QNGMNEEAIRLLSDMRKEGVEPTR---VTVSTCLSASANMRGIEEGKQSHAIAIVNGLEL 299

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D++LG+S++N Y K G                                ++ A  +FDR  
Sbjct: 300 DNILGTSILNFYCKVG-------------------------------LIDYAEMIFDRMI 328

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           +   V WN +ISGY+       A+ +   MR   +  D  TL++++SA +    L+ GK+
Sbjct: 329 EKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKE 388

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG- 384
           V  +  +     D+++AS  +D Y+K G   DA K+F      D IL NT++  Y+  G 
Sbjct: 389 VQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGL 448

Query: 385 ----------------------------------RIEDAKHIF------RTMPNKSLISW 404
                                             ++ +AK +F       T PN  +ISW
Sbjct: 449 SGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGTFPN--MISW 506

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            +M+ GL QNG   EA+     M +  +R + FS+   +SAC N++SL  G  +   +  
Sbjct: 507 TTMMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSACVNLASLHFGRSIHGYIIR 566

Query: 465 IGLDSDQI-ISTSLVDFYCKCGFIKMDE 491
               S    I TSLVD Y KCG I   E
Sbjct: 567 NQQHSSSASIETSLVDMYAKCGDINKAE 594



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/504 (23%), Positives = 229/504 (45%), Gaps = 98/504 (19%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H +  K G L+  + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 173 KACGALQWSRFGRGVHGYVAKAG-LHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 231

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++L + M ++               S NM            
Sbjct: 232 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEGKQSHAI 291

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G +  A  +F+ M  ++ + WN +I  YV  G    A
Sbjct: 292 AIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLISGYVHQGLVENA 351

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +    +E L+ D   L+T++ A A    L+ GK++  + + +  + D VL S+ 
Sbjct: 352 IYMCQLMR---LENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTA 408

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC---------------------- 251
           V++Y KCG    A +V +   + D    + L++ YA                        
Sbjct: 409 VDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNV 468

Query: 252 -------------GKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHK 294
                        G++N+A+ +F +   + +    + W +M++G + N    EA+L   K
Sbjct: 469 ITWNLIILSLLRNGQVNEAKEMFLQMQSSGTFPNMISWTTMMNGLVQNGCSEEAILFLRK 528

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRG 353
           M+ +G+  +  ++   LSAC +L  L  G+ +HG+  +         + ++L+D Y+K G
Sbjct: 529 MQESGMRPNVFSITVALSACVNLASLHFGRSIHGYIIRNQQHSSSASIETSLVDMYAKCG 588

Query: 354 MPSDA-----CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
             + A      KL+SEL +Y     N MI+ Y+  G +++A  ++R++     I  +++ 
Sbjct: 589 DINKAERVFGSKLYSELPLY-----NAMISAYALYGNVKEAVALYRSLEEDVGIKPDNIT 643

Query: 409 V-----GLSQNGSPIEALDLFCNM 427
           +       +  G   +A+++F +M
Sbjct: 644 ITNVLSACNHAGDINQAIEIFTDM 667



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 84/181 (46%), Gaps = 16/181 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S+H G+ +H + ++    +S+  I   L+ MY +CG+   A  +F       
Sbjct: 545 LSACVNLASLHFGRSIHGYIIRNQQHSSSASIETSLVDMYAKCGDINKAERVFGSKLYSE 604

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
              +NAMI  +   G+ ++++ L+     +V  + ++ +   ++S    AG++  A  +F
Sbjct: 605 LPLYNAMISAYALYGNVKEAVALYRSLEEDVGIKPDNITITNVLSACNHAGDINQAIEIF 664

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
            DM  ++ +      +  M+      G   +A+ L +E+        + DA ++ +++ +
Sbjct: 665 TDMVSKHGMKPCLEHYGLMVDLLASAGETEKALSLIEEM------PYKPDARMIQSLVAS 718

Query: 182 C 182
           C
Sbjct: 719 C 719



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           N S  S+   +  L +NG   EAL L   M+  +LR+       ++  C     L  G+Q
Sbjct: 24  NPSSTSYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRTGQQ 83

Query: 458 VFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
           + AR+   G     ++ I T LV FY KC  +++ E
Sbjct: 84  IHARILKNGDFYARNEYIETKLVIFYAKCDALEVAE 119


>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
          Length = 607

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 249/559 (44%), Gaps = 118/559 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C +   A +LF ++
Sbjct: 68  GEILQGCVYERDLCTGKQIHARILKNGDFYARNEYIETKLVIFYSKCDSFEVAEVLFSKL 127

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
             RN +SW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 128 RVRNVYSWAAIIGLKCRIGLCEGALMGFVEMFEDGIFPDNFVVPNVXKACGALQWSRFGR 187

Query: 111 --------SG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                   SG              + K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 188 GVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNG 247

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RLF ++  + +E  +     ++T + A A++  +E GKQ H+  +V+GL+ D++
Sbjct: 248 MNEEAIRLFFDMREEGIEPTR---VTVSTCLSASANMGGIEEGKQSHAIAIVHGLELDNI 304

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G                                +  A  +FDR  +  
Sbjct: 305 LGTSILNFYCKVG-------------------------------LIEYAEMIFDRMIEKD 333

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      +A+ +   MR   +  D  TLA+++SA +    L+ GK+V  
Sbjct: 334 VVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQC 393

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           +  +  +  D+++AS  +D Y+K G   DA K F  +   D IL NT++  Y+  G    
Sbjct: 394 YCIRHSLESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSGE 453

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++ +AK +F  M      PN  L+SW +M
Sbjct: 454 ALRLFYEMQLESVPPNVITWNLIILSFLGNGQVNEAKEMFLQMQSSGVFPN--LVSWTTM 511

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA+     M +  LR +  S+   +SACA+++SL LG  +   +     
Sbjct: 512 MNGLVQNGCSEEAILFLRKMQESGLRPNAISITVALSACAHLASLHLGRSIHGYIIRNQH 571

Query: 468 DSDQI-ISTSLVDFYCKCG 485
            S  + I TSLVD Y KCG
Sbjct: 572 HSSSVSIETSLVDMYAKCG 590



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 187/388 (48%), Gaps = 67/388 (17%)

Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
           +N++    L+  ++K    + A  LF+ +  RN  +W ++I    R G    A+  F E+
Sbjct: 99  RNEYIETKLVIFYSKCDSFEVAEVLFSKLRVRNVYSWAAIIGLKCRIGLCEGALMGFVEM 158

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
             D +     D F++  V  AC  L    +G+ +H +++ +G D    + SSL ++YGK 
Sbjct: 159 FEDGIFP---DNFVVPNVXKACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGK- 214

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                         CG ++DAR+VFD   + + V WN+++ GY+
Sbjct: 215 ------------------------------CGVLDDARKVFDEIPERNVVAWNALMVGYV 244

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            N  + EA+ LF  MR  G+     T+++ LSA +++G +E GKQ H  A   G+  D I
Sbjct: 245 QNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVHGLELDNI 304

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           + +++L+ Y K G+                               IE A+ IF  M  K 
Sbjct: 305 LGTSILNFYCKVGL-------------------------------IEYAEMIFDRMIEKD 333

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVF 459
           +++WN +I G  Q G   +A+ + C + +L+ L+ D  +LA+++SA A   +L+LG++V 
Sbjct: 334 VVTWNLLISGYVQQGLVEDAIHM-CQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQ 392

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                  L+SD +++++ +D Y KCG I
Sbjct: 393 CYCIRHSLESDIVLASTAIDMYAKCGSI 420



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 194/425 (45%), Gaps = 83/425 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  + ++C        G+ +H + +K G  +  + +A+ L  MY +CG   DA  +FDE+
Sbjct: 170 VPNVXKACGALQWSRFGRGVHGYVVKSG-XDDCVFVASSLADMYGKCGVLDDARKVFDEI 228

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------- 108
           P RN  +WNA++ G+++ G  E++++LF  M ++               S NM       
Sbjct: 229 PERNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGIEEGK 288

Query: 109 --------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               +++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G
Sbjct: 289 QSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISGYVQQG 348

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ + + +    +E L+ D   LAT++ A A    L+ GK++  + + + L+ D V
Sbjct: 349 LVEDAIHMCQLMR---LENLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSLESDIV 405

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG---------------- 252
           L S+ +++Y KCG    A +  + + E D    + L++ YA  G                
Sbjct: 406 LASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLES 465

Query: 253 -------------------KMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEAL 289
                              ++N+A+ +F +   +      V W +M++G + N    EA+
Sbjct: 466 VPPNVITWNLIILSFLGNGQVNEAKEMFLQMQSSGVFPNLVSWTTMMNGLVQNGCSEEAI 525

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDT 348
           L   KM+ +G+  +A ++   LSAC+ L  L  G+ +HG+  +       V + ++L+D 
Sbjct: 526 LFLRKMQESGLRPNAISITVALSACAHLASLHLGRSIHGYIIRNQHHSSSVSIETSLVDM 585

Query: 349 YSKRG 353
           Y+K G
Sbjct: 586 YAKCG 590



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 161/349 (46%), Gaps = 69/349 (19%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  REA+ L  E++      L+    I   ++  C     L  GKQIH+ IL NG DF
Sbjct: 41  KNGEIREALSLVTEMD---FRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG-DF 96

Query: 206 ---DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
              +  + + LV  Y KC  F  A  + + ++  + +  +A+I      G          
Sbjct: 97  YARNEYIETKLVIFYSKCDSFEVAEVLFSKLRVRNVYSWAAIIGLKCRIG---------- 146

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                       +  G         AL+ F +M  +G+  D   + +V  AC +L +   
Sbjct: 147 ------------LCEG---------ALMGFVEMFEDGIFPDNFVVPNVXKACGALQWSRF 185

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+ VHG+  K G  D V VAS+L D Y K                               
Sbjct: 186 GRGVHGYVVKSGXDDCVFVASSLADMYGK------------------------------- 214

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG ++DA+ +F  +P +++++WN+++VG  QNG   EA+ LF +M +  +   + ++++ 
Sbjct: 215 CGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTC 274

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +SA AN+  +E G+Q  A   + GL+ D I+ TS+++FYCK G I+  E
Sbjct: 275 LSASANMGGIEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAE 323



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 124/266 (46%), Gaps = 44/266 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +     ++ +GK++  + ++   L S + +A+  + MY +CG+  DA   FD +
Sbjct: 372 LATLMSAAARTQNLKLGKEVQCYCIRHS-LESDIVLASTAIDMYAKCGSIVDARKAFDSI 430

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + + G   ++L+LF  M       N  +WN++I  F   G++  A+
Sbjct: 431 VEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLESVPPNVITWNLIILSFLGNGQVNEAK 490

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       N ++W +M++  V+NG + EA+   +++       L+ +A  +   +
Sbjct: 491 EMFLQMQSSGVFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQES---GLRPNAISITVAL 547

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            ACA LA+L  G+ IH +I+ N     SV + +SLV++Y K                   
Sbjct: 548 SACAHLASLHLGRSIHGYIIRNQHHSSSVSIETSLVDMYAK------------------- 588

Query: 239 FCLSALISGYANCGKMNDARRVFDRT 264
                       CG +N A  +F  T
Sbjct: 589 ------------CGDLNKAEMIFGST 602



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           KH      + S  S+   +  L +NG   EAL L   M+  +LR+       ++  C   
Sbjct: 18  KHHDDQAHSPSSTSYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIYGEILQGCVYE 77

Query: 450 SSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
             L  G+Q+ AR+   G     ++ I T LV FY KC   ++ E
Sbjct: 78  RDLCTGKQIHARILKNGDFYARNEYIETKLVIFYSKCDSFEVAE 121


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 213/451 (47%), Gaps = 50/451 (11%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G L   +  +N+ +  +MR G   DA  LF  MPRR+  ++NAM+ G+   G    +  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F  +P+ +++S+N L+   A +  L  AR LF++MP R+++ +N MI  +  +G    A 
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
             F                          DLA                 + D+V  + ++
Sbjct: 152 HYF--------------------------DLAP----------------EKDAVSWNGML 169

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
             Y + G    A  + N   E D    +AL+SGY   GKM++AR +FDR      V WN 
Sbjct: 170 AAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNI 229

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           M+SGY    +  EA  LF        + D  T  +V+S  +  G LE  ++V     +  
Sbjct: 230 MVSGYARRGDMVEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE-- 283

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
              + +  +A++  Y +R M  +A +LF+ +   +    NTM+T Y+  G +E+AK +F 
Sbjct: 284 --RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
           TMP K  +SW +M+   SQ G   E L LF  M +    +++ + A V+S CA+I++LE 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G Q+  R+   G      +  +L+  Y KCG
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 182/396 (45%), Gaps = 42/396 (10%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FD  P ++  SWN M+  +++ G  E++  LFN   + +  SWN L+SG+ + G++  AR
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEAR 213

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF+ MP R+ ++WN M+  Y R G   EA RLF             D F    V+   A
Sbjct: 214 ELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-------DVFTWTAVVSGYA 266

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
               LE  +++   +     + ++V  +++V  Y +    + A ++ NMM   +    + 
Sbjct: 267 QNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +++GYA  G + +A+ VFD      +V W +M++ Y       E L LF +M R G   +
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            S  A VLS C+ +  LE G Q+HG   + G      V +ALL  Y K G   DA   F 
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFE 442

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           E++  D +  NTMI  Y        A+H F                         EAL++
Sbjct: 443 EMEERDVVSWNTMIAGY--------ARHGFGK-----------------------EALEI 471

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F  M     + D  +L  V++AC++   +E G   F
Sbjct: 472 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 144/277 (51%), Gaps = 42/277 (15%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           Y + G   +A  +FD MP RN  SWNAM+  +++    +++ +LFN+MP +N  SWN ++
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +G+A+AG L+ A+ +F+ MP+++A++W +M+  Y + G + E ++LF E+        +C
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG-------RC 377

Query: 171 DAFI----LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             ++     A V+  CAD+AALE G Q+H  ++  G      +G++L+ +Y KCG+   A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                 M+E D    + +I+GYA  G        F +                       
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHG--------FGK----------------------- 466

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
           EAL +F  MR      D  TL  VL+ACS  G +E G
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 17/234 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   ++ G       + N LL MY +CGN  DA   F+EM  R
Sbjct: 389 VLSTCADIAALECGMQLHGRLIRAGYGVGCF-VGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN MI G+ + G  +++L++F++M     + +D +   +++  + +G ++   + F
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M     +      +  MI    R G   EA  L K++        + D+ +   ++GA
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP------FEPDSTMWGALLGA 561

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                  E G+     I     + ++ +   L N+Y   G +  A ++  MM+E
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMMEE 614


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 230/475 (48%), Gaps = 66/475 (13%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C++   I +  QLH    K G  N+ + I N ++ MY++C    DA+   +        
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKV-IQNSIIDMYIKC----DAIYAAE-------- 48

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
                              Q+F  + + + FSWN +I G++K  E+  A   F  MP R+
Sbjct: 49  -------------------QVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERD 89

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
           +++WN++I  +  +G   +++  F E+    ++  Q ++   A+V+ ACA++   ++GK 
Sbjct: 90  SVSWNTIISAFSHHGLHIQSLGTFVEM---WIQGCQPNSMTYASVLSACANIYDFQWGKH 146

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +H+ I+      D ++G+ LV++Y K                               CG 
Sbjct: 147 LHARIVRVEPFLDVLVGNGLVDMYAK-------------------------------CGL 175

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           ++ ++RVF+   + + V W S+ISG        E   +F++MR++ V+ D   LA++L  
Sbjct: 176 IDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGV 235

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C     +  G+Q+HG   K G+   V V +A L  Y+K G    A   F  +  +D I  
Sbjct: 236 CEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISW 295

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
            TMIT +S  G +E A+  F  MP +++ISWN+M+    QN    E L L+  M + ++R
Sbjct: 296 TTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVR 355

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            D  +  ++I AC+ ++  +LG Q+ ++   +GL SD  +  S +  Y +CG I+
Sbjct: 356 PDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIE 410



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 176/430 (40%), Gaps = 102/430 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L  C    +I +G+QLH   +K G +NS++P+ N  L MY +CG+   A L F+ M
Sbjct: 229 LATILGVCEGETNISIGEQLHGFTVKTG-MNSSVPVGNATLSMYAKCGDFEKASLAFETM 287

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              +  SW  MI  F   G+ E++   FN MP++N  SW                     
Sbjct: 288 AAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISW--------------------- 326

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     N+M+  Y +N F  E ++L+  +   L + ++ D     T+IGAC++LA 
Sbjct: 327 ----------NAMLGAYCQNSFWEEGLKLYILM---LRQEVRPDWITFVTMIGACSELAI 373

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            + G QI S  +  GL  D  + +S + LY +CG    A  + + ++E +      LIS 
Sbjct: 374 SKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKN------LIS- 426

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                                   WNS++ GY  N E  + + +F  M   G   D  T 
Sbjct: 427 ------------------------WNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITY 462

Query: 308 ASVLSACSSLGFLEHGK-----------------------QVHGHACKVGVIDDVIVASA 344
            ++LS CS  G ++  K                        + G A  + +  D+I    
Sbjct: 463 IAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMP 522

Query: 345 LLDTYSKRGMPSDACKL-----FSELKVYDTILLNT--------MITVYSSCGRIEDAKH 391
                S  G    AC++      +EL + + + LNT        +   YSS GR+E    
Sbjct: 523 FKPNASIWGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSE 582

Query: 392 IFRTMPNKSL 401
           + + M  K +
Sbjct: 583 VRQVMKEKRV 592


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 213/451 (47%), Gaps = 50/451 (11%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G L   +  +N+ +  +MR G   DA  LF  MPRR+  ++NAM+ G+   G    +  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F  +P+ +++S+N L+   A +  L  AR LF++MP R+++ +N MI  +  +G    A 
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
             F                          DLA                 + D+V  + ++
Sbjct: 152 HYF--------------------------DLAP----------------EKDAVSWNGML 169

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
             Y + G    A  + N   E D    +AL+SGY   GKM++AR +FDR      V WN 
Sbjct: 170 AAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNI 229

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           M+SGY    +  EA  LF        + D  T  +V+S  +  G LE  ++V     +  
Sbjct: 230 MVSGYARRGDMVEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE-- 283

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
              + +  +A++  Y +R M  +A +LF+ +   +    NTM+T Y+  G +E+AK +F 
Sbjct: 284 --RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
           TMP K  +SW +M+   SQ G   E L LF  M +    +++ + A V+S CA+I++LE 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G Q+  R+   G      +  +L+  Y KCG
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 182/396 (45%), Gaps = 42/396 (10%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FD  P ++  SWN M+  +++ G  E++  LFN   + +  SWN L+SG+ + G++  AR
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF+ MP R+ ++WN M+  Y R G   EA RLF             D F    V+   A
Sbjct: 214 ELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-------DVFTWTAVVSGYA 266

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
               LE  +++   +     + ++V  +++V  Y +    + A ++ NMM   +    + 
Sbjct: 267 QNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +++GYA  G + +A+ VFD      +V W +M++ Y       E L LF +M R G   +
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            S  A VLS C+ +  LE G Q+HG   + G      V +ALL  Y K G   DA   F 
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFE 442

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           E++  D +  NTMI  Y        A+H F                         EAL++
Sbjct: 443 EMEERDVVSWNTMIAGY--------ARHGFGK-----------------------EALEI 471

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F  M     + D  +L  V++AC++   +E G   F
Sbjct: 472 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 144/277 (51%), Gaps = 42/277 (15%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           Y + G   +A  +FD MP RN  SWNAM+  +++    +++ +LFN+MP +N  SWN ++
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +G+A+AG L+ A+ +F+ MP+++A++W +M+  Y + G + E ++LF E+        +C
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG-------RC 377

Query: 171 DAFI----LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             ++     A V+  CAD+AALE G Q+H  ++  G      +G++L+ +Y KCG+   A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                 M+E D    + +I+GYA  G        F +                       
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHG--------FGK----------------------- 466

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
           EAL +F  MR      D  TL  VL+ACS  G +E G
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 17/234 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   ++ G       + N LL MY +CGN  DA   F+EM  R
Sbjct: 389 VLSTCADIAALECGMQLHGRLIRAGYGVGCF-VGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN MI G+ + G  +++L++F++M     + +D +   +++  + +G ++   + F
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M     +      +  MI    R G   EA  L K++        + D+ +   ++GA
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP------FEPDSTMWGALLGA 561

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                  E G+     I     + ++ +   L N+Y   G +  A ++  MM+E
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMMEE 614


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 226/475 (47%), Gaps = 51/475 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L    R G   DA  LFDE+PRRN  SWNAMI      G    +  LF+ MP ++ F
Sbjct: 46  NAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPARDGF 105

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIA-WNSMIHCYVRNGFAREAVRLFKELNSD 163
           SW +++S +A+AGEL  AR   + MP     A +N+MI  Y ++G   +AV L +E+ + 
Sbjct: 106 SWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAP 165

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            +        +L  +      + A+++  ++ +         D V  + ++  Y + GD 
Sbjct: 166 DIISWNS---VLVGLTRNGEMVRAVKFFDEMPAR--------DMVSWNLMLEGYVRAGDV 214

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           +SA  +   +  P+      L++GY   G++ +AR +FDR  D +   WN M+SGY+  +
Sbjct: 215 DSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLS 274

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EA  LF +M      +++ +  +++SA    G L+  K +          D     +
Sbjct: 275 HMEEAYKLFTEMPD----KNSISWTTMISALVRGGKLQEAKDLLDKM----PFDSFAAKT 326

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+  Y +  M  DA  +F  L+V D +  NTMI+ Y  CG +++A  +F+ MPNK ++S
Sbjct: 327 ALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVS 386

Query: 404 WNSMIV-------------------------------GLSQNGSPIEALDLFCNMNKLDL 432
           WN+MI                                G  QNG  +EAL  F  M +   
Sbjct: 387 WNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAK 446

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           R D  + A  +SACA++++L +G Q  + +   G   D     +L+  Y KCG I
Sbjct: 447 RADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRI 501



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 202/414 (48%), Gaps = 34/414 (8%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L    R G    A+  FDEMP R+  SWN M+EG+++ G  + +  LF  +P  N  
Sbjct: 171 NSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVV 230

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN--- 161
           SW  L++G+ +AG +  AR LF+ +P RN  AWN M+  Y+R     EA +LF E+    
Sbjct: 231 SWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKN 290

Query: 162 --------------------SDLVERLQCDAFILATVIGACADLAALEYGKQIH-SHILV 200
                                DL++++  D+F   T +     +      K I  + ++ 
Sbjct: 291 SISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTAL-----MHGYLQSKMIDDARLIF 345

Query: 201 NGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
           +GL+  D+V  +++++ Y  CG  + A  +   M   D    + +I+GYA+ G+M  A  
Sbjct: 346 DGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVG 405

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F +    ++V WNS+ISG++ N    EAL  F  MRR+    D ST A  LSAC+ L  
Sbjct: 406 IFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAA 465

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G+Q H    + G I D    +AL+  Y+K G   +A ++F E+   D +  N +I  
Sbjct: 466 LHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDG 525

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL----SQNGSPIEALDLFCNMNK 429
           Y+S G   +A  +FR M +  +       VG+    S  G   E  D F +M K
Sbjct: 526 YASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTK 579



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 66/277 (23%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H G       L + + N  +   N ++  Y   G    A+ +F +M +RN  SWN++I 
Sbjct: 364 VHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVIS 423

Query: 81  GFMKLGHKEKSLQLFNVMPQK--------------------------------------- 101
           GF++ G   ++LQ F +M +                                        
Sbjct: 424 GFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIG 483

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           + F+ N LIS +AK G +  AR +F++MP  + ++WN++I  Y  NG   EA+ +F+E+ 
Sbjct: 484 DSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREME 543

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF------DSVLG----- 210
            + V   + D      V+ AC+           H+ ++  G DF      D  L      
Sbjct: 544 DNDV---RPDEVTFVGVLSACS-----------HAGLIDEGFDFFNSMTKDYALRPVAEH 589

Query: 211 -SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 245
            + +V+L G+ G  + A +++  M+ +P+     A++
Sbjct: 590 YACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAML 626



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 31/240 (12%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++HVG+Q H    + G +  +    N L+  Y +CG   +A  +FDEMP  +
Sbjct: 457 LSACADLAALHVGRQFHSLLARSGYIGDSFA-GNALISAYAKCGRILEARQVFDEMPAPD 515

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWNA+I+G+   GH  +++ +F  M     + ++ ++  ++S  + AG +      FN
Sbjct: 516 IVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFN 575

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +  A+      +  M+    R+G   EA  + + +      ++Q +A +   ++GAC
Sbjct: 576 SMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGM------QVQPNAGVWGAMLGAC 629

Query: 183 A-----DLAALEYGK--QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 +LA L   K  ++  H   N      VL   L N+  + G ++ A  +   +KE
Sbjct: 630 RVHKNHELAQLAAEKLYELEPHKTSN-----YVL---LSNITAEAGKWDEAQNMRVFIKE 681


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 240/490 (48%), Gaps = 79/490 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMP 68
           LL+SC +   +   KQ+  H    G L       N+L+   M    G+   A  +F+ + 
Sbjct: 14  LLKSCKSMSQL---KQIQAHIFCVG-LQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIH 69

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR- 123
             + F +N MI+ F+K G    ++ LF  + +     +++++  ++ G    GE++    
Sbjct: 70  DPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEK 129

Query: 124 ----------------------------------TLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                              +F +MP R+A++WN MI  YVR   
Sbjct: 130 VHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKR 189

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EAV +++ + ++  E+   +A +++T + ACA L  LE GK+IH +I  + LD  +++
Sbjct: 190 FEEAVDVYRRMWTESNEKPN-EATVVST-LSACAVLRNLELGKEIHDYI-ASELDLTTIM 246

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++L+++Y KCG  + A ++ + M   +  C +++++GY  CG+++ AR +F+R+     
Sbjct: 247 GNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDI 306

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V+W +MI+GY+  N   E + LF +M+  GV  D   + ++L+ C+  G LE GK +H +
Sbjct: 307 VLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNY 366

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             +  +  D +V +AL++ Y+K                               CG IE +
Sbjct: 367 IDENRIKVDAVVGTALIEMYAK-------------------------------CGCIEKS 395

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             IF  +  K   SW S+I GL+ NG P EAL+LF  M    L+ D  +  +V+SAC++ 
Sbjct: 396 FEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHA 455

Query: 450 SSLELGEQVF 459
             +E G ++F
Sbjct: 456 GLVEEGRKLF 465



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 183/373 (49%), Gaps = 36/373 (9%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G+   A  +FN +   +   +N MI  +V++G  R A+ LF++L    V     D +   
Sbjct: 56  GDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGV---WPDNYTYP 112

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            V+     +  +  G+++H+ ++  GL+FD  + +S +++Y + G      QV   M + 
Sbjct: 113 YVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDR 172

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D    + +ISGY  C +  +A  V+ R       MW        SN +  EA        
Sbjct: 173 DAVSWNIMISGYVRCKRFEEAVDVYRR-------MWTE------SNEKPNEA-------- 211

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMP 355
                    T+ S LSAC+ L  LE GK++H + A ++ +    I+ +ALLD Y K G  
Sbjct: 212 ---------TVVSTLSACAVLRNLELGKEIHDYIASELDLT--TIMGNALLDMYCKCGHV 260

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           S A ++F  + V +     +M+T Y  CG+++ A+++F   P++ ++ W +MI G  Q  
Sbjct: 261 SVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFN 320

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              E + LF  M    ++ DKF + ++++ CA   +LE G+ +   +    +  D ++ T
Sbjct: 321 RFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGT 380

Query: 476 SLVDFYCKCGFIK 488
           +L++ Y KCG I+
Sbjct: 381 ALIEMYAKCGCIE 393



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 162/362 (44%), Gaps = 73/362 (20%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA+++ + K GH   + ++F+ M  KN   W  +++G+   G+L  AR LF   P R+ +
Sbjct: 248 NALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIV 307

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W +MI+ YV+     E + LF E+    +  ++ D FI+ T++  CA   ALE GK IH
Sbjct: 308 LWTAMINGYVQFNRFEETIALFGEMQ---IRGVKPDKFIVVTLLTGCAQSGALEQGKWIH 364

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++I  N +  D+V+G++L+ +Y K                               CG + 
Sbjct: 365 NYIDENRIKVDAVVGTALIEMYAK-------------------------------CGCIE 393

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            +  +F+   +  +  W S+I G   N + +EAL LF  M+  G+  D  T  +VLSACS
Sbjct: 394 KSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACS 453

Query: 316 SLGFLEHGKQV--------------HGHACKVGVI--------------------DDVIV 341
             G +E G+++                + C + ++                    +++IV
Sbjct: 454 HAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIV 513

Query: 342 A--SALLD---TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
               ALL    TY    M        +++K  D+ L   + ++Y+S  R ED + +   M
Sbjct: 514 PLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKM 573

Query: 397 PN 398
            +
Sbjct: 574 KD 575



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 139/322 (43%), Gaps = 60/322 (18%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           +QC   +  T I       ++   KQI +HI   GL  D                 ++ N
Sbjct: 1   MQCSKLMKGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDR----------------DTLN 44

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           +++    +             ++ G  N A R+F+   D S  ++N MI  ++ +     
Sbjct: 45  KLMAFSMD-------------SSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRS 91

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+ LF ++R +GV  D  T   VL     +G +  G++VH    K G+  D  V ++ +D
Sbjct: 92  AISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMD 151

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y++ G+     ++F E+   D +  N MI+ Y  C R E+A  ++R M  +S       
Sbjct: 152 MYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTES------- 204

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
                 N  P EA                 ++ S +SACA + +LELG+++   +    L
Sbjct: 205 ------NEKPNEA-----------------TVVSTLSACAVLRNLELGKEIHDYIA-SEL 240

Query: 468 DSDQIISTSLVDFYCKCGFIKM 489
           D   I+  +L+D YCKCG + +
Sbjct: 241 DLTTIMGNALLDMYCKCGHVSV 262


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 213/451 (47%), Gaps = 50/451 (11%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           G L   +  +N+ +  +MR G   DA  LF  MPRR+  ++NAM+ G+   G    +  L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F  +P+ +++S+N L+   A +  L  AR LF++MP R+++ +N MI  +  +G    A 
Sbjct: 92  FRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLAR 151

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
             F                          DLA                 + D+V  + ++
Sbjct: 152 HYF--------------------------DLAP----------------EKDAVSWNGML 169

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
             Y + G    A  + N   E D    +AL+SGY   GKM++AR +FDR      V WN 
Sbjct: 170 AAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNI 229

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           M+SGY    +  EA  LF        + D  T  +V+S  +  G LE  ++V     +  
Sbjct: 230 MVSGYARRGDMVEARRLFDA----APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE-- 283

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
              + +  +A++  Y +R M  +A +LF+ +   +    NTM+T Y+  G +E+AK +F 
Sbjct: 284 --RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
           TMP K  +SW +M+   SQ G   E L LF  M +    +++ + A V+S CA+I++LE 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G Q+  R+   G      +  +L+  Y KCG
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 182/396 (45%), Gaps = 42/396 (10%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FD  P ++  SWN M+  +++ G  E++  LFN   + +  SWN L+SG+ + G++  AR
Sbjct: 154 FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAR 213

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF+ MP R+ ++WN M+  Y R G   EA RLF             D F    V+   A
Sbjct: 214 ELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-------DVFTWTAVVSGYA 266

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
               LE  +++   +     + ++V  +++V  Y +    + A ++ NMM   +    + 
Sbjct: 267 QNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +++GYA  G + +A+ VFD      +V W +M++ Y       E L LF +M R G   +
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            S  A VLS C+ +  LE G Q+HG   + G      V +ALL  Y K G   DA   F 
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFE 442

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           E++  D +  NTMI  Y        A+H F                         EAL++
Sbjct: 443 EMEERDVVSWNTMIAGY--------ARHGFGK-----------------------EALEI 471

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F  M     + D  +L  V++AC++   +E G   F
Sbjct: 472 FDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 144/277 (51%), Gaps = 42/277 (15%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           Y + G   +A  +FD MP RN  SWNAM+  +++    +++ +LFN+MP +N  SWN ++
Sbjct: 265 YAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTML 324

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +G+A+AG L+ A+ +F+ MP+++A++W +M+  Y + G + E ++LF E+        +C
Sbjct: 325 TGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG-------RC 377

Query: 171 DAFI----LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             ++     A V+  CAD+AALE G Q+H  ++  G      +G++L+ +Y KCG+   A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                 M+E D    + +I+GYA  G        F +                       
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHG--------FGK----------------------- 466

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
           EAL +F  MR      D  TL  VL+ACS  G +E G
Sbjct: 467 EALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKG 503



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 17/234 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   ++ G       + N LL MY +CGN  DA   F+EM  R
Sbjct: 389 VLSTCADIAALECGMQLHGRLIRAGYGVGCF-VGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN MI G+ + G  +++L++F++M     + +D +   +++  + +G ++   + F
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M     +      +  MI    R G   EA  L K++        + D+ +   ++GA
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP------FEPDSTMWGALLGA 561

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                  E G+     I     + ++ +   L N+Y   G +  A ++  MM+E
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDARKMRVMMEE 614


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/519 (26%), Positives = 234/519 (45%), Gaps = 115/519 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++  +++ GK +H   +  G+   T  + N ++ +Y +CG   +A  +F+ +P R
Sbjct: 133 VLTACSSAGALNEGKAIHDCAVLAGM--ETQVVGNAIVNLYGKCGRVHEAKAVFERLPER 190

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKND---------------------- 103
           N  SWNA+I    + GH + ++Q+F++M      + ND                      
Sbjct: 191 NLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKST 250

Query: 104 -------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                        F  N L++ + K G +  AR +F  M  RN ++W  MI  Y + GF 
Sbjct: 251 HERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFI 310

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           R A  L+K ++ +       +A     V+ +C     L   +QIH+H++ +G D D+VL 
Sbjct: 311 RAAFDLYKRMDCEP------NAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQ 364

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS-- 268
             LV +YGKC                               G ++ A  +F+   + S  
Sbjct: 365 VCLVTMYGKC-------------------------------GSVDSAWSIFENLKERSNN 393

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN+MISG   + E  +AL  F KM   GV  ++ T  + L ACSSL  L  G+Q+H 
Sbjct: 394 AVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLH- 452

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                        A  LL+                   +++  L N +I +Y  CG +++
Sbjct: 453 -------------ARILLEN------------------IHEANLSNAVINMYGKCGSLDE 481

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  MP + ++SWN+MI   +Q+GS  +AL+ F  M+      D+ +    I AC +
Sbjct: 482 AMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACGS 541

Query: 449 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCG 485
           + SL LG+ + + V      L+ D  ++T+LV  Y +CG
Sbjct: 542 VPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCG 580



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 139/529 (26%), Positives = 226/529 (42%), Gaps = 111/529 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LLQ C    S   GK +H H L  G       I N L+ MY +CG   DAL +F+ +P
Sbjct: 30  ASLLQKCTEQKSAAAGKLVHQHILSSGC-GVNRYIQNHLIFMYAKCGCLEDALEVFELLP 88

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS----------------- 105
             N FSW A+I  + K GH  + L LF  M      P    FS                 
Sbjct: 89  NPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKA 148

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N +++ + K G +  A+ +F  +P RN ++WN++I    +NG  
Sbjct: 149 IHDCAVLAGMETQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHC 208

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           ++A+++F  ++ D   R     F+  +V+ AC++L  L  GK  H  I+  G D    +G
Sbjct: 209 KDAMQVFHLMDLDGSVRPNDATFV--SVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVG 266

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SLVN+YGKCG                                ++ AR VF++ +  + V
Sbjct: 267 NSLVNMYGKCG-------------------------------SVDRARLVFEKMSSRNVV 295

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W  MI  Y        A  L+ +M       +A T  +V+ +C     L   +Q+H H 
Sbjct: 296 SWTVMIWAYAQQGFIRAAFDLYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHM 352

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G   D ++   L+  Y K                               CG ++ A 
Sbjct: 353 VASGFDSDAVLQVCLVTMYGK-------------------------------CGSVDSAW 381

Query: 391 HIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            IF  +  +S   ++WN+MI GL+Q+G   +AL+ F  M    +R +  +  + + AC++
Sbjct: 382 SIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSS 441

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI--KMDEYYLM 495
           ++ L  G Q+ AR+ +  +  +  +S ++++ Y KCG +   MDE+  M
Sbjct: 442 LNDLTRGRQLHARILLENIH-EANLSNAVINMYGKCGSLDEAMDEFAKM 489



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 155/353 (43%), Gaps = 73/353 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ SC     +   +Q+H H +  G  +S   +   L+ MY +CG+   A  +F+ +  R
Sbjct: 332 VMDSCLRPEDLPRAEQIHAHMVASG-FDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKER 390

Query: 71  --NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK-------------NDFSW--- 106
             N  +WNAMI G  + G  +++L+ F       V P               ND +    
Sbjct: 391 SNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQ 450

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N +I+ + K G L  A   F  MP R+ ++WN+MI  Y ++G  
Sbjct: 451 LHARILLENIHEANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSG 510

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           R+A+  FK+++   +E    D       I AC  + +L  GK IHS              
Sbjct: 511 RQALEFFKQMD---LEGWTTDRATYLGAIDACGSVPSLALGKTIHS-------------- 553

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
             +V     C              E D    +AL++ YA CG ++DA+ VF R+   + V
Sbjct: 554 --IVATAAPC-------------LEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLV 598

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            W+++I+    +  + EAL LF +M+  G   DA T +++++ACS  G ++ G
Sbjct: 599 TWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDG 651


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/520 (27%), Positives = 238/520 (45%), Gaps = 106/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  LQ C        GK LH   LK+G     L   N LL MY++     DA  LFDEMP
Sbjct: 42  ANALQDCIQKDEPSRGKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMP 100

Query: 69  RRNCFSWNAMIEG-------------FMKLGHKEKSLQ---------------------- 93
            RN  S+  +I+G             F++L  +   L                       
Sbjct: 101 ERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWG 160

Query: 94  ----LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
               +F +  + N F    LI  ++  G +  AR +F+ +  ++ ++W  M+ C+  N  
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            +EA++LF ++    +   + + F  A+V  AC  L A + GK +H   L +  + D  +
Sbjct: 221 FKEALKLFSQMR---MVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYV 277

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G +L++LY K GD                               ++DAR  F+       
Sbjct: 278 GVALLDLYTKSGD-------------------------------IDDARXAFEEIPKKDV 306

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W+ MI+ Y  +++  EA+ +F +MR+  VL +  T ASVL AC+++  L  G Q+H H
Sbjct: 307 IPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCH 366

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K+G+  DV V++AL+D Y+K                               CGR+E++
Sbjct: 367 VIKIGLHSDVFVSNALMDVYAK-------------------------------CGRMENS 395

Query: 390 KHIFRTMPNKSLIS-WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
             +F   P+++ ++ WN++IVG  Q G   +AL LF NM +  ++  + + +S + ACA+
Sbjct: 396 MXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 455

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +++LE G Q+ +       D D +++ +L+D Y KCG IK
Sbjct: 456 LAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIK 495



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 201/465 (43%), Gaps = 89/465 (19%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
           +   L+  Y  CG    A  +FD +  ++  SW  M+  F +    +++L+LF+ M    
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG 235

Query: 100 -QKNDFSWN-----------------------------------MLISGFAKAGELKTAR 123
            + N+F++                                     L+  + K+G++  AR
Sbjct: 236 FKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDAR 295

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
             F ++P+++ I W+ MI  Y ++  ++EAV +F ++   LV   Q   F  A+V+ ACA
Sbjct: 296 XAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQ---FTFASVLQACA 352

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            +  L  G QIH H++  GL                                 D F  +A
Sbjct: 353 TMEGLNLGNQIHCHVIKIGL-------------------------------HSDVFVSNA 381

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           L+  YA CG+M ++  +F  +   + V  WN++I G++   +  +AL LF  M    V  
Sbjct: 382 LMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQA 441

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
              T +S L AC+SL  LE G Q+H    K     D++V +AL+D Y+K G   DA  +F
Sbjct: 442 TEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVF 501

Query: 363 SELKVYDTILLNTMITVYS-------SCGRIEDAKHIFRTMPNKSLIS-----WNSMIVG 410
             +   D +  N MI+ YS       + G ++  +  F +M     I      +  M+  
Sbjct: 502 DLMNKQDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWL 561

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           L + G   +A+ L   ++++  +       +++ AC   + +ELG
Sbjct: 562 LGRGGHLDKAVKL---IDEIPFQPSVMVWRALLGACVIHNDIELG 603



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 41/183 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +LQ+C T   +++G Q+H H +K G L+S + ++N L+ +Y +CG   +++ LF E 
Sbjct: 344 FASVLQACATMEGLNLGNQIHCHVIKIG-LHSDVFVSNALMDVYAKCGRMENSMXLFAES 402

Query: 68  PRRN-CFSWNAMIEGFMKLGHKEKSLQLF-NVMP---QKNDFSW---------------- 106
           P RN    WN +I G ++LG  EK+L+LF N++    Q  + ++                
Sbjct: 403 PHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPG 462

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N LI  +AK G +K AR +F+ M +++ ++WN+MI  Y  +
Sbjct: 463 LQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMH 522

Query: 148 GFA 150
           G A
Sbjct: 523 GLA 525


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 228/481 (47%), Gaps = 74/481 (15%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           +T  S+   +Q H H LK G+ N T  +A +LL  Y       DA L+ D          
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDT-HLATKLLSHYANNMCFADATLVLD---------- 72

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
                                ++P+ N FS++ LI  F+K  +   A + F+ M      
Sbjct: 73  ---------------------LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQM------ 105

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
                                       L   L  D  +L + + ACA L+AL+  +Q+H
Sbjct: 106 ----------------------------LTRGLMPDNRVLPSAVKACAGLSALKPARQVH 137

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
               V+G D DS + SSLV++Y KC     A++V + M EPD    SAL++ YA  G ++
Sbjct: 138 GIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVD 197

Query: 256 DARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           +A+R+F    D+      + WN MI+G+  +   +EA+L+F  M   G   D +T++SVL
Sbjct: 198 EAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVL 257

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            A   L  L  G  +HG+  K G++ D  V+SAL+D Y K    S+  ++F ++   D  
Sbjct: 258 PAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVG 317

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNM 427
             N  I   S  G++E +  +FR + ++ +    +SW SMI   SQNG  IEAL+LF  M
Sbjct: 318 SCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM 377

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
               ++ +  ++  ++ AC NI++L  G+         G+ +D  + ++L+D Y KCG I
Sbjct: 378 QIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRI 437

Query: 488 K 488
           +
Sbjct: 438 Q 438



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 199/395 (50%), Gaps = 42/395 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP-- 130
           F  ++++  ++K      + ++F+ M + +  SW+ L++ +A+ G +  A+ LF++M   
Sbjct: 150 FVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDS 209

Query: 131 --RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
             + N I+WN MI  +  +G   EAV +F +++   +   + D   +++V+ A  DL  L
Sbjct: 210 GVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMH---LRGFEPDGTTISSVLPAVGDLEDL 266

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             G  IH +++  GL  D  + S+L+++YGKC   +  +QV + M   D    +A I G 
Sbjct: 267 VMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGL 326

Query: 249 ANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  G++  + R+F    D+  + + V W SMI+    N  D EAL LF +M+  GV  ++
Sbjct: 327 SRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNS 386

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  +L AC ++  L HGK  H  + + G+  DV V SAL+D Y+K             
Sbjct: 387 VTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAK------------- 433

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             CGRI+ ++  F  +P K+L+ WN++I G + +G   EA+++F
Sbjct: 434 ------------------CGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIF 475

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             M +   + D  S   V+SAC+     E G   F
Sbjct: 476 DLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 192/463 (41%), Gaps = 113/463 (24%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G  +H + +K+G+++    +++ L+ MY +C   ++   +FD+M   +  S NA I G 
Sbjct: 268 MGILIHGYVIKQGLVSDKC-VSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGL 326

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            + G  E SL+LF                           R L +     N ++W SMI 
Sbjct: 327 SRNGQVESSLRLF---------------------------RQLKDQGMELNVVSWTSMIA 359

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
           C  +NG   EA+ LF+E+    +  ++ ++  +  ++ AC ++AAL +GK  H   L  G
Sbjct: 360 CCSQNGRDIEALELFREMQ---IAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           +  D  +GS+L+++Y KCG   ++    + +   +  C +A+I+GYA  GK  +A  +FD
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                                           M+R+G   D  +   VLSACS  G  E 
Sbjct: 477 L-------------------------------MQRSGQKPDIISFTCVLSACSQSGLTEE 505

Query: 323 GK--------------QVHGHACKVGVIDDVIVASALLDTYSK-RGMP--SDAC---KLF 362
           G               +V  +AC V ++     A  L   Y+  R MP   DAC    L 
Sbjct: 506 GSYYFNSMSSKYGIEARVEHYACMVTLLSR---AGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 363 SELKVYDTILLNTMIT-------------------VYSSCGRIEDAKHIFRTMPNKSL-- 401
           S  +V++ + L  +                     +Y+S G   +   +   M NK L  
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 402 ---ISW----NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
               SW    N + + L+ + S  +   +   ++KL + M K 
Sbjct: 623 NPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKL 665



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 112/242 (46%), Gaps = 35/242 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++  GK  H   L++GI ++ + + + L+ MY +CG    + + FD +P +
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGI-STDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKND-FSWNMLISGFAKAGELKTARTLF 126
           N   WNA+I G+   G  ++++++F++M    QK D  S+  ++S  +++G  +     F
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M  +  I      +  M+    R G   +A  + + +       +  DA +   ++ +
Sbjct: 511 NSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP------VNPDACVWGALLSS 564

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSS---------LVNLYGKCGDFNSANQVLNM 232
           C          ++H+++ +  +  + +             L N+Y   G +N  N+V +M
Sbjct: 565 C----------RVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDM 614

Query: 233 MK 234
           MK
Sbjct: 615 MK 616


>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 232/455 (50%), Gaps = 51/455 (11%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G  LH + LK G  +    + N ++ +Y + G    A  LFDEMP R    WN +I G+ 
Sbjct: 118 GMLLHAYLLKLG-HSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYW 176

Query: 84  KLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           K G+++++ +LF +M   +KN  +W  +++G AK   L+TAR  F++MP R   +WN+M+
Sbjct: 177 KCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAML 236

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y ++G A+E VRLF ++ S   E    D     TV+ +C+ L     G    +  +V 
Sbjct: 237 SGYAQSGAAQETVRLFDDMLSSGNE---PDETTWVTVLSSCSSL-----GDPCLAESIVR 288

Query: 202 GLD---FDS--VLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMN 255
            LD   F S   + ++L++++ KCG+   A ++   +    +    +A+IS YA  G ++
Sbjct: 289 KLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLS 348

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSAC 314
            AR +F++  + ++V WNSMI+GY  N E  +A+ LF +M        D  T+ SV SAC
Sbjct: 349 LARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSAC 408

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-L 373
             LG L                                G+ + A  +  E  +  +I   
Sbjct: 409 GHLGRL--------------------------------GLGNWAVSILHENHIKLSISGY 436

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N++I +Y  CG +EDA+  F+ M  K L+S+N++I GL+ +G   E++ L   M +  + 
Sbjct: 437 NSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIG 496

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            D+ +   V++AC++   LE G +VF  + +  +D
Sbjct: 497 PDRITYIGVLTACSHAGLLEEGWKVFESIKVPDVD 531



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 146/330 (44%), Gaps = 69/330 (20%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-QKNDFSWNMLISGFAKAGELKTARTLFN 127
           R N F   A+++   K G+ E + ++F  +   KN  +WN +IS +A+ G+L  AR LFN
Sbjct: 296 RSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFN 355

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP RN ++WNSMI  Y +NG + +A++LFKE+ S   +  + D   + +V  AC  L  
Sbjct: 356 KMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISS--KDSKPDEVTMVSVFSACGHLGR 413

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G    S +  N +   S+ G            +NS                  LI  
Sbjct: 414 LGLGNWAVSILHENHIKL-SISG------------YNS------------------LIFM 442

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y  CG M DAR  F        V +N++ISG  ++   TE++ L  KM+ +G+  D  T 
Sbjct: 443 YLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIGPDRITY 502

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             VL+ACS  G LE G                                    K+F  +KV
Sbjct: 503 IGVLTACSHAGLLEEG-----------------------------------WKVFESIKV 527

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            D      MI +    G++E+A  + ++MP
Sbjct: 528 PDVDHYACMIDMLGRVGKLEEAVKLIQSMP 557



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 48/244 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND- 103
           N ++  Y R G+ + A  LF++MP RN  SWN+MI G+ + G   K++QLF  M    D 
Sbjct: 335 NAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDS 394

Query: 104 ----------FS-----------------------------WNMLISGFAKAGELKTART 124
                     FS                             +N LI  + + G ++ AR 
Sbjct: 395 KPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARI 454

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
            F +M  ++ +++N++I     +G   E+++L  ++  D    +  D      V+ AC+ 
Sbjct: 455 TFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKED---GIGPDRITYIGVLTACSH 511

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSA 243
              LE G ++   I V  +D  +     ++++ G+ G    A +++  M  EP      +
Sbjct: 512 AGLLEEGWKVFESIKVPDVDHYAC----MIDMLGRVGKLEEAVKLIQSMPMEPHAGIYGS 567

Query: 244 LISG 247
           L++ 
Sbjct: 568 LLNA 571



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 38/276 (13%)

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL-LFHKMRRNGVLEDASTLASVLSA 313
           N    +F   T  +  ++  M+  Y      T+ ++ LF  M+    ++  ++   VL  
Sbjct: 53  NYTSHIFRAATYPNVHVFTCMLKYYSQIGATTQVVVSLFKHMQYYNDIKPYTSFYPVLIK 112

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +     + G  +H +  K+G   D  V +A++  Y+K G    A KLF E+        
Sbjct: 113 SAG----KAGMLLHAYLLKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADW 168

Query: 374 NTMITVYSSCGR---------------------------------IEDAKHIFRTMPNKS 400
           N +I+ Y  CG                                  +E A+  F  MP + 
Sbjct: 169 NVIISGYWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERR 228

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           + SWN+M+ G +Q+G+  E + LF +M       D+ +  +V+S+C+++    L E +  
Sbjct: 229 VASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVR 288

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++  +   S+  + T+L+D + KCG +++ +    Q
Sbjct: 289 KLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQ 324


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 227/484 (46%), Gaps = 105/484 (21%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N +L+  ++ G+  +A  LFD+M +R+  SW  +I G++   +  ++L LF+ M      
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 99  -----------------------------PQKNDFS-----WNMLISGFAKAGELKTART 124
                                          K DF       + L+  + K G++     
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F +MP RN ++W ++I   VR G+ +EA+  F ++    ++++ CD +  ++ + ACAD
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDM---WIQKVGCDTYTFSSALKACAD 181

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
             AL YG++IH   L  G    S + ++L  +Y KC                        
Sbjct: 182 SGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKC------------------------ 217

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                  GK++   R+F+  T    V W ++I   +   ++  A+  F +MR   V  + 
Sbjct: 218 -------GKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNE 270

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T A+V+S C++LG +E G+Q+H H  + G++D + VA                      
Sbjct: 271 FTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVA---------------------- 308

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                    N+++ +YS C +++ A  +F+ +  + +ISW++MI G +Q G   EA D  
Sbjct: 309 ---------NSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYL 359

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M +   R ++F+ ASV+S C N++ LE G+Q+ A V  +GL+ + ++ ++L++ Y KC
Sbjct: 360 SWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKC 419

Query: 485 GFIK 488
           G IK
Sbjct: 420 GSIK 423



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 145/527 (27%), Positives = 232/527 (44%), Gaps = 112/527 (21%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD  I  LA  L++C  + S+  G+ LH + +K   +NS   + + L+ MYM+ G   + 
Sbjct: 66  MDPFILSLA--LKACGLNMSVSFGESLHGYSVKTDFVNSVF-VGSALVDMYMKIGKVDEG 122

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------ 102
            ++F EMP RN  SW A+I G ++ G+ +++L  F+ M  +                   
Sbjct: 123 CIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADS 182

Query: 103 ---------------------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                 F  N L + + K G+L     LF  M +R+ ++W ++I
Sbjct: 183 GALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTII 242

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              V+ G    AV+ F+ +    V     + F  A VI  CA L  +E+G+Q+H+H++  
Sbjct: 243 MSNVQIGQEENAVKAFRRMRETDVSP---NEFTFAAVISGCATLGRIEWGEQLHAHVIRR 299

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL     + +S++ +Y KC   + A+ V   +   D    S +ISGYA  G   +A   F
Sbjct: 300 GLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEA---F 356

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D                Y+S             MRR G   +    ASVLS C ++  LE
Sbjct: 357 D----------------YLS------------WMRREGPRPNEFAFASVLSVCGNMAILE 388

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GKQ+H H   VG+  + +V SAL++ YSK G   +A K+F E +  + +    MI  Y 
Sbjct: 389 QGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGY- 447

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                  A+H                  G SQ     EA+DLF  + K+ LR D  +  +
Sbjct: 448 -------AEH------------------GYSQ-----EAIDLFKKLPKVGLRPDSVTFIA 477

Query: 442 VISACANISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCKCG 485
           V++AC++   ++LG   F   ++V  I    D      ++D  C+ G
Sbjct: 478 VLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHY--GCMIDLLCRAG 522



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 157/342 (45%), Gaps = 52/342 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++  C T   I  G+QLH H +++G+++S L +AN ++ MY +C     A  +F  +
Sbjct: 273 FAAVISGCATLGRIEWGEQLHAHVIRRGLVDS-LSVANSIMAMYSKCWQLDLASTVFQGL 331

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW--------NM------- 108
            RR+  SW+ MI G+ + G  E++    + M    P+ N+F++        NM       
Sbjct: 332 SRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGK 391

Query: 109 --------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               LI+ ++K G +K A  +F++    N ++W +MI+ Y  +G
Sbjct: 392 QLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHG 451

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLDFDS 207
           +++EA+ LFK+L       L+ D+     V+ AC+    ++ G    +S   V+ +    
Sbjct: 452 YSQEAIDLFKKLPK---VGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSK 508

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL-----ISGYANCGKMNDARRVF 261
                +++L  + G  N A  ++  M  + DD   S L     I G  +CGK   A ++ 
Sbjct: 509 DHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGK-RAAEKIL 567

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            +     +V   ++ + Y +  +  EA  +   M+  GV+++
Sbjct: 568 -QLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKE 608


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 229/497 (46%), Gaps = 83/497 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFD 65
            RL+Q C  H    VGKQLH       +L+S +P   + ++L+  Y + G+  DA  +F 
Sbjct: 7   GRLIQHCTDHLFFRVGKQLHARL----VLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFG 62

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---------------------- 103
           ++PR+N FSWNA+   +         L+LF+ +   N                       
Sbjct: 63  KIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFS 122

Query: 104 ---------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                F  N LI+ +++  EL  AR +F+ MP R+ ++WN+M+ 
Sbjct: 123 NSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLA 182

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y + G   E   LF+ + S +   ++ +A    +V+ ACA    L +G ++H  +  + 
Sbjct: 183 GYSQGGSYEECKELFRVMLSSV--EVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQ 240

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           +  D  L ++++ LY KCG  + A ++   M E D     ++ISGY   G +N A  +F 
Sbjct: 241 IKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFR 300

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                    WN++ISG + NN    A+ +F  M+ +G   +  TLAS+L   S    L+ 
Sbjct: 301 EQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKG 360

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++HG+A +     ++ VA+A++D+Y+K                               
Sbjct: 361 GKEIHGYAIRNTYDRNIYVATAIIDSYAK------------------------------- 389

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG +  A+ +F  +  +SLI+W S+I   + +G    AL LF  M    ++ D+ +  SV
Sbjct: 390 CGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSV 449

Query: 443 ISACANISSLELGEQVF 459
           ++ACA+   L+   ++F
Sbjct: 450 LAACAHSGELDEAWKIF 466



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 201/409 (49%), Gaps = 36/409 (8%)

Query: 82  FMKLGHK-EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           F ++G +    L L +V+P  ++F  + LIS ++K+G ++ A  +F  +PR+N  +WN++
Sbjct: 18  FFRVGKQLHARLVLSSVVP--DNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNAL 75

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE-YGKQIHSHIL 199
              Y  +    + ++LF  L +     ++ D F +   + A A L +     K++HS IL
Sbjct: 76  FISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFIL 135

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             GL++D                                F ++ALI+ Y+ C ++  AR 
Sbjct: 136 RRGLEYDI-------------------------------FVVNALITFYSRCDELVLARI 164

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLG 318
           +FDR  +  +V WN+M++GY       E   LF  M  +  V  +A T  SVL AC+   
Sbjct: 165 MFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSN 224

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G +VH    +  +  DV + +A++  Y+K G+   A +LF E+   D I   +MI+
Sbjct: 225 DLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMIS 284

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
            Y   G +  A  +FR      L +WN++I GL QN     A+D+F  M     R +  +
Sbjct: 285 GYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVT 344

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           LAS++   ++ S+L+ G+++         D +  ++T+++D Y KCG++
Sbjct: 345 LASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYL 393



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 188/454 (41%), Gaps = 128/454 (28%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           + K++H   L++G L   + + N L+  Y RC     A ++FD MP R+  SWNAM+ G+
Sbjct: 126 LAKEVHSFILRRG-LEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGY 184

Query: 83  MKLGHKEKSLQLFNVM--------------------PQKNDFS----------------- 105
            + G  E+  +LF VM                     Q ND +                 
Sbjct: 185 SQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMD 244

Query: 106 ---WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
              WN +I  +AK G L  AR LF +MP ++ I + SMI  Y+ +GF  +A+ LF+E   
Sbjct: 245 VSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQER 304

Query: 163 -----------------------DLVERLQC-----DAFILATVIGACADLAALEYGKQI 194
                                  D+   +Q      +   LA+++   +  + L+ GK+I
Sbjct: 305 PRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEI 364

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H + + N  D +  + +++++ Y KCG  + A  V + +K       +++IS YA  G  
Sbjct: 365 HGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDA 424

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           N                                AL LF++M  NG+  D  T  SVL+AC
Sbjct: 425 N-------------------------------VALSLFYEMLTNGIQPDQVTFTSVLAAC 453

Query: 315 SSLGFL------------EHGKQ--VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           +  G L            E+G Q  V  +AC VGV+             S+ G  SDA +
Sbjct: 454 AHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVL-------------SRAGKLSDAVE 500

Query: 361 LFSELKVYDTI-LLNTMITVYSSCGRIEDAKHIF 393
             S++ +  T  +   ++   S  G +E  K++F
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVELGKYVF 534



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 132/325 (40%), Gaps = 76/325 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ+C   + +  G ++H  F+ +  +   + + N ++ +Y +CG    A  LF+EMP +
Sbjct: 216 VLQACAQSNDLTFGIEVH-RFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEK 274

Query: 71  NCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFNVMP 99
           +  +                               WNA+I G ++   +E ++ +F  M 
Sbjct: 275 DGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQ 334

Query: 100 Q----------------------------------KNDFSWNM-----LISGFAKAGELK 120
                                              +N +  N+     +I  +AK G L 
Sbjct: 335 SHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLH 394

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            A+ +F+ +  R+ IAW S+I  Y  +G A  A+ LF E+   L   +Q D     +V+ 
Sbjct: 395 GAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEM---LTNGIQPDQVTFTSVLA 451

Query: 181 ACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDD 238
           ACA    L+   +I + +L   G+       + +V +  + G  + A + ++ M  EP  
Sbjct: 452 ACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTA 511

Query: 239 FCLSALISGYANCGKMNDARRVFDR 263
               AL++G +  G +   + VFDR
Sbjct: 512 KVWGALLNGASVAGDVELGKYVFDR 536



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 35/184 (19%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S    ++  C+   F   GKQ+H       V+ D  + S L+  YSK G           
Sbjct: 4   SAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSG----------- 52

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                                I DA ++F  +P K++ SWN++ +  + +    + L LF
Sbjct: 53  --------------------SIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLF 92

Query: 425 ---CNMNKLDLRMDKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
               N N  D++ D+F++   + A A++ S+  L ++V + +   GL+ D  +  +L+ F
Sbjct: 93  SSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITF 152

Query: 481 YCKC 484
           Y +C
Sbjct: 153 YSRC 156



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 109/239 (45%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L   +   ++  GK++H + ++    +  + +A  ++  Y +CG    A L+FD++
Sbjct: 345 LASILPVFSHFSTLKGGKEIHGYAIRN-TYDRNIYVATAIIDSYAKCGYLHGAQLVFDQI 403

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             R+  +W ++I  +   G    +L LF  M     Q +  ++  +++  A +GEL  A 
Sbjct: 404 KGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAW 463

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +FN +     I      +  M+    R G   +AV    ++       L+  A +   +
Sbjct: 464 KIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMP------LEPTAKVWGAL 517

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV--NLYGKCGDFNSANQVLNMMKE 235
           +   +    +E GK +   +    ++ ++  G+ ++  NLY + G +  A+ + ++MKE
Sbjct: 518 LNGASVAGDVELGKYVFDRLF--EIEPENT-GNYVIMANLYSQSGRWKDADTIRDLMKE 573


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 233/509 (45%), Gaps = 109/509 (21%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  G+ LH H +K   L+S   +AN L++ Y +CG+   A L+F+ +  +N  S+N +I
Sbjct: 22  SLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLI 81

Query: 80  EGFMKLGHKEKS--LQLF------NVMPQKNDFSW------------------------- 106
            G    G K  +  L+LF      N++P  + F                           
Sbjct: 82  HGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKT 141

Query: 107 ---------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
                    + L++ + K G +  AR LF+ MP RN ++W +MI  Y     A+EA+ +F
Sbjct: 142 ASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVF 201

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNL 216
             +   LVE    + F+  +V+ A      ++ GKQ+H  ++ NG L+F SVL       
Sbjct: 202 GLMR--LVEG-NLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVL------- 251

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
                                    +AL++ YA CG +N +  +F+  +D +++ W+++I
Sbjct: 252 -------------------------NALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALI 286

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           +GY    +  +AL LF KM   G +    TL  VL ACS +  +E GKQ HG+  K G  
Sbjct: 287 TGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYE 346

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
             +  A+AL+D Y+K G   DA K F  L   D +L                        
Sbjct: 347 TQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVL------------------------ 382

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
                  W S+I G  QNG   EAL ++  M    +  ++ ++ASV+ AC+N+++LE G+
Sbjct: 383 -------WTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGK 435

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           Q+ AR    GL  +  I ++L   Y KCG
Sbjct: 436 QIHARTIKYGLGPELSIRSALSTMYAKCG 464



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 217/475 (45%), Gaps = 105/475 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            +Q+H+  +K   ++    + + L+  Y + G   +A  LFD MP RN  SW  MI G+ 
Sbjct: 131 ARQVHVLGIKTASIDDVF-VGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYA 189

Query: 84  KLGHKEKSLQLFNVM----PQKNDFSW--------------------------------- 106
                +++L +F +M       N+F +                                 
Sbjct: 190 SKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVS 249

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L++ +AK G L  +  LF     +NAI W+++I  Y + G + +A++LF +++   
Sbjct: 250 VLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMH--- 306

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                   F L  V+ AC+D+AA+E GKQ H ++L +G                      
Sbjct: 307 YAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGY--------------------- 345

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                     E   +  +AL+  YA  G   DAR+ FD   +   V+W S+I+GY+ N +
Sbjct: 346 ----------ETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGK 395

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           + EAL ++ +M+   +L +  T+ASVL ACS+L  LE GKQ+H    K G+  ++ + SA
Sbjct: 396 NEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSA 455

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L                                T+Y+ CG +E+   IFR M  + ++SW
Sbjct: 456 L-------------------------------STMYAKCGSLEEGVLIFRRMLQRDIVSW 484

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           N+MI GLSQNG   EAL+LF  M     + D  +  +V+SAC+++  ++ G   F
Sbjct: 485 NAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYF 539



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 170/383 (44%), Gaps = 68/383 (17%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE--AVRLFKELNSDL 164
           N LI  +AK G L  A+ +F ++  +N +++N +IH    NG       + LF+ +   +
Sbjct: 47  NNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRM---I 103

Query: 165 VERLQCDAFILATVIGACA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
              +  DA     V  A A +L      +Q+H   +      D  +GSSLVN Y K    
Sbjct: 104 ANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKV--- 160

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                       G + +AR++FDR  + + V W +MISGY S  
Sbjct: 161 ----------------------------GCVFEARKLFDRMPERNLVSWTTMISGYASKQ 192

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EAL +F  MR      +     SVLSA     F++ GKQVH    K GV++ V V  
Sbjct: 193 MAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSV-- 250

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
                                        LN ++T+Y+ CG +  +  +F    +K+ I+
Sbjct: 251 -----------------------------LNALVTMYAKCGNLNYSLMLFEMCSDKNAIT 281

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W+++I G SQ G   +AL LF  M+       +F+L  V+ AC++++++E G+Q    + 
Sbjct: 282 WSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLL 341

Query: 464 IIGLDSDQIISTSLVDFYCKCGF 486
             G ++    +T+LVD Y K GF
Sbjct: 342 KSGYETQIYTATALVDMYAKFGF 364



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 43/223 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C+   +I  GKQ H + LK G   + +  A  L+ MY + G   DA   FD +
Sbjct: 317 LVGVLKACSDVAAIEEGKQTHGYLLKSG-YETQIYTATALVDMYAKFGFTGDARKGFDFL 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG----------- 112
              +   W ++I G+++ G  E++L ++  M  +    N+ +   ++             
Sbjct: 376 LEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGK 435

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   +AK G L+    +F  M +R+ ++WN+MI    +NG
Sbjct: 436 QIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNG 495

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
             REA+ LF+E+    +E  + D     TV+ AC+ +  ++ G
Sbjct: 496 HGREALELFEEMR---LEGTKPDHITFVTVLSACSHMGIVKRG 535



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 109/240 (45%), Gaps = 25/240 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C+   ++  GKQ+H   +K G L   L I + L  MY +CG+  + +L+F  M
Sbjct: 418 MASVLKACSNLAALEQGKQIHARTIKYG-LGPELSIRSALSTMYAKCGSLEEGVLIFRRM 476

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
            +R+  SWNAMI G  + GH  ++L+LF  M     + +  ++  ++S  +  G +K   
Sbjct: 477 LQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGW 536

Query: 124 TLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             FN M       PR    A   M+    R G   EA      + S +++   C   IL 
Sbjct: 537 AYFNMMFDEFCLVPRVEHYA--CMVDVLSRAGKLNEAKEF---IESAIIDHGMCLWRIL- 590

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDS--VLGSSLVNLYGKCGDFNSANQVLNMMK 234
             + AC +    E G      ++  G    S  VL SS+    G+  D     +V  MMK
Sbjct: 591 --LPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLAD---VVRVRRMMK 645


>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
 gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
          Length = 630

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 8/377 (2%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I+   +AG+  +AR +F+ MPRR+A+AWN+M+  Y R G  R+A+ LF    +       
Sbjct: 18  IASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAPAP------ 71

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            DAF L   + A A L +   G Q+H+ +L  GL     +G+SL+++Y KC     A + 
Sbjct: 72  -DAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAEDAARA 130

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M+E +     +L+  Y     +  A+ +FD   + ++V WN+++ GY  +      L
Sbjct: 131 FGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCL 190

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
           LLF+KMR  G+  D +TL  ++ AC+ L     G  +H    + G      V+++L+  Y
Sbjct: 191 LLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLY 250

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +K  +  DA ++F  ++V   +  N++I  Y   G +E A  +F ++P  ++ISW +MI 
Sbjct: 251 TKFSLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIG 310

Query: 410 GLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           GL++NG   EAL LF  M   + +  D F+  +V+ ACA  +SL  G  V  RV   G  
Sbjct: 311 GLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQSGFV 370

Query: 469 SDQIISTSLVDFYCKCG 485
           S   ++ SL+D Y KCG
Sbjct: 371 SYLYVANSLIDMYAKCG 387



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 219/480 (45%), Gaps = 71/480 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFS------------------------------ 74
           N +L  Y R G P DAL LF   P  + FS                              
Sbjct: 46  NAMLTAYARAGQPRDALALFSRAPAPDAFSLTAALSAAAALRSPTAGAQLHARLLRVGLR 105

Query: 75  -----WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
                 N++I  + K    E + + F  M ++N  SW  L+  +  + +L+ A+ LF++M
Sbjct: 106 ALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEM 165

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           P RN +AWN+++  Y R+G A   + LF ++    +  L CD   L  ++ AC +LA   
Sbjct: 166 PNRNNVAWNTLLMGYSRSGNANHCLLLFNKMR---MAGLTCDDATLCILVDACTELANPS 222

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G  IH  ++ +G +  + + +SL++LY K    + A ++   M+       ++LI  Y 
Sbjct: 223 AGSAIHKIVVQSGWNAMAEVSNSLISLYTKFSLLDDAVRIFESMEVQTIVSWNSLIDAYM 282

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLA 308
             G +  A  +F    +T+ + W +MI G   N    EAL+LF +M     +  D  T  
Sbjct: 283 KLGCVEKATSLFGSVPETNVISWTAMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFG 342

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           +VL AC++   L  G+ VH                               C++F    V 
Sbjct: 343 AVLHACATAASLASGRMVH-------------------------------CRVFQSGFVS 371

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
              + N++I +Y+ CG +E   ++F T+ NK L+SWN+M+ G + NG P EAL ++ +M 
Sbjct: 372 YLYVANSLIDMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSMK 431

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIISTSLVDFYCKCGFI 487
             D+  D+ +   +++AC++   LE G+  F   V++ G+       + ++D Y + G I
Sbjct: 432 SHDVCPDEVTFTGLLTACSHSGLLEHGKTFFELMVSVHGIQPKPEHLSCILDMYARSGNI 491



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 159/365 (43%), Gaps = 81/365 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    +   G  +H   ++ G  N+   ++N L+ +Y +     DA+ +F+ M  +
Sbjct: 211 LVDACTELANPSAGSAIHKIVVQSG-WNAMAEVSNSLISLYTKFSLLDDAVRIFESMEVQ 269

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
              SWN++I+ +MKLG  EK+  LF  +P+ N  SW  +I G A                
Sbjct: 270 TIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLA---------------- 313

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                          RNG A EA+ LF E+ +   E +  D F    V+ ACA  A+L  
Sbjct: 314 ---------------RNGLADEALILFVEMLAH--EHIHPDDFTFGAVLHACATAASLAS 356

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H  +  +G      + +SL+++Y KCGD      V + +   D      L+S    
Sbjct: 357 GRMVHCRVFQSGFVSYLYVANSLIDMYAKCGDLEGGTNVFSTIVNKD------LVS---- 406

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                WN+M+ G+  N    EAL+++  M+ + V  D  T   +
Sbjct: 407 ---------------------WNTMLFGFAINGLPNEALVVYDSMKSHDVCPDEVTFTGL 445

Query: 311 LSACSSLGFLEHGK-------QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL-- 361
           L+ACS  G LEHGK        VHG   K   +      S +LD Y++ G  + A ++  
Sbjct: 446 LTACSHSGLLEHGKTFFELMVSVHGIQPKPEHL------SCILDMYARSGNITKAMEMLD 499

Query: 362 -FSEL 365
            +SE+
Sbjct: 500 RYSEM 504



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 35/276 (12%)

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           V  +S +   G+ GD  SA  V + M   D    +A+++ YA  G+  DA  +F R    
Sbjct: 12  VAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAP-- 69

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                                              DA +L + LSA ++L     G Q+H
Sbjct: 70  ---------------------------------APDAFSLTAALSAAAALRSPTAGAQLH 96

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
               +VG+   + V ++L+  Y+K     DA + F E++  + +   +++  Y +   + 
Sbjct: 97  ARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEMRERNALSWCSLLDAYVASDDLR 156

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  MPN++ ++WN++++G S++G+    L LF  M    L  D  +L  ++ AC 
Sbjct: 157 LAQELFDEMPNRNNVAWNTLLMGYSRSGNANHCLLLFNKMRMAGLTCDDATLCILVDACT 216

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
            +++   G  +   V   G ++   +S SL+  Y K
Sbjct: 217 ELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTK 252


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 230/483 (47%), Gaps = 103/483 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++ +GK +H H  +   L+  + + N LL MY++CG+  DA  +F E    
Sbjct: 111 VLKACGLVRNVELGKMVHYHIFQAK-LDVDIVLMNALLDMYVKCGSLRDAQRVFCE---- 165

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                      +P KN  SWN LI G+AK G +  A  LF+ MP
Sbjct: 166 ---------------------------IPCKNATSWNTLILGYAKQGLIDDAMKLFDKMP 198

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             + ++WNS+I   V N  +R A+R    ++    + L+ D F   +V+ AC     L  
Sbjct: 199 EPDIVSWNSIIAGLVDNASSR-ALRFVSMMHG---KGLKMDEFTFPSVLKACGCSDELML 254

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++IH +I+ +G                                E   +C+SALI  Y++
Sbjct: 255 GREIHCYIIKSGF-------------------------------ESSCYCISALIDMYSS 283

Query: 251 CGKMNDARRVFDRTTDTSSV-----MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           C  +++A ++FD+    SSV     +WNSM+SG++ N +  EAL +   M R+GV  D  
Sbjct: 284 CKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFY 343

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T + VL  C +   L    QVHG     G   D +V S L+D Y+K+             
Sbjct: 344 TFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQ------------- 390

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                             G I +A  +F  +P+K +++W+S+I G ++ GS   A  LF 
Sbjct: 391 ------------------GSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFM 432

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +M  L L++D F ++ V+ AC++++S + G+QV +     G +S+ +++T+L+D Y KCG
Sbjct: 433 DMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCG 492

Query: 486 FIK 488
            I+
Sbjct: 493 DIE 495



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 193/385 (50%), Gaps = 31/385 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N +IS ++K   +  AR +F++MP RN ++W +M+     +    EA+ L+ E+   
Sbjct: 39  FILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIES 98

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            +E  Q + F+ + V+ AC  +  +E GK +H HI    LD D VL ++L+++Y KCG  
Sbjct: 99  KIE--QPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSL 156

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A +V   +   +    + LI GYA  G ++DA ++FD+  +   V WNS+I+G + +N
Sbjct: 157 RDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLV-DN 215

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
             + AL     M   G+  D  T  SVL AC     L  G+++H +  K G        S
Sbjct: 216 ASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCIS 275

Query: 344 ALLDTYSKRGMPSDACKLFSE-LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           AL+D YS       +CKL SE  K++D    N+ ++                    +SL 
Sbjct: 276 ALIDMYS-------SCKLLSEATKIFDQYFRNSSVS--------------------ESLA 308

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
            WNSM+ G   NG  +EAL +  +M++  +R D ++ + V+  C N  +L L  QV   V
Sbjct: 309 LWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFV 368

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFI 487
              G + D ++ + L+D Y K G I
Sbjct: 369 ITSGYELDCVVGSILIDIYAKQGSI 393



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 7/261 (2%)

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F L+ +IS Y+ C  + DAR +FD     + V W +M+S   +++   EAL L+++M  +
Sbjct: 39  FILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIES 98

Query: 299 GVLEDASTLAS-VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
            + +    L S VL AC  +  +E GK VH H  +  +  D+++ +ALLD Y K G   D
Sbjct: 99  KIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRD 158

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           A ++F E+   +    NT+I  Y+  G I+DA  +F  MP   ++SWNS+I GL  N S 
Sbjct: 159 AQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASS 218

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
             AL     M+   L+MD+F+  SV+ AC     L LG ++   +   G +S     ++L
Sbjct: 219 -RALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISAL 277

Query: 478 VDFYCKCGFIK-----MDEYY 493
           +D Y  C  +       D+Y+
Sbjct: 278 IDMYSSCKLLSEATKIFDQYF 298



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 210/505 (41%), Gaps = 102/505 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +G+++H + +K G  +S   I+  L+ MY  C   ++A  +FD+  R 
Sbjct: 242 VLKACGCSDELMLGREIHCYIIKSGFESSCYCIS-ALIDMYSSCKLLSEATKIFDQYFRN 300

Query: 71  NCFS-----WNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFS----------------- 105
           +  S     WN+M+ G +  G   ++L + + M +     DF                  
Sbjct: 301 SSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSL 360

Query: 106 -------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               ++LI  +AK G +  A  LF  +P ++ +AW+S+I    R
Sbjct: 361 ASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCAR 420

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G  + A  LF ++   +   LQ D F+++ V+ AC+ LA+ ++GKQ+HS  L  G + +
Sbjct: 421 FGSDKLAFSLFMDM---IHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESE 477

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            V+ ++L+++Y KCGD   A  +   + E D    +++I G A  G+  +A  +  +  +
Sbjct: 478 GVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIE 537

Query: 267 TSSVMWNSMISGYISNNEDT----EALLLFHKMRRN--------------------GVLE 302
           + +      I G ++    +    EA  +F+ +  N                    G  E
Sbjct: 538 SGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFE 597

Query: 303 DASTL-------------ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
           +A  L             +S+L AC +    +    V  H       +DV V   L + Y
Sbjct: 598 EAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSP-EDVSVYIMLSNVY 656

Query: 350 SKRGM---------------PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  GM                  A K+F E+  +    +  +   ++  G       +  
Sbjct: 657 AALGMWDSVSKVRETVKKIGKKRAGKIFYEIP-FKFYFMEHLHLGHAKQGLNGGVVKVIY 715

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIE 419
            +    L+SWN++I GL+ N SP E
Sbjct: 716 PILEPDLVSWNNVIAGLADNASPYE 740



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 32/176 (18%)

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C     +++ K +H H  K G  + + + + ++  YSK                      
Sbjct: 13  CIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSK---------------------- 50

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                    C  I DA+++F  MP+++++SW +M+  L+ +  P EAL L+  M +  + 
Sbjct: 51  ---------CSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIE 101

Query: 434 M-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             ++F  ++V+ AC  + ++ELG+ V   +    LD D ++  +L+D Y KCG ++
Sbjct: 102 QPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLR 157


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 203/417 (48%), Gaps = 35/417 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++  + + G    + +LF+ MP  N F+ N L+S  A A  L     LF  MP+R+A+
Sbjct: 49  NHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAV 108

Query: 136 AWNSMIHCY----VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           ++N++I  +         A     L +E       R++     ++ ++ A + L     G
Sbjct: 109 SYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALG 168

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           +Q+H  I+  G    +   S LV++Y K G    A +V + M   +    + +I+G   C
Sbjct: 169 RQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRC 228

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
             + +AR VF+   D  S+ W +M++G   N   +EAL +F +MR  GV  D  T  S+L
Sbjct: 229 KMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSIL 288

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           +AC +L   E GKQ+H +  +     ++ V SAL+D YSK                    
Sbjct: 289 TACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSK-------------------- 328

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      C  I  A+ +FR M  K++ISW +MIVG  QNG   EA+ +F  M    
Sbjct: 329 -----------CRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDG 377

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ + F+L SVIS+CAN++SLE G Q      + GL     +S++LV  Y KCG I+
Sbjct: 378 IKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIE 434



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 195/428 (45%), Gaps = 72/428 (16%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+W+ +++ + K+G    + ++F+ M  KN   +N +I+G  +   ++ AR +F  M  R
Sbjct: 185 FTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDR 244

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++I W +M+    +NG   EA+ +F+ + +   E +  D +   +++ AC  LAA E GK
Sbjct: 245 DSITWTTMVTGLTQNGLQSEALDVFRRMRA---EGVGIDQYTFGSILTACGALAASEEGK 301

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH++ +    D +  +GS+LV++Y KC     A  V   M   +    +A+I GY   G
Sbjct: 302 QIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNG 361

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
              +A RVF                                +M+ +G+  +  TL SV+S
Sbjct: 362 CGEEAVRVFS-------------------------------EMQTDGIKPNDFTLGSVIS 390

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C++L  LE G Q H  A   G+   + V+SAL+  Y K G   DA +LF E+  +D + 
Sbjct: 391 SCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVS 450

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
              +++ Y+  G+ ++   +F  M          ++ G+  NG                 
Sbjct: 451 YTALVSGYAQFGKAKETIDLFEKM----------LLKGVKPNG----------------- 483

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT----IIGLDSDQIISTSLVDFYCKCGFIK 488
                +   V+SAC+    +E G   F  +     I+ LD      T ++D Y + G +K
Sbjct: 484 ----VTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHY---TCMIDLYSRSGRLK 536

Query: 489 MDEYYLMQ 496
             E ++ Q
Sbjct: 537 EAEEFIRQ 544



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 152/286 (53%), Gaps = 7/286 (2%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+  Y + G    A ++ + M +P+ F  +AL+S  A+   + D  R+F       +V +
Sbjct: 51  LLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSY 110

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-------TLASVLSACSSLGFLEHGKQ 325
           N++I+G+        A   +  + R   + D +       T++ ++ A S+LG    G+Q
Sbjct: 111 NALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQ 170

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH    ++G        S L+D Y+K G+  DA ++F E+ V + ++ NTMIT    C  
Sbjct: 171 VHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKM 230

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +E+A+ +F  M ++  I+W +M+ GL+QNG   EALD+F  M    + +D+++  S+++A
Sbjct: 231 VEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTA 290

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           C  +++ E G+Q+ A       D +  + ++LVD Y KC  I++ E
Sbjct: 291 CGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAE 336



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 147/337 (43%), Gaps = 48/337 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    +   GKQ+H + ++  + +  + + + L+ MY +C +   A  +F  M  +
Sbjct: 287 ILTACGALAASEEGKQIHAYTIRT-LYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCK 345

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISG-------------- 112
           N  SW AMI G+ + G  E+++++F+ M     + NDF+   +IS               
Sbjct: 346 NIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFH 405

Query: 113 ---------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                + K G ++ A  LF++MP  + +++ +++  Y + G A+
Sbjct: 406 CMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAK 465

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLDFDSVLG 210
           E + LF+++   L++ ++ +      V+ AC+    +E G    HS    +G+       
Sbjct: 466 ETIDLFEKM---LLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHY 522

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKMNDARRVFD---RTTD 266
           + +++LY + G    A + +  M   PD    + L+S     G M   +   +   +T  
Sbjct: 523 TCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDP 582

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            +   +  + S + S  E +E  LL   MR   V ++
Sbjct: 583 QNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKE 619



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 18/202 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC    S+  G Q H   L  G L   + +++ L+ +Y +CG+  DA  LFDEM
Sbjct: 385 LGSVISSCANLASLEEGAQFHCMALVSG-LRPYITVSSALVTLYGKCGSIEDAHRLFDEM 443

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P  +  S+ A++ G+ + G  ++++ LF  M  K    N  ++  ++S  +++G ++   
Sbjct: 444 PFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGC 503

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILAT 177
           + F+ M + + I      +  MI  Y R+G  +EA    +++        +C DA   AT
Sbjct: 504 SYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMP-------RCPDAIGWAT 556

Query: 178 VIGACADLAALEYGKQIHSHIL 199
           ++ AC     +E GK    ++L
Sbjct: 557 LLSACRLRGDMEIGKWAAENLL 578



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V + LL  Y++ G    A +LF  +   +    N +++  +    + D   +F +MP + 
Sbjct: 47  VLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRD 106

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLD-------LRMDKFSLASVISACANISSLE 453
            +S+N++I G S  G+P  A   +  + + +       +R  + +++ ++ A + +    
Sbjct: 107 AVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRA 166

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           LG QV  ++  +G  +     + LVD Y K G I
Sbjct: 167 LGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLI 200


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 154/595 (25%), Positives = 255/595 (42%), Gaps = 151/595 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLF 64
           LA+LL SC     +H  + L L    + ++   LP   +AN LL+ Y + G   DA  LF
Sbjct: 13  LAQLLLSCLAGDRLH--RLLPLAH-ARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLF 69

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------- 101
           D MP +N  SW + I    + G +E ++ LF    +                        
Sbjct: 70  DRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRA 129

Query: 102 ------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                             N +    LI+ +AK G +  A  +F+ +P +N + W ++I  
Sbjct: 130 VSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITG 189

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y + G    A+ LF ++  D V   + D F+LA+ + AC+ L  LE G+Q H +      
Sbjct: 190 YSQIGQGGVALELFGKMGLDGV---RPDRFVLASAVSACSALGFLEGGRQTHGY------ 240

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
                                       +  E D   ++ALI  Y  C +++ AR++FD 
Sbjct: 241 -------------------------AYRIAVETDASVINALIDLYCKCSRLSLARKLFDC 275

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + V W +MI+GY+ N+ D EA+ +F ++ + G   D    AS+L++C SL  +  G
Sbjct: 276 MENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQG 335

Query: 324 KQVHGHACKVGVI-------------------------------DDVIVASALLDTYSKR 352
           +QVH HA K  +                                DD I  +A+++ YS+ 
Sbjct: 336 RQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRL 395

Query: 353 GMPSDACKLFSELKV---------------------------------------YDTILL 373
           G  + A  +FS+++                                         D    
Sbjct: 396 GDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAG 455

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           +++I VYS    +EDAK +F  M N+ ++ WN+MI GL+QN    EA+ LF  +    L 
Sbjct: 456 SSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLA 515

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++F+  ++++  + + S+  G+Q  A++   G DSD  +S +L+D Y KCGFIK
Sbjct: 516 PNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIK 570



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 139/561 (24%), Positives = 235/561 (41%), Gaps = 144/561 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C    ++  G+Q+H   ++ G L+  + +   L+ +Y + G    A+L+FD +
Sbjct: 117 LASALRACAQSRAVSFGQQVHGVAVRIG-LDGNVYVGTALINLYAKVGCIDAAMLVFDAL 175

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
           P +N  +W A+I G+ ++G    +L+LF  M                             
Sbjct: 176 PVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGR 235

Query: 100 QKNDFSW-----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           Q + +++           N LI  + K   L  AR LF+ M  RN ++W +MI  Y++N 
Sbjct: 236 QTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNS 295

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ +F +L+    E  Q D F  A+++ +C  LAA+  G+Q+H+H +   L     
Sbjct: 296 CDAEAMAMFWQLSQ---EGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANL----- 347

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                     E D++  ++LI  YA C  + +AR VF+   +  
Sbjct: 348 --------------------------ESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDD 381

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ +N+MI GY    +   A+ +F KMR   +     T  S+L   SS   +E  KQ+HG
Sbjct: 382 AISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHG 441

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSD------------------------------- 357
              K G   D+   S+L+D YSK  +  D                               
Sbjct: 442 LIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEE 501

Query: 358 ACKLFSELKVY---------------------------------------DTILLNTMIT 378
           A KLF++L+V                                        D  + N +I 
Sbjct: 502 AVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALID 561

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y+ CG I++ + +F +   K +I WNSMI   +Q+G   EAL +F  M    +  +  +
Sbjct: 562 MYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVT 621

Query: 439 LASVISACANISSLELGEQVF 459
              V+SACA+   ++ G + F
Sbjct: 622 FVGVLSACAHAGLVDEGLRHF 642



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 45/277 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL   ++  +I + KQ+H   +K G  +  L   + L+ +Y +     DA  +F+ M  R
Sbjct: 423 LLGVSSSQSAIELSKQIHGLIVKSGT-SLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNR 481

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW-------------------- 106
           +   WNAMI G  +    E++++LFN +       N+F++                    
Sbjct: 482 DMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFH 541

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LI  +AK G +K  R LF     ++ I WNSMI  Y ++G A 
Sbjct: 542 AQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAE 601

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLG 210
           EA+ +F+ +    VE    +      V+ ACA    ++ G +    +     ++  +   
Sbjct: 602 EALYVFRMMGGTGVEP---NYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHY 658

Query: 211 SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS 246
           +S+VNL+G+ G  ++A + +  M  EP      +L+S
Sbjct: 659 ASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLS 695


>gi|224080303|ref|XP_002306089.1| predicted protein [Populus trichocarpa]
 gi|222849053|gb|EEE86600.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 217/410 (52%), Gaps = 11/410 (2%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR-NG 148
           ++ +LF+ MPQ+N +SWN +IS   K+  L  A+++F+    R+ + +NSM+  YV  +G
Sbjct: 41  EAQKLFDEMPQRNTYSWNTIISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDG 100

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           + R A+ LF E+ S +   ++ D   + +++   + L    YG+Q+HS+++  G D    
Sbjct: 101 YERNALELFVEMQS-IRNEIEIDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGF 159

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL---SALISGYANCGKMNDARRVFDRTT 265
           + SSL+++Y KCG F  A QV    +    F L   +A+++ Y   G M  A R+F R +
Sbjct: 160 VVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRES 219

Query: 266 D-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           +   SV WN++ISGY+ N    EAL LF  M  NGV  +  T  SVLSAC+ L  L+ GK
Sbjct: 220 ELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGK 279

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H    K G+     V S ++D Y K G    A  L     V  +  + +MI  +SS G
Sbjct: 280 EMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLLLTRGVRSSFSITSMIVGFSSQG 339

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVG---LSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            + +A  +F ++  K+ I W ++  G   L Q  +  E L  +  + K     D   L S
Sbjct: 340 NMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLREY--IAKEAAIPDALILIS 397

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             + CA  ++L  G+Q+   V  +G++ D   +T+++D Y KCG I   E
Sbjct: 398 AFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAE 447



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 223/464 (48%), Gaps = 78/464 (16%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++  ++L  SC        G+QLH + +K G   S   +++ L+ MY +CG   +A  +F
Sbjct: 130 VNLFSKLCNSC-------YGRQLHSYMVKTGNDRSGFVVSS-LIDMYSKCGCFKEACQVF 181

Query: 65  DEMPRRNCF---SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
               R   F   S NAM+  + + G  E +L+LF    + ND                  
Sbjct: 182 KGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELND------------------ 223

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
                       +++WN++I  YV+NG+  EA++LF  +  + V   + +     +V+ A
Sbjct: 224 ------------SVSWNTLISGYVQNGYPVEALKLFVCMGENGV---KWNEHTFGSVLSA 268

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CADL  L+ GK++H+ IL NGL   + + S +V++Y KCG+   A  +L        F +
Sbjct: 269 CADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLLLTRGVRSSFSI 328

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL--LLFHKMRRNG 299
           +++I G+++ G M +A R+FD   + +S++W ++ SGY+   +  EA   LL   + +  
Sbjct: 329 TSMIVGFSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQ-CEAFFELLREYIAKEA 387

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
            + DA  L S  + C+    L  GKQ+HG+  ++G+  D+   +A++D YSK G    A 
Sbjct: 388 AIPDALILISAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAE 447

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           KLF ++   D +L N M+                                G + +G  I+
Sbjct: 448 KLFLKVIERDLVLYNVMLA-------------------------------GYAHHGHEIK 476

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           A++LF  M +  +  D  +  +++SAC +   ++LGE+ F  +T
Sbjct: 477 AINLFQEMLERGVGPDAVTFVALLSACRHRGLVDLGEKTFYSMT 520



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 172/318 (54%), Gaps = 7/318 (2%)

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           + +L+ G   H   + +G     +  + LV+LY K    N A ++ + M + + +  + +
Sbjct: 1   MRSLKDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTI 60

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS-NNEDTEALLLFHKMR--RNGVL 301
           IS +     +  A+ +FD  +    V +NSM+SGY+S +  +  AL LF +M+  RN + 
Sbjct: 61  ISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSIRNEIE 120

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ S+++  S L    +G+Q+H +  K G      V S+L+D YSK G   +AC++
Sbjct: 121 IDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQV 180

Query: 362 FSELKV---YDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSP 417
           F   +    +D +  N M+  Y   G +E A  +F R       +SWN++I G  QNG P
Sbjct: 181 FKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYP 240

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
           +EAL LF  M +  ++ ++ +  SV+SACA++ +L++G+++ A +   GL S   + + +
Sbjct: 241 VEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGI 300

Query: 478 VDFYCKCGFIKMDEYYLM 495
           VD YCKCG +K  E  L+
Sbjct: 301 VDVYCKCGNMKYAESLLL 318


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/493 (27%), Positives = 228/493 (46%), Gaps = 95/493 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R    + A  LFD+MP R+ FSWN M+ G+++     ++ +LF++MP+K+  
Sbjct: 81  NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK-----E 159
           SWN ++SG+A+ G +  AR +FN MP RN+I+WN ++  YV NG  +EA RLF+     E
Sbjct: 141 SWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWE 200

Query: 160 LNS------------------DLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILV 200
           L S                   L +R+   D     T+I   A +  L   K++ +   +
Sbjct: 201 LISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPI 260

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---------------- 244
                D    +++V+ Y + G  + A +  + M   ++   +A+                
Sbjct: 261 R----DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGEL 316

Query: 245 ---------------ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                          I+GY   G +  AR++FD       V W ++ISGY  N    EAL
Sbjct: 317 FEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEAL 376

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            +F +M+R+G   + ST +  LS C+ +  LE GKQVHG   K G      V +ALL  Y
Sbjct: 377 NMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMY 436

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K                               CG  ++A  +F  +  K ++SWN+MI 
Sbjct: 437 FK-------------------------------CGSTDEANDVFEGIEEKDVVSWNTMIA 465

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G +++G   +AL LF +M K  ++ D+ ++  V+SAC++   ++ G + F       +D 
Sbjct: 466 GYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYF-----YSMDR 520

Query: 470 DQIISTSLVDFYC 482
           D  +  +   + C
Sbjct: 521 DYNVKPTSKHYTC 533



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 210/443 (47%), Gaps = 81/443 (18%)

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
           +WN  I   M+ GH + +L++FN MP+++  S+N +ISG+ +  +   AR LF+ MP R+
Sbjct: 48  TWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERD 107

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
             +WN M+  YVRN    EA +LF     DL+ +                          
Sbjct: 108 LFSWNVMLTGYVRNRRLGEAHKLF-----DLMPKK------------------------- 137

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
                       D V  +++++ Y + G  + A +V N M   +    + L++ Y + G+
Sbjct: 138 ------------DVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGR 185

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           + +ARR+F+  ++   + WN ++ GY+  N   +A  LF +M     + D  +  +++S 
Sbjct: 186 LKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM----PVRDVISWNTMISG 241

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-----Y 368
            + +G L   K++   +     I DV   +A++  Y + GM  +A K F E+ V     Y
Sbjct: 242 YAQVGDLSQAKRLFNES----PIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISY 297

Query: 369 DTIL--------------------------LNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           + +L                           NTMIT Y   G I  A+ +F  MP +  +
Sbjct: 298 NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCV 357

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW ++I G +QNG   EAL++F  M +     ++ + +  +S CA+I++LELG+QV  +V
Sbjct: 358 SWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQV 417

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
              G ++   +  +L+  Y KCG
Sbjct: 418 VKAGFETGCFVGNALLGMYFKCG 440



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 183/453 (40%), Gaps = 131/453 (28%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H G+      L +   N  L   N L+  Y++     DA  LFD MP R+  SWN MI 
Sbjct: 181 VHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMIS 240

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI----- 135
           G+ ++G   ++ +LFN  P ++ F+W  ++SG+ + G +  AR  F++MP +N I     
Sbjct: 241 GYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAM 300

Query: 136 --------------------------AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
                                     +WN+MI  Y +NG   +A +LF     D++ +  
Sbjct: 301 LAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLF-----DMMPQRD 355

Query: 170 CDAF---------------------------------ILATVIGACADLAALEYGKQIHS 196
           C ++                                   +  +  CAD+AALE GKQ+H 
Sbjct: 356 CVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHG 415

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            ++  G +    +G++L+ +Y KCG  + AN V   ++E D    + +I+GYA  G    
Sbjct: 416 QVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHG---- 471

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
               F R                       +AL+LF  M++ GV  D  T+  VLSACS 
Sbjct: 472 ----FGR-----------------------QALVLFESMKKAGVKPDEITMVGVLSACSH 504

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
            G ++ G +                 S   D   K       C                M
Sbjct: 505 SGLIDRGTE--------------YFYSMDRDYNVKPTSKHYTC----------------M 534

Query: 377 ITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMI 408
           I +    GR+E+A+++ R MP +    SW +++
Sbjct: 535 IDLLGRAGRLEEAENLMRNMPFDPGAASWGALL 567



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 31/251 (12%)

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D D V  +  ++ + + G  +SA +V N M        +A+ISGY    K + AR +FD+
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             +     WN M++GY+ N    EA  LF  M +    +D  +  ++LS  +  GF++  
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK----KDVVSWNAMLSGYAQNGFVDEA 158

Query: 324 KQVHGHACKVGVID---------------------------DVIVASALLDTYSKRGMPS 356
           ++V         I                            ++I  + L+  Y KR M  
Sbjct: 159 REVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLG 218

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DA +LF  + V D I  NTMI+ Y+  G +  AK +F   P + + +W +M+ G  QNG 
Sbjct: 219 DARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGM 278

Query: 417 PIEALDLFCNM 427
             EA   F  M
Sbjct: 279 VDEARKYFDEM 289



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 18/262 (6%)

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           K+PD    +  IS +   G  + A RVF+     SSV +N+MISGY+ N + + A  LF 
Sbjct: 42  KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD 101

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKR 352
           KM    +      L          G++ + +    H    +    DV+  +A+L  Y++ 
Sbjct: 102 KMPERDLFSWNVMLT---------GYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQN 152

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G   +A ++F+++   ++I  N ++  Y   GR+++A+ +F +  N  LISWN ++ G  
Sbjct: 153 GFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYV 212

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           +     +A  LF   +++ +R D  S  ++IS  A +  L   +++F    I     D  
Sbjct: 213 KRNMLGDARQLF---DRMPVR-DVISWNTMISGYAQVGDLSQAKRLFNESPI----RDVF 264

Query: 473 ISTSLVDFYCKCGFIKMDEYYL 494
             T++V  Y + G +     Y 
Sbjct: 265 TWTAMVSGYVQNGMVDEARKYF 286



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G       + N LL MY +CG+  +A  +F+ +  ++
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCF-VGNALLGMYFKCGSTDEANDVFEGIEEKD 456

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI G+ + G   ++L LF  M     + ++ +   ++S  + +G +      F 
Sbjct: 457 VVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFY 516

Query: 128 DMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M R   +   S     MI    R G   EA  L + +  D        A     ++GA 
Sbjct: 517 SMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFD------PGAASWGALLGAS 570

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 E G++  + ++      +S +   L NLY   G +    ++ + M+E
Sbjct: 571 RIHGNTELGEKA-AEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMRE 622



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           + K  D +  N  I+ +   G  + A  +F +MP +S +S+N+MI G  +N     A DL
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M + DL    FS   +++       L    ++F  +       D +   +++  Y +
Sbjct: 100 FDKMPERDL----FSWNVMLTGYVRNRRLGEAHKLFDLMP----KKDVVSWNAMLSGYAQ 151

Query: 484 CGFI 487
            GF+
Sbjct: 152 NGFV 155


>gi|224080297|ref|XP_002306087.1| predicted protein [Populus trichocarpa]
 gi|222849051|gb|EEE86598.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/410 (32%), Positives = 217/410 (52%), Gaps = 11/410 (2%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR-NG 148
           ++ +LF+ MPQ+N +SWN +IS   K+  L  A+++F+    R+ + +NSM+  YV  +G
Sbjct: 41  EAQKLFDEMPQRNTYSWNTIISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDG 100

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           + R A+ LF E+ S   E ++ D   + +++   + L    YG+Q+HS+++  G D    
Sbjct: 101 YERNALELFVEMQSKRNE-IEIDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGF 159

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL---SALISGYANCGKMNDARRVFDRTT 265
           + SSL+++Y KCG F  A QV    +    F L   +A+++ Y   G M  A R+F R +
Sbjct: 160 VVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRES 219

Query: 266 D-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           +   SV WN++ISGY+ N    EAL LF  M  NGV  +  T  SVLSAC+ L  L+ GK
Sbjct: 220 ELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGK 279

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H    K G+     V S ++D Y K G    A  L     V  +  + +MI  YSS G
Sbjct: 280 EMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLHLTRGVRSSFSITSMIVGYSSQG 339

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVG---LSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            + +A  +F ++  K+ I W ++  G   L Q  +  E L  +  + K     D   L +
Sbjct: 340 NMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFELLREY--IAKEAAIPDALILIN 397

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             + CA  ++L  G+Q+   V  +G++ D   +T+++D Y KCG I   E
Sbjct: 398 AFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAE 447



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 222/464 (47%), Gaps = 78/464 (16%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++  ++L  SC        G+QLH + +K G   S   +++ L+ MY +CG   +A  +F
Sbjct: 130 VNLFSKLCNSC-------YGRQLHSYMVKTGNDRSGFVVSS-LIDMYSKCGCFKEACQVF 181

Query: 65  DEMPRRNCF---SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
               R   F   S NAM+  + + G  E +L+LF    + ND                  
Sbjct: 182 KGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELND------------------ 223

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
                       +++WN++I  YV+NG+  EA++LF  +  + V   + +     +V+ A
Sbjct: 224 ------------SVSWNTLISGYVQNGYPVEALKLFVCMGENGV---KWNEHTFGSVLSA 268

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CADL  L+ GK++H+ IL NGL   + + S +V++Y KCG+   A  +         F +
Sbjct: 269 CADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLHLTRGVRSSFSI 328

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL--LLFHKMRRNG 299
           +++I GY++ G M +A R+FD   + +S++W ++ SGY+   +  EA   LL   + +  
Sbjct: 329 TSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQ-CEAFFELLREYIAKEA 387

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
            + DA  L +  + C+    L  GKQ+HG+  ++G+  D+   +A++D YSK G    A 
Sbjct: 388 AIPDALILINAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDMYSKCGSIPYAE 447

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           KLF ++   D +L N M+                                G + +G  I+
Sbjct: 448 KLFLKVIERDLVLYNVMLA-------------------------------GYAHHGHEIK 476

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           A++LF  M +  +  D  +  +++SAC +   ++LGE+ F  +T
Sbjct: 477 AINLFQEMLERGVGPDAVTFVALLSACRHRGLVDLGEKTFYSMT 520



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 170/314 (54%), Gaps = 7/314 (2%)

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           + +L+ G   H   + +G     +  + LV+LY K    N A ++ + M + + +  + +
Sbjct: 1   MRSLKDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTI 60

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS-NNEDTEALLLFHKM--RRNGVL 301
           IS +     +  A+ +FD  +    V +NSM+SGY+S +  +  AL LF +M  +RN + 
Sbjct: 61  ISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSKRNEIE 120

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ S+++  S L    +G+Q+H +  K G      V S+L+D YSK G   +AC++
Sbjct: 121 IDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQV 180

Query: 362 FSELKV---YDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSP 417
           F   +    +D +  N M+  Y   G +E A  +F R       +SWN++I G  QNG P
Sbjct: 181 FKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYP 240

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
           +EAL LF  M +  ++ ++ +  SV+SACA++ +L++G+++ A +   GL S   + + +
Sbjct: 241 VEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGI 300

Query: 478 VDFYCKCGFIKMDE 491
           VD YCKCG +K  E
Sbjct: 301 VDVYCKCGNMKYAE 314


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 228/481 (47%), Gaps = 74/481 (15%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           +T  S+   +Q H H LK G+ N T  +A +LL  Y       DA L+ D          
Sbjct: 24  STTASLSQTRQAHAHILKTGLFNDT-HLATKLLSHYANNMCFADATLVLD---------- 72

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
                                ++P+ N FS++ LI  F+K  +   A + F+ M      
Sbjct: 73  ---------------------LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQM------ 105

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
                                       L   L  D  +L + + ACA L+AL+  +Q+H
Sbjct: 106 ----------------------------LTRGLMPDNRVLPSAVKACAGLSALKPARQVH 137

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
               V+G D DS + SSLV++Y KC     A++V + M EPD    SAL++ YA  G ++
Sbjct: 138 GIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVD 197

Query: 256 DARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           +A+R+F    D+      + WN MI+G+  +   +EA+L+F  M   G   D +T++SVL
Sbjct: 198 EAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVL 257

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            A   L  L  G  +HG+  K G++ D  V+SAL+D Y K    S+  ++F ++   D  
Sbjct: 258 PAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVG 317

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNM 427
             N  I   S  G++E +  +FR + ++ +    +SW SMI   SQNG  +EAL+LF  M
Sbjct: 318 SCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREM 377

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
               ++ +  ++  ++ AC NI++L  G+         G+ +D  + ++L+D Y KCG I
Sbjct: 378 QIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRI 437

Query: 488 K 488
           +
Sbjct: 438 Q 438



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 199/395 (50%), Gaps = 42/395 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP-- 130
           F  ++++  ++K      + ++F+ M + +  SW+ L++ +A+ G +  A+ LF++M   
Sbjct: 150 FVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDS 209

Query: 131 --RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
             + N I+WN MI  +  +G   EAV +F +++   +   + D   +++V+ A  DL  L
Sbjct: 210 GVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMH---LRGFEPDGTTISSVLPAVGDLEDL 266

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             G  IH +++  GL  D  + S+L+++YGKC   +  +QV + M   D    +A I G 
Sbjct: 267 VMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGL 326

Query: 249 ANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  G++  + R+F    D+  + + V W SMI+    N  D EAL LF +M+  GV  ++
Sbjct: 327 SRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNS 386

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  +L AC ++  L HGK  H  + + G+  DV V SAL+D Y+K             
Sbjct: 387 VTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAK------------- 433

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             CGRI+ ++  F  +P K+L+ WN++I G + +G   EA+++F
Sbjct: 434 ------------------CGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIF 475

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             M +   + D  S   V+SAC+     E G   F
Sbjct: 476 DLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 193/463 (41%), Gaps = 113/463 (24%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G  +H + +K+G+++    +++ L+ MY +C   ++   +FD+M   +  S NA I G 
Sbjct: 268 MGILIHGYVIKQGLVSDKC-VSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGL 326

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            + G  E SL+LF                           R L +     N ++W SMI 
Sbjct: 327 SRNGQVESSLRLF---------------------------RQLKDQGMELNVVSWTSMIA 359

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
           C  +NG   EA+ LF+E+    +  ++ ++  +  ++ AC ++AAL +GK  H   L  G
Sbjct: 360 CCSQNGRDMEALELFREMQ---IAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           +  D  +GS+L+++Y KCG   ++    + +   +  C +A+I+GYA  GK  +A  +FD
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                                           M+R+G   D  +   VLSACS  G  E 
Sbjct: 477 L-------------------------------MQRSGQKPDIISFTCVLSACSQSGLTEE 505

Query: 323 GK--------------QVHGHACKVGVIDDVIVASALLDTYSK-RGMP--SDAC---KLF 362
           G               +V  +AC V ++     A  L   Y+  R MP   DAC    L 
Sbjct: 506 GSYYFNSMSSKYGIEARVEHYACMVTLLSR---AGKLEQAYAMIRRMPVNPDACVWGALL 562

Query: 363 SELKVYDTILLNTMIT-------------------VYSSCGRIEDAKHIFRTMPNKSL-- 401
           S  +V++ + L  +                     +Y+S G   +   +   M NK L  
Sbjct: 563 SSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRK 622

Query: 402 ---ISW----NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
               SW    N + + L+ + S  +   +  N++KL + M K 
Sbjct: 623 NPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKL 665



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 112/242 (46%), Gaps = 35/242 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++  GK  H   L++GI ++ + + + L+ MY +CG    + + FD +P +
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGI-STDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKND-FSWNMLISGFAKAGELKTARTLF 126
           N   WNA+I G+   G  ++++++F++M    QK D  S+  ++S  +++G  +     F
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M  +  I      +  M+    R G   +A  + + +       +  DA +   ++ +
Sbjct: 511 NSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRM------PVNPDACVWGALLSS 564

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSS---------LVNLYGKCGDFNSANQVLNM 232
           C          ++H+++ +  +  + +             L N+Y   G +N  N+V +M
Sbjct: 565 C----------RVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDM 614

Query: 233 MK 234
           MK
Sbjct: 615 MK 616


>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
          Length = 820

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 157/563 (27%), Positives = 243/563 (43%), Gaps = 114/563 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G L +    I  +L+  Y +C +   A +LF ++
Sbjct: 63  GEILQGCVYERDLCTGKQIHARILKNGDLYARNEYIETKLVIFYAKCDDLEIAEVLFSKL 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 123 RVRNVFSWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGR 182

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 183 GVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNG 242

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  ++  D VE  +     ++T + A A++A +E G Q H+  +VNGL+ D++
Sbjct: 243 MNEEAIRLLSDMRKDGVEPTR---VTVSTCLSASANMAGVEEGTQCHAIAIVNGLELDNI 299

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+SL+N Y K G    A  + + M E D    + LISGY   G + D            
Sbjct: 300 LGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQQGLVED------------ 347

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                              A+ +   MR   +  D  TLA+++SA +    L+ GK+V  
Sbjct: 348 -------------------AIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQC 388

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              +  +  D+++AS  +D Y+K G   DA K+F      D IL NT++  Y+  G   +
Sbjct: 389 XCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSGE 448

Query: 389 AKHIFRTM------PN---------------------------------KSLISWNSMIV 409
           A  +F  M      PN                                  +LISW +M+ 
Sbjct: 449 ALRLFYEMQLESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTTMMN 508

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLD 468
           G+ QNG   EA+     M +  +R + FS+   +SA AN++S   G  +   +   +   
Sbjct: 509 GMVQNGCSEEAIHFLRKMQESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHS 568

Query: 469 SDQIISTSLVDFYCKCGFIKMDE 491
           S   I TSLVD Y KCG I   E
Sbjct: 569 SSASIETSLVDMYAKCGDINKAE 591



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 228/497 (45%), Gaps = 52/497 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C        G+ +H + LK G L   + +A+ L  MY +CG   DA  +FDE+P R
Sbjct: 168 VFKACGALQWSRFGRGVHGYVLKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPER 226

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM---------- 108
           N  +WNA++ G+++ G  E++++L + M +                S NM          
Sbjct: 227 NVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEGTQCH 286

Query: 109 -----------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G   
Sbjct: 287 AIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGYVQQGLVE 346

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ + + +    +E+L+ D   LAT++ A A    L+ GK++      + L+ D VL S
Sbjct: 347 DAIYMCQLMR---LEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLESDIVLAS 403

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDT 267
           + +++Y KCG    A +V +   E D    + L++ YA  G   +A R+F      +   
Sbjct: 404 TAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQLESVPP 463

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG---- 323
           + + WN +I   + N E  EA  +F +M+ +G+  +  +  ++++     G  E      
Sbjct: 464 NVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTTMMNGMVQNGCSEEAIHFL 523

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT-MITVYSS 382
           +++     +       +  SA  +  S     S    +   L+   +  + T ++ +Y+ 
Sbjct: 524 RKMQESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIETSLVDMYAK 583

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG I  A+ +F +  +  L  +N+MI   +  G+  EA+ L+ ++  +  + D  +  S+
Sbjct: 584 CGDINKAERVFESKLSNELPLYNAMISAYALXGNVTEAVALYRSLEDMGXKPDSITFTSL 643

Query: 443 ISACANISSLELGEQVF 459
           +SAC +   ++   +VF
Sbjct: 644 LSACNHAGDIDQAIRVF 660



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           S  S+   +  L +NG   EAL L   M+  +LR+       ++  C     L  G+Q+ 
Sbjct: 23  SSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIH 82

Query: 460 ARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
           AR+   G     ++ I T LV FY KC  +++ E
Sbjct: 83  ARILKNGDLYARNEYIETKLVIFYAKCDDLEIAE 116


>gi|255549182|ref|XP_002515645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545188|gb|EEF46697.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 758

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 218/448 (48%), Gaps = 67/448 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SCN+ +   +G Q+H H +K G       +  +LLQMY + G    A LLFD +P
Sbjct: 71  ASVLDSCNSQN---LGTQVHAHAIKTGFHCHDF-VQTKLLQMYAKFGCLECAHLLFDSVP 126

Query: 69  RRNCFSWNAMIE----------------------------------------GFMKLGHK 88
            RN  SW A++                                         G ++LG +
Sbjct: 127 LRNLHSWLAILNVYFDHGLFDEAFSLFQELLFEDIELEFFAFPLVFKICSGLGMVELGRQ 186

Query: 89  ------------EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP----RR 132
                       + ++++F+    +N+ S+N +I G+   G++  A+  F+ M     +R
Sbjct: 187 LHAMVMKRCGDMDNAVKIFSRFSLRNEVSYNTMIVGYCAIGDVSKAKEFFDQMEVSGVKR 246

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
             I+WNSMI  YV N    EA+ +F+ L   L E ++ D+F L +V+ ACAD A+L  GK
Sbjct: 247 ERISWNSMISGYVDNFMFDEALNMFRNL---LKEGIEPDSFTLGSVLTACADTASLRQGK 303

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           +IHS+ +V  L  ++ +G +L+ +Y KC D  +A  V N + E D    + LIS YA C 
Sbjct: 304 EIHSYAIVKSLQSNTFVGGALIEMYSKCQDPMAAQLVFNEVIERDAPTWNVLISCYARCN 363

Query: 253 KMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           +  + R +  +  +     +   WN +++GY+ N     A+ LF +M    V  D  T+ 
Sbjct: 364 QNEEIRNLLQKMQEDGFEPNIYTWNGILAGYVENGHLDLAMQLFSEMHTGDVRPDIFTVG 423

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            +L ACS L  LE GKQVH H+ +     DV + + L+D Y+K G    A   +S +  +
Sbjct: 424 IILPACSKLATLERGKQVHAHSIRCYYDSDVHIGAGLVDMYAKCGSLQYAQLAYSRISNH 483

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTM 396
           + +  N M+T Y+  G  E+   +FRT+
Sbjct: 484 NLVCHNVMLTAYAMHGYGEEGIALFRTI 511



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 205/397 (51%), Gaps = 33/397 (8%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           +DF    L+  +AK G L+ A  LF+ +P RN  +W ++++ Y  +G   EA  LF+EL 
Sbjct: 98  HDFVQTKLLQMYAKFGCLECAHLLFDSVPLRNLHSWLAILNVYFDHGLFDEAFSLFQEL- 156

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
             L E ++ + F    V   C+ L  +E G+Q+H+ ++                   +CG
Sbjct: 157 --LFEDIELEFFAFPLVFKICSGLGMVELGRQLHAMVM------------------KRCG 196

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSMIS 277
           D ++A ++ +     ++   + +I GY   G ++ A+  FD+          + WNSMIS
Sbjct: 197 DMDNAVKIFSRFSLRNEVSYNTMIVGYCAIGDVSKAKEFFDQMEVSGVKRERISWNSMIS 256

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY+ N    EAL +F  + + G+  D+ TL SVL+AC+    L  GK++H +A    +  
Sbjct: 257 GYVDNFMFDEALNMFRNLLKEGIEPDSFTLGSVLTACADTASLRQGKEIHSYAIVKSLQS 316

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM- 396
           +  V  AL++ YSK   P  A  +F+E+   D    N +I+ Y+ C + E+ +++ + M 
Sbjct: 317 NTFVGGALIEMYSKCQDPMAAQLVFNEVIERDAPTWNVLISCYARCNQNEEIRNLLQKMQ 376

Query: 397 -----PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                PN  + +WN ++ G  +NG    A+ LF  M+  D+R D F++  ++ AC+ +++
Sbjct: 377 EDGFEPN--IYTWNGILAGYVENGHLDLAMQLFSEMHTGDVRPDIFTVGIILPACSKLAT 434

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           LE G+QV A       DSD  I   LVD Y KCG ++
Sbjct: 435 LERGKQVHAHSIRCYYDSDVHIGAGLVDMYAKCGSLQ 471



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 70/319 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    S+  GK++H + + K + ++T  +   L++MY +C +P  A L+F   
Sbjct: 286 LGSVLTACADTASLRQGKEIHSYAIVKSLQSNTF-VGGALIEMYSKCQDPMAAQLVF--- 341

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                   N +IE                    ++  +WN+LIS +A+  + +  R L  
Sbjct: 342 --------NEVIE--------------------RDAPTWNVLISCYARCNQNEEIRNLLQ 373

Query: 128 DMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            M       N   WN ++  YV NG    A++LF E+++  V     D F +  ++ AC+
Sbjct: 374 KMQEDGFEPNIYTWNGILAGYVENGHLDLAMQLFSEMHTGDVRP---DIFTVGIILPACS 430

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            LA LE GKQ+H+H +    D D  +G+ LV++Y                          
Sbjct: 431 KLATLERGKQVHAHSIRCYYDSDVHIGAGLVDMY-------------------------- 464

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                A CG +  A+  + R ++ + V  N M++ Y  +    E + LF  +R  G   D
Sbjct: 465 -----AKCGSLQYAQLAYSRISNHNLVCHNVMLTAYAMHGYGEEGIALFRTIRATGFQPD 519

Query: 304 ASTLASVLSACSSLGFLEH 322
             T  SVL++C   G +EH
Sbjct: 520 NVTFLSVLASCVHAGLVEH 538


>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 210/450 (46%), Gaps = 68/450 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   +R G+   A ++FDE P +N  SWN MI G+ + G  E++  LF+ M  +N  
Sbjct: 107 NAMIVGLIRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEMEDRNVI 166

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W  ++SG+ +AGE++    LF  MP+RN ++W +MI  +  NGF  +A+ LF E+    
Sbjct: 167 TWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGA 226

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD---FDSVLGSSLVNLYGKCG 221
                 + FI  ++  ACA L     GKQ+H+ ++  GLD   +D  L   L+ +Y   G
Sbjct: 227 DITPNIETFI--SLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIG 284

Query: 222 DFNSANQVLN--------------------------------MMKEPDDFCLSALISGYA 249
             + A+ + N                                 M   D    +++I GY 
Sbjct: 285 FMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYL 344

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             G +++A  +F    +  +V W +MISG++ N    EA  LF +M   GV   +ST A 
Sbjct: 345 VIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAI 404

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +  A  ++  L+ G+Q+H    K                                L   D
Sbjct: 405 LFGAAGAVASLDQGRQLHAMLTKT-------------------------------LSDND 433

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            IL N++I++Y+ CG I +A  IF  M +  LISWNSMI+G S +G   EAL++F  M  
Sbjct: 434 LILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFEAMVD 493

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVF 459
                +  +   V+SAC++   +  G ++F
Sbjct: 494 SGTHPNSVTFLGVLSACSHAGLINQGWEIF 523



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 213/478 (44%), Gaps = 78/478 (16%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y R G   +A  LFD MP RN  S+NA++ G ++ G   ++++LF  MP++N  SW
Sbjct: 16  LLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVVSW 75

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++ G A AG++  A++LF +MP RN ++WN+MI   +RNG    A  +F E       
Sbjct: 76  TSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDE------- 128

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
                                      + +    NG          ++  Y + G    A
Sbjct: 129 -------------------------SPVKNAASWNG----------MIAGYAENGRMEEA 153

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             + + M++ +    ++++SGY   G++ +   +F      + V W +MI G+  N    
Sbjct: 154 RALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYE 213

Query: 287 EALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD------- 338
           +ALLLF +M+R   +  +  T  S+  AC+ LGF   GKQ+H      G+ +D       
Sbjct: 214 DALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLS 273

Query: 339 --------------------------VIVASA--LLDTYSKRGMPSDACKLFSELKVYDT 370
                                      +V S   +++ Y + G+   A  LF  + V D 
Sbjct: 274 KGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRDK 333

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           I   +MI  Y   G + +A  +F  MP K  ++W +MI G  +N    EA  LF  M   
Sbjct: 334 ITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQ 393

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +R    + A +  A   ++SL+ G Q+ A +T    D+D I+  SL+  Y KCG I+
Sbjct: 394 GVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDNDLILENSLISMYAKCGEIR 451



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 154/325 (47%), Gaps = 37/325 (11%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALL 62
           I+    L  +C       +GKQLH   + +G+ N      ++  L+ MY   G    A  
Sbjct: 232 IETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHY 291

Query: 63  LFDEMPRRNCF-SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
           +F++        S N MI G++++G  +K+  LF+ MP ++  +W  +I G+   G +  
Sbjct: 292 IFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSE 351

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A +LF  MP ++A+AW +MI  +VRN    EA  LF E+ +  V  L     IL    GA
Sbjct: 352 ACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAIL---FGA 408

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
              +A+L+ G+Q+H+ +     D D +L +SL+++Y KCG+  +A ++ + M   D    
Sbjct: 409 AGAVASLDQGRQLHAMLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISW 468

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +++I G+++ G  N+A  VF+   D+                               G  
Sbjct: 469 NSMIMGFSHHGLANEALEVFEAMVDS-------------------------------GTH 497

Query: 302 EDASTLASVLSACSSLGFLEHGKQV 326
            ++ T   VLSACS  G +  G ++
Sbjct: 498 PNSVTFLGVLSACSHAGLINQGWEI 522



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 41/258 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L  +     S+  G+QLH   L K + ++ L + N L+ MY +CG   +A  +F +M 
Sbjct: 403 AILFGAAGAVASLDQGRQLHA-MLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMI 461

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTART 124
             +  SWN+MI GF   G   ++L++F  M       N  ++  ++S  + AG +     
Sbjct: 462 SHDLISWNSMIMGFSHHGLANEALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWE 521

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRL---------------------FK 158
           +FN M    A+      +  M++   R G  +EA  L                     F 
Sbjct: 522 IFNAMSDVFAVQPGLEHYICMVNLLGRAGKLKEAEELILGLPLERNHAIWGALLGVCSFS 581

Query: 159 ELNSDLVER-----LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS---VLG 210
           E N+D+ +R     L+ D       +  C   AA   G+ I  H L   +       V G
Sbjct: 582 EKNADIAKRAATRILELDPLNAPAHVLLCNIYAA--SGQHIEEHKLRKEMGLKGVKKVPG 639

Query: 211 SSLVNLYGKCGDFNSANQ 228
            S + L G+   F S ++
Sbjct: 640 CSWIVLNGRVHVFLSGDK 657


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 243/522 (46%), Gaps = 97/522 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      + +GKQ+H H  K G    ++ +AN L+ +Y +CG+      +FD +  R
Sbjct: 16  LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 75

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           N  SWN++I         E +L+ F      NV P                         
Sbjct: 76  NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 135

Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                     + N F  N L++ + K G+L +++ L      R+ + WN+++    +N  
Sbjct: 136 QVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 195

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSV 208
             EA+   +E+   ++E ++ D F +++V+ AC+ L  L  GK++H++ L NG LD +S 
Sbjct: 196 LLEALEYLREM---VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 252

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+LV++Y                                NC ++   RRVFD   D  
Sbjct: 253 VGSALVDMY-------------------------------CNCKQVLSGRRVFDGMFDRK 281

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVH 327
             +WN+MI+GY  N  D EALLLF  M  + G+L +++T+A V+ AC   G     + +H
Sbjct: 282 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 341

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   K G+  D  V + L+D YS+ G    A ++F +++  D +  NTMIT Y      E
Sbjct: 342 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 401

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA  +   M N        +   +S+  S            ++ L+ +  +L +++ +CA
Sbjct: 402 DALLLLHKMQN--------LERKVSKGAS------------RVSLKPNSITLMTILPSCA 441

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            +S+L  G+++ A      L +D  + ++LVD Y KCG ++M
Sbjct: 442 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQM 483



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 227/525 (43%), Gaps = 119/525 (22%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI--- 79
           +GKQ+H + L+KG LNS   I N L+ MY + G    + +L      R+  +WN ++   
Sbjct: 133 MGKQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 190

Query: 80  ------------------EG-------------------FMKLGHKEKSLQLFNVMPQKN 102
                             EG                    ++ G +  +  L N    +N
Sbjct: 191 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 250

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F  + L+  +    ++ + R +F+ M  R    WN+MI  Y +N   +EA+ LF  +  
Sbjct: 251 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF--IGM 308

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           +    L  ++  +A V+ AC    A    + IH  ++  GLD D  + ++L+++Y + G 
Sbjct: 309 EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG- 367

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                         K++ A R+F +  D   V WN+MI+GY+ +
Sbjct: 368 ------------------------------KIDIAMRIFGKMEDRDLVTWNTMITGYVFS 397

Query: 283 NEDTEALLLFHKMR-----------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
               +ALLL HKM+           R  +  ++ TL ++L +C++L  L  GK++H +A 
Sbjct: 398 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 457

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  +  DV V SAL+D Y+K G     C   S  KV+D I                    
Sbjct: 458 KNNLATDVAVGSALVDMYAKCG-----CLQMSR-KVFDQI-------------------- 491

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                P K++I+WN +I+    +G+  EA+DL   M    ++ ++ +  SV +AC++   
Sbjct: 492 -----PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 546

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           ++ G ++F  +    G++        +VD   + G IK + Y LM
Sbjct: 547 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK-EAYQLM 590



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 152/326 (46%), Gaps = 68/326 (20%)

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGD 222
           +V  ++ D +    ++ A ADL  +E GKQIH+H+   G   DSV + ++LVNLY KCGD
Sbjct: 2   IVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGD 61

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
           F +                                 +VFDR ++ + V WNS+IS   S 
Sbjct: 62  FGA-------------------------------VYKVFDRISERNQVSWNSLISSLCSF 90

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVGVIDDV 339
            +   AL  F  M    V   + TL SV++ACS+L   E    GKQVH +  + G ++  
Sbjct: 91  EKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF 150

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           I+                                NT++ +Y   G++  +K +  +   +
Sbjct: 151 II--------------------------------NTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            L++WN+++  L QN   +EAL+    M    +  D+F+++SV+ AC+++  L  G+++ 
Sbjct: 179 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 238

Query: 460 ARVTIIG-LDSDQIISTSLVDFYCKC 484
           A     G LD +  + ++LVD YC C
Sbjct: 239 AYALKNGSLDENSFVGSALVDMYCNC 264



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 162/369 (43%), Gaps = 83/369 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C+    +  GK+LH + LK G L+    + + L+ MY  C        +FD M
Sbjct: 218 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 277

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMP----------- 99
             R    WNAMI G+ +  H +++L LF                  V+P           
Sbjct: 278 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 337

Query: 100 ------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                        ++ F  N L+  +++ G++  A  +F  M  R+ + WN+MI  YV +
Sbjct: 338 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 397

Query: 148 GFAREAVRLFKELNSDLVER----------LQCDAFILATVIGACADLAALEYGKQIHSH 197
               +A+ L  ++ +  +ER          L+ ++  L T++ +CA L+AL  GK+IH++
Sbjct: 398 EHHEDALLLLHKMQN--LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 455

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
            + N L  D  +GS+LV++Y KCG                  CL               +
Sbjct: 456 AIKNNLATDVAVGSALVDMYAKCG------------------CLQM-------------S 484

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R+VFD+    + + WN +I  Y  +    EA+ L   M   GV  +  T  SV +ACS  
Sbjct: 485 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 544

Query: 318 GFLEHGKQV 326
           G ++ G ++
Sbjct: 545 GMVDEGLRI 553



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 43/313 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    ++  GK++H + +K   L + + + + L+ MY +CG    +  +FD++
Sbjct: 433 LMTILPSCAALSALAKGKEIHAYAIKNN-LATDVAVGSALVDMYAKCGCLQMSRKVFDQI 491

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P++N  +WN +I  +   G+ ++++ L  +M     + N+ ++  + +  + +G +    
Sbjct: 492 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 551

Query: 124 TLFNDM-PRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILAT- 177
            +F  M P       +    C V    R G  +EA +L   +  D  +     + + A+ 
Sbjct: 552 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 611

Query: 178 -----VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
                 IG  A    ++    + SH ++            L N+Y   G ++ A +V   
Sbjct: 612 IHNNLEIGEIAAQNLIQLEPNVASHYVL------------LANIYSSAGLWDKATEVRRN 659

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           MKE         +     C  +     V       SS   +  +SGY+          L+
Sbjct: 660 MKEQG-------VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLET--------LW 704

Query: 293 HKMRRNGVLEDAS 305
            +MR+ G + D S
Sbjct: 705 ERMRKEGYVPDTS 717



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 36/191 (18%)

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSD 357
           G+  D     ++L A + L  +E GKQ+H H  K G  +D V VA               
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVA--------------- 49

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                           NT++ +Y  CG       +F  +  ++ +SWNS+I  L      
Sbjct: 50  ----------------NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKW 93

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANI---SSLELGEQVFARVTIIGLDSDQIIS 474
             AL+ F  M   ++    F+L SV++AC+N+     L +G+QV A     G  +  II+
Sbjct: 94  EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN 153

Query: 475 TSLVDFYCKCG 485
           T LV  Y K G
Sbjct: 154 T-LVAMYGKLG 163



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
           L ++ D ++  +++ A A++  +ELG+Q+ A V   G   D + ++ +LV+ Y KCG
Sbjct: 4   LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60


>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
 gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
          Length = 703

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 244/523 (46%), Gaps = 110/523 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C++   +  GK++H   L +G L+S++ + N L+ MY RC     A ++FD++
Sbjct: 90  LSSVLGACSSLRDLEEGKKIHSRALARG-LSSSIIVQNALVSMYARCSRLDVARVVFDKI 148

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKNDFS------------------- 105
             ++  SWNAMI    + G  E++LQLF  M   P +  F+                   
Sbjct: 149 ESKSVVSWNAMIAACARQGEAEQALQLFKRMELEPNEVTFASVFNACSLLPDHREVGKRI 208

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             +++ + K G++  AR +FN +  +N ++WN+M+  Y +N   
Sbjct: 209 HDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLD 268

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           REA+ ++ E+   + +++Q D   +   +G  A L  L+ G ++H   + +G D +  + 
Sbjct: 269 REALEVYHEM---VAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSNIKVQ 325

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+++YGK                               C +++ ARRVF +      V
Sbjct: 326 NALISMYGK-------------------------------CNELDAARRVFSKVRAHDVV 354

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH- 329
            W ++I  Y  +  + EAL L+ +M   G+  D  T  SVLSACS+   LE G+ +H   
Sbjct: 355 SWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARL 414

Query: 330 -ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G  D V+VA+                                +I +Y  CGR++ 
Sbjct: 415 LARKDGFSDGVLVAA--------------------------------LINMYVKCGRLDL 442

Query: 389 AKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           +  IF++  + K+++ WN+MI    Q G    A+DL+  M +  L  D+ +L+S++SACA
Sbjct: 443 SSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACA 502

Query: 448 NISSLELGEQVFARVTIIGLDSDQ--IISTSLVDFYCKCGFIK 488
            +  LE GEQ+   + I   D  Q  ++  +L+  Y  CG I+
Sbjct: 503 ELQDLEKGEQLHVEI-IASRDCSQNPVVLNALISMYASCGEIR 544



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 135/508 (26%), Positives = 227/508 (44%), Gaps = 112/508 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H H +  G+ +    + + LLQMY +CG+  DA+ +F  +PRR+ FSWN +I  F 
Sbjct: 5   GRRIHAHIVASGLASDGF-LGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFA 63

Query: 84  KLGHKEKSLQLFNVM------PQKNDFS-------------------------------- 105
           K  H  K++++F  M      P     S                                
Sbjct: 64  KNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSII 123

Query: 106 -WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L+S +A+   L  AR +F+ +  ++ ++WN+MI    R G A +A++LFK +    
Sbjct: 124 VQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRME--- 180

Query: 165 VERLQCDAFILATVIGACADLA-ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
              L+ +    A+V  AC+ L    E GK+IH  I  + L+ +  + +++V +YGK G  
Sbjct: 181 ---LEPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKV 237

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A QV N ++  +                                V WN+M+  Y  NN
Sbjct: 238 GMARQVFNGIQHKN-------------------------------VVSWNAMLGAYTQNN 266

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
            D EAL ++H+M    V  D  T+   L   +SL  L+ G ++H  +   G   ++ V +
Sbjct: 267 LDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSNIKVQN 326

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+  Y K      A ++FS+++ +D +    +I  Y+                      
Sbjct: 327 ALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYT---------------------- 364

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
                    Q+G   EAL+L+  M    +  DK +  SV+SAC+N S LELG+ + AR+ 
Sbjct: 365 ---------QHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARL- 414

Query: 464 IIGLD--SDQIISTSLVDFYCKCGFIKM 489
           +   D  SD ++  +L++ Y KCG + +
Sbjct: 415 LARKDGFSDGVLVAALINMYVKCGRLDL 442



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 200/435 (45%), Gaps = 106/435 (24%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            VGK++H   ++   L + + +A  ++ MY + G    A  +F+ +  +N  SWNAM+  
Sbjct: 203 EVGKRIH-DRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGA 261

Query: 82  FMKLGHKEKSLQLFNVMP----QKNDFS-------------------------------- 105
           + +     ++L++++ M     Q+++ +                                
Sbjct: 262 YTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSN 321

Query: 106 ---WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
               N LIS + K  EL  AR +F+ +   + ++W ++I  Y ++G  REA+ L+K++  
Sbjct: 322 IKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEG 381

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCG 221
              E ++ D     +V+ AC++ + LE G+ +H+ +L     F D VL ++L+N+Y K  
Sbjct: 382 ---EGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKDGFSDGVLVAALINMYVK-- 436

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYI 280
                                        CG+++ +  +F    DT +V+ WN+MI+ Y 
Sbjct: 437 -----------------------------CGRLDLSSEIFQSCKDTKAVVVWNAMITAYE 467

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
                  A+ L+  M++ G+  D STL+S+LSAC+ L  LE G+Q+H     V +I    
Sbjct: 468 QEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLH-----VEII---- 518

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
                          S  C         + ++LN +I++Y+SCG I +AK +F+ M N+ 
Sbjct: 519 --------------ASRDCS-------QNPVVLNALISMYASCGEIREAKAVFKRMKNRD 557

Query: 401 LISWNSMIVGLSQNG 415
           ++SW  +I    Q G
Sbjct: 558 VVSWTILISAYVQGG 572



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 31/165 (18%)

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G+++H H    G+  D  +   LL  Y K                            
Sbjct: 2   LPQGRRIHAHIVASGLASDGFLGDHLLQMYGK---------------------------- 33

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              CG ++DA  +F ++P +SL SWN +I   ++N    +A+++F +M+   ++ D  +L
Sbjct: 34  ---CGSVDDAIQVFHSLPRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATL 90

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +SV+ AC+++  LE G+++ +R    GL S  I+  +LV  Y +C
Sbjct: 91  SSVLGACSSLRDLEEGKKIHSRALARGLSSSIIVQNALVSMYARC 135



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/199 (19%), Positives = 76/199 (38%), Gaps = 40/199 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D     L+ +L +C     +  G+QLH+  +     +    + N L+ MY  CG   +A
Sbjct: 487 LDPDESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYASCGEIREA 546

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLG------HKEKSLQLFNVMPQKNDF---------- 104
             +F  M  R+  SW  +I  +++ G         + + +  V P +  F          
Sbjct: 547 KAVFKRMKNRDVVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEPTFLCVFLACGHA 606

Query: 105 -----------------------SWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSM 140
                                   ++ +++  ++AG+L+ A  L + MP    ++ W S+
Sbjct: 607 GLVDECKWYFQSMIEDRITPTFDHYSCVVTVLSRAGKLEEAEDLLHSMPFNPGSVGWTSL 666

Query: 141 IHCYVRNGFAREAVRLFKE 159
           +     +G  + A R   E
Sbjct: 667 LGACRTHGDLKRARRAADE 685


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 146/533 (27%), Positives = 252/533 (47%), Gaps = 86/533 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D  + L   C    S+   + +H   L +G+ +        ++ MY+   +P  AL +  
Sbjct: 30  DLTSTLFHQCK---SLASAELIHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLR 82

Query: 66  EM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------- 100
            +       F WN +I   + LG  E  LQL+  M +                       
Sbjct: 83  RLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSF 142

Query: 101 -----------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNA---IAWNSMI 141
                       + F WN+     L+S + + G  + AR +F++M  R     ++WNS++
Sbjct: 143 RCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIV 202

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y++ G +  A+++F+ +  DL   ++ DA  L  V+ ACA + A   GKQ+H + L +
Sbjct: 203 AAYMQGGDSIRAMKMFERMTEDL--GIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL  D  +G+++V++Y KCG    AN+V   MK  D    +A+++GY+  G+ +DA  +F
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320

Query: 262 DRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           ++  +     + V W+++I+GY       EAL +F +MR  G   +  TL S+LS C+  
Sbjct: 321 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALA 380

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G L HGK+ H HA K  +  D                P D           D +++N +I
Sbjct: 381 GTLLHGKETHCHAIKWILNLD-------------ENDPGD-----------DLMVINALI 416

Query: 378 TVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LR 433
            +YS C   + A+ +F  +P K  S+++W  +I G +Q+G   EAL+LF  M + D  + 
Sbjct: 417 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 476

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
            + F+++  + ACA + +L  G Q+ A V     +S  + ++  L+D Y K G
Sbjct: 477 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSG 529



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/508 (24%), Positives = 221/508 (43%), Gaps = 94/508 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    S   G  +H      G   +   + N L+ MY RCG   +A  +FDEM  R
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVF-VGNGLVSMYGRCGAWENARQVFDEMRER 190

Query: 71  ---NCFSWNAMIEGFMK-----------------LGHKEKSLQLFNVMPQ---------- 100
              +  SWN+++  +M+                 LG +  ++ L NV+P           
Sbjct: 191 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 250

Query: 101 -------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                        ++ F  N ++  +AK G ++ A  +F  M  ++ ++WN+M+  Y + 
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   +A+ LF+++     E+++ +    + VI   A          +   + + G + + 
Sbjct: 311 GRFDDALGLFEKIRE---EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNV 367

Query: 208 VLGSSLVN--------LYGKCGDFNSANQVLNMMK-EPDD--FCLSALISGYANCGKMND 256
           V   SL++        L+GK    ++   +LN+ + +P D    ++ALI  Y+ C     
Sbjct: 368 VTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 427

Query: 257 ARRVFD--RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLS 312
           AR +FD     D S V W  +I G   + E  EAL LF +M +  N V+ +A T++  L 
Sbjct: 428 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 487

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           AC+ LG L  G+Q+H +  +      ++ VA+ L+D YSK                    
Sbjct: 488 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK-------------------- 527

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                       G ++ A+ +F  M  ++ +SW S++ G   +G   EAL +F  M K+ 
Sbjct: 528 -----------SGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVG 576

Query: 432 LRMDKFSLASVISACANISSLELGEQVF 459
           L  D  +   V+ AC++   ++ G   F
Sbjct: 577 LVPDGVTFVVVLYACSHSGMVDQGINYF 604



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 190/461 (41%), Gaps = 120/461 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG------------ 55
           L  +L +C +  +   GKQ+H + L+ G+      + N ++ MY +CG            
Sbjct: 234 LVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF-VGNAVVDMYAKCGMMEEANKVFERM 292

Query: 56  -------------------NPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSL 92
                                 DAL LF+++       N  +W+A+I G+ + G   ++L
Sbjct: 293 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 352

Query: 93  QLFNVM----PQKNDFSWNMLISGFAKAGEL----------------------------- 119
            +F  M     + N  +   L+SG A AG L                             
Sbjct: 353 DVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVI 412

Query: 120 -------------KTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKE-LNSD 163
                        K AR +F+ +P   R+ + W  +I    ++G A EA+ LF + L  D
Sbjct: 413 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 472

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               +  +AF ++  + ACA L AL +G+QIH+++L N                     F
Sbjct: 473 --NFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN--------------------RF 510

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            SA     M+     F  + LI  Y+  G ++ AR VFD     + V W S+++GY  + 
Sbjct: 511 ESA-----ML-----FVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHG 560

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVA 342
              EAL +F++M++ G++ D  T   VL ACS  G ++ G    +G     GV+      
Sbjct: 561 RGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHY 620

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           + ++D  S+ G   +A +L   + +  T  +   + + S+C
Sbjct: 621 ACMVDLLSRAGRLDEAMELIRGMPMKPTPAV--WVALLSAC 659



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 133/319 (41%), Gaps = 70/319 (21%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           + +T+   C  LA+ E    IH  +LV GL  D    + ++++Y     FNS  + L+++
Sbjct: 31  LTSTLFHQCKSLASAEL---IHQQLLVQGLPHDP---THIISMYLT---FNSPAKALSVL 81

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                                   RR+    +  +   WN +I   +      + L L+ 
Sbjct: 82  ------------------------RRL--HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYR 115

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M+R G   D  T   VL AC  +     G  VH           V+ AS          
Sbjct: 116 RMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA----------VVFASGF-------- 157

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVG 410
                         ++  + N ++++Y  CG  E+A+ +F  M  +    L+SWNS++  
Sbjct: 158 -------------EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 204

Query: 411 LSQNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
             Q G  I A+ +F  M + L +R D  SL +V+ ACA++ +   G+QV       GL  
Sbjct: 205 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 264

Query: 470 DQIISTSLVDFYCKCGFIK 488
           D  +  ++VD Y KCG ++
Sbjct: 265 DVFVGNAVVDMYAKCGMME 283



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 15/197 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++  G+Q+H + L+    ++ L +AN L+ MY + G+   A ++FD M +RN
Sbjct: 486 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             SW +++ G+   G  E++LQ+F  M +     +  ++ +++   + +G +      FN
Sbjct: 546 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFN 605

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +      +  M+    R G   EA+ L + +       ++    +   ++ AC
Sbjct: 606 GMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP------MKPTPAVWVALLSAC 659

Query: 183 ADLAALEYGKQIHSHIL 199
              A +E G+   + +L
Sbjct: 660 RVYANVELGEYAANQLL 676


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 243/522 (46%), Gaps = 97/522 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      + +GKQ+H H  K G    ++ +AN L+ +Y +CG+      +FD +  R
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           N  SWN++I         E +L+ F      NV P                         
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222

Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                     + N F  N L++ + K G+L +++ L      R+ + WN+++    +N  
Sbjct: 223 QVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 282

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSV 208
             EA+   +E+   ++E ++ D F +++V+ AC+ L  L  GK++H++ L NG LD +S 
Sbjct: 283 LLEALEYLREM---VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+LV++Y                                NC ++   RRVFD   D  
Sbjct: 340 VGSALVDMY-------------------------------CNCKQVLSGRRVFDGMFDRK 368

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVH 327
             +WN+MI+GY  N  D EALLLF  M  + G+L +++T+A V+ AC   G     + +H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   K G+  D  V + L+D YS+ G    A ++F +++  D +  NTMIT Y      E
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA  +   M N        +   +S+  S            ++ L+ +  +L +++ +CA
Sbjct: 489 DALLLLHKMQN--------LERKVSKGAS------------RVSLKPNSITLMTILPSCA 528

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            +S+L  G+++ A      L +D  + ++LVD Y KCG ++M
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQM 570



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 228/525 (43%), Gaps = 119/525 (22%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI--- 79
           +GKQ+H + L+KG LNS   I N L+ MY + G    + +L      R+  +WN ++   
Sbjct: 220 MGKQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277

Query: 80  ------------------EG-------------------FMKLGHKEKSLQLFNVMPQKN 102
                             EG                    ++ G +  +  L N    +N
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F  + L+  +    ++ + R +F+ M  R    WN+MI  Y +N   +EA+ LF  +  
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF--IGM 395

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           +    L  ++  +A V+ AC    A    + IH  ++  GLD D  + ++L+++Y + G 
Sbjct: 396 EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG- 454

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                         K++ A R+F +  D   V WN+MI+GY+ +
Sbjct: 455 ------------------------------KIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 283 NEDTEALLLFHKMR-----------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
               +ALLL HKM+           R  +  ++ TL ++L +C++L  L  GK++H +A 
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  +  DV V SAL+D Y+K                               CG ++ ++ 
Sbjct: 545 KNNLATDVAVGSALVDMYAK-------------------------------CGCLQMSRK 573

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  +P K++I+WN +I+    +G+  EA+DL   M    ++ ++ +  SV +AC++   
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           ++ G ++F  +    G++        +VD   + G IK + Y LM
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK-EAYQLM 677



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 167/358 (46%), Gaps = 71/358 (19%)

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+   W  ++   VR+   REAV  + ++   +V  ++ D +    ++ A ADL  +E G
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDM---IVLGIKPDNYAFPALLKAVADLQDMELG 116

Query: 192 KQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           KQIH+H+   G   DSV + ++LVNLY KCGDF +                         
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA------------------------- 151

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                   +VFDR ++ + V WNS+IS   S  +   AL  F  M    V   + TL SV
Sbjct: 152 ------VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205

Query: 311 LSACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ++ACS+L   E    GKQVH +  + G ++  I+                          
Sbjct: 206 VTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-------------------------- 239

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                 NT++ +Y   G++  +K +  +   + L++WN+++  L QN   +EAL+    M
Sbjct: 240 ------NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKC 484
               +  D+F+++SV+ AC+++  L  G+++ A     G LD +  + ++LVD YC C
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 83/369 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C+    +  GK+LH + LK G L+    + + L+ MY  C        +FD M
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMP----------- 99
             R    WNAMI G+ +  H +++L LF                  V+P           
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 100 ------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                        ++ F  N L+  +++ G++  A  +F  M  R+ + WN+MI  YV +
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 148 GFAREAVRLFKELNSDLVER----------LQCDAFILATVIGACADLAALEYGKQIHSH 197
               +A+ L  ++ +  +ER          L+ ++  L T++ +CA L+AL  GK+IH++
Sbjct: 485 EHHEDALLLLHKMQN--LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
            + N L  D  +GS+LV++Y KCG                             C +M  +
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCG-----------------------------CLQM--S 571

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R+VFD+    + + WN +I  Y  +    EA+ L   M   GV  +  T  SV +ACS  
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631

Query: 318 GFLEHGKQV 326
           G ++ G ++
Sbjct: 632 GMVDEGLRI 640



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 36/222 (16%)

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S   W  ++   + +N   EA+L +  M   G+  D     ++L A + L  +E GKQ+H
Sbjct: 61  SPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIH 120

Query: 328 GHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
            H  K G  +D V VA                               NT++ +Y  CG  
Sbjct: 121 AHVYKFGYGVDSVTVA-------------------------------NTLVNLYRKCGDF 149

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                +F  +  ++ +SWNS+I  L        AL+ F  M   ++    F+L SV++AC
Sbjct: 150 GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC 209

Query: 447 ANISSLE---LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +N+   E   +G+QV A     G  +  II+T LV  Y K G
Sbjct: 210 SNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLG 250



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 43/313 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    ++  GK++H + +K   L + + + + L+ MY +CG    +  +FD++
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNN-LATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P++N  +WN +I  +   G+ ++++ L  +M     + N+ ++  + +  + +G +    
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 124 TLFNDM-PRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILAT- 177
            +F  M P       +    C V    R G  +EA +L   +  D  +     + + A+ 
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698

Query: 178 -----VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
                 IG  A    ++    + SH ++            L N+Y   G ++ A +V   
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVL------------LANIYSSAGLWDKATEVRRN 746

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           MKE         +     C  +     V       SS   +  +SGY+          L+
Sbjct: 747 MKEQG-------VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLET--------LW 791

Query: 293 HKMRRNGVLEDAS 305
            +MR+ G + D S
Sbjct: 792 ERMRKEGYVPDTS 804


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 210/441 (47%), Gaps = 44/441 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N+ I    + G  +++  +FN MP KN  SW  L++ +A+  E+  AR +FN +P  N  
Sbjct: 51  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVA 110

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           ++N+MI  Y R     EA  LF  +        Q ++   AT+I         +  +++H
Sbjct: 111 SYNAMITAYHRRNMVDEAFELFSSMP-------QRNSVSYATMITGFVHAGMFDMAEKLH 163

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
               V       V  + L+N Y K G    A ++ + M E D    S++ISG    GK+ 
Sbjct: 164 REKPV------IVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIV 217

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +AR++FD+  D + V W  MI GY+  N   +  +LF  MRR GV  +A+TL  +L AC 
Sbjct: 218 EARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACG 277

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S      G Q+HG    +G   D  +A++++  YS+      A K F  +   D +  N+
Sbjct: 278 SFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNS 337

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD---- 431
           +IT Y   G +E A  +F  MP K ++SW ++I G +  G   E + LF  M + D    
Sbjct: 338 LITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAW 397

Query: 432 ---------------------------LRMDKFSLASVISACANISSLELGEQVFARVTI 464
                                      ++ + F+L+ V+SA A+++ L  G Q+ A VT 
Sbjct: 398 TAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTK 457

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
           + +++D  I  SLV  Y KCG
Sbjct: 458 MSMENDLSIQNSLVSMYSKCG 478



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 226/502 (45%), Gaps = 95/502 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM--------------------- 83
           N ++  Y R     +A  LF  MP+RN  S+  MI GF+                     
Sbjct: 113 NAMITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAGMFDMAEKLHREKPVIVSS 172

Query: 84  --------KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
                   K+G  E ++++F+ M +K+  SW+ +ISG  + G++  AR LF+ MP RN +
Sbjct: 173 NVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVV 232

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W  MI  Y++  F ++   LF  +  + VE    +A  L  ++ AC        G QIH
Sbjct: 233 TWTLMIDGYMKMNFLKDGFILFLNMRREGVE---VNATTLTVLLEACGSFDRYGEGIQIH 289

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             +L  G D D+ L +S++ +Y +C   ++A +  ++M + D    ++LI+GY   G + 
Sbjct: 290 GLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLE 349

Query: 256 DARRVFDR---------TT----------------------DTSSVMWNSMISGYISNNE 284
            A  +F+          TT                      +  ++ W ++ISG +S  E
Sbjct: 350 KAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEE 409

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              A   F KM ++ +  +A TL+ VLSA +S+  L  G Q+H    K+ + +D+ + ++
Sbjct: 410 YEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNS 469

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YSK G   DA K+F  +KV + +  NT+IT                          
Sbjct: 470 LVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIIT-------------------------- 503

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-T 463
                GL+QNG   EAL++F  M    L  +  +   V+SAC ++  +E G + F  + +
Sbjct: 504 -----GLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRS 558

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
           +  +  +      +VD  C+ G
Sbjct: 559 LYDIQPEPDHYACMVDLLCRAG 580



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 35/318 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL++C +      G Q+H   L  G  +    +AN ++ MY RC +   A   FD M
Sbjct: 269 LTVLLEACGSFDRYGEGIQIHGLVLSLG-FDVDAYLANSIITMYSRCYSIDAAAKQFDLM 327

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  +WN++I G+++ G+ EK++ LF  MPQK+  SW  LI GFA  G +     LF 
Sbjct: 328 VKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQ 387

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++AIAW ++I   V       A   F ++   L   ++ +AF L+ V+ A A +A 
Sbjct: 388 MMPEKDAIAWTAVISGLVSIEEYEIAFHWFIKM---LQSVIKPNAFTLSCVLSAGASMAI 444

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QIH+ +    ++ D  + +SLV++Y KCG+ + A ++   +K P+    + +I+G
Sbjct: 445 LNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITG 504

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A                                N    EAL +F KM+ + ++ +  T 
Sbjct: 505 LAQ-------------------------------NGLGKEALEIFTKMQDDYLVPNHITF 533

Query: 308 ASVLSACSSLGFLEHGKQ 325
             VLSAC  +G +E G++
Sbjct: 534 LGVLSACVHVGLVEEGRR 551



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 66/138 (47%), Gaps = 10/138 (7%)

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           + G   +A  +F+ +   +T+    ++T Y+    I  A+ +F  +P+ ++ S+N+MI  
Sbjct: 59  RNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITA 118

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
             +     EA +LF +M +     +  S A++I+   +    ++ E++     +I     
Sbjct: 119 YHRRNMVDEAFELFSSMPQ----RNSVSYATMITGFVHAGMFDMAEKLHREKPVI----- 169

Query: 471 QIISTSLVDFYCKCGFIK 488
            + S  L++ Y K G ++
Sbjct: 170 -VSSNVLINGYSKVGRVE 186


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/418 (30%), Positives = 231/418 (55%), Gaps = 12/418 (2%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+++ M+   +K G    + +LF+ MP+K+  S+  ++    K G +K A  L+   P  
Sbjct: 155 FTYDFMVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLY 214

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA-----DLAA 187
           +   + +MI  +VRN   ++A  +F+++   L   ++ +   L  VI AC      DLA 
Sbjct: 215 SVAFFTAMIAGFVRNELHKDAFPVFRKM---LRCSVRPNVVTLICVIKACVGAGEFDLAM 271

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
              G  I  ++    ++    + +SL+ LY + GD  +A++V + M+  D    +AL+  
Sbjct: 272 GVVGLAIKWNLFEKSIE----VHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDV 327

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA  G +  ARRV D   + + V W+++I+ +    +  EAL L+ +M   G   + S  
Sbjct: 328 YAELGDLEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCF 387

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +SVLSAC++L  L  G ++H +A K+G    + V+S+L+D Y K    +DA ++F+ L  
Sbjct: 388 SSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPE 447

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            +T+  N++I+ YS  G++ +A+ +F+ MP ++  SWN+MI G ++N    +AL+ FC M
Sbjct: 448 KNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAM 507

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                   + +L+SV+ ACAN+ SLE+G+ V A +  +G++ +  + T+L D Y K G
Sbjct: 508 LASGQIPGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSG 565



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 219/421 (52%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  ++++G    + ++F+ M  ++  SW  L+  +A+ G+L+ AR + + MP RN +
Sbjct: 291 NSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDAMPERNEV 350

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W+++I  + + G + EA++L+ ++   L E  + +    ++V+ ACA L  L  G +IH
Sbjct: 351 SWSTLIARHEQKGDSAEALKLYSQM---LAEGCRPNISCFSSVLSACATLHDLRGGTRIH 407

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++ L  G      + SSL+++Y KC     A ++ N + E +  C ++LISGY+  GKM 
Sbjct: 408 ANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWNGKMV 467

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F +    ++  WN+MISGY  N    +AL  F  M  +G +    TL+SVL AC+
Sbjct: 468 EAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGEITLSSVLLACA 527

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +L  LE GK VH    K+G+ D++ + +AL D Y+K                        
Sbjct: 528 NLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKS----------------------- 564

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ ++ +F  MP K+ I+W +M+ GL++NG   E++ LF NM    +  +
Sbjct: 565 --------GDLDSSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPN 616

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F  +   G+       T +VD   + G +   E  LM
Sbjct: 617 EHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKDKHYTCMVDVLARAGRLPEAEELLM 676

Query: 496 Q 496
           +
Sbjct: 677 K 677



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 182/420 (43%), Gaps = 101/420 (24%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T H +  G ++H + LK G  +S   +++ L+ MY +C   TDA    
Sbjct: 384 ISCFSSVLSACATLHDLRGGTRIHANALKMGFSSSLF-VSSSLIDMYCKCKQCTDAQ--- 439

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
                                       ++FN +P+KN   WN LISG++  G++  A  
Sbjct: 440 ----------------------------RIFNSLPEKNTVCWNSLISGYSWNGKMVEAEE 471

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RNA +WN+MI  Y  N    +A+  F  +   L          L++V+ ACA+
Sbjct: 472 LFKKMPARNAASWNTMISGYAENRRFGDALNYFCAM---LASGQIPGEITLSSVLLACAN 528

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +LE GK +H+ I+  G++ +  +G++L ++Y K GD                      
Sbjct: 529 LCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGD---------------------- 566

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                    ++ +RR+F +  + +++ W +M+ G   N    E++LLF  M  N +  + 
Sbjct: 567 ---------LDSSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNE 617

Query: 305 STLASVLSACSSLGFLEHG------KQVHG-------HACKVGVID-------------- 337
            T  ++L ACS  G +E         Q HG       + C V V+               
Sbjct: 618 HTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKDKHYTCMVDVLARAGRLPEAEELLMK 677

Query: 338 -----DVIVASALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                D    S+LL   +TY  + +   A K   EL+  +T     +  +Y+SCG+ +DA
Sbjct: 678 VPSKLDTSSWSSLLSACNTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDA 737



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 110/239 (46%), Gaps = 20/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C    S+ +GK +H   +K GI ++   +   L  MY + G+   +  +F +M
Sbjct: 519 LSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIF-MGTALSDMYAKSGDLDSSRRMFYQM 577

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P +N  +W AM++G  + G  E+S+ LF  M       N+ ++  ++   +  G ++ A 
Sbjct: 578 PEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQAI 637

Query: 124 TLFNDM-----PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     P ++   +  M+    R G   EA  L  ++ S L      D    +++
Sbjct: 638 HYFETMQAHGIPPKDK-HYTCMVDVLARAGRLPEAEELLMKVPSKL------DTSSWSSL 690

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKEP 236
           + AC      E G++    +  + L+ D+  G  L+ N+Y  CG +  A +   +M+ P
Sbjct: 691 LSACNTYRNKEIGERAAKKL--HELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGP 747



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 21/111 (18%)

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRG------------MPSDACKLFSELKVYDTILL 373
           +H H  + G+  D  VAS LL  Y+               + +DA   F+    YD    
Sbjct: 107 LHAHTLRSGLAADRSVASNLLTAYAAFARAADRDRAFRDCVSADAASSFT----YD---- 158

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
             M++ +   G I  A+ +F  MP KS++S+ +M+  L + GS  +A+ L+
Sbjct: 159 -FMVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLY 208


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 243/522 (46%), Gaps = 97/522 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++      + +GKQ+H H  K G    ++ +AN L+ +Y +CG+      +FD +  R
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           N  SWN++I         E +L+ F      NV P                         
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222

Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                     + N F  N L++ + K G+L +++ L      R+ + WN+++    +N  
Sbjct: 223 QVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 282

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSV 208
             EA+   +E+   ++E ++ D F +++V+ AC+ L  L  GK++H++ L NG LD +S 
Sbjct: 283 LLEALEYLREM---VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+LV++Y                                NC ++   RRVFD   D  
Sbjct: 340 VGSALVDMY-------------------------------CNCKQVLSGRRVFDGMFDRK 368

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVH 327
             +WN+MI+GY  N  D EALLLF  M  + G+L +++T+A V+ AC   G     + +H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   K G+  D  V + L+D YS+ G    A ++F +++  D +  NTMIT Y      E
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA  +   M N        +   +S+  S            ++ L+ +  +L +++ +CA
Sbjct: 489 DALLLLHKMQN--------LERKVSKGAS------------RVSLKPNSITLMTILPSCA 528

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            +S+L  G+++ A      L +D  + ++LVD Y KCG ++M
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQM 570



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 228/525 (43%), Gaps = 119/525 (22%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI--- 79
           +GKQ+H + L+KG LNS   I N L+ MY + G    + +L      R+  +WN ++   
Sbjct: 220 MGKQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277

Query: 80  ------------------EG-------------------FMKLGHKEKSLQLFNVMPQKN 102
                             EG                    ++ G +  +  L N    +N
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F  + L+  +    ++ + R +F+ M  R    WN+MI  Y +N   +EA+ LF  +  
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF--IGM 395

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           +    L  ++  +A V+ AC    A    + IH  ++  GLD D  + ++L+++Y + G 
Sbjct: 396 EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG- 454

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                         K++ A R+F +  D   V WN+MI+GY+ +
Sbjct: 455 ------------------------------KIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 283 NEDTEALLLFHKMR-----------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
               +ALLL HKM+           R  +  ++ TL ++L +C++L  L  GK++H +A 
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  +  DV V SAL+D Y+K                               CG ++ ++ 
Sbjct: 545 KNNLATDVAVGSALVDMYAK-------------------------------CGCLQMSRK 573

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  +P K++I+WN +I+    +G+  EA+DL   M    ++ ++ +  SV +AC++   
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           ++ G ++F  +    G++        +VD   + G IK + Y LM
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK-EAYQLM 677



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 167/358 (46%), Gaps = 71/358 (19%)

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+   W  ++   VR+   REAV  + ++   +V  ++ D +    ++ A ADL  +E G
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDM---IVLGIKPDNYAFPALLKAVADLQDMELG 116

Query: 192 KQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           KQIH+H+   G   DSV + ++LVNLY KCGDF +                         
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA------------------------- 151

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                   +VFDR ++ + V WNS+IS   S  +   AL  F  M    V   + TL SV
Sbjct: 152 ------VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205

Query: 311 LSACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ++ACS+L   E    GKQVH +  + G ++  I+                          
Sbjct: 206 VTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-------------------------- 239

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                 NT++ +Y   G++  +K +  +   + L++WN+++  L QN   +EAL+    M
Sbjct: 240 ------NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKC 484
               +  D+F+++SV+ AC+++  L  G+++ A     G LD +  + ++LVD YC C
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 83/369 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C+    +  GK+LH + LK G L+    + + L+ MY  C        +FD M
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMP----------- 99
             R    WNAMI G+ +  H +++L LF                  V+P           
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 100 ------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                        ++ F  N L+  +++ G++  A  +F  M  R+ + WN+MI  YV +
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 148 GFAREAVRLFKELNSDLVER----------LQCDAFILATVIGACADLAALEYGKQIHSH 197
               +A+ L  ++ +  +ER          L+ ++  L T++ +CA L+AL  GK+IH++
Sbjct: 485 EHHEDALLLLHKMQN--LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
            + N L  D  +GS+LV++Y KCG                             C +M  +
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCG-----------------------------CLQM--S 571

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R+VFD+    + + WN +I  Y  +    EA+ L   M   GV  +  T  SV +ACS  
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631

Query: 318 GFLEHGKQV 326
           G ++ G ++
Sbjct: 632 GMVDEGLRI 640



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 36/222 (16%)

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S   W  ++   + +N   EA+L +  M   G+  D     ++L A + L  +E GKQ+H
Sbjct: 61  SPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIH 120

Query: 328 GHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
            H  K G  +D V VA                               NT++ +Y  CG  
Sbjct: 121 AHVYKFGYGVDSVTVA-------------------------------NTLVNLYRKCGDF 149

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                +F  +  ++ +SWNS+I  L        AL+ F  M   ++    F+L SV++AC
Sbjct: 150 GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC 209

Query: 447 ANISSLE---LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +N+   E   +G+QV A     G  +  II+T LV  Y K G
Sbjct: 210 SNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLG 250



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 43/313 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC    ++  GK++H + +K   L + + + + L+ MY +CG    +  +FD++
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNN-LATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P++N  +WN +I  +   G+ ++++ L  +M     + N+ ++  + +  + +G +    
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 124 TLFNDM-PRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILAT- 177
            +F  M P       +    C V    R G  +EA +L   +  D  +     + + A+ 
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698

Query: 178 -----VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
                 IG  A    ++    + SH ++            L N+Y   G ++ A +V   
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVL------------LANIYSSAGLWDKATEVRRN 746

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           MKE         +     C  +     V       SS   +  +SGY+          L+
Sbjct: 747 MKEQG-------VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLET--------LW 791

Query: 293 HKMRRNGVLEDAS 305
            +MR+ G + D S
Sbjct: 792 ERMRKEGYVPDTS 804


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 253/480 (52%), Gaps = 41/480 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L ++LQ+C        GK +H   ++ G +N  + ++N +L +Y +CG  + A   F+ M
Sbjct: 188 LPKILQACGNCGDAETGKLIHSLVIRCG-MNFNIRVSNSILAVYAKCGRLSCARRFFENM 246

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKTAR 123
             R+  SWN++I G+ + G  EKS QLF  M ++       +WN+LI+ ++++G+   A 
Sbjct: 247 DYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAM 306

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            L   M       +   W SMI  + +N    +A+ LF+E+   L+  ++ +   + + I
Sbjct: 307 ELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREM---LLAGIEPNGVTVTSGI 363

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA L AL+ G ++HS  +  G   D ++G+SL+++Y K G+   A +V +M+ + D +
Sbjct: 364 SACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVY 423

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKM 295
             +++I GY   G    A  +F +  ++    + V WN+MISGYI N ++ +A+ LFH+M
Sbjct: 424 TWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRM 483

Query: 296 RRNGVLE-DASTLASVLSACSSLGFLEHG---------KQVHGHACKVGVIDDVIVASAL 345
            ++G+++ D ++  S+++     G+L++G         +Q+     +   +  + +  A 
Sbjct: 484 EKDGLIKRDTASWNSLIA-----GYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPAC 538

Query: 346 LD-TYSKRGMPSDAC----KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
            +   +K+      C     L SEL V      N +I  Y+  G I  A+ IF+ + +K 
Sbjct: 539 ANLVAAKKVKEIHGCILRRNLGSELSV-----ANCLIDTYAKSGNIVYAQTIFQGISSKD 593

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           +ISWNS+I G   +G    ALDLF  M K+ ++  + +  S+I A +    ++ G+QVF+
Sbjct: 594 IISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFS 653



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 225/487 (46%), Gaps = 84/487 (17%)

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           +G  +LG K  +     ++ + N F    L+S +AK G L  AR +F +M  RN  AW++
Sbjct: 98  QGSAELGRKLHAR--IGLLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSA 155

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           MI  Y R    RE V+ F  +  D +     D F+L  ++ AC +    E GK IHS ++
Sbjct: 156 MIGAYSREQMWREVVQHFFFMMEDGIVP---DEFLLPKILQACGNCGDAETGKLIHSLVI 212

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             G++F+  + +S++ +Y KCG  + A +    M   D    +++I+GY   G++  + +
Sbjct: 213 RCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQ 272

Query: 260 VFDRTT-------------------------DTSSVM--------------WNSMISGYI 280
           +F++                           D   +M              W SMISG+ 
Sbjct: 273 LFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFA 332

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            NN  ++AL LF +M   G+  +  T+ S +SAC+SL  L+ G ++H  A K+G ++D++
Sbjct: 333 QNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLL 392

Query: 341 VASALLDTYSKRGMPSDACKLFSEL----------------------KVYD--------- 369
           V ++L+D YSK G   DA ++F  +                      K YD         
Sbjct: 393 VGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESD 452

Query: 370 ----TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI-----SWNSMIVGLSQNGSPIEA 420
                +  N MI+ Y   G  + A  +F  M    LI     SWNS+I G  QNG   +A
Sbjct: 453 VPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKA 512

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L +F  M    +R +  ++ S++ ACAN+ + +  +++   +    L S+  ++  L+D 
Sbjct: 513 LGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDT 572

Query: 481 YCKCGFI 487
           Y K G I
Sbjct: 573 YAKSGNI 579


>gi|242075864|ref|XP_002447868.1| hypothetical protein SORBIDRAFT_06g017180 [Sorghum bicolor]
 gi|241939051|gb|EES12196.1| hypothetical protein SORBIDRAFT_06g017180 [Sorghum bicolor]
          Length = 714

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 230/481 (47%), Gaps = 76/481 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVM 98
           NR ++    CG+  DA  +FD MPRR+  SWNA+I    + GH  ++  LF       + 
Sbjct: 90  NRAIESLAACGSLADAREMFDAMPRRDGGSWNAIISASSRAGHPAEAFSLFAGMNSLGIR 149

Query: 99  PQ----------------------------KNDFSWNM-----LISGFAKAGELKTARTL 125
           P+                            K DF  N+     L+  + K   L  AR  
Sbjct: 150 PKDVTLASVLACCAECLDLRGAQQLHGHIAKRDFQSNVILGTALVDVYGKCLLLTDARRA 209

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+D+ + N I+WN +I  Y+  G    AV +F  +    +  L    + +   + AC D 
Sbjct: 210 FDDILQPNDISWNVIIRRYLLAGMGDMAVHMFFRMVWAGIRPL---VYTVTHAMLACRDN 266

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            AL+ G+ IH+ +L +G +    + SS+V++Y KCGD ++A ++ N+  + D    ++++
Sbjct: 267 GALKEGRCIHTFVLRHGYEHHVHVRSSVVDMYAKCGDIDAALRLFNLAPKKDVVTSTSVV 326

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           SG A CG++ DA+RVFD     + V WN+M++G + + + T AL LF +MR      D  
Sbjct: 327 SGLAACGRIADAKRVFDGMEQHNLVSWNAMLTGCVKSMDLTGALDLFQQMRHETKELDVV 386

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TL SVL+AC+ L  L  G+++H  A K                          C LFS  
Sbjct: 387 TLGSVLNACTGLLDLGKGEELHALALK--------------------------CGLFSY- 419

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHI--FRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                 L+N ++ +YS CG + +A+ +  F     +   SWNS+I G  ++     AL  
Sbjct: 420 ----PFLMNALVRLYSKCGCLRNAERLLLFEMGSERERFSWNSLISGYERHSMSEAALHA 475

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
              M   + +  + + +S ++ACANI  L  G+Q+ A +   G D D I+ ++LVD Y K
Sbjct: 476 LREMQS-EAKPSQSTFSSALAACANIFLLNHGKQIHAYMIRNGYDIDDILRSALVDMYSK 534

Query: 484 C 484
           C
Sbjct: 535 C 535



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 183/392 (46%), Gaps = 34/392 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F +N  I   A  G L  AR +F+ MPRR+  +WN++I    R G   EA  LF  +NS 
Sbjct: 87  FLFNRAIESLAACGSLADAREMFDAMPRRDGGSWNAIISASSRAGHPAEAFSLFAGMNS- 145

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               ++     LA+V+  CA+   L   +Q+H HI       + +LG++LV++YGKC   
Sbjct: 146 --LGIRPKDVTLASVLACCAECLDLRGAQQLHGHIAKRDFQSNVILGTALVDVYGKCLLL 203

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A                               RR FD     + + WN +I  Y+   
Sbjct: 204 TDA-------------------------------RRAFDDILQPNDISWNVIIRRYLLAG 232

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
               A+ +F +M   G+     T+   + AC   G L+ G+ +H    + G    V V S
Sbjct: 233 MGDMAVHMFFRMVWAGIRPLVYTVTHAMLACRDNGALKEGRCIHTFVLRHGYEHHVHVRS 292

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +++D Y+K G    A +LF+     D +   ++++  ++CGRI DAK +F  M   +L+S
Sbjct: 293 SVVDMYAKCGDIDAALRLFNLAPKKDVVTSTSVVSGLAACGRIADAKRVFDGMEQHNLVS 352

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+M+ G  ++     ALDLF  M      +D  +L SV++AC  +  L  GE++ A   
Sbjct: 353 WNAMLTGCVKSMDLTGALDLFQQMRHETKELDVVTLGSVLNACTGLLDLGKGEELHALAL 412

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
             GL S   +  +LV  Y KCG ++  E  L+
Sbjct: 413 KCGLFSYPFLMNALVRLYSKCGCLRNAERLLL 444



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 179/390 (45%), Gaps = 68/390 (17%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           +++++ + K G  + +L+LFN+ P+K+  +   ++SG A  G +  A+ +F+ M + N +
Sbjct: 292 SSVVDMYAKCGDIDAALRLFNLAPKKDVVTSTSVVSGLAACGRIADAKRVFDGMEQHNLV 351

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+M+   V++     A+ LF+++     E  + D   L +V+ AC  L  L  G+++H
Sbjct: 352 SWNAMLTGCVKSMDLTGALDLFQQMRH---ETKELDVVTLGSVLNACTGLLDLGKGEELH 408

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L                   KCG F+              F ++AL+  Y+ CG + 
Sbjct: 409 ALAL-------------------KCGLFSYP------------FLMNALVRLYSKCGCLR 437

Query: 256 DARRV--FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           +A R+  F+  ++     WNS+ISGY  ++    AL    +M+        ST +S L+A
Sbjct: 438 NAERLLLFEMGSERERFSWNSLISGYERHSMSEAALHALREMQSEAK-PSQSTFSSALAA 496

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+++  L HGKQ+H +  + G   D I+ SAL+D YSK       C LF           
Sbjct: 497 CANIFLLNHGKQIHAYMIRNGYDIDDILRSALVDMYSK-------CSLFD---------- 539

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                 YSS         IF    +  +I WNSMI   + N      L+LF  M K  +R
Sbjct: 540 ------YSS--------RIFELGLSNDVILWNSMIFACAYNSKGDYGLELFDEMRKQGIR 585

Query: 434 MDKFSLASVISACANISSLELGEQVFARVT 463
            D  +    + +C     + LG   F  +T
Sbjct: 586 PDSVTFLGALVSCICEGHVGLGRSYFTLMT 615



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 81/333 (24%)

Query: 33  KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG----------- 81
           KK ++ ST  ++         CG   DA  +FD M + N  SWNAM+ G           
Sbjct: 316 KKDVVTSTSVVSG-----LAACGRIADAKRVFDGMEQHNLVSWNAMLTGCVKSMDLTGAL 370

Query: 82  --FMKLGHKEKSLQLFNVMPQKN--------------------------DFSWNMLISGF 113
             F ++ H+ K L +  +    N                           F  N L+  +
Sbjct: 371 DLFQQMRHETKELDVVTLGSVLNACTGLLDLGKGEELHALALKCGLFSYPFLMNALVRLY 430

Query: 114 AKAGELKTARTL--FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           +K G L+ A  L  F     R   +WNS+I  Y R+  +  A+   +E+ S+     +  
Sbjct: 431 SKCGCLRNAERLLLFEMGSERERFSWNSLISGYERHSMSEAALHALREMQSEA----KPS 486

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
               ++ + ACA++  L +GKQIH++++ NG D D +L S+LV++Y KC  F+ ++++  
Sbjct: 487 QSTFSSALAACANIFLLNHGKQIHAYMIRNGYDIDDILRSALVDMYSKCSLFDYSSRIFE 546

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
           +                   G  ND             ++WNSMI     N++    L L
Sbjct: 547 L-------------------GLSNDV------------ILWNSMIFACAYNSKGDYGLEL 575

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           F +MR+ G+  D+ T    L +C   G +  G+
Sbjct: 576 FDEMRKQGIRPDSVTFLGALVSCICEGHVGLGR 608



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 62/115 (53%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T L N  I   ++CG + DA+ +F  MP +   SWN++I   S+ G P EA  LF  MN 
Sbjct: 86  TFLFNRAIESLAACGSLADAREMFDAMPRRDGGSWNAIISASSRAGHPAEAFSLFAGMNS 145

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           L +R    +LASV++ CA    L   +Q+   +      S+ I+ T+LVD Y KC
Sbjct: 146 LGIRPKDVTLASVLACCAECLDLRGAQQLHGHIAKRDFQSNVILGTALVDVYGKC 200


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 138/472 (29%), Positives = 246/472 (52%), Gaps = 26/472 (5%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC--------FSWNAM 78
           LH H  + G L +   +A+ LL  Y       D    F     R+C        F+++ M
Sbjct: 102 LHAHAFRSG-LTADRSVASNLLTAYAAFTRAADRDQAF-----RDCVAADAASSFTYDFM 155

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
           +   +K G    + +LF  MP+K+  S+  ++    K G ++ A  L+   P  +   + 
Sbjct: 156 VSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFT 215

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA-----DLAALEYGKQ 193
           +MI  +VRN   ++A  +F+++   L   ++ +   L  VI AC      DLA    G  
Sbjct: 216 AMISGFVRNELHKDAFPVFRKM---LTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLA 272

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +  ++    ++    + +SL+ LY + GD  +A++V + M+  D    +AL+  YA+ G 
Sbjct: 273 VKCNLFEKSIE----VHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGD 328

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           +  ARRV D     + V W ++I+ +    +  EAL L+ +M  +G   + S  +SVLSA
Sbjct: 329 LYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSA 388

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C++L  L  G ++H +A K+G   ++ V+S+L+D Y K    + A ++F+ L   +T+  
Sbjct: 389 CATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCW 448

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N++I+ YS  G++ +A+ +F  MP ++ +SWN+MI G ++N    +AL+ F  M      
Sbjct: 449 NSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI 508

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             + +L+SV+ ACAN+ SLE+G  V A +  +G++ +  + T+L D Y K G
Sbjct: 509 PGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSG 560



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 220/421 (52%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  ++++G    + ++F+ M  ++  SW  L+  +A  G+L  AR + + MP RN +
Sbjct: 286 NSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEV 345

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W ++I  + + G   EA++L+ ++   L +  + +    ++V+ ACA L  L  G +IH
Sbjct: 346 SWGTLIARHEQKGDTAEALKLYSQM---LADGCRPNISCFSSVLSACATLQDLRGGTRIH 402

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++ L  G   +  + SSL+++Y KC     A +V N + E +  C ++LISGY+  GKM 
Sbjct: 403 ANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMV 462

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F++    +SV WN+MISGY  N    +AL  F+ M  +G +    TL+SVL AC+
Sbjct: 463 EAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACA 522

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +L  LE G+ VH    K+G+ D++ + +AL D Y+K                        
Sbjct: 523 NLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKS----------------------- 559

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ ++ +F  MP K+ I+W +M+ GL++NG   E++ LF +M +  +  +
Sbjct: 560 --------GDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPN 611

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F  +   G+       T +VD   + G +   E  LM
Sbjct: 612 EHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLM 671

Query: 496 Q 496
           +
Sbjct: 672 K 672



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 183/432 (42%), Gaps = 101/432 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H + LK G  ++ L +++ L+ MY +C   T A    
Sbjct: 379 ISCFSSVLSACATLQDLRGGTRIHANALKMGS-STNLFVSSSLIDMYCKCKQCTYAQ--- 434

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
                                       ++FN +P+KN   WN LISG++  G++  A  
Sbjct: 435 ----------------------------RVFNSLPEKNTVCWNSLISGYSWNGKMVEAEG 466

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LFN MP RN+++WN+MI  Y  N    +A+  F  +   L          L++V+ ACA+
Sbjct: 467 LFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAM---LASGHIPGEITLSSVLLACAN 523

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +LE G+ +H+ I+  G++ +  +G++L ++Y K GD +S+ +V   M E ++   +A+
Sbjct: 524 LCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAM 583

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           + G A                                N    E++ LF  M  NG+  + 
Sbjct: 584 VQGLAE-------------------------------NGFAEESISLFEDMIENGIAPNE 612

Query: 305 STLASVLSACSSLGFLEHG------KQVHG-------HACKVGVID-------------- 337
            T  ++L ACS  G +E         Q HG       + C V V+               
Sbjct: 613 HTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMK 672

Query: 338 -----DVIVASALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                D    S+LL    TY  + +   A K   EL+  +T     +  +Y+SCG+ +DA
Sbjct: 673 VSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDA 732

Query: 390 KHIFRTMPNKSL 401
                 M   SL
Sbjct: 733 AETRILMQGASL 744



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
           ++T  ++ S   S G L     +H HA + G+  D  VAS LL  Y+     +D  + F 
Sbjct: 80  SATSTTMPSYAPSSGCLPLVLSLHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFR 139

Query: 364 ELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +    D   +   + M++ +   G I  A+ +F  MP KS++S+ +M+  L + GS  +A
Sbjct: 140 DCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDA 199

Query: 421 LDLF 424
           ++L+
Sbjct: 200 VELY 203


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 210/441 (47%), Gaps = 44/441 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N+ I    + G  +++  +FN MP KN  SW  L++ +A+  E+  AR +FN +P  N  
Sbjct: 59  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVA 118

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           ++N+MI  Y R     EA  LF  +        Q ++   AT+I         +  +++H
Sbjct: 119 SYNAMITAYHRRNMVDEAFELFSSMP-------QRNSVSYATMITGFVHAGMFDMAEKLH 171

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
               V       V  + L+N Y K G    A ++ + M E D    S++ISG    GK+ 
Sbjct: 172 REKPV------IVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIV 225

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +AR++FD+  D + V W  MI GY+  N   +  +LF  MRR GV  +A+TL  +L AC 
Sbjct: 226 EARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACG 285

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S      G Q+HG    +G   D  +A++++  YS+      A K F  +   D +  N+
Sbjct: 286 SFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNS 345

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD---- 431
           +IT Y   G +E A  +F  MP K ++SW ++I G +  G   E + LF  M + D    
Sbjct: 346 LITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAW 405

Query: 432 ---------------------------LRMDKFSLASVISACANISSLELGEQVFARVTI 464
                                      ++ + F+L+ V+SA A+++ L  G Q+ A VT 
Sbjct: 406 TAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTK 465

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
           + +++D  I  SLV  Y KCG
Sbjct: 466 MSMENDLSIQNSLVSMYSKCG 486



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 226/502 (45%), Gaps = 95/502 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM--------------------- 83
           N ++  Y R     +A  LF  MP+RN  S+  MI GF+                     
Sbjct: 121 NAMITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAGMFDMAEKLHREKPVIVSS 180

Query: 84  --------KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
                   K+G  E ++++F+ M +K+  SW+ +ISG  + G++  AR LF+ MP RN +
Sbjct: 181 NVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVV 240

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W  MI  Y++  F ++   LF  +  + VE    +A  L  ++ AC        G QIH
Sbjct: 241 TWTLMIDGYMKMNFLKDGFILFLNMRREGVE---VNATTLTVLLEACGSFDRYGEGIQIH 297

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             +L  G D D+ L +S++ +Y +C   ++A +  ++M + D    ++LI+GY   G + 
Sbjct: 298 GLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLE 357

Query: 256 DARRVFDR---------TT----------------------DTSSVMWNSMISGYISNNE 284
            A  +F+          TT                      +  ++ W ++ISG +S  E
Sbjct: 358 KAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEE 417

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              A   F KM ++ +  +A TL+ VLSA +S+  L  G Q+H    K+ + +D+ + ++
Sbjct: 418 YEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNS 477

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YSK G   DA K+F  +KV + +  NT+IT                          
Sbjct: 478 LVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIIT-------------------------- 511

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-T 463
                GL+QNG   EAL++F  M    L  +  +   V+SAC ++  +E G + F  + +
Sbjct: 512 -----GLAQNGLGKEALEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRS 566

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
           +  +  +      +VD  C+ G
Sbjct: 567 LYDIQPEPDHYACMVDLLCRAG 588



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 35/318 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL++C +      G Q+H   L  G  +    +AN ++ MY RC +   A   FD M
Sbjct: 277 LTVLLEACGSFDRYGEGIQIHGLVLSLG-FDVDAYLANSIITMYSRCYSIDAAAKQFDLM 335

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  +WN++I G+++ G+ EK++ LF  MPQK+  SW  LI GFA  G +     LF 
Sbjct: 336 VKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQ 395

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++AIAW ++I   V       A   F ++   L   ++ +AF L+ V+ A A +A 
Sbjct: 396 MMPEKDAIAWTAVISGLVSIEEYEIAFHWFIKM---LQSVIKPNAFTLSCVLSAGASMAI 452

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QIH+ +    ++ D  + +SLV++Y KCG+ + A ++   +K P+    + +I+G
Sbjct: 453 LNQGLQIHAIVTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITG 512

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A                                N    EAL +F KM+ + ++ +  T 
Sbjct: 513 LAQ-------------------------------NGLGKEALEIFTKMQDDYLVPNHITF 541

Query: 308 ASVLSACSSLGFLEHGKQ 325
             VLSAC  +G +E G++
Sbjct: 542 LGVLSACVHVGLVEEGRR 559



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 83/204 (40%), Gaps = 44/204 (21%)

Query: 319 FLEHGKQVHGHAC-------------------------KVGVIDD---------VIVASA 344
           F EH  Q++GH C                         K G  D          ++  ++
Sbjct: 1   FWEHDSQINGHLCLQAIAHVYPFEFQAFFFNFSTQILSKRGNFDSATRQKSSKFLVYCNS 60

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
            +    + G   +A  +F+ +   +T+    ++T Y+    I  A+ +F  +P+ ++ S+
Sbjct: 61  QITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASY 120

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N+MI    +     EA +LF +M +     +  S A++I+   +    ++ E++     +
Sbjct: 121 NAMITAYHRRNMVDEAFELFSSMPQ----RNSVSYATMITGFVHAGMFDMAEKLHREKPV 176

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
           I      + S  L++ Y K G ++
Sbjct: 177 I------VSSNVLINGYSKVGRVE 194


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 214/422 (50%), Gaps = 41/422 (9%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N ++  + +LG    + ++F+ MP +N FS+N L+S  A+ G    A  LF  +P  
Sbjct: 51  FLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDP 110

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +  ++N+++    ++G   +A+R    +++D       +A+  A+ + ACA   A   G+
Sbjct: 111 DQCSYNAVVAALAQHGRGGDALRFLAAMHAD---DFVLNAYSFASALSACASEKASRTGE 167

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H+ +  +    D  +G++LV++Y K                               C 
Sbjct: 168 QVHALVTKSSHGSDVYIGTALVDMYAK-------------------------------CE 196

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           +  +A++VFD   + + V WNS+I+ Y  N    EAL LF +M ++G + D  TLASV+S
Sbjct: 197 RPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMS 256

Query: 313 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           AC+ L     G+QVH    K     +D+++ +AL+D Y+K G   +A  +F  + +   +
Sbjct: 257 ACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVV 316

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              +MIT Y+    + DA+ +F  M  K++++WN +I   + N    EAL LF  + +  
Sbjct: 317 SETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRES 376

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCKCG 485
           +    ++  +V++ACAN+++L+LG+Q    V   G       +SD  +  SLVD Y K G
Sbjct: 377 VWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTG 436

Query: 486 FI 487
            I
Sbjct: 437 SI 438



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 220/492 (44%), Gaps = 83/492 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL    R G   DAL LF  +P  +  S+NA++    + G    +L+    M   +DF
Sbjct: 85  NALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAM-HADDF 143

Query: 105 SWNM----------------------------------------LISGFAKAGELKTART 124
             N                                         L+  +AK    + A+ 
Sbjct: 144 VLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQK 203

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ MP RN ++WNS+I CY +NG   EA+ LF  +  D       D   LA+V+ ACA 
Sbjct: 204 VFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKD---GFVPDEVTLASVMSACAG 260

Query: 185 LAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           LAA   G+Q+H+ ++  +    D VL ++LV++Y KCG    A  V + M        ++
Sbjct: 261 LAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETS 320

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I+GYA    + DA+ VF +  + + V WN +I+ Y  N+E+ EAL LF +++R  V   
Sbjct: 321 MITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPT 380

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI------DDVIVASALLDTYSKRGMPSD 357
             T  +VL+AC++L  L+ G+Q H H  K G         DV V ++L+D Y K G  SD
Sbjct: 381 HYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISD 440

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
             K+F  +   D +  N MI  Y+  GR +DA  +F  M              L  N  P
Sbjct: 441 GAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERM--------------LCSNERP 486

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTS 476
                            D  ++  V+SAC +   ++ G + F  +T   G+   +   T 
Sbjct: 487 -----------------DSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTC 529

Query: 477 LVDFYCKCGFIK 488
           ++D   + G +K
Sbjct: 530 MIDLLGRAGHLK 541



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 131/281 (46%), Gaps = 32/281 (11%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           ++ L ++L++ Y + G  + A +V + M   + F  +AL+S  A  G+ +DA  +F    
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           D     +N++++    +    +AL     M  +  + +A + AS LSAC+S      G+Q
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQ 168

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH    K     DV + +AL+D Y+K   P +A K+F  +   + +  N++IT Y     
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCY----- 223

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                                      QNG   EAL LF  M K     D+ +LASV+SA
Sbjct: 224 --------------------------EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSA 257

Query: 446 CANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCG 485
           CA +++   G QV  R V       D +++ +LVD Y KCG
Sbjct: 258 CAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCG 298



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 137/324 (42%), Gaps = 71/324 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C    +   G+Q+H   +K       + + N L+ MY +CG   +A  +FD M
Sbjct: 251 LASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  S  +MI G+ K  +   +  +F  M +KN  +WN+LI+                
Sbjct: 311 AIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIA---------------- 354

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                           Y  N    EA+RLF  L  + V       +    V+ ACA+LA 
Sbjct: 355 ---------------TYAHNSEEEEALRLFVRLKRESVWPTH---YTYGNVLNACANLAN 396

Query: 188 LEYGKQIHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           L+ G+Q H H+L  G  FDS       +G+SLV++Y K G  +   +V   M   D+   
Sbjct: 397 LQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSW 456

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +A+I GYA  G+  D                               ALLLF +M  +   
Sbjct: 457 NAMIVGYAQNGRAKD-------------------------------ALLLFERMLCSNER 485

Query: 302 EDASTLASVLSACSSLGFLEHGKQ 325
            D+ T+  VLSAC   G ++ G++
Sbjct: 486 PDSVTMIGVLSACGHSGLVKEGRR 509


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 203/400 (50%), Gaps = 11/400 (2%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q + +    LI+ ++       A  +   +P     +++S+I+   +     +++ +F  
Sbjct: 47  QNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSR 106

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           + S     L  D  +L  +   CA+L+A + GKQIH    V+GLD D+ +  SL ++Y +
Sbjct: 107 MFS---HGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMR 163

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMWNSM 275
           CG    A +V + M E D    SAL+ GYA  G + +  R+         + + V WN +
Sbjct: 164 CGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGI 223

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           +SG+  +    EA+++F KM   G   D  T++SVL +      L  G+Q+HG+  K G+
Sbjct: 224 LSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGL 283

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
           + D  V SA+LD Y K G      KLF E ++ +T + N  IT  S  G ++ A  +F  
Sbjct: 284 LKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGL 343

Query: 396 MPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
              + +    +SW S+I G +QNG  IEAL+LF  M    ++ ++ ++ S++ AC NI++
Sbjct: 344 FKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAA 403

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           L  G         + L  D  + ++L+D Y KCG IKM +
Sbjct: 404 LGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQ 443



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 222/466 (47%), Gaps = 76/466 (16%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           DT +  L  L + C    +   GKQ+H      G L+    +   L  MYMRCG   DA 
Sbjct: 115 DTHV--LPNLFKVCAELSAFKAGKQIHCVACVSG-LDMDAFVQGSLFHMYMRCGRMGDAR 171

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            +FD                                M +K+  + + L+ G+A+ G L+ 
Sbjct: 172 KVFDR-------------------------------MSEKDVVTCSALLCGYARKGCLEE 200

Query: 122 ARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
              + ++M +     N ++WN ++  + R+G+ +EAV +F++++         D   +++
Sbjct: 201 VVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHH---LGFCPDQVTVSS 257

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           V+ +  D   L  G+QIH +++  GL  D  + S+++++YGK G      ++ +  +  +
Sbjct: 258 VLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMME 317

Query: 238 DFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
               +A I+G +  G ++ A  +F    ++  + + V W S+I+G   N +D EAL LF 
Sbjct: 318 TGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFR 377

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M+  GV  +  T+ S+L AC ++  L HG+  HG A +V ++DDV V SAL+D Y+K  
Sbjct: 378 EMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAK-- 435

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        CGRI+ ++ +F  MP K+L+ WNS++ G S 
Sbjct: 436 -----------------------------CGRIKMSQIVFNMMPTKNLVCWNSLMNGYSM 466

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +G   E + +F ++ +  L+ D  S  S++SAC  +   + G + F
Sbjct: 467 HGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 140/280 (50%), Gaps = 13/280 (4%)

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           ++L    + D +  + LI+ Y+N    NDA  +     D +   ++S+I         ++
Sbjct: 40  RILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQ 99

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           ++ +F +M  +G++ D   L ++   C+ L   + GKQ+H  AC  G+  D  V  +L  
Sbjct: 100 SIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFH 159

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSL 401
            Y + G   DA K+F  +   D +  + ++  Y+  G +E+   I   M      PN  +
Sbjct: 160 MYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPN--I 217

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           +SWN ++ G +++G   EA+ +F  M+ L    D+ +++SV+ +  +  +L +G Q+   
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGY 277

Query: 462 VTIIGLDSDQIISTSLVDFYCKC----GFIKM-DEYYLMQ 496
           V   GL  D+ + ++++D Y K     G IK+ DE+ +M+
Sbjct: 278 VIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMME 317



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 129/315 (40%), Gaps = 80/315 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L S     ++++G+Q+H + +K+G+L     I+  +L MY + G+    + LFDE 
Sbjct: 255 VSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVIS-AMLDMYGKSGHVYGIIKLFDEF 313

Query: 68  P-----------------------------------RRNCFSWNAMIEGFMKLGHKEKSL 92
                                                 N  SW ++I G  + G   ++L
Sbjct: 314 EMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEAL 373

Query: 93  QLF------NVMPQK----------------------NDFSWNM-----------LISGF 113
           +LF       V P +                      + F+  +           LI  +
Sbjct: 374 ELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMY 433

Query: 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           AK G +K ++ +FN MP +N + WNS+++ Y  +G A+E + +F+ L   +  RL+ D  
Sbjct: 434 AKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESL---MRTRLKPDFI 490

Query: 174 ILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
              +++ AC  +   + G +  + +    G+       S +VNL G+ G    A  ++  
Sbjct: 491 SFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKE 550

Query: 233 MK-EPDDFCLSALIS 246
           +  EPD     AL++
Sbjct: 551 IPFEPDSCVWGALLN 565



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 21/202 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++  G+  H   ++  +L+  + + + L+ MY +CG    + ++F+ M
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDD-VHVGSALIDMYAKCGRIKMSQIVFNMM 449

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
           P +N   WN+++ G+   G  ++ + +F  + +   K DF S+  L+S   + G      
Sbjct: 450 PTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGW 509

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M     I      ++ M++   R G  +EA  L KE+        + D+ +   +
Sbjct: 510 KYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIP------FEPDSCVWGAL 563

Query: 179 IGAC-----ADLAALEYGKQIH 195
           + +C      DLA +   K  H
Sbjct: 564 LNSCRLQNNVDLAEIAAQKLFH 585


>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 762

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 223/482 (46%), Gaps = 70/482 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L  C    S+  G+ +H + +K G   S+  +   L+ MY +    +D   +FD  
Sbjct: 21  FAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVG-ALIDMYAKNNRMSDCRRVFDGG 79

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SW ++I G++K G  E++L++F  M     + +  ++  +I+ +   G L  A 
Sbjct: 80  VSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVINAYVALGRLDDAL 139

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF  MP  N +AWN MI  + + G   +++ LF  +    ++  +     L +V+ A A
Sbjct: 140 GLFFQMPNPNVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRS---TLGSVLSAIA 196

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L  L++G  +H+  +  GLD +  +GSSL+N+Y KC +  +A +V + +          
Sbjct: 197 SLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPI---------- 246

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                       D R V         V+WN+M+ GY  N    E + L   M+  G   D
Sbjct: 247 ------------DERNV---------VLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPD 285

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  S+LSAC+ L  +E G+Q+H    K     ++ V +AL+D Y+K G   DA K F 
Sbjct: 286 EFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFE 345

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +K  D                                +SWN++IVG  Q    +EA  +
Sbjct: 346 LMKSRDN-------------------------------VSWNAIIVGYVQEEDEVEAFLM 374

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M+ + +  D+ SLAS++SACAN+   E G+ +       GL++     +SL+D Y K
Sbjct: 375 FQKMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLSVKSGLETSLYAGSSLIDMYAK 434

Query: 484 CG 485
           CG
Sbjct: 435 CG 436



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 144/521 (27%), Positives = 233/521 (44%), Gaps = 106/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +  +   +  G  +H   +K+G L+S + + + L+ MY +C     A  +FD +
Sbjct: 188 LGSVLSAIASLTDLDFGLLVHAEAIKQG-LDSNVYVGSSLINMYAKCKELEAAKKVFDPI 246

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             RN   WNAM+ G+ + G+  + ++L + M                             
Sbjct: 247 DERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLEHVEGGR 306

Query: 101 -------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN F+ N+     LI  +AK+G L+ AR  F  M  R+ ++WN++I  YV+  
Sbjct: 307 QLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDNVSWNAIIVGYVQEE 366

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA  +F++++  LV  L  D   LA+++ ACA++   E GK IH   + +GL+    
Sbjct: 367 DEVEAFLMFQKMH--LVGILP-DEVSLASILSACANVEGFEQGKPIHCLSVKSGLETSLY 423

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GSSL+++Y K                               CG +  A+++     + S
Sbjct: 424 AGSSLIDMYAK-------------------------------CGDVGSAQKILKSMPEHS 452

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V  N++I+GY   N + EA++LF KM+  G+     T AS+L  C     L  G Q+H 
Sbjct: 453 VVSINALIAGYAPVNLE-EAIILFEKMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHC 511

Query: 329 HACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
              K G+  DD  +  +LL  Y K    +DA  LFSE                       
Sbjct: 512 LILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSEF---------------------- 549

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                  + P KS I W +MI GL+QN    EAL  +  M   +   D+ +  SV+ ACA
Sbjct: 550 -------SNP-KSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFVSVLRACA 601

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +SS+  G ++ + +   GLD D+   ++L+D Y KCG ++
Sbjct: 602 VLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVR 642



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 209/490 (42%), Gaps = 107/490 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +  G+QLH   + K    S L + N L+ MY + G   DA   F+ M  R
Sbjct: 292 ILSACACLEHVEGGRQLH-SIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSR 350

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMP------------------------- 99
           +  SWNA+I G+++   + ++  +F       ++P                         
Sbjct: 351 DNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGKPIH 410

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + + ++ + LI  +AK G++ +A+ +   MP  + ++ N++I  Y       
Sbjct: 411 CLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPVNL-E 469

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+++ +   E L       A+++  C     L  G QIH  IL  GL +D     
Sbjct: 470 EAIILFEKMQA---EGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYD----- 521

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT-SSV 270
                                    DDF   +L+  Y    +  DAR +F   ++  S++
Sbjct: 522 -------------------------DDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTI 556

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +W +MISG   NN   EAL  + +MR    L D +T  SVL AC+ L  +  G+++H   
Sbjct: 557 LWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDGREIHSLI 616

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            + G+  D    SAL+D Y+K                               CG +  + 
Sbjct: 617 FRTGLDLDESTCSALIDMYAK-------------------------------CGDVRSSM 645

Query: 391 HIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +F  M +K+ +ISWNSMIVG ++NG    AL +F  M +  +  D  +   V++AC++ 
Sbjct: 646 QVFEDMHSKNDVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHA 705

Query: 450 SSLELGEQVF 459
             +  G Q+F
Sbjct: 706 GRVSEGRQIF 715



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 166/353 (47%), Gaps = 66/353 (18%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDF------------------------- 205
           + F  A V+  CA L ++E+G+ +H +++  G +F                         
Sbjct: 17  NEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSDCRRVF 76

Query: 206 ------DSVLGSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSALISGYANCGKMN 255
                 D+V  +SL+  Y K G    A +V   MK    EPD      +I+ Y   G+++
Sbjct: 77  DGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVINAYVALGRLD 136

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           DA  +F +  + + V WN MISG+     +T+++ LF  MR+ G+    STL SVLSA +
Sbjct: 137 DALGLFFQMPNPNVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIA 196

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           SL  L+ G  VH  A K G+  +V V S+L++ Y+K                        
Sbjct: 197 SLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAK------------------------ 232

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  C  +E AK +F  +  ++++ WN+M+ G +QNG   E ++L  NM       D
Sbjct: 233 -------CKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPD 285

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +F+  S++SACA +  +E G Q+ + +      S+  +  +L+D Y K GF++
Sbjct: 286 EFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLE 338



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 158/365 (43%), Gaps = 86/365 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C        GK +H   +K G L ++L   + L+ MY +CG+   A  +   M
Sbjct: 390 LASILSACANVEGFEQGKPIHCLSVKSG-LETSLYAGSSLIDMYAKCGDVGSAQKILKSM 448

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------------------PQK----- 101
           P  +  S NA+I G+  + + E+++ LF  M                     P++     
Sbjct: 449 PEHSVVSINALIAGYAPV-NLEEAIILFEKMQAEGLNPSEITFASLLDGCGGPEQLILGI 507

Query: 102 --------------NDFSWNMLISGFAKAGELKTARTLFNDMPR-RNAIAWNSMIHCYVR 146
                         +DF    L+  + K+     AR LF++    ++ I W +MI    +
Sbjct: 508 QIHCLILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQ 567

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAF----ILATVIGACADLAALEYGKQIHSHILVNG 202
           N  + EA++ ++E+ S       C+A        +V+ ACA L+++  G++IHS I   G
Sbjct: 568 NNCSDEALQFYQEMRS-------CNALPDQATFVSVLRACAVLSSIGDGREIHSLIFRTG 620

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF- 261
           LD D                              +  C SALI  YA CG +  + +VF 
Sbjct: 621 LDLD------------------------------ESTC-SALIDMYAKCGDVRSSMQVFE 649

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D  +    + WNSMI G+  N     AL +F++M++  V+ D  T   VL+ACS  G + 
Sbjct: 650 DMHSKNDVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHAGRVS 709

Query: 322 HGKQV 326
            G+Q+
Sbjct: 710 EGRQI 714


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 224/495 (45%), Gaps = 109/495 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEM 67
           A LLQ+C    + + G Q+H H +K G+      + N LL +Y + G    +   +FD +
Sbjct: 63  ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF-VGNSLLTLYFKLGTDFPETRKVFDGL 121

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELK--- 120
             ++  SW +MI G++++G    SL+LF  M     + N F+ + +I   ++ G+LK   
Sbjct: 122 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGR 181

Query: 121 --------------------------------TARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                            AR LF+++   +AI W S+I    RN 
Sbjct: 182 IFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRND 241

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+R F  +  D    +  D F   TV+ AC +L  L+ GK++H+ ++  G   + V
Sbjct: 242 FFDEALRFFYSMQRD--HGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVV 299

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + SSLV++YGK                               CG + +++R+FDR    +
Sbjct: 300 VESSLVDMYGK-------------------------------CGSVGESQRIFDRMPIKN 328

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV W++++ GY  N +    + +F KM +     D     ++L  C+ L  +  GK+VH 
Sbjct: 329 SVSWSALLGGYCQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHC 384

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              + G   DVIV SAL+D Y+K                               CG IE 
Sbjct: 385 QYIRKGGWRDVIVESALVDLYAK-------------------------------CGCIEY 413

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ IF  MP ++LI+WNSMI G +QNG   EAL +F  M K  ++ D  S   ++ AC++
Sbjct: 414 AQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSH 473

Query: 449 ISSLELGEQVFARVT 463
              ++ G + F  +T
Sbjct: 474 RGLVDEGREYFISMT 488



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 160/344 (46%), Gaps = 71/344 (20%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G    A++L K ++      +     + A+++  C  + A  +G QIH+H++ +GL+F
Sbjct: 36  KSGELSGALQLLKSIDPG---EISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEF 92

Query: 206 DSVLGSSLVNLYGKCG-DFNSANQVLNMMKEPDDFCLSALISGYANCGK-MNDARRVFDR 263
           D  +G+SL+ LY K G DF    +V + +   D    +++ISGY   GK MN        
Sbjct: 93  DRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMN-------- 144

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                                   +L LF KM   GV  +A TL++V+ ACS LG L+ G
Sbjct: 145 ------------------------SLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 180

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +  HG     G   + ++ASAL+D + +     DA +LF EL   D              
Sbjct: 181 RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDA------------- 227

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM--DKFSLAS 441
                             I W S+I  L++N    EAL  F +M + D  M  D F+  +
Sbjct: 228 ------------------ICWTSIISALTRNDFFDEALRFFYSMQR-DHGMCPDGFTFGT 268

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           V++AC N+  L+ G++V A+V   G   + ++ +SLVD Y KCG
Sbjct: 269 VLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCG 312



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 135/299 (45%), Gaps = 47/299 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              +L +C     +  GK++H   +  G   + + + + L+ MY +CG+  ++  +FD M
Sbjct: 266 FGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVV-VESSLVDMYGKCGSVGESQRIFDRM 324

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----------------------- 104
           P +N  SW+A++ G+ + G  +  +Q+F  M + + +                       
Sbjct: 325 PIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHC 384

Query: 105 ------SW------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                  W      + L+  +AK G ++ A+T+F+ MP RN I WNSMI  + +NG   E
Sbjct: 385 QYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEE 444

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-- 210
           A+R+F ++   + E ++ D      ++ AC+    ++ G++   + +    D+   +G  
Sbjct: 445 ALRIFNQM---VKEGIKPDYISFIGILFACSHRGLVDEGRE---YFISMTKDYGIKVGIE 498

Query: 211 --SSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTD 266
             S +V+L G+ G    A  ++      DD  L +AL+     C     A R+  R  +
Sbjct: 499 HYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVME 557



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              +L++C    ++  GK++H  +++KG     + + + L+ +Y +CG    A  +FD+M
Sbjct: 363 FGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVI-VESALVDLYAKCGCIEYAQTIFDQM 421

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
           P RN  +WN+MI GF + G  E++L++FN M +   K D+ S+  ++   +  G +   R
Sbjct: 422 PVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGR 481

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M +   I      ++ M+    R G   EA  L +   SD  +    D+ + A +
Sbjct: 482 EYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIE--TSDFRD----DSSLWAAL 535

Query: 179 IGACADLAALEYGKQIHSHILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      E  ++I   ++    D+    VL   L N+Y   G +N A ++  +MK+
Sbjct: 536 LGACTTCTNYEIAERIAKRVMELEPDYHLSYVL---LANVYKAVGRWNDALRIRRLMKD 591


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 230/497 (46%), Gaps = 85/497 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C     +   +Q+H   +   +  S   +A++L+ +Y R     DA  +FD +P+ 
Sbjct: 20  LIQLCAESGHLAAARQIHARLVAASVTPSNF-LASKLISLYSRADRLRDARRVFDSIPQP 78

Query: 71  NCFSWNA-MIEGFMKLGHKEKSLQLFNVMPQKND-------------------------- 103
           + F+WNA +I   +       +++LF       D                          
Sbjct: 79  SLFAWNAILISLSLHSPDPSAAVRLFASSAVSPDEITLSTLLRSLAASGPALSPLVTGEL 138

Query: 104 -------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                        F  N LI+ +A AG++++AR +F++MPRR+ ++WNS+I    R G+ 
Sbjct: 139 HAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAGWY 198

Query: 151 REAVRLFKELNSDLVERLQC--------DAFILATVIGACADLAALEYGKQIHSHILVNG 202
           RE + LF+E       R++C        +   + +V+ ACA L  +++G  +H     +G
Sbjct: 199 RECLDLFQEF-----VRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESG 253

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           LD D  + +S++  Y KCG    A Q+L+ M   D    SA+I+GY N G + +  ++F 
Sbjct: 254 LDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEGMQLFR 313

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           + +     MWNS+I+G + N   ++ L L  +M  + VL +++TL+ V+ +  S   L  
Sbjct: 314 QASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSFSTLLG 373

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
            KQ HG+A +      + + SAL+D Y+K G                             
Sbjct: 374 AKQAHGYAIRNDYDQSIRLVSALIDAYAKAGF---------------------------- 405

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
              ++ A+ +F+   ++S I W S+I  ++ +G  +EAL LF  M     + D  +  +V
Sbjct: 406 ---LDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTV 462

Query: 443 ISACANISSLELGEQVF 459
           +SACA+   +    +VF
Sbjct: 463 LSACAHSGKVAEARKVF 479



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 201/456 (44%), Gaps = 85/456 (18%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           +  +  L R L +     S  V  +LH     +G   S L ++N L+  Y   G+   A 
Sbjct: 113 EITLSTLLRSLAASGPALSPLVTGELHAVAFLRG-FGSDLFVSNALITAYANAGDMRSAR 171

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------VMP---------- 99
            +FDEMPRR+  SWN++I    + G   + L LF             V P          
Sbjct: 172 AVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLH 231

Query: 100 -----QKNDFS------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
                +  DF                   WN +I  +AK G L+ AR L + M R+++I+
Sbjct: 232 ACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSIS 291

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI--GACADLAALEYGKQI 194
           +++MI  Y+ NG   E ++LF++ ++  +        ++A ++  G  +D+  L   + I
Sbjct: 292 YSAMITGYMNNGHVEEGMQLFRQASARGISMWNS---VIAGLVQNGRQSDVLRL-LQEMI 347

Query: 195 HSHILVNGL----------DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
            S +L N             F ++LG+   + Y    D++ + ++           +SAL
Sbjct: 348 ASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRL-----------VSAL 396

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           I  YA  G ++ AR+VF  T   S+++W S+IS   ++ E  EAL LF++M   G   D 
Sbjct: 397 IDAYAKAGFLDTARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDT 456

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFS 363
            T  +VLSAC+  G +   ++V      V  I  VI   A ++   S+ GM  +A KL +
Sbjct: 457 VTFTTVLSACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVN 516

Query: 364 EL------KVYDTILLNTMITVYSSCGRIEDAKHIF 393
           ++      KV+  +L    +      G +E  ++ F
Sbjct: 517 KMPFEPNAKVWGALLNGAAVV-----GDVEFGRYAF 547



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 185/400 (46%), Gaps = 53/400 (13%)

Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS-MIHCYVRNGFAREAVRLFKE 159
            ++F  + LIS +++A  L+ AR +F+ +P+ +  AWN+ +I   + +     AVRLF  
Sbjct: 47  PSNFLASKLISLYSRADRLRDARRVFDSIPQPSLFAWNAILISLSLHSPDPSAAVRLFAS 106

Query: 160 LNSDLVERLQCDAFILATVIGACAD----LAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
                   +  D   L+T++ + A     L+ L  G ++H+   + G       GS L  
Sbjct: 107 ------SAVSPDEITLSTLLRSLAASGPALSPLVTG-ELHAVAFLRGF------GSDL-- 151

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
                                  F  +ALI+ YAN G M  AR VFD       V WNS+
Sbjct: 152 -----------------------FVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSL 188

Query: 276 ISGYISNNEDTEALLLFHKMRR------NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           IS         E L LF +  R      +GV  +  T+ SVL AC+ L  ++ G  VH  
Sbjct: 189 ISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDFGIGVHRF 248

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           A + G+  D+ V ++++  Y+K G    A +L   +   D+I  + MIT Y + G +E+ 
Sbjct: 249 AAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGHVEEG 308

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +FR    + +  WNS+I GL QNG   + L L   M    +  +  +L+ V+ +  + 
Sbjct: 309 MQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEMIASKVLPNSATLSIVMPSVPSF 368

Query: 450 SSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCGFI 487
           S+L   +Q  A    I  D DQ I   ++L+D Y K GF+
Sbjct: 369 STLLGAKQ--AHGYAIRNDYDQSIRLVSALIDAYAKAGFL 406



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 50/291 (17%)

Query: 213 LVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L+ L  + G   +A Q+    +     P +F  S LIS Y+   ++ DARRVFD     S
Sbjct: 20  LIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRDARRVFDSIPQPS 79

Query: 269 SVMWNS-MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL----SACSSLGFLEHG 323
              WN+ +IS  + + + + A+ LF     + V  D  TL+++L    ++  +L  L  G
Sbjct: 80  LFAWNAILISLSLHSPDPSAAVRLFAS---SAVSPDEITLSTLLRSLAASGPALSPLVTG 136

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
            ++H  A   G   D+ V++AL+  Y+  G    A  +F E+                  
Sbjct: 137 -ELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEM------------------ 177

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL------DLRMDKF 437
                        P + ++SWNS+I   ++ G   E LDLF    ++       +  +  
Sbjct: 178 -------------PRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGV 224

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ SV+ ACA +  ++ G  V       GLD D  +  S++ FY KCG ++
Sbjct: 225 TVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQ 275



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 106/237 (44%), Gaps = 21/237 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ S  +  ++   KQ H + ++    + ++ + + L+  Y + G    A  +F   
Sbjct: 358 LSIVMPSVPSFSTLLGAKQAHGYAIRND-YDQSIRLVSALIDAYAKAGFLDTARKVFKLT 416

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             R+   W ++I      G   ++L LFN M     + +  ++  ++S  A +G++  AR
Sbjct: 417 EHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEAR 476

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +FN M     I+     +  M+    R G  +EAV+L  ++        + +A +   +
Sbjct: 477 KVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMP------FEPNAKVWGAL 530

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV--NLYGKCGDFNSANQVLNMM 233
           +   A +  +E+G+     + V  ++  +  G+ +V  NLY   G +  A  + +M+
Sbjct: 531 LNGAAVVGDVEFGRYAFDRLFV--IEPKNT-GNYIVMANLYSNAGKWEEAETIRSML 584


>gi|357147690|ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Brachypodium distachyon]
          Length = 859

 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 251/506 (49%), Gaps = 26/506 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNST--LPIANRLLQMYMRCGNPTDALLLFD 65
           + R+LQ+C     + +G  LH   +++G +     +P++N +L MY++CG    A ++F+
Sbjct: 151 ITRILQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGFARVVFE 210

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKT 121
           +M RR+  +WN+MI G  +    E++ +L + M ++       +WN LIS +A++G+L  
Sbjct: 211 KMGRRDLGTWNSMIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNTLISSYARSGDLNV 270

Query: 122 ARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           A  L   M       + + W S++  +V +    EA++ F  +    VE    +   +A 
Sbjct: 271 AVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAGVEP---NGMTIAC 327

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
            I ACA L  L  G  +H H +  G   + + G+SLV++Y KCG+  +A+++ N + E D
Sbjct: 328 AISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIPEKD 387

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFH 293
            F  +++++GYA  G    A  +F +  +     +++ WN+MISGYI N +D  A  LF 
Sbjct: 388 IFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNGDDERAFELFQ 447

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-- 351
            M   GV  D ++   +++     G+ +   ++      V +  D I   +++  ++   
Sbjct: 448 TMESYGVKRDTASWNILIAGSVHNGYFDRALRIFRQMQAVLIKPDYITVLSIIPAFANLV 507

Query: 352 ---RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
              +     AC     L++ D  + N +I  YS  G +  A  +F    ++++ISWN +I
Sbjct: 508 AAWKVREIHACIFHHNLEI-DGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCII 566

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGL 467
           V    +GSP E L+ F  M +  +  D  +L +VI A    + +  G ++F  +     +
Sbjct: 567 VAHLLHGSPTEVLNHFYKMKQQGVLPDHTTLTAVIKAYGMEAMVSEGREIFLNMEKNYNV 626

Query: 468 DSDQIISTSLVDFYCKCGFIKMDEYY 493
             D    T++VD   + G  ++ E Y
Sbjct: 627 TPDLDHYTAMVDLLGRSG--RLQEAY 650



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 195/419 (46%), Gaps = 49/419 (11%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+  + AG L  AR +F+ M  ++ +AW+SMI  Y   G   E + L  ++ S   E +
Sbjct: 88  LIAFHSSAGRLDDARKVFDGMSHKDLLAWSSMIGAYATRGMFDEVLVLAVKMVS---EGV 144

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGKCGDFNS 225
             D F++  ++ ACA    LE G  +HS  +  G    + D  + +S++ +Y KCG+   
Sbjct: 145 LPDRFLITRILQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGF 204

Query: 226 ANQVLNMMK-----------------------------------EPDDFCLSALISGYAN 250
           A  V   M                                    EP     + LIS YA 
Sbjct: 205 ARVVFEKMGRRDLGTWNSMIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNTLISSYAR 264

Query: 251 CGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
            G +N A  + ++  ++      V W S++SG++ ++   EAL  F +MR  GV  +  T
Sbjct: 265 SGDLNVAVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAGVEPNGMT 324

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +A  +SAC+SL  L  G  +H HA KVG + +V+  ++L+D Y+K G    A ++F+++ 
Sbjct: 325 IACAISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIP 384

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALD 422
             D    N+M+  Y+  G    A  +F  M N    ++ I+WN+MI G  +NG    A +
Sbjct: 385 EKDIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNGDDERAFE 444

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           LF  M    ++ D  S   +I+   +    +   ++F ++  + +  D I   S++  +
Sbjct: 445 LFQTMESYGVKRDTASWNILIAGSVHNGYFDRALRIFRQMQAVLIKPDYITVLSIIPAF 503



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 192/385 (49%), Gaps = 50/385 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  + +C +   ++ G  LH H +K G + + L   N L+ MY +CG    A  +F+++
Sbjct: 325 IACAISACASLKLLNQGSMLHCHAIKVGSVKNVLS-GNSLVDMYAKCGETVAASRIFNQI 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKAGELKTAR 123
           P ++ FSWN+M+ G+ + G+  K+ +LF    N   ++N  +WN +ISG+ + G+ + A 
Sbjct: 384 PEKDIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNGDDERAF 443

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            LF  M     +R+  +WN +I   V NG+   A+R+F+++ + L+   + D   + ++I
Sbjct: 444 ELFQTMESYGVKRDTASWNILIAGSVHNGYFDRALRIFRQMQAVLI---KPDYITVLSII 500

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            A A+L A    ++IH+ I  + L+ D  + ++L+N                        
Sbjct: 501 PAFANLVAAWKVREIHACIFHHNLEIDGKIANALIN------------------------ 536

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                   Y+  G +  A  VFDR +  + + WN +I  ++ +   TE L  F+KM++ G
Sbjct: 537 -------AYSKSGDLAGACAVFDRHSSRNIISWNCIIVAHLLHGSPTEVLNHFYKMKQQG 589

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDA 358
           VL D +TL +V+ A      +  G+++  +  K   V  D+   +A++D   + G   +A
Sbjct: 590 VLPDHTTLTAVIKAYGMEAMVSEGREIFLNMEKNYNVTPDLDHYTAMVDLLGRSGRLQEA 649

Query: 359 CKLFSE------LKVYDTILLNTMI 377
            +L  E      L V++ +L + ++
Sbjct: 650 YELIDEMPLTPNLTVWEALLTSAIM 674



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 42/294 (14%)

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           +EP     + LI+ +++ G+++DAR+VFD  +    + W+SMI  Y +     E L+L  
Sbjct: 78  EEPRFVSETKLIAFHSSAGRLDDARKVFDGMSHKDLLAWSSMIGAYATRGMFDEVLVLAV 137

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI---DDVIVASALLDTYS 350
           KM   GVL D   +  +L AC+    LE G  +H  A + G +    DV V++++L  Y 
Sbjct: 138 KMVSEGVLPDRFLITRILQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYV 197

Query: 351 KRGMPSDACKLFSELKVYD-----------------------------------TILLNT 375
           K G    A  +F ++   D                                    +  NT
Sbjct: 198 KCGELGFARVVFEKMGRRDLGTWNSMIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNT 257

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           +I+ Y+  G +  A  +   M    +    ++W S++ G   +   +EAL  F  M    
Sbjct: 258 LISSYARSGDLNVAVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAG 317

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  +  ++A  ISACA++  L  G  +      +G   + +   SLVD Y KCG
Sbjct: 318 VEPNGMTIACAISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCG 371


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 230/497 (46%), Gaps = 83/497 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFD 65
            RL+Q C  H    VGKQLH       +L+S +P   + ++L+  Y + G+  DA  +F 
Sbjct: 7   GRLIQHCTDHLFFRVGKQLHARL----VLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFG 62

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---------------------- 103
           ++PR+N FSWNA++  +         L+LF+ +   N                       
Sbjct: 63  KIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFS 122

Query: 104 ---------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                F  N LI+ +++  EL  AR +F+ MP R+ ++WN+M+ 
Sbjct: 123 NSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLA 182

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y + G   +   LF+ + S L   ++ +A    +V+ ACA    L +G ++H  +  + 
Sbjct: 183 GYSQGGSYEKCKELFRVMLSSL--EVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQ 240

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           +  D  L ++++ LY KCG  + A ++   M E D     ++ISGY   G +N A  +F 
Sbjct: 241 IKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFR 300

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                    WN++ISG + NN    A+ +F  M+ +G   +  TLAS+L   S    L+ 
Sbjct: 301 EQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKG 360

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++HG+A +     ++ VA+A++D+Y+K                               
Sbjct: 361 GKEIHGYAIRNTYDRNIYVATAIIDSYAK------------------------------- 389

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG +  A+ +F  +  +SLI+W S+I   + +G    AL LF  M    ++ D+ +  SV
Sbjct: 390 CGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSV 449

Query: 443 ISACANISSLELGEQVF 459
           ++ACA+   L+   ++F
Sbjct: 450 LAACAHSGELDEAWKIF 466



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 200/409 (48%), Gaps = 36/409 (8%)

Query: 82  FMKLGHK-EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           F ++G +    L L +V+P  ++F  + LIS ++K+G ++ A  +F  +PR+N  +WN++
Sbjct: 18  FFRVGKQLHARLVLSSVVP--DNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNAL 75

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE-YGKQIHSHIL 199
           +  Y  +    + ++LF  L +     ++ D F +   + A A L +     K++HS IL
Sbjct: 76  LISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFIL 135

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             GL++D                                F ++ALI+ Y+ C ++  AR 
Sbjct: 136 RRGLEYDI-------------------------------FVVNALITFYSRCDELVLARI 164

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLG 318
           +FDR  +   V WN+M++GY       +   LF  M  +  V  +A T  SVL AC+   
Sbjct: 165 MFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSN 224

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G +VH    +  +  DV + +A++  Y+K G    A +LF E+   D I   +MI+
Sbjct: 225 DLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMIS 284

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
            Y   G +  A  +FR      L +WN++I GL QN     A+D+F  M     R +  +
Sbjct: 285 GYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVT 344

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           LAS++   ++ S+L+ G+++         D +  ++T+++D Y KCG++
Sbjct: 345 LASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYL 393



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 187/454 (41%), Gaps = 128/454 (28%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           + K++H   L++G L   + + N L+  Y RC     A ++FD MP R+  SWNAM+ G+
Sbjct: 126 LAKEVHSFILRRG-LEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGY 184

Query: 83  MKLGHKEKSLQLFNVM--------------------PQKNDFS----------------- 105
            + G  EK  +LF VM                     Q ND                   
Sbjct: 185 SQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMD 244

Query: 106 ---WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
              WN +I  +AK G L  AR LF +M  ++AI + SMI  Y+ +GF  +A+ LF+E   
Sbjct: 245 VSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQER 304

Query: 163 -----------------------DLVERLQC-----DAFILATVIGACADLAALEYGKQI 194
                                  D+   +Q      +   LA+++   +  + L+ GK+I
Sbjct: 305 PRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEI 364

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H + + N  D +  + +++++ Y KCG  + A  V + +K       +++IS YA  G  
Sbjct: 365 HGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDA 424

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           N                                AL LF++M  NG+  D  T  SVL+AC
Sbjct: 425 N-------------------------------VALSLFYEMLTNGIQPDQVTFTSVLAAC 453

Query: 315 SSLGFL------------EHGKQ--VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           +  G L            E+G Q  V  +AC VGV+             S+ G  SDA +
Sbjct: 454 AHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVL-------------SRAGKLSDAVE 500

Query: 361 LFSELKVYDTI-LLNTMITVYSSCGRIEDAKHIF 393
             S++ +  T  +   ++   S  G +E  K++F
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVELGKYVF 534



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 132/325 (40%), Gaps = 76/325 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ+C   + +  G ++H  F+ +  +   + + N ++ +Y +CG+   A  LF+EM  +
Sbjct: 216 VLQACAQSNDLIFGIEVH-RFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEK 274

Query: 71  NCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFNVMP 99
           +  +                               WNA+I G ++   +E ++ +F  M 
Sbjct: 275 DAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQ 334

Query: 100 Q----------------------------------KNDFSWNM-----LISGFAKAGELK 120
                                              +N +  N+     +I  +AK G L 
Sbjct: 335 SHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLH 394

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            A+ +F+ +  R+ IAW S+I  Y  +G A  A+ LF E+   L   +Q D     +V+ 
Sbjct: 395 GAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEM---LTNGIQPDQVTFTSVLA 451

Query: 181 ACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDD 238
           ACA    L+   +I + +L   G+       + +V +  + G  + A + ++ M  EP  
Sbjct: 452 ACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTA 511

Query: 239 FCLSALISGYANCGKMNDARRVFDR 263
               AL++G +  G +   + VFDR
Sbjct: 512 KVWGALLNGASVAGDVELGKYVFDR 536



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S    ++  C+   F   GKQ+H       V+ D  + S L+  YSK G           
Sbjct: 4   SAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSG----------- 52

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                                I DA ++F  +P K++ SWN++++  + +    + L LF
Sbjct: 53  --------------------SIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLF 92

Query: 425 ---CNMNKLDLRMDKFSLASVISACANI-SSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
               N N  D++ D+F++   + A A++ S+  L ++V + +   GL+ D  +  +L+ F
Sbjct: 93  SSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITF 152

Query: 481 YCKC 484
           Y +C
Sbjct: 153 YSRC 156



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 109/239 (45%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L   +   ++  GK++H + ++    +  + +A  ++  Y +CG    A L+FD++
Sbjct: 345 LASILPVFSHFSTLKGGKEIHGYAIRN-TYDRNIYVATAIIDSYAKCGYLHGAQLVFDQI 403

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             R+  +W ++I  +   G    +L LF  M     Q +  ++  +++  A +GEL  A 
Sbjct: 404 KGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAW 463

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +FN +     I      +  M+    R G   +AV    ++       L+  A +   +
Sbjct: 464 KIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMP------LEPTAKVWGAL 517

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV--NLYGKCGDFNSANQVLNMMKE 235
           +   +    +E GK +   +    ++ ++  G+ ++  NLY + G +  A+ + ++MKE
Sbjct: 518 LNGASVAGDVELGKYVFDRLF--EIEPENT-GNYVIMANLYSQSGRWKDADTIRDLMKE 573


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 226/488 (46%), Gaps = 73/488 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE- 66
            A  L +C    ++H+G+ +H   +K G L ST      L+ +Y +C + T A  +F   
Sbjct: 50  FAVTLSACAKLQNLHLGRAVHSCVIKSG-LESTSFCQGALIHLYAKCNSLTCARTIFASA 108

Query: 67  -MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTA 122
             P  +  SW A+I G+++ G   ++L +F+ M      +  +   +++ +   G+L  A
Sbjct: 109 PFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDA 168

Query: 123 RTLFNDM--PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
             LF  M  P RN +AWN MI  + +     EA+  F +++   V+  +     LA+V+ 
Sbjct: 169 CQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRS---TLASVLS 225

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           A A LAAL +G  +H+H +  G +    + SSL+N+YGKC             + PD   
Sbjct: 226 AIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKC-------------QMPD--- 269

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                          DAR+VFD  +  + ++WN+M+  Y  N   +  + LF  M   G+
Sbjct: 270 ---------------DARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGI 314

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T  S+LS C+   +LE G+Q+H    K     ++ V +AL+D Y+K G   +A K
Sbjct: 315 HPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGK 374

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
            F  +   D                                ISWN++IVG  Q      A
Sbjct: 375 HFEHMTYRDH-------------------------------ISWNAIIVGYVQEEVEAGA 403

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
             LF  M    +  D+ SLAS++SAC NI  LE G+Q       +GL+++    +SL+D 
Sbjct: 404 FSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDM 463

Query: 481 YCKCGFIK 488
           Y KCG IK
Sbjct: 464 YSKCGDIK 471



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 236/521 (45%), Gaps = 106/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +  +  +++ G  +H H +K+G   S++ +A+ L+ MY +C  P DA  +FD +
Sbjct: 220 LASVLSAIASLAALNHGLLVHAHAIKQG-FESSIYVASSLINMYGKCQMPDDARQVFDAI 278

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK-------------------- 101
            ++N   WNAM+  + + G     ++LF       + P +                    
Sbjct: 279 SQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGR 338

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        N F  N LI  +AKAG LK A   F  M  R+ I+WN++I  YV+  
Sbjct: 339 QLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEE 398

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A  LF+ +   +++ +  D   LA+++ AC ++  LE G+Q H   +  GL+ +  
Sbjct: 399 VEAGAFSLFRRM---ILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLF 455

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GSSL+++Y KCGD   A++  + M E     ++ALI+GYA                   
Sbjct: 456 AGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYA------------------- 496

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                      + N +  E++ L H+M+  G+     T AS++  C     +  G Q+H 
Sbjct: 497 -----------LKNTK--ESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHC 543

Query: 329 HACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
              K G++     + ++LL  Y      +DA  LFSE                       
Sbjct: 544 AIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSE----------------------- 580

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                F ++  KS++ W ++I G  QN     AL+L+  M   ++  D+ +  +V+ ACA
Sbjct: 581 -----FSSL--KSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACA 633

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +SSL  G ++ + +   G D D++ S++LVD Y KCG +K
Sbjct: 634 LLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVK 674



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 225/525 (42%), Gaps = 106/525 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     + VG+QLH   +KK    S L + N L+ MY + G   +A   F+ M  R
Sbjct: 324 ILSTCACFEYLEVGRQLHSAIIKKR-FTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYR 382

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           +  SWNA+I G+++   +  +  LF       ++P                         
Sbjct: 383 DHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFH 442

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + N F+ + LI  ++K G++K A   ++ MP R+ ++ N++I  Y      +
Sbjct: 443 CLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKN-TK 501

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E++ L  E+    +  L+      A++I  C   A +  G QIH  I+  GL        
Sbjct: 502 ESINLLHEMQ---ILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGL-------- 550

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-V 270
                   CG                +F  ++L+  Y +  ++ DA  +F   +   S V
Sbjct: 551 -------LCGS---------------EFLGTSLLGMYMDSQRLADANILFSEFSSLKSIV 588

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           MW ++ISG+I N     AL L+ +MR N +  D +T  +VL AC+ L  L  G+++H   
Sbjct: 589 MWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLI 648

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G   D + +SAL+D Y+K G    + ++F EL                         
Sbjct: 649 FHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELAT----------------------- 685

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                   K +ISWNSMIVG ++NG    AL +F  M +  +  D  +   V++AC++  
Sbjct: 686 -------KKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAG 738

Query: 451 SLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            +  G Q+F   V   G++        +VD   + GF+K  E ++
Sbjct: 739 WVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFI 783



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 159/356 (44%), Gaps = 69/356 (19%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D F  A  + ACA L  L  G+ +HS ++ +GL+  S    +L++LY KC     A  + 
Sbjct: 46  DQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIF 105

Query: 231 NMMKEPDDFCLS--ALISGYANCGKMNDARRVFDRTTDTS-------------------- 268
                P    +S  ALISGY   G  ++A  +FD+  +++                    
Sbjct: 106 ASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKL 165

Query: 269 ----------------SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                            V WN MISG+       EAL  FH+M ++GV    STLASVLS
Sbjct: 166 DDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLS 225

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           A +SL  L HG  VH HA K G    + VAS+L++ Y K  MP DA ++F  +   + I+
Sbjct: 226 AIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIV 285

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N M+ VY                               SQNG     ++LF +M    +
Sbjct: 286 WNAMLGVY-------------------------------SQNGFLSNVMELFLDMISCGI 314

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             D+F+  S++S CA    LE+G Q+ + +      S+  ++ +L+D Y K G +K
Sbjct: 315 HPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALK 370



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 155/360 (43%), Gaps = 76/360 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C     +  G+Q H   +K G L + L   + L+ MY +CG+  DA   +  M
Sbjct: 422 LASILSACGNIKVLEAGQQFHCLSVKLG-LETNLFAGSSLIDMYSKCGDIKDAHKTYSSM 480

Query: 68  PRRNCFSWNAMIEGFMKLGHKEK-----SLQLFNVMPQK--------------------- 101
           P R+  S NA+I G+     KE       +Q+  + P +                     
Sbjct: 481 PERSVVSVNALIAGYALKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQ 540

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPR-RNAIAWNSMIHCYVRN 147
                        ++F    L+  +  +  L  A  LF++    ++ + W ++I  +++N
Sbjct: 541 IHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQN 600

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
             +  A+ L++E+  +    +  D     TV+ ACA L++L  G++IHS I   G D D 
Sbjct: 601 ECSDVALNLYREMRDN---NISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDE 657

Query: 208 VLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           +  S+LV++Y KCGD  S+ QV   +  + D    +++I G+A  G    A +VFD    
Sbjct: 658 LTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFD---- 713

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
                                      +M ++ +  D  T   VL+ACS  G++  G+Q+
Sbjct: 714 ---------------------------EMTQSCITPDDVTFLGVLTACSHAGWVYEGRQI 746



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 119/252 (47%), Gaps = 41/252 (16%)

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           WN  + G  + +  +E +L F+    N G   D  T A  LSAC+ L  L  G+ VH   
Sbjct: 16  WNWRVQG--TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCV 73

Query: 331 CKVGVIDDVIVASALLDTYSK---------------------------------RGMPSD 357
            K G+        AL+  Y+K                                  G+P +
Sbjct: 74  IKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHE 133

Query: 358 ACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTM--PNKSLISWNSMIVGLS 412
           A  +F +++   V D + L T++  Y S G+++DA  +F+ M  P +++++WN MI G +
Sbjct: 134 ALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHA 193

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           +     EAL  F  M+K  ++  + +LASV+SA A++++L  G  V A     G +S   
Sbjct: 194 KTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIY 253

Query: 473 ISTSLVDFYCKC 484
           +++SL++ Y KC
Sbjct: 254 VASSLINMYGKC 265


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 161/612 (26%), Positives = 263/612 (42%), Gaps = 153/612 (25%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M+ +   L  LLQSC T+ S+   K +H    +  + + T  + N L+ +Y +C   T A
Sbjct: 1   MEVKSLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTF-LCNHLIDLYSKCNQITSA 59

Query: 61  LLLFDEMPRRNCFSW-------------------------------NAMIEGFMKLGHKE 89
             +FD++P +N FS+                               N +I   +K G++ 
Sbjct: 60  HHVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYER 119

Query: 90  KSLQLFNVM-------PQ---------------------------------KNDFSWNML 109
           ++L  +++M       P                                   N +  N L
Sbjct: 120 QALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNAL 179

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +  + K G  + A  +F  +   N + + +M+    +    +E + LF+ +   L + + 
Sbjct: 180 LCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLM---LRKGIC 236

Query: 170 CDAFILATVI---------GACAD---LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
            D+  L+T++         G C D   L+    GKQIH+  + +G + D  L +SL+++Y
Sbjct: 237 VDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMY 296

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYAN----------------CGKMND----- 256
            K GD +SA  V   + +      + +ISGY N                CG   D     
Sbjct: 297 AKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYI 356

Query: 257 --------------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                          R++FD  +  S + WN+++SGY  + +  EA+ LF KM+      
Sbjct: 357 NMLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNP 416

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D +TLA +LS+C+ LG LE GKQVH  + K+G  DDV VAS+L                 
Sbjct: 417 DRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSL----------------- 459

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                         I VYS CG++E +KH+F  +    ++ WNSMI G S N    +AL 
Sbjct: 460 --------------INVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALA 505

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
            F  M +      +FS A++ S+CA +SSL  G+Q+ A++   G   +  + +SLV+ YC
Sbjct: 506 CFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYC 565

Query: 483 KCGFIKMDEYYL 494
           KCG +    YY 
Sbjct: 566 KCGDVGAARYYF 577



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 217/441 (49%), Gaps = 70/441 (15%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ+H   +K G     L + N LL MY + G+   A  +F+ + + +  SWN MI G+ 
Sbjct: 270 GKQIHTLAVKHG-FERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYG 328

Query: 84  KLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                EK+L+ F  M     + +D ++  +++   K+G++K  R +F+ M   + I+WN+
Sbjct: 329 NRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNA 388

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           ++  Y ++    EAV LF+++     +    D   LA ++ +CA+L  LE GKQ+H+   
Sbjct: 389 ILSGYNQSADHGEAVELFRKMQ---FQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQ 445

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             G   D  + SSL+N+Y K                               CGKM  ++ 
Sbjct: 446 KLGFYDDVYVASSLINVYSK-------------------------------CGKMEVSKH 474

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF + ++   V WNSMI+G+  N+ + +AL  F +MR+ G      + A++ S+C+ L  
Sbjct: 475 VFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSS 534

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G+Q+H    K G +D+V V S+L++ Y K                            
Sbjct: 535 LFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCK---------------------------- 566

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              CG +  A++ F  MP K++++WN MI G + NG  +EA+ L+ +M     + D  + 
Sbjct: 567 ---CGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITF 623

Query: 440 ASVISACANISSLELGEQVFA 460
            +V++AC++ + ++ G ++F+
Sbjct: 624 VAVLTACSHSALVDEGVEIFS 644



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 124/286 (43%), Gaps = 37/286 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +  SC    S+  G+Q+H   +K G +++   + + L++MY +CG+   A   FD M
Sbjct: 522 FATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVF-VGSSLVEMYCKCGDVGAARYYFDMM 580

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P +N  +WN MI G+   G+  +++ L+  M     + +D ++  +++  + +  +    
Sbjct: 581 PGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGV 640

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F+ M ++  +      +  +I C  R G   E   +   +        + D  +   V
Sbjct: 641 EIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTM------PYKDDTIVWEVV 694

Query: 179 IGACADLAALEYGKQIHS--HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM--- 233
           + +C   A +   K+     H L        VL   L N+Y   G ++ A  V ++M   
Sbjct: 695 LSSCRVHANVSLAKRAAEELHRLNPRNSAPYVL---LANMYSSMGRWDDAQVVRDLMSDN 751

Query: 234 ---KEPD------DFCLSALISGYANC----GKMNDARRVFDRTTD 266
              K+P        + +    S +AN     G ++DA+ V D T+D
Sbjct: 752 QIHKDPGYSRSEFKYDVQNKTSFFANMYSCFGNLDDAQFVRDLTSD 797


>gi|296082479|emb|CBI21484.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 227/472 (48%), Gaps = 76/472 (16%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
            GK +H   +K G L+  + + N L+  Y + G   DA  +FDEM               
Sbjct: 31  TGKSIHARIIKAG-LHLGVFLMNNLMNFYAKTGFIYDAHRVFDEM--------------- 74

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                           P K+ FSWN+++SG+AK G L+ A  +F +MP  ++++W +MI 
Sbjct: 75  ----------------PVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIV 118

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y + G    A+ +F+E+ SD V   Q   F L  V+ +CA +  L  G+++HS ++ +G
Sbjct: 119 GYNQMGQFENAIGMFREMVSDDVPPTQ---FTLTNVLASCAAVECLGIGRKVHSFVVKHG 175

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L     + +SL+N+Y K GD  +A  V + MK       +AL+ GY   G +N ARR+FD
Sbjct: 176 LSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSTFTALLDGYVKLGDINPARRIFD 235

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                  V W +MI GY+ N  + +A+ LF  M + G   +  TLA++LS  SSL  L+H
Sbjct: 236 SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDH 295

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+Q+H  A + G    V V++AL+  Y+K                               
Sbjct: 296 GRQIHASATRSGNASSVSVSNALITMYAK------------------------------- 324

Query: 383 CGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNM--------NKLDLR 433
            G I DA+ +F  +   +  I+W SMI+ L+Q+G   EAL LF  M          + + 
Sbjct: 325 SGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENAHAFIENMPIE 384

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            D  +  S++++C    ++EL E    R+ +I  ++    S +L + Y  CG
Sbjct: 385 PDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYS-ALANVYSACG 435



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 165/297 (55%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH+ I+  GL     L ++L+N Y K G    A++V + M     F  + ++SGYA 
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G++ +A RVF+   +  SV W +MI GY    +   A+ +F +M  + V     TL +V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L++C+++  L  G++VH    K G+   + VA++LL+ Y+K G P  A  +F  +K+  T
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                ++  Y   G I  A+ IF ++  + +++W +MIVG  QNG   +A++LF +M K 
Sbjct: 212 STFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKE 271

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             + + ++LA+++S  ++++SL+ G Q+ A  T  G  S   +S +L+  Y K G I
Sbjct: 272 GPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSI 328



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 176/397 (44%), Gaps = 95/397 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC     + +G+++H   +K G L+S + +AN LL MY + G+P  A ++FD M
Sbjct: 148 LTNVLASCAAVECLGIGRKVHSFVVKHG-LSSYISVANSLLNMYAKSGDPVTAKIVFDRM 206

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  ++ A+++G++KLG    + ++F+ +  ++  +W  +I G               
Sbjct: 207 KLKSTSTFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVG--------------- 251

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                           YV+NGF ++A+ LF+ +   + E  + + + LAT++   + LA+
Sbjct: 252 ----------------YVQNGFNQDAMELFRSM---IKEGPKPNNYTLATMLSVSSSLAS 292

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L++G+QIH+    +G      + ++L+ +Y K G  N A  V N++    D         
Sbjct: 293 LDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRD--------- 343

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                                ++ W SMI     +    EAL LF +M     LE+A   
Sbjct: 344 ---------------------TITWTSMIIALAQHGLGEEALTLFERM-----LENAH-- 375

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL---DTYSKRGMPSDACKLFSE 364
                      F+E+          + +  DVI   +LL     +    +   A +    
Sbjct: 376 ----------AFIEN----------MPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLL 415

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           ++  ++   + +  VYS+CG+ E+A +I ++M +K +
Sbjct: 416 IEPENSGAYSALANVYSACGQWENAANIRKSMKDKGV 452


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 201/402 (50%), Gaps = 39/402 (9%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +P    F  N++I  + +LG      + F+ +P K+  SW M+ISG AK G L  AR L 
Sbjct: 138 LPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLL 197

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
              P R+ I+W S+I  Y R   A+EAV  FK +   L E +  D   +  V+ AC+ L 
Sbjct: 198 AQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM---LSEGIAPDDVTVIGVLSACSQLK 254

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSA 243
            LE G  +HS +   G+     L  +L+++Y KCGDF  A +V + +   + P  +  +A
Sbjct: 255 DLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSW--NA 312

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I GY   G ++ AR +FD+      + +NSMI+GYI + +  EALLLF  MRR+ +  D
Sbjct: 313 IIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVD 372

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T+ S+LSAC+SLG L  G+ +H       V  D+ + +ALLD Y K            
Sbjct: 373 NFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMK------------ 420

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CGR+ +A  +F+ M  + + +W +MI GL+ NG     L+ 
Sbjct: 421 -------------------CGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEY 461

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           F  M     + +  S  +V++AC++   L  G   F  + I+
Sbjct: 462 FYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRIL 503



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 204/478 (42%), Gaps = 68/478 (14%)

Query: 17  THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
           T  ++    +LH H    G L    P A+ LL   + C  P+D L               
Sbjct: 8   TPRTVRQAAELHAHLTTSGRLLHP-PSAHHLLNSLVNCLPPSDPL--------------- 51

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
                     H   +L LF+ MP      D +          +G+      LF  M RR 
Sbjct: 52  ----------HLRYALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRM-RRA 100

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD---AFILATVIGACADLAALEY 190
           A+           +GF      LFK  +S     L C    A  L T++ + A   A   
Sbjct: 101 AVR---------PDGFTFHF--LFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVA--- 146

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
                               +SL+++Y + G      +  + +   D    + +ISG A 
Sbjct: 147 --------------------NSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAK 186

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G ++DAR +  +      + W S+I+ Y   +   EA+  F  M   G+  D  T+  V
Sbjct: 187 MGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGV 246

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYD 369
           LSACS L  LE G  +H    + G+     +  AL+D Y+K G    A ++F  + +   
Sbjct: 247 LSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRR 306

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
               N +I  Y   G ++ A+ +F  M  + +I++NSMI G   +G   EAL LF NM +
Sbjct: 307 PQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRR 366

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            DLR+D F++ S++SACA++ +L  G  + A + +  +++D  I T+L+D Y KCG +
Sbjct: 367 HDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 424



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 155/348 (44%), Gaps = 77/348 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L +C+    + +G  LH    +KG+ ++  L +A  L+ MY +CG+   A  +FD + R
Sbjct: 246 VLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVA--LIDMYAKCGDFGHAREVFDAVGR 303

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
                           G +          PQ    SWN +I G+ K G +  AR+LF+ M
Sbjct: 304 ----------------GRR----------PQ----SWNAIIDGYCKHGHVDVARSLFDQM 333

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
             R+ I +NSMI  Y+ +G  REA+ LF  +       L+ D F + +++ ACA L AL 
Sbjct: 334 EVRDIITFNSMITGYIHSGQLREALLLFMNMRR---HDLRVDNFTVVSLLSACASLGALP 390

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G+ +H+ I +  ++ D  +G++L+++Y K                              
Sbjct: 391 QGRALHACIELRLVETDIYIGTALLDMYMK------------------------------ 420

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CG++N+A  VF R        W +MI+G   N      L  F++MR +G   +  +  +
Sbjct: 421 -CGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIA 479

Query: 310 VLSACSSLGFLEHGK----------QVHGHACKVGVIDDVIVASALLD 347
           VL+ACS    L  G+           +H      G + D++  S LLD
Sbjct: 480 VLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 527



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/528 (21%), Positives = 205/528 (38%), Gaps = 105/528 (19%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R+D   +  LL +C +  ++  G+ LH   ++  ++ + + I   LL MYM+CG   +
Sbjct: 368 DLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDIYIGTALLDMYMKCGRVNE 426

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK 115
           A ++F  M +R+  +W AMI G    G  +  L+ F  M     Q N  S+  +++  + 
Sbjct: 427 ATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSH 486

Query: 116 AGELKTARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +  L   R  F++M     I      +  MI    R+G   EA+ L K +       +Q 
Sbjct: 487 SCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP------MQP 540

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---FNSAN 227
           ++ I A+++ AC     ++  +    H+L    D D+V     V LY  C D   +  A+
Sbjct: 541 NSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAV----YVQLYNICIDSRKWEDAS 596

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           ++  +M+E                       R   +T   SSV     +  ++ +++   
Sbjct: 597 KIRMLMEE-----------------------RQVKKTAGYSSVTVAGQVHKFVVSDKS-- 631

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
                       +LE  + L  +     S G+     QV         +D+      LL 
Sbjct: 632 ---------HPRILEIIAMLEEISHRLKSAGYSPITSQV------TVDVDEEEKEQTLLA 676

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG-----------RI--------ED 388
              K  +      L   L V+  I+ N   T++   G           R+         D
Sbjct: 677 HSEKLAIAFGLVSLAPNLPVH--IIKNLRPTIFRPLGADDGKQKQPDRRVVFLLPPSRRD 734

Query: 389 AKHIFRTMPN---------------KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           A  + R +P+               + + S N MI G  ++G    A  ++  M    +R
Sbjct: 735 APVLVRPIPSSPAPFSLRSSVTMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIR 794

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
               + ++++  C+   +L    Q+  RV  +GL  +  + ++LV+ Y
Sbjct: 795 ETPHTFSTILGVCSTYEAL----QLHGRVLALGLCCNPFVGSALVNHY 838



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 197/496 (39%), Gaps = 61/496 (12%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +L  C+T+ ++    QLH   L  G+  +   + + L+  YM   +P  +L LF E+P +
Sbjct: 803  ILGVCSTYEAL----QLHGRVLALGLCCNPF-VGSALVNHYMHVESPHASLSLFRELPLQ 857

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGE-LKTARTL 125
            N    N ++ G   L   E+ +  F  M ++    N  S+   + G  + GE L+  R L
Sbjct: 858  NTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQL 917

Query: 126  FNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
               + +      N    NS++  Y   G   ++V   K LN  L E    D     +++ 
Sbjct: 918  HGVVLKAGWIPSNIFLSNSLVDLYSAIG---DSVDTVKALNDILSE----DVISWNSILS 970

Query: 181  ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
              AD   ++        +L +G         SL+ L GK GD+    Q+  ++ +    C
Sbjct: 971  MYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSC 1030

Query: 241  LS-----ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
             S      LI  Y  C   + +  +F+     +    NS+I+  +  N    AL + H M
Sbjct: 1031 SSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCM 1090

Query: 296  RRNGVLEDASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
               GV  D  T ++ + A   S+   L   + +H    K+G   D+ V S+L        
Sbjct: 1091 IVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSL-------- 1142

Query: 354  MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                   IT Y+  G++  +  IF  + + ++I + ++I   ++
Sbjct: 1143 -----------------------ITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACAR 1179

Query: 414  NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQI 472
             G    A++LF  M    L+ D  +    I+ C      E G  V   +     LD D+ 
Sbjct: 1180 YGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDER 1239

Query: 473  ISTSLVDFYCKCGFIK 488
                +V+   + GF+K
Sbjct: 1240 HFACMVNLLSRDGFVK 1255



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 37/215 (17%)

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N MI+G+I +     A  ++  M  +G+ E   T +++L  CS+   L    Q+HG    
Sbjct: 766 NRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL----QLHGRVLA 821

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  +  V SAL++ Y     P  +  LF EL + +T + N                 +
Sbjct: 822 LGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNV----------------V 865

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC-ANISS 451
            R + N  L                 E +  F +M +  L ++  S    +  C  N   
Sbjct: 866 LRGLGNLKLTE---------------ELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEW 910

Query: 452 LELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCG 485
           LE G Q+   V   G + S+  +S SLVD Y   G
Sbjct: 911 LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIG 945



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 96/252 (38%), Gaps = 45/252 (17%)

Query: 22   HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
             +G Q+H    K G   S++ +   L+ MY +C     +L +F+E+P       N++I  
Sbjct: 1014 QLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITS 1073

Query: 82   FMKLGHKEKSLQLFNVM------PQKNDFSWNM--------------------------- 108
             ++    + +L++ + M      P    FS  M                           
Sbjct: 1074 SLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFE 1133

Query: 109  --------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                    LI+ +A AG+L ++  +F  +   N I + ++I    R G    A+ LF ++
Sbjct: 1134 MDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQM 1193

Query: 161  NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGK 219
             S     L+ D       I  C      E G+ +   +  +  LD D    + +VNL  +
Sbjct: 1194 VS---SGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSR 1250

Query: 220  CGDFNSANQVLN 231
             G    A +++ 
Sbjct: 1251 DGFVKEAMEMME 1262


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 224/495 (45%), Gaps = 109/495 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEM 67
           A LLQ+C    + + G Q+H H +K G+      + N LL +Y + G    +   +FD +
Sbjct: 122 ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF-VGNSLLTLYFKLGTDFPETRKVFDGL 180

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELK--- 120
             ++  SW +MI G++++G    SL+LF  M     + N F+ + +I   ++ G+LK   
Sbjct: 181 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGR 240

Query: 121 --------------------------------TARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                            AR LF+++   +AI W S+I    RN 
Sbjct: 241 IFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRND 300

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+R F  +  D    +  D F   TV+ AC +L  L+ GK++H+ ++  G   + V
Sbjct: 301 FFDEALRFFYSMQRD--HGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVV 358

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + SSLV++YGK                               CG + +++R+FDR    +
Sbjct: 359 VESSLVDMYGK-------------------------------CGSVGESQRIFDRMPIKN 387

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV W++++ GY  N +    + +F KM +     D     ++L  C+ L  +  GK+VH 
Sbjct: 388 SVSWSALLGGYCQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHC 443

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              + G   DVIV SAL+D Y+K                               CG IE 
Sbjct: 444 QYIRKGGWRDVIVESALVDLYAK-------------------------------CGCIEY 472

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ IF  MP ++LI+WNSMI G +QNG   EAL +F  M K  ++ D  S   ++ AC++
Sbjct: 473 AQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSH 532

Query: 449 ISSLELGEQVFARVT 463
              ++ G + F  +T
Sbjct: 533 RGLVDEGREYFISMT 547



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 161/346 (46%), Gaps = 71/346 (20%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G    A++L K ++      +     + A+++  C  + A  +G QIH+H++ +GL+F
Sbjct: 95  KSGELSGALQLLKSIDPG---EISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEF 151

Query: 206 DSVLGSSLVNLYGKCG-DFNSANQVLNMMKEPDDFCLSALISGYANCGK-MNDARRVFDR 263
           D  +G+SL+ LY K G DF    +V + +   D    +++ISGY   GK MN        
Sbjct: 152 DRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMN-------- 203

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                                   +L LF KM   GV  +A TL++V+ ACS LG L+ G
Sbjct: 204 ------------------------SLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 239

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +  HG     G   + ++ASAL+D + +     DA +LF EL   D              
Sbjct: 240 RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDA------------- 286

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM--DKFSLAS 441
                             I W S+I  L++N    EAL  F +M + D  M  D F+  +
Sbjct: 287 ------------------ICWTSIISALTRNDFFDEALRFFYSMQR-DHGMCPDGFTFGT 327

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           V++AC N+  L+ G++V A+V   G   + ++ +SLVD Y KCG +
Sbjct: 328 VLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSV 373



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 47/296 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +  GK++H   +  G   + + + + L+ MY +CG+  ++  +FD MP +
Sbjct: 328 VLTACGNLGRLKQGKEVHAKVITTGFCGNVV-VESSLVDMYGKCGSVGESQRIFDRMPIK 386

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-------------------------- 104
           N  SW+A++ G+ + G  +  +Q+F  M + + +                          
Sbjct: 387 NSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYI 446

Query: 105 ---SW------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
               W      + L+  +AK G ++ A+T+F+ MP RN I WNSMI  + +NG   EA+R
Sbjct: 447 RKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALR 506

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG----S 211
           +F ++   + E ++ D      ++ AC+    ++ G++   + +    D+   +G    S
Sbjct: 507 IFNQM---VKEGIKPDYISFIGILFACSHRGLVDEGRE---YFISMTKDYGIKVGIEHYS 560

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTD 266
            +V+L G+ G    A  ++      DD  L +AL+     C     A R+  R  +
Sbjct: 561 CMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVME 616



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 21/236 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  GK++H  +++KG     + + + L+ +Y +CG    A  +FD+MP R
Sbjct: 425 ILRTCAGLAAVRQGKEVHCQYIRKGGWRDVI-VESALVDLYAKCGCIEYAQTIFDQMPVR 483

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTARTLF 126
           N  +WN+MI GF + G  E++L++FN M +   K D+ S+  ++   +  G +   R  F
Sbjct: 484 NLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYF 543

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M +   I      ++ M+    R G   EA  L +   SD  +    D+ + A ++GA
Sbjct: 544 ISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIE--TSDFRD----DSSLWAALLGA 597

Query: 182 CADLAALEYGKQIHSHILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C      E  ++I   ++    D+    VL   L N+Y   G +N A ++  +MK+
Sbjct: 598 CTTCTNYEIAERIAKRVMELEPDYHLSYVL---LANVYKAVGRWNDALRIRRLMKD 650


>gi|413918391|gb|AFW58323.1| hypothetical protein ZEAMMB73_367038 [Zea mays]
          Length = 711

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 227/481 (47%), Gaps = 76/481 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVM 98
           NR ++    CG+  DA  +FD MPRR+  SWNA+I    + GH  ++  LF       + 
Sbjct: 87  NRAIECLAACGSLADAREMFDAMPRRDGGSWNAIISASSRAGHPAEAFSLFADMNSLGIR 146

Query: 99  PQ----------------------------KNDFSWNM-----LISGFAKAGELKTARTL 125
           P+                            K DF  N+     L+  + K   L   R  
Sbjct: 147 PKDVTLASVLACCAECLDLRGAQQLHGLIAKRDFQSNVILGTALVDVYGKCLSLTDVRRA 206

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+D+ + N ++WN +I  Y   G    A+ +F  +    V  L    + +A  + AC D 
Sbjct: 207 FDDILQPNDVSWNIIIRRYRLAGMGDMALHMFFMMVRAGVRPL---VYTVAHAMLACRDN 263

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            AL+ GK IHS +L  G D      SS+V++Y KCGD ++A ++ N+  + D    ++++
Sbjct: 264 CALKEGKCIHSFVLRRGYDHHIHARSSVVDMYAKCGDIDAAQRLFNLAPKKDVVMSTSVV 323

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           SG A CG++ DA+ VFD     + V WN+M++GY+ + + T AL LF +MR      D  
Sbjct: 324 SGLAACGRIADAKMVFDGMEQHNLVSWNAMLTGYVKSMDLTGALDLFQQMRHETKELDVV 383

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TLASVL+AC+ L  L  G+++H  A K G+                      +C  F   
Sbjct: 384 TLASVLNACTGLLDLGKGEELHALALKCGLF---------------------SCPFFR-- 420

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHI--FRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                   N ++ +YS CG +  AK +  F     +   +WNS+I G  ++    +AL  
Sbjct: 421 --------NALVRLYSKCGCLRTAKRLLLFEMGSERDRYAWNSIISGYERHSMSEDALHA 472

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
              M   + +  + + +S ++ACANI  L+ G+Q+ A +     D D I+ ++LVD Y K
Sbjct: 473 LREMQS-EAKPSQSTFSSALAACANIFLLKHGKQIHAYMIRNRYDIDDILRSALVDMYSK 531

Query: 484 C 484
           C
Sbjct: 532 C 532



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/392 (30%), Positives = 185/392 (47%), Gaps = 34/392 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F +N  I   A  G L  AR +F+ MPRR+  +WN++I    R G   EA  LF ++NS 
Sbjct: 84  FLFNRAIECLAACGSLADAREMFDAMPRRDGGSWNAIISASSRAGHPAEAFSLFADMNS- 142

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               ++     LA+V+  CA+   L   +Q+H  I       + +LG++LV++YGK    
Sbjct: 143 --LGIRPKDVTLASVLACCAECLDLRGAQQLHGLIAKRDFQSNVILGTALVDVYGK---- 196

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                           CLS           + D RR FD     + V WN +I  Y    
Sbjct: 197 ----------------CLS-----------LTDVRRAFDDILQPNDVSWNIIIRRYRLAG 229

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
               AL +F  M R GV     T+A  + AC     L+ GK +H    + G    +   S
Sbjct: 230 MGDMALHMFFMMVRAGVRPLVYTVAHAMLACRDNCALKEGKCIHSFVLRRGYDHHIHARS 289

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +++D Y+K G    A +LF+     D ++  ++++  ++CGRI DAK +F  M   +L+S
Sbjct: 290 SVVDMYAKCGDIDAAQRLFNLAPKKDVVMSTSVVSGLAACGRIADAKMVFDGMEQHNLVS 349

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+M+ G  ++     ALDLF  M      +D  +LASV++AC  +  L  GE++ A   
Sbjct: 350 WNAMLTGYVKSMDLTGALDLFQQMRHETKELDVVTLASVLNACTGLLDLGKGEELHALAL 409

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
             GL S      +LV  Y KCG ++  +  L+
Sbjct: 410 KCGLFSCPFFRNALVRLYSKCGCLRTAKRLLL 441



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 68/386 (17%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           +++++ + K G  + + +LFN+ P+K+      ++SG A  G +  A+ +F+ M + N +
Sbjct: 289 SSVVDMYAKCGDIDAAQRLFNLAPKKDVVMSTSVVSGLAACGRIADAKMVFDGMEQHNLV 348

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+M+  YV++     A+ LF+++     E  + D   LA+V+ AC  L  L  G+++H
Sbjct: 349 SWNAMLTGYVKSMDLTGALDLFQQMRH---ETKELDVVTLASVLNACTGLLDLGKGEELH 405

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L                   KCG F+              F  +AL+  Y+ CG + 
Sbjct: 406 ALAL-------------------KCGLFSCP------------FFRNALVRLYSKCGCLR 434

Query: 256 DARRV--FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
            A+R+  F+  ++     WNS+ISGY  ++   +AL    +M+        ST +S L+A
Sbjct: 435 TAKRLLLFEMGSERDRYAWNSIISGYERHSMSEDALHALREMQSEAK-PSQSTFSSALAA 493

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+++  L+HGKQ+H +  +     D I+ SAL+D YSK       C+LF           
Sbjct: 494 CANIFLLKHGKQIHAYMIRNRYDIDDILRSALVDMYSK-------CRLFD---------- 536

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                 YS+         IF    +  +I WNSMI   + +      L L   M K  +R
Sbjct: 537 ------YST--------RIFELGSSDDVILWNSMIFACAYHSKGDYGLGLLDEMRKQGVR 582

Query: 434 MDKFSLASVISACANISSLELGEQVF 459
            D  +    + +C     + LG   F
Sbjct: 583 PDSVTFLGALVSCICEGHVGLGRSYF 608



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 133/312 (42%), Gaps = 76/312 (24%)

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---------- 103
           CG   DA ++FD M + N  SWNAM+ G++K      +L LF  M  +            
Sbjct: 329 CGRIADAKMVFDGMEQHNLVSWNAMLTGYVKSMDLTGALDLFQQMRHETKELDVVTLASV 388

Query: 104 -----------------------------FSWNMLISGFAKAGELKTARTL--FNDMPRR 132
                                        F  N L+  ++K G L+TA+ L  F     R
Sbjct: 389 LNACTGLLDLGKGEELHALALKCGLFSCPFFRNALVRLYSKCGCLRTAKRLLLFEMGSER 448

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +  AWNS+I  Y R+  + +A+   +E+ S+     +      ++ + ACA++  L++GK
Sbjct: 449 DRYAWNSIISGYERHSMSEDALHALREMQSEA----KPSQSTFSSALAACANIFLLKHGK 504

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH++++ N  D D +L S+LV++Y KC  F+ +                          
Sbjct: 505 QIHAYMIRNRYDIDDILRSALVDMYSKCRLFDYST------------------------- 539

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                 R+F+  +    ++WNSMI     +++    L L  +MR+ GV  D+ T    L 
Sbjct: 540 ------RIFELGSSDDVILWNSMIFACAYHSKGDYGLGLLDEMRKQGVRPDSVTFLGALV 593

Query: 313 ACSSLGFLEHGK 324
           +C   G +  G+
Sbjct: 594 SCICEGHVGLGR 605



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 63/115 (54%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T L N  I   ++CG + DA+ +F  MP +   SWN++I   S+ G P EA  LF +MN 
Sbjct: 83  TFLFNRAIECLAACGSLADAREMFDAMPRRDGGSWNAIISASSRAGHPAEAFSLFADMNS 142

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           L +R    +LASV++ CA    L   +Q+   +      S+ I+ T+LVD Y KC
Sbjct: 143 LGIRPKDVTLASVLACCAECLDLRGAQQLHGLIAKRDFQSNVILGTALVDVYGKC 197


>gi|7262690|gb|AAF43948.1|AC012188_25 Contains similarity to a hypothetical protein from Arabidopsis
           thaliana gb|AC004044.1 and contains two domains PF|01535
           of unknown function [Arabidopsis thaliana]
          Length = 455

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 221/422 (52%), Gaps = 36/422 (8%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           + N ++ MY++  +   A  +FD++ +R    WN MI G+ K G+KE++ +LF++MP+ +
Sbjct: 53  VRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPEND 112

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             SW ++I+GFAK  +L+ AR  F+ MP ++ ++WN+M+  Y +NGF  +A+RLF ++  
Sbjct: 113 VVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDM-- 170

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
            L   ++ +      VI AC+  A     + +   I    +  +  + ++L++++ KC D
Sbjct: 171 -LRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRD 229

Query: 223 FNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
             SA ++ N +    +    +A+ISGY   G M+ AR++FD     + V WNS+I+GY  
Sbjct: 230 IQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAH 289

Query: 282 NNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
           N +   A+  F  M   G    D  T+ SVLSAC  +  LE G              D I
Sbjct: 290 NGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELG--------------DCI 335

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V       Y ++          +++K+ D+    ++I +Y+  G + +AK +F  M  + 
Sbjct: 336 V------DYIRK----------NQIKLNDS-GYRSLIFMYARGGNLWEAKRVFDEMKERD 378

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           ++S+N++    + NG  +E L+L   M    +  D+ +  SV++AC     L+ G+++F 
Sbjct: 379 VVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFK 438

Query: 461 RV 462
            +
Sbjct: 439 SI 440



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 53/346 (15%)

Query: 150 AREAVRLFKELNSDLVERLQC----DAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           A + +RL+++       R +C    DAF    VI +      L          LV  L F
Sbjct: 2   ANDVLRLYEQ-------RSRCGIMPDAFSFPVVIKSAGRFGIL-------FQALVEKLGF 47

Query: 206 --DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             D  + + ++++Y K     SA +V + + +      + +ISGY   G   +A ++FD 
Sbjct: 48  FKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDM 107

Query: 264 TTDTSSVMWNSMI-------------------------------SGYISNNEDTEALLLF 292
             +   V W  MI                               SGY  N    +AL LF
Sbjct: 108 MPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLF 167

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           + M R GV  + +T   V+SACS        + +     +  V  +  V +ALLD ++K 
Sbjct: 168 NDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKC 227

Query: 353 GMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                A ++F+EL    + +  N MI+ Y+  G +  A+ +F TMP ++++SWNS+I G 
Sbjct: 228 RDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGY 287

Query: 412 SQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGE 456
           + NG    A++ F +M +  D + D+ ++ SV+SAC +++ LELG+
Sbjct: 288 AHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGD 333



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 36/229 (15%)

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           + L L+ +  R G++ DA +   V+ +    G L           K+G   D  V + ++
Sbjct: 4   DVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGIL-----FQALVEKLGFFKDPYVRNVIM 58

Query: 347 DTYSKR-------------------------------GMPSDACKLFSELKVYDTILLNT 375
           D Y K                                G   +ACKLF  +   D +    
Sbjct: 59  DMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPENDVVSWTV 118

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           MIT ++    +E+A+  F  MP KS++SWN+M+ G +QNG   +AL LF +M +L +R +
Sbjct: 119 MITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPN 178

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           + +   VISAC+  +   L   +   +    +  +  + T+L+D + KC
Sbjct: 179 ETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKC 227


>gi|5803274|dbj|BAA83584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|55296350|dbj|BAD68395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596022|gb|EAZ35802.1| hypothetical protein OsJ_20095 [Oryza sativa Japonica Group]
          Length = 763

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 239/477 (50%), Gaps = 18/477 (3%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +G+ +H   + K   +  + +   L+ MY  CG  +    + D +   N
Sbjct: 108 LSACARLEALEMGRCVH-GLVFKSCSSGNVFVGASLITMYANCGVVSCLEQVLDGVESPN 166

Query: 72  CFSWNAMIEGFM---KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
              WNA+I G +   ++G+  K+   F+ MP +N  SW  +I G   A E+  A  LF  
Sbjct: 167 VALWNALISGLVMNHRVGYARKA---FDRMPVRNVVSWTAMIKGHFTAHEVDMAFQLFKL 223

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           MP +N+++W  MI  +V +    EAV LF   NS ++   +    IL  ++ A A + ++
Sbjct: 224 MPVKNSVSWCVMIGGFVTHEKFSEAVELF---NSLMMNGEEVTNVILVKIVNAFAGMKSI 280

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             G+ IH   + +G  +D VL +SLV +Y K  D   A    + M+       +A++ GY
Sbjct: 281 RGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGY 340

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
               K+++AR++FD   +   + WNSMI+GYI++    +A  L+ KM     LE A+ L 
Sbjct: 341 IYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKS-LEAATAL- 398

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
             +S     G L+  + +  +  ++    DV+  + LL  Y K G   DA  LF  ++  
Sbjct: 399 --MSWFIDNGMLDKARDMFYNMPQI----DVMSCTTLLFGYVKGGHMDDALDLFHMMQKR 452

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
             +  N MI+     G+I +A  +F   P +  ++W+ ++ GL+ NG   EAL  +  M 
Sbjct: 453 TVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKML 512

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             ++R  +  ++S+IS  +N S +  G+Q  A    IGLDS  +I  SL+  YCKCG
Sbjct: 513 LSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYCKCG 569



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 204/423 (48%), Gaps = 44/423 (10%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++   +AG L+ AR +F+ MPRR+ ++WN+++    R G    AV  F E+     +
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRR---Q 95

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + D    +T + ACA L ALE G+ +H  +  +    +  +G+SL+ +Y  CG  +  
Sbjct: 96  GFRPDHTSFSTALSACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCGVVSCL 155

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS------------ 274
            QVL+ ++ P+    +ALISG     ++  AR+ FDR    + V W +            
Sbjct: 156 EQVLDGVESPNVALWNALISGLVMNHRVGYARKAFDRMPVRNVVSWTAMIKGHFTAHEVD 215

Query: 275 -------------------MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                              MI G++++ + +EA+ LF+ +  NG       L  +++A +
Sbjct: 216 MAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFA 275

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            +  +  G+ +HG A K G   D+++ ++L+  Y K    ++A   F +++       N 
Sbjct: 276 GMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNA 335

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           M+  Y    +I++A+ +F +M N+  ISWNSMI G   +G   +A +L+  M +  L   
Sbjct: 336 MLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLE-- 393

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI--KMDEYY 493
             +  +++S   +   L+    +F  +  I    D +  T+L+  Y K G +   +D ++
Sbjct: 394 --AATALMSWFIDNGMLDKARDMFYNMPQI----DVMSCTTLLFGYVKGGHMDDALDLFH 447

Query: 494 LMQ 496
           +MQ
Sbjct: 448 MMQ 450



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 220/485 (45%), Gaps = 75/485 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L +++ +     SI  G+ +H   +K G     L +   L+ MY +  + T+A L FD+M
Sbjct: 267 LVKIVNAFAGMKSIRGGRCIHGLAVKSG-FAYDLVLEASLVLMYCKSLDITEARLEFDKM 325

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              +  SWNA                               ++ G+  + ++  AR LF+
Sbjct: 326 EGNHVGSWNA-------------------------------MLCGYIYSDKIDEARKLFD 354

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  R+ I+WNSMI+ Y+ +G   +A  L+ ++     + L+    +++  I    D   
Sbjct: 355 SMNNRDKISWNSMINGYINDGRIADATELYSKMTE---KSLEAATALMSWFI----DNGM 407

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L+  + +      N    D +  ++L+  Y K G  + A  + +MM++      + +ISG
Sbjct: 408 LDKARDM----FYNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISG 463

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
             + GK+ +A ++F+ +    SV W+ +++G  +N    EAL  + KM  + +    S +
Sbjct: 464 LFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSESVV 523

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +S++S  S+   + HG+Q H    K+G           LD++                  
Sbjct: 524 SSLISCLSNYSMMVHGQQFHATTIKIG-----------LDSH------------------ 554

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
              ++ N++I++Y  CG +  A+ IF  M  +  ++WN++I G + N     A+++F +M
Sbjct: 555 --LLIQNSLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESM 612

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGF 486
            K  +  D  +   V+SAC ++S LE  +  F  +T   G+  + +    +VD +C+   
Sbjct: 613 TKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCM 672

Query: 487 IKMDE 491
           IK  E
Sbjct: 673 IKEAE 677



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 17/181 (9%)

Query: 12  LQSCNTHHSIHV-GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L SC +++S+ V G+Q H   +K G L+S L I N L+ +Y +CG    A  +FD M +R
Sbjct: 526 LISCLSNYSMMVHGQQFHATTIKIG-LDSHLLIQNSLISLYCKCGEMIIAQSIFDLMAKR 584

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           +  +WN +I G+      + ++++F  M +     +D ++  ++S       L+ A+  F
Sbjct: 585 DKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFF 644

Query: 127 NDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M        N + +  M+  + R    +EA  L K +        + D+ I  +++  
Sbjct: 645 NAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLVKSM------PFEPDSAIWTSLLSG 698

Query: 182 C 182
           C
Sbjct: 699 C 699


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 224/433 (51%), Gaps = 44/433 (10%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR----RNCFSWNAMIEGF-----MKLG 86
           + + +L + N +++MY + G     LLLF ++       + F++  +++       ++ G
Sbjct: 203 VQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQG 262

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
            K +   +   M   N + +N LI  + +   ++ A+ LF++M  R++++WN MI  YVR
Sbjct: 263 EKVRGFIVKTGMDLDN-YVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 321

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
                +A+  F+E+  +  E+   D   + + + AC  L  LE G +IH+++    L F 
Sbjct: 322 CRRFEDAINTFREMQQEGNEKP--DEATVVSTLSACTALKNLELGDEIHNYVR-KELGFT 378

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           + + ++L+++Y KCG  N A  + + M   +  C +++ISGY NCG + +AR +FD++  
Sbjct: 379 TRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPV 438

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V+W +MI+GY+  +   +A+ LF +M+   V  D  T+ ++L+ C+ LG LE GK +
Sbjct: 439 RDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWI 498

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG+  +  +  DV+V +AL++ YSK                               CG +
Sbjct: 499 HGYLDENRITMDVVVGTALIEMYSK-------------------------------CGCV 527

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + +  IF  + +K   SW S+I GL+ NG   EAL LF  M ++  + D  +   V+SAC
Sbjct: 528 DKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSAC 587

Query: 447 ANISSLELGEQVF 459
           ++   +E G + F
Sbjct: 588 SHGGLVEEGRRFF 600



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 205/422 (48%), Gaps = 49/422 (11%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--GELKTARTLFN 127
           RNC S + +         K+   Q+F +  + +  + N L++  A +  G L+ A  +FN
Sbjct: 151 RNCKSMDQL---------KQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFN 201

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +   +   +N M+  Y + G  R+ + LF++L  D    L  D F    V+ A   L  
Sbjct: 202 YVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLRED---GLWPDGFTYPFVLKAIGCLRD 258

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           +  G+++   I+  G+D D+ + +SL+++Y +  +  +A ++ + M   D    + +ISG
Sbjct: 259 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 318

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDAST 306
           Y  C +  D                               A+  F +M++ G    D +T
Sbjct: 319 YVRCRRFED-------------------------------AINTFREMQQEGNEKPDEAT 347

Query: 307 LASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           + S LSAC++L  LE G ++H +  K +G      + +ALLD Y+K G  + A  +F E+
Sbjct: 348 VVSTLSACTALKNLELGDEIHNYVRKELGFT--TRIDNALLDMYAKCGCLNIARNIFDEM 405

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
            + + I   +MI+ Y +CG + +A+ +F   P + ++ W +MI G  Q     +A+ LF 
Sbjct: 406 SMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFR 465

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M    ++ DKF++ ++++ CA + +LE G+ +   +    +  D ++ T+L++ Y KCG
Sbjct: 466 EMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCG 525

Query: 486 FI 487
            +
Sbjct: 526 CV 527



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 190/444 (42%), Gaps = 114/444 (25%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +G ++H +  K+  L  T  I N LL MY +CG    A  +FDEM  +N
Sbjct: 352 LSACTALKNLELGDEIHNYVRKE--LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKN 409

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
              W +MI G++  G   ++  LF+  P ++   W  +I+G                   
Sbjct: 410 VICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMING------------------- 450

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
                       YV+     +AV LF+E+    ++R++ D F + T++  CA L ALE G
Sbjct: 451 ------------YVQFHHFDDAVALFREMQ---IQRVKPDKFTVVTLLTGCAQLGALEQG 495

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K IH ++  N +  D V+G++L+ +Y KCG  + + ++   +++ D    +++I G A  
Sbjct: 496 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 555

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           GK                                +EAL LF +M R G   D  T   VL
Sbjct: 556 GKT-------------------------------SEALRLFSEMERVGAKPDDITFIGVL 584

Query: 312 SACSSLGFLEHG-------KQVHGHACKV---GVIDDVIVASALLDTYSK--RGMPSDAC 359
           SACS  G +E G       K+VH    KV   G + D++  + LLD   +  + +P + C
Sbjct: 585 SACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENC 644

Query: 360 K--------LFSELKVY-------------------DTILLNTMITVYSSCGRIEDAKHI 392
           +        L S  +++                   D+ +   +  +Y+S  R EDAK +
Sbjct: 645 EIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKV 704

Query: 393 FR--------TMPNKSLISWNSMI 408
            R         MP  SLI  + ++
Sbjct: 705 RRKMKELGVKKMPGCSLIEVDGIV 728



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 14/234 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    ++  GK +H  +L +  +   + +   L++MY +CG    +L +F E+  +
Sbjct: 482 LLTGCAQLGALEQGKWIH-GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDK 540

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW ++I G    G   ++L+LF+ M     + +D ++  ++S  +  G ++  R  F
Sbjct: 541 DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFF 600

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M + + I      +  +I    R G   EA  L +E+    +E  +    +   ++ A
Sbjct: 601 NSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIP---IENCEIVVPLYGALLSA 657

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     ++ G+++ +  L N    DS + + L N+Y     +  A +V   MKE
Sbjct: 658 CRIHNNVDMGERL-AKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKE 710


>gi|15223763|ref|NP_172899.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806395|sp|Q9M9R6.2|PPR43_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g14470
 gi|332191047|gb|AEE29168.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 540

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 221/422 (52%), Gaps = 36/422 (8%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           + N ++ MY++  +   A  +FD++ +R    WN MI G+ K G+KE++ +LF++MP+ +
Sbjct: 138 VRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPEND 197

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             SW ++I+GFAK  +L+ AR  F+ MP ++ ++WN+M+  Y +NGF  +A+RLF ++  
Sbjct: 198 VVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDM-- 255

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
            L   ++ +      VI AC+  A     + +   I    +  +  + ++L++++ KC D
Sbjct: 256 -LRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRD 314

Query: 223 FNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
             SA ++ N +    +    +A+ISGY   G M+ AR++FD     + V WNS+I+GY  
Sbjct: 315 IQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAH 374

Query: 282 NNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
           N +   A+  F  M   G    D  T+ SVLSAC  +  LE G              D I
Sbjct: 375 NGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELG--------------DCI 420

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V       Y ++          +++K+ D+    ++I +Y+  G + +AK +F  M  + 
Sbjct: 421 V------DYIRK----------NQIKLNDS-GYRSLIFMYARGGNLWEAKRVFDEMKERD 463

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           ++S+N++    + NG  +E L+L   M    +  D+ +  SV++AC     L+ G+++F 
Sbjct: 464 VVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFK 523

Query: 461 RV 462
            +
Sbjct: 524 SI 525



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 196/405 (48%), Gaps = 35/405 (8%)

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           F +L      L +FN +P+++ ++  ++             R +F+ +   N    NSM 
Sbjct: 19  FPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMF 78

Query: 142 HCYVRNGFAREAVRLFKE-------------------------LNSDLVERLQC--DAFI 174
             + +   A + +RL+++                         L   LVE+L    D ++
Sbjct: 79  KYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGILFQALVEKLGFFKDPYV 138

Query: 175 LATVIGACADLAALEYGKQIHSHI-LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
              ++       ++E  +++   I    G D++ ++       Y K G+   A ++ +MM
Sbjct: 139 RNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISG-----YWKWGNKEEACKLFDMM 193

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            E D    + +I+G+A    + +AR+ FDR  + S V WN+M+SGY  N    +AL LF+
Sbjct: 194 PENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFN 253

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            M R GV  + +T   V+SACS        + +     +  V  +  V +ALLD ++K  
Sbjct: 254 DMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCR 313

Query: 354 MPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
               A ++F+EL    + +  N MI+ Y+  G +  A+ +F TMP ++++SWNS+I G +
Sbjct: 314 DIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYA 373

Query: 413 QNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGE 456
            NG    A++ F +M +  D + D+ ++ SV+SAC +++ LELG+
Sbjct: 374 HNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGD 418



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 36/258 (13%)

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R +FD  T  +  + NSM   +   +   + L L+ +  R G++ DA +   V+ +    
Sbjct: 60  RLIFDSVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRF 119

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR------------------------- 352
           G L           K+G   D  V + ++D Y K                          
Sbjct: 120 GIL-----FQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMI 174

Query: 353 ------GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                 G   +ACKLF  +   D +    MIT ++    +E+A+  F  MP KS++SWN+
Sbjct: 175 SGYWKWGNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNA 234

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           M+ G +QNG   +AL LF +M +L +R ++ +   VISAC+  +   L   +   +    
Sbjct: 235 MLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKR 294

Query: 467 LDSDQIISTSLVDFYCKC 484
           +  +  + T+L+D + KC
Sbjct: 295 VRLNCFVKTALLDMHAKC 312


>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
 gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
          Length = 506

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 185/375 (49%), Gaps = 68/375 (18%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           FAK G LK +R +F+D   ++ + WNSMI  Y ++G  REA+ LFK + S     ++ +A
Sbjct: 2   FAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSS-SPPVEPNA 60

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
               TV+ AC+ + ALE GK++H  ++  G  FD+   +SLVN+Y K             
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAK------------- 107

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                             CG + +AR VFD     + V W  +IS Y+      EAL L+
Sbjct: 108 ------------------CGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLY 149

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            KM   GV  +  T ASVLSACSSLG LE GK VH      G   D+ VA          
Sbjct: 150 RKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVA---------- 199

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                N ++++Y  CG ++ A+ +F  M  ++++SW +MI   +
Sbjct: 200 ---------------------NALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYA 238

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSD 470
            +    EA+ L+     +D+  +  +LASV+SACA++ + E G  V  ++  T  GL +D
Sbjct: 239 HHRHSEEAIQLY---KAMDVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATD 295

Query: 471 QIISTSLVDFYCKCG 485
           +++  +L++ Y KCG
Sbjct: 296 EVLQNALLNMYAKCG 310



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 196/413 (47%), Gaps = 84/413 (20%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------QKND 103
           M+ +CG+  ++  +FD+   ++   WN+MI  + + GH  ++++LF  M       + N 
Sbjct: 1   MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60

Query: 104 FSW-----------------------------------NMLISGFAKAGELKTARTLFND 128
            ++                                   N L++ +AK G +  AR +F+ 
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDG 120

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           M +R  ++W  +I  YVR G  REA+ L++++ S+ VE    +    A+V+ AC+ L AL
Sbjct: 121 MKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEP---NGITFASVLSACSSLGAL 177

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
           E GK +H+ +   G   D  + ++LV+LYGKCG  +SA +V + MK              
Sbjct: 178 EEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMK-------------- 223

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
                    R V         V W +MIS Y  +    EA+ L+  M    V  +A TLA
Sbjct: 224 --------IRNV---------VSWTAMISSYAHHRHSEEAIQLYKAM---DVAPNAVTLA 263

Query: 309 SVLSACSSLGFLEHGKQVHGH--ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           SVLSAC+SLG  E G+ VH    +   G+  D ++ +ALL+ Y+K G    A K+F  + 
Sbjct: 264 SVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKIFDAMA 323

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNG 415
           V DT+  +T+I  Y+  GR  +A  + R+M       S   + +++   SQ G
Sbjct: 324 VRDTMSWSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFIYGTVLTACSQAG 376



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 182/441 (41%), Gaps = 110/441 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++  GK++H   +  G         N L+ MY +CG+ T+A  +FD M +R
Sbjct: 66  VLAACSAVEALEQGKEVHRQMVDAG-FQFDAAAENSLVNMYAKCGSITEAREVFDGMKQR 124

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------------- 105
              SW  +I  +++ GH  ++L L+  M      P    F+                   
Sbjct: 125 TVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVH 184

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+S + K G + +AR +F+ M  RN ++W +MI  Y  +  + 
Sbjct: 185 AQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSE 244

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI--LVNGLDFDSVL 209
           EA++L+K ++      +  +A  LA+V+ ACA L   E G+ +H  +     GL  D VL
Sbjct: 245 EAIQLYKAMD------VAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVL 298

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            ++L+N+Y K                               CG  + AR++FD      +
Sbjct: 299 QNALLNMYAK-------------------------------CGDGDAARKIFDAMAVRDT 327

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W+++I+ Y  +    EA+ +   M   GV   +    +VL+ACS  G LE  +   G 
Sbjct: 328 MSWSTLIAAYTQHGRGGEAVEMCRSMELEGVQASSFIYGTVLTACSQAGLLESARHYFG- 386

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
            C   +  D              G P+         K+ D +    M TV    GR+ +A
Sbjct: 387 -C---LTRDC-------------GAPA---------KLEDYV---CMATVLGRAGRLAEA 417

Query: 390 KHIFRTMP-NKSLISWNSMIV 409
           + +   MP     ++W  ++ 
Sbjct: 418 EELLAVMPFEAEFVAWMGLLA 438



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 33/242 (13%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG--VLEDAS 305
           +A CG + ++R VFD       + WNSMI  Y  +    EA+ LF  M  +   V  +A 
Sbjct: 2   FAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAI 61

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  +VL+ACS++  LE GK+VH      G                               
Sbjct: 62  TYTTVLAACSAVEALEQGKEVHRQMVDAGF------------------------------ 91

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
             +D    N+++ +Y+ CG I +A+ +F  M  ++++SW  +I    + G P EALDL+ 
Sbjct: 92  -QFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYR 150

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M    +  +  + ASV+SAC+++ +LE G+ V A++   G   D  ++ +LV  Y KCG
Sbjct: 151 KMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCG 210

Query: 486 FI 487
            +
Sbjct: 211 SV 212



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 2/111 (1%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM--NKLDLRMDK 436
           +++ CG +++++ +F     K ++ WNSMIV  SQ+G P EA++LF +M  +   +  + 
Sbjct: 1   MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +  +V++AC+ + +LE G++V  ++   G   D     SLV+ Y KCG I
Sbjct: 61  ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSI 111


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 226/487 (46%), Gaps = 79/487 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL--- 92
           I   T+   N +L  Y +      AL LF+ MP R+  SWN M+    + G   ++L   
Sbjct: 223 IERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVA 282

Query: 93  ------------------------------------QLFNVMPQKNDFSWNMLISGFAKA 116
                                               Q+   +P  + +  + ++  +AK 
Sbjct: 283 VDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKC 342

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K AR +F+ +  RN ++W  +I  +++ G   E++ LF ++ ++L   +  D F LA
Sbjct: 343 GCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAEL---MTVDQFALA 399

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C++   +   +Q+HS  L +G     V+ +SL+++Y KCG+  +A  + + M+E 
Sbjct: 400 TIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEER 459

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    + +++ Y+  G +  AR  FD  +  + + WN+M+  YI +  + + L ++  M 
Sbjct: 460 DIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAML 519

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
               V+ D  T  ++   C+ +G  + G Q+ GH  KVG+I                   
Sbjct: 520 TEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLI------------------- 560

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                        DT ++N +IT+YS CGRI +A+ IF  +  K L+SWN+MI G SQ+G
Sbjct: 561 ------------LDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHG 608

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A+++F +M K   + D  S  +V+S+C++   ++ G+  F       L  D  +S 
Sbjct: 609 MGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDM-----LKRDHNVSP 663

Query: 476 SLVDFYC 482
            L  F C
Sbjct: 664 GLEHFSC 670



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 212/413 (51%), Gaps = 35/413 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
             +++ F++ G  + + + F+ + +   F  N +++G+AK+  +  A  LF  MP R+ +
Sbjct: 201 TGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVV 260

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN M+    ++G AREA+ +  ++++  V   + D+    + + ACA L++L +GKQ+H
Sbjct: 261 SWNMMVSALSQSGRAREALSVAVDMHNRGV---RLDSTTYTSSLTACAKLSSLGWGKQLH 317

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +                               QV+  +   D +  SA++  YA CG   
Sbjct: 318 A-------------------------------QVIRSLPCIDPYVASAMVELYAKCGCFK 346

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARRVF    D ++V W  +I G++     +E+L LF++MR   +  D   LA+++S CS
Sbjct: 347 EARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCS 406

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +   +   +Q+H  + K G    V+++++L+  Y+K G   +A  +FS ++  D +    
Sbjct: 407 NRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTG 466

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRM 434
           M+T YS  G I  A+  F  M  +++I+WN+M+    Q+G+  + L ++  M  + D+  
Sbjct: 467 MLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIP 526

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           D  +  ++   CA++ + +LG+Q+      +GL  D  +  +++  Y KCG I
Sbjct: 527 DWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRI 579



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 218/488 (44%), Gaps = 72/488 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG   DA  L    
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVG-LASAVFLQNTLLHAYLSCGALPDARGL---- 85

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                     L   + + N  + N++++G+AK G L  A  LF 
Sbjct: 86  --------------------------LRGDITEPNVITHNIMMNGYAKLGSLSDAEELFG 119

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACA 183
            MPRR+  +WN+++  Y ++G      R    + S +  R   D    AF     + +C 
Sbjct: 120 RMPRRDVTSWNTLMSGYYQSG------RFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCG 173

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L   E   Q+   +   G   D  + + +V+++ +CG  + A++  + ++ P  FC ++
Sbjct: 174 ALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNS 233

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +++GYA    ++ A  +F+   +   V WN M+S    +    EAL +   M   GV  D
Sbjct: 234 MLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLD 293

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
           ++T  S L+AC+ L  L  GKQ+H    +     D  VASA                   
Sbjct: 294 STTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASA------------------- 334

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                       M+ +Y+ CG  ++A+ +F ++ +++ +SW  +I G  Q G   E+L+L
Sbjct: 335 ------------MVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLEL 382

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M    + +D+F+LA++IS C+N   + L  Q+ +     G     +IS SL+  Y K
Sbjct: 383 FNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAK 442

Query: 484 CGFIKMDE 491
           CG ++  E
Sbjct: 443 CGNLQNAE 450


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 208/420 (49%), Gaps = 42/420 (10%)

Query: 76  NAMIEGFMK---LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           NA++  +MK   L     + ++ + MP K+  +W  ++ G+ + G++  AR++F ++  +
Sbjct: 198 NALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVK 257

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
             + WN+MI  YV +G   EA  LF+ +   ++ER+  D F   +V+ ACA+     +GK
Sbjct: 258 FDVVWNAMISGYVHSGMVVEAFELFRRM---VLERVPLDEFTFTSVLSACANAGFFAHGK 314

Query: 193 QIHSHILVNGLDFDS----VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            +H  I     +F       + ++LV LY KCG+   A ++ + MK  D    + ++SGY
Sbjct: 315 SVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGY 374

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
                ++ A  VF+     + + W  M+SGY+      +AL LF++MR   V     T A
Sbjct: 375 VESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYA 434

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
             +SAC  LG L+HGKQ+HGH  ++G            +  +  G               
Sbjct: 435 GAISACGELGSLKHGKQLHGHLVQLG-----------FEGSNSAG--------------- 468

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                N +IT+Y+ CG +++A  +F  MPN   +SWN+MI  L Q+G   EAL+LF  M 
Sbjct: 469 -----NALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMV 523

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFI 487
              +  D+ S  +V++AC +   ++ G Q F  +    G+   +   T L+D   + G I
Sbjct: 524 AEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRI 583



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 109 LISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           L++ +A AG L  A + F+ +P  RR+ +  N++I  Y R   A  AV +F+ L +    
Sbjct: 94  LVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS--G 151

Query: 167 RLQCDAFILATVIGACADLA--ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            L+ D +    ++ A   L   ++ +  Q+   +L +G      + ++LV LY KC    
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211

Query: 225 S---ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           +   A +VL+ M + D    + ++ GY   G +  AR VF+       V+WN+MISGY+ 
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG---VIDD 338
           +    EA  LF +M    V  D  T  SVLSAC++ GF  HGK VHG   ++    V + 
Sbjct: 272 SGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEA 331

Query: 339 VI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            + V +AL+  YSK G  + A ++F  +K  D +  NT+++ Y     ++ A  +F  MP
Sbjct: 332 ALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMP 391

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            K+ +SW  M+ G    G   +AL LF  M   D++   ++ A  ISAC  + SL+ G+Q
Sbjct: 392 YKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQ 451

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +   +  +G +       +L+  Y +CG +K
Sbjct: 452 LHGHLVQLGFEGSNSAGNALITMYARCGAVK 482



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 174/410 (42%), Gaps = 101/410 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +L +C        GK +H    +     +  + LP+ N L+ +Y +CGN   A  +FD M
Sbjct: 300 VLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNM 359

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SWN ++ G+++    +K++++F  MP KN+ SW +++SG+              
Sbjct: 360 KSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGY-------------- 405

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                            V  GF+ +A++LF  + ++ V+   CD +  A  I AC +L +
Sbjct: 406 -----------------VHGGFSEDALKLFNRMRAEDVK--PCD-YTYAGAISACGELGS 445

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L++GKQ+H H++  G +  +  G++L+ +Y +CG    AN +  +M   D    +A+IS 
Sbjct: 446 LKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISA 505

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
               G                                  EAL LF +M   G+  D  + 
Sbjct: 506 LGQHG-------------------------------HGREALELFDRMVAEGIYPDRISF 534

Query: 308 ASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
            +VL+AC+  G ++ G Q      +  G+I          D Y++               
Sbjct: 535 LTVLTACNHSGLVDEGFQYFESMKRDFGIIPGE-------DHYTR--------------- 572

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNG 415
                    +I +    GRI +A+ + +TMP +   S W +++ G   +G
Sbjct: 573 ---------LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSG 613



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 18/240 (7%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C    S+  GKQLH H ++ G   S     N L+ MY RCG   +A L+F
Sbjct: 430 DYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSN-SAGNALITMYARCGAVKEANLMF 488

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----SWNMLISGFAKAGELK 120
             MP  +  SWNAMI    + GH  ++L+LF+ M  +  +    S+  +++    +G + 
Sbjct: 489 LVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVD 548

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                F  M R   I      +  +I    R G   EA  L K +        +    I 
Sbjct: 549 EGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP------FEPTPSIW 602

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++  C     +E G      +       D      L N Y   G +  A +V  +M++
Sbjct: 603 EAILSGCRTSGDMELGAHAADQLFKMTPQHDGTY-ILLSNTYSAAGRWVDAARVRKLMRD 661


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/526 (26%), Positives = 271/526 (51%), Gaps = 50/526 (9%)

Query: 1   MDTRIDYLARLLQSCNTHHS----IHVGKQLHLHFLKK---GILNSTLPIANRLLQMYMR 53
           M   I   + L QS N  +     I++GKQ  +   K+    +++      N ++ ++ +
Sbjct: 1   MKLNIGTRSTLEQSKNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAK 60

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF 113
            G  +DA  LFD+M +RN  SWN MI G++     E++ +LF++M ++++FSW ++I+ +
Sbjct: 61  NGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCY 120

Query: 114 AKAGELKTARTLFNDMPRR-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            + G L+ AR LF  +P + +   WN+MI  Y + G   +A ++F+++    V+ L    
Sbjct: 121 TRKGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMP---VKDLVSYN 177

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
            +LA          A+++ +++    +V+     +++ +  VN    C D  SA ++   
Sbjct: 178 SMLAGYTQNGKMGLAMKFFERMAERNVVSW----NLMVAGFVN---NC-DLGSAWELFEK 229

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           + +P+      ++ G+A  GK+ +AR++FDR    + V WN+MI+ Y+ + +  EA+ LF
Sbjct: 230 IPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLF 289

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH------ACKV---------GVID 337
               +    +D  +  ++++    +G L+  ++V+        A K          G ID
Sbjct: 290 ----KETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRID 345

Query: 338 ------------DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
                       D I  ++++  Y + G  S+A  LF ++ V + +  NTMI+ Y+  G 
Sbjct: 346 EASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGE 405

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++ A  IF  M  +++ISWNS+I G  QNG  ++AL     M +   + D+ + A  +S+
Sbjct: 406 MDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSS 465

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           CAN+++L++G+Q+   +   G  +D  +S +L+  Y KCG ++  E
Sbjct: 466 CANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAE 511



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 202/415 (48%), Gaps = 46/415 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G    A+  F+ M  RN  SWN M+ GF+       + +LF  +P  N  
Sbjct: 177 NSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAV 236

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  ++ GFA+ G++  AR LF+ MP +N ++WN+MI  YV++    EAV+LFKE     
Sbjct: 237 SWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYK- 295

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                 D     T+I     +  L+  +++++ +    +   + L S L+    + G  +
Sbjct: 296 ------DCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLI----QNGRID 345

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF----------------------- 261
            A+QV + + + D  C +++I+GY   G+M++A  +F                       
Sbjct: 346 EASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGE 405

Query: 262 -DRTTDTSSVM-------WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
            DR T+    M       WNS+I+G++ N    +AL     M + G   D ST A  LS+
Sbjct: 406 MDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSS 465

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C++L  L+ GKQ+H    K G I+D+ V++AL+  Y+K G    A K+F +++  D I  
Sbjct: 466 CANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISW 525

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL----SQNGSPIEALDLF 424
           N++I+ Y+  G   +A   F  M ++  +      +G+    S  G   + +DLF
Sbjct: 526 NSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLF 580



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 109/233 (46%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L SC    ++ VGKQLH   LK G +N  L ++N L+ MY +CG    A  +F ++   +
Sbjct: 463 LSSCANLAALQVGKQLHELILKSGYIND-LFVSNALIAMYAKCGGVQSAEKVFKDIEGVD 521

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             SWN++I G+   G+  ++   F  M  +    ++ ++  ++S  + AG       LF 
Sbjct: 522 LISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFK 581

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M    AI      ++ ++    R G   EA  + + +      +++ +A +  +++ AC
Sbjct: 582 CMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGM------KVKANAGLWGSLLAAC 635

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                +E GK I +  L+     ++    +L N++ + G +    ++  +M+E
Sbjct: 636 RVHKNMELGK-IAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRE 687


>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 512

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 224/476 (47%), Gaps = 76/476 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           KQ+H   +K G +   + I N++         G+   A  LFD +P    F WN M++G+
Sbjct: 5   KQIHSQTIKTGTICKPI-IQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTMLKGY 63

Query: 83  MKLGHKEKSLQLF------NVMPQ---------------------------------KND 103
            ++   +  + ++      +V+P                                   N 
Sbjct: 64  SRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNV 123

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N LI+ ++  G    AR +F+   + + + WN+MI  Y R     +   LF E+   
Sbjct: 124 FVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEK- 182

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             +R+   +  L +V+ AC+ L  LE G+++H +I  + +  + ++ ++L+++Y  CG+ 
Sbjct: 183 --KRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEM 240

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           + A  +   MK  D    +A+++G+AN G+++ AR+ FD+  +   V W +MI GY+  N
Sbjct: 241 SVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVN 300

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EAL+LFH+M+ + V  D  T+ S+L+AC+ LG LE G+ V  +  K  V +D  V +
Sbjct: 301 CFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGN 360

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+D Y K                               CG +E A+ IF +MP     +
Sbjct: 361 ALIDMYFK-------------------------------CGNVEKARSIFNSMPRPDKFT 389

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           W +MIVGL+ NG   EALD+F  M K  +  D+ +   V+ AC +   ++ G  + 
Sbjct: 390 WTAMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVLCACTHTGMVDEGRNLL 445



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 192/373 (51%), Gaps = 36/373 (9%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE-LNSDLVERLQCDAFIL 175
           G++  AR LF+ +P      WN+M+  Y R    +  V ++ + L +D++     D +  
Sbjct: 36  GDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLP----DCYTY 91

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             +I       A EYGK++H H++  GL      GS++                      
Sbjct: 92  PFLIKGFKKDIAFEYGKELHCHVVKYGL------GSNV---------------------- 123

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
              F  +ALI+ Y+ CG  + AR +FD +  T  V WN+MIS Y    +  +   LFH+M
Sbjct: 124 ---FVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEM 180

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            +  VL  + TL SVLSACS L  LE G++VH +     V  ++IV +AL+D Y+  G  
Sbjct: 181 EKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEM 240

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           S A  +F  +K  D I    ++T +++ G+++ A+  F  MP +  +SW +MI G  Q  
Sbjct: 241 SVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVN 300

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EAL LF  M   +++ D+F++ S+++ACA + +LELGE V   +    + +D  +  
Sbjct: 301 CFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGN 360

Query: 476 SLVDFYCKCGFIK 488
           +L+D Y KCG ++
Sbjct: 361 ALIDMYFKCGNVE 373



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 66/319 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    +  G+++H  ++   ++ S L + N L+ MY  CG  + AL +F+ M
Sbjct: 192 LVSVLSACSKLKDLESGQKVH-KYISDHVVQSNLIVENALIDMYAACGEMSVALGIFESM 250

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW A++ GF  +G  + + + F+ MP+++  SW  +I G+ +    K A  LF+
Sbjct: 251 KSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFH 310

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M   N                                  ++ D F + +++ ACA L A
Sbjct: 311 EMQTSN----------------------------------VKPDEFTMVSILTACAQLGA 336

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE G+ + ++I  N +  D+ +G++L+++Y KCG+   A  + N M  PD F  +A+I G
Sbjct: 337 LELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVG 396

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A                          I+GY       EAL +F +M +  V  D  T 
Sbjct: 397 LA--------------------------INGY-----GEEALDMFVQMLKASVTPDEITY 425

Query: 308 ASVLSACSSLGFLEHGKQV 326
             VL AC+  G ++ G+ +
Sbjct: 426 VGVLCACTHTGMVDEGRNL 444



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%)

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G +  A+ +F T+P  ++  WN+M+ G S+  SP   + ++ +M K D+  D ++   +I
Sbjct: 36  GDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLI 95

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
                  + E G+++   V   GL S+  +  +L++ Y  CG   M
Sbjct: 96  KGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDM 141


>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 792

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/488 (28%), Positives = 227/488 (46%), Gaps = 70/488 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N L+   +R G    A  +FD MP R+  SWNAMI+G+++ G  E++  LF  M +KN  
Sbjct: 203 NTLVTGLIRNGETEKAKQVFDAMPSRDAVSWNAMIKGYIENGGMEEAKLLFENMSEKNVV 262

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W  ++ G+ + G++  A  LF +MP RN ++W +MI  +  N F REA+ LF E+  D 
Sbjct: 263 TWTSMVYGYCRYGDVHEAYRLFCEMPERNVVSWTAMISGFAWNEFYREALMLFLEMKKD- 321

Query: 165 VERLQCDAFILATVIGACADLAA--LEYGKQIHSHILVNG---LDFDSVLGSSLVNLYG- 218
           V+ +  +   L ++  AC  L       G+Q+H+ ++ NG   +D D  L  SLV++Y  
Sbjct: 322 VDAISPNGETLISLAYACGGLGVGFRRLGEQLHAQVISNGWESVDHDGRLAKSLVHMYAS 381

Query: 219 ----------------------------KCGDFNSANQVLNMMKE-PDDFCLSALISGYA 249
                                       K GDF  A  +   ++   D    +++I GY 
Sbjct: 382 FGLIASAQSLLNESFDLQSCNIIISAYLKNGDFERAETLFRRVESLHDKVSWTSMIDGYL 441

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           + G ++ A  +F +  D   V W  MISG + N    EA  L   M R G+    ST + 
Sbjct: 442 DAGDVSRAFDLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSV 501

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +LS+  +   L+ GK +H                               C +      YD
Sbjct: 502 LLSSAGATSNLDQGKHLH-------------------------------CVIAKTTACYD 530

Query: 370 T--ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
              IL N+++++Y+ CG I+DA  IF  M  K ++SWNS+I+GLS +G   +AL LF  M
Sbjct: 531 PDLILQNSLVSMYAKCGAIDDAYEIFSKMVRKDIVSWNSVIIGLSHHGLADKALKLFKEM 590

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGF 486
               ++ +  +   V+SAC++   +  G ++F A      +        S++D   + G 
Sbjct: 591 LDSGMKPNSVTFLGVLSACSHSGLITKGLELFKAMKETYSIQPGVEHYISMIDLLGRAGK 650

Query: 487 IKMDEYYL 494
           +K  E ++
Sbjct: 651 LKEAEEFI 658



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 228/499 (45%), Gaps = 62/499 (12%)

Query: 33  KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW----NAMIEGFMKLGHK 88
           ++G  N    I  RL +     G    A  L D++P+R   S      +++  + K G+ 
Sbjct: 69  RRGFSNEEALILRRLSE-----GGLVHARHLLDKIPQRGSISRVIYCTSLLTKYAKAGYL 123

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           +++  LF VMP++N  + N +++G+ K   L  A TLF +MP +N ++W  M+     +G
Sbjct: 124 DEARVLFEVMPERNIVTCNAMLTGYVKCRRLNEAWTLFREMP-KNVVSWTVMLTALCDDG 182

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +AV LF E+     ER   +     T++         E  KQ+   +       D+V
Sbjct: 183 RSDDAVELFDEMP----ER---NVVSWNTLVTGLIRNGETEKAKQVFDAMPSR----DAV 231

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             ++++  Y + G    A  +   M E +    ++++ GY   G +++A R+F    + +
Sbjct: 232 SWNAMIKGYIENGGMEEAKLLFENMSEKNVVTWTSMVYGYCRYGDVHEAYRLFCEMPERN 291

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSL--GFLEHGK 324
            V W +MISG+  N    EAL+LF +M++  + +  +  TL S+  AC  L  GF   G+
Sbjct: 292 VVSWTAMISGFAWNEFYREALMLFLEMKKDVDAISPNGETLISLAYACGGLGVGFRRLGE 351

Query: 325 QVHGHACKVG---VIDDVIVASALLDTYSKRGMPSDACKLFSE--------------LK- 366
           Q+H      G   V  D  +A +L+  Y+  G+ + A  L +E              LK 
Sbjct: 352 QLHAQVISNGWESVDHDGRLAKSLVHMYASFGLIASAQSLLNESFDLQSCNIIISAYLKN 411

Query: 367 ---------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                          ++D +   +MI  Y   G +  A  +F+ + +K  ++W  MI GL
Sbjct: 412 GDFERAETLFRRVESLHDKVSWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVTWTVMISGL 471

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ---VFARVTIIGLD 468
            QN    EA  L  +M +  L+    + + ++S+    S+L+ G+    V A+ T    D
Sbjct: 472 VQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHLHCVIAKTTAC-YD 530

Query: 469 SDQIISTSLVDFYCKCGFI 487
            D I+  SLV  Y KCG I
Sbjct: 531 PDLILQNSLVSMYAKCGAI 549



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           LL S     ++  GK LH    K     +  L + N L+ MY +CG   DA  +F +M R
Sbjct: 502 LLSSAGATSNLDQGKHLHCVIAKTTACYDPDLILQNSLVSMYAKCGAIDDAYEIFSKMVR 561

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTL 125
           ++  SWN++I G    G  +K+L+LF  M     + N  ++  ++S  + +G +     L
Sbjct: 562 KDIVSWNSVIIGLSHHGLADKALKLFKEMLDSGMKPNSVTFLGVLSACSHSGLITKGLEL 621

Query: 126 FNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKEL 160
           F  M    +I      + SMI    R G  +EA      L
Sbjct: 622 FKAMKETYSIQPGVEHYISMIDLLGRAGKLKEAEEFISAL 661


>gi|255539304|ref|XP_002510717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551418|gb|EEF52904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 742

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/477 (29%), Positives = 225/477 (47%), Gaps = 66/477 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C       +  QLH  F +K    S   I   ++ MY++CG  T A  +F       
Sbjct: 131 MKACGALGCFKLAIQLHGLF-EKFDFGSDKSIETSVMGMYIKCGAFTYADRVF------- 182

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                        LG ++ SL           F +N ++  ++ +  +  A  LFN +P 
Sbjct: 183 -------------LGIRQPSL-----------FCFNSMLYCYSNSYGVGKALDLFNRIPE 218

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R++++W+++I    R+GF    + +F E+     +  + ++   A V+ AC  +  LE+G
Sbjct: 219 RDSVSWSTIISILSRHGFGVPTLSMFIEM---WTQGFRPNSMTFACVLSACTSIHDLEWG 275

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H+ I+   +  D  +G+ LV +Y                               A C
Sbjct: 276 AHLHARIIRKEIILDDYVGNGLVYMY-------------------------------AKC 304

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G +  ARRVF+  T+ ++V W S+I+G        EALLLF+KMR   V  D  T A+VL
Sbjct: 305 GHLKFARRVFNSLTEHNAVSWTSLINGVARCGLKEEALLLFNKMREVLVALDEFTFATVL 364

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
             CS   F   G+Q+H    K G+   V V +AL+  YSK G    A  +F  + V + I
Sbjct: 365 KVCSHPNFNFTGRQLHALTTKTGMGSIVTVGNALITMYSKCGDTQKADCVFKMMPVRNII 424

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              +MIT +S  G    A+  F  MP +++I+WNSMI    Q+G     L L+  M +  
Sbjct: 425 SWTSMITAFSQAGYFRKAQACFNKMPERNVITWNSMISMYIQHGFQEWGLKLYVRMQRER 484

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  D  + A+ ISACA+++ L+LG Q+ A+   +G  SD  ++ SLV  Y +CG I+
Sbjct: 485 IAPDDITFATSISACADLAMLKLGNQIVAQAEKLGFGSDVSVANSLVTMYSRCGQIE 541



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 207/449 (46%), Gaps = 73/449 (16%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           GI   +L   N +L  Y        AL LF+ +P R+  SW+ +I    + G    +L +
Sbjct: 184 GIRQPSLFCFNSMLYCYSNSYGVGKALDLFNRIPERDSVSWSTIISILSRHGFGVPTLSM 243

Query: 95  FNVMPQK-------------------NDFSW--------------------NMLISGFAK 115
           F  M  +                   +D  W                    N L+  +AK
Sbjct: 244 FIEMWTQGFRPNSMTFACVLSACTSIHDLEWGAHLHARIIRKEIILDDYVGNGLVYMYAK 303

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
            G LK AR +FN +   NA++W S+I+   R G   EA+ LF ++   LV     D F  
Sbjct: 304 CGHLKFARRVFNSLTEHNAVSWTSLINGVARCGLKEEALLLFNKMREVLV---ALDEFTF 360

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           ATV+  C+       G+Q+H+     G+     +G++L+ +Y KCGD   A+ V  MM  
Sbjct: 361 ATVLKVCSHPNFNFTGRQLHALTTKTGMGSIVTVGNALITMYSKCGDTQKADCVFKMMPV 420

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            +    +++I+ ++  G    A+  F++  + + + WNSMIS YI +      L L+ +M
Sbjct: 421 RNIISWTSMITAFSQAGYFRKAQACFNKMPERNVITWNSMISMYIQHGFQEWGLKLYVRM 480

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +R  +  D  T A+ +SAC+ L  L+ G Q+   A K+G   DV VA             
Sbjct: 481 QRERIAPDDITFATSISACADLAMLKLGNQIVAQAEKLGFGSDVSVA------------- 527

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N+++T+YS CG+IE+A+  F  +  K+L+SWNSMI G +QNG
Sbjct: 528 ------------------NSLVTMYSRCGQIEEARKAFDLVSMKNLVSWNSMIAGYAQNG 569

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVIS 444
               A+++F NM +++   D  S  SV+S
Sbjct: 570 HGRVAIEVFKNMLEMEYIPDHISYLSVLS 598



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 224/470 (47%), Gaps = 73/470 (15%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+ + ++LH   +  G+  S   + N LL MY+ C    DA  +F +M  RN FS+    
Sbjct: 6   SMPIARKLHAQLISTGLYISIF-LHNHLLNMYLNCHLTHDACRVFADMTFRNVFSY---- 60

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                                      N +I+G +KA ++  A+ +F++MP R++++WNS
Sbjct: 61  ---------------------------NTMITGLSKAEQIDKAKKVFDEMPERDSVSWNS 93

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA--TVIGACADLAALEYGKQIHSH 197
           M+  Y RNG   E V++F  +    +    C   +L+    + AC  L   +   Q+H  
Sbjct: 94  MMSGYFRNGKYEEVVKVFVLM----IRNFTCIVNLLSFSCAMKACGALGCFKLAIQLHG- 148

Query: 198 ILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            L    DF  D  + +S++ +Y KCG F  A++V   +++P  FC ++++  Y+N   + 
Sbjct: 149 -LFEKFDFGSDKSIETSVMGMYIKCGAFTYADRVFLGIRQPSLFCFNSMLYCYSNSYGVG 207

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  +F+R  +  SV W+++IS    +      L +F +M   G   ++ T A VLSAC+
Sbjct: 208 KALDLFNRIPERDSVSWSTIISILSRHGFGVPTLSMFIEMWTQGFRPNSMTFACVLSACT 267

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+  LE G  +H           +I    +LD Y   G                      
Sbjct: 268 SIHDLEWGAHLHAR---------IIRKEIILDDYVGNG---------------------- 296

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           ++ +Y+ CG ++ A+ +F ++   + +SW S+I G+++ G   EAL LF  M ++ + +D
Sbjct: 297 LVYMYAKCGHLKFARRVFNSLTEHNAVSWTSLINGVARCGLKEEALLLFNKMREVLVALD 356

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +F+ A+V+  C++ +    G Q+ A  T  G+ S   +  +L+  Y KCG
Sbjct: 357 EFTFATVLKVCSHPNFNFTGRQLHALTTKTGMGSIVTVGNALITMYSKCG 406



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 157/311 (50%), Gaps = 4/311 (1%)

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +G C+   ++   +++H+ ++  GL     L + L+N+Y  C   + A +V   M   + 
Sbjct: 1   MGHCS---SMPIARKLHAQLISTGLYISIFLHNHLLNMYLNCHLTHDACRVFADMTFRNV 57

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F  + +I+G +   +++ A++VFD   +  SV WNSM+SGY  N +  E + +F  M RN
Sbjct: 58  FSYNTMITGLSKAEQIDKAKKVFDEMPERDSVSWNSMMSGYFRNGKYEEVVKVFVLMIRN 117

Query: 299 -GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
              + +  + +  + AC +LG  +   Q+HG   K     D  + ++++  Y K G  + 
Sbjct: 118 FTCIVNLLSFSCAMKACGALGCFKLAIQLHGLFEKFDFGSDKSIETSVMGMYIKCGAFTY 177

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           A ++F  ++       N+M+  YS+   +  A  +F  +P +  +SW+++I  LS++G  
Sbjct: 178 ADRVFLGIRQPSLFCFNSMLYCYSNSYGVGKALDLFNRIPERDSVSWSTIISILSRHGFG 237

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
           +  L +F  M     R +  + A V+SAC +I  LE G  + AR+    +  D  +   L
Sbjct: 238 VPTLSMFIEMWTQGFRPNSMTFACVLSACTSIHDLEWGAHLHARIIRKEIILDDYVGNGL 297

Query: 478 VDFYCKCGFIK 488
           V  Y KCG +K
Sbjct: 298 VYMYAKCGHLK 308



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 118/254 (46%), Gaps = 35/254 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+ C+  +    G+QLH    K G + S + + N L+ MY +CG+   A  +F  M
Sbjct: 360 FATVLKVCSHPNFNFTGRQLHALTTKTG-MGSIVTVGNALITMYSKCGDTQKADCVFKMM 418

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P RN  SW +MI  F + G+  K+   FN MP++N  +WN                    
Sbjct: 419 PVRNIISWTSMITAFSQAGYFRKAQACFNKMPERNVITWN-------------------- 458

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                      SMI  Y+++GF    ++L+  +     ER+  D    AT I ACADLA 
Sbjct: 459 -----------SMISMYIQHGFQEWGLKLYVRMQR---ERIAPDDITFATSISACADLAM 504

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L+ G QI +     G   D  + +SLV +Y +CG    A +  +++   +    +++I+G
Sbjct: 505 LKLGNQIVAQAEKLGFGSDVSVANSLVTMYSRCGQIEEARKAFDLVSMKNLVSWNSMIAG 564

Query: 248 YANCGKMNDARRVF 261
           YA  G    A  VF
Sbjct: 565 YAQNGHGRVAIEVF 578



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 14/167 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  + +C     + +G Q+     K G   S + +AN L+ MY RCG   +A   FD +
Sbjct: 492 FATSISACADLAMLKLGNQIVAQAEKLG-FGSDVSVANSLVTMYSRCGQIEEARKAFDLV 550

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG-FAKAGELKTA 122
             +N  SWN+MI G+ + GH   ++++F  M +     +  S+  ++S    +AG L+ A
Sbjct: 551 SMKNLVSWNSMIAGYAQNGHGRVAIEVFKNMLEMEYIPDHISYLSVLSDLLGRAGLLEQA 610

Query: 123 RTLFNDMP-RRNAIAWNSM-----IHCYVRNGFAREAVRLFKELNSD 163
           + L +DMP   N   W ++     IHC   +  A  AV+  +EL+ D
Sbjct: 611 KNLIDDMPFTPNGDVWGALLGACKIHC--NSKLAEYAVKNSQELDVD 655


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/533 (27%), Positives = 251/533 (47%), Gaps = 86/533 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D  + L   C    S+   +  H   L +G+ +        ++ MY+   +P  AL +  
Sbjct: 49  DLTSTLFHQCK---SLASAELTHQQLLVQGLPHDP----THIISMYLTFNSPAKALSVLR 101

Query: 66  EM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------- 100
            +       F WN +I   + LG  E  LQL+  M +                       
Sbjct: 102 RLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSF 161

Query: 101 -----------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNA---IAWNSMI 141
                       + F WN+     L+S + + G  + AR +F++M  R     ++WNS++
Sbjct: 162 RCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIV 221

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y++ G +  A+++F+ +  DL   ++ DA  L  V+ ACA + A   GKQ+H + L +
Sbjct: 222 AAYMQGGDSIRAMKMFERMTEDL--GIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 279

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL  D  +G+++V++Y KCG    AN+V   MK  D    +A+++GY+  G+ +DA  +F
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339

Query: 262 DRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           ++  +     + V W+++I+GY       EAL +F +M   G   +  TL S+LS C+S 
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASA 399

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G L HGK+ H HA K  +  D                P D           D +++N +I
Sbjct: 400 GTLLHGKETHCHAIKWILNLD-------------ENDPGD-----------DLMVINALI 435

Query: 378 TVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LR 433
            +YS C   + A+ +F  +P K  S+++W  +I G +Q+G   EAL+LF  M + D  + 
Sbjct: 436 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 495

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
            + F+++  + ACA + +L  G Q+ A V     +S  + ++  L+D Y K G
Sbjct: 496 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSG 548



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 125/508 (24%), Positives = 222/508 (43%), Gaps = 94/508 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    S   G  +H      G   +   + N L+ MY RCG   +A  +FDEM  R
Sbjct: 151 VLKACGEIPSFRCGASVHAVVFASGFEWNVF-VGNGLVSMYGRCGAWENARQVFDEMRER 209

Query: 71  ---NCFSWNAMIEGFMK-----------------LGHKEKSLQLFNVMPQ---------- 100
              +  SWN+++  +M+                 LG +  ++ L NV+P           
Sbjct: 210 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 269

Query: 101 -------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                        ++ F  N ++  +AK G ++ A  +F  M  ++ ++WN+M+  Y + 
Sbjct: 270 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 329

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   +A+ LF+++     E+++ +    + VI   A          +   +L+ G + + 
Sbjct: 330 GRFDDALGLFEKIRE---EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNV 386

Query: 208 VLGSSLVN--------LYGKCGDFNSANQVLNMMK-EPDD--FCLSALISGYANCGKMND 256
           V   SL++        L+GK    ++   +LN+ + +P D    ++ALI  Y+ C     
Sbjct: 387 VTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA 446

Query: 257 ARRVFD--RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLS 312
           AR +FD     D S V W  +I G   + E  EAL LF +M +  N V+ +A T++  L 
Sbjct: 447 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 506

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           AC+ LG L  G+Q+H +  +      ++ VA+ L+D YSK                    
Sbjct: 507 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK-------------------- 546

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                       G ++ A+ +F  M  ++ +SW S++ G   +G   EAL +F  M K+ 
Sbjct: 547 -----------SGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVX 595

Query: 432 LRMDKFSLASVISACANISSLELGEQVF 459
           L  D  +   V+ AC++   ++ G   F
Sbjct: 596 LVPDGVTFVVVLYACSHSGMVDQGINYF 623



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 189/461 (40%), Gaps = 120/461 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG------------ 55
           L  +L +C +  +   GKQ+H + L+ G+      + N ++ MY +CG            
Sbjct: 253 LVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF-VGNAVVDMYAKCGMMEEANKVFERM 311

Query: 56  -------------------NPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSL 92
                                 DAL LF+++       N  +W+A+I G+ + G   ++L
Sbjct: 312 KVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEAL 371

Query: 93  QLFNVM----PQKNDFSWNMLISGFAKAGEL----------------------------- 119
            +F  M     + N  +   L+SG A AG L                             
Sbjct: 372 DVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVI 431

Query: 120 -------------KTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKE-LNSD 163
                        K AR +F+ +P   R+ + W  +I    ++G A EA+ LF + L  D
Sbjct: 432 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 491

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               +  +AF ++  + ACA L AL +G+QIH+++L N                     F
Sbjct: 492 --NFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN--------------------RF 529

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            SA     M+     F  + LI  Y+  G ++ AR VFD     + V W S+++GY  + 
Sbjct: 530 ESA-----ML-----FVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHG 579

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVA 342
              EAL +F++M++  ++ D  T   VL ACS  G ++ G    +G     GV+      
Sbjct: 580 RGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHY 639

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           + ++D  S+ G   +A +L   + +  T  +   + + S+C
Sbjct: 640 ACMVDLLSRAGRLDEAMELIRGMPMKPTPAV--WVALLSAC 678



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 132/319 (41%), Gaps = 70/319 (21%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           + +T+   C  LA+ E     H  +LV GL  D    + ++++Y     FNS  + L+++
Sbjct: 50  LTSTLFHQCKSLASAEL---THQQLLVQGLPHDP---THIISMYLT---FNSPAKALSVL 100

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                                   RR+    +  +   WN +I   +      + L L+ 
Sbjct: 101 ------------------------RRL--HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYR 134

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M+R G   D  T   VL AC  +     G  VH           V+ AS          
Sbjct: 135 RMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA----------VVFASGF-------- 176

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVG 410
                         ++  + N ++++Y  CG  E+A+ +F  M  +    L+SWNS++  
Sbjct: 177 -------------EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 223

Query: 411 LSQNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
             Q G  I A+ +F  M + L +R D  SL +V+ ACA++ +   G+QV       GL  
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 283

Query: 470 DQIISTSLVDFYCKCGFIK 488
           D  +  ++VD Y KCG ++
Sbjct: 284 DVFVGNAVVDMYAKCGMME 302



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 15/197 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++  G+Q+H + L+    ++ L +AN L+ MY + G+   A ++FD M +RN
Sbjct: 505 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             SW +++ G+   G  E++LQ+F  M +     +  ++ +++   + +G +      FN
Sbjct: 565 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFN 624

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +      +  M+    R G   EA+ L + +       ++    +   ++ AC
Sbjct: 625 GMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP------MKPTPAVWVALLSAC 678

Query: 183 ADLAALEYGKQIHSHIL 199
              A +E G+   + +L
Sbjct: 679 RVYANVELGEYAANQLL 695


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 209/392 (53%), Gaps = 14/392 (3%)

Query: 109 LISGFAKAGELKTAR---TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
           L+S +A A  L T +   TL + +P     +++S+IH + R+      +  F  L+    
Sbjct: 41  LLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHP--- 97

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
            RL  DAF+L + I +CA L AL+ G+Q+H+    +G   DS++ SSL ++Y KC     
Sbjct: 98  LRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILD 157

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSMISGYIS 281
           A ++ + M + D    SA+I+GY+  G + +A+ +F        + + V WN M++G+ +
Sbjct: 158 ARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGN 217

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N    EA+ +F  M   G   D ST++ VL A   L  +  G QVHG+  K G+  D  V
Sbjct: 218 NGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFV 277

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            SA+LD Y K G   +  ++F E++  +   LN  +T  S  G ++ A  +F    ++ +
Sbjct: 278 VSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKM 337

Query: 402 ----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
               ++W S+I   SQNG  +EAL+LF +M    +  +  ++ S+I AC NIS+L  G++
Sbjct: 338 ELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKE 397

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +       G+  D  + ++L+D Y KCG I++
Sbjct: 398 IHCFSLRRGIFDDVYVGSALIDMYAKCGRIQL 429



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 224/460 (48%), Gaps = 74/460 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   ++SC +  ++  G+QLH      G L  ++ +A+ L  MY++C    DA  LFD M
Sbjct: 107 LPSAIKSCASLRALDPGQQLHAFAAASGFLTDSI-VASSLTHMYLKCDRILDARKLFDRM 165

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P R+   W+AMI G+ +LG  E++ +LF  M     + N  SWN +++GF          
Sbjct: 166 PDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGN-------- 217

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
                                  NGF  EAV +F+ +   LV+    D   ++ V+ A  
Sbjct: 218 -----------------------NGFYDEAVGMFRMM---LVQGFWPDGSTVSCVLPAVG 251

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L  +  G Q+H +++  GL  D  + S+++++YGKCG     ++V + ++E +   L+A
Sbjct: 252 CLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNA 311

Query: 244 LISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
            ++G +  G ++ A  VF    D+  + + V W S+I+    N +D EAL LF  M+  G
Sbjct: 312 FLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYG 371

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           V  +A T+ S++ AC ++  L HGK++H  + + G+ DDV V SAL+D Y+K        
Sbjct: 372 VEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAK-------- 423

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                                  CGRI+ A+  F  M   +L+SWN+++ G + +G   E
Sbjct: 424 -----------------------CGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKE 460

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            +++F  M +   + D  +   V+SACA     E G + +
Sbjct: 461 TMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCY 500



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 42/312 (13%)

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM---MKEPDDFCLS 242
           A+L   +Q H+ IL   L  D+ L +SL++ Y      ++    L +   +  P  F  S
Sbjct: 14  ASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFS 73

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           +LI  +A           F                               H +R   ++ 
Sbjct: 74  SLIHAFARSHHFPHVLTTFSH----------------------------LHPLR---LIP 102

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           DA  L S + +C+SL  L+ G+Q+H  A   G + D IVAS+L   Y K     DA KLF
Sbjct: 103 DAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLF 162

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGS 416
             +   D ++ + MI  YS  G +E+AK +F  M      PN  L+SWN M+ G   NG 
Sbjct: 163 DRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPN--LVSWNGMLAGFGNNGF 220

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             EA+ +F  M       D  +++ V+ A   +  + +G QV   V   GL SD+ + ++
Sbjct: 221 YDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSA 280

Query: 477 LVDFYCKCGFIK 488
           ++D Y KCG +K
Sbjct: 281 MLDMYGKCGCVK 292


>gi|224088075|ref|XP_002308315.1| predicted protein [Populus trichocarpa]
 gi|222854291|gb|EEE91838.1| predicted protein [Populus trichocarpa]
          Length = 545

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/565 (26%), Positives = 255/565 (45%), Gaps = 115/565 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           D    LLQ C    ++ +G+Q+H   +K G  L +   +  +L   Y +C     A   F
Sbjct: 11  DIYGLLLQGCLYDRALFMGQQIHSRIIKIGDSLATNEYLETKLFIFYAKCHLFEVANNFF 70

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQ----------------LFNVMPQKNDFSW-- 106
             +  +N FSW A+I    ++G   ++L                 + N++       W  
Sbjct: 71  SRLSVKNVFSWAAIIGLNCRMGFYREALMGLCEMIDTGILADNFVVPNILKACAALQWIS 130

Query: 107 ---------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                                + L+  + K G L+ AR +F++M  +N + WNSMI  YV
Sbjct: 131 FGRGVHGYVVKMGFDRCVFVSSSLVDAYGKCGILEDARKVFDNMSDKNVVTWNSMIGSYV 190

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NGF  EA R+F E+    +E ++ +   L + + A A+L A+E GKQ H+  ++ G + 
Sbjct: 191 QNGFDVEAARVFSEMR---LEDVEPNQVTLLSFLSASANLGAVEEGKQAHAIAVLGGYEL 247

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           DS+LG S++N Y K G                                + DA  VF    
Sbjct: 248 DSILGGSILNFYSKVG-------------------------------LIKDAELVFGMML 276

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           +  +V WN +IS Y+   +  +AL L H MR   +  D+ TLAS+LSACS +G +E GK+
Sbjct: 277 EKDAVAWNLLISSYVQYGQVEKALDLCHLMRLENMRFDSVTLASILSACSIMGNIELGKE 336

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H +  +  ++ D+ VA++++D Y+K    +DA  +F+     D +L NT++T Y+  G 
Sbjct: 337 GHCYCIRNYLVSDLAVANSMIDMYAKCEKIADARHVFNSTMNKDLLLWNTLLTAYAELGV 396

Query: 386 IEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--------- 432
             +   +F  M  +S+    +SWN++I+G  +NG   EA D+F +M  + +         
Sbjct: 397 TGEVLKLFYGMQLESVPPNVMSWNAVILGFIRNGQINEAQDMFSHMQAVGIHPNLMTFTT 456

Query: 433 --------------------------RMDKFSLASVISACANISSLELGEQVFARVTIIG 466
                                     R +   + S ISAC +++SL+ G  +   +    
Sbjct: 457 LICGLVQNGFGNEAILVFQKMQECGIRANLPIIISTISACTDVASLQYGRAIHGYILRHD 516

Query: 467 LDSDQIISTSLVDFYCKCGFIKMDE 491
           L S   ++T+L + Y KCG   MD+
Sbjct: 517 LLSPIPVATALAEMYSKCG--NMDQ 539



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 198/461 (42%), Gaps = 113/461 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I  G+ +H + +K G  +  + +++ L+  Y +CG   DA  +FD M  +
Sbjct: 119 ILKACAALQWISFGRGVHGYVVKMG-FDRCVFVSSSLVDAYGKCGILEDARKVFDNMSDK 177

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK----------------------- 101
           N  +WN+MI  +++ G   ++ ++F+ M      P +                       
Sbjct: 178 NVVTWNSMIGSYVQNGFDVEAARVFSEMRLEDVEPNQVTLLSFLSASANLGAVEEGKQAH 237

Query: 102 -----NDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                  +  + ++ G     ++K G +K A  +F  M  ++A+AWN +I  YV+ G   
Sbjct: 238 AIAVLGGYELDSILGGSILNFYSKVGLIKDAELVFGMMLEKDAVAWNLLISSYVQYGQVE 297

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ L   +    +E ++ D+  LA+++ AC+ +  +E GK+ H + + N L  D  + +
Sbjct: 298 KALDLCHLMR---LENMRFDSVTLASILSACSIMGNIELGKEGHCYCIRNYLVSDLAVAN 354

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDT 267
           S++++Y KC     A  V N     D    + L++ YA  G   +  ++F      +   
Sbjct: 355 SMIDMYAKCEKIADARHVFNSTMNKDLLLWNTLLTAYAELGVTGEVLKLFYGMQLESVPP 414

Query: 268 SSVMWNSMISGYISNNE-----------------------------------DTEALLLF 292
           + + WN++I G+I N +                                     EA+L+F
Sbjct: 415 NVMSWNAVILGFIRNGQINEAQDMFSHMQAVGIHPNLMTFTTLICGLVQNGFGNEAILVF 474

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            KM+  G+  +   + S +SAC+ +  L++G+ +HG+  +  ++  + VA+AL + YSK 
Sbjct: 475 QKMQECGIRANLPIIISTISACTDVASLQYGRAIHGYILRHDLLSPIPVATALAEMYSK- 533

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
                                         CG ++ AK + 
Sbjct: 534 ------------------------------CGNMDQAKRVL 544



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 127/231 (54%), Gaps = 12/231 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+   +I +GK+ H + ++   L S L +AN ++ MY +C    DA  +F+  
Sbjct: 318 LASILSACSIMGNIELGKEGHCYCIRN-YLVSDLAVANSMIDMYAKCEKIADARHVFNST 376

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + +LG   + L+LF  M       N  SWN +I GF + G++  A+
Sbjct: 377 MNKDLLLWNTLLTAYAELGVTGEVLKLFYGMQLESVPPNVMSWNAVILGFIRNGQINEAQ 436

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F+ M       N + + ++I   V+NGF  EA+ +F+++       ++ +  I+ + I
Sbjct: 437 DMFSHMQAVGIHPNLMTFTTLICGLVQNGFGNEAILVFQKMQEC---GIRANLPIIISTI 493

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
            AC D+A+L+YG+ IH +IL + L     + ++L  +Y KCG+ + A +VL
Sbjct: 494 SACTDVASLQYGRAIHGYILRHDLLSPIPVATALAEMYSKCGNMDQAKRVL 544


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 225/449 (50%), Gaps = 74/449 (16%)

Query: 8   LARLLQSCNTHHSI----HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           L    Q+C T +S+     +G+ +H   ++KG   S   + N L+ MY +C    +A+ +
Sbjct: 249 LGACAQACATDYSVARAFRLGQAIHALVVRKG-FGSDQHVGNSLIDMYTKCVEMDEAVKV 307

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGEL 119
           F+ +P     SWN +I GF + G   K++++ ++M +     N+ +++ L++   KA ++
Sbjct: 308 FESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDV 367

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +AR +F+ + R +   WN+++  Y +    ++ + LF+ +     + +Q D   LA ++
Sbjct: 368 HSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQH---QNVQPDRTTLAVIL 424

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            +C+ L  L++G+Q+HS  +   L  D  + S LV++Y K                    
Sbjct: 425 SSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSK-------------------- 464

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                      CG++  AR +F++ T+   V WNS+ISG   ++ + EA   F +MR NG
Sbjct: 465 -----------CGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 513

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           ++   S+ AS++++CS L  + HG+Q+H    K G   +V V SAL+D Y+K        
Sbjct: 514 IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAK-------- 565

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                                  CG ++DA+  F TM  K++++WN MI G +QNG   +
Sbjct: 566 -----------------------CGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDK 602

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A++LF  M   + + D  +  +V++ C++
Sbjct: 603 AVELFEYMLTTEQKPDAVTFIAVLTGCSH 631



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 148/566 (26%), Positives = 244/566 (43%), Gaps = 150/566 (26%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDE-------------------------------MPRRN 71
           +ANRL+++Y R G P  ALL F                                 MPRRN
Sbjct: 45  LANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRN 104

Query: 72  CFSWNAMIEGFMK-LGHKEKSLQLFNVMPQK----------------------------- 101
             SWN +I    +  G   ++++++  M  +                             
Sbjct: 105 AVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCH 164

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     N F  N L+  + K G +  A  LF  M R N +++ +M+    + G   
Sbjct: 165 GVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSID 224

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY--------GKQIHSHILVNGL 203
           +A+RLF  +    V     D   +++V+GACA   A +Y        G+ IH+ ++  G 
Sbjct: 225 DALRLFARMCRSGVP---VDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGF 281

Query: 204 DFDSVLGSSLVNLYGKC-------------------------------GDFNSANQVLNM 232
             D  +G+SL+++Y KC                               G    A +VL++
Sbjct: 282 GSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSL 341

Query: 233 MKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           M+E    P++   S L++       ++ AR +FD+ +  S   WN+++SGY    +  + 
Sbjct: 342 MQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDT 401

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           + LF +M+   V  D +TLA +LS+CS LG L+ G+QVH  + +  + +D+ VAS L+D 
Sbjct: 402 IELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDM 461

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           YSK                               CG+I  A+ IF  M  + ++ WNS+I
Sbjct: 462 YSK-------------------------------CGQIGIARSIFNKMTERDVVCWNSII 490

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            GL+ +    EA D F  M +  +   + S AS+I++C+ +SS+  G Q+ A+V   G D
Sbjct: 491 SGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYD 550

Query: 469 SDQIISTSLVDFYCKCGFIKMDEYYL 494
            +  + ++L+D Y KCG   MD+  L
Sbjct: 551 QNVYVGSALIDMYAKCG--NMDDARL 574



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 214/463 (46%), Gaps = 78/463 (16%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  N ++E + + G    +L  F  +P  ND+S+N  +S   +AG+L  AR L   MP
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 131 RRNAIAWNSMIHCYVRN-GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           RRNA++WN++I    R+ G   EAV ++  + +   E L    F LA+V+ AC  LAAL 
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRA---EGLLPTHFTLASVLSACGGLAALG 158

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G++ H   +  GLD +  + ++L+ +Y KCG    A ++   M  P++   +A++ G A
Sbjct: 159 DGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLA 218

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             G ++DA R                               LF +M R+GV  D  +++S
Sbjct: 219 QTGSIDDALR-------------------------------LFARMCRSGVPVDPVSVSS 247

Query: 310 VLSACSSLGFLEH--------GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
           VL AC+     ++        G+ +H    + G   D  V ++L+D Y+K     +A K+
Sbjct: 248 VLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKV 307

Query: 362 FSELKVYDTILLNTMITVY---SSCGR--------------------------------I 386
           F  L     +  N +IT +    SC +                                +
Sbjct: 308 FESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDV 367

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             A+ +F  +   S+ +WN+++ G  Q     + ++LF  M   +++ D+ +LA ++S+C
Sbjct: 368 HSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSC 427

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           + +  L+ G QV +      L +D  +++ LVD Y KCG I +
Sbjct: 428 SKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGI 470



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 42/295 (14%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+ L + LV LY + G    A      +  P+D+  +A +S     G ++ AR +     
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 266 DTSSVMWNSMISGYI-SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
             ++V WN++IS    S  +  EA+ ++ +MR  G+L    TLASVLSAC  L  L  G+
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           + HG A KVG+  +  V +ALL  Y+K                               CG
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTK-------------------------------CG 190

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            + DA  +F  M   + +S+ +M+ GL+Q GS  +AL LF  M +  + +D  S++SV+ 
Sbjct: 191 SVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLG 250

Query: 445 ACAN--------ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ACA           +  LG+ + A V   G  SDQ +  SL+D Y KC  ++MDE
Sbjct: 251 ACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKC--VEMDE 303


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 237/516 (45%), Gaps = 112/516 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   +Q H      G++   + IA +L+ +Y   G   DA L+FD++P  
Sbjct: 62  LLSKCTNIDSL---RQAHGVLTGNGLMGD-ISIATKLVSLYGSFGYTKDARLVFDQIPEP 117

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW------------------------ 106
           + + W  ++  +       + ++ ++++  K+ F +                        
Sbjct: 118 DFYLWKVILRCYCLNNESFEVIKFYDLL-MKHGFGYDDIVFSKALKACTEVQDLDNGKKI 176

Query: 107 -----------NMLISG----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                      N++++G    +AK GE+K++  +F D+  RN + W SMI  YV+N    
Sbjct: 177 HCQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYE 236

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E + LF  +  + V     + +   T++ AC  L AL  GK  H  ++ +G++  S L +
Sbjct: 237 EGLVLFNRMRENSV---LGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVT 293

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KCGD ++A +V N     D    +A+I GY + G +N                
Sbjct: 294 SLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVN---------------- 337

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                          EAL LF KM   G+  +  T+ASVLS C  +G LE G+ +HG + 
Sbjct: 338 ---------------EALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSI 382

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           KVG+                                +DT + N ++ +Y+ C +  DAK+
Sbjct: 383 KVGI--------------------------------WDTNVANALVHMYAKCYQNRDAKY 410

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F     K +++WNS+I G SQNGS  EAL LF  MN   +  +  ++AS+ SACA++ S
Sbjct: 411 VFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGS 470

Query: 452 LELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG 485
           L +G  + A    +G    S   + T+L+DFY KCG
Sbjct: 471 LAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 506



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 223/494 (45%), Gaps = 109/494 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ++ L++C     +  GK++H   +K    ++   +   LL MY +CG    +  +F+++
Sbjct: 157 FSKALKACTEVQDLDNGKKIHCQIVKVPSFDNV--VLTGLLDMYAKCGEIKSSYKVFEDI 214

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLI------------- 110
             RN   W +MI G++K    E+ L LFN M +     N++++  L+             
Sbjct: 215 TLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGK 274

Query: 111 --------SG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                   SG              + K G++  AR +FN+    + + W +MI  Y  NG
Sbjct: 275 WFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNG 334

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF++++      ++ +   +A+V+  C  +  LE G+ IH   +  G+ +D+ 
Sbjct: 335 SVNEALSLFQKMSG---VGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDTN 390

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LV++Y KC     A  V  M  E D    +++ISG++  G ++             
Sbjct: 391 VANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIH------------- 437

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                             EAL LFH+M    V+ +  T+AS+ SAC+SLG L  G  +H 
Sbjct: 438 ------------------EALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHA 479

Query: 329 HACKVGVI--DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           ++ K+G +    V V +ALLD Y+K                               CG  
Sbjct: 480 YSVKLGFLASSSVHVGTALLDFYAK-------------------------------CGDA 508

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           E A+ IF T+  K+ I+W++MI G  + G    +L+LF  M K   + ++ +  SV+SAC
Sbjct: 509 ESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSAC 568

Query: 447 ANISSLELGEQVFA 460
           ++   +  G++ F+
Sbjct: 569 SHTGMVNEGKKYFS 582



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 36/276 (13%)

Query: 216 LYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           L  KC + +S  Q   ++       D    + L+S Y + G   DAR VFD+  +    +
Sbjct: 62  LLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYL 121

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W  ++  Y  NNE  E +  +  + ++G   D    +  L AC+ +  L++GK++H    
Sbjct: 122 WKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIV 181

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           KV                     PS           +D ++L  ++ +Y+ CG I+ +  
Sbjct: 182 KV---------------------PS-----------FDNVVLTGLLDMYAKCGEIKSSYK 209

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  +  ++++ W SMI G  +N    E L LF  M +  +  ++++  +++ AC  + +
Sbjct: 210 VFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRA 269

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           L  G+     +   G++    + TSL+D Y KCG I
Sbjct: 270 LHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDI 305



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 115/240 (47%), Gaps = 21/240 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A L  +C +  S+ +G  LH + +K G L +S++ +   LL  Y +CG+   A L+FD 
Sbjct: 458 VASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDT 517

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTA 122
           +  +N  +W+AMI G+ K G  + SL+LF  M +K    N+ ++  ++S  +  G +   
Sbjct: 518 IEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEG 577

Query: 123 RTLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL--QCDAFIL 175
           +  F+ M +      +   +  M+    R G   +A+        D++E++  Q D    
Sbjct: 578 KKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQAL--------DIIEKMPIQPDVRCF 629

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
              +  C   +  + G+ +   +L    D D+     + NLY   G ++ A +V N+MK+
Sbjct: 630 GAFLHGCGMHSRFDLGEIVIKKMLDLHPD-DASYYVLVSNLYASDGRWSQAKEVRNLMKQ 688



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D  +   ++++Y S G  +DA+ +F  +P      W  ++     N    E +  +  + 
Sbjct: 87  DISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLM 146

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           K     D    +  + AC  +  L+ G+++  ++  +    D ++ T L+D Y KCG IK
Sbjct: 147 KHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVP-SFDNVVLTGLLDMYAKCGEIK 205


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 236/484 (48%), Gaps = 80/484 (16%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  +     +LQ C    SI  G+++H   ++   +     + ++L+ MY+ CG+  +  
Sbjct: 98  DLELRTYCSVLQLCADLKSIQDGRRIH-SIIQSNDVEVDGVLGSKLVFMYVTCGDLREGR 156

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
            +FD++     F WN ++ G+ K+G+  +SL LF  M +           G  +   +++
Sbjct: 157 RIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMREL----------GIRR---VES 203

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           AR LF+++  R+ I+WNSMI  YV NG + + + LF+++   L+  +  D   + +V+  
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQM---LLLGINTDLATMVSVVAG 260

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C++   L  G+ +H + +      +  L + L+++Y K G+ NS                
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNS---------------- 304

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                          A +VF+   + S V W SMI+GY        ++ LFH+M + G+ 
Sbjct: 305 ---------------AIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGIS 349

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ ++L AC+  G LE+GK VH +  +  +  D+ V++AL+D Y+K G   DA  +
Sbjct: 350 PDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSV 409

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           FSE++V D +  NTMI                                G S+N  P EAL
Sbjct: 410 FSEMQVKDIVSWNTMIG-------------------------------GYSKNSLPNEAL 438

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M + + + +  ++A ++ ACA++++LE G+++   +   G   D+ ++ +LVD Y
Sbjct: 439 NLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMY 497

Query: 482 CKCG 485
            KCG
Sbjct: 498 LKCG 501



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 200/468 (42%), Gaps = 107/468 (22%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           + K G    +L +  R+ ++ +R      A  LFDE+  R+  SWN+MI G++  G  EK
Sbjct: 177 YAKIGNFRESLSLFKRMRELGIR--RVESARKLFDELGDRDVISWNSMISGYVSNGLSEK 234

Query: 91  SLQLFNVM----------------------------------PQKNDFSW-----NMLIS 111
            L LF  M                                    K  F       N L+ 
Sbjct: 235 GLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLD 294

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
            ++K+G L +A  +F  M  R+ ++W SMI  Y R G +  +VRLF E+     E +  D
Sbjct: 295 MYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK---EGISPD 351

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
            F + T++ ACA    LE GK +H++I  N +                            
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKM---------------------------- 383

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
              + D F  +AL+  YA CG M DA  VF        V WN+MI GY  N+   EAL L
Sbjct: 384 ---QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M+ N    ++ T+A +L AC+SL  LE G+++HGH  + G   D  VA+AL+D Y K
Sbjct: 441 FVEMQYNSK-PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK 499

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +  A+ +F  +P K L+SW  MI G 
Sbjct: 500 -------------------------------CGALGLARLLFDMIPEKDLVSWTVMIAGY 528

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             +G   EA+  F  M    +  D+ S  S++ AC++   L+ G   F
Sbjct: 529 GMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFF 576



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 171/357 (47%), Gaps = 56/357 (15%)

Query: 148 GFAREAVRLFKE-LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           G  R A+ L  +    DL  R  C      +V+  CADL +++ G++IHS I  N ++ D
Sbjct: 82  GNLRRAMELINQSPKPDLELRTYC------SVLQLCADLKSIQDGRRIHSIIQSNDVEVD 135

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-------------- 252
            VLGS LV +Y  CGD     ++ + +     F  + L++GYA  G              
Sbjct: 136 GVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE 195

Query: 253 ----KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
               ++  AR++FD   D   + WNSMISGY+SN    + L LF +M   G+  D +T+ 
Sbjct: 196 LGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV 255

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           SV++ CS+ G L  G+ +HG+A K     ++ + + LLD YSK                 
Sbjct: 256 SVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKS---------------- 299

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                          G +  A  +F TM  +S++SW SMI G ++ G    ++ LF  M 
Sbjct: 300 ---------------GNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME 344

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           K  +  D F++ +++ ACA    LE G+ V   +    + SD  +S +L+D Y KCG
Sbjct: 345 KEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG 401



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 169/362 (46%), Gaps = 75/362 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           ++T +  +  ++  C+    + +G+ LH + +K       L + N LL MY + GN   A
Sbjct: 247 INTDLATMVSVVAGCSNTGMLLLGRALHGYAIKAS-FGKELTLNNCLLDMYSKSGNLNSA 305

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--------------------- 99
           + +F+ M  R+  SW +MI G+ + G  + S++LF+ M                      
Sbjct: 306 IQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACT 365

Query: 100 ------------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                             Q + F  N L+  +AK G +  A ++F++M  ++ ++WN+MI
Sbjct: 366 GLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMI 425

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y +N    EA+ LF E+  +     + ++  +A ++ ACA LAALE G++IH HIL N
Sbjct: 426 GGYSKNSLPNEALNLFVEMQYNS----KPNSITMACILPACASLAALERGQEIHGHILRN 481

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G   D  + ++LV++Y KCG    A  + +M+ E D      L+S               
Sbjct: 482 GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKD------LVS--------------- 520

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                     W  MI+GY  +   +EA+  F++MR +G+  D  +  S+L ACS  G L+
Sbjct: 521 ----------WTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLD 570

Query: 322 HG 323
            G
Sbjct: 571 EG 572



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C +  ++  G+++H H L+ G  +    +AN L+ MY++CG    A LLFD +
Sbjct: 455 MACILPACASLAALERGQEIHGHILRNG-FSLDRHVANALVDMYLKCGALGLARLLFDMI 513

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P ++  SW  MI G+   G+  +++  FN M     + ++ S+  ++   + +G L    
Sbjct: 514 PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGW 573

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
             FN M     I   S  +  + +  AR A  L K      +  ++ DA I   ++  C 
Sbjct: 574 GFFNMMRNNCCIEPKSEHYACIVDLLAR-AGNLSKAYKFIKMMPIEPDATIWGALLCGCR 632

Query: 184 DLAALEYGKQIHSHIL 199
               ++  +++  H+ 
Sbjct: 633 IYHDVKLAEKVAEHVF 648


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 214/423 (50%), Gaps = 41/423 (9%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N +I+ + K G+ + + ++F+ M ++N FS+N +IS   + G +  +  LF+ MP +
Sbjct: 60  FIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEK 119

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           +  +WNSMI  + ++    EA+  F  ++ D       + +   + + AC+ L  L+ G 
Sbjct: 120 DQCSWNSMIAGFAQHDRFEEALDWFVRMHRD---DFVLNDYSFGSGLSACSRLKDLKLGA 176

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH  I  +    D  +GS L++ Y K                               CG
Sbjct: 177 QIHGLISKSKYSLDVFMGSGLIDFYSK-------------------------------CG 205

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  ARRVFD   + + V WN +I+ Y  N    EAL  F +M   G   D  TLASV+S
Sbjct: 206 LVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVS 265

Query: 313 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           AC++L   + G Q+H    K     +D+I+ +AL+D Y+K G  ++A  +F  + V + +
Sbjct: 266 ACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAV 325

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              TM++ Y+    ++ A+ +F T+  K ++SWN++I G +QNG   EAL LF  + +  
Sbjct: 326 SETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRES 385

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCKCG 485
           +    ++  ++++A AN++ LELG Q  + V   G       + D  +  SL+D Y KCG
Sbjct: 386 VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCG 445

Query: 486 FIK 488
            ++
Sbjct: 446 SVE 448



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 145/533 (27%), Positives = 228/533 (42%), Gaps = 112/533 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL  C    S    + +H   ++         I NRL+ +Y +CG    A  +FD M
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVF-IQNRLIDVYGKCGYLDYARKVFDRM 85

Query: 68  PRRNCFS-------------------------------WNAMIEGFMKLGHKEKSLQLFN 96
             RN FS                               WN+MI GF +    E++L  F 
Sbjct: 86  SERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFV 145

Query: 97  VMPQK----NDFSWNM-----------------------------------LISGFAKAG 117
            M +     ND+S+                                     LI  ++K G
Sbjct: 146 RMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCG 205

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            +  AR +F+ M  +N ++WN +I CY +NG A EA+  F  +        + D   LA+
Sbjct: 206 LVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTE---LGFKPDEVTLAS 262

Query: 178 VIGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           V+ ACA LAA + G QIH+ ++  +    D +LG++LV++Y KCG  N A  V + M   
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           +    + ++SGYA    +  AR +F        V WN++I+GY  N E+ EAL LF  ++
Sbjct: 323 NAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLK 382

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI------DDVIVASALLDTYS 350
           R  V     T  ++L+A ++L  LE G+Q H H  K G         D+ V ++L+D Y 
Sbjct: 383 RESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYM 442

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G   +  ++F  +   D +  NTM                               I+G
Sbjct: 443 KCGSVEEGLRVFENMVEKDHVSWNTM-------------------------------IIG 471

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
            +QNG  +EAL+LF  M +   + D  ++   + AC++   +E G + F  +T
Sbjct: 472 YAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMT 524



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 156/318 (49%), Gaps = 32/318 (10%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+   A ++  C  L +    + +H  ++      +  + + L+++YGKCG  + A +V 
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           + M E + F  +++IS     G ++++  +F    +     WNSMI+G+  ++   EAL 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
            F +M R+  + +  +  S LSACS L  L+ G Q+HG   K     DV + S L+D YS
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G+   A ++F  ++  + +  N +IT Y                              
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCY------------------------------ 232

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDS 469
             QNG  IEAL+ F  M +L  + D+ +LASV+SACA +++ + G Q+ ARV       +
Sbjct: 233 -EQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291

Query: 470 DQIISTSLVDFYCKCGFI 487
           D I+  +LVD Y KCG +
Sbjct: 292 DLILGNALVDMYAKCGRV 309



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 161/408 (39%), Gaps = 102/408 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C T  +   G Q+H   +K     + L + N L+ MY +CG   +A  +FD M
Sbjct: 260 LASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRM 319

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P RN  S   M+ G+ K    + +  +F  + QK+  SWN LI+G+ + GE + A  LF 
Sbjct: 320 PVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFR 379

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            + R +    +                                  +    ++ A A+LA 
Sbjct: 380 MLKRESVCPTH----------------------------------YTFGNLLNASANLAD 405

Query: 188 LEYGKQIHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           LE G+Q HSH++ +G  F S       +G+SL+++Y KCG      +V   M E D    
Sbjct: 406 LELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSW 465

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + +I GYA                                N    EAL LF KM  +G  
Sbjct: 466 NTMIIGYAQ-------------------------------NGYGMEALELFQKMLESGEK 494

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+   L ACS  G +E G++                         + G+       
Sbjct: 495 PDHVTMIGTLCACSHAGLVEEGRRY------------------FFSMTKEHGL------- 529

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMI 408
              L V D      M+ +    G +E+AK +  +MP +   + W+S++
Sbjct: 530 ---LPVKDH--YTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLL 572


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 198/377 (52%), Gaps = 41/377 (10%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           + K G ++ AR +F+ +  R+A++W SMI  Y  NGF  EA+ L++++++D    +Q D+
Sbjct: 2   YGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDAD---GIQPDS 58

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
               + + AC  LA    GK IH+ I+ + ++                            
Sbjct: 59  ITFTSALLACTKLAD---GKAIHARIVSSNME---------------------------- 87

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                DF  SALI+ YA CG ++ AR+ F++  +   V W S+++ Y+      EAL L+
Sbjct: 88  ----SDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLY 143

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            +M   GV  D  T  + L AC+SLG L+ GK +H    + G    ++V +ALL  Y+K 
Sbjct: 144 GRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECG-FQSLVVHTALLTMYAKC 202

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G    A  +F+ L   +  + N ++T+Y+ CG +E AK  F     K L+SWN+MI   +
Sbjct: 203 GELDAARAVFNRL-ASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYA 261

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQ 471
           Q+G   EALDL+  M    +  D+ ++AS +SACA   SL+LG ++ +RV       S  
Sbjct: 262 QHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSL 321

Query: 472 IISTSLVDFYCKCGFIK 488
           ++ T+LV+ Y +CG ++
Sbjct: 322 MVQTALVNMYGRCGRLE 338



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 209/446 (46%), Gaps = 72/446 (16%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------- 100
           MY +CG+  +A  +FD +  R+  SW +MI  +   G  +++L L+  M           
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 101 --------------------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134
                                     ++DF  + LI+ +A+ G++ +AR  F  +  ++ 
Sbjct: 61  FTSALLACTKLADGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHV 120

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           + W S++  YV+ G  REA+ L+  ++    E +  D     T +GACA L AL+ GK I
Sbjct: 121 VCWTSLMTAYVQTGHYREALDLYGRMDH---EGVHADGVTYVTALGACASLGALKEGKAI 177

Query: 195 HSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           H  + V+   F S V+ ++L+ +Y KCG+ ++A  V N +   +    +AL++ YA CG 
Sbjct: 178 H--LRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLAS-NVAVQNALVTMYAKCGS 234

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           +  A+  F+ +     V WN+MI  Y  +    EAL L+  M   GVL D  T+AS LSA
Sbjct: 235 LELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSA 294

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+  G L+ G+++H    K    +    +S ++ T                         
Sbjct: 295 CAISGSLQLGREIHSRVLK----NQSFQSSLMVQT------------------------- 325

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
             ++ +Y  CGR+E A+ +F  M  + ++SW +M    +Q G   + LDL+  M    +R
Sbjct: 326 -ALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIR 384

Query: 434 MDKFSLASVISACANISSLELGEQVF 459
            ++ +  S++  C++   L  G + F
Sbjct: 385 PNEITFTSILVGCSHAGLLARGVECF 410



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 118/271 (43%), Gaps = 64/271 (23%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y  CG + +AR+VFD   +  +V W SMIS Y +N    EAL L+ +M  +G+  D+ T 
Sbjct: 2   YGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITF 61

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            S L AC+ L     GK +H            IV+S          M SD          
Sbjct: 62  TSALLACTKLA---DGKAIHAR----------IVSS---------NMESD---------- 89

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
               + + +I +Y+ CG +  A+  F  + NK ++ W S++    Q G   EALDL+  M
Sbjct: 90  ---FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLYGRM 146

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG--------------------- 466
           +   +  D  +  + + ACA++ +L+ G+ +  RV+  G                     
Sbjct: 147 DHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCGELD 206

Query: 467 --------LDSDQIISTSLVDFYCKCGFIKM 489
                   L S+  +  +LV  Y KCG +++
Sbjct: 207 AARAVFNRLASNVAVQNALVTMYAKCGSLEL 237



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/495 (21%), Positives = 193/495 (38%), Gaps = 132/495 (26%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK +H   +   + +    + + L+ MY RCG+ + A   F+++  ++   W +++  ++
Sbjct: 74  GKAIHARIVSSNMESDF--VGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYV 131

Query: 84  KLGHKEKSLQLFNVMPQKNDFS-------------------------------------- 105
           + GH  ++L L+  M  +   +                                      
Sbjct: 132 QTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVV 191

Query: 106 WNMLISGFAKAGELKTARTLFNDMP------------------------------RRNAI 135
              L++ +AK GEL  AR +FN +                               R++ +
Sbjct: 192 HTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLV 251

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+MI  Y ++G  REA+ L++ + S   + +  D   +A+ + ACA   +L+ G++IH
Sbjct: 252 SWNAMIGAYAQHGLGREALDLYQTMTS---QGVLPDEVTIASSLSACAISGSLQLGREIH 308

Query: 196 SHILVNGLDFDSVL--GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           S +L N   F S L   ++LVN+YG+CG   +A  +   M + D                
Sbjct: 309 SRVLKN-QSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRD---------------- 351

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                           + W +M S Y       + L L+ +M  +G+  +  T  S+L  
Sbjct: 352 ---------------VLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVG 396

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVAS------ALLDTYSKRGMPSDACKLFSELKV 367
           CS  G L  G +     C + +  +  V         ++D   + G   DA  L   +  
Sbjct: 397 CSHAGLLARGVE-----CFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPY 451

Query: 368 Y-DTILLNTMITVYSSCGRIEDAKHIFRTM--------PNKSLISWNSMIVGLSQNGSPI 418
             D++     +TV  SC    DA    R           N SL S  S I   +  G P 
Sbjct: 452 QPDSV---AWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSI--FTAAGLPQ 506

Query: 419 EALDLFCNMNKLDLR 433
           EAL++  +M ++ L+
Sbjct: 507 EALEVQLSMKEMGLK 521



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 109/238 (45%), Gaps = 18/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L +C    S+ +G+++H   LK     S+L +   L+ MY RCG    A  +F++M
Sbjct: 288 IASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDM 347

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            +R+  SW AM   + + GH ++ L L+  M     + N+ ++  ++ G + AG L    
Sbjct: 348 GQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGV 407

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F +M   + +      +  M+    R+G  R+A  L + +        Q D+    TV
Sbjct: 408 ECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMP------YQPDSVAWLTV 461

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +G+C   +  +  K+      V  LD ++  L S L +++   G    A +V   MKE
Sbjct: 462 LGSCKTHSDADTAKRAARR--VKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKE 517



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 4/107 (3%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y  CG +E+A+ +F  + N+  +SW SMI   + NG   EALDL+  M+   ++ D  +
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             S + AC  ++    G+ + AR+    ++SD  + ++L++ Y +CG
Sbjct: 61  FTSALLACTKLAD---GKAIHARIVSSNMESD-FVGSALINMYARCG 103


>gi|297830544|ref|XP_002883154.1| hypothetical protein ARALYDRAFT_479395 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328994|gb|EFH59413.1| hypothetical protein ARALYDRAFT_479395 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 614

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/475 (29%), Positives = 239/475 (50%), Gaps = 48/475 (10%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           H+  +K G   +T+  +N+L+ +Y + G   +A  +FDEMP RN +SWNA+I  ++K  +
Sbjct: 11  HIRSIKTGSTLTTIS-SNQLVNLYSKNGLLREARNVFDEMPERNVYSWNAVIAAYVKFNN 69

Query: 88  KEKSLQLFNVMPQKNDF-SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
            +++ +LF     + D  ++N L+SGFAK                               
Sbjct: 70  VKEARELFKRDNCERDLITYNTLLSGFAKT------------------------------ 99

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G   EA+++F E++    + +  D F + T++   A L  + YG+Q+H  ++  G D  
Sbjct: 100 DGCESEAIKMFGEMHRKEKDEIWIDDFSVTTMVKLSAKLTNVFYGEQLHGVMVKTGNDAT 159

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
               SSL+++Y KCG F     V N   ++  D    +A+I+ Y   G ++ A  +F R 
Sbjct: 160 KFSVSSLIHMYSKCGKFKEVCNVFNGSCVEFVDSVARNAMIAAYCREGDIDKALSIFWRN 219

Query: 265 TD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            +   ++ WN++ISGY  N  + EAL +   M  +G+  D  T A+VL+  SSL  L+ G
Sbjct: 220 PELNDTISWNTLISGYAQNGYEEEALKIAVSMEESGLKWDEHTFAAVLNVLSSLKSLKIG 279

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMITVY 380
           K+VH    K G   +  V+S ++D Y K G       A  L+    +Y T   ++MI  Y
Sbjct: 280 KEVHARLLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYST---SSMIVGY 336

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVG---LSQNGSPIE-ALDLFCNMNKLDLRMDK 436
           SS G++ +AK +F ++  K+L+ W +M +G   L Q  S +E A D   N   +    D 
Sbjct: 337 SSQGKMGEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARDFIANETNVP---DS 393

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             + SV+ AC+  + +E G+++       G+  D+ + T+ VD Y KCG ++  E
Sbjct: 394 LVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAE 448



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 207/417 (49%), Gaps = 39/417 (9%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFN--VMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           FS +++I  + K G  ++   +FN   +   +  + N +I+ + + G++  A ++F   P
Sbjct: 161 FSVSSLIHMYSKCGKFKEVCNVFNGSCVEFVDSVARNAMIAAYCREGDIDKALSIFWRNP 220

Query: 131 RRN-AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
             N  I+WN++I  Y +NG+  EA+++   +       L+ D    A V+   + L +L+
Sbjct: 221 ELNDTISWNTLISGYAQNGYEEEALKIAVSMEES---GLKWDEHTFAAVLNVLSSLKSLK 277

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            GK++H+ +L NG   +  + S +V++Y KCG+   A     +    + +  S++I GY+
Sbjct: 278 IGKEVHARLLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSTSSMIVGYS 337

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLA 308
           + GKM +A+R+FD  ++ + V+W +M  GY++  +    L L      N   + D+  + 
Sbjct: 338 SQGKMGEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARDFIANETNVPDSLVMV 397

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           SVL ACS   ++E GK++HGH+ + G++ D  + +A +D YSK                 
Sbjct: 398 SVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSK----------------- 440

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG +E A+ IF     +  + +N+MI G + +G   ++  LF +M 
Sbjct: 441 --------------CGNVEYAERIFDISFERDTVMYNTMIAGYAHHGHEAKSFQLFEDMT 486

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKC 484
           +   + D+ +  +++SAC +   +  GE+ F + +    +  +    T ++D Y K 
Sbjct: 487 EGGFKPDEITFMALLSACRHRGLVLAGEKYFKSMIEAYNISPEAGHYTCMIDLYGKA 543



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 141/320 (44%), Gaps = 69/320 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L   ++  S+ +GK++H   LK G  ++   +++ ++ +Y +CGN           
Sbjct: 263 FAAVLNVLSSLKSLKIGKEVHARLLKNGSYSNKF-VSSGIVDVYCKCGN----------- 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                          MK       L  F      N +S + +I G++  G++  A+ LF+
Sbjct: 311 ---------------MKYAESAHLLYGFG-----NLYSTSSMIVGYSSQGKMGEAKRLFD 350

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV--ERLQCDAFILATVIGACADL 185
            +  +N + W +M   Y+     R+   +  EL  D +  E    D+ ++ +V+GAC+  
Sbjct: 351 SLSEKNLVVWTAMFLGYLN---LRQPDSVL-ELARDFIANETNVPDSLVMVSVLGACSLQ 406

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
           A +E GK+IH H L  G+  D  L ++ V++Y K                          
Sbjct: 407 AYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSK-------------------------- 440

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
                CG +  A R+FD + +  +VM+N+MI+GY  +  + ++  LF  M   G   D  
Sbjct: 441 -----CGNVEYAERIFDISFERDTVMYNTMIAGYAHHGHEAKSFQLFEDMTEGGFKPDEI 495

Query: 306 TLASVLSACSSLGFLEHGKQ 325
           T  ++LSAC   G +  G++
Sbjct: 496 TFMALLSACRHRGLVLAGEK 515



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 19/203 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C+    +  GK++H H L+ GIL     +    + MY +CGN   A  +FD  
Sbjct: 396 MVSVLGACSLQAYMEPGKEIHGHSLRTGILMDK-KLVTAFVDMYSKCGNVEYAERIFDIS 454

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLIS-----GFAKAGE 118
             R+   +N MI G+   GH+ KS QLF  M +     ++ ++  L+S     G   AGE
Sbjct: 455 FERDTVMYNTMIAGYAHHGHEAKSFQLFEDMTEGGFKPDEITFMALLSACRHRGLVLAGE 514

Query: 119 --LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              K+    +N  P   A  +  MI  Y +     +A+ L + +  D VE+   DA IL 
Sbjct: 515 KYFKSMIEAYNISPE--AGHYTCMIDLYGKANRLDKAIELMEGI--DQVEK---DAVILG 567

Query: 177 TVIGACADLAALEYGKQIHSHIL 199
             + AC+     E  K++   +L
Sbjct: 568 AFLNACSWNKNTELVKEVEEKLL 590


>gi|356532255|ref|XP_003534689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 948

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 224/477 (46%), Gaps = 66/477 (13%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C    S     QLH H +K   L +   I N L+ MY++CG  T A  +F  +   +
Sbjct: 149 MKACGCLASTRFALQLHAHVIKLH-LGAQTCIQNSLVDMYIKCGAITLAETVFLNIESPS 207

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
            F WN+M                               I G+++      A  +F  MP+
Sbjct: 208 LFCWNSM-------------------------------IYGYSQLYGPYEALHVFTRMPK 236

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
            + ++WN++I  + + G     +  + E+ +      + +     +V+ ACA ++ L++G
Sbjct: 237 HDHVSWNTLISVFSQYGHGIRCLSTYVEMCN---LGFKPNFMTYGSVLSACASISDLKWG 293

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H+ IL      D+ LGS L+++Y KCG    A +V N + E +    + LISG A  
Sbjct: 294 AHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQF 353

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G  +D                               AL LF++MR+  V+ D  TL ++L
Sbjct: 354 GLGDD-------------------------------ALALFNQMRQASVVLDEFTLVTIL 382

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
             CS   +   G+ +HG+A K G+   V V +A++  Y++ G    A   F  + + DTI
Sbjct: 383 GVCSGQNYAATGELLHGYAIKNGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTI 442

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
               MIT +S  G I+ A+  F   P +++I+WNSM+    Q+G   E + L+  M    
Sbjct: 443 SWTAMITAFSQNGDIDRARQCFDMTPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKA 502

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ D  + A+ I ACA++++++LG QV + VT  GL SD  ++ S+V  Y +CG IK
Sbjct: 503 VKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIK 559



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 174/399 (43%), Gaps = 75/399 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C+  +    G+ LH + +K G ++S++P+ N ++ MY RCG+           
Sbjct: 378 LVTILGVCSGQNYAATGELLHGYAIKNG-MDSSVPVGNAIITMYARCGD----------- 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                EK+   F  MP ++  SW  +I+ F++ G++  AR  F+
Sbjct: 426 --------------------TEKASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFD 465

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
             P RN I WNSM+  Y+++GF+ E ++L+  + S  V+    D    AT I ACADLA 
Sbjct: 466 MTPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKP---DWVTFATSIRACADLAT 522

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           ++ G Q+ SH+   GL  D  + +S+V +Y +CG                          
Sbjct: 523 IKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCG-------------------------- 556

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                ++ +AR+VFD     + + WN+M++ +  N    +A+  +  M R     D  + 
Sbjct: 557 -----QIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISY 611

Query: 308 ASVLS-ACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDT---YSKRGMPSDACKLF 362
            +VLS      G L+  K  + G   K     +  V  ALL     +    +   A K  
Sbjct: 612 VAVLSDLLGRAGLLDQAKNLIDGMPFK----PNATVWGALLGACRIHHDSILAKTAAKKL 667

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            EL V D+     +  +Y+  G +E+   + + M  K +
Sbjct: 668 MELNVEDSGGYVLLANIYTESGELENVADMRKLMKVKGI 706



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 6/301 (1%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            +++H+ ++++GLD    L ++L+++Y  CG  + A  V       + F  + ++  + +
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFCVFREANHANIFTWNTMLHAFFD 82

Query: 251 CGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE----DA 304
            G+M +A  +FD        SV W +MISGY  N     ++  F  M R+   +    D 
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            +    + AC  L       Q+H H  K+ +     + ++L+D Y K G  + A  +F  
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLN 202

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           ++       N+MI  YS      +A H+F  MP    +SWN++I   SQ G  I  L  +
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPKHDHVSWNTLISVFSQYGHGIRCLSTY 262

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M  L  + +  +  SV+SACA+IS L+ G  + AR+  +    D  + + L+D Y KC
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322

Query: 485 G 485
           G
Sbjct: 323 G 323



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
            +++H      G+   + + + LL  YS  GM  DA  +F E    +    NTM+  +  
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFCVFREANHANIFTWNTMLHAFFD 82

Query: 383 CGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNM---NKLDLR-MDK 436
            GR+ +A+++F  MP+  +  +SW +MI G  QNG P  ++  F +M   +  D++  D 
Sbjct: 83  SGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDP 142

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           FS    + AC  ++S     Q+ A V  + L +   I  SLVD Y KCG I + E
Sbjct: 143 FSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAE 197


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 145/528 (27%), Positives = 248/528 (46%), Gaps = 113/528 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L+ C     +   + +H + +K G L   + ++  L+ +Y +CG   DA LLFD M
Sbjct: 186 LAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDVFVSGALVNIYSKCGRMRDARLLFDWM 244

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG----------- 112
             R+   WN M++G+++LG ++++ QLF+   +     ++FS  ++++G           
Sbjct: 245 RERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLEL 304

Query: 113 --------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                                     ++K G    AR +FNDM   + I+WNSMI    +
Sbjct: 305 GKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQ 364

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILA-----TVIGACADLAALEYGKQIHSHILVN 201
           +    E+V LF +L   L E L+ D F LA     T   AC  L  L+ GKQIH+H +  
Sbjct: 365 SSLEEESVNLFIDL---LHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA 421

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G D D  + S ++++Y KC                               G M +A  VF
Sbjct: 422 GFDSDLHVNSGILDMYIKC-------------------------------GDMVNAGIVF 450

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           +  +    V W SMISG + N  + +AL ++H+MR++ V+ D  T A+++ A S +  LE
Sbjct: 451 NYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALE 510

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G+Q+H +  K+  + D  V ++L+D Y+K                              
Sbjct: 511 QGRQLHANVIKLDCVSDPFVGTSLVDMYAK------------------------------ 540

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG IEDA  +F+ M  +++  WN+M+VGL+Q+G+  EA++LF +M    +  D+ S   
Sbjct: 541 -CGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIG 599

Query: 442 VISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++SAC++   + E  E + +     G++ +    + LVD   + G ++
Sbjct: 600 ILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQ 647



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 240/537 (44%), Gaps = 118/537 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++  + H++ +GK  H   +  G       ++N LL MY +CG+ + A  +FD  P R
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHF-LSNNLLTMYSKCGSLSSARQVFDTTPER 141

Query: 71  NCFSWNAMIEGFMKL-----GHKEKSLQLFNVMPQ------------------------- 100
           +  +WNA++  +        G+ ++ L LF ++                           
Sbjct: 142 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 101 ---------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                    K    W++ +SG     ++K G ++ AR LF+ M  R+ + WN M+  YV+
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 261

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC--ADLAALEYGKQIHSHILVNGLD 204
            G  +EA +LF E +      L+ D F +  ++  C  A    LE GKQ+H   + +GLD
Sbjct: 262 LGLEKEAFQLFSEFHR---SGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLD 318

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D  + +SLVN+Y K G    A +V N MK  D      LIS                  
Sbjct: 319 SDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD------LIS------------------ 354

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL-----SACSSLGF 319
                  WNSMIS    ++ + E++ LF  +   G+  D  TLAS+       AC  L  
Sbjct: 355 -------WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVL 407

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ GKQ+H HA K G   D+ V S +LD Y K                            
Sbjct: 408 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIK---------------------------- 439

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              CG + +A  +F  +     ++W SMI G   NG+  +AL ++  M +  +  D+++ 
Sbjct: 440 ---CGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTF 496

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           A++I A + +++LE G Q+ A V  +   SD  + TSLVD Y KCG I+ D Y L +
Sbjct: 497 ATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE-DAYRLFK 552


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 149/513 (29%), Positives = 230/513 (44%), Gaps = 104/513 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C +  +++ G+ +H   +  G L S   IA  L+ MY++CG    AL +FD+M   
Sbjct: 61  LLKTCASLSNLYHGRTIHASIVTMG-LQSDPYIATSLINMYVKCGLLGSALQVFDKMSES 119

Query: 71  -----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM----------------- 108
                +   WN +I+G+ K GH E+ L  F  M    + SW M                 
Sbjct: 120 RDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRM---QELSWYMAGRQIHGYIIRNMFEGD 176

Query: 109 ------LISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCYVRNGFAREAVRLF---K 158
                 LI  ++       A +LF  +  R N +AWN MI  +V NG   +++ L+   K
Sbjct: 177 PYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAK 236

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
             N  LV      AF       AC+    L++G+Q+H                       
Sbjct: 237 NENCKLVSASFTGAFT------ACSHGEVLDFGRQVHC---------------------- 268

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                     V+ M  + D +  ++L++ YA  G + DA++VFD+  D    + N+MIS 
Sbjct: 269 ---------DVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 319

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           +I N    +AL L++KM+      D+ T++S+LS CS +G  + G+ VH    K  +  +
Sbjct: 320 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 379

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           V + SALL                               T+Y  CG  EDA  +F TM  
Sbjct: 380 VAIQSALL-------------------------------TMYYKCGSTEDADSVFYTMKE 408

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           + +++W SMI G  QN    +ALDLF  M K  ++ D   + SVISA   + ++ELG  +
Sbjct: 409 RDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLI 468

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
                  GL+SD  ++ SLVD Y K GF +  E
Sbjct: 469 HGFAIKRGLESDVFVACSLVDMYSKFGFAESAE 501



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 226/505 (44%), Gaps = 106/505 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR-NCFSWNAMIEGF 82
           G+Q+H + ++  +      +   L+ MY  C  P +A  LF ++  R N  +WN MI GF
Sbjct: 161 GRQIHGYIIRN-MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGF 219

Query: 83  MKLGHKEKSLQLFNVMPQKN---------------------DFSWNM------------- 108
           ++ G  EKSL+L+++   +N                     DF   +             
Sbjct: 220 VENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDP 279

Query: 109 -----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                L++ +AK+G ++ A+ +F+ +  +     N+MI  ++ NG A +A+ L+ ++ + 
Sbjct: 280 YVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAG 339

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
                  D+F +++++  C+ + + ++G+ +H+ ++   +  +  + S+L+ +Y K    
Sbjct: 340 ---ETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYK---- 392

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      CG   DA  VF    +   V W SMI+G+  N 
Sbjct: 393 ---------------------------CGSTEDADSVFYTMKERDVVAWGSMIAGFCQNR 425

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              +AL LF  M + GV  D+  + SV+SA   L  +E G  +HG A K G+  DV VA 
Sbjct: 426 RFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVAC 485

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +L+D YSK G    A  +FS +   + +  N+MI+ Y                      S
Sbjct: 486 SLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCY----------------------S 523

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W         NG P  +++L   + +    +D  S+ +V+ A +++++L  G+ + A   
Sbjct: 524 W---------NGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQI 574

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            + + SD  +  +L+D Y KCG +K
Sbjct: 575 RLQIPSDLQVENALIDMYVKCGCLK 599



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 227/520 (43%), Gaps = 108/520 (20%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C+    +  G+Q+H   +K    +    +   LL MY + G+  DA  +FD++  +   
Sbjct: 253 ACSHGEVLDFGRQVHCDVIKMNFQDDPY-VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVE 311

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG----------------- 112
             NAMI  F+  G    +L L+N M       + F+ + L+SG                 
Sbjct: 312 LRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEV 371

Query: 113 ------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                             + K G  + A ++F  M  R+ +AW SMI  + +N   ++A+
Sbjct: 372 IKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDAL 431

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            LF+ +     E ++ D+ ++ +VI A   L  +E G  IH   +  GL+ D  +  SLV
Sbjct: 432 DLFRAMEK---EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLV 488

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           ++Y K G                          +A   +M     VF    + + V WNS
Sbjct: 489 DMYSKFG--------------------------FAESAEM-----VFSSMPNKNLVAWNS 517

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MIS Y  N     ++ L  ++ ++G   D+ ++ +VL A SS+  L  GK +H +  ++ 
Sbjct: 518 MISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ 577

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  D+ V +AL+D Y K                               CG ++ A+ IF 
Sbjct: 578 IPSDLQVENALIDMYVK-------------------------------CGCLKYAQLIFE 606

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP ++L++WNSMI G   +G+  EA+ LF  M + +   D+ +  ++I++C++   +E 
Sbjct: 607 NMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEE 666

Query: 455 GEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           G  +F  + I  G++       S+VD   + G  ++D+ Y
Sbjct: 667 GLNLFQLMRIEYGVEPRMEHYASVVDLLGRAG--RLDDAY 704



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 168/405 (41%), Gaps = 91/405 (22%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           NS I   V+ G   +A+ L  +        L    F   +++  CA L+ L +G+ IH+ 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSA---LTTAKFTFPSLLKTCASLSNLYHGRTIHAS 80

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD--------------- 237
           I+  GL  D  + +SL+N+Y KCG   SA QV + M E     PD               
Sbjct: 81  IVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYG 140

Query: 238 -------DFCL-----------------------------SALISGYANCGKMNDARRVF 261
                   FC                              +ALI  Y++C +  +A  +F
Sbjct: 141 HFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLF 200

Query: 262 DRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
            +  + S+++ WN MI G++ N    ++L L+   +       +++     +ACS    L
Sbjct: 201 GKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVL 260

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           + G+QVH    K+   DD  V ++LL  Y+K G   DA K+F ++   +  L N MI+ +
Sbjct: 261 DFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAF 320

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
              GR  D                               AL L+  M   +  +D F+++
Sbjct: 321 IGNGRAYD-------------------------------ALGLYNKMKAGETPVDSFTIS 349

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           S++S C+ + S + G  V A V    + S+  I ++L+  Y KCG
Sbjct: 350 SLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCG 394



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 119/283 (42%), Gaps = 58/283 (20%)

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           R T+ S  + NS I   +   + ++AL L  K   + +     T  S+L  C+SL  L H
Sbjct: 15  RQTEVSPSI-NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYH 73

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL----------------- 365
           G+ +H     +G+  D  +A++L++ Y K G+   A ++F ++                 
Sbjct: 74  GRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVI 133

Query: 366 -----------------------------KVYDTILLN----------TMITVYSSCGRI 386
                                        +++  I+ N           +I +YSSC R 
Sbjct: 134 DGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRP 193

Query: 387 EDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            +A  +F  + N+S +++WN MI G  +NG   ++L+L+      + ++   S     +A
Sbjct: 194 MEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTA 253

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           C++   L+ G QV   V  +    D  + TSL+  Y K G ++
Sbjct: 254 CSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVE 296


>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
 gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
          Length = 730

 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 234/518 (45%), Gaps = 80/518 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C++   +  GK++H   +  G +   L +AN L+ MY  CG+  DA   FD M RRN
Sbjct: 86  LGACSSAEFLETGKKIHAQIVA-GEVELELNLANSLISMYSNCGSLVDAKRFFDGMNRRN 144

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW------ 106
             SWN +I  F   GH  +++ LF  M ++                    D S       
Sbjct: 145 VVSWNCIIAAFSGHGHYREAVDLFYEMEKQGFKPDRVSFVSVFSACSILEDLSQGRRIHA 204

Query: 107 --------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                         N L++ +A+ G L  AR +F+ +  RN ++W SMI  Y +     +
Sbjct: 205 RFCDGRMKLDVSIGNTLLNMYARCGSLDDARLVFDSITSRNIVSWTSMIAAYAQFDRFHD 264

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A  +F+++       +  +     T++GACA+  AL+  ++IHS +L +G+         
Sbjct: 265 AYEVFQKMG------VAPNEVTFITILGACAEARALKQAREIHSLVLTSGI--------- 309

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR--TTDTSSV 270
                               +++      + LI+ YA CG ++DA+ VF+   T + + V
Sbjct: 310 --------------------LEKQQLTVGNGLINTYAKCGSLSDAKTVFESMATAERNVV 349

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W S+I+         EAL LFH+M   G+  +  T  +VLSAC+ LG     + +HG  
Sbjct: 350 TWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGSTREARYLHGLI 409

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G   D +V + L++ + K GM  DA  +F  ++  + +    M+  Y     I  A 
Sbjct: 410 VSGGYDRDTVVCNGLINMFGKCGMLEDARAIFERMRSRNLVTWTGMLGAYIQQQEIRQAV 469

Query: 391 HIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            +F+ M     K +++W +M+   +Q G   EAL L+  M    +  D+ +  +++ AC+
Sbjct: 470 SLFQQMERISYKDVMAWTTMVAAYAQAGYADEALKLYARMGLEGVAPDEITFVNLLHACS 529

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            + + + G  + + +   GL S +++   LV FY  CG
Sbjct: 530 RMGAKKEGWTIRSHILERGLPSSRVLGNGLVCFYGACG 567



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 222/504 (44%), Gaps = 109/504 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           +++H    + GI + TL + N L+QMY +CGN  +A   FD +  +N FSW+ +I  + +
Sbjct: 1   RRIHSELARTGIDSETL-LGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYSR 59

Query: 85  LGHKEKSLQLFNVMP-QKNDFSW-----------------------------------NM 108
                ++++LF+ M  + N  ++                                   N 
Sbjct: 60  HRLSREAIELFHAMDVRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNLANS 119

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LIS ++  G L  A+  F+ M RRN ++WN +I  +  +G  REAV LF E+     +  
Sbjct: 120 LISMYSNCGSLVDAKRFFDGMNRRNVVSWNCIIAAFSGHGHYREAVDLFYEMEK---QGF 176

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + D     +V  AC+ L  L  G++IH+      +  D  +G++L+N+Y           
Sbjct: 177 KPDRVSFVSVFSACSILEDLSQGRRIHARFCDGRMKLDVSIGNTLLNMY----------- 225

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                               A CG ++DAR VFD  T  + V W SMI+ Y   +   +A
Sbjct: 226 --------------------ARCGSLDDARLVFDSITSRNIVSWTSMIAAYAQFDRFHDA 265

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALL 346
             +F KM   GV  +  T  ++L AC+    L+  +++H      G+++   + V + L+
Sbjct: 266 YEVFQKM---GVAPNEVTFITILGACAEARALKQAREIHSLVLTSGILEKQQLTVGNGLI 322

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISW 404
           +TY+K                               CG + DAK +F +M    +++++W
Sbjct: 323 NTYAK-------------------------------CGSLSDAKTVFESMATAERNVVTW 351

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            S+I      G P EAL LF  M    +  ++ +  +V+SACA++ S      +   +  
Sbjct: 352 TSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGSTREARYLHGLIVS 411

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
            G D D ++   L++ + KCG ++
Sbjct: 412 GGYDRDTVVCNGLINMFGKCGMLE 435



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/499 (24%), Positives = 214/499 (42%), Gaps = 79/499 (15%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +++ +  +C+    +  G+++H  F   G +   + I N LL MY RCG+  DA L+
Sbjct: 180 RVSFVS-VFSACSILEDLSQGRRIHARFCD-GRMKLDVSIGNTLLNMYARCGSLDDARLV 237

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN---VMPQKNDF---------------- 104
           FD +  RN  SW +MI  + +      + ++F    V P +  F                
Sbjct: 238 FDSITSRNIVSWTSMIAAYAQFDRFHDAYEVFQKMGVAPNEVTFITILGACAEARALKQA 297

Query: 105 -------------------SWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHC 143
                                N LI+ +AK G L  A+T+F  M    RN + W S+I  
Sbjct: 298 REIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFESMATAERNVVTWTSIIAA 357

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
               G  REA+ LF  +    +E +  +     TV+ ACADL +    + +H  I+  G 
Sbjct: 358 CGLCGHPREALALFHRME---LEGIPANEITFGTVLSACADLGSTREARYLHGLIVSGGY 414

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF-- 261
           D D+V+ + L+N++GKCG    A  +   M+  +    + ++  Y    ++  A  +F  
Sbjct: 415 DRDTVVCNGLINMFGKCGMLEDARAIFERMRSRNLVTWTGMLGAYIQQQEIRQAVSLFQQ 474

Query: 262 -DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
            +R +    + W +M++ Y       EAL L+ +M   GV  D  T  ++L ACS +G  
Sbjct: 475 MERISYKDVMAWTTMVAAYAQAGYADEALKLYARMGLEGVAPDEITFVNLLHACSRMGAK 534

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           + G  +  H  +                   RG+PS              +L N ++  Y
Sbjct: 535 KEGWTIRSHILE-------------------RGLPSS------------RVLGNGLVCFY 563

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
            +CG    AK +F  +  +   +WN+ I    Q+G   E+L LF  M    +  D+ +  
Sbjct: 564 GACGTWLQAKMVFENLAERDSAAWNAAIGVSGQHGFYDESLRLFERMVLEGMEPDEITFT 623

Query: 441 SVISACANISSLELGEQVF 459
           +V+ +C++   +E   + F
Sbjct: 624 NVLFSCSHSGEIERAWRWF 642


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 243/510 (47%), Gaps = 87/510 (17%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  I+  A +LQ C   +++ +G Q+H   +  G+ +    + +RLL++Y + G   DA 
Sbjct: 7   DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGV-DVCEFLGSRLLEVYCQTGCVEDAR 65

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------------PQ--------K 101
            +FD+M  RN FSW A++E +  LG  E++++LF +M            P+        K
Sbjct: 66  RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 125

Query: 102 N--------------DFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
           N               F  N  + G     F K G +  AR  F ++  ++   WN M+ 
Sbjct: 126 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 185

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH-ILVN 201
            Y   G  ++A+ +F+++   ++E ++ ++  +A+ + AC +L+ L +G++IH + I V 
Sbjct: 186 GYTSKGEFKKALNVFRKM---VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVE 242

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL--ISGYANCG------- 252
            LD D ++G+SLV+ Y KC     A +   M+K+ D    +A+  ++G+   G       
Sbjct: 243 ELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALE 302

Query: 253 ---KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
              +M+ A  VF   +    V+WNS+IS    +     AL L  +M  + V  +  T+ S
Sbjct: 303 FFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVS 362

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
            L ACS L  L  GK++H    + G+                     D C          
Sbjct: 363 ALPACSKLAALRQGKEIHQFIIRCGL---------------------DTCNF-------- 393

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             +LN++I +Y  CG I+ ++ IF  MP + L+SWN MI     +G  ++A++LF     
Sbjct: 394 --ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRT 451

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVF 459
           + L+ +  +  +++SAC++   +E G + F
Sbjct: 452 MGLKPNHITFTNLLSACSHSGLIEEGWKYF 481



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 204/399 (51%), Gaps = 47/399 (11%)

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           +F  + L+  + + G ++ AR +F+ M  RN  +W +++  Y   G   E ++LF  +  
Sbjct: 45  EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-- 102

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
            + E ++ D F+   V  AC++L     GK ++ ++L  G + +S +  S+++++ KCG 
Sbjct: 103 -VNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCG- 160

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                         +M+ ARR F+        MWN M+SGY S 
Sbjct: 161 ------------------------------RMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIV 341
            E  +AL +F KM   GV  ++ T+AS +SAC++L  L HG+++HG+  KV  +D D++V
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 250

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV--YSSCG----------RIEDA 389
            ++L+D Y+K      A + F  +K  D +  N M+ V  ++  G          R+  A
Sbjct: 251 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIA 310

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F  +  + ++ WNS+I   +Q+G  + ALDL   MN  ++ ++  ++ S + AC+ +
Sbjct: 311 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 370

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++L  G+++   +   GLD+   I  SL+D Y +CG I+
Sbjct: 371 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 409



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 133/312 (42%), Gaps = 63/312 (20%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           I A+++  C  L  L  G Q+H+ ++VNG+D    LGS L+ +Y + G    A ++ + M
Sbjct: 12  IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM 71

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            E                      R VF          W +++  Y    +  E + LF+
Sbjct: 72  SE----------------------RNVFS---------WTAIMEMYCGLGDYEETIKLFY 100

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            M   GV  D      V  ACS L     GK V+ +   +G   +  V  ++LD + K G
Sbjct: 101 LMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCG 160

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
               A + F E++  D  + N M++ Y+S G  + A ++FR M          ++ G+  
Sbjct: 161 RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKM----------VLEGVKP 210

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR-VTIIGLDSDQI 472
           N                       ++AS +SAC N+S L  G ++    + +  LDSD +
Sbjct: 211 NS---------------------ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 249

Query: 473 ISTSLVDFYCKC 484
           +  SLVD+Y KC
Sbjct: 250 VGNSLVDYYAKC 261



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 27/238 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   ++  GK++H   ++ G L++   I N L+ MY RCG+   +  +FD MP+R+
Sbjct: 364 LPACSKLAALRQGKEIHQFIIRCG-LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 422

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI  +   G    ++ LF        + N  ++  L+S  + +G ++     F 
Sbjct: 423 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 482

Query: 128 DMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M    A+      +  M+    R G   E +   +++        + +A +  +++GAC
Sbjct: 483 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMP------FEPNAAVWGSLLGAC 536

Query: 183 -----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 DLA  EY  + +   L      + VL   + N+Y   G +  A ++  +MKE
Sbjct: 537 RIHCNPDLA--EYAAR-YLFELEPQSSGNYVL---MANIYSAAGRWEDAAKIRCLMKE 588


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 236/518 (45%), Gaps = 107/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANR-LLQMYMRCGNPTDALLLFDEMPR 69
           LLQSC  +     GK LH   +KKG  N     AN  LL  Y++  +  DA  LFDEMP 
Sbjct: 50  LLQSCIRNGDCATGKYLHCEIIKKG--NCLDLFANNILLNFYVKYDSLPDAAKLFDEMPD 107

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---------------------------- 101
           RN  S+  +I+G+ +     +++ LF+ +  +                            
Sbjct: 108 RNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSV 167

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      + F    LI  ++  G  + AR +F+ +  ++ ++W  M+ CYV N   
Sbjct: 168 HACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECF 227

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            E+++LF  +    +   + + F  A+V+ AC  L     GK +H          +  +G
Sbjct: 228 EESLKLFSRMR---IVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVG 284

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
             L++LY K GD                               ++DA +VF+       +
Sbjct: 285 VELIDLYIKSGD-------------------------------VDDALQVFEEMPKDDVI 313

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+ MI+ Y  + +  EA+ +F +MRR  VL +  TLAS+L AC+SL  L+ G Q+H H 
Sbjct: 314 PWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHV 373

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            KVG+  +V V++AL+D Y+K                               CGR+E++ 
Sbjct: 374 VKVGLDMNVFVSNALMDMYAK-------------------------------CGRMENSL 402

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F   PN + +SWN++IVG  Q G+  +AL LF +M +  ++  + + +SV+ ACA I+
Sbjct: 403 QLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIA 462

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +LE G Q+ +       D + ++  +L+D Y KCG IK
Sbjct: 463 ALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIK 500



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 208/476 (43%), Gaps = 105/476 (22%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G  +H    K G  +S   +   L+  Y  CG    A  +FD +  ++  SW  M+  +
Sbjct: 163 LGFSVHACVYKLG-FDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSWNM------------------------------ 108
           ++    E+SL+LF+ M     + N+F++                                
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEEL 281

Query: 109 -----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                LI  + K+G++  A  +F +MP+ + I W+ MI  Y ++  + EA+ +F  +   
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRG 341

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           LV   Q   F LA+++ ACA L  L+ G QIH H++  GLD +  + ++L+++Y K    
Sbjct: 342 LVLPNQ---FTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAK---- 394

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      CG+M ++ ++F  + + + V WN++I GY+   
Sbjct: 395 ---------------------------CGRMENSLQLFSESPNCTDVSWNTVIVGYVQAG 427

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              +AL+LF  M    V     T +SVL AC+ +  LE G Q+H  + K     + +V +
Sbjct: 428 NGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN 487

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+D Y+K G   DA  +F  L+ +D +  N MI+                         
Sbjct: 488 ALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMIS------------------------- 522

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
                 G S +G   EAL  F +M + + + DK +   ++SAC+N   L+ G+  F
Sbjct: 523 ------GYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYF 572



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 47/282 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LLQ+C +   + +G Q+H H +K G L+  + ++N L+ MY +CG   ++L LF E 
Sbjct: 350 LASLLQACASLVDLQLGNQIHCHVVKVG-LDMNVFVSNALMDMYAKCGRMENSLQLFSES 408

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P     SWN +I G+++ G+ EK+L LF  M +                           
Sbjct: 409 PNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGS 468

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       KN    N LI  +AK G +K AR +F+ +   + ++WN+MI  Y  +G
Sbjct: 469 QIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHG 528

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++ F+ +   L    + D      ++ AC++   L+ G Q +   +V   D +  
Sbjct: 529 LYGEALKTFESM---LETECKPDKVTFVGILSACSNAGLLDRG-QAYFKSMVEEYDIEPC 584

Query: 209 LG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 247
               + +V L G+ G  + A ++++ +  EP      AL+S 
Sbjct: 585 AEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSA 626



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 116/315 (36%), Gaps = 62/315 (19%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           + +I  +++ +C        GK +H  I+  G   D    + L+N Y K      A ++ 
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           + M + +      LI GY+ C +                                +EA+ 
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRF-------------------------------SEAIG 131

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF +++  G   +    ++VL    S  + + G  VH    K+G   D  V +AL+D Y 
Sbjct: 132 LFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCY- 190

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                                         S CG  E A+ +F  +  K ++SW  M+  
Sbjct: 191 ------------------------------SVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
             +N    E+L LF  M  +  + + F+ ASV+ AC  +    +G+ V           +
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 471 QIISTSLVDFYCKCG 485
             +   L+D Y K G
Sbjct: 281 LFVGVELIDLYIKSG 295


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 210/413 (50%), Gaps = 34/413 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N+++  ++K G  + +  +F  + + + F WN +I G+++      A  +FN MP R+ +
Sbjct: 185 NSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEV 244

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN++I  + ++GF  + + +F E+ +   +    +     +V+ ACA  + L++G  +H
Sbjct: 245 SWNTLISIFSQHGFGVQCLAMFVEMCN---QGFSPNFMTYGSVLSACASTSDLKWGAHLH 301

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           + IL      D V G+ L+++Y K                               CG ++
Sbjct: 302 ARILRMEHSLDLVFGNGLIDMYAK-------------------------------CGCLD 330

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A+RVF    +   + WNS+I+G +      +AL+LF++MRR+ V+ D   L ++L  CS
Sbjct: 331 LAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCS 390

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
              +   G+ +HG+  K G+     V +A++  Y+K G    A  +F  + + +TI    
Sbjct: 391 GPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTA 450

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           MIT +S  G I  A+  F  MP +++++WNSM+    QNG   E L L+ +M    ++ D
Sbjct: 451 MITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPD 510

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             +  + I ACA+++ ++LG QV    T  GL  +  ++ S+V  Y +CG IK
Sbjct: 511 WITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIK 563



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 142/546 (26%), Positives = 247/546 (45%), Gaps = 100/546 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C +     +  QLH    K G    T  I N ++ MY++CG+   A  +F ++ R 
Sbjct: 152 VMKACGSLGDSRLAIQLHALVSKLGFGMETC-IQNSVVGMYVKCGDVDLAETVFFDIERP 210

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM- 129
           + F WN+MI G+ ++    K+LQ+FN MP++++ SWN LIS F++ G       +F +M 
Sbjct: 211 SLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMC 270

Query: 130 ------------------PRRNAIAW--------------------NSMIHCYVRNGFAR 151
                                + + W                    N +I  Y + G   
Sbjct: 271 NQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLD 330

Query: 152 EAVRLFKEL----------------------------NSDLVERLQCDAFILATVIGACA 183
            A R+FK L                            N      +  D FIL T++G C+
Sbjct: 331 LAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCS 390

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
                  G+ +H + + +G+   + +G++++ +Y KCGD + A+ V  +M   +    +A
Sbjct: 391 GPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTA 450

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I+ ++  G +  AR  FD   + + V WNSM+S Y+ N    E L L+  MR NGV  D
Sbjct: 451 MITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPD 510

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T  + + AC+ L  ++ G QV  HA K G+  +V VA++++  YS+       C L  
Sbjct: 511 WITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSR-------CGLIK 563

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           E                        AK+ F ++ +K LISWN+M+   +QNG  I+ +D 
Sbjct: 564 E------------------------AKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDT 599

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYC 482
           F +M K + + +  S  SV+S C+++  +  G+  F  +T + G+       + +VD   
Sbjct: 600 FEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLG 659

Query: 483 KCGFIK 488
           + G ++
Sbjct: 660 RAGLLE 665



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 209/476 (43%), Gaps = 66/476 (13%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           Q   TH S H+ ++LH   +  G L+S+L + N LL MY  CG   DA  +F E   RN 
Sbjct: 16  QCSFTHKSPHIARKLHAQLILSG-LDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNI 74

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
                                          F+WN +I     +  +  A  LF++MP R
Sbjct: 75  -------------------------------FTWNTMIRALVSSSRMSDAEKLFDEMPVR 103

Query: 133 --NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ-CDAFILATVIGACADLAALE 189
             ++++W +MI  Y +NGF   +   F  +  D  +  +  D F   +V+ AC  L    
Sbjct: 104 VKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSR 163

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
              Q+H+ +   G   ++ + +S+V +Y KCGD + A  V   ++ P  FC +++I GY+
Sbjct: 164 LAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYS 223

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
                  A ++F+R  +   V WN++IS +  +    + L +F +M   G   +  T  S
Sbjct: 224 QMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGS 283

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VLSAC+S   L+ G  +H    ++    D++  + L+D Y+K G    A ++F  L+ +D
Sbjct: 284 VLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHD 343

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            I  N++IT                               G+   G   +AL LF  M +
Sbjct: 344 HISWNSLIT-------------------------------GVVHFGLGEDALILFNQMRR 372

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             + +D+F L +++  C+       GE +       G+ S   +  +++  Y KCG
Sbjct: 373 SSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCG 428



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 141/318 (44%), Gaps = 66/318 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C+       G+ LH + +K G + S+ P+ N ++ MY +CG+   A L+F  M
Sbjct: 382 LPTILGVCSGPDYASTGELLHGYTIKSG-MGSSAPVGNAIITMYAKCGDTDKADLVFRLM 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P RN  SW AMI  F + G   K+   F++MP++N  +W                     
Sbjct: 441 PLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTW--------------------- 479

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     NSM+  YV+NGF+ E ++L+  + S+ V   Q D     T I ACADLA 
Sbjct: 480 ----------NSMLSTYVQNGFSEEGLKLYVSMRSNGV---QPDWITFTTSIRACADLAI 526

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           ++ G Q+ +H    GL  +  + +S+V +Y +CG          ++KE            
Sbjct: 527 VKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCG----------LIKE------------ 564

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                    A+  FD   D   + WN+M++ +  N    + +  F  M +     +  + 
Sbjct: 565 ---------AKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISY 615

Query: 308 ASVLSACSSLGFLEHGKQ 325
            SVLS CS +G +  GK 
Sbjct: 616 VSVLSGCSHMGLVAEGKH 633



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 6/149 (4%)

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNS 406
           YS  G+  DA ++F E    +    NTMI    S  R+ DA+ +F  MP   K  +SW +
Sbjct: 53  YSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTT 112

Query: 407 MIVGLSQNGSPIEALDLFCNM----NKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           MI G SQNG    + + F  M    N      D FS  SV+ AC ++    L  Q+ A V
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALV 172

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           + +G   +  I  S+V  Y KCG + + E
Sbjct: 173 SKLGFGMETCIQNSVVGMYVKCGDVDLAE 201


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 226/538 (42%), Gaps = 136/538 (25%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G+  H   L  G + +T  ++N LLQMY RCG    A  +FD              
Sbjct: 19  ALATGQAAHARMLVSGFMPTTF-VSNCLLQMYARCGGAAHARGVFD-------------- 63

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                            VMP ++  SWN +++ +A AG+   A +LF  MP  + ++WN+
Sbjct: 64  -----------------VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNA 106

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           ++  Y + G  R++V L  E+    V     D   LA ++ AC  L  L  G QIH+  +
Sbjct: 107 LLSGYCQRGMFRDSVGLSVEMARRGVAP---DRTTLAVLLKACGGLEDLALGVQIHAVAV 163

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             GL+ D   GS+LV++YGK                               C  + DA R
Sbjct: 164 KTGLEMDVRAGSALVDMYGK-------------------------------CRSLEDALR 192

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
            F    + +SV W + I+G + N + T  L LF +M+R G+       ASV  +C+++  
Sbjct: 193 FFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITC 252

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSK---------------------------- 351
           L   +Q+H HA K     D +V +A++D Y+K                            
Sbjct: 253 LSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVG 312

Query: 352 ---RGMPSDACKLF----------------------SELKVY-----------------D 369
               G+ ++A +LF                      +E+K Y                 D
Sbjct: 313 LVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVD 372

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             + N ++ +Y  C  + +A  +F+ M  +  +SWN++I  L QN    + +     M +
Sbjct: 373 VCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLR 432

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +  D F+  SV+ ACA + SLE G  V  +    GL  D  +S+++VD YCKCG I
Sbjct: 433 YGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMI 490



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 150/519 (28%), Positives = 228/519 (43%), Gaps = 109/519 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL++C     + +G Q+H   +K G L   +   + L+ MY +C +  DAL  F  M
Sbjct: 139 LAVLLKACGGLEDLALGVQIHAVAVKTG-LEMDVRAGSALVDMYGKCRSLEDALRFFHGM 197

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             RN  SW A I G ++     + L+LF  M +                           
Sbjct: 198 GERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN FS + ++       +AKA  L  AR  F  +P     A N+M+   VR G
Sbjct: 258 QLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF+ +       +  D   L+ V  ACA++     G Q+H   + +G D D  
Sbjct: 318 LGAEALQLFQFMTRS---GIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVC 374

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +++++LYGKC                      AL+  Y           VF       
Sbjct: 375 VRNAILDLYGKC---------------------KALVEAYL----------VFQEMEQRD 403

Query: 269 SVMWNSMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           SV WN++I+    N   EDT A L  ++M R G+  D  T  SVL AC+ L  LE+G  V
Sbjct: 404 SVSWNAIIAALEQNECYEDTIAYL--NEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVV 461

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG A K G+  D  V+S ++D Y K                               CG I
Sbjct: 462 HGKAIKSGLGLDAFVSSTVVDMYCK-------------------------------CGMI 490

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            +A+ +   +  + L+SWNS+I G S N    EA   F  M  + ++ D F+ A+V+  C
Sbjct: 491 TEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTC 550

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AN++++ELG+Q+  ++    +  D+ IS++LVD Y KCG
Sbjct: 551 ANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCG 589



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 140/303 (46%), Gaps = 31/303 (10%)

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           A A  +AL  G+  H+ +LV+G    + + + L+ +Y +CG    A  V ++M   D   
Sbjct: 13  AGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVS 72

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + +++ YA+ G    A  +F    D   V WN+++SGY       +++ L  +M R GV
Sbjct: 73  WNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGV 132

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D +TLA +L AC  L  L  G Q+H  A K G+  DV   SAL+D Y K         
Sbjct: 133 APDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK--------- 183

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 C  +EDA   F  M  ++ +SW + I G  QN      
Sbjct: 184 ----------------------CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRG 221

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L+LF  M +L L + + + ASV  +CA I+ L    Q+ A        +D+++ T++VD 
Sbjct: 222 LELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDV 281

Query: 481 YCK 483
           Y K
Sbjct: 282 YAK 284



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 2/182 (1%)

Query: 305 STLASVLSACSSLG--FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +T + +   C+  G   L  G+  H      G +    V++ LL  Y++ G  + A  +F
Sbjct: 3   ATFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVF 62

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   DT+  NTM+T Y+  G    A  +F  MP+  ++SWN+++ G  Q G   +++ 
Sbjct: 63  DVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVG 122

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L   M +  +  D+ +LA ++ AC  +  L LG Q+ A     GL+ D    ++LVD Y 
Sbjct: 123 LSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYG 182

Query: 483 KC 484
           KC
Sbjct: 183 KC 184


>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Glycine max]
          Length = 681

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 221/423 (52%), Gaps = 5/423 (1%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ N +I  +   G  +++ +LF+ MP  N FSWN +I  + KA  L  AR LF+    R
Sbjct: 19  FTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNLTQARALFDSASHR 78

Query: 133 NAIAWNSMIHCYV-RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           + +++NS++  YV  +G+  EA+ LF  + S   + +  D   L  ++   A L  L YG
Sbjct: 79  DLVSYNSLLSAYVGSDGYETEALDLFTRMQSAR-DTIGIDEITLTNMLNLAAKLRVLCYG 137

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYAN 250
           KQ+HS+++    D      SSL+++Y KCG F  A  +     E  D    +A+++    
Sbjct: 138 KQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVDLVSKNAMVAACCR 197

Query: 251 CGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            GKM+ A  VF +  +   +V WN++I+GY  N    ++L  F +M  NG+  +  TLAS
Sbjct: 198 EGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIENGIDFNEHTLAS 257

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL+ACS+L   + GK VH    K G   +  ++S ++D YSK G    A  +++++ +  
Sbjct: 258 VLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIRYAELVYAKIGIKS 317

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-N 428
              + ++I  YSS G + +A+ +F ++  ++ + W ++  G  ++        LF     
Sbjct: 318 PFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFKLFREFRT 377

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           K  L  D   + S++ ACA  + L LG+Q+ A +  +    D+ + +SLVD Y KCG + 
Sbjct: 378 KEALVPDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLSSLVDMYSKCGNVA 437

Query: 489 MDE 491
             E
Sbjct: 438 YAE 440



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 201/392 (51%), Gaps = 39/392 (9%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGFAKAGELKTARTLFNDMPR 131
           F+ +++I+ + K G  +++  LF    +  D  S N +++   + G++  A  +F   P 
Sbjct: 154 FALSSLIDMYSKCGCFQEACNLFGSCDEMVDLVSKNAMVAACCREGKMDMALNVFWKNPE 213

Query: 132 -RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN++I  Y +NG+  +++  F E+  + ++    +   LA+V+ AC+ L   + 
Sbjct: 214 LKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIENGID---FNEHTLASVLNACSALKCSKL 270

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK +H+ +L  G   +  + S +V+ Y KCG+   A  V   +     F +++LI+ Y++
Sbjct: 271 GKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIRYAELVYAKIGIKSPFAVASLIAAYSS 330

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLAS 309
            G M +A+R+FD   + +SV+W ++ SGY+ + +      LF + R +  ++ DA  + S
Sbjct: 331 QGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEAVFKLFREFRTKEALVPDAMIIVS 390

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L AC+    L  GKQ+H +  ++                                KV D
Sbjct: 391 ILGACAIQADLSLGKQIHAYILRM------------------------------RFKV-D 419

Query: 370 TILLNTMITVYSSCGRIEDAKHIFR--TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
             LL++++ +YS CG +  A+ +FR  T  ++  I +N +I G + +G   +A++LF  M
Sbjct: 420 KKLLSSLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAHHGFENKAIELFQEM 479

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF 459
               ++ D  +  +++SAC +   +ELGEQ F
Sbjct: 480 LNKSVKPDAVTFVALLSACRHRGLVELGEQFF 511



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 163/360 (45%), Gaps = 63/360 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+      +GK +H   LKKG  +S   I++ ++  Y +CGN   A L++   
Sbjct: 255 LASVLNACSALKCSKLGKSVHAWVLKKG-YSSNQFISSGVVDFYSKCGNIRYAELVY--- 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                           K+G              K+ F+   LI+ ++  G +  A+ LF+
Sbjct: 311 ---------------AKIG-------------IKSPFAVASLIAAYSSQGNMTEAQRLFD 342

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  RN++ W ++   YV++       +LF+E  +   E L  DA I+ +++GACA  A 
Sbjct: 343 SLLERNSVVWTALCSGYVKSQQCEAVFKLFREFRTK--EALVPDAMIIVSILGACAIQAD 400

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GKQIH++IL      D  L SSLV++Y KCG+   A ++  ++ + D          
Sbjct: 401 LSLGKQIHAYILRMRFKVDKKLLSSLVDMYSKCGNVAYAEKLFRLVTDSD---------- 450

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                                ++++N +I+GY  +  + +A+ LF +M    V  DA T 
Sbjct: 451 -------------------RDAILYNVIIAGYAHHGFENKAIELFQEMLNKSVKPDAVTF 491

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            ++LSAC   G +E G+Q         V+ ++   + ++D Y +      A +   ++ +
Sbjct: 492 VALLSACRHRGLVELGEQFFMSMEHYNVLPEIYHYACMVDMYGRANQLEKAVEFMRKIPI 551


>gi|255570455|ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534490|gb|EEF36190.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 446

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 209/412 (50%), Gaps = 71/412 (17%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  N ++  + KLG    +  LF+ M  ++ FSWN ++S +AKAG ++  R +F+DMP
Sbjct: 58  DSFLQNRLLHLYAKLGKISHARYLFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMP 117

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+++++N++I  + +NG A +AV  F  + +   E  +   +   +V+ AC  L  L  
Sbjct: 118 SRDSVSYNTVITGFAKNGRAGKAVEAFVRMQT---EGFKPTEYTHVSVLNACTQLLDLRK 174

Query: 191 GKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQV-------------------- 229
           GKQIH  IL  N L  +  + ++L ++Y KC + + A  +                    
Sbjct: 175 GKQIHGRILTGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYL 234

Query: 230 --------LNMMKE-------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
                   +N+  E       PD   +S ++  Y   G ++ A ++F  T +   V W +
Sbjct: 235 KNGQFEIGINLFHEMQGLGLKPDQVTVSNVLCAYFQSGYIDGATKLFSETREKDKVCWTT 294

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MI GY  N ++  AL+LF++M  N V  D+ T++SV+S+C+ L  L HG+ +HG A  +G
Sbjct: 295 MIVGYTQNGKEENALMLFNEMLEN-VRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMG 353

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           + DD++V+++L+D Y K                               CG   DA  +F 
Sbjct: 354 IDDDLLVSTSLVDMYCK-------------------------------CGVTSDAWVVFS 382

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            MP +S++SWN+M+ G ++NG  +EAL L+  M + ++R D  +   V+SAC
Sbjct: 383 MMPARSVVSWNAMLGGYARNGQDLEALALYEKMFQENIRPDNITFVGVLSAC 434



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 39/316 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +  GKQ+H   L    L   + I N L  MY +C     A  LFD +  +
Sbjct: 162 VLNACTQLLDLRKGKQIHGRILTGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRLANK 221

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           N  SWN+MI G++K G  E  + LF+ M     + +  + + ++  + ++G +  A  LF
Sbjct: 222 NMVSWNSMISGYLKNGQFEIGINLFHEMQGLGLKPDQVTVSNVLCAYFQSGYIDGATKLF 281

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           ++   ++ + W +MI  Y +NG    A+ LF E+    +E ++ D++ +++V+ +CA LA
Sbjct: 282 SETREKDKVCWTTMIVGYTQNGKEENALMLFNEM----LENVRPDSYTISSVVSSCAKLA 337

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           +L +G+ IH   L+ G+D D ++ +SLV++Y K                           
Sbjct: 338 SLIHGQVIHGIALLMGIDDDLLVSTSLVDMYCK--------------------------- 370

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
               CG  +DA  VF      S V WN+M+ GY  N +D EAL L+ KM +  +  D  T
Sbjct: 371 ----CGVTSDAWVVFSMMPARSVVSWNAMLGGYARNGQDLEALALYEKMFQENIRPDNIT 426

Query: 307 LASVLSACSSLGFLEH 322
              VLSAC+  G  + 
Sbjct: 427 FVGVLSACNHAGLFDE 442



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 155/316 (49%), Gaps = 37/316 (11%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           DS L + L++LY K G  + A  + + M   D F  +A++S YA  G + D R VFD   
Sbjct: 58  DSFLQNRLLHLYAKLGKISHARYLFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMP 117

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
              SV +N++I+G+  N    +A+  F +M+  G      T  SVL+AC+ L  L  GKQ
Sbjct: 118 SRDSVSYNTVITGFAKNGRAGKAVEAFVRMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQ 177

Query: 326 VHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT------ 378
           +HG       +  +V + +AL D Y+K      A  LF  L   + +  N+MI+      
Sbjct: 178 IHGRILTGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYLKNG 237

Query: 379 -----------------------------VYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
                                         Y   G I+ A  +F     K  + W +MIV
Sbjct: 238 QFEIGINLFHEMQGLGLKPDQVTVSNVLCAYFQSGYIDGATKLFSETREKDKVCWTTMIV 297

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G +QNG    AL LF  M + ++R D ++++SV+S+CA ++SL  G+ +     ++G+D 
Sbjct: 298 GYTQNGKEENALMLFNEMLE-NVRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMGIDD 356

Query: 470 DQIISTSLVDFYCKCG 485
           D ++STSLVD YCKCG
Sbjct: 357 DLLVSTSLVDMYCKCG 372



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC    S+  G+ +H   L  GI +  L ++  L+ MY +CG  +DA ++F  M
Sbjct: 326 ISSVVSSCAKLASLIHGQVIHGIALLMGI-DDDLLVSTSLVDMYCKCGVTSDAWVVFSMM 384

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           P R+  SWNAM+ G+ + G   ++L L+  M Q+N
Sbjct: 385 PARSVVSWNAMLGGYARNGQDLEALALYEKMFQEN 419


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 203/400 (50%), Gaps = 35/400 (8%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +P    F  N++I  +++LG    + + F+ +  K+  +W MLISG AK G L   + L 
Sbjct: 137 LPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLL 196

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           +  P R+ I+W S+I  Y R   AREAV  FK +   L   +  D   +  V+ ACA L 
Sbjct: 197 SQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM---LSHGIAPDEVTVIAVLSACAKLK 253

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEPDDFCLSALI 245
            LE G+ +H  +   G+     L  +L+++Y KCGDF  A QV + + + P     +A+I
Sbjct: 254 DLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAII 313

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G ++ AR +FD       + +NSM++GYI + +  EALLLF  MRR+ +  D  
Sbjct: 314 DGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNF 373

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T+ ++L+AC+SLG L+ G+ +H    +  V  D+ + +ALLD Y K              
Sbjct: 374 TVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMK-------------- 419

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                            CGR+++A  +F+ M  + + +W +MI GL+ NG    AL+ F 
Sbjct: 420 -----------------CGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFY 462

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
            M     + +  S  +V++AC++   L  G   F  + I+
Sbjct: 463 QMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRIL 502



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 3/284 (1%)

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +SL+++Y + G    A +  + +   D    + LISG A  G + D + +  +     
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W S+I+ Y   N   EA+  F  M  +G+  D  T+ +VLSAC+ L  LE G+ +H 
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHL 263

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIE 387
              + G+     +  AL+D Y+K G    A ++F  L +       N +I  Y   G ++
Sbjct: 264 LVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVD 323

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  M  + +I++NSM+ G   +G   EAL LF +M + DLR+D F++ ++++ACA
Sbjct: 324 VARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACA 383

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++ +L+ G  + A +    +++D  + T+L+D Y KCG  ++DE
Sbjct: 384 SLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCG--RVDE 425



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 8/235 (3%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A  +FDR   ++ +   ++ +   + ++     LLF +MRR GV  D  T    L  CSS
Sbjct: 56  ALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTF-HFLFKCSS 114

Query: 317 LGFLEHG----KQVHGHACKVGVIDDV--IVASALLDTYSKRGMPSDACKLFSELKVYDT 370
                H       +H  AC   ++      V+++L+  Y + G+ +DA + F E+ V D 
Sbjct: 115 SSSRPHSLLLCTMLHA-ACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDA 173

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +    +I+  +  G + D + +    P + +ISW S+I   S+     EA+  F  M   
Sbjct: 174 VAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSH 233

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  D+ ++ +V+SACA +  LELG  +   V   G+ + + +  +L+D Y KCG
Sbjct: 234 GIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCG 288


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 241/518 (46%), Gaps = 108/518 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C++   +   +Q+     K G+         +L+ ++ R G+  +A  +F+ + 
Sbjct: 41  ALLLERCSSLKEL---RQILPLVFKNGLYQEHF-FQTKLVSLFCRYGSVDEAARVFEPID 96

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISG---------- 112
            +    ++ M++GF K+   +K+LQ F      +V P   +F++ + + G          
Sbjct: 97  SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156

Query: 113 -----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                  +AK  ++  AR +F+ MP R+ ++WN+++  Y +NG 
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           AR A+ + K +     E L+     + +V+ A + L  +  GK+IH + + +G D     
Sbjct: 217 ARMALEMVKSMCE---ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD----- 268

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
             SLVN+                         +AL+  YA CG +  AR++FD   + + 
Sbjct: 269 --SLVNIS------------------------TALVDMYAKCGSLETARQLFDGMLERNV 302

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNSMI  Y+ N    EA+L+F KM   GV     ++   L AC+ LG LE G+ +H  
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           + ++G+  +V V                               +N++I++Y  C  ++ A
Sbjct: 363 SVELGLDRNVSV-------------------------------VNSLISMYCKCKEVDTA 391

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F  + +++L+SWN+MI+G +QNG PI+AL+ F  M    ++ D F+  SVI+A A +
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           S     + +   V    LD +  ++T+LVD Y KCG I
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/488 (28%), Positives = 215/488 (44%), Gaps = 105/488 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     + VGK++H   +K G  +  L     L  MY +C    +A  +FD MP R
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------------- 102
           +  SWN ++ G+ + G    +L++   M ++N                            
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259

Query: 103 --------DFSWNM---LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   D   N+   L+  +AK G L+TAR LF+ M  RN ++WNSMI  YV+N   +
Sbjct: 260 GYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPK 319

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ +F+++  + V+    D  ++   + ACADL  LE G+ IH   +  GLD +     
Sbjct: 320 EAMLIFQKMLDEGVK--PTDVSVMGA-LHACADLGDLERGRFIHKLSVELGLDRNV---- 372

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           S+VN                           +LIS Y  C +++ A  +F +    + V 
Sbjct: 373 SVVN---------------------------SLISMYCKCKEVDTAASMFGKLQSRTLVS 405

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI G+  N    +AL  F +MR   V  D  T  SV++A + L    H K +HG   
Sbjct: 406 WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  +V V +AL+D Y+K                               CG I  A+ 
Sbjct: 466 RSCLDKNVFVTTALVDMYAK-------------------------------CGAIMIARL 494

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           IF  M  + + +WN+MI G   +G    AL+LF  M K  ++ +  +  SVISAC++   
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554

Query: 452 LELGEQVF 459
           +E G + F
Sbjct: 555 VEAGLKCF 562


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 241/516 (46%), Gaps = 109/516 (21%)

Query: 11   LLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
            +L++C  +   + VG+++H   +K G+ +  + I   LL MY + GN +DA  +FD MP 
Sbjct: 664  VLRACAGSREHLSVGRKVHGRIIKSGVDDDAV-IETSLLCMYGQTGNLSDAEKVFDGMPV 722

Query: 70   RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--------------------------- 102
            R+  +W+ ++   ++     K+L++F  M                               
Sbjct: 723  RDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSV 782

Query: 103  ---------DFSW---NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                     DF     N L++ ++K G+L ++  +F  + ++NA++W +MI  Y R  F+
Sbjct: 783  HGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFS 842

Query: 151  REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
             +A+R F E+   L   ++ +   L +++ +C     +  GK +H   +   LD      
Sbjct: 843  EKALRSFSEM---LKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELD------ 893

Query: 211  SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTDTSS 269
                                     P+   LS AL+  YA CG++ D   +     D + 
Sbjct: 894  -------------------------PNYESLSPALVELYAECGRLGDCETILHVVGDRNI 928

Query: 270  VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            V+WNS IS Y       EAL LF +M    +  D+ TLAS++SAC + G +  GKQ+HGH
Sbjct: 929  VLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGH 988

Query: 330  ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
              +  V D+  V ++++D YSK G  + AC +F ++K                       
Sbjct: 989  VIRTDVSDE-FVQNSVIDMYSKSGFVNLACTVFDQIK----------------------- 1024

Query: 390  KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                    ++S+++WNSM+ G SQNG+ +EA++LF  M    L ++K +  +VI AC++I
Sbjct: 1025 --------HRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSI 1076

Query: 450  SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             SLE G  V  ++ + G+  D    T+L+D Y KCG
Sbjct: 1077 GSLEKGRWVHHKLIVCGI-KDLFTDTALIDMYAKCG 1111



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 221/519 (42%), Gaps = 110/519 (21%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +++ C     + + + +H    +K + +    + N LL MY +CG+   +  +F+++ ++
Sbjct: 766  VVEGCAELGCLRIARSVHGQITRK-MFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKK 824

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------------------- 98
            N  SW AMI  + +    EK+L+ F+ M                                
Sbjct: 825  NAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVH 884

Query: 99   ---------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                     P     S   L+  +A+ G L    T+ + +  RN + WNS I  Y   G 
Sbjct: 885  GFAIRRELDPNYESLS-PALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGM 943

Query: 150  AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
              EA+ LF+++   +  R++ D+F LA++I AC +   +  GKQIH H++   +      
Sbjct: 944  VIEALCLFRQM---VTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVS----- 995

Query: 210  GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                                       D+F  +++I  Y+  G +N A  VFD+    S 
Sbjct: 996  ---------------------------DEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSI 1028

Query: 270  VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            V WNSM+ G+  N    EA+ LF  M  + +  +  T  +V+ ACSS+G LE G+ VH H
Sbjct: 1029 VTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVH-H 1087

Query: 330  ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
               V  I D+   +AL+D Y+K                               CG +  A
Sbjct: 1088 KLIVCGIKDLFTDTALIDMYAK-------------------------------CGDLNTA 1116

Query: 390  KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            + +FR M N+S++SW+SMI     +G    A+  F  M +   + ++    +V+SAC + 
Sbjct: 1117 ETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHS 1176

Query: 450  SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             S+E G+  F  + + G+  +       +D   + G +K
Sbjct: 1177 GSVEEGKYYFNLMKLFGVSPNSEHFACFIDLLSRSGDLK 1215



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 164/396 (41%), Gaps = 73/396 (18%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L  +L SC  +  I  GK +H   +++ +  +   ++  L+++Y  CG   D   +   +
Sbjct: 864  LYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCETILHVV 923

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ--------------------- 100
              RN   WN+ I  +   G   ++L LF  M      P                      
Sbjct: 924  GDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGK 983

Query: 101  -----------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                        ++F  N +I  ++K+G +  A T+F+ +  R+ + WNSM+  + +NG 
Sbjct: 984  QIHGHVIRTDVSDEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGN 1043

Query: 150  AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            + EA+ LF  +       L+ +      VI AC+ + +LE G+ +H  ++V G+  D   
Sbjct: 1044 SLEAINLFDYMYHSC---LEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIK-DLFT 1099

Query: 210  GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
             ++L+++Y KCGD N+A  V   M                               ++ S 
Sbjct: 1100 DTALIDMYAKCGDLNTAETVFRAM-------------------------------SNRSI 1128

Query: 270  VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            V W+SMI+ Y  +     A+  F++M  +G   +     +VLSAC   G +E GK     
Sbjct: 1129 VSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNL 1188

Query: 330  ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
                GV  +    +  +D  S+ G   +A +   E+
Sbjct: 1189 MKLFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEM 1224



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 36/252 (14%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D   ++ LI  YA  G  + +R VF+      S M+  +I   +  +    A+ L+H++ 
Sbjct: 591 DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 650

Query: 297 RNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
                       SVL AC+  G  EH   G++VHG   K GV DD ++ ++LL       
Sbjct: 651 SEKTQISKFVFPSVLRACA--GSREHLSVGRKVHGRIIKSGVDDDAVIETSLL------- 701

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                    +Y   G + DA+ +F  MP + L++W++++    +
Sbjct: 702 ------------------------CMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLE 737

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           N   ++AL +F  M    +  D  ++ SV+  CA +  L +   V  ++T    D D+ +
Sbjct: 738 NCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETL 797

Query: 474 STSLVDFYCKCG 485
             SL+  Y KCG
Sbjct: 798 CNSLLTMYSKCG 809


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 241/520 (46%), Gaps = 110/520 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C +   +H   Q+    +K G  N  L    +L+ ++ +  + T+A  +F+ + 
Sbjct: 48  AILLELCTSLKELH---QILPLIIKNGFYNEHL-FQTKLISLFCKFNSITEAARVFEPVE 103

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISG---------- 112
            +    ++ M++G+ K      +++ +       VMP   DF++ + +SG          
Sbjct: 104 HKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGRE 163

Query: 113 -----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                  +AK  +++ A  +F  MP+R+ ++WN+++  Y +NGF
Sbjct: 164 IHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGF 223

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           AR AV++  ++        + D+  L +V+ A ADL AL  G+ IH +    G ++    
Sbjct: 224 ARRAVQVVLQMQE---AGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEY---- 276

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
              +VN+                         +A++  Y  CG +  AR VF   +  + 
Sbjct: 277 ---MVNV------------------------ATAMLDTYFKCGSVRSARLVFKGMSSRNV 309

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN+MI GY  N E  EA   F KM   GV     ++   L AC++LG LE G+ VH  
Sbjct: 310 VSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVH-- 367

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIED 388
                                         +L  E K+ +D  ++N++I++YS C R++ 
Sbjct: 368 ------------------------------RLLDEKKIGFDVSVMNSLISMYSKCKRVDI 397

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F  + +K++++WN+MI+G +QNG   EAL+LFC M   D++ D F+L SVI+A A+
Sbjct: 398 AASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALAD 457

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +S     + +        +D +  + T+L+D + KCG I+
Sbjct: 458 LSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQ 497



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 210/473 (44%), Gaps = 81/473 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ    +  +  G+++H   +  G   S L     ++ +Y +C    DA  +F+ MP+R
Sbjct: 148 LLQLSGENLDLRRGREIHGMVITNG-FQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQR 206

Query: 71  NCFSWNAMIEGF----------------MKLGHKEKSLQLFNVMPQKNDFSWNML---IS 111
           +  SWN ++ G+                 + G K  S+ L +V+P   D     +   I 
Sbjct: 207 DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIH 266

Query: 112 GFA--------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           G+A                    K G +++AR +F  M  RN ++WN+MI  Y +NG + 
Sbjct: 267 GYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE 326

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA   F ++  + VE        +   + ACA+L  LE G+ +H  +    + FD  +  
Sbjct: 327 EAFATFLKMLDEGVEPTNVS---MMGALHACANLGDLERGRYVHRLLDEKKIGFDVSV-- 381

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                        +++LIS Y+ C +++ A  VF      + V 
Sbjct: 382 -----------------------------MNSLISMYSKCKRVDIAASVFGNLKHKTVVT 412

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI GY  N    EAL LF +M+ + +  D+ TL SV++A + L      K +HG A 
Sbjct: 413 WNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAI 472

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  +V V +AL+DT++K G    A KLF  ++    I  N MI  Y + G   +A  
Sbjct: 473 RTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALD 532

Query: 392 IFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNK---LDLRMDKF 437
           +F  M N S+    I++ S+I   S +G   E +  F +M +   L+  MD +
Sbjct: 533 LFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHY 585


>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
          Length = 876

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 245/506 (48%), Gaps = 33/506 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNST---LPIANRLLQMYMRCGNPTDALLLF 64
           + R+LQ+C     + +G  +H   +++G +      +P+ N +L MY++CG    A   F
Sbjct: 168 ITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGRARAAF 227

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELK 120
           D M +R+  +WN+MI G  +    E++ +L + M ++       +WN L+S +A++GEL 
Sbjct: 228 DMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYARSGELD 287

Query: 121 TARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            A  +   M       + + W S++  +V      EA+  F  +    VE    +   +A
Sbjct: 288 VAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEP---NGMTIA 344

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           + I ACA L  L  G ++H H +  G   + + G+SLV++Y KCG+  +A +V + + E 
Sbjct: 345 SAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEIPEK 404

Query: 237 DDFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           D F  +++++GYA  G    A  +F          + + WN MISGYI N +D  A  LF
Sbjct: 405 DIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGDDERAFELF 464

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK- 351
             M   GV  D ++  ++++     G  +   ++      + V  D I   +++  ++  
Sbjct: 465 QMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITILSIIPAFANL 524

Query: 352 ----RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
               +     AC   + L++ D  + N +I  YS  G +  A  +F    ++++ISWN +
Sbjct: 525 AGFWKVREIHACIYHNNLEM-DGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCI 583

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT---- 463
           I+    +GSP EALD FC M +  +R D  +L +VI A      +   +++F  +T    
Sbjct: 584 ILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIFHNMTHDYN 643

Query: 464 -IIGLDSDQIISTSLVDFYCKCGFIK 488
            I  LD      T++VD   + G ++
Sbjct: 644 IIPDLDH----YTAIVDLLGRSGSLQ 665



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 203/433 (46%), Gaps = 51/433 (11%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+  + AG L  AR +F  M  R+ +AW++MI  Y   G   E V L   +   + E +
Sbjct: 105 LITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAM---VREGV 161

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGL----DFDSVLGSSLVNLYGKCGDFN 224
             D F++  ++ ACA    LE G  +HS  +  G       D  +G+S++ +Y KCG+  
Sbjct: 162 IPDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELG 221

Query: 225 SANQVLNMM-----------------------------------KEPDDFCLSALISGYA 249
            A    +MM                                    EP     + L+S YA
Sbjct: 222 RARAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYA 281

Query: 250 NCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
             G+++ A  + ++  ++      V W S++SG++  +   EAL  F +MR  GV  +  
Sbjct: 282 RSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEPNGM 341

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T+AS +SAC+SL  L  G ++H HA KVG +++V+  ++L+D Y+K G    A ++F E+
Sbjct: 342 TIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEI 401

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEAL 421
              D    N+M+  Y+  G    A  +F  M +    +++I+WN MI G  +NG    A 
Sbjct: 402 PEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGDDERAF 461

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M    ++ D  S  ++I+   +    +   ++F ++  + +  D I   S++  +
Sbjct: 462 ELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITILSIIPAF 521

Query: 482 CK-CGFIKMDEYY 493
               GF K+ E +
Sbjct: 522 ANLAGFWKVREIH 534


>gi|255556101|ref|XP_002519085.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541748|gb|EEF43296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1157

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 223/417 (53%), Gaps = 5/417 (1%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ N +I  + K G   ++  LF+ MP+KN FSWN +IS   +   L  A+ +F+    R
Sbjct: 498 FTSNKLIHLYSKHGLAREARNLFDEMPEKNVFSWNAIISAHIRTHNLTQAKAIFDSASVR 557

Query: 133 NAIAWNSMIHCYVR-NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           + + +N M+  YVR +G    A+ LFKE+  +   ++  D F L T++   A L+ L +G
Sbjct: 558 DLVTYNLMLSGYVRVDGCESYALDLFKEMPRNR-SKVGIDEFSLTTMVKLFAKLSMLCHG 616

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYAN 250
           +Q+HS+++    D      SSL+++Y KCG F +A +V    +   D    +A+++    
Sbjct: 617 RQVHSYMVKTANDKSGFAVSSLIDMYSKCGCFKAALEVFKGCERVVDLVSKNAMVAACCR 676

Query: 251 CGKMNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            G+M+ A ++F R  +   +V WN++ISGY+ N    E+   F +M  NGV+ +  T AS
Sbjct: 677 EGEMDLALKLFWRENELNDTVSWNTLISGYVQNGYAVESFKSFVRMMDNGVMWNEHTFAS 736

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +LSACS L  L+ GK++H    K G+  +  + S ++D Y K G    A  ++   ++  
Sbjct: 737 LLSACSGLRNLKLGKEIHACVLKNGMDSNPYIESGIIDVYCKCGNVKYAESIYLGSRIGS 796

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-N 428
               ++MI  YS  G + +A+ +F ++  K+ I W ++  G  +        +LF    +
Sbjct: 797 PFSTSSMIVGYSLQGNMAEARRLFDSLEEKNAIVWTALFTGYVKLQHCEAIFELFSEFRS 856

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           K  +  D   L SV+ ACA  ++L  G+Q+   V  +G+  D+ +ST++VD Y K G
Sbjct: 857 KEAMVPDSLILISVLGACALEAALSPGKQIHGYVFRMGITMDKKMSTAMVDMYSKSG 913



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 212/447 (47%), Gaps = 79/447 (17%)

Query: 45  NRLLQMYMRC-GNPTDALLLFDEMPRRNC------FSWNAMIEGFMKLGHKEKSLQLFNV 97
           N +L  Y+R  G  + AL LF EMPR         FS   M++ F KL       Q+ + 
Sbjct: 563 NLMLSGYVRVDGCESYALDLFKEMPRNRSKVGIDEFSLTTMVKLFAKLSMLCHGRQVHSY 622

Query: 98  MPQ----KNDFSWNMLISGFAKAGELKTARTLFN------DMPRRNA------------- 134
           M +    K+ F+ + LI  ++K G  K A  +F       D+  +NA             
Sbjct: 623 MVKTANDKSGFAVSSLIDMYSKCGCFKAALEVFKGCERVVDLVSKNAMVAACCREGEMDL 682

Query: 135 --------------IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
                         ++WN++I  YV+NG+A E+ + F  +  + V     +    A+++ 
Sbjct: 683 ALKLFWRENELNDTVSWNTLISGYVQNGYAVESFKSFVRMMDNGV---MWNEHTFASLLS 739

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           AC+ L  L+ GK+IH+ +L NG+D +  + S ++++Y KCG+   A  +    +    F 
Sbjct: 740 ACSGLRNLKLGKEIHACVLKNGMDSNPYIESGIIDVYCKCGNVKYAESIYLGSRIGSPFS 799

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR-RNG 299
            S++I GY+  G M +ARR+FD   + ++++W ++ +GY+          LF + R +  
Sbjct: 800 TSSMIVGYSLQGNMAEARRLFDSLEEKNAIVWTALFTGYVKLQHCEAIFELFSEFRSKEA 859

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           ++ D+  L SVL AC+    L  GKQ+HG+  ++G+  D  +++A++D YSK G  + A 
Sbjct: 860 MVPDSLILISVLGACALEAALSPGKQIHGYVFRMGITMDKKMSTAMVDMYSKSGSTAYAE 919

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           K+F  +   D+IL N M+                                G + NG  IE
Sbjct: 920 KVFQNVNERDSILYNVMMA-------------------------------GYAHNGHEIE 948

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISAC 446
           A+ LF  M +  +R +  +  +++SAC
Sbjct: 949 AIQLFQEMLEKGVRPNVVTFVALLSAC 975



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 5/284 (1%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L++LY K G    A  + + M E + F  +A+IS +     +  A+ +FD  +    V +
Sbjct: 503 LIHLYSKHGLAREARNLFDEMPEKNVFSWNAIISAHIRTHNLTQAKAIFDSASVRDLVTY 562

Query: 273 NSMISGYIS-NNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           N M+SGY+  +  ++ AL LF +M RN   V  D  +L +++   + L  L HG+QVH +
Sbjct: 563 NLMLSGYVRVDGCESYALDLFKEMPRNRSKVGIDEFSLTTMVKLFAKLSMLCHGRQVHSY 622

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIED 388
             K          S+L+D YSK G    A ++F    +V D +  N M+      G ++ 
Sbjct: 623 MVKTANDKSGFAVSSLIDMYSKCGCFKAALEVFKGCERVVDLVSKNAMVAACCREGEMDL 682

Query: 389 AKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           A  +F R       +SWN++I G  QNG  +E+   F  M    +  ++ + AS++SAC+
Sbjct: 683 ALKLFWRENELNDTVSWNTLISGYVQNGYAVESFKSFVRMMDNGVMWNEHTFASLLSACS 742

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            + +L+LG+++ A V   G+DS+  I + ++D YCKCG +K  E
Sbjct: 743 GLRNLKLGKEIHACVLKNGMDSNPYIESGIIDVYCKCGNVKYAE 786



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 141/313 (45%), Gaps = 65/313 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL +C+   ++ +GK++H   LK G ++S   I + ++ +Y +CGN   A  ++   
Sbjct: 734 FASLLSACSGLRNLKLGKEIHACVLKNG-MDSNPYIESGIIDVYCKCGNVKYAESIY--- 789

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                            LG +  S            FS + +I G++  G +  AR LF+
Sbjct: 790 -----------------LGSRIGS-----------PFSTSSMIVGYSLQGNMAEARRLFD 821

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  +NAI W ++   YV+         LF E  S   E +  D+ IL +V+GACA  AA
Sbjct: 822 SLEEKNAIVWTALFTGYVKLQHCEAIFELFSEFRSK--EAMVPDSLILISVLGACALEAA 879

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GKQIH ++   G+  D  + +++V++Y K G                        + 
Sbjct: 880 LSPGKQIHGYVFRMGITMDKKMSTAMVDMYSKSGS-----------------------TA 916

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA         +VF    +  S+++N M++GY  N  + EA+ LF +M   GV  +  T 
Sbjct: 917 YA--------EKVFQNVNERDSILYNVMMAGYAHNGHEIEAIQLFQEMLEKGVRPNVVTF 968

Query: 308 ASVLSACSSLGFL 320
            ++LSAC   G +
Sbjct: 969 VALLSACRHCGLV 981



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G I  V  ++ L+  YSK G+  +A  LF E+   +    N +I+ +     +  AK I
Sbjct: 491 LGCILPVFTSNKLIHLYSKHGLAREARNLFDEMPEKNVFSWNAIISAHIRTHNLTQAKAI 550

Query: 393 FRTMPNKSLISWNSMIVGLSQ-NGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANI 449
           F +   + L+++N M+ G  + +G    ALDLF  M  N+  + +D+FSL +++   A +
Sbjct: 551 FDSASVRDLVTYNLMLSGYVRVDGCESYALDLFKEMPRNRSKVGIDEFSLTTMVKLFAKL 610

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           S L  G QV + +     D      +SL+D Y KCG  K
Sbjct: 611 SMLCHGRQVHSYMVKTANDKSGFAVSSLIDMYSKCGCFK 649


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 224/433 (51%), Gaps = 44/433 (10%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR----RNCFSWNAMIEGF-----MKLG 86
           + + +L + N ++++Y + G     LLLF ++       + F++  +++       ++ G
Sbjct: 157 VQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQG 216

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
            K +   +   M   N + +N LI  + +   ++ A+ LF++M  R++++WN MI  YVR
Sbjct: 217 EKVRGFIVKTGMDLDN-YVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 275

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
                +A+  F+E+  +  E+   D   + + + AC  L  LE G +IH+++    L F 
Sbjct: 276 CRRFEDAINTFREMQQEGNEKP--DEATVVSTLSACTALKNLELGDEIHNYVR-KELGFT 332

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           + + ++L+++Y KCG  N A  + + M   +  C +++ISGY NCG + +AR +FD++  
Sbjct: 333 TRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPV 392

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V+W +MI+GY+  +   +A+ LF +M+   +  D  T+ ++L+ C+ LG LE GK +
Sbjct: 393 RDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWI 452

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG+  +  +  DV+V +AL++ YSK                               CG +
Sbjct: 453 HGYLDENRITMDVVVGTALIEMYSK-------------------------------CGCV 481

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + +  IF  + +K   SW S+I GL+ NG   EAL LF  M ++  + D  +   V+SAC
Sbjct: 482 DKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSAC 541

Query: 447 ANISSLELGEQVF 459
           ++   +E G + F
Sbjct: 542 SHGGLVEEGRRFF 554



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 205/422 (48%), Gaps = 49/422 (11%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA--GELKTARTLFN 127
           RNC S + +         K+   Q+F +  + +  + N L++  A +  G L+ A  +FN
Sbjct: 105 RNCKSMDQL---------KQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFN 155

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +   +   +N M+  Y + G  R+ + LF++L  D    L  D F    V+ A   L  
Sbjct: 156 YVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLRED---GLWPDGFTYPFVLKAIGCLRD 212

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           +  G+++   I+  G+D D+ + +SL+++Y +  +  +A ++ + M   D    + +ISG
Sbjct: 213 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 272

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDAST 306
           Y  C +  D                               A+  F +M++ G    D +T
Sbjct: 273 YVRCRRFED-------------------------------AINTFREMQQEGNEKPDEAT 301

Query: 307 LASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           + S LSAC++L  LE G ++H +  K +G      + +ALLD Y+K G  + A  +F E+
Sbjct: 302 VVSTLSACTALKNLELGDEIHNYVRKELGFT--TRIDNALLDMYAKCGCLNIARNIFDEM 359

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
            + + I   +MI+ Y +CG + +A+ +F   P + ++ W +MI G  Q     +A+ LF 
Sbjct: 360 SMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFR 419

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M    ++ DKF++ ++++ CA + +LE G+ +   +    +  D ++ T+L++ Y KCG
Sbjct: 420 EMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCG 479

Query: 486 FI 487
            +
Sbjct: 480 CV 481



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 190/444 (42%), Gaps = 114/444 (25%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +G ++H +  K+  L  T  I N LL MY +CG    A  +FDEM  +N
Sbjct: 306 LSACTALKNLELGDEIHNYVRKE--LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKN 363

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
              W +MI G++  G   ++  LF+  P ++   W  +I+G                   
Sbjct: 364 VICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMING------------------- 404

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
                       YV+     +AV LF+E+    +++++ D F + T++  CA L ALE G
Sbjct: 405 ------------YVQFHHFDDAVALFREMQ---IQKIKPDKFTVVTLLTGCAQLGALEQG 449

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K IH ++  N +  D V+G++L+ +Y KCG  + + ++   +++ D    +++I G A  
Sbjct: 450 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 509

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           GK                                +EAL LF +M R G   D  T   VL
Sbjct: 510 GKT-------------------------------SEALRLFSEMERVGAKPDDITFIGVL 538

Query: 312 SACSSLGFLEHG-------KQVHGHACKV---GVIDDVIVASALLDTYSK--RGMPSDAC 359
           SACS  G +E G       K+VH    KV   G + D++  + LLD   +  + +P + C
Sbjct: 539 SACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENC 598

Query: 360 K--------LFSELKVY-------------------DTILLNTMITVYSSCGRIEDAKHI 392
           +        L S  +++                   D+ +   +  +Y+S  R EDAK +
Sbjct: 599 EIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKV 658

Query: 393 FR--------TMPNKSLISWNSMI 408
            R         MP  SLI  + ++
Sbjct: 659 RRKMKELGVKKMPGCSLIEVDGIV 682



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 14/234 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    ++  GK +H  +L +  +   + +   L++MY +CG    +L +F E+  +
Sbjct: 436 LLTGCAQLGALEQGKWIH-GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDK 494

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW ++I G    G   ++L+LF+ M     + +D ++  ++S  +  G ++  R  F
Sbjct: 495 DTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFF 554

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M + + I      +  +I    R G   EA  L +E+    +E  +    +   ++ A
Sbjct: 555 NSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIP---IENCEIVVPLYGALLSA 611

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     ++ G+++ +  L N    DS + + L N+Y     +  A +V   MKE
Sbjct: 612 CRIHNNVDMGERL-AKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKE 664


>gi|413941673|gb|AFW74322.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
          Length = 1028

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 245/506 (48%), Gaps = 33/506 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNS---TLPIANRLLQMYMRCGNPTDALLLF 64
           + R+LQ+C     + +G  +H   +++G +      +P+ N +L MY++CG    A   F
Sbjct: 168 ITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELGRARAAF 227

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELK 120
           D M +R+  +WN+MI G  +    E++ +L + M ++       +WN L+S +A++GEL 
Sbjct: 228 DMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYARSGELD 287

Query: 121 TARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            A  +   M       + + W S++  +V      EA+  F  +    VE    +   +A
Sbjct: 288 VAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEP---NGMTIA 344

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           + I ACA L  L  G ++H H +  G   + + G+SLV++Y KCG+  +A +V + + E 
Sbjct: 345 SAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEIPEK 404

Query: 237 DDFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           D F  +++++GYA  G    A  +F          + + WN MISGYI N +D  A  LF
Sbjct: 405 DIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGDDERAFELF 464

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK- 351
             M   GV  D ++  ++++     G  +   ++      + V  D I   +++  ++  
Sbjct: 465 QMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITILSIIPAFANL 524

Query: 352 ----RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
               +     AC   + L++ D  + N +I  YS  G +  A  +F    ++++ISWN +
Sbjct: 525 AGFWKVREIHACIYHNNLEM-DGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWNCI 583

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT---- 463
           I+    +GSP EALD FC M +  +R D  +L +VI A      +   +++F  +T    
Sbjct: 584 ILAHLLHGSPSEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKRIFHNMTHDYN 643

Query: 464 -IIGLDSDQIISTSLVDFYCKCGFIK 488
            I  LD      T++VD   + G ++
Sbjct: 644 IIPDLDH----YTAIVDLLGRSGSLQ 665



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 203/433 (46%), Gaps = 51/433 (11%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+  + AG L  AR +F  M  R+ +AW++MI  Y   G   E V L   +   + E +
Sbjct: 105 LITVHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYEEVVALAVAM---VREGV 161

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGL----DFDSVLGSSLVNLYGKCGDFN 224
             D F++  ++ ACA    LE G  +HS  +  G       D  +G+S++ +Y KCG+  
Sbjct: 162 IPDRFLITRILQACAYTEDLELGTAMHSLAIRRGFMAEGARDVPVGNSVLAMYVKCGELG 221

Query: 225 SANQVLNMM-----------------------------------KEPDDFCLSALISGYA 249
            A    +MM                                    EP     + L+S YA
Sbjct: 222 RARAAFDMMGQRDLCTWNSMIFGCCRSNEWEEARRLLDDMRRQGTEPGLVTWNTLVSSYA 281

Query: 250 NCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
             G+++ A  + ++  ++      V W S++SG++  +   EAL  F +MR  GV  +  
Sbjct: 282 RSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHGDRGGEALWCFARMRLAGVEPNGM 341

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T+AS +SAC+SL  L  G ++H HA KVG +++V+  ++L+D Y+K G    A ++F E+
Sbjct: 342 TIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIIAAKRVFDEI 401

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEAL 421
              D    N+M+  Y+  G    A  +F  M +    +++I+WN MI G  +NG    A 
Sbjct: 402 PEKDIFSWNSMVAGYAQAGYCGKAYELFCEMESLGVRRNVITWNIMISGYIRNGDDERAF 461

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M    ++ D  S  ++I+   +    +   ++F ++  + +  D I   S++  +
Sbjct: 462 ELFQMMESCGVKRDTASWNALIAGSVHNGHSDRALRIFWQMQSLLVRPDFITILSIIPAF 521

Query: 482 CK-CGFIKMDEYY 493
               GF K+ E +
Sbjct: 522 ANLAGFWKVREIH 534


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 215/433 (49%), Gaps = 69/433 (15%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           ++ F  N ++  + K G    +  +F+ M +++ +SWN L+S +AK G ++    +F+ M
Sbjct: 56  KDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQM 115

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           P R+++++N++I C+  NG + +A+++   +  D  +  Q   +     + AC+ L  L 
Sbjct: 116 PYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQ---YSHVNALQACSQLLDLR 172

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA----------------------- 226
           +GKQIH  I+V  L  ++ + +++ ++Y KCGD + A                       
Sbjct: 173 HGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYV 232

Query: 227 -----NQVLNMMKE-------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
                N+ +++  E       PD   +S +++ Y  CG+++DAR +F +      + W +
Sbjct: 233 KMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTT 292

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MI GY  N  + +A +LF  M R  V  D+ T++S++S+C+ L  L HG+ VHG    +G
Sbjct: 293 MIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMG 352

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           + + ++V+SAL+D Y K G+  DA  +F  + + + I  N MI                 
Sbjct: 353 IDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMI----------------- 395

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
                         +G +QNG  +EAL L+  M + + + D  +   V+SAC N   ++ 
Sbjct: 396 --------------LGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKE 441

Query: 455 GEQVFARVTIIGL 467
           G++ F  ++  G+
Sbjct: 442 GQKYFDSISEHGI 454



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 181/340 (53%), Gaps = 36/340 (10%)

Query: 182 CADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           CA        K++ SH+ +N     DS + + L++LY K G  + A  V + M + D + 
Sbjct: 32  CARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYS 91

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + L+S YA  G + +   VFD+     SV +N++I+ + SN    +AL +  +M+ +G 
Sbjct: 92  WNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGF 151

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK--------- 351
                +  + L ACS L  L HGKQ+HG      + ++  V +A+ D Y+K         
Sbjct: 152 QPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARL 211

Query: 352 ----------------------RGMPSDACKLFSELKVY----DTILLNTMITVYSSCGR 385
                                  G P++   LF+E+++     D + ++ ++  Y  CGR
Sbjct: 212 LFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGR 271

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++DA+++F  +P K  I W +MIVG +QNG   +A  LF +M + +++ D ++++S++S+
Sbjct: 272 VDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSS 331

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           CA ++SL  G+ V  +V ++G+D+  ++S++LVD YCKCG
Sbjct: 332 CAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCG 371



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 188/392 (47%), Gaps = 70/392 (17%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           LQ+C+    +  GKQ+H   +   +  +T  + N +  MY +CG+   A LLFD M  +N
Sbjct: 162 LQACSQLLDLRHGKQIHGRIVVADLGENTF-VRNAMTDMYAKCGDIDKARLLFDGMIDKN 220

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI G++K+G+  + + LFN M     + +  + + +++ + + G +  AR LF 
Sbjct: 221 VVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFI 280

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +P+++ I W +MI  Y +NG   +A  LF ++   L   ++ D++ +++++ +CA LA+
Sbjct: 281 KLPKKDEICWTTMIVGYAQNGREEDAWMLFGDM---LRRNVKPDSYTISSMVSSCAKLAS 337

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L +G+ +H  ++V G+D   ++ S+LV++Y K                            
Sbjct: 338 LYHGQVVHGKVVVMGIDNSMLVSSALVDMYCK---------------------------- 369

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              CG   DAR +F+     + + WN+MI GY  N +  EAL L+ +M++     D  T 
Sbjct: 370 ---CGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITF 426

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             VLSAC +   ++ G++      + G+       +  LD Y        AC        
Sbjct: 427 VGVLSACINADMVKEGQKYFDSISEHGI-------APTLDHY--------AC-------- 463

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
                   MIT+    G ++ A  + + MP++
Sbjct: 464 --------MITLLGRSGSVDKAVDLIQGMPHE 487



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 77/150 (51%)

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D  + + LL  Y+K G  SDA  +F  +   D    NT+++ Y+  G +E+   +F  MP
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            +  +S+N++I   + NG   +AL +   M +   +  ++S  + + AC+ +  L  G+Q
Sbjct: 117 YRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQ 176

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  R+ +  L  +  +  ++ D Y KCG I
Sbjct: 177 IHGRIVVADLGENTFVRNAMTDMYAKCGDI 206



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 23/241 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC    S++ G+ +H   +  GI NS L +++ L+ MY +CG   DA ++F+ M
Sbjct: 325 ISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSML-VSSALVDMYCKCGVTLDARVIFETM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTAR 123
           P RN  +WNAMI G+ + G   ++L L+  M Q+N    + ++  ++S    A  +K  +
Sbjct: 384 PIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQ 443

Query: 124 TLFNDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             F+ +           +  MI    R+G   +AV L + +  +   R      I +T++
Sbjct: 444 KYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYR------IWSTLL 497

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKEP 236
             CA    L+  +   SH+     + D         L NLY  CG +     V ++MKE 
Sbjct: 498 SVCAK-GDLKNAELAASHL----FELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEK 552

Query: 237 D 237
           +
Sbjct: 553 N 553


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  201 bits (511), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 200/402 (49%), Gaps = 39/402 (9%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +P    F  N++I  + +LG      + F+ +P K+  SW M+ISG AK G L  AR L 
Sbjct: 76  LPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLL 135

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
              P R+ I+W S+I  Y R   A+EAV  FK +   L E +  D   +  V+ AC+ L 
Sbjct: 136 AQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM---LSEGIAPDDVTVIGVLSACSQLK 192

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSA 243
            LE G  +H  +   G+     L  +L+++Y KCGDF  A +V + +   + P  +  +A
Sbjct: 193 DLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSW--NA 250

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I GY   G ++ AR +FD+      + +NSMI+GYI + +  EALLLF  MRR+ +  D
Sbjct: 251 IIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVD 310

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T+ S+LSAC+SLG L  G+ +H       V  D+ + +ALLD Y K            
Sbjct: 311 NFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMK------------ 358

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CGR+ +A  +F+ M  + + +W +MI GL+ NG     L+ 
Sbjct: 359 -------------------CGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEY 399

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           F  M     + +  S  +V++AC++   L  G   F  + I+
Sbjct: 400 FYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRIL 441



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 1/280 (0%)

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +SL+++Y + G      +  + +   D    + +ISG A  G ++DAR +  +     
Sbjct: 83  VANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRD 142

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W S+I+ Y   +   EA+  F  M   G+  D  T+  VLSACS L  LE G  +H 
Sbjct: 143 VISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHL 202

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIE 387
              + G+     +  AL+D Y+K G    A ++F  + +       N +I  Y   G ++
Sbjct: 203 LVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVD 262

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  M  + +I++NSMI G   +G   EAL LF NM + DLR+D F++ S++SACA
Sbjct: 263 VARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACA 322

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ +L  G  + A + +  +++D  I T+L+D Y KCG +
Sbjct: 323 SLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRV 362



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 156/348 (44%), Gaps = 77/348 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L +C+    + +G  LHL   +KG+ ++  L +A  L+ MY +CG+   A  +FD + R
Sbjct: 184 VLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVA--LIDMYAKCGDFGHAREVFDAVGR 241

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
                           G +          PQ    SWN +I G+ K G +  AR+LF+ M
Sbjct: 242 ----------------GRR----------PQ----SWNAIIDGYCKHGHVDVARSLFDQM 271

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
             R+ I +NSMI  Y+ +G  REA+ LF  +       L+ D F + +++ ACA L AL 
Sbjct: 272 EVRDIITFNSMITGYIHSGQLREALLLFMNMRR---HDLRVDNFTVVSLLSACASLGALP 328

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G+ +H+ I +  ++ D  +G++L+++Y K                              
Sbjct: 329 QGRALHACIELRLVETDIYIGTALLDMYMK------------------------------ 358

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CG++N+A  VF R        W +MI+G   N      L  F++MR +G   +  +  +
Sbjct: 359 -CGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIA 417

Query: 310 VLSACSSLGFLEHGK----------QVHGHACKVGVIDDVIVASALLD 347
           VL+ACS    L  G+           +H      G + D++  S LLD
Sbjct: 418 VLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 465



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 17/218 (7%)

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-------LGFLEHGKQVHGH 329
           +G  S + D    +LF +MRR  V  D  T    L  CSS       L  + H       
Sbjct: 18  AGTSSGDPDI-PFVLFRRMRRAAVRPDGFTF-HFLFKCSSSSRPRALLCTMLHA------ 69

Query: 330 ACKVGVIDDV--IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           AC   ++      VA++L+  Y++ G+  D  + F E+ V D +    +I+  +  G + 
Sbjct: 70  ACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLS 129

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA+ +    P + +ISW S+I   S+     EA+D F NM    +  D  ++  V+SAC+
Sbjct: 130 DARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACS 189

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  LELG  +   V   G+   + +  +L+D Y KCG
Sbjct: 190 QLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCG 227



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 197/496 (39%), Gaps = 61/496 (12%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +L  C+T+ ++    QLH   L  G+  +   + + L+  YM   +P  AL LF E+P +
Sbjct: 741  ILGVCSTYEAL----QLHGRVLALGLCCNPF-VGSALVNHYMHVESPHAALSLFRELPLQ 795

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGE-LKTARTL 125
            N    N ++ G   L   E+ +  F  M ++    N  S+   + G  + GE L+  R L
Sbjct: 796  NTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQL 855

Query: 126  FNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
               + +      N    NS++  Y   G   ++V   K LN  L E    D     +++ 
Sbjct: 856  HGVVLKAGWIPSNIFLSNSLVDLYSAIG---DSVDTVKALNDILSE----DVISWNSILS 908

Query: 181  ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
              AD   ++        +L +G         SL+ L GK GD+    Q+  ++ +    C
Sbjct: 909  MYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSC 968

Query: 241  LS-----ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
             S      LI  Y  C   + +  +F+     +    NS+I+  +  N    AL + H M
Sbjct: 969  SSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCM 1028

Query: 296  RRNGVLEDASTLASVLSAC--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
               GV  D  T ++ + A   S+   L   + +H    K+G   D+ V S+L        
Sbjct: 1029 IVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSL-------- 1080

Query: 354  MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                   IT Y+  G++  +  IF  + + ++I + ++I   ++
Sbjct: 1081 -----------------------ITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACAR 1117

Query: 414  NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQI 472
             G    A++LF  M    L+ D  +    I+ C      E G  V   +     LD D+ 
Sbjct: 1118 YGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDER 1177

Query: 473  ISTSLVDFYCKCGFIK 488
                +V+   + GF+K
Sbjct: 1178 HFACMVNLLSRDGFVK 1193



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 111/528 (21%), Positives = 205/528 (38%), Gaps = 105/528 (19%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R+D   +  LL +C +  ++  G+ LH   ++  ++ + + I   LL MYM+CG   +
Sbjct: 306 DLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDIYIGTALLDMYMKCGRVNE 364

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK 115
           A ++F  M +R+  +W AMI G    G  +  L+ F  M     Q N  S+  +++  + 
Sbjct: 365 ATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSH 424

Query: 116 AGELKTARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +  L   R  F++M     I      +  MI    R+G   EA+ L K +       +Q 
Sbjct: 425 SCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP------MQP 478

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---FNSAN 227
           ++ I A+++ AC     ++  +    H+L    D D+V     V LY  C D   +  A+
Sbjct: 479 NSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAV----YVQLYNICIDSRKWEDAS 534

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           ++  +M+E                       R   +T   SSV     +  ++ +++   
Sbjct: 535 KIRMLMEE-----------------------RQVKKTAGYSSVTVAGQVHKFVVSDKS-- 569

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
                       +LE  + L  +     S G+     QV         +D+      LL 
Sbjct: 570 ---------HPRILEIIAMLEEISHRLKSAGYSPITSQVTVD------VDEEEKEQTLLA 614

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG-----------RI--------ED 388
              K  +      L   L V+  I+ N   T++   G           R+         D
Sbjct: 615 HSEKLAIAFGLVSLAPNLPVH--IIKNLRPTIFRPLGADDGKQKQPDRRVVFLLPPSRRD 672

Query: 389 AKHIFRTMPN---------------KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           A  + R +P+               + + S N MI G  ++G    A  ++  M    +R
Sbjct: 673 APVLVRPIPSSPAPFSLRSSVTMAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIR 732

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
               + ++++  C+   +L    Q+  RV  +GL  +  + ++LV+ Y
Sbjct: 733 ETPHTFSTILGVCSTYEAL----QLHGRVLALGLCCNPFVGSALVNHY 776



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 37/215 (17%)

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N MI+G+I +     A  ++  M  +G+ E   T +++L  CS+   L    Q+HG    
Sbjct: 704 NRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL----QLHGRVLA 759

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  +  V SAL++ Y     P  A  LF EL + +T + N                 +
Sbjct: 760 LGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNV----------------V 803

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC-ANISS 451
            R + N  L                 E +  F +M +  L ++  S    +  C  N   
Sbjct: 804 LRGLGNLKLTE---------------ELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEW 848

Query: 452 LELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCG 485
           LE G Q+   V   G + S+  +S SLVD Y   G
Sbjct: 849 LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIG 883



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 45/252 (17%)

Query: 22   HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
             +G Q+H    K G   S++ +   L+ MY +C     +L +F+E+P       N++I  
Sbjct: 952  QLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITS 1011

Query: 82   FMKLGHKEKSLQLFNVM------PQKNDFSWNM--------------------------- 108
             +     + +L++ + M      P    FS  M                           
Sbjct: 1012 SLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFE 1071

Query: 109  --------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                    LI+ +A AG+L ++  +F  +   N I + ++I    R G    A+ LF ++
Sbjct: 1072 MDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQM 1131

Query: 161  NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGK 219
             S     L+ D       I  C      E G+ +   +  +  LD D    + +VNL  +
Sbjct: 1132 VS---SGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSR 1188

Query: 220  CGDFNSANQVLN 231
             G    A +++ 
Sbjct: 1189 DGFVKEAMEMME 1200


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 199/387 (51%), Gaps = 5/387 (1%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           + N F     IS    +G +  AR LF++MP R+ +AWNSMI  Y + GF +EA+ +F +
Sbjct: 2   RSNLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQ 61

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           + +      + D F     + ACA   +  +G +IH+ +++ G      + +SL+++YGK
Sbjct: 62  MRNT---NTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGK 118

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
           C D  SA QV   M + ++    +L+  Y N G+ ++A  +F+       + WN+MI+G 
Sbjct: 119 CFDAFSAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGL 178

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS-SLGFLEHGKQVHGHACKVGVIDD 338
               E    L +F +MR + +  D  T ++++SAC+ SL FL  G  +HG   + G    
Sbjct: 179 GRYGEIELCLDMFREMRESLLEPDQWTYSALISACTESLEFLS-GCMLHGLVIRSGWSSA 237

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           +   +++L  Y+K G  +DA K+         +  N +I  Y   G + +A  +F+++P 
Sbjct: 238 MEAKNSILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPE 297

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           K+++SW SMI G ++NG   EAL  F  M       D F+  +V+ AC++++ L  G  V
Sbjct: 298 KNIVSWTSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMV 357

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCG 485
                  G  +   +   LV+ Y KCG
Sbjct: 358 HGCAIRNGFSTYLYVGNGLVNMYAKCG 384



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 204/477 (42%), Gaps = 67/477 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    S   G ++H   +  G  +S+LP+ N L+ MY +C         FD      
Sbjct: 78  LSACAGAGSFPFGTKIHALVIILG-YHSSLPVNNSLIDMYGKC---------FDAF---- 123

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                              + Q+F  M   N+ SW  L+  +  +G    A  +FN MPR
Sbjct: 124 ------------------SAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPR 165

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +  IAWN+MI    R G     + +F+E+   L+E    D +  + +I AC +      G
Sbjct: 166 KFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEP---DQWTYSALISACTESLEFLSG 222

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H  ++ +G        +S+++LY K G  N A +V+           +A+I  Y   
Sbjct: 223 CMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKV 282

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G +N+A  +F    + + V W SMI+GY  N    EAL  F  M  N  L D  T  +VL
Sbjct: 283 GYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVL 342

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            ACSSL  L HG+ VHG A + G             TY   G                  
Sbjct: 343 HACSSLAVLGHGRMVHGCAIRNG-----------FSTYLYVG------------------ 373

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
             N ++ +Y+ CG ++ +   F  +  K L+S+N+++     +G   EAL L+ +M    
Sbjct: 374 --NGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDMMTCG 431

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
            + DK +   ++  C++   +E G   F  + ++ GL  +      +VD   + G++
Sbjct: 432 TKPDKMTFIGLLMTCSHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYL 488



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 172/405 (42%), Gaps = 86/405 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C        G  LH   ++ G  +S +   N +L +Y + G+  DAL + +   R 
Sbjct: 209 LISACTESLEFLSGCMLHGLVIRSG-WSSAMEAKNSILSLYAKFGSLNDALKVVESTGRL 267

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
              SWNA+I+ +MK+G+  ++  +F  +P+KN  SW  +I+G+A                
Sbjct: 268 TQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYA---------------- 311

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                          RNG+  EA+R F  + S+       D F    V+ AC+ LA L +
Sbjct: 312 ---------------RNGYGEEALRFFVAMASNC---FLPDDFTFGAVLHACSSLAVLGH 353

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H   + NG      +G+ LVN+Y KCGD + +    +      D C   L+S    
Sbjct: 354 GRMVHGCAIRNGFSTYLYVGNGLVNMYAKCGDLDGSILAFH------DICAKDLVS---- 403

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                +N+++  +  + + +EAL L+  M   G   D  T   +
Sbjct: 404 ---------------------FNALLFAFGLHGKASEALQLYEDMMTCGTKPDKMTFIGL 442

Query: 311 LSACSSLGFLEHG-------KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL-- 361
           L  CS  G +E G       K VHG + +    D V   + ++D   + G  ++A +L  
Sbjct: 443 LMTCSHSGLIEEGRLFFNSMKSVHGLSYEA---DHV---ACMVDMLGRGGYLAEAKELVK 496

Query: 362 -FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM----PNKSL 401
            +S+    +      ++   S+ G +E   ++ +T+    PNK +
Sbjct: 497 KYSKTSDVEASSCEALLGACSAHGEVEMGTYLGKTLKTLEPNKEI 541


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 137/516 (26%), Positives = 229/516 (44%), Gaps = 105/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++CN   ++  GK++H    + G L++ + +   LL MY +CG+  DAL +F+ +  R
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVG-LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK----------------------- 101
           N  SW AMI GF + G  E++   FN M      P +                       
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIH 430

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     +D     L+S +AK G L  AR +F  + ++N +AWN+MI  YV++    
Sbjct: 431 DRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYD 490

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            AV  F+ L   L E ++ D+    +++  C    ALE GK + S I+  G         
Sbjct: 491 NAVATFQAL---LKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGF-------- 539

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                  E D    +AL+S + NCG +  A  +F+   +   V 
Sbjct: 540 -----------------------ESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS 576

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++I+G++ + E+  A   F  M+ +GV  D  T   +L+AC+S   L  G+++H    
Sbjct: 577 WNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALIT 636

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  DV+V + L                               I++Y+ CG I+DA  
Sbjct: 637 EAALDCDVVVGTGL-------------------------------ISMYTKCGSIDDAHL 665

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  +P K++ SW SMI G +Q+G   EAL+LFC M +  ++ D  +    +SACA+   
Sbjct: 666 VFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGL 725

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ G   F  +    ++        +VD + + G +
Sbjct: 726 IKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLL 761



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 248/586 (42%), Gaps = 144/586 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C  H ++  G+++H H +K   +   + + N L+ MY +CGN   A  +FDEMP +
Sbjct: 110 LLQLCIKHKNLGDGERIHNH-IKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDK 168

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-------------------- 104
           + +SWN ++ G+++    E++ +L   M      P K  F                    
Sbjct: 169 DVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF 228

Query: 105 ------SWNM-------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                  W+        LI+   K G +  A  +FN++PRR+ I W SMI    R+   +
Sbjct: 229 SLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFK 288

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A  LF+ +     E +Q D     +++ AC    ALE GK++H+ +   GLD +  +G+
Sbjct: 289 QACNLFQVMEE---EGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGT 345

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y K                               CG M DA  VF+     + V 
Sbjct: 346 ALLSMYTK-------------------------------CGSMEDALEVFNLVKGRNVVS 374

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MI+G+  +    EA L F+KM  +G+  +  T  S+L ACS    L+ G+Q+H    
Sbjct: 375 WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G I D  V +ALL  Y+K G   DA  +F  +   + +  N MIT Y    + ++A  
Sbjct: 435 KAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVA 494

Query: 392 IFRTM------PNKS----------------LISW-----------------NSMIVGLS 412
            F+ +      P+ S                L  W                 N+++    
Sbjct: 495 TFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFV 554

Query: 413 QNGSPIEALDLFCNMNKLDL-------------------------------RMDKFSLAS 441
             G  + A++LF +M + DL                               + D+ +   
Sbjct: 555 NCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTG 614

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +++ACA+  +L  G ++ A +T   LD D ++ T L+  Y KCG I
Sbjct: 615 LLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSI 660



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 143/310 (46%), Gaps = 62/310 (20%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           ++++  C     L  G++IH+HI  + +  D  + + L+++Y KCG+ NSA Q+ + M +
Sbjct: 108 SSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPD 167

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            D +  + L+                                GY+ +    EA  L  +M
Sbjct: 168 KDVYSWNLLL-------------------------------GGYVQHRRYEEAFRLHEQM 196

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            ++GV  D  T   +L+AC+    ++ G ++       G   D+ V +AL++ + K G  
Sbjct: 197 VQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGV 256

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
            DA K+F+ L                               P + LI+W SMI GL+++ 
Sbjct: 257 DDALKVFNNL-------------------------------PRRDLITWTSMITGLARHR 285

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A +LF  M +  ++ DK +  S++ AC +  +LE G++V AR+  +GLD++  + T
Sbjct: 286 QFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGT 345

Query: 476 SLVDFYCKCG 485
           +L+  Y KCG
Sbjct: 346 ALLSMYTKCG 355


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 140/517 (27%), Positives = 239/517 (46%), Gaps = 105/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +GKQ+H   +  G  +S   +AN L+ +Y +CG   DA  LFD +P R
Sbjct: 16  VLKACTVTKDLVLGKQVHGIVVVTG-FDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK----------------------- 101
           +  SWNA+   ++      +++ LF+ M      P +                       
Sbjct: 75  SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIH 134

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     + FS N L+  +AK G L+ A ++F+++ + + ++WN++I   V + +  
Sbjct: 135 GYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHH 194

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ L +E+N      +  + F L++ + ACA +A  E G+Q+HS ++   +  DS LG 
Sbjct: 195 RALELLREMNKS---GMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGV 251

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
            L+++Y K                               C  M+DAR VF    +   + 
Sbjct: 252 GLIDMYSK-------------------------------CNSMDDARLVFKLMPERDMIA 280

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++ISG+  N ED EA  LF  M   G+  + +TL++VL + ++L      +Q+H  + 
Sbjct: 281 WNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSL 340

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G   D  V ++L+DTY K G   DA ++F E  + D +L  +++T Y           
Sbjct: 341 KSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAY----------- 389

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                               +Q+G   EAL L+  M    ++ D F  +S+++ACA++S+
Sbjct: 390 --------------------AQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSA 429

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            E G+QV   +   G  SD     SLV+ Y KCG I+
Sbjct: 430 YEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIE 466



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 232/519 (44%), Gaps = 108/519 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C        G+++H + +K G  +S    AN L+ MY + G   DA  +FDE+
Sbjct: 114 LSSMINVCTGLEDSVQGRKIHGYLIKLG-YDSDAFSANALVDMYAKVGILEDASSVFDEI 172

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM------------------- 108
            + +  SWNA+I G +   +  ++L+L   M  K+    NM                   
Sbjct: 173 AKPDIVSWNAIIAGCVLHEYHHRALELLREM-NKSGMCPNMFTLSSALKACAGMALRELG 231

Query: 109 ---------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                LI  ++K   +  AR +F  MP R+ IAWN++I  + +N
Sbjct: 232 RQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQN 291

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
               EA  LF  +++   E +  +   L+TV+ + A L A    +QIH+  L +G +FD 
Sbjct: 292 EEDEEAASLFPLMHT---EGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFD- 347

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                         ++ +++LI  Y  CG + DA RVF+ +   
Sbjct: 348 ------------------------------NYVVNSLIDTYGKCGHVEDATRVFEESPIV 377

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V++ S+++ Y  + +  EAL L+ +M+  G+  D+   +S+L+AC+SL   E GKQVH
Sbjct: 378 DLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVH 437

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            H  K G + D+   ++L++ Y+K G                                IE
Sbjct: 438 VHILKFGFMSDIFAGNSLVNMYAKCG-------------------------------SIE 466

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA   F  +P + ++SW++MI GL+Q+G   EAL LF  M K+ +  +  +L SV+ AC 
Sbjct: 467 DASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACN 526

Query: 448 NISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCG 485
           +   +   +  F  + I+ G++  Q     ++D   + G
Sbjct: 527 HAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAG 565



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 149/317 (47%), Gaps = 62/317 (19%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           ++C+ F   +V+ AC     L  GKQ+H  ++V G D D  + +SLV LY KCG F    
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGF---- 61

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                       DAR +FD   D S V WN++ S Y+ ++   E
Sbjct: 62  ---------------------------GDARSLFDAIPDRSVVSWNALFSCYVHSDMHGE 94

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+ LFH M  +G+  +  +L+S+++ C+ L     G+++HG+  K+G   D   A+AL+D
Sbjct: 95  AVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVD 154

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y+K G+  DA  +F E+   D                               ++SWN++
Sbjct: 155 MYAKVGILEDASSVFDEIAKPD-------------------------------IVSWNAI 183

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G   +     AL+L   MNK  +  + F+L+S + ACA ++  ELG Q+ + +  + +
Sbjct: 184 IAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDM 243

Query: 468 DSDQIISTSLVDFYCKC 484
            SD  +   L+D Y KC
Sbjct: 244 GSDSFLGVGLIDMYSKC 260



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 17/234 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C +  +   GKQ+H+H LK G ++      N L+ MY +CG+  DA   F  +P R
Sbjct: 420 LLNACASLSAYEQGKQVHVHILKFGFMSDIFA-GNSLVNMYAKCGSIEDASCAFSRIPVR 478

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
              SW+AMI G  + G+ +++LQLF  M +     N  +   ++     AG +  A+  F
Sbjct: 479 GIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYF 538

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M     I      +  MI    R G    A+ L  ++        Q +A +   ++GA
Sbjct: 539 NSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMP------FQANALVWGALLGA 592

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 ++ G+Q    +L    +  S     L N+Y   G ++   +V  +MK+
Sbjct: 593 ARIHKNIDLGEQAAEMLLALEPE-KSGTHVLLANIYASVGMWDKVARVRRLMKD 645



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           M+ L ++ ++F+  SV+ AC     L LG+QV   V + G DSD+ ++ SLV  Y KCG
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCG 59


>gi|15231572|ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26540
 gi|9293933|dbj|BAB01836.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643655|gb|AEE77176.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 700

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 248/518 (47%), Gaps = 82/518 (15%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFDE 66
           RL +SC++   +   +++  H     +  S LP   + NR ++ Y +CG   DA  LF+E
Sbjct: 66  RLFRSCSSKALVVQARKVQSHL----VTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEE 121

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------------- 100
           MP R+  SWNA+I    + G  ++  ++F  M +                          
Sbjct: 122 MPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLL 181

Query: 101 --------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                   K  +S N+     ++  + K   +  AR +F+++   + ++WN ++  Y+  
Sbjct: 182 RQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEM 241

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           GF  EAV +F ++    V  L      +++V+ AC+   ALE GK IH+  +   +  D+
Sbjct: 242 GFNDEAVVMFFKMLELNVRPLN---HTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADT 298

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           V+ +S+ ++Y KC    SA +V +  +  D    ++ +SGYA  G   +AR +FD   + 
Sbjct: 299 VVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPER 358

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           + V WN+M+ GY+  +E  EAL     MR+     D  TL  +L+ CS +  ++ GKQ H
Sbjct: 359 NIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAH 418

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   + G   +VIVA+ALLD Y K                               CG ++
Sbjct: 419 GFIYRHGYDTNVIVANALLDMYGK-------------------------------CGTLQ 447

Query: 388 DAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            A   FR M   +  +SWN+++ G+++ G   +AL  F  M +++ +  K++LA++++ C
Sbjct: 448 SANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM-QVEAKPSKYTLATLLAGC 506

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ANI +L LG+ +   +   G   D +I  ++VD Y KC
Sbjct: 507 ANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKC 544



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 196/404 (48%), Gaps = 34/404 (8%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
            L    P    F  N  I  + K G +  AR LF +MP R+  +WN++I    +NG + E
Sbjct: 86  HLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDE 145

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
             R+F+ +N D V   +      A V+ +C  +  L   +Q+H  ++  G   +  L +S
Sbjct: 146 VFRMFRRMNRDGVRATETS---FAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETS 202

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           +V++YGKC                                 M+DARRVFD   + S V W
Sbjct: 203 IVDVYGKCR-------------------------------VMSDARRVFDEIVNPSDVSW 231

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N ++  Y+    + EA+++F KM    V     T++SV+ ACS    LE GK +H  A K
Sbjct: 232 NVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVK 291

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           + V+ D +V++++ D Y K      A ++F + +  D     + ++ Y+  G   +A+ +
Sbjct: 292 LSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREAREL 351

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP ++++SWN+M+ G        EALD    M +    +D  +L  +++ C+ IS +
Sbjct: 352 FDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDV 411

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++G+Q    +   G D++ I++ +L+D Y KCG ++    +  Q
Sbjct: 412 QMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQ 455



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 212/490 (43%), Gaps = 100/490 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ +C+   ++ VGK +H   +K  ++  T+ ++  +  MY++C     A  +FD+ 
Sbjct: 266 VSSVMLACSRSLALEVGKVIHAIAVKLSVVADTV-VSTSVFDMYVKCDRLESARRVFDQT 324

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SW + + G+   G   ++ +LF++MP++N  SWN ++ G+  A E         
Sbjct: 325 RSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHE--------- 375

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                    W+  +               F  L    +E +  D   L  ++  C+ ++ 
Sbjct: 376 ---------WDEALD--------------FLTLMRQEIENI--DNVTLVWILNVCSGISD 410

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALIS 246
           ++ GKQ H  I  +G D + ++ ++L+++YGKCG   SAN     M E  D+   +AL++
Sbjct: 411 VQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLT 470

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           G A  G+                                 +AL  F  M+         T
Sbjct: 471 GVARVGR-------------------------------SEQALSFFEGMQVEAK-PSKYT 498

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           LA++L+ C+++  L  GK +HG   + G   DV++  A++D YSK       C+ F    
Sbjct: 499 LATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSK-------CRCF---- 547

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                               + A  +F+    + LI WNS+I G  +NG   E  +LF  
Sbjct: 548 --------------------DYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFML 587

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG 485
           +    ++ D  +   ++ AC     +ELG Q F+ ++     S Q+     +++ YCK G
Sbjct: 588 LENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELYCKYG 647

Query: 486 FIKMDEYYLM 495
            +   E +L+
Sbjct: 648 CLHQLEEFLL 657


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 203/400 (50%), Gaps = 35/400 (8%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +P    F  N++I  +++LG    + + F+ +  K+  +W MLISG AK G L   + L 
Sbjct: 137 LPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLL 196

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           +  P R+ I+W S+I  Y R   AREAV  FK +   L   +  D   +  V+ ACA L 
Sbjct: 197 SQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM---LSHGIAPDEVTVIAVLSACAKLK 253

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEPDDFCLSALI 245
            LE G+ +H  +   G+     L  +L+++Y KCGDF  A QV + + + P     +A+I
Sbjct: 254 DLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAII 313

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY   G ++ AR +FD       + +NSM++GYI + +  EALLLF  MRR+ +  D  
Sbjct: 314 DGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNF 373

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T+ ++L+AC+SLG L+ G+ +H    +  V  D+ + +ALLD Y K              
Sbjct: 374 TVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMK-------------- 419

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                            CGR+++A  +F+ M  + + +W +MI GL+ NG    AL+ F 
Sbjct: 420 -----------------CGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFY 462

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
            M     + +  S  +V++AC++   L  G   F  + I+
Sbjct: 463 QMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRIL 502



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 3/284 (1%)

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +SL+++Y + G    A +  + +   D    + LISG A  G + D + +  +     
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W S+I+ Y   N   EA+  F  M  +G+  D  T+ +VLSAC+ L  LE G+ +H 
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHL 263

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIE 387
              + G+     +  AL+D Y+K G    A ++F  L +       N +I  Y   G ++
Sbjct: 264 LVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVD 323

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  M  + +I++NSM+ G   +G   EAL LF +M + DLR+D F++ ++++ACA
Sbjct: 324 VARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACA 383

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++ +L+ G  + A +    +++D  + T+L+D Y KCG  ++DE
Sbjct: 384 SLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCG--RVDE 425



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 8/235 (3%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A  +FDR   ++ +   ++ +   + ++     LLF +MRR GV  D  T    L  CSS
Sbjct: 56  ALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTF-HFLFKCSS 114

Query: 317 LGFLEHG----KQVHGHACKVGVIDDV--IVASALLDTYSKRGMPSDACKLFSELKVYDT 370
                H       +H  AC   ++      V+++L+  Y + G+ +DA + F E+ V D 
Sbjct: 115 SSSRPHSLLLCTMLHA-ACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDA 173

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +    +I+  +  G + D + +    P + +ISW S+I   S+     EA+  F  M   
Sbjct: 174 VAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSH 233

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  D+ ++ +V+SACA +  LELG  +   V   G+ + + +  +L+D Y KCG
Sbjct: 234 GIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCG 288


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 202/398 (50%), Gaps = 39/398 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF+ MP++++ +W  +I+G+ +  +L  AR +F  M      AWN+MI  YV  G  +E
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQE 272

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD----FDSV 208
           A+ L +++       +Q D     T+I ACA++ + + GKQ+H++IL N L+    F   
Sbjct: 273 ALTLCRKMR---FLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLS 329

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+ LY K    + A ++   M   +    +A++SGY N G+M +A+  F+     +
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            +    MISG   N    E L LF +MR +G        A  L+ACS LG LE+G+Q+H 
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA 449

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
               +G    + V                                N MI++Y+ CG +E 
Sbjct: 450 QLVHLGYESSLSVG-------------------------------NAMISMYAKCGVVEA 478

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F TMP+  L+SWNSMI  L Q+G  ++A++LF  M K  +  D+ +  +V++AC++
Sbjct: 479 AESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSH 538

Query: 449 ISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCG 485
              +E G   F + +   G+   +     +VD +C+ G
Sbjct: 539 AGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAG 576



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/511 (27%), Positives = 241/511 (47%), Gaps = 55/511 (10%)

Query: 1   MDTRI--DYLARLLQSCNTHH--SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN 56
           +D R+  +  A  LQ C+     S  + + +H H +  G         NRLL+MY +  N
Sbjct: 5   LDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASG-FKPRGHFLNRLLEMYCKSSN 63

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
              A  LF+E+                               P  +  +   LI+ +   
Sbjct: 64  LVYARQLFEEI-------------------------------PNPDAIARTTLITAYCAL 92

Query: 117 GELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           G L+  R +FN  P   R+++ +N+MI  Y  NG    A+ LF+ +  D     + D F 
Sbjct: 93  GNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD---DFRPDDFT 149

Query: 175 LATVIGACADLAALEYG-KQIHSHILVNGLD-FDSVLGSSLVNLYGK--------CGDFN 224
             +V+ A       E    Q+H  ++  G+    S + ++L+++Y K        C    
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMV 209

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
           SA ++ + M + D+   + +I+GY     +N AR VF+   +     WN+MISGY+    
Sbjct: 210 SARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGC 269

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD----VI 340
             EAL L  KMR  G+  D  T  +++SAC+++G  + GKQVH +  K  +  +    + 
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLS 329

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V++AL+  Y K     +A K+F  + V + I  N +++ Y + GR+E+AK  F  MP K+
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           L++   MI GL+QNG   E L LF  M         F+ A  ++AC+ + +LE G Q+ A
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA 449

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++  +G +S   +  +++  Y KCG ++  E
Sbjct: 450 QLVHLGYESSLSVGNAMISMYAKCGVVEAAE 480



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  L +C+   ++  G+QLH   +  G   S+L + N ++ MY +CG    A  +F  M
Sbjct: 428 FAGALTACSVLGALENGRQLHAQLVHLG-YESSLSVGNAMISMYAKCGVVEAAESVFVTM 486

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----SWNMLISGFAKAGELKTAR 123
           P  +  SWN+MI    + GH  K+++LF+ M ++  F    ++  +++  + AG ++  R
Sbjct: 487 PSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGR 546

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M     I      +  M+  + R G    A  +   + S     +  +A +    
Sbjct: 547 HYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVW-EALLAGCR 605

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           I    DL  +E  +Q+   +  N  D   VL   L N+Y   G +N   +V  +M++
Sbjct: 606 IHGNMDL-GIEAAEQLFKLMPQN--DGTYVL---LSNIYADVGRWNEVAKVRKLMRD 656


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 222/487 (45%), Gaps = 79/487 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH-------- 87
           I N T+   N +L  Y +      AL +F  MP R+  SWN +I    K G         
Sbjct: 220 IKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMV 279

Query: 88  -------------------------------KEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
                                          K+  +Q+   +P  + +  + ++  +AK 
Sbjct: 280 VDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKC 339

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K A+ +F+ +  RN+++W  +I  +++ G   E+V LF ++ ++L   +  D F LA
Sbjct: 340 GCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAEL---MAVDQFALA 396

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C +   +  G Q+HS  L +G     V+ +SL+++Y KCG+  +A  + N M E 
Sbjct: 397 TLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAER 456

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    + +I+ Y+  G +  AR  FD  +  + + WN+M+  YI +  + + L ++  M 
Sbjct: 457 DIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDML 516

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
               V+ D  T  ++   C+ +G  + G Q+ GH  KVG+I                   
Sbjct: 517 TEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLI------------------- 557

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                        DT ++N +IT+YS CGRI +A+  F  +  K L+SWN+MI G SQ+G
Sbjct: 558 ------------LDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHG 605

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A+++F ++     + D  S  +V+S C++   +E G+  F       +  D  IS 
Sbjct: 606 MGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDM-----MKRDHNISP 660

Query: 476 SLVDFYC 482
            L  F C
Sbjct: 661 GLEHFSC 667



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 205/413 (49%), Gaps = 35/413 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            A+++  ++ G  + + + F+ +        N ++ G+AK+  +  A  +F  MP R+ +
Sbjct: 198 TALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVV 257

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN +I    ++G  REA+ +  +++   V   + D+    + + ACA L++LE+GKQ+H
Sbjct: 258 SWNMVISALSKSGRVREALDMVVDMHGKGV---RPDSTTYTSSLTACARLSSLEWGKQLH 314

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
                                           QV+  +   D +  SA++  YA CG   
Sbjct: 315 V-------------------------------QVIRNLPHIDPYVASAMVELYAKCGCFK 343

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A+RVF    D +SV W  +I G++     +E++ LF++MR   +  D   LA+++S C 
Sbjct: 344 EAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCC 403

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +   +  G Q+H    K G    V+V+++L+  Y+K G   +A  +F+ +   D +    
Sbjct: 404 NTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTG 463

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRM 434
           MIT YS  G I  A+  F  M  +++I+WN+M+    Q+G+  + L ++ +M  + D+  
Sbjct: 464 MITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIP 523

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           D  +  ++   CA+I + +LG+Q+      +GL  D  +  +++  Y KCG I
Sbjct: 524 DWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRI 576



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 216/493 (43%), Gaps = 74/493 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC       V  QL L  L K        +   L+ M +RCG    A   F  +   
Sbjct: 165 VMKSCGALGWHEVALQL-LGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNP 223

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM- 129
                N+M+ G+ K    + +L++F  MP+++  SWNM+IS  +K+G ++ A  +  DM 
Sbjct: 224 TIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMH 283

Query: 130 ------------------PRRNAIAW--------------------NSMIHCYVRNGFAR 151
                              R +++ W                    ++M+  Y + G  +
Sbjct: 284 GKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFK 343

Query: 152 EAVRLFKEL----------------------------NSDLVERLQCDAFILATVIGACA 183
           EA R+F  L                            N    E +  D F LAT+I  C 
Sbjct: 344 EAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCC 403

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           +   +  G Q+HS  L +G     V+ +SL+++Y KCG+  +A  + N M E D    + 
Sbjct: 404 NTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTG 463

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLE 302
           +I+ Y+  G +  AR  FD  +  + + WN+M+  YI +  + + L ++  M     V+ 
Sbjct: 464 MITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIP 523

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D  T  ++   C+ +G  + G Q+ GH  KVG+I D  V +A++  YSK G  S+A K F
Sbjct: 524 DWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAF 583

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPI 418
             L   D +  N MIT YS  G  + A  IF  + NK      IS+ +++ G S +G  +
Sbjct: 584 DFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSG-LV 642

Query: 419 EALDLFCNMNKLD 431
           E    + +M K D
Sbjct: 643 EEGKFYFDMMKRD 655



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 219/485 (45%), Gaps = 66/485 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDE 66
           LA  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LL DE
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVG-LASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +   N  + N M+                               +G+AK G L  A  LF
Sbjct: 87  ITEPNVITHNIMM-------------------------------NGYAKLGSLSDAVELF 115

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             MP R+  +WN+++  Y ++G    A+ +F  +          +AF    V+ +C  L 
Sbjct: 116 GRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ--TGDSLPNAFTFGCVMKSCGALG 173

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
             E   Q+   +       D  + ++LV++  +CG  + A++  + +K P   C ++++ 
Sbjct: 174 WHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLV 233

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GYA    ++ A  +F    +   V WN +IS    +    EAL +   M   GV  D++T
Sbjct: 234 GYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTT 293

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             S L+AC+ L  LE GKQ+H     V VI               R +P           
Sbjct: 294 YTSSLTACARLSSLEWGKQLH-----VQVI---------------RNLPH---------- 323

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
             D  + + M+ +Y+ CG  ++AK +F ++ +++ +SW  +I G  Q G   E+++LF  
Sbjct: 324 -IDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQ 382

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M    + +D+F+LA++IS C N   + LG Q+ +     G     ++S SL+  Y KCG 
Sbjct: 383 MRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGN 442

Query: 487 IKMDE 491
           ++  E
Sbjct: 443 LQNAE 447



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 137/318 (43%), Gaps = 67/318 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C     I +G QLH   LK G   + + ++N L+ MY +CGN  +A L+F+ M
Sbjct: 395 LATLISGCCNTMDICLGSQLHSLCLKSGHTRAVV-VSNSLISMYAKCGNLQNAELIFNFM 453

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW  MI  + ++G+  K+ + F+ M  +N  +WN                    
Sbjct: 454 AERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWN-------------------- 493

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQCDAFILATVIGACADLA 186
                      +M+  Y+++G   + ++++ ++   L E+ +  D     T+   CAD+ 
Sbjct: 494 -----------AMLGAYIQHGAEEDGLKMYSDM---LTEKDVIPDWVTYVTLFRGCADIG 539

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           A + G QI  H +  GL  D+ + ++++ +Y KCG  + A +  + +   D    +A+I+
Sbjct: 540 ANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMIT 599

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GY+  G    A  +FD                                +   G   D  +
Sbjct: 600 GYSQHGMGKQAIEIFD-------------------------------DILNKGAKPDYIS 628

Query: 307 LASVLSACSSLGFLEHGK 324
             +VLS CS  G +E GK
Sbjct: 629 YVAVLSGCSHSGLVEEGK 646


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 201/410 (49%), Gaps = 64/410 (15%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++    K G  +++ +LF+ MP ++ ++WN++IS +A  G L  AR LFN+ P +N+I
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSI 100

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W+S++  Y +NG   E +R F ++ SD  +  Q   + L +V+ AC+ L+ L  GK IH
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQ---YTLGSVLRACSTLSLLHTGKMIH 157

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            + +   L+ +  + + LV++Y KC     A  +   + +  ++                
Sbjct: 158 CYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNY---------------- 201

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                         V W +M++GY  N E  +A+  F +MR  G+  +  T  S+L+AC+
Sbjct: 202 --------------VQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACT 247

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+     G+QVHG     G   +V V SAL+D Y+K                        
Sbjct: 248 SISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAK------------------------ 283

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  CG +  A+ I  TM    ++ WNSMIVG   +G   EAL LF  M+  D+R+D
Sbjct: 284 -------CGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            F+  SV+ + A+  +L++GE V +     G D+ + +S +LVD Y K G
Sbjct: 337 DFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQG 386



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 209/481 (43%), Gaps = 105/481 (21%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N ++  Y   GN  +A  LF+E P +N  +W++++ G+ K G + + L+ F+ M      
Sbjct: 72  NIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQK 131

Query: 99  P---------------------------------QKNDFSWNMLISGFAKAGELKTARTL 125
           P                                 + N F    L+  ++K   L  A  L
Sbjct: 132 PSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYL 191

Query: 126 FNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           F  +P R+N + W +M+  Y +NG + +A++ FKE+ +   + ++ + F   +++ AC  
Sbjct: 192 FFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRN---QGMESNHFTFPSILTACTS 248

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           ++A  +G+Q+H  I+ +G                                 P+ +  SAL
Sbjct: 249 ISAYAFGRQVHGCIIWSGFG-------------------------------PNVYVQSAL 277

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  YA CG +  AR + D       V WNSMI G +++    EAL+LFHKM    +  D 
Sbjct: 278 VDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDD 337

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T  SVL + +S   L+ G+ VH    K G                      DACK  S 
Sbjct: 338 FTYPSVLKSLASCKNLKIGESVHSLTIKTGF---------------------DACKTVS- 375

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                    N ++ +Y+  G +  A  +F  + +K +ISW S++ G   NG   +AL LF
Sbjct: 376 ---------NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLF 426

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           C+M    + +D+F +A V SACA ++ +E G QV A        S      SL+  Y KC
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKC 486

Query: 485 G 485
           G
Sbjct: 487 G 487



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 222/496 (44%), Gaps = 83/496 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C+T   +H GK +H + +K   L + + +A  L+ MY +C    +A  LF  +
Sbjct: 137 LGSVLRACSTLSLLHTGKMIHCYAIKIQ-LEANIFVATGLVDMYSKCKCLLEAEYLFFSL 195

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW---------------- 106
           P R+N   W AM+ G+ + G   K++Q F  M     + N F++                
Sbjct: 196 PDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFG 255

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              + L+  +AK G+L +AR + + M   + + WNSMI   V +
Sbjct: 256 RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTH 315

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G+  EA+ LF ++++     ++ D F   +V+ + A    L+ G+ +HS  +  G D   
Sbjct: 316 GYMEEALVLFHKMHN---RDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACK 372

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++LV++Y K G+ + A  V N + + D    ++L+                      
Sbjct: 373 TVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLV---------------------- 410

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                    +GY+ N    +AL LF  MR   V  D   +A V SAC+ L  +E G+QVH
Sbjct: 411 ---------TGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVH 461

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +  K      +   ++L+  Y+K G   DA ++F  ++  + I    +I  Y+  G +E
Sbjct: 462 ANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVE 521

Query: 388 DAKHIFRTMPNKSLIS-----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
             +  F +M     I      +  MI  L + G   EA  L   +N++D+  D     S+
Sbjct: 522 TGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHL---LNRMDVEPDATIWKSL 578

Query: 443 ISACANISSLELGEQV 458
           +SAC    +LELGE+ 
Sbjct: 579 LSACRVHGNLELGERA 594



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 211/478 (44%), Gaps = 102/478 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  +   G+Q+H   +  G     + + + L+ MY +CG+   A ++ D M   
Sbjct: 242 ILTACTSISAYAFGRQVHGCIIWSG-FGPNVYVQSALVDMYAKCGDLASARMILDTMEID 300

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW-------------------- 106
           +   WN+MI G +  G+ E++L LF+ M  +    +DF++                    
Sbjct: 301 DVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVH 360

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+  +AK G L  A  +FN +  ++ I+W S++  YV NGF  
Sbjct: 361 SLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHE 420

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A++LF ++ +    R+  D F++A V  ACA+L  +E+G+Q+H++ + +         +
Sbjct: 421 KALQLFCDMRT---ARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAEN 477

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT---- 267
           SL+ +Y KCG    A +V + M+  +    +A+I GYA  G +   +  F+         
Sbjct: 478 SLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIK 537

Query: 268 -SSVMWNSMI-----SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
            +S  +  MI     +G I+  E        H + R  V  DA+   S+LSAC   G LE
Sbjct: 538 PASDHYACMIDLLGRAGKINEAE--------HLLNRMDVEPDATIWKSLLSACRVHGNLE 589

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G++   +  K+                     PS++            +LL+ M +V  
Sbjct: 590 LGERAGKNLIKLE--------------------PSNSLPY---------VLLSNMFSV-- 618

Query: 382 SCGRIEDAKHIFRTM--------PNKSLISWNSMI-VGLSQNGSPIEALDLFCNMNKL 430
             GR EDA HI R M        P  S I   S +   +S++ S   A +++  ++++
Sbjct: 619 -AGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEM 675



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 82/151 (54%)

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           ++ LL   SK G   +A KLF ++   D    N MI+ Y++ G + +A+ +F   P K+ 
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNS 99

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           I+W+S++ G  +NG  +E L  F  M     +  +++L SV+ AC+ +S L  G+ +   
Sbjct: 100 ITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCY 159

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
              I L+++  ++T LVD Y KC  +   EY
Sbjct: 160 AIKIQLEANIFVATGLVDMYSKCKCLLEAEY 190



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 123/258 (47%), Gaps = 20/258 (7%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D RID      +L+S  +  ++ +G+ +H   +K G  ++   ++N L+ MY + GN + 
Sbjct: 332 DIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTG-FDACKTVSNALVDMYAKQGNLSC 390

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKAGE 118
           AL +F+++  ++  SW +++ G++  G  EK+LQLF ++   + D    ++   F+   E
Sbjct: 391 ALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAE 450

Query: 119 LKT---ARTLFNDMPRRNA----IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           L      R +  +  + +A     A NS+I  Y + G   +A+R+F  + +        +
Sbjct: 451 LTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETR-------N 503

Query: 172 AFILATVIGACADLAALEYGKQ-IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
                 +I   A    +E G+    S   V G+   S   + +++L G+ G  N A  +L
Sbjct: 504 VISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLL 563

Query: 231 NMMK-EPDDFCLSALISG 247
           N M  EPD     +L+S 
Sbjct: 564 NRMDVEPDATIWKSLLSA 581


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/522 (26%), Positives = 242/522 (46%), Gaps = 91/522 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++ +    +  G+Q+H   +K G  +S++ +AN L+ MY +CG   D   +FD +  R
Sbjct: 98  VLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDR 157

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------------- 102
           +  SWN+ I    +    E++L+ F  M  +N                            
Sbjct: 158 DQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGK 217

Query: 103 -------------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                         F+ N L++ +AK G +  ++ LF     R+ ++WN+MI  + ++  
Sbjct: 218 QLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDR 277

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSV 208
             EA+  F+ +   ++E ++ D   +A+V+ AC+ L  L+ GK+IH+++L N  L  +S 
Sbjct: 278 FSEALAFFRLM---VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSF 334

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+LV++Y                                NC ++   RRVFD      
Sbjct: 335 VGSALVDMY-------------------------------CNCRQVESGRRVFDHILGRR 363

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             +WN+MISGY  N  D +AL+LF +M +  G+L + +T+ASV+ AC       + + +H
Sbjct: 364 IELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIH 423

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G+A K+G  +D  V +AL+D YS+ G    +  +F  ++V D +  NTMIT Y   GR  
Sbjct: 424 GYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYS 483

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           +A  +   M                + G P               + +  +L +V+  CA
Sbjct: 484 NALVLLHEMQRMENTKDVKKDDNDDEKGGP--------------YKPNAITLMTVLPGCA 529

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            ++++  G+++ A      L SD  + ++LVD Y KCG + +
Sbjct: 530 ALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNL 571



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 180/389 (46%), Gaps = 73/389 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++ + K G +     +F+ +  R+ ++WNS I    R     +A+  F+ +    +E
Sbjct: 132 NTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQ---ME 188

Query: 167 RLQCDAFILATVIGACADLA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            ++  +F L +V  AC++L     L  GKQ+H + L                   + GD 
Sbjct: 189 NMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSL-------------------RVGDQ 229

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            +             F  +AL++ YA  G+++D++ +F+   D   V WN+MIS +  ++
Sbjct: 230 KT-------------FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSD 276

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVA 342
             +EAL  F  M   GV  D  T+ASVL ACS L  L+ GK++H +  +   +I++  V 
Sbjct: 277 RFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVG 336

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           SAL+D                               +Y +C ++E  + +F  +  + + 
Sbjct: 337 SALVD-------------------------------MYCNCRQVESGRRVFDHILGRRIE 365

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFAR 461
            WN+MI G ++NG   +AL LF  M K+  L  +  ++ASV+ AC +  +    E +   
Sbjct: 366 LWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGY 425

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
              +G   D+ +  +L+D Y + G  KMD
Sbjct: 426 AVKLGFKEDRYVQNALMDMYSRMG--KMD 452



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 193/465 (41%), Gaps = 113/465 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C+    + VGK++H + L+   L     + + L+ MY  C        +FD +
Sbjct: 300 IASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI 359

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMP----------- 99
             R    WNAMI G+ + G  EK+L LF                 +VMP           
Sbjct: 360 LGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNK 419

Query: 100 ------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                       +++ +  N L+  +++ G++  + T+F+ M  R+ ++WN+MI  YV +
Sbjct: 420 ESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLS 479

Query: 148 GFAREAVRLFKELN--------------SDLVERLQCDAFILATVIGACADLAALEYGKQ 193
           G    A+ L  E+                +     + +A  L TV+  CA LAA+  GK+
Sbjct: 480 GRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKE 539

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           IH++ + N L  D  +GS+LV++Y KCG                  CL            
Sbjct: 540 IHAYAIRNMLASDITVGSALVDMYAKCG------------------CL------------ 569

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-----RRNGVLEDASTLA 308
            N +RRVF+   + + + WN +I     + +  EAL LF  M     R      +  T  
Sbjct: 570 -NLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFI 628

Query: 309 SVLSACSSLGFLEHG-------KQVHG-------HACKVGVIDDVIVASALLDTYS-KRG 353
           +V +ACS  G +  G       K  HG       +AC   V+D +  A  L + Y     
Sbjct: 629 TVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYAC---VVDLLGRAGQLEEAYELVNT 685

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           MP++    F ++  + ++L    I      G +  AK++    PN
Sbjct: 686 MPAE----FDKVGAWSSLLGACRIHQNVELGEVA-AKNLLHLEPN 725



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 36/224 (16%)

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S+  W   +     +N+  EA+  + +M  +G   D     +VL A S L  L+ G+Q+H
Sbjct: 56  STASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIH 115

Query: 328 GHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
             A K G     V VA+ L++ Y K G   D CK+F                      RI
Sbjct: 116 AAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFD---------------------RI 154

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            D          +  +SWNS I  L +     +AL+ F  M   ++ +  F+L SV  AC
Sbjct: 155 TD----------RDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALAC 204

Query: 447 ANIS---SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +N+     L LG+Q+      +G D     + +L+  Y K G +
Sbjct: 205 SNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRV 247



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 21/242 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    +I  GK++H + ++  +L S + + + L+ MY +CG    +  +F+EM
Sbjct: 521 LMTVLPGCAALAAIAKGKEIHAYAIRN-MLASDITVGSALVDMYAKCGCLNLSRRVFNEM 579

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------PQKNDFSWNMLISGFAKAGE 118
           P +N  +WN +I      G  E++L+LF  M          + N+ ++  + +  + +G 
Sbjct: 580 PNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGL 639

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRN--GFAREAVRLFKELNSDLVERLQCDAFILA 176
           +     LF  M   + +   S  +  V +  G A +    ++ +N+   E  +  A+  +
Sbjct: 640 ISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAW--S 697

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMM 233
           +++GAC     +E G+    ++    L  +  + S  V   N+Y   G +N A +V   M
Sbjct: 698 SLLGACRIHQNVELGEVAAKNL----LHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 753

Query: 234 KE 235
           ++
Sbjct: 754 RQ 755



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
           T P++S  SW   +   +++    EA+  +  M     R D F+  +V+ A + +  L+ 
Sbjct: 51  TSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKT 110

Query: 455 GEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGFI 487
           GEQ+ A     G  S  + ++ +LV+ Y KCG I
Sbjct: 111 GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGI 144


>gi|297818196|ref|XP_002876981.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322819|gb|EFH53240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 249/515 (48%), Gaps = 76/515 (14%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           RL +SC++   +   +++  H +    L  +  + NR ++ Y +CG   DA  LF++MP 
Sbjct: 66  RLFRSCSSKSLVVQARKVQSHLVTFSPLPPSF-LLNRAIEAYGKCGCVDDARELFEQMPE 124

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------------- 100
           R+  SWNA+I    + G  ++  ++F+ M +                             
Sbjct: 125 RDGGSWNAVITACAQNGVSDEVFRMFHRMNRDGVRATETSFAGVLKSCGLVLDLRLLMQL 184

Query: 101 -----KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                K  +S N+     ++  + K   +  AR +F+++   + ++WN ++  Y+  GF 
Sbjct: 185 HCAVVKYGYSGNIDLETSIVDVYGKCQVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFN 244

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EAV +F ++    V  L      +++V+ AC+   ALE GK IH+  +   +  D+V+ 
Sbjct: 245 DEAVVMFFKMLELNVRPLN---HTVSSVMLACSRSLALEVGKVIHAIAVKISVVADTVVS 301

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +S+ ++Y KC    SA +V +  K  D    ++ +SGYA  G   +AR +FD   + + V
Sbjct: 302 TSIFDMYVKCDRLESARRVFDQTKSKDLKSWTSAMSGYAMSGITREARELFDLMPERNIV 361

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN+M+ GY+  +E  +AL     MR+     D  TL  +L+ CS +  ++ GKQ HG  
Sbjct: 362 SWNAMLGGYVRAHEWDDALDFLTLMRKEIEDIDNVTLVWILNVCSGISDVQMGKQAHGFI 421

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            + G   +VIVA+ALLD Y K                               CG ++ A 
Sbjct: 422 YRHGYDMNVIVANALLDMYGK-------------------------------CGTLQSAN 450

Query: 391 HIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             FR M   +  +SWN+++ G+++ G   +AL  F  M +++ +  K++LA++++ CANI
Sbjct: 451 IWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM-QMEAKPSKYTLATLLAGCANI 509

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +L LG+ +   +   G + D +I  ++VD Y KC
Sbjct: 510 PALNLGKAIHGFLIRNGYNIDVVIRGAMVDMYSKC 544



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 195/404 (48%), Gaps = 34/404 (8%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
            L    P    F  N  I  + K G +  AR LF  MP R+  +WN++I    +NG + E
Sbjct: 86  HLVTFSPLPPSFLLNRAIEAYGKCGCVDDARELFEQMPERDGGSWNAVITACAQNGVSDE 145

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
             R+F  +N D V   +      A V+ +C  +  L    Q+H  ++  G   +  L +S
Sbjct: 146 VFRMFHRMNRDGVRATETS---FAGVLKSCGLVLDLRLLMQLHCAVVKYGYSGNIDLETS 202

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           +V++YGKC       QV                        M+DARRVFD   + S V W
Sbjct: 203 IVDVYGKC-------QV------------------------MSDARRVFDEIVNPSDVSW 231

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N ++  Y+    + EA+++F KM    V     T++SV+ ACS    LE GK +H  A K
Sbjct: 232 NVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVK 291

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           + V+ D +V++++ D Y K      A ++F + K  D     + ++ Y+  G   +A+ +
Sbjct: 292 ISVVADTVVSTSIFDMYVKCDRLESARRVFDQTKSKDLKSWTSAMSGYAMSGITREAREL 351

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP ++++SWN+M+ G  +     +ALD    M K    +D  +L  +++ C+ IS +
Sbjct: 352 FDLMPERNIVSWNAMLGGYVRAHEWDDALDFLTLMRKEIEDIDNVTLVWILNVCSGISDV 411

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++G+Q    +   G D + I++ +L+D Y KCG ++    +  Q
Sbjct: 412 QMGKQAHGFIYRHGYDMNVIVANALLDMYGKCGTLQSANIWFRQ 455



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 215/489 (43%), Gaps = 98/489 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ +C+   ++ VGK +H   +K  ++  T+ ++  +  MY++C     A  +FD+ 
Sbjct: 266 VSSVMLACSRSLALEVGKVIHAIAVKISVVADTV-VSTSIFDMYVKCDRLESARRVFDQT 324

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                               K K L+           SW   +SG+A +G  + AR LF+
Sbjct: 325 --------------------KSKDLK-----------SWTSAMSGYAMSGITREARELFD 353

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP RN ++WN+M+  YVR     +A+     +  ++ +    D   L  ++  C+ ++ 
Sbjct: 354 LMPERNIVSWNAMLGGYVRAHEWDDALDFLTLMRKEIED---IDNVTLVWILNVCSGISD 410

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           ++ GKQ H  I  +G D + ++ ++L+++YGKCG   SAN     M E  D         
Sbjct: 411 VQMGKQAHGFIYRHGYDMNVIVANALLDMYGKCGTLQSANIWFRQMSELRD--------- 461

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                                 V WN++++G        +AL  F  M+         TL
Sbjct: 462 ---------------------EVSWNALLTGVARVGRSEQALSFFEGMQMEAK-PSKYTL 499

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A++L+ C+++  L  GK +HG   + G   DV++  A++D YSK       C+ F     
Sbjct: 500 ATLLAGCANIPALNLGKAIHGFLIRNGYNIDVVIRGAMVDMYSK-------CRCF----- 547

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                              + A  +F+    + LI WNS+I G  +NG   E  +LF  +
Sbjct: 548 -------------------DYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLL 588

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGF 486
               ++ D  + ++++ AC     +ELG Q F+ ++   L   QI     +V+ YCK G 
Sbjct: 589 EDEGVKPDHVTFSAILQACIREGHVELGFQYFSSMSTKYLILPQIEHYDCMVELYCKYGC 648

Query: 487 IKMDEYYLM 495
           ++  E +L+
Sbjct: 649 LRQLEEFLL 657


>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 472

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 226/481 (46%), Gaps = 74/481 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRL-LQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           KQ+H   +   + + TL +   +        GN   A L+F+++   N F +N++I G+ 
Sbjct: 5   KQIHAQIILNNLTDQTLTLGKLVSFCAVSDAGNLDYAHLVFNQISIPNKFMYNSLIRGYC 64

Query: 84  KLGHKEKSL----QLFNVMPQKNDFSW--------------------------------- 106
                 KS+    QL +     N+F++                                 
Sbjct: 65  NSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLGFASLIC 124

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LI+ +   G ++ AR +F+DM  R+ ++WNSMI  Y + G+ +E   LFKE+    
Sbjct: 125 VQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIG 184

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            E    D F L  ++  C+    +  G+ +H +I + G+  D V  ++L+++Y KCG   
Sbjct: 185 TE---ADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALV 241

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V   M   +    +++I+ YA  G +  AR+ FD+  + + V WNSMIS Y+   +
Sbjct: 242 LAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQ 301

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL LFH+M    V+ + +TL SVLSAC  +G L  GK++H + C             
Sbjct: 302 CREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTS---------- 351

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
                                 +Y   L N++I +Y+ CG +  A  +F  MPNK+L+SW
Sbjct: 352 ---------------------SMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSW 390

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N +I  L+ +G  +EA++LF  M    +  D+ +   ++SAC++   ++ G   F +++ 
Sbjct: 391 NVIIGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLLSACSHSGLVDSGLYYFDKMSS 450

Query: 465 I 465
           I
Sbjct: 451 I 451



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 179/375 (47%), Gaps = 36/375 (9%)

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           AG L  A  +FN +   N   +NS+I  Y  +    +++ L+++L   +   L  + F  
Sbjct: 35  AGNLDYAHLVFNQISIPNKFMYNSLIRGYCNSNSPIKSMFLYRQL---IDSGLSPNEFTF 91

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             V+ ACA  +A      +H H     L F S++                          
Sbjct: 92  PFVLKACASKSAHWMSMIVHGH--AQKLGFASLI-------------------------- 123

Query: 236 PDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
               C+ + LI+ Y  CG +  AR++FD  ++ S V WNSMI GY       E  LLF +
Sbjct: 124 ----CVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKE 179

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           MR  G   D  TL ++L  CS    +  G+ VH +    G+  D++  +AL+D Y+K G 
Sbjct: 180 MREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGA 239

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A ++F ++   + +   +MIT Y+  G +E A+  F  MP K+++SWNSMI    Q 
Sbjct: 240 LVLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQG 299

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G   EALDLF  M+   +  ++ +L SV+SAC  I  L +G+++   +          + 
Sbjct: 300 GQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLC 359

Query: 475 TSLVDFYCKCGFIKM 489
            SL+D Y KCG +++
Sbjct: 360 NSLIDMYAKCGALRI 374



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 134/309 (43%), Gaps = 60/309 (19%)

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           ++  KQIH+ I++N L   ++    LV+                       FC       
Sbjct: 1   MKQSKQIHAQIILNNLTDQTLTLGKLVS-----------------------FC------A 31

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            ++ G ++ A  VF++ +  +  M+NS+I GY ++N   +++ L+ ++  +G+  +  T 
Sbjct: 32  VSDAGNLDYAHLVFNQISIPNKFMYNSLIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTF 91

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             VL AC+S         VHGHA K+G    + V                          
Sbjct: 92  PFVLKACASKSAHWMSMIVHGHAQKLGFASLICVQ------------------------- 126

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                 N +I  Y +CG I  A+ +F  M  +SL+SWNSMI G S+ G   E   LF  M
Sbjct: 127 ------NGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEM 180

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            ++    D F+L +++  C+    + LG  V   + I G+  D +   +L+D Y KCG +
Sbjct: 181 REIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGAL 240

Query: 488 KMDEYYLMQ 496
            + E    Q
Sbjct: 241 VLAERVFQQ 249


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 216/421 (51%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  +++ G  + + ++F+ M  ++  SW  L+  +A+ G+L+ AR + ++MP RN +
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W +++  + + G A+EAV L+ ++   L +  + +    ++V+GACA L  L  G++IH
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQM---LADGCRPNISCFSSVLGACASLQDLRSGRKIH 401

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L      +  + S+L+++Y KC     A  +   + + +  C ++LISGY+N  KM 
Sbjct: 402 NQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMV 461

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      T +SVL AC+
Sbjct: 462 EAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACA 521

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           SL  LE GK VH    K+G+ + + V +AL D Y+K                        
Sbjct: 522 SLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS----------------------- 558

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF +M    +  +
Sbjct: 559 --------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPN 610

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F  +   G+       T +VD   + G +   E  L+
Sbjct: 611 EQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLL 670

Query: 496 Q 496
           +
Sbjct: 671 K 671



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/420 (30%), Positives = 224/420 (53%), Gaps = 16/420 (3%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+++ M+   +K G    + +LF+ MP+++  S+  ++    K G ++ A  L+   P  
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA-----DLAA 187
           +   + +MI  +V N   ++A+ +F E+ S  V     +   L +VI AC      DLA 
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSP---NEITLVSVIKACIGAGEFDLAM 265

Query: 188 LEYGKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
              G  + S++L      D  LG  +SL+ LY + GD ++A ++ + M+  D    +AL+
Sbjct: 266 SIVGLAMKSNLL------DKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALL 319

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
             YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S
Sbjct: 320 DVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNIS 379

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
             +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L
Sbjct: 380 CFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSL 439

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
              + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F 
Sbjct: 440 PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFH 499

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M        + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G
Sbjct: 500 AMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSG 559



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 194 IHSHILVNGLDFD----------------------------SVLGSS-------LVNLYG 218
           IH+H LV+GL  D                            SV+G++       +V  + 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K GD  SA ++ + M E      + ++      G + DA  ++ +    S   + +MI+G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID- 337
           ++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  ++D 
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +   MP
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  G +
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  +   +   ++  +S++L+D YCKC
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKC 426



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 173/423 (40%), Gaps = 101/423 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C +   +  G+++H   LK    N+   +++ L+ MY +C    DA ++F
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVF-VSSALIDMYCKCKQLPDAQMIF 436

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
             +                               PQKN   WN LISG++   ++  A  
Sbjct: 437 YSL-------------------------------PQKNIVCWNSLISGYSNNSKMVEAEE 465

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RN  +WNS+I  Y +N   R+ +   K  ++ L           ++V+ ACA 
Sbjct: 466 LFKKMPARNVASWNSIISGYAQN---RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +LE GK +H+ I+  G+     +G++L ++Y K GD                      
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGD---------------------- 560

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                    ++ ++RVF      + V W +MI G   N    E++LLF  M   G+  + 
Sbjct: 561 ---------LDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNE 611

Query: 305 STLASVLSACSSLGFLEHG-------------KQVHGHACKVGVI---------DDVIVA 342
            T  ++L ACS  G +EH               +   + C V V+         +D+++ 
Sbjct: 612 QTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLK 671

Query: 343 ----------SALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                     +ALL   + Y  + M   A K   EL   +T     +  +Y+SCG+ +DA
Sbjct: 672 IESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDA 731

Query: 390 KHI 392
             +
Sbjct: 732 AEM 734



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 18/233 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  S+ +GK +H   +K GI  S   +   L  MY + G+   +  +F EMP+R
Sbjct: 516 VLLACASLCSLEMGKMVHAKIIKLGIKESIF-VGTALSDMYAKSGDLDSSKRVFYEMPKR 574

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           N  +W AMI+G  + G  E+S+ LF  M       N+ ++  ++   + +G ++ A   F
Sbjct: 575 NDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYF 634

Query: 127 NDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             M        A  +  M+    R G   EA  L  ++ S      + +A   A ++ AC
Sbjct: 635 EMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES------KSEANSWAALLSAC 688

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
                 E G++    +    LD D+  G  L+ N+Y  CG +  A ++  +MK
Sbjct: 689 NIYRNKEMGERAAKRL--QELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 48/202 (23%)

Query: 326 VHGHACKVGVIDDVIVASALL-----------------DTYSKRGMPS------------ 356
           +H HA   G+  D  VAS LL                 D  S  G  S            
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 357 ------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                  A +LF  +     +   TM+      G + DA  ++R  P  S+  + +MI G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---- 466
              N  P +AL +F  M    +  ++ +L SVI AC      +L       ++I+G    
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLA------MSIVGLAMK 273

Query: 467 ---LDSDQIISTSLVDFYCKCG 485
              LD +  +  SL+  Y + G
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKG 295


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 216/421 (51%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  +++ G  + + ++F+ M  ++  SW  L+  +A+ G+L+ AR + ++MP RN +
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W +++  + + G A+EAV L+ ++   L +  + +    ++V+GACA L  L  G++IH
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQM---LADGCRPNISCFSSVLGACASLQDLRSGRKIH 401

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L      +  + S+L+++Y KC     A  +   + + +  C ++LISGY+N  KM 
Sbjct: 402 NQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMV 461

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      T +SVL AC+
Sbjct: 462 EAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACA 521

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           SL  LE GK VH    K+G+ + + V +AL D Y+K                        
Sbjct: 522 SLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS----------------------- 558

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF +M    +  +
Sbjct: 559 --------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPN 610

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F  +   G+       T +VD   + G +   E  L+
Sbjct: 611 EQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLL 670

Query: 496 Q 496
           +
Sbjct: 671 K 671



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 223/418 (53%), Gaps = 12/418 (2%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+++ M+   +K G    + +LF+ MP+++  S+  ++    K G ++ A  L+   P  
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA-----DLAA 187
           +   + +MI  +V N   ++A+ +F E+ S  V     +   L +VI AC      DLA 
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSP---NEITLVSVIKACIGAGEFDLAM 265

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
              G  + S++L   L     + +SL+ LY + GD ++A ++ + M+  D    +AL+  
Sbjct: 266 SIVGLAMKSNLLDKNLG----VRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S  
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L  
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F  M
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                   + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSG 559



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 173/423 (40%), Gaps = 101/423 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C +   +  G+++H   LK    N+   +++ L+ MY +C    DA ++F
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVF-VSSALIDMYCKCKQLPDAQMIF 436

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
             +                               PQKN   WN LISG++   ++  A  
Sbjct: 437 YSL-------------------------------PQKNIVCWNSLISGYSNNSKMVEAEE 465

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RN  +WNS+I  Y +N   R+ +   K  ++ L           ++V+ ACA 
Sbjct: 466 LFKKMPARNVASWNSIISGYAQN---RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +LE GK +H+ I+  G+     +G++L ++Y K GD +S                   
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDS------------------- 563

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                       ++RVF      + V W +MI G   N    E++LLF  M   G+  + 
Sbjct: 564 ------------SKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNE 611

Query: 305 STLASVLSACSSLGFLEHG-------------KQVHGHACKVGVI---------DDVIVA 342
            T  ++L ACS  G +EH               +   + C V V+         +D+++ 
Sbjct: 612 QTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLK 671

Query: 343 ----------SALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                     +ALL   + Y  + M   A K   EL   +T     +  +Y+SCG+ +DA
Sbjct: 672 IESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDA 731

Query: 390 KHI 392
             +
Sbjct: 732 AEM 734



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 194 IHSHILVNGLDFD----------------------------SVLGSS-------LVNLYG 218
           IH+H LV+GL  D                            SV+G++       +V  + 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K GD  SA ++ + M E      + ++      G + DA  ++ +    S   + +MI+G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID- 337
           ++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  ++D 
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +   MP
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  G +
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  +   +   ++  +S++L+D YCKC
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKC 426



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 18/236 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+ +GK +H   +K GI  S   +   L  MY + G+   +  +F EM
Sbjct: 513 FSSVLLACASLCSLEMGKMVHAKIIKLGIKESIF-VGTALSDMYAKSGDLDSSKRVFYEM 571

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P+RN  +W AMI+G  + G  E+S+ LF  M       N+ ++  ++   + +G ++ A 
Sbjct: 572 PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM 631

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             F  M        A  +  M+    R G   EA  L  ++ S      + +A   A ++
Sbjct: 632 HYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES------KSEANSWAALL 685

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
            AC      E G++    +    LD D+  G  L+ N+Y  CG +  A ++  +MK
Sbjct: 686 SACNIYRNKEMGERAAKRL--QELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 48/202 (23%)

Query: 326 VHGHACKVGVIDDVIVASALL-----------------DTYSKRGMPS------------ 356
           +H HA   G+  D  VAS LL                 D  S  G  S            
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 357 ------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                  A +LF  +     +   TM+      G + DA  ++R  P  S+  + +MI G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---- 466
              N  P +AL +F  M    +  ++ +L SVI AC      +L       ++I+G    
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLA------MSIVGLAMK 273

Query: 467 ---LDSDQIISTSLVDFYCKCG 485
              LD +  +  SL+  Y + G
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKG 295


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 216/421 (51%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  +++ G  + + ++F+ M  ++  SW  L+  +A+ G+L+ AR + ++MP RN +
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W +++  + + G A+EAV L+ ++   L +  + +    ++V+GACA L  L  G++IH
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQM---LADGCRPNISCFSSVLGACASLQDLRSGRKIH 401

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L      +  + S+L+++Y KC     A  +   + + +  C ++LISGY+N  KM 
Sbjct: 402 NQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMV 461

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      T +SVL AC+
Sbjct: 462 EAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACA 521

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           SL  LE GK VH    K+G+ + + V +AL D Y+K                        
Sbjct: 522 SLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS----------------------- 558

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF +M    +  +
Sbjct: 559 --------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPN 610

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F  +   G+       T +VD   + G +   E  L+
Sbjct: 611 EQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLL 670

Query: 496 Q 496
           +
Sbjct: 671 K 671



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 223/418 (53%), Gaps = 12/418 (2%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+++ M+   +K G    + +LF+ MP+++  S+  ++    K G ++ A  L+   P  
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA-----DLAA 187
           +   + +MI  +V N   ++A+ +F E+ S  V     +   L +VI AC      DLA 
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSP---NEITLVSVIKACIGAGEFDLAM 265

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
              G  + S++L   L     + +SL+ LY + GD ++A ++ + M+  D    +AL+  
Sbjct: 266 SIVGLAMKSNLLDKNLG----VRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S  
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L  
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F  M
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                   + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSG 559



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 173/423 (40%), Gaps = 101/423 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C +   +  G+++H   LK    N+   +++ L+ MY +C    DA ++F
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVF-VSSALIDMYCKCKQLPDAQMIF 436

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
             +                               PQKN   WN LISG++   ++  A  
Sbjct: 437 YSL-------------------------------PQKNIVCWNSLISGYSNNSKMVEAEE 465

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RN  +WNS+I  Y +N   R+ +   K  ++ L           ++V+ ACA 
Sbjct: 466 LFKKMPARNVASWNSIISGYAQN---RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +LE GK +H+ I+  G+     +G++L ++Y K GD +S                   
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDS------------------- 563

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                       ++RVF      + V W +MI G   N    E++LLF  M   G+  + 
Sbjct: 564 ------------SKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNE 611

Query: 305 STLASVLSACSSLGFLEHG-------------KQVHGHACKVGVI---------DDVIVA 342
            T  ++L ACS  G +EH               +   + C V V+         +D+++ 
Sbjct: 612 QTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLK 671

Query: 343 ----------SALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                     +ALL   + Y  + M   A K   EL   +T     +  +Y+SCG+ +DA
Sbjct: 672 IESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDA 731

Query: 390 KHI 392
             +
Sbjct: 732 AEM 734



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 194 IHSHILVNGLDFD----------------------------SVLGSS-------LVNLYG 218
           IH+H LV+GL  D                            SV+G++       +V  + 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K GD  SA ++ + M E      + ++      G + DA  ++ +    S   + +MI+G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID- 337
           ++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  ++D 
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +   MP
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  G +
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  +   +   ++  +S++L+D YCKC
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKC 426



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 18/236 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+ +GK +H   +K GI  S   +   L  MY + G+   +  +F EM
Sbjct: 513 FSSVLLACASLCSLEMGKMVHAKIIKLGIKESIF-VGTALSDMYAKSGDLDSSKRVFYEM 571

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P+RN  +W AMI+G  + G  E+S+ LF  M       N+ ++  ++   + +G ++ A 
Sbjct: 572 PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM 631

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             F  M        A  +  M+    R G   EA  L  ++ S      + +A   A ++
Sbjct: 632 HYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES------KSEANSWAALL 685

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
            AC      E G++    +    LD D+  G  L+ N+Y  CG +  A ++  +MK
Sbjct: 686 SACNIYRNKEMGERAAKRL--QELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 93/485 (19%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           I +  L +  +++  Y R     DAL LFD M  R+  SWN+MI+G +  G+   + +LF
Sbjct: 38  IPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLF 97

Query: 96  NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
           + MP+KN  SW  +++G+ K G ++ A+ LF DM  ++  AWN+M+H Y  NG   E VR
Sbjct: 98  DEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVR 157

Query: 156 LFKEL-------------NSDLVERLQCDAFI---------------LATVIGACADLAA 187
           LF+E+               DL  + +   F+                A V+ ACA+   
Sbjct: 158 LFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVE 217

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
              G Q+H H++  G  F   +  SL+  Y                              
Sbjct: 218 FNLGVQVHGHVVKLGCFFHEFISVSLITFY------------------------------ 247

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            ANC K+  A ++F+ T   + V W ++++ Y+ NN+  +AL +F  M + G L + ST 
Sbjct: 248 -ANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTF 306

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +  L AC  L  L+ GK++H  A K+G+  DV V ++L+  Y++                
Sbjct: 307 SITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTE---------------- 350

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                          CG +  A  +FR +  K ++SWNS+IVG +Q+G  + AL  F  M
Sbjct: 351 ---------------CGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQM 395

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGF 486
            +  +  ++ +   ++SAC+    L  G   F  ++    +  +    + +VD   +CG 
Sbjct: 396 IRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCG- 454

Query: 487 IKMDE 491
            K+DE
Sbjct: 455 -KLDE 458



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           +++ AR +FD+    +  ++  MI+GY  N+   +AL LF +M     + D  +  S++ 
Sbjct: 27  RLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMS----VRDVVSWNSMIK 82

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
            C   G L    ++     +     +VI  + +++ Y K G    A +LF ++ V D   
Sbjct: 83  GCLDCGNLGMATRLFDEMPE----KNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAA 138

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N M+  Y   GR+E+   +F  MP + +ISW SMI GL  NG   EAL +F  M +  +
Sbjct: 139 WNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGV 198

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
                + A V+SACAN     LG QV   V  +G    + IS SL+ FY  C
Sbjct: 199 EPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANC 250


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 216/422 (51%), Gaps = 36/422 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  +++ G  + + ++F+ M  ++  SW  L+  +A+ G+L+ AR + ++MP RN +
Sbjct: 285 NSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNEV 344

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSD-LVERLQCDAFILATVIGACADLAALEYGKQI 194
           +W +++  + + G A+EAV L+ ++ +D     + C     ++V+GACA L  L  G++I
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISC----FSSVLGACASLQDLRSGRKI 400

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H+  L      +  + S+L+++Y KC     A  +   + + +  C ++LISGY+N  KM
Sbjct: 401 HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
            +A  +F +    +   WNS+ISGY  N +  +AL  FH M  +G      T +SVL AC
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           +SL  LE GK VH    K+G+ + + V +AL D Y+K                       
Sbjct: 521 ASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKS---------------------- 558

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
                    G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF +M    +  
Sbjct: 559 ---------GDLDSSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITP 609

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           ++ +  +++ AC++   +E     F  +   G+       T +VD   + G +   E  L
Sbjct: 610 NEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLL 669

Query: 495 MQ 496
           ++
Sbjct: 670 LK 671



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 223/418 (53%), Gaps = 12/418 (2%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+++ M+   +K G    + +LF+ MP+++  S+  ++    K G ++ A  L+   P  
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLC 208

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA-----DLAA 187
           +   + +MI  +V N   ++A+ +F E+ S  V     +   L +VI AC      DLA 
Sbjct: 209 SVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSP---NEITLVSVIKACIGAGEFDLAM 265

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
              G  + S++L   L     + +SL+ LY + GD ++A ++ + M+  D    +AL+  
Sbjct: 266 SIVGLAMKSNLLDKNLG----VRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           YA  G +  ARRV D   + + V W ++++ +       EA+ L+ +M  +G   + S  
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +SVL AC+SL  L  G+++H    K+   ++V V+SAL+D Y K     DA  +F  L  
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQ 441

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            + +  N++I+ YS+  ++ +A+ +F+ MP +++ SWNS+I G +QN   I+AL  F  M
Sbjct: 442 KNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAM 501

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                   + + +SV+ ACA++ SLE+G+ V A++  +G+     + T+L D Y K G
Sbjct: 502 LASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSG 559



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 173/423 (40%), Gaps = 101/423 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C +   +  G+++H   LK    N+   +++ L+ MY +C    DA ++F
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVF-VSSALIDMYCKCKQLPDAQMIF 436

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
             +                               PQKN   WN LISG++   ++  A  
Sbjct: 437 YSL-------------------------------PQKNIVCWNSLISGYSNNSKMVEAEE 465

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RN  +WNS+I  Y +N   R+ +   K  ++ L           ++V+ ACA 
Sbjct: 466 LFKKMPARNVASWNSIISGYAQN---RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +LE GK +H+ I+  G+     +G++L ++Y K GD +S+                  
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS------------------ 564

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                        +RVF      + V W +MI G   N    E++LLF  M   G+  + 
Sbjct: 565 -------------KRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNE 611

Query: 305 STLASVLSACSSLGFLEHG-------------KQVHGHACKVGVI---------DDVIVA 342
            T  ++L ACS  G +EH               +   + C V V+         +D+++ 
Sbjct: 612 QTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLK 671

Query: 343 ----------SALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                     +ALL   + Y  + M   A K   EL   +T     +  +Y+SCG+ +DA
Sbjct: 672 IESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDA 731

Query: 390 KHI 392
             +
Sbjct: 732 AEM 734



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 36/327 (11%)

Query: 194 IHSHILVNGLDFD----------------------------SVLGSS-------LVNLYG 218
           IH+H LV+GL  D                            SV+G++       +V  + 
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K GD  SA ++ + M E      + ++      G + DA  ++ +    S   + +MI+G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID- 337
           ++ N    +AL +FH+M   GV  +  TL SV+ AC   G  +    + G A K  ++D 
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           ++ V ++L+  Y ++G    A ++F E++V D +    ++ VY+  G +E A+ +   MP
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMP 339

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            ++ +SW +++    Q G+  EA+ L+  M     R +    +SV+ ACA++  L  G +
Sbjct: 340 ERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRK 399

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  +   +   ++  +S++L+D YCKC
Sbjct: 400 IHNQTLKMACSNNVFVSSALIDMYCKC 426



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 18/236 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +  S+ +GK +H   +K GI  S   +   L  MY + G+   +  +F EM
Sbjct: 513 FSSVLLACASLCSLEMGKMVHAKIIKLGIKESIF-VGTALSDMYAKSGDLDSSKRVFYEM 571

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P+RN  +W AMI+G  + G  E+S+ LF  M       N+ ++  ++   + +G ++ A 
Sbjct: 572 PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM 631

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             F  M        A  +  M+    R G   EA  L  ++ S      + +A   A ++
Sbjct: 632 HYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIES------KSEANSWAALL 685

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
            AC      E G++    +    LD D+  G  L+ N+Y  CG +  A ++  +MK
Sbjct: 686 SACNIYRNKEMGERAAKRL--QELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 48/202 (23%)

Query: 326 VHGHACKVGVIDDVIVASALL-----------------DTYSKRGMPS------------ 356
           +H HA   G+  D  VAS LL                 D  S  G  S            
Sbjct: 100 IHAHALVSGLTADGSVASHLLTAYAAFARAADRDGAFRDCVSVVGAASPFAYDFMVREHV 159

Query: 357 ------DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                  A +LF  +     +   TM+      G + DA  ++R  P  S+  + +MI G
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG---- 466
              N  P +AL +F  M    +  ++ +L SVI AC      +L       ++I+G    
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLA------MSIVGLAMK 273

Query: 467 ---LDSDQIISTSLVDFYCKCG 485
              LD +  +  SL+  Y + G
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKG 295


>gi|302788580|ref|XP_002976059.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
 gi|300156335|gb|EFJ22964.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
          Length = 699

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/546 (25%), Positives = 240/546 (43%), Gaps = 106/546 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+SC    S+  GK +HL  ++ G+L + + + N L+ MY +CG+   A  +FD M  R+
Sbjct: 17  LKSCVRIQSLAAGKFIHLLVIESGLL-TQISVGNALVNMYGKCGSLALAREVFDGMDHRD 75

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------------------------- 105
             SWNA+I  + + GH +++++LF  M +                               
Sbjct: 76  VISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSALEAANRIF 135

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGF 149
                           N L++ ++K G LK+A  +F  M  R + + W +MI  Y ++G+
Sbjct: 136 ALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDDVVLWTTMISVYAQDGY 195

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           +  A+ LF+++  +  E L  D F LA+ + AC     LE G++IH+ ++  G + + V+
Sbjct: 196 SEAALELFQQMEKE--EALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESELVV 253

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++LV++Y  CG                                + DA   F +    + 
Sbjct: 254 GNALVSMYANCG-------------------------------TLQDALECFQKMAQRNV 282

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN+MI+ Y+ +N D EA  +F++M+  GV  ++ T  + LS CS+    E G      
Sbjct: 283 VSWNAMIAAYVHHNCDKEAFRIFYQMQLEGVQPNSVTFVTFLSTCSTPAAFEDGLIRALE 342

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTIL---------------- 372
             K     D +V +ALL TY+K G   +  ++F  + K  D ++                
Sbjct: 343 VEKRVESLDALVGNALLHTYAKLGKLDEVQRVFQRMEKQRDDVVTWNAVIEGSVRNGEFR 402

Query: 373 -------------LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                         N ++  Y   GR+ D + +F  M  + +I+WN ++    +     E
Sbjct: 403 NALELMPQKNLGSWNGLLGAYIHVGRLADTRKLFEEMEERDVITWNMILGAYVERDMAKE 462

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           A+ LF  M       +  +  +++ ACA  +SL  G +V   +   G DS+  +  +LVD
Sbjct: 463 AVRLFRRMIAEGTEPNSITWTTMLGACAGEASLAEGRRVHELIAERGADSELFVGNALVD 522

Query: 480 FYCKCG 485
            + KC 
Sbjct: 523 MFGKCA 528



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/523 (22%), Positives = 220/523 (42%), Gaps = 109/523 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-R 69
           ++ +C    ++    ++     ++G+L+S + + N L+ MY +CG+   A ++F+ M  R
Sbjct: 118 VVSACCDPSALEAANRIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIR 177

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSW------------------ 106
            +   W  MI  + + G+ E +L+LF  M ++     + F+                   
Sbjct: 178 DDVVLWTTMISVYAQDGYSEAALELFQQMEKEEALLPDGFTLASALAACTGPEMLEEGRE 237

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N L+S +A  G L+ A   F  M +RN ++WN+MI  YV +  
Sbjct: 238 IHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNC 297

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG--KQIHSHILVNGLDFDS 207
            +EA R+F ++    +E +Q ++    T +  C+  AA E G  + +     V  LD  +
Sbjct: 298 DKEAFRIFYQMQ---LEGVQPNSVTFVTFLSTCSTPAAFEDGLIRALEVEKRVESLD--A 352

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMM-KEPDDFC-------------------------- 240
           ++G++L++ Y K G  +   +V   M K+ DD                            
Sbjct: 353 LVGNALLHTYAKLGKLDEVQRVFQRMEKQRDDVVTWNAVIEGSVRNGEFRNALELMPQKN 412

Query: 241 ---LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
               + L+  Y + G++ D R++F+   +   + WN ++  Y+  +   EA+ LF +M  
Sbjct: 413 LGSWNGLLGAYIHVGRLADTRKLFEEMEERDVITWNMILGAYVERDMAKEAVRLFRRMIA 472

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
            G   ++ T  ++L AC+    L  G++VH    + G   ++ V +AL+D + K      
Sbjct: 473 EGTEPNSITWTTMLGACAGEASLAEGRRVHELIAERGADSELFVGNALVDMFGK------ 526

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                                    C  +  A+  F  +  K   SWN ++  L+QNG  
Sbjct: 527 -------------------------CASLGGARQAFERIRAKDASSWNVLVAALAQNGDA 561

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            EAL  F  M +  ++    +   V  AC++   LE  + +FA
Sbjct: 562 EEALKQFLRMQREGIKPTDVTFIVVFWACSHAGRLEQAKTIFA 604



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 64/315 (20%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T + +C  + +L  GK IH  ++ +GL     +G++LVN+YGK                 
Sbjct: 15  TALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGK----------------- 57

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                         CG +  AR VFD       + WN++I+ Y       EA+ LF  M+
Sbjct: 58  --------------CGSLALAREVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQ 103

Query: 297 RNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            +G +E D+ T  +V+SAC     LE   ++     + G++D                  
Sbjct: 104 EDGRIEPDSVTFVAVVSACCDPSALEAANRIFALVEERGLLDS----------------- 146

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQN 414
                        D +L N ++ +YS CG ++ A  +F  M  +  ++ W +MI   +Q+
Sbjct: 147 -------------DVVLGNALVNMYSKCGSLKSATMVFERMKIRDDVVLWTTMISVYAQD 193

Query: 415 GSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           G    AL+LF  M K + L  D F+LAS ++AC     LE G ++ A V   G +S+ ++
Sbjct: 194 GYSEAALELFQQMEKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESELVV 253

Query: 474 STSLVDFYCKCGFIK 488
             +LV  Y  CG ++
Sbjct: 254 GNALVSMYANCGTLQ 268



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 31/192 (16%)

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           +G+L D  +  + L +C  +  L  GK +H    + G++  + V +AL++ Y K G  + 
Sbjct: 4   HGLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLAL 63

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           A ++F  +   D I  N +IT Y+  G  ++A  +F+ M                Q    
Sbjct: 64  AREVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAM----------------QEDGR 107

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTS 476
           IE               D  +  +V+SAC + S+LE   ++FA V   G LDSD ++  +
Sbjct: 108 IEP--------------DSVTFVAVVSACCDPSALEAANRIFALVEERGLLDSDVVLGNA 153

Query: 477 LVDFYCKCGFIK 488
           LV+ Y KCG +K
Sbjct: 154 LVNMYSKCGSLK 165


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/529 (28%), Positives = 238/529 (44%), Gaps = 106/529 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL       S++  +Q+H H +K G  +STL ++N LL  Y +  +   A  LF+++
Sbjct: 201 LATLLSGFTEFDSVNEVRQVHSHVIKLG-YDSTLVVSNSLLDSYCKTRSLGLAFQLFNDI 259

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P R+  ++NA++ G+ K G   +++ LF  M +                           
Sbjct: 260 PERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQ 319

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K +F WN+ ++      ++K   +  A  LF +MP  + I++N ++ CY  NG
Sbjct: 320 QVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNG 379

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             +E++ LFKEL     +R     F  AT++   A    L+ G+QIHS  +V     + +
Sbjct: 380 RVKESLELFKELQFTGFDRRN---FPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEIL 436

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G+SLV++Y K                               CG+  +A R+F      S
Sbjct: 437 VGNSLVDMYAK-------------------------------CGEFGEANRIFSDLAIQS 465

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV W +MIS Y+      + L LF +M+R  +  DA+T AS++ AC+SL  L  GKQ+H 
Sbjct: 466 SVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHS 525

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H    G I +V   SAL+D Y+K G   DA ++F E+ V +++                 
Sbjct: 526 HIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSV----------------- 568

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                         SWN++I   +QNG     L LF  M +  L+ D  SL S++ AC++
Sbjct: 569 --------------SWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSH 614

Query: 449 ISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
              +E G Q F  +T I  L   +    S +D  C+ G     E  + Q
Sbjct: 615 CGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQ 663



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 197/415 (47%), Gaps = 65/415 (15%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N +  N +++ F++ G    + +LF+ MP KN FS N +I G+ K+G L  ARTLF+ M 
Sbjct: 100 NTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMF 159

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           +R A+ W  +I  Y +N   REA  LF E+    ++    D   LAT++    +  ++  
Sbjct: 160 QRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDP---DHVSLATLLSGFTEFDSVNE 216

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            +Q+HSH++  G D   V+ +SL++ Y K      A Q+ N + E D    +AL++GY+ 
Sbjct: 217 VRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSK 276

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G        F+R                       EA+ LF KM+  G      T A++
Sbjct: 277 EG--------FNR-----------------------EAINLFFKMQEVGYRPTEFTFAAI 305

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L+A   L  +E G+QVHG   K   + +V VA+ALLD YSK     +A KLF E+   D 
Sbjct: 306 LTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDG 365

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           I  N ++T Y+  GR++                               E+L+LF  +   
Sbjct: 366 ISYNVLVTCYAWNGRVK-------------------------------ESLELFKELQFT 394

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                 F  A+++S  A   +L++G Q+ ++  +    S+ ++  SLVD Y KCG
Sbjct: 395 GFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCG 449



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 143/291 (49%), Gaps = 31/291 (10%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
            + + I+  G + ++   + LV  + + GD N A ++ + M   + F  + +I GY   G
Sbjct: 87  HVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSG 146

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +++AR +FD     ++V W  +I GY  NN+  EA  LF +M R+G+  D  +LA++LS
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLS 206

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
             +    +   +QVH H  K+G    ++V+++LLD+Y K      A +LF+++   D++ 
Sbjct: 207 GFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVT 266

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N ++T                               G S+ G   EA++LF  M ++  
Sbjct: 267 FNALLT-------------------------------GYSKEGFNREAINLFFKMQEVGY 295

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           R  +F+ A++++A   +  +E G+QV   V       +  ++ +L+DFY K
Sbjct: 296 RPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSK 346



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 16/236 (6%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A ++++C +  S+ +GKQLH H +  G +++     + L+ MY +CG+  DAL +F EMP
Sbjct: 505 ASIVRACASLASLTLGKQLHSHIIGSGYISNVFS-GSALVDMYAKCGSIKDALQMFQEMP 563

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTART 124
            RN  SWNA+I  + + G  + +L+LF  M     Q +  S   ++   +  G ++    
Sbjct: 564 VRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQ 623

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            F+ M R   +      + S I    R G   EA +L  ++        + D  + ++V+
Sbjct: 624 YFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMP------FEPDEIMWSSVL 677

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            +C      E  K+  + +    +  D+    ++ N+Y   G++++  +V   M+E
Sbjct: 678 NSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRE 733


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 213/462 (46%), Gaps = 105/462 (22%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           +S + ++  LL MY + G   DA L+FDEMP RN  SW AM+ G+      +++ +LF  
Sbjct: 150 SSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQ 209

Query: 98  M----P-QKNDFSW-----------------------------------NMLISGFAKAG 117
           M    P  KN+F                                     N L++ +AKAG
Sbjct: 210 MLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAG 269

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            +  A  +F     RN+I W++MI  Y +NG A  AVR+F ++++      +   F L  
Sbjct: 270 CMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTE---FTLVG 326

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           V+ AC+D+  L  GKQ H  ++  G +         V +Y K                  
Sbjct: 327 VLNACSDVGTLMEGKQAHGLMVKLGFE---------VQVYVK------------------ 359

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
               SAL+  YA CG + DA+  F++ ++   V+W +M++G++ N E  +AL+L+ +M +
Sbjct: 360 ----SALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDK 415

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
            GV  +  T+ S+L AC+ L  LE GKQ+H    K G      V SAL            
Sbjct: 416 EGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSAL------------ 463

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                               T+YS CG +ED   +FR MP++ +I+WNS+I G SQNG  
Sbjct: 464 -------------------STMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRG 504

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            +A++LF  M       D  +  +V+ AC+++  ++ G   F
Sbjct: 505 NDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYF 546



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 213/508 (41%), Gaps = 113/508 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMY---MRCGNPTDALLLFDEMPR--RNCFSWNAM 78
           G+ LH   LK G  +S  P++N L+  Y    R   P  A  +F ++P   R+  SWN++
Sbjct: 31  GEALHAWALKSGS-SSHAPVSNSLITFYSSFPRLFLPA-AFAVFADIPAAARDVASWNSL 88

Query: 79  I------EGFMKLGHKEKSLQLFNVMPQK------------------------------- 101
           +           L H    L    ++P                                 
Sbjct: 89  LNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPS 148

Query: 102 ---NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
              N F    L++ + K G +  A+ +F++MP RN ++W +M+  Y     ++EA  LF+
Sbjct: 149 ASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFR 208

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLY 217
           ++  +    L  + F+   V+ A +    L  G Q+H  ++ +G+  F SV  S      
Sbjct: 209 QMLGEC--PLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENS------ 260

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                                     L++ YA  G M+ A  VF+ + + +S+ W++MI+
Sbjct: 261 --------------------------LVTMYAKAGCMDAAFHVFESSKERNSITWSAMIT 294

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  N     A+ +F +M   G      TL  VL+ACS +G L  GKQ HG   K+G   
Sbjct: 295 GYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEV 354

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            V V SAL+D Y+K G   DA + F++    D +L   M+T                   
Sbjct: 355 QVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVT------------------- 395

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
                       G  QNG   +AL L+  M+K  +  +  ++ S++ ACA +++LE G+Q
Sbjct: 396 ------------GHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQ 443

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  ++   G      + ++L   Y KCG
Sbjct: 444 LHTQILKFGFGLGASVGSALSTMYSKCG 471



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 171/397 (43%), Gaps = 75/397 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L + +    + +G Q+H   +K G++   + + N L+ MY + G    A  +F+    R
Sbjct: 226 VLSAISVPLGLPMGVQVHGLVVKDGMVG-FVSVENSLVTMYAKAGCMDAAFHVFESSKER 284

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW-------------------- 106
           N  +W+AMI G+ + G+ E ++++F+ M        +F+                     
Sbjct: 285 NSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAH 344

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + L+  +AK G +  A+  FN     + + W +M+  +V+NG   
Sbjct: 345 GLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFE 404

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ L+  ++    E +  +   + +++ ACA LAALE GKQ+H+ IL  G    + +GS
Sbjct: 405 QALMLYARMDK---EGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGS 461

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L  +Y K                               CG + D   VF R      + 
Sbjct: 462 ALSTMYSK-------------------------------CGNLEDGMVVFRRMPHRDVIA 490

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNS+ISG+  N    +A+ LF +M+  G   D  T  +VL ACS +G ++ G        
Sbjct: 491 WNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMI 550

Query: 332 K-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           K  G+   +   + ++D  S+ GM S+A      + +
Sbjct: 551 KDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESITI 587



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 32/250 (12%)

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F  +AL++ Y   G + DA+ VFD     + V W +M++GY +     EA  LF +M   
Sbjct: 154 FVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGE 213

Query: 299 GVLEDASTLAS-VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
             L     +A+ VLSA S    L  G QVHG   K G++  V V                
Sbjct: 214 CPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVE--------------- 258

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                           N+++T+Y+  G ++ A H+F +   ++ I+W++MI G SQNG+ 
Sbjct: 259 ----------------NSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNA 302

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
             A+ +F  M+       +F+L  V++AC+++ +L  G+Q    +  +G +    + ++L
Sbjct: 303 ESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSAL 362

Query: 478 VDFYCKCGFI 487
           VD Y KCG I
Sbjct: 363 VDMYAKCGCI 372



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 27/241 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +  LL++C    ++  GKQLH   LK G  L ++  + + L  MY +CGN  D +++F  
Sbjct: 425 ITSLLRACAGLAALEPGKQLHTQILKFGFGLGAS--VGSALSTMYSKCGNLEDGMVVFRR 482

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTA 122
           MP R+  +WN++I GF + G    ++ LF  M       +  ++  ++   +  G +   
Sbjct: 483 MPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRG 542

Query: 123 RTLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AF 173
            T F  M       PR +  A   M+    R G   EA         D +E +  D    
Sbjct: 543 WTYFRSMIKDYGLTPRLDHYA--CMVDILSRAGMLSEA--------KDFIESITIDHGTC 592

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           +   V+GAC  L   + G      ++  G   DS     L N+Y     +N   +V  +M
Sbjct: 593 LWRIVLGACRSLRDFDVGAYAGEKLMDLGTG-DSAAYILLSNIYAAQRKWNDVERVRYLM 651

Query: 234 K 234
           K
Sbjct: 652 K 652


>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
          Length = 805

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/565 (27%), Positives = 246/565 (43%), Gaps = 118/565 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LK G   +    I  +LL  Y +C     A  LF  +
Sbjct: 52  GEILQGCVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRL 111

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKN------------DFSW--- 106
             RN FSW A+I    ++G  E +L  F       V+P                +SW   
Sbjct: 112 RVRNVFSWAAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGR 171

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + L   + K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 172 GVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQNG 231

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  ++  + +E  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 232 MNEEAIRLLSDMRKEGIEPTR---VTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNI 288

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G                                +  A  +FDR     
Sbjct: 289 LGTSILNFYCKVG-------------------------------LIEYAEMIFDRIIGKD 317

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN +ISGY+      +A+ +   MR   +  D+ TL++++SA +    L  GK+V  
Sbjct: 318 IVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQC 377

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
           ++ +     ++++AS+ +D Y+K G   DA K+F      D IL NT++  Y+  G    
Sbjct: 378 YSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGE 437

Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
                                          ++++AK +F  M      PN  LISW +M
Sbjct: 438 ALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPN--LISWTTM 495

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + G  QNG   EA+     M +  LR + F+++  +SAC ++ SL  G  +   +     
Sbjct: 496 MNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQ 555

Query: 468 DSDQI-ISTSLVDFYCKCGFIKMDE 491
            S  +   TSLVD Y KCG I   E
Sbjct: 556 HSSSVSFETSLVDLYAKCGDINQAE 580



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 244/506 (48%), Gaps = 90/506 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C   H    G+ +H + LK G L+  + +A+ L  MY +CG   DA ++FDE+P RN 
Sbjct: 159 KACGALHWSWFGRGVHGYVLKAG-LHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNV 217

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
            +WNA++ G+++ G  E++++L + M ++               S NM            
Sbjct: 218 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAI 277

Query: 109 -LISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
            +++G              + K G ++ A  +F+ +  ++ + WN +I  YV+ G   +A
Sbjct: 278 AIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDA 337

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + K +    +E L+ D+  L+T++ A A    L  GK++  + + +  + + VL SS 
Sbjct: 338 MYMCKLMR---LENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASST 394

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------------ 261
           V++Y KCG    A +V     E D    + L++ YA+ G   +A ++F            
Sbjct: 395 VDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNI 454

Query: 262 ------------DRTTDTSSVM---------------WNSMISGYISNNEDTEALLLFHK 294
                       +   D +  M               W +M++G++ N    EA++   K
Sbjct: 455 ITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEEAIIFLRK 514

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRG 353
           M+ +G+  +A T++  LSAC+ L  L  G+ +HG+  +       V   ++L+D Y+K G
Sbjct: 515 MQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHSSSVSFETSLVDLYAKCG 574

Query: 354 MPSDACKLFSELKVYDTILL-NTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMI 408
             + A K+F   K+YD + L N MI+ Y+  G ++++  ++R + + ++    I++ S++
Sbjct: 575 DINQAEKVFGN-KLYDELPLHNAMISAYALYGNVKESITLYRRLEDMAMKPDNITFTSLL 633

Query: 409 VGLSQNGSPIEALDLFCNM-NKLDLR 433
              +  G  ++A+++F  M +K D++
Sbjct: 634 YACTHAGDIVQAINIFTEMVSKHDMK 659


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 215/462 (46%), Gaps = 65/462 (14%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q H   LK G    T  ++N L+ +Y RC +    L                        
Sbjct: 170 QFHAAALKSGAGYVT-SVSNALVSVYSRCASSPSLL------------------------ 204

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCY 144
                + ++F+ +P+K++ SW  +++G+ K G     + L   M      +A+N+MI  Y
Sbjct: 205 ---HSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGY 261

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V  G  +EA+ + + + S  +E    D F   +VI ACA+   L+ GKQ+H+++L    D
Sbjct: 262 VNCGLYQEALEMVRRMVSSGIE---LDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-D 317

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
           F     +SLV LY KCG FN A  +   M   D    +AL+SGY + G + +A+ +F   
Sbjct: 318 FSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            + + + W  MISG   N    E L LF  M+R G        +  + +C+ LG   +G+
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q H    K+G  D  + A                               N +IT+Y+ CG
Sbjct: 438 QFHAQLVKIG-FDSSLSAG------------------------------NALITMYAKCG 466

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            +E+A+ +FRTMP    +SWN++I  L Q+G  +EA+D++  M K  +R D+ +  +V++
Sbjct: 467 VVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLT 526

Query: 445 ACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           AC++   ++ G + F  + T+  +         L+D  C+ G
Sbjct: 527 ACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSG 568



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 215/421 (51%), Gaps = 12/421 (2%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP--RRN 133
           N +I+ + K    + + QLF+ + + +  +   ++SG+  +G++  AR++F + P   R+
Sbjct: 53  NRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRD 112

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-K 192
            + +N+MI  +  N     A+ LF ++     E  + D F  A+V+   A +   E    
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKH---EGFKPDDFTYASVLAGLALVVDDEKQCV 169

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGD----FNSANQVLNMMKEPDDFCLSALISGY 248
           Q H+  L +G  + + + ++LV++Y +C       +SA +V + + E D+   + +++GY
Sbjct: 170 QFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGY 229

Query: 249 ANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              G  +  + +     +    V +N+MISGY++     EAL +  +M  +G+  D  T 
Sbjct: 230 VKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTY 289

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SV+ AC++   L+ GKQVH +  +          ++L+  Y K G  ++A  +F ++  
Sbjct: 290 PSVIRACANARLLQLGKQVHAYVLRREDFS-FHFDNSLVTLYYKCGKFNEARAIFEKMPA 348

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D +  N +++ Y S G I +AK IF+ M  K+++SW  MI GL++NG   E L LF  M
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCM 408

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +       ++ +  I +CA + +   G+Q  A++  IG DS      +L+  Y KCG +
Sbjct: 409 KREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVV 468

Query: 488 K 488
           +
Sbjct: 469 E 469



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 158/307 (51%), Gaps = 9/307 (2%)

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           +L+  + +H +I+  G    + + + L+++Y K  + + A Q+ + + EPD    + ++S
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 247 GYANCGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           GY   G +  AR VF+ T  +   +VM+N+MI+G+  NN+   A+ LF KM+  G   D 
Sbjct: 89  GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148

Query: 305 STLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSK-RGMPS---DAC 359
            T ASVL+  + +   E    Q H  A K G      V++AL+  YS+    PS    A 
Sbjct: 149 FTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSAR 208

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPI 418
           K+F ++   D     TM+T Y   G  +  K + + M  N  L+++N+MI G    G   
Sbjct: 209 KVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQ 268

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           EAL++   M    + +D+F+  SVI ACAN   L+LG+QV A V +   D       SLV
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYV-LRREDFSFHFDNSLV 327

Query: 479 DFYCKCG 485
             Y KCG
Sbjct: 328 TLYYKCG 334



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 67/315 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     + +GKQ+H + L++   + +    N L+ +Y +CG   +A  +F++MP +
Sbjct: 292 VIRACANARLLQLGKQVHAYVLRRE--DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK 349

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWNA++ G++  GH  ++  +F  M +KN  SW ++ISG A+               
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAE--------------- 394

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                           NGF  E ++LF  +  +  E   CD +  +  I +CA L A   
Sbjct: 395 ----------------NGFGEEGLKLFSCMKREGFE--PCD-YAFSGAIKSCAVLGAYCN 435

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q H+ ++  G D     G++L+ +Y KCG    A QV   M      CL         
Sbjct: 436 GQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMP-----CL--------- 481

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                             SV WN++I+    +    EA+ ++ +M + G+  D  T  +V
Sbjct: 482 -----------------DSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTV 524

Query: 311 LSACSSLGFLEHGKQ 325
           L+ACS  G ++ G++
Sbjct: 525 LTACSHAGLVDQGRK 539


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 235/522 (45%), Gaps = 109/522 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C     +  G QLH   ++ G  +  + +   L+  Y + GB   A L+FD++
Sbjct: 40  LASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVGTSLIDFYSKNGBIEVARLVFDQL 98

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS---------------- 105
             +   +W  +I G+ K G    SL+LF      NV+P +   S                
Sbjct: 99  LEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 158

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N+LI  + K   +K  R LF+ M  +N I+W +MI  Y++N 
Sbjct: 159 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 218

Query: 149 FAREAVRLFKELNSDLVERL--QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           F  EA++LF E+N     RL  + D F   +V+ +C  L ALE G+Q+H++ +   L+ +
Sbjct: 219 FDWEAMKLFGEMN-----RLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESN 273

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + + L+++Y K      A +V ++M E +    +A+I GY++  K+            
Sbjct: 274 EFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKL------------ 321

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
                              +EAL LFH+MR         T  S+L   +SL  LE  KQ+
Sbjct: 322 -------------------SEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI 362

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG   K GV  D+   SAL+D YSK     DA  +F E+   D ++              
Sbjct: 363 HGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVV-------------- 408

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                            WN+M  G +Q+    EAL L+  +     + ++F+ A++I+A 
Sbjct: 409 -----------------WNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAA 451

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +N++SL  G+Q   ++  +GLD    ++ +LVD Y KCG I+
Sbjct: 452 SNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIE 493



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 210/443 (47%), Gaps = 74/443 (16%)

Query: 55  GNPTDALLLFDEMPRR-----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFS 105
           G   +AL++F ++ R+     N F   ++I    +LG  EK  QL   + +    ++ + 
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
              LI  ++K G+++ AR +F+ +  + A+ W ++I  Y + G +  ++ LF ++     
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRET-- 132

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             +  D +++++V+ AC+ L  LE GKQIH+++L  G + D     S+VN+         
Sbjct: 133 -NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDV----SVVNV--------- 178

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                             LI  Y  C ++   R++FD+    + + W +MISGY+ N+ D
Sbjct: 179 ------------------LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFD 220

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA+ LF +M R G   D     SVL++C SL  LE G+QVH +  K  +  +  V + L
Sbjct: 221 WEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGL 280

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K  +                               + DAK +F  M  +++IS+N
Sbjct: 281 IDMYAKSNL-------------------------------LXDAKKVFDVMAEQNVISYN 309

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +MI G S      EAL+LF  M          +  S++   A++ +LEL +Q+   +   
Sbjct: 310 AMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKX 369

Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
           G+  D    ++L+D Y KC ++K
Sbjct: 370 GVSLDLFAGSALIDVYSKCSYVK 392



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 162/341 (47%), Gaps = 64/341 (18%)

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G++ EA+ +F +L     E    + F+LA+VI AC  L  +E G Q+H  ++ +G D D
Sbjct: 14  EGYSEEALMVFVDLQRKSGE--HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQD 71

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             +G+SL++ Y K GB   A                               R VFD+  +
Sbjct: 72  VYVGTSLIDFYSKNGBIEVA-------------------------------RLVFDQLLE 100

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            ++V W ++I+GY        +L LF +MR   V+ D   ++SVLSACS L FLE GKQ+
Sbjct: 101 KTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI 160

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H +  + G   DV V                               +N +I  Y+ C R+
Sbjct: 161 HAYVLRRGTEMDVSV-------------------------------VNVLIDFYTKCNRV 189

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           +  + +F  M  K++ISW +MI G  QN    EA+ LF  MN+L  + D F+  SV+++C
Sbjct: 190 KAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 249

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            ++ +LE G QV A      L+S++ +   L+D Y K   +
Sbjct: 250 GSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLL 290



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 216/480 (45%), Gaps = 78/480 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C+    +  GKQ+H + L++G     + + N L+  Y +C        LFD+M
Sbjct: 141 VSSVLSACSMLEFLEGGKQIHAYVLRRGT-EMDVSVVNVLIDFYTKCNRVKAGRKLFDQM 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------P---------------------- 99
             +N  SW  MI G+M+     ++++LF  M      P                      
Sbjct: 200 VVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGR 259

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      + N+F  N LI  +AK+  L  A+ +F+ M  +N I++N+MI  Y    
Sbjct: 260 QVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQE 319

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF E+    V           +++G  A L ALE  KQIH  I+  G+  D  
Sbjct: 320 KLSEALELFHEMR---VRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLF 376

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GS+L+++                               Y+ C  + DAR VF+   +  
Sbjct: 377 AGSALIDV-------------------------------YSKCSYVKDARHVFEEMNEKD 405

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+WN+M  GY  + E+ EAL L+  ++ +    +  T A++++A S+L  L HG+Q H 
Sbjct: 406 IVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHN 465

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K+G+     V +AL+D Y+K G   +A K+F+     D +  N+MI+ ++  G  E+
Sbjct: 466 QLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEE 525

Query: 389 AKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
           A  +FR M  + +    +++ +++   S  G   + L+ F +M    ++      A V+S
Sbjct: 526 ALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVS 585



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 186/438 (42%), Gaps = 106/438 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L SC +  ++  G+Q+H + +K   L S   + N L+ MY +     DA  +FD M  +
Sbjct: 245 VLTSCGSLEALEQGRQVHAYTIKAN-LESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQ 303

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           N  S+NAMIEG+       ++L+LF+ M  +                             
Sbjct: 304 NVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIH 363

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     + F+ + LI  ++K   +K AR +F +M  ++ + WN+M   Y ++    
Sbjct: 364 GLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENE 423

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA++L+  L      R + + F  A +I A ++LA+L +G+Q H+ ++  GLDF      
Sbjct: 424 EALKLYSTLQ---FSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDF------ 474

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                   C                  F  +AL+  YA CG + +AR++F+ +     V 
Sbjct: 475 --------C-----------------PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVC 509

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNSMIS +  + E  EAL +F +M + G+  +  T  +VLSACS  G +E G        
Sbjct: 510 WNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMP 569

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G+               K G    AC                ++++    G++ +AK 
Sbjct: 570 GFGI---------------KPGTEHYAC----------------VVSLLGRSGKLFEAKE 598

Query: 392 IFRTMP-NKSLISWNSMI 408
               MP   + I W S++
Sbjct: 599 FIEKMPIEPAAIVWRSLL 616



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 411 LSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           +   G   EAL +F ++  K     ++F LASVI AC  +  +E G Q+   V   G D 
Sbjct: 11  MEDEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQ 70

Query: 470 DQIISTSLVDFYCKCGFIKM 489
           D  + TSL+DFY K G I++
Sbjct: 71  DVYVGTSLIDFYSKNGBIEV 90


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 219/493 (44%), Gaps = 105/493 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++H H LK G++     + + L+ MY +C    DA+ LFDE P+R
Sbjct: 112 VLKACGGLGRVIYGRRIHNHLLKTGLIWDVF-VGSSLMNMYAKCDQFVDAIKLFDEFPQR 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG-------------- 112
           +   WNA+I  + K G  E +L+ F+ M +     N  ++ +++S               
Sbjct: 171 DVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVH 230

Query: 113 ---------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                + K G L+ A+ +F  +PR+NAI WN+MI  Y   G +R
Sbjct: 231 RELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSR 290

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             + L   +N    E  +     L ++I A +    L +GK IH +IL N +D D  +  
Sbjct: 291 SCIELLMRMND---EGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDV 347

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL++ Y KC                               G ++ A  +F   +    V 
Sbjct: 348 SLIDFYFKC-------------------------------GYVSSAETIFRTISKNEVVS 376

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN MISG++      +AL ++  M+ + V  DA T +S LSACS L  L+ G+++H    
Sbjct: 377 WNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCII 436

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
              +  + IV  ALLD Y+K                               CG +++A+ 
Sbjct: 437 NHKLEANEIVMGALLDMYAK-------------------------------CGDVDEARK 465

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  +P + L+SW SMI     +G   EAL LF  M KL++R D  +  +V+SAC++   
Sbjct: 466 LFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGL 525

Query: 452 LELGEQVFARVTI 464
           ++ G   F  + +
Sbjct: 526 VDEGYMYFNEMVV 538



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 227/528 (42%), Gaps = 117/528 (22%)

Query: 5   IDYLARL--LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           +DY+  L  L++C +   +  GK +H      G   S + ++  L+  Y  C +   A L
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCG-FQSNIVLSKSLIGFYFSCHDYASAEL 59

Query: 63  LF--DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN-------VMPQ------------- 100
           +F  ++ P  +   WNA++  +       ++LQLF+       V P              
Sbjct: 60  VFQTNDCPL-DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGG 118

Query: 101 ---------------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSM 140
                          K    W++ +       +AK  +   A  LF++ P+R+   WN++
Sbjct: 119 LGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAV 178

Query: 141 IHCYVRNGFAREAVRLF---KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           I CY ++G A  A++ F   KEL        + ++     V+ +C  L  LE GK++H  
Sbjct: 179 ISCYFKDGKAEMALKTFDKMKELG------FEPNSVTFTVVVSSCTRLLNLERGKEVHRE 232

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           ++   +  D+                               F LSAL+  Y  CG +  A
Sbjct: 233 LIERRILLDA-------------------------------FVLSALVDMYGKCGCLEMA 261

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           + VF++    +++ WN+MI+GY    +    + L  +M   G      TL S++ A S  
Sbjct: 262 KEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRS 321

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L HGK +HG+  +  +  D+ +  +L+D Y K                          
Sbjct: 322 VQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFK-------------------------- 355

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                CG +  A+ IFRT+    ++SWN MI G    G+ I+AL ++ NM +  ++ D  
Sbjct: 356 -----CGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDAL 410

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + +S +SAC+ +++L+ G ++   +    L++++I+  +L+D Y KCG
Sbjct: 411 TFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCG 458



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 189/424 (44%), Gaps = 73/424 (17%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF--N 127
           R C S   + +G  KL H+    ++F+   Q N      LI  +    +  +A  +F  N
Sbjct: 11  RTCTSSKLLKQG--KLIHQ----RIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTN 64

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           D P   ++ WN+++  Y  N    EA++LF +LN +    ++ D +    V+ AC  L  
Sbjct: 65  DCPLDVSL-WNALLSAYTNNFRFVEALQLFDQLNCN--SYVRPDFYTYPVVLKACGGLGR 121

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           + YG++IH+H+L  GL +D  +GSSL+N+Y K                            
Sbjct: 122 VIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAK---------------------------- 153

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              C +  DA ++FD         WN++IS Y  + +   AL  F KM+  G   ++ T 
Sbjct: 154 ---CDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTF 210

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             V+S+C+ L  LE GK+VH    +  ++ D  V SAL+D Y K                
Sbjct: 211 TVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGK---------------- 254

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                          CG +E AK +F  +P K+ I+WN+MI G S  G     ++L   M
Sbjct: 255 ---------------CGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRM 299

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           N    +    +L S+I A +    L  G+ +   +    +D D  I  SL+DFY KCG++
Sbjct: 300 NDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYV 359

Query: 488 KMDE 491
              E
Sbjct: 360 SSAE 363



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 16/233 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   ++  G++LH   +    L +   +   LL MY +CG+  +A  LF ++P+R+
Sbjct: 416 LSACSQLAALDKGRELHYCIINHK-LEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRD 474

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTARTLFN 127
             SW +MI  +   G   ++L+LF+ M + N      ++  ++S  + AG +      FN
Sbjct: 475 LVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFN 534

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           +M  +  I      ++ +I    R G   EA  + +       +  + D  +L+T+  AC
Sbjct: 535 EMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQR-----SKETRSDIGLLSTLFSAC 589

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                   G QI   ++    D D      L N+Y     ++   +V   MKE
Sbjct: 590 LLHNNFVLGIQIGKMLIEVDPD-DPSTYILLSNMYASVNKWDEVRKVRRKMKE 641


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/593 (26%), Positives = 257/593 (43%), Gaps = 150/593 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+Q C T+ +   GK +H    +  + + T  ++N  +++Y +C +   A  +FD +
Sbjct: 9   LANLVQHCITNKAHLSGKVVHARLFRLALFSDTF-LSNHFIELYSKCDHIASACHVFDNI 67

Query: 68  PRRNCFSWNA-------------------------------MIEGFMKLGHKEKSLQLFN 96
           P +N FSWNA                               +I   ++ G++ ++L  ++
Sbjct: 68  PHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYD 127

Query: 97  ------VMP---------------------------------QKNDFSWNMLISGFAKAG 117
                 V+P                                 + N +  N L+  +AK G
Sbjct: 128 SVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCG 187

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
               A  +F D+P  N + + +M+    +    +EA  LF+ +   L + ++ D+  L++
Sbjct: 188 LNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLM---LRKGIRVDSVSLSS 244

Query: 178 VIGACAD----------LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           ++G CA           ++    GKQ+H+  +  G + D  L +SL+++Y K GD +SA 
Sbjct: 245 MLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAE 304

Query: 228 QVL-----------NMM------------------------KEPDDFCLSALISGYANCG 252
           +V            N+M                         EPDD     +++     G
Sbjct: 305 KVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSG 364

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +   R++FD     S   WN+++SGY  N +  EA+ LF KM+      D +TLA +LS
Sbjct: 365 DVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILS 424

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C+ LGFLE GK+VH  + K G  DDV VAS+L++ YSK G    +  +FS+L   D + 
Sbjct: 425 SCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVC 484

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N                               SM+ G S N    +AL  F  M +L  
Sbjct: 485 WN-------------------------------SMLAGFSINSLGQDALSFFKKMRQLGF 513

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
              +FS A+V+S+CA +SSL  G+Q  A++   G   D  + +SL++ YCKCG
Sbjct: 514 FPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCG 566



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 213/443 (48%), Gaps = 76/443 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ+H   +K G     L + N LL MY + G+   A  +F  + R +  SWN MI G+ 
Sbjct: 268 GKQMHTLSVKLG-FERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYG 326

Query: 84  KLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
              + EK+ +    M     + +D ++  +++   K+G+++T R +F+ MP  +  +WN+
Sbjct: 327 NRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCPSLTSWNA 386

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQC---DAFILATVIGACADLAALEYGKQIHS 196
           ++  Y +N   REAV LF+++      + QC   D   LA ++ +CA+L  LE GK++H+
Sbjct: 387 ILSGYNQNADHREAVELFRKM------QFQCQHPDRTTLAVILSSCAELGFLEAGKEVHA 440

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
                G   D  + SSL+N+Y K                               CGKM  
Sbjct: 441 ASQKFGFYDDVYVASSLINVYSK-------------------------------CGKMEL 469

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           ++ VF +  +   V WNSM++G+  N+   +AL  F KMR+ G      + A+V+S+C+ 
Sbjct: 470 SKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAK 529

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           L  L  G+Q H    K G +DD+ V S+L++ Y K                         
Sbjct: 530 LSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCK------------------------- 564

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
                 CG +  A+  F  MP ++ ++WN MI G +QNG    AL L+ +M     + D 
Sbjct: 565 ------CGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDD 618

Query: 437 FSLASVISACANISSLELGEQVF 459
            +  +V++AC++ + ++ G ++F
Sbjct: 619 ITYVAVLTACSHSALVDEGLEIF 641



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 172/400 (43%), Gaps = 81/400 (20%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-------- 98
           +L   ++ G+      +FD MP  +  SWNA++ G+ +     ++++LF  M        
Sbjct: 356 MLTACVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPD 415

Query: 99  --------------------------PQKNDFSWNM-----LISGFAKAGELKTARTLFN 127
                                      QK  F  ++     LI+ ++K G+++ ++ +F+
Sbjct: 416 RTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFS 475

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +P  + + WNSM+  +  N   ++A+  FK++            F  ATV+ +CA L++
Sbjct: 476 KLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQ---LGFFPSEFSFATVVSSCAKLSS 532

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q H+ I+ +G   D  +GSSL+ +Y KCGD N A                     
Sbjct: 533 LFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGA--------------------- 571

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                     R  FD     ++V WN MI GY  N +   AL L++ M  +G   D  T 
Sbjct: 572 ----------RCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITY 621

Query: 308 ASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPS------DACK 360
            +VL+ACS    ++ G ++ +    K GV+  V   + ++D  S+ G  +      DA  
Sbjct: 622 VAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMP 681

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
              +  V++ +L +  I    S  +   A+ ++R  P  S
Sbjct: 682 CKDDAVVWEVVLSSCRIHANLSLAK-RAAEELYRLDPQNS 720



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 115/271 (42%), Gaps = 44/271 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L SC     +  GK++H    K G  +    +A+ L+ +Y +CG    +  +F ++
Sbjct: 419 LAVILSSCAELGFLEAGKEVHAASQKFGFYDDVY-VASSLINVYSKCGKMELSKHVFSKL 477

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG----------- 112
           P  +   WN+M+ GF      + +L  F  M Q     ++FS+  ++S            
Sbjct: 478 PELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQ 537

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G++  AR  F+ MP RN + WN MIH Y +NG
Sbjct: 538 QFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNG 597

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
               A+ L+ ++ S      + D      V+ AC+  A ++ G +I + +L   G+    
Sbjct: 598 DGHNALCLYNDMIS---SGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKV 654

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
              + +++   + G FN    +L+ M   DD
Sbjct: 655 AHYTCIIDCLSRAGRFNEVEVILDAMPCKDD 685



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 23/238 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ SC    S+  G+Q H   +K G L+    + + L++MY +CG+   A   FD M
Sbjct: 520 FATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIF-VGSSLIEMYCKCGDVNGARCFFDVM 578

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P RN  +WN MI G+ + G    +L L+N M     + +D ++  +++  + +  +    
Sbjct: 579 PGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGL 638

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILA 176
            +FN M ++  +      +  +I C  R G        F E+   +++ + C  DA +  
Sbjct: 639 EIFNAMLQKYGVVPKVAHYTCIIDCLSRAG-------RFNEVEV-ILDAMPCKDDAVVWE 690

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            V+ +C   A L   K+    +    LD  +S     L N+Y   G ++ A+ V ++M
Sbjct: 691 VVLSSCRIHANLSLAKRAAEELY--RLDPQNSASYVLLANMYSSLGKWDDAHVVRDLM 746


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 202/398 (50%), Gaps = 39/398 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF+ MP++++ +W  +I+G+ +  +L  AR +F  M      AWN+MI  YV  G  +E
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQE 272

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD----FDSV 208
           A+ L +++       +Q D     T+I ACA++ + + GKQ+H++IL N L+    F   
Sbjct: 273 ALTLCRKMR---FLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLS 329

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+ LY K    + A ++   M   +    +A++SGY N G+M +A+  F+     +
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            +    MISG   N    E L LF +MR +G        A  L+ACS LG LE+G+Q+H 
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA 449

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
               +G    + V                                N MI++Y+ CG +E 
Sbjct: 450 QLVHLGYESSLSVG-------------------------------NAMISMYAKCGVVEA 478

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F TMP+  L+SWNSMI  L Q+G  ++A++LF  M K  +  D+ +  +V++AC++
Sbjct: 479 AESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSH 538

Query: 449 ISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCG 485
              +E G   F + +   G+   +     +VD +C+ G
Sbjct: 539 AGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAG 576



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 142/511 (27%), Positives = 241/511 (47%), Gaps = 55/511 (10%)

Query: 1   MDTRI--DYLARLLQSCNTHH--SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN 56
           +D R+  +  A  LQ C+     S  + + +H H +  G         NRLL+MY +  N
Sbjct: 5   LDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASG-FKPRGHFLNRLLEMYCKSSN 63

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
              A  LF+E+                               P  +  +   LI+ +   
Sbjct: 64  VVYARQLFEEI-------------------------------PNPDAIARTTLITAYCAL 92

Query: 117 GELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           G L+  R +FN  P   R+++ +N+MI  Y  NG    A+ LF+ +  D     + D F 
Sbjct: 93  GNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRD---DFRPDDFT 149

Query: 175 LATVIGACADLAALEYG-KQIHSHILVNGLD-FDSVLGSSLVNLYGK--------CGDFN 224
             +V+ A       E    Q+H  ++  G+    S + ++L+++Y K        C    
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMV 209

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
           SA ++ + M + D+   + +I+GY     +N AR VF+   +     WN+MISGY+    
Sbjct: 210 SARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGC 269

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD----VI 340
             EAL L  KMR  G+  D  T  +++SAC+++G  + GKQ+H +  K  +  +    + 
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLS 329

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V++AL+  Y K     +A K+F  + V + I  N +++ Y + GR+E+AK  F  MP K+
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           L++   MI GL+QNG   E L LF  M         F+ A  ++AC+ + +LE G Q+ A
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA 449

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++  +G +S   +  +++  Y KCG ++  E
Sbjct: 450 QLVHLGYESSLSVGNAMISMYAKCGVVEAAE 480


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 220/449 (48%), Gaps = 74/449 (16%)

Query: 8   LARLLQSCNTHHSI----HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           L    Q+C +   +     +G+ +H   ++KG   S   + N L+ MY +C    +A+ +
Sbjct: 248 LGSCAQACASEFDVVRAFRLGQCIHALIVRKG-FGSDQHVGNSLIDMYTKCMQMDEAVKV 306

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGEL 119
           FD +P  +  SWN +I GF + G   K+L++ N+M +     N+ +++ +++   KA ++
Sbjct: 307 FDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDV 366

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +AR +F+ + R +   WN+++  Y +    ++ V LF+ +     + +Q D   LA ++
Sbjct: 367 LSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQH---QNVQPDRTTLAVIL 423

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            +C+ L  L+ G Q+HS  +   L  D  + S LV++Y K                    
Sbjct: 424 SSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSK-------------------- 463

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                      CG++  AR +F+R T+   V WNSMISG   ++ + EA   F +MR NG
Sbjct: 464 -----------CGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNG 512

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           ++   S+ AS++++C+ L  +  G+Q+H    K G   +V V SAL+D Y+K        
Sbjct: 513 MMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAK-------- 564

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                                  CG ++DA+  F  M  K++++WN MI G +QNG   +
Sbjct: 565 -----------------------CGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEK 601

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+DLF  M   + R D  +  +V++ C++
Sbjct: 602 AVDLFEYMLTTEQRPDGVTFIAVLTGCSH 630



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 160/594 (26%), Positives = 256/594 (43%), Gaps = 151/594 (25%)

Query: 8   LARLLQSC---NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LA +LQ+C   +   S    +  H   L  G+   T  I NRL+++Y   G P DAL  F
Sbjct: 8   LAGVLQACIKRSPKPSRAHARAAHARVLAAGLGADTFLI-NRLVELYSVSGLPCDALRAF 66

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
             +PR N +S+NA +    + G  + +  L + MP +N  SWN +I+  A++     A  
Sbjct: 67  RSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALE 126

Query: 125 LFNDMPR---------------------------------------RNAIAWNSMIHCYV 145
           L+  M R                                        N    N+++  Y 
Sbjct: 127 LYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYT 186

Query: 146 RNGFAREAVRLFKELNSD-----------LVER-----------------LQCDAFILAT 177
           + G   +AVRLF  + S            LV+                  ++ D   +++
Sbjct: 187 KCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSS 246

Query: 178 VIGACADLAALEY--------GKQIHSHILVNGLDFDSVLGSSLVNLYGKC--------- 220
           V+G+CA   A E+        G+ IH+ I+  G   D  +G+SL+++Y KC         
Sbjct: 247 VLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKV 306

Query: 221 ----------------------GDFNSANQVLNMMK----EPDDFCLSALISGYANCGKM 254
                                 G +  A +VLN+M+    EP++   S ++   A+C K 
Sbjct: 307 FDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNML---ASCIKA 363

Query: 255 ND---ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
            D   AR +FD+ +  S   WN+++SGY       + + LF +M+   V  D +TLA +L
Sbjct: 364 RDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVIL 423

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           S+CS LG L+ G QVH  + +  + +D+ VAS L+D YSK G                  
Sbjct: 424 SSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCG------------------ 465

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                        +I  A+ IF  M  + ++ WNSMI GL+ +    EA D F  M    
Sbjct: 466 -------------QIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNG 512

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +   + S AS+I++CA +SS+  G Q+ A++   G D +  + ++L+D Y KCG
Sbjct: 513 MMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCG 566



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 217/462 (46%), Gaps = 77/462 (16%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  N ++E +   G    +L+ F  +P+ N +S+N  +S   +AG+L  AR L ++MP
Sbjct: 42  DTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMP 101

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            RN ++WN++I    R+  A EA+ L++ +   L E L    F LA+V+ AC  +AAL+ 
Sbjct: 102 DRNVVSWNTVIAALARSERAGEALELYEGM---LREGLVPTHFTLASVLSACGAVAALDD 158

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++ H   +  GLD +  + ++L+ +Y KCG    A ++ + M  P++   +A++ G   
Sbjct: 159 GRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQ 218

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G ++DA R                               LF +M R+GV  D   ++SV
Sbjct: 219 AGSVDDALR-------------------------------LFARMCRSGVRVDPVAVSSV 247

Query: 311 LSACSSLGFLEH--------GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           L +C+     E         G+ +H    + G   D  V ++L+D Y+K     +A K+F
Sbjct: 248 LGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVF 307

Query: 363 SELKVYDTILLNTMITVY--------------------------------SSCGRIED-- 388
             L    T+  N +IT +                                +SC +  D  
Sbjct: 308 DSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVL 367

Query: 389 -AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  +   S+ +WN+++ G  Q     + ++LF  M   +++ D+ +LA ++S+C+
Sbjct: 368 SARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCS 427

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            +  L+LG QV +      L +D  +++ LVD Y KCG I +
Sbjct: 428 RLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGI 469



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 151/302 (50%), Gaps = 41/302 (13%)

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +L  GL  D+ L + LV LY   G    A +    +  P+ +  +A +S     G ++ A
Sbjct: 34  VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R + D   D + V WN++I+    +    EAL L+  M R G++    TLASVLSAC ++
Sbjct: 94  RALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L+ G++ HG A KVG+ +++ V +ALL  Y+K                          
Sbjct: 154 AALDDGRRCHGLAVKVGLDENLFVENALLGMYTK-------------------------- 187

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                CG +EDA  +F  M + + +S+ +M+ GL Q GS  +AL LF  M +  +R+D  
Sbjct: 188 -----CGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPV 242

Query: 438 SLASVISACAN--------ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +++SV+ +CA         + +  LG+ + A +   G  SDQ +  SL+D Y KC  ++M
Sbjct: 243 AVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKC--MQM 300

Query: 490 DE 491
           DE
Sbjct: 301 DE 302



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 73/302 (24%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK------------ 101
           A  +FD++ R +  +WN ++ G+ +    + +++LF      NV P +            
Sbjct: 369 ARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSR 428

Query: 102 --------------------ND-FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                               ND F  + L+  ++K G++  AR +FN M  R+ + WNSM
Sbjct: 429 LGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSM 488

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I     +    EA   FK++  + +   +      A++I +CA L+++  G+QIH+ I+ 
Sbjct: 489 ISGLAIHSLNEEAFDFFKQMRGNGMMPTESS---YASMINSCARLSSVPQGRQIHAQIVK 545

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G D +  +GS+L+++Y KCG+                               M+DAR  
Sbjct: 546 DGYDQNVYVGSALIDMYAKCGN-------------------------------MDDARVF 574

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD     + V WN MI GY  N    +A+ LF  M       D  T  +VL+ CS  G +
Sbjct: 575 FDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLV 634

Query: 321 EH 322
           + 
Sbjct: 635 DE 636



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 3/188 (1%)

Query: 304 ASTLASVLSAC---SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           A+ LA VL AC   S      H +  H      G+  D  + + L++ YS  G+P DA +
Sbjct: 5   AAQLAGVLQACIKRSPKPSRAHARAAHARVLAAGLGADTFLINRLVELYSVSGLPCDALR 64

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
            F  L   +    N  ++     G ++ A+ +   MP+++++SWN++I  L+++    EA
Sbjct: 65  AFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEA 124

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L+L+  M +  L    F+LASV+SAC  +++L+ G +       +GLD +  +  +L+  
Sbjct: 125 LELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGM 184

Query: 481 YCKCGFIK 488
           Y KCG ++
Sbjct: 185 YTKCGGVE 192



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 18/242 (7%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M T   Y A ++ SC    S+  G+Q+H   +K G  +  + + + L+ MY +CGN  DA
Sbjct: 514 MPTESSY-ASMINSCARLSSVPQGRQIHAQIVKDG-YDQNVYVGSALIDMYAKCGNMDDA 571

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND-FSWNMLISGFAKA 116
            + FD M  +N  +WN MI G+ + G  EK++ LF  M    Q+ D  ++  +++G + +
Sbjct: 572 RVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHS 631

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFI 174
           G +  A   FN M     I   +  +  + +G  R A RL +     L++ + C  D  +
Sbjct: 632 GLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGR-AGRLVEV--EALIDNMPCKDDPIV 688

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLN 231
              ++ ACA     E G+    H+       D    S  V   N+Y   G    A+ V  
Sbjct: 689 WEVLLAACAVHHNAELGECAAKHL----FRLDPKNPSPYVLLSNIYASLGRHGDASGVRA 744

Query: 232 MM 233
           +M
Sbjct: 745 LM 746


>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
          Length = 885

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 223/487 (45%), Gaps = 105/487 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
           +AN L+  Y R    +DA  +FDEMP R+  SW AM+  ++KLGH  + ++LF  M    
Sbjct: 386 VANNLISAYARFDEVSDARKVFDEMPERSVVSWTAMMNAYLKLGHYGEVVRLFFDMVGSG 445

Query: 100 -QKNDFSWNMLISG----------------------------------FAKAGELKTART 124
            Q N  ++  L+                                    +A+ G++ +A  
Sbjct: 446 VQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASA 505

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ M  R+ I+W +MI  YV++G   +A+R+F E+ S   E  + + F + +V+ ACA+
Sbjct: 506 IFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVS---EGFRPNEFTVCSVLKACAE 562

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
             A+ +GKQ+H                        C        VL  M + D    SAL
Sbjct: 563 EKAVRFGKQLH------------------------CA-------VLKKMYKNDIHIGSAL 591

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           ++ YA CG++ DA+ VFD     +++ W SMISGY  +    +A+ LF KM+   V  + 
Sbjct: 592 VTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAIFLFRKMKMRRVFVNN 651

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  +LSAC SL  L  GK++H    K  + D++ + S                     
Sbjct: 652 LTIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNLQIGS--------------------- 690

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                     T++  Y  CG    A  I   MP++  ISW ++I G +  G  +EAL   
Sbjct: 691 ----------TLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSL 740

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +M    ++ + ++ +S + ACA + +L+ G ++   V      S+  + +SL+D Y +C
Sbjct: 741 DDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRC 800

Query: 485 GFIKMDE 491
           G  K+DE
Sbjct: 801 G--KVDE 805



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 219/478 (45%), Gaps = 106/478 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC       +G+Q+H   +K G  N  +  A  +   Y +CG+   A  +FD+M  R
Sbjct: 456 LLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSA--IAHFYAQCGDVASASAIFDKMASR 513

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS--------------------- 105
           +  SW  MI  +++ GH  ++L++F+ M     + N+F+                     
Sbjct: 514 DVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLH 573

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + L++ +A+ GE+  A+ +F+ MPRRN I W SMI  Y ++G   
Sbjct: 574 CAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGE 633

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF+++    + R+  +   +  ++ AC  L +L  GK++H+ I+ N ++ +  +GS
Sbjct: 634 KAIFLFRKMK---MRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNSMEDNLQIGS 690

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV  Y KC                               G+   A R+ +   D  ++ 
Sbjct: 691 TLVWFYCKC-------------------------------GEYTYAARILEAMPDRDAIS 719

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W ++ISGY +   + EAL     M  +GV  +  T +S L AC+ L  L++G+++HG   
Sbjct: 720 WTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVN 779

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     +V V S+L+D Y +                               CG++++A+ 
Sbjct: 780 KTQDFSNVFVGSSLIDMYMR-------------------------------CGKVDEARR 808

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +F  MP  +L++W  +I G +QNG   EAL     M +    +D F L++V+++C ++
Sbjct: 809 VFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDL 866



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    ++  G+++H  F+ K    S + + + L+ MYMRCG   +A  +FD MP  N
Sbjct: 759 LKACAKLEALQYGRKIH-GFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVFDAMPEHN 817

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             +W  +I GF + G  E++L+   +M Q+    +DF   +L +     G+L+     F+
Sbjct: 818 LVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDF---VLSTVLTSCGDLQWKSISFS 874

Query: 128 D 128
           D
Sbjct: 875 D 875


>gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1218

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/540 (28%), Positives = 245/540 (45%), Gaps = 96/540 (17%)

Query: 28  HLHFL-KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           HL++L KKG LN  +     + Q   +    T   LL      ++C   N++  G     
Sbjct: 45  HLNYLCKKGRLNEAVSALELIAQHGSKVSPKTFISLL------QSCIDCNSVTLGRKVHA 98

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
           H       F+++ +KN F    L+S +AK G L  AR LF +M  +N   W++MI  + R
Sbjct: 99  H-------FHLVQEKNPFLETKLVSMYAKCGSLSDARKLFGEMREKNLYTWSAMIGAFSR 151

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
               +E V LF  +   + E    DAF+L  ++ AC +   ++ G+ +HS  +  G+D  
Sbjct: 152 EHRWKEVVELFYMM---MEENCLPDAFLLPKILQACGNSRDIKSGEMVHSLAIKCGVDGY 208

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR--- 263
             + +S++ +Y KCG  + A++   MM + +    +ALISGY   G++ +A+R+FD    
Sbjct: 209 PFVNNSILAVYAKCGKLSLASKCFEMMDKSETAAWNALISGYCQHGQIEEAQRLFDAMRE 268

Query: 264 ------------------------------------TTDTSSVMWNSMISGYISNNEDTE 287
                                                T    V W SMISG   N++ ++
Sbjct: 269 EGIEPGLVSWNILIAGYNQLGYFDIAMELMKKMEVLGTSPDVVTWTSMISGLAQNDKASK 328

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           AL LF+ M    V  +  T++S +SAC+SL  L  G ++H  A K+G ++DV+V ++L+D
Sbjct: 329 ALHLFNDMILARVEPNGVTISSAVSACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLID 388

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF------RTMPN--- 398
            YSK G   +A K+F  +   D    N+MI  Y   G    A  +F       T PN   
Sbjct: 389 MYSKCGKLENAWKVFDMMPEKDVYTWNSMIGGYCQVGYCGKAHMLFMKMQKSETQPNAIT 448

Query: 399 -------------------------------KSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                                          +   SWNS+I G  Q G   +AL +F  M
Sbjct: 449 WNNMIWGYIHNGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGYLQIGQKDKALSIFRQM 508

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
               + ++  ++ SV+ ACAN+ +L++ +++   V    LDS   I+ SL+D Y K G I
Sbjct: 509 QSFSININSVTILSVLPACANLIALKMVKEIHGCVIRRNLDSLLPITNSLIDTYAKSGNI 568



 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 225/463 (48%), Gaps = 45/463 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L ++LQ+C     I  G+ +H   +K G+      + N +L +Y +CG  + A   F+ M
Sbjct: 177 LPKILQACGNSRDIKSGEMVHSLAIKCGVDGYPF-VNNSILAVYAKCGKLSLASKCFEMM 235

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKTAR 123
            +    +WNA+I G+ + G  E++ +LF+ M ++       SWN+LI+G+ + G    A 
Sbjct: 236 DKSETAAWNALISGYCQHGQIEEAQRLFDAMREEGIEPGLVSWNILIAGYNQLGYFDIAM 295

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            L   M       + + W SMI    +N  A +A+ LF ++   ++ R++ +   +++ +
Sbjct: 296 ELMKKMEVLGTSPDVVTWTSMISGLAQNDKASKALHLFNDM---ILARVEPNGVTISSAV 352

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA L  L  G +IH+  +  G   D ++G+SL+++Y KCG   +A +V +MM E D +
Sbjct: 353 SACASLKVLNEGLEIHALAVKLGFVEDVLVGNSLIDMYSKCGKLENAWKVFDMMPEKDVY 412

Query: 240 CLSALISGYANCGKMNDARRVFDR----TTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
             +++I GY   G    A  +F +     T  +++ WN+MI GYI N ++ +A+ LF +M
Sbjct: 413 TWNSMIGGYCQVGYCGKAHMLFMKMQKSETQPNAITWNNMIWGYIHNGDEDQAMDLFRRM 472

Query: 296 RRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRG 353
             +G ++ D ++  S++S    +G  +    +        + I+ V + S L        
Sbjct: 473 EEDGKIKRDTASWNSLISGYLQIGQKDKALSIFRQMQSFSININSVTILSVL-------- 524

Query: 354 MPSDACKLFSELKVYDTI--------------LLNTMITVYSSCGRIEDAKHIFRTMPNK 399
               AC     LK+   I              + N++I  Y+  G I  ++ IF     K
Sbjct: 525 ---PACANLIALKMVKEIHGCVIRRNLDSLLPITNSLIDTYAKSGNIGYSRTIFDRALFK 581

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK--FSLA 440
             I+WNS+I G    G    AL L   M KL ++ ++  FSLA
Sbjct: 582 DFITWNSLIAGYVLFGCSDAALGLVDQMKKLGIKPNRSTFSLA 624



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 20/204 (9%)

Query: 302 EDASTLASVLSACSSLGFLEHGKQVH-GHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           +D  +  S     SS+ F +     H  + CK G +++ + A  L+  +  +  P     
Sbjct: 20  QDTLSAFSTKPTKSSVPFTKKITDSHLNYLCKKGRLNEAVSALELIAQHGSKVSPKTFIS 79

Query: 361 L-------------------FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           L                   F  ++  +  L   ++++Y+ CG + DA+ +F  M  K+L
Sbjct: 80  LLQSCIDCNSVTLGRKVHAHFHLVQEKNPFLETKLVSMYAKCGSLSDARKLFGEMREKNL 139

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
            +W++MI   S+     E ++LF  M + +   D F L  ++ AC N   ++ GE V + 
Sbjct: 140 YTWSAMIGAFSREHRWKEVVELFYMMMEENCLPDAFLLPKILQACGNSRDIKSGEMVHSL 199

Query: 462 VTIIGLDSDQIISTSLVDFYCKCG 485
               G+D    ++ S++  Y KCG
Sbjct: 200 AIKCGVDGYPFVNNSILAVYAKCG 223


>gi|302818375|ref|XP_002990861.1| hypothetical protein SELMODRAFT_42073 [Selaginella moellendorffii]
 gi|300141422|gb|EFJ08134.1| hypothetical protein SELMODRAFT_42073 [Selaginella moellendorffii]
          Length = 517

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 197/386 (51%), Gaps = 47/386 (12%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+  + + G+ +TAR +F  +P +  ++WN++I  Y RNG A++A+RL K ++   +E
Sbjct: 40  NALVGMYGRCGDCQTARMVFEGLPEKTVVSWNTVIGAYARNGLAKDALRLMKAMD---LE 96

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++ D     +++ AC  L  L   +  ++ ++ +GL  D  + +SLVN++GK       
Sbjct: 97  GMKADRITFLSLVEACTGLGCLAESRLAYARVVSSGLGSDVAVAASLVNMFGKSS----- 151

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                      + DA+  FD   + + V WN +++ Y  N   T
Sbjct: 152 --------------------------SLADAKLAFDTIPEKNVVSWNVIMAAYNQNGCPT 185

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL LF++M       D  +    L AC SL  L  G+ VH    + G   D+++ +AL+
Sbjct: 186 EALRLFYEMTE----PDKVSFLYALDACVSLKALSDGRDVHASVTRHGFGSDLVLGNALI 241

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKS 400
           + YSK   P+DA  +F  + V D++  NTMI  Y+  G  E+A  +F  M      P+K 
Sbjct: 242 NMYSKCSSPADARNVFDGMTVRDSVSWNTMIATYARNGFGEEAVEVFHEMALVGIPPDKV 301

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            ++W  MI    QNG   EA++L+    ++D+  DK   ASV+ AC++  +LE G+++ A
Sbjct: 302 ALTWARMITAYGQNGFGNEAIELY---KQIDVVPDKVIFASVLDACSSAMNLEEGKRIHA 358

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGF 486
           R+     + D +++ +L+D Y  CGF
Sbjct: 359 RIVEGKFEIDTVVNNTLLDLYGMCGF 384



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 217/502 (43%), Gaps = 89/502 (17%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ YLA ++ +C+    ++  KQ H   ++ G  ++ L + N L+ MY RCG+   A ++
Sbjct: 1   KVTYLA-VVDACSKLFDLNRAKQAHSRIVESG-WHANLNVGNALVGMYGRCGDCQTARMV 58

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------ 99
           F+ +P +   SWN +I  + + G  + +L+L   M                         
Sbjct: 59  FEGLPEKTVVSWNTVIGAYARNGLAKDALRLMKAMDLEGMKADRITFLSLVEACTGLGCL 118

Query: 100 QKNDFSWNMLISG---------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
            ++  ++  ++S                F K+  L  A+  F+ +P +N ++WN ++  Y
Sbjct: 119 AESRLAYARVVSSGLGSDVAVAASLVNMFGKSSSLADAKLAFDTIPEKNVVSWNVIMAAY 178

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            +NG   EA+RLF E+        + D       + AC  L AL  G+ +H+ +  +G  
Sbjct: 179 NQNGCPTEALRLFYEMT-------EPDKVSFLYALDACVSLKALSDGRDVHASVTRHGFG 231

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR- 263
            D VLG++L+N+Y KC     A  V + M   D    + +I+ YA  G   +A  VF   
Sbjct: 232 SDLVLGNALINMYSKCSSPADARNVFDGMTVRDSVSWNTMIATYARNGFGEEAVEVFHEM 291

Query: 264 -----TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
                  D  ++ W  MI+ Y  N    EA+ L+ ++    V+ D    ASVL ACSS  
Sbjct: 292 ALVGIPPDKVALTWARMITAYGQNGFGNEAIELYKQID---VVPDKVIFASVLDACSSAM 348

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            LE GK++H    +     D +V + LLD Y   G   +A ++F  L   D +   +M+ 
Sbjct: 349 NLEEGKRIHARIVEGKFEIDTVVNNTLLDLYGMCGF-GEARRVFDRLDKRDVVSWTSMMV 407

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
            Y+S                               +GS +EA+DLF  M    +  D+ +
Sbjct: 408 AYAS-------------------------------HGSSLEAIDLFQEMQLQGMEPDEVA 436

Query: 439 LASVISACANISSLELGEQVFA 460
             +V+ AC +      G   FA
Sbjct: 437 FLAVLFACNHAGFFRRGWDYFA 458



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 66/308 (21%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            V+ AC+ L  L   KQ HS I+ +G   +  +G++LV +YG+CGD  +A          
Sbjct: 6   AVVDACSKLFDLNRAKQAHSRIVESGWHANLNVGNALVGMYGRCGDCQTA---------- 55

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                                R VF+   + + V WN++I  Y  N    +AL L   M 
Sbjct: 56  ---------------------RMVFEGLPEKTVVSWNTVIGAYARNGLAKDALRLMKAMD 94

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
             G+  D  T  S++ AC+ LG L   +  +      G+  DV VA++L++ + K     
Sbjct: 95  LEGMKADRITFLSLVEACTGLGCLAESRLAYARVVSSGLGSDVAVAASLVNMFGKS---- 150

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
                                        + DAK  F T+P K+++SWN ++   +QNG 
Sbjct: 151 ---------------------------SSLADAKLAFDTIPEKNVVSWNVIMAAYNQNGC 183

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
           P EAL LF  M +     DK S    + AC ++ +L  G  V A VT  G  SD ++  +
Sbjct: 184 PTEALRLFYEMTE----PDKVSFLYALDACVSLKALSDGRDVHASVTRHGFGSDLVLGNA 239

Query: 477 LVDFYCKC 484
           L++ Y KC
Sbjct: 240 LINMYSKC 247


>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
          Length = 830

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/565 (27%), Positives = 241/565 (42%), Gaps = 118/565 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  GKQ+H   LK G        I  +L+  Y +C     A +LF ++
Sbjct: 74  GEILQGCVYERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQVLFSKL 133

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             RN FSW A+I    ++G  E +L  F  M +   F  N ++                 
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGR 193

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G L  AR +F+++P RN +AWN+++  YV+NG
Sbjct: 194 GVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQNG 253

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  ++  D VE  +     ++T + A A++  +  GKQ H+  ++NGL+ D++
Sbjct: 254 MNEEAIRLLSDMRKDGVEPSR---VTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNI 310

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+SL+N Y K G    A  + + M + D    + LISGY   G + D            
Sbjct: 311 LGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLVED------------ 358

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                              A+ +   MR   +  D  TL++++SA +    L+ GK+V  
Sbjct: 359 -------------------AIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQC 399

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC----- 383
           +  +  +  D+++AS  +D Y+K G   DA K+F      D IL NT++  Y+       
Sbjct: 400 YCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGE 459

Query: 384 ------------------------------GRIEDAKHIFRTM------PNKSLISWNSM 407
                                         G + +AK +F  M      PN  LISW +M
Sbjct: 460 ALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPN--LISWTTM 517

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + G+ QNG   EA+     M    LR + FS+   +SA AN++SL  G  +   +     
Sbjct: 518 MNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQ 577

Query: 468 DSDQI-ISTSLVDFYCKCGFIKMDE 491
            S  + I TSLVD Y KCG I   E
Sbjct: 578 HSSSVSIETSLVDMYAKCGDINKAE 602



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 237/503 (47%), Gaps = 97/503 (19%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L   + +A+ L  MY +CG   DA  +FDE+P RN 
Sbjct: 181 KACGALQWSRFGRGVHGYVVKAG-LEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNV 239

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSW------NM------------ 108
            +WNA++ G+++ G  E++++L +      V P +   S       NM            
Sbjct: 240 VAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAI 299

Query: 109 ---------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                          L++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 300 AILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQQGLVEDA 359

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +    +E L+ D   L+T++ A A    L++GK++  + + + L+ D VL S  
Sbjct: 360 IYMCQLMR---LENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVLASIT 416

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC---------------------- 251
           +++Y KCG    A +V +   E D    + L++ YA                        
Sbjct: 417 MDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNV 476

Query: 252 -------------GKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHK 294
                        G++N+A+ +F +   +      + W +M++G + N    EA+L   K
Sbjct: 477 ITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRK 536

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRG 353
           M+ +G+  +A ++   LSA ++L  L  G+ +HG+  + +     V + ++L+D Y+K G
Sbjct: 537 MQDSGLRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCG 596

Query: 354 MPSDA-----CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT---MPNKS-LISW 404
             + A      KL+SEL +Y     N MI+ Y+  G +++A  ++R+   M NK   I++
Sbjct: 597 DINKAERVFGSKLYSELPLY-----NAMISAYALYGNVKEAITLYRSLEDMGNKPDNITF 651

Query: 405 NSMIVGLSQNGSPIEALDLFCNM 427
            S++   +  G   +A+++F +M
Sbjct: 652 TSLLSACNHVGDINQAIEIFTDM 674



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG  +EA+ L  +++      L+    I   ++  C     L  GKQIH+ IL NG   
Sbjct: 47  KNGEIKEALSLVTKMD---FRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG--- 100

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + N+ +           + L+  YA C  +  A+ +F +  
Sbjct: 101 ----------------DFYAGNEYIE----------TKLVIFYAKCDALEIAQVLFSKLR 134

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL+ F +M  N +  D   + +V  AC +L +   G+ 
Sbjct: 135 VRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRG 194

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+ D V VAS+L D Y K                               CG 
Sbjct: 195 VHGYVVKAGLEDCVFVASSLADMYGK-------------------------------CGV 223

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++DA+ +F  +P +++++WN+++VG  QNG   EA+ L  +M K  +   + ++++ +SA
Sbjct: 224 LDDARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSA 283

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+  +  G+Q  A   + GL+ D I+ TSL++FYCK G I+  E
Sbjct: 284 SANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAE 329



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +KH      N S  S+   +  L +NG   EAL L   M+  +LR+       ++  C  
Sbjct: 23  SKHHDDQALNPSSTSYFHRVSSLCKNGEIKEALSLVTKMDFRNLRIGPEIYGEILQGCVY 82

Query: 449 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
              L  G+Q+ AR+   G     ++ I T LV FY KC  +++ +
Sbjct: 83  ERDLCTGKQIHARILKNGDFYAGNEYIETKLVIFYAKCDALEIAQ 127


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 39/401 (9%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
           ++ +LF+ MP +++ SW  +I+G+ K  +L  A+   N   ++  +AWN+MI  Y   G 
Sbjct: 210 EARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN----GLDF 205
             EA  +F+++   ++ ++Q D F   +VI  CA+      GK++H++ L        D 
Sbjct: 270 YLEAFEMFRKM---IMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDV 326

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
              + ++L+  Y KCG  + A ++ N M E D    + ++SGY N   M++A+  F+   
Sbjct: 327 AMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMP 386

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           + + + W  MISG        EAL  F++M+  G        A  + +CS LG L+HG+Q
Sbjct: 387 EKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ 446

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H    + G    +   +AL                               IT+Y+ CG 
Sbjct: 447 LHAQVVRYGYESSLSAGNAL-------------------------------ITMYARCGV 475

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++ A  +F  MP    ISWN+MI  L Q+G   +A++LF  M K  +  D+ S  +VISA
Sbjct: 476 VDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISA 535

Query: 446 CANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           C++   ++ G + F  +  + G++ D+     ++D  C+ G
Sbjct: 536 CSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAG 576



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 233/503 (46%), Gaps = 53/503 (10%)

Query: 3   TRIDYLARLLQSC--NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           T  +    LLQ C   +  S  + + +H H +  G       I NRL+ +Y +      A
Sbjct: 9   TAANRYGSLLQICCLQSPISYSLARPVHAHMIASG-FQPRGHILNRLIDIYSKSSKLNYA 67

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
             LFDE+P                               Q +  +   LI+ ++ AG+LK
Sbjct: 68  RYLFDEIP-------------------------------QPDIVARTTLIAAYSAAGDLK 96

Query: 121 TARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +R +F+D P   R+++ +N+MI  Y  N     A+ LF ++  D     + D +   +V
Sbjct: 97  LSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRD---NFRPDNYTFTSV 153

Query: 179 IGACADLAALE-YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---------FNSANQ 228
           +GA A +A  E + +Q+H  ++ +G  F + + ++L++ Y KC              A +
Sbjct: 154 LGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARK 213

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + + M   D+   + +I+GY     ++ A+   + T+    V WN+MISGY       EA
Sbjct: 214 LFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEA 273

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV--GVIDDVI--VASA 344
             +F KM  + +  D  T  SV+S C++ G    GK++H +  K       DV   V +A
Sbjct: 274 FEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNA 333

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  Y K G    A ++F+++   D +  N +++ Y +   +++AK  F  MP K+++SW
Sbjct: 334 LITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSW 393

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
             MI GL+Q G   EAL  F  M         ++ A  I +C+ + SL+ G Q+ A+V  
Sbjct: 394 IIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVR 453

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
            G +S      +L+  Y +CG +
Sbjct: 454 YGYESSLSAGNALITMYARCGVV 476



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 178/398 (44%), Gaps = 76/398 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++  C       +GK++H +FLK       +  +P+ N L+  Y +CG    A  +F++M
Sbjct: 295 VISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKM 354

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+  SWN ++ G++ +   +++   FN MP+KN  SW ++ISG A+            
Sbjct: 355 PERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQI----------- 403

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                               GFA EA++ F  +     E   CD +  A  I +C+ L +
Sbjct: 404 --------------------GFAEEALKFFNRMKLQGFE--PCD-YAFAGAIISCSVLGS 440

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L++G+Q+H+ ++  G +     G++L+ +Y +CG  ++A+            CL      
Sbjct: 441 LKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAH------------CL------ 482

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                        F       ++ WN+MI+    + + T+A+ LF +M + G+L D  + 
Sbjct: 483 -------------FINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISF 529

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSEL- 365
            +V+SACS  G ++ G++       V GV  D    + ++D   + G  S+A ++   + 
Sbjct: 530 LTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMP 589

Query: 366 -----KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
                 +++ +L    I      G IE A+ +F   P 
Sbjct: 590 FEPGAPIWEALLAGCRIHGNIDLG-IEAAERLFELKPQ 626


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 146/527 (27%), Positives = 240/527 (45%), Gaps = 115/527 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C       VGKQ+H   +K G +   + +   L+ MYM+  +  D   +FDEM
Sbjct: 95  LSCVLKVCGCLFDRIVGKQVHCQCIKCGFVED-VSVGTSLVDMYMKTESVEDGERVFDEM 153

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKT-- 121
             +N  SW +++ G+ + G  E++L+LF+ M     + N F++  ++ G A  G ++   
Sbjct: 154 RVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGV 213

Query: 122 ---------------------------------ARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                            A+ +F+ M  RNA++WNSMI  +V NG
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA  LF  +  + V+  Q    I ATVI  CA++  + + KQ+H  ++ NG DFD  
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQT---IFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN 330

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+  Y KC + +            D F L  ++ G  N                  
Sbjct: 331 IKTALMVAYSKCSEID------------DAFKLFCMMHGVQNV----------------- 361

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSS-LGFLEHGKQV 326
            V W ++ISGY+ N     A+ LF +MRR  GV  +  T +SVL+AC++    +E GKQ 
Sbjct: 362 -VSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQF 420

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  + K G  + + V+SAL+  Y+KRG                                I
Sbjct: 421 HSCSIKSGFSNALCVSSALVTMYAKRG-------------------------------NI 449

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           E A  +F+   ++ L+SWNSMI G +Q+G   ++L +F  M   +L +D  +   VISAC
Sbjct: 450 ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISAC 509

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKCGFIK 488
            +   +  G++ F     + +    I+ T      +VD Y + G ++
Sbjct: 510 THAGLVNEGQRYFD----LMVKDYHIVPTMEHYSCMVDLYSRAGMLE 552



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 161/366 (43%), Gaps = 65/366 (17%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           ++ LF++ P++     N ++  + RN   +EA+ LF  L          D   L+ V+  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRS---GSPTDGSSLSCVLKV 101

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C  L     GKQ+H   +  G   D  +G+SLV++Y K                      
Sbjct: 102 CGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTES------------------- 142

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                       + D  RVFD     + V W S+++GY  N  + +AL LF +M+  G+ 
Sbjct: 143 ------------VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +  T A+VL   ++ G +E G QVH    K G+   + V +++++ YSK  M SDA   
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA--- 247

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                                       K +F +M N++ +SWNSMI G   NG  +EA 
Sbjct: 248 ----------------------------KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAF 279

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M    +++ +   A+VI  CANI  +   +Q+  +V   G D D  I T+L+  Y
Sbjct: 280 ELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAY 339

Query: 482 CKCGFI 487
            KC  I
Sbjct: 340 SKCSEI 345


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 200/410 (48%), Gaps = 64/410 (15%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++    K G  +++ +LF+ MP ++ ++WN++IS +A  G L  AR LFN+ P  N+I
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSI 100

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W+S++  Y +NG   E +R F ++ SD  +  Q   + L +V+ AC+ L+ L  GK IH
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQ---YTLGSVLRACSTLSLLHTGKMIH 157

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            + +   L+ +  + + LV++Y KC     A  +   + +  ++                
Sbjct: 158 CYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNY---------------- 201

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                         V W +M++GY  N E  +A+  F +MR  G+  +  T  S+L+AC+
Sbjct: 202 --------------VQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACT 247

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+     G+QVHG     G   +V V SAL+D Y+K                        
Sbjct: 248 SISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAK------------------------ 283

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  CG +  A+ I  TM    ++ WNSMIVG   +G   EAL LF  M+  D+R+D
Sbjct: 284 -------CGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRID 336

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            F+  SV+ + A+  +L++GE V +     G D+ + +S +LVD Y K G
Sbjct: 337 DFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQG 386



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 208/481 (43%), Gaps = 105/481 (21%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N ++  Y   GN  +A  LF+E P  N  +W++++ G+ K G + + L+ F+ M      
Sbjct: 72  NIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQK 131

Query: 99  P---------------------------------QKNDFSWNMLISGFAKAGELKTARTL 125
           P                                 + N F    L+  ++K   L  A  L
Sbjct: 132 PSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYL 191

Query: 126 FNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           F  +P R+N + W +M+  Y +NG + +A++ FKE+ +   + ++ + F   +++ AC  
Sbjct: 192 FFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRN---QGMESNHFTFPSILTACTS 248

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           ++A  +G+Q+H  I+ +G                                 P+ +  SAL
Sbjct: 249 ISAYAFGRQVHGCIIWSGFG-------------------------------PNVYVQSAL 277

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  YA CG +  AR + D       V WNSMI G +++    EAL+LFHKM    +  D 
Sbjct: 278 VDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDD 337

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T  SVL + +S   L+ G+ VH    K G                      DACK  S 
Sbjct: 338 FTYPSVLKSLASCKNLKIGESVHSLTIKTGF---------------------DACKTVS- 375

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                    N ++ +Y+  G +  A  +F  + +K +ISW S++ G   NG   +AL LF
Sbjct: 376 ---------NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLF 426

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           C+M    + +D+F +A V SACA ++ +E G QV A        S      SL+  Y KC
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKC 486

Query: 485 G 485
           G
Sbjct: 487 G 487



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 221/496 (44%), Gaps = 83/496 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C+T   +H GK +H + +K   L + + +A  L+ MY +C    +A  LF  +
Sbjct: 137 LGSVLRACSTLSLLHTGKMIHCYAIKIQ-LEANIFVATGLVDMYSKCKCLLEAEYLFFSL 195

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW---------------- 106
           P R+N   W AM+ G+ + G   K++Q F  M     + N F++                
Sbjct: 196 PDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFG 255

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              + L+  +AK G+L +AR + + M   + + WNSMI   V +
Sbjct: 256 RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTH 315

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G+  EA+ LF ++++     ++ D F   +V+ + A    L+ G+ +HS  +  G D   
Sbjct: 316 GYMEEALVLFHKMHN---RDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACK 372

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++LV++Y K G+ + A  V N + + D    ++L+                      
Sbjct: 373 TVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLV---------------------- 410

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                    +GY+ N    +AL LF  MR   V  D   +A V SAC+ L  +E G+QVH
Sbjct: 411 ---------TGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVH 461

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +  K      +   ++L+  Y+K G   DA ++   ++  + I    +I  Y+  G +E
Sbjct: 462 ANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNGLVE 521

Query: 388 DAKHIFRTMPNKSLIS-----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
             +  F +M     I      +  MI  L + G   EA  L   +N++D+  D     S+
Sbjct: 522 TGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHL---LNRMDVEPDATIWKSL 578

Query: 443 ISACANISSLELGEQV 458
           +SAC    +LELGE+ 
Sbjct: 579 LSACRVHGNLELGERA 594



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 211/478 (44%), Gaps = 102/478 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  +   G+Q+H   +  G     + + + L+ MY +CG+   A ++ D M   
Sbjct: 242 ILTACTSISAYAFGRQVHGCIIWSG-FGPNVYVQSALVDMYAKCGDLASARMILDTMEID 300

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW-------------------- 106
           +   WN+MI G +  G+ E++L LF+ M  +    +DF++                    
Sbjct: 301 DVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVH 360

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+  +AK G L  A  +FN +  ++ I+W S++  YV NGF  
Sbjct: 361 SLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHE 420

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A++LF ++ +    R+  D F++A V  ACA+L  +E+G+Q+H++ + +         +
Sbjct: 421 KALQLFCDMRT---ARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAEN 477

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT---- 267
           SL+ +Y KCG    A +V + M+  +    +A+I GYA  G +   +  F+         
Sbjct: 478 SLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIK 537

Query: 268 -SSVMWNSMI-----SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
            +S  +  MI     +G I+  E        H + R  V  DA+   S+LSAC   G LE
Sbjct: 538 PASDRYACMIDLLGRAGKINEAE--------HLLNRMDVEPDATIWKSLLSACRVHGNLE 589

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G++   +  K+                     PS++            +LL+ M +V  
Sbjct: 590 LGERAGKNLIKLE--------------------PSNSLPY---------VLLSNMFSV-- 618

Query: 382 SCGRIEDAKHIFRTM--------PNKSLISWNSMI-VGLSQNGSPIEALDLFCNMNKL 430
             GR EDA HI R M        P  S I   S +   +S++ S   A +++  ++++
Sbjct: 619 -AGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEM 675



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 81/151 (53%)

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           ++ LL   SK G   +A KLF ++   D    N MI+ Y++ G + +A+ +F   P  + 
Sbjct: 40  SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNS 99

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           I+W+S++ G  +NG  +E L  F  M     +  +++L SV+ AC+ +S L  G+ +   
Sbjct: 100 ITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCY 159

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
              I L+++  ++T LVD Y KC  +   EY
Sbjct: 160 AIKIQLEANIFVATGLVDMYSKCKCLLEAEY 190



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 122/258 (47%), Gaps = 20/258 (7%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D RID      +L+S  +  ++ +G+ +H   +K G  ++   ++N L+ MY + GN + 
Sbjct: 332 DIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTG-FDACKTVSNALVDMYAKQGNLSC 390

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKAGE 118
           AL +F+++  ++  SW +++ G++  G  EK+LQLF ++   + D    ++   F+   E
Sbjct: 391 ALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAE 450

Query: 119 LKT---ARTLFNDMPRRNA----IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           L      R +  +  + +A     A NS+I  Y + G   +A+R+   + +        +
Sbjct: 451 LTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETR-------N 503

Query: 172 AFILATVIGACADLAALEYGKQ-IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
                 +I   A    +E G+    S   V G+   S   + +++L G+ G  N A  +L
Sbjct: 504 VISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLL 563

Query: 231 NMMK-EPDDFCLSALISG 247
           N M  EPD     +L+S 
Sbjct: 564 NRMDVEPDATIWKSLLSA 581


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 202/397 (50%), Gaps = 67/397 (16%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           LF +    +  + + LI+ +A+ G + +AR +F+++P R++++WNSMI  Y + G AREA
Sbjct: 148 LFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREA 207

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           V +F+E+     +  + D   L +++GAC +L  LE G+ +   ++  G+  +S +GS  
Sbjct: 208 VEVFREMGRR--DGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGS-- 263

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
                                        ALIS YA CG++  ARR+FD       + WN
Sbjct: 264 -----------------------------ALISMYAKCGELESARRIFDGMAARDVITWN 294

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           ++ISGY  N    EA+LLFH M+ + V  +  TL +VLSAC+++G L+ GKQ+  +A + 
Sbjct: 295 AVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQR 354

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G   D+ VA+AL+D Y+K                                G +++A+ +F
Sbjct: 355 GFQHDIFVATALIDMYAKS-------------------------------GSLDNAQRVF 383

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISS 451
           + MP K+  SWN+MI  L+ +G   EAL LF +M+      R +  +   ++SAC +   
Sbjct: 384 KDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGL 443

Query: 452 LELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ G ++F  + T+ GL       + +VD   + G +
Sbjct: 444 VDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHL 480


>gi|302760023|ref|XP_002963434.1| hypothetical protein SELMODRAFT_79700 [Selaginella moellendorffii]
 gi|300168702|gb|EFJ35305.1| hypothetical protein SELMODRAFT_79700 [Selaginella moellendorffii]
          Length = 575

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 215/433 (49%), Gaps = 44/433 (10%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I+  A LLQ C    ++  GK++H   L  G+    L +AN L+ MY +C +   A  +F
Sbjct: 71  INTYASLLQQCGNAGALAEGKRVHARILHLGLEADKL-VANFLILMYGKCKSVDLATQVF 129

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
           + MPRRN +S++ M++ F   G    + ++F+ MP + D SW  LISG+AK G L+ A  
Sbjct: 130 ERMPRRNDYSYSIMLQAFADCGQMRLAREVFDKMPLQADISWTALISGYAKNGFLEEAEA 189

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F  +PRR+ +AW +++  Y +NG A +A R F+ ++ D     Q D+    +V+ ACA 
Sbjct: 190 IFRKLPRRHFVAWTALVTAYAQNGQASKAFRTFQLMDLDGS---QPDSIAFISVLDACAT 246

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           + AL+ G+ +H  +    +  D+ + + L++LYG+C                        
Sbjct: 247 VFALDAGRLVHRTVADAAVSLDARVVNMLIHLYGRC------------------------ 282

Query: 245 ISGYANCGKMNDARRVFDRTTDTSS-----VMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                  G + +AR +FD+  + +      V WN+M++ Y  N    +AL +F  M   G
Sbjct: 283 -------GALREARSLFDKLDERNMPRRNLVSWNAMVTAYAENGRGKKALEIFRLMDLEG 335

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              D  T    L ACS++  L +G+ +H    +     D  V +ALL+ Y+K G   DA 
Sbjct: 336 TQADGFTYLGSLDACSTIPDLAYGRLIHAEIRESRSSGDPKVGNALLNLYAKCGHLRDAV 395

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNG 415
            LF+ + +      NTMI  ++  G  ++A  +F  +  + L    IS+ S++ G +  G
Sbjct: 396 ALFATMPMKILAAWNTMIGAFAQTGHGKEAIEVFEHLALEGLLPDEISFISVLSGCAYAG 455

Query: 416 SPIEALDLFCNMN 428
              + L +F ++ 
Sbjct: 456 IFKDGLRIFVSIT 468



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 161/401 (40%), Gaps = 106/401 (26%)

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + D    A+++  C +  AL  GK++H+ IL  GL+ D ++ + L+ +YGKC   + A Q
Sbjct: 68  RADINTYASLLQQCGNAGALAEGKRVHARILHLGLEADKLVANFLILMYGKCKSVDLATQ 127

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V   M   +D+  S ++  +A+CG+M  AR VFD+    + + W ++ISGY  N    EA
Sbjct: 128 VFERMPRRNDYSYSIMLQAFADCGQMRLAREVFDKMPLQADISWTALISGYAKNGFLEEA 187

Query: 289 LLLFHKMRR-------------------------------NGVLEDASTLASVLSACSSL 317
             +F K+ R                               +G   D+    SVL AC+++
Sbjct: 188 EAIFRKLPRRHFVAWTALVTAYAQNGQASKAFRTFQLMDLDGSQPDSIAFISVLDACATV 247

Query: 318 GFLEHGKQVHGHACKVGVIDDVIV----------------ASALLDTYSKRGMPS----- 356
             L+ G+ VH       V  D  V                A +L D   +R MP      
Sbjct: 248 FALDAGRLVHRTVADAAVSLDARVVNMLIHLYGRCGALREARSLFDKLDERNMPRRNLVS 307

Query: 357 ----------------------------------------DACKLFSELKVY-------- 368
                                                   DAC    +L           
Sbjct: 308 WNAMVTAYAENGRGKKALEIFRLMDLEGTQADGFTYLGSLDACSTIPDLAYGRLIHAEIR 367

Query: 369 ------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                 D  + N ++ +Y+ CG + DA  +F TMP K L +WN+MI   +Q G   EA++
Sbjct: 368 ESRSSGDPKVGNALLNLYAKCGHLRDAVALFATMPMKILAAWNTMIGAFAQTGHGKEAIE 427

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           +F ++    L  D+ S  SV+S CA     + G ++F  +T
Sbjct: 428 VFEHLALEGLLPDEISFISVLSGCAYAGIFKDGLRIFVSIT 468



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 39/233 (16%)

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK------ 351
           +G   D +T AS+L  C + G L  GK+VH     +G+  D +VA+ L+  Y K      
Sbjct: 65  DGCRADINTYASLLQQCGNAGALAEGKRVHARILHLGLEADKLVANFLILMYGKCKSVDL 124

Query: 352 -----RGMPSD--------------------ACKLFSELKVYDTILLNTMITVYSSCGRI 386
                  MP                      A ++F ++ +   I    +I+ Y+  G +
Sbjct: 125 ATQVFERMPRRNDYSYSIMLQAFADCGQMRLAREVFDKMPLQADISWTALISGYAKNGFL 184

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           E+A+ IFR +P +  ++W +++   +QNG   +A   F  M+    + D  +  SV+ AC
Sbjct: 185 EEAEAIFRKLPRRHFVAWTALVTAYAQNGQASKAFRTFQLMDLDGSQPDSIAFISVLDAC 244

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------FIKMDE 491
           A + +L+ G  V   V    +  D  +   L+  Y +CG        F K+DE
Sbjct: 245 ATVFALDAGRLVHRTVADAAVSLDARVVNMLIHLYGRCGALREARSLFDKLDE 297


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 226/491 (46%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +  + + GKQLH + +K G ++S L I   LL +Y++C +   A   F   
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMG-MSSDLIIEGSLLDLYVKCFDIETAHEYFLTT 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKS------LQLFNVMPQ--------------------- 100
              N   WN M+  + +LG+  +S      +Q+  +MP                      
Sbjct: 376 ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGE 435

Query: 101 -------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K+ F +N+     LI  +AK GEL TAR +   +   + ++W +MI  Y ++ 
Sbjct: 436 QIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHD 495

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF+E+ +   + ++ D    ++ I ACA + AL  G+QIH+   ++G   D  
Sbjct: 496 LFAEALKLFQEMEN---QGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLS 552

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV+LY                               A CG+  DA   F++     
Sbjct: 553 IGNALVSLY-------------------------------ARCGRAQDAYLAFEKIDAKD 581

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ WN++ISG+  +    EAL +F +M + GV  +  T  S +SA ++   ++ GKQ+H 
Sbjct: 582 NISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHA 641

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G  D    AS                              N +IT+YS CG IED
Sbjct: 642 MMIKTGY-DSETEAS------------------------------NVLITLYSKCGSIED 670

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK  F  MP K+++SWN+MI G SQ+G   EA+ LF  M +L L  +  +   V+SAC++
Sbjct: 671 AKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSH 730

Query: 449 ISSLELGEQVF 459
           +  +  G   F
Sbjct: 731 VGLVNEGLSYF 741



 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 228/520 (43%), Gaps = 105/520 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C       +G+QLH   +K G+ + T  + N L+ +Y R GN   A  +F +M
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETF-VCNALVTLYSRWGNLIAAEQIFSKM 274

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ--------------------- 100
            RR+  S+N++I G  + G  +++LQLF  M      P                      
Sbjct: 275 HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGK 334

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K   S +++I G     + K  +++TA   F      N + WN M+  Y + G
Sbjct: 335 QLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLG 394

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              E+  +F ++    +E L  + +   +++  C  L AL+ G+QIH+ ++ +G  F+  
Sbjct: 395 NLSESYWIFLQMQ---IEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S L+++Y K                                G+++ AR +  R  +  
Sbjct: 452 VCSVLIDMYAKH-------------------------------GELDTARGILQRLREED 480

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W +MI+GY  ++   EAL LF +M   G+  D    +S +SAC+ +  L  G+Q+H 
Sbjct: 481 VVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHA 540

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            +   G  +D+ + +AL+  Y++ G   DA   F ++   D I  N +I+ ++  G  E 
Sbjct: 541 QSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCE- 599

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                         EAL +F  MN+  +  + F+  S +SA AN
Sbjct: 600 ------------------------------EALQVFSQMNQAGVEANLFTFGSAVSATAN 629

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++++ G+Q+ A +   G DS+   S  L+  Y KCG I+
Sbjct: 630 TANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIE 669



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 223/515 (43%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L + C    S+   K+LH    K G     + + +RL+ +Y+  G   +A+ LFD++P  
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLAHGEVDNAIKLFDDIPSS 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS------------------- 105
           N   WN +I G +      + L LF      NV P ++ F+                   
Sbjct: 75  NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQI 134

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N LI  ++K G +  A+ +F  +  +++++W +MI    +NG  
Sbjct: 135 HAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGRE 194

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LF +++   V       ++ ++V+ AC  +   + G+Q+H  I+  GL  ++   
Sbjct: 195 DEAILLFCQMHKSAVIP---TPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSET--- 248

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                                       F  +AL++ Y+  G +  A ++F +      +
Sbjct: 249 ----------------------------FVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI 280

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            +NS+ISG         AL LF KM+ + +  D  T+AS+LSAC+S+G    GKQ+H + 
Sbjct: 281 SYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYV 340

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G+  D+I+  +LLD Y K                               C  IE A 
Sbjct: 341 IKMGMSSDLIIEGSLLDLYVK-------------------------------CFDIETAH 369

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
             F T   ++++ WN M+V   Q G+  E+  +F  M    L  ++++  S++  C ++ 
Sbjct: 370 EYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +L+LGEQ+  +V   G   +  + + L+D Y K G
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHG 464



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 183/388 (47%), Gaps = 67/388 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  +   GE+  A  LF+D+P  N   WN +I   +    A + + LF  +   + E +
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLM---ITENV 107

Query: 169 QCDAFILATVIGACAD-LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
             D    A+V+ AC+   A  +  +QIH+ I+ +G     ++ + L++LY K G      
Sbjct: 108 TPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNG------ 161

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                     ++ A+ VF+R     SV W +MISG   N  + E
Sbjct: 162 -------------------------HVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDE 196

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+LLF +M ++ V+      +SVLSAC+ +   + G+Q+HG   K G+  +         
Sbjct: 197 AILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE--------- 247

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
                                 T + N ++T+YS  G +  A+ IF  M  +  IS+NS+
Sbjct: 248 ----------------------TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSL 285

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I GL+Q G    AL LF  M    ++ D  ++AS++SACA++ +   G+Q+ + V  +G+
Sbjct: 286 ISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGM 345

Query: 468 DSDQIISTSLVDFYCKCGFIKM-DEYYL 494
            SD II  SL+D Y KC  I+   EY+L
Sbjct: 346 SSDLIIEGSLLDLYVKCFDIETAHEYFL 373



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 130/328 (39%), Gaps = 106/328 (32%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + +C    +++ G+Q+H      G  +  L I N L+ +Y RCG   DA L F+++  ++
Sbjct: 523 ISACAGIQALNQGQQIHAQSYISG-YSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKD 581

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW--------------------- 106
             SWNA+I GF + GH E++LQ+F+ M Q     N F++                     
Sbjct: 582 NISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHA 641

Query: 107 --------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN----- 147
                         N+LI+ ++K G ++ A+  F +MP +N ++WN+MI  Y ++     
Sbjct: 642 MMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSE 701

Query: 148 ------------------------------GFAREAVRLFKELNS--------------- 162
                                         G   E +  F+ ++                
Sbjct: 702 AVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVV 761

Query: 163 DLVER---------------LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           DL+ R               ++ DA I  T++ AC     +E G+    H+L    + DS
Sbjct: 762 DLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPE-DS 820

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                L N+Y   G ++  ++   MMK+
Sbjct: 821 ATYVLLSNMYAVSGKWDYRDRTRQMMKD 848



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 32/196 (16%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M   G+  +  T   +   C + G L   K++H    K G   + ++ S L+D       
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLID------- 53

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                   +Y + G +++A  +F  +P+ ++  WN +I GL   
Sbjct: 54  ------------------------IYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAK 89

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACAN-ISSLELGEQVFARVTIIGLDSDQII 473
               + L LF  M   ++  D+ + ASV+ AC+   +  ++ EQ+ A++   G  S  ++
Sbjct: 90  KLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLV 149

Query: 474 STSLVDFYCKCGFIKM 489
              L+D Y K G + +
Sbjct: 150 CNPLIDLYSKNGHVDL 165


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 146/524 (27%), Positives = 238/524 (45%), Gaps = 114/524 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L + C++  ++   +Q+H   + K  ++S     N LL   +   N T A LLF  +
Sbjct: 21  LVFLAKQCSSSKTL---QQVHAQMVVKSSIHSP---NNHLLSKAIHLKNFTYASLLFSHI 74

Query: 68  -PRRNCFSWNAMIEGF----------MKLGHKEKSLQL---------------------- 94
            P  N +++N MI             + L H+  SL L                      
Sbjct: 75  APHPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSP 134

Query: 95  --------FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                   F +    +  + + LI+ +++ G +  AR +F+++PRR+ ++WNSMI  Y +
Sbjct: 135 ARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAK 194

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G AREAV +F E+     +  + D   L +V+GAC +L  LE G+ +   ++  G+  +
Sbjct: 195 AGCAREAVEVFGEMGRR--DGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLN 252

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           S +GS                               ALIS YA CG +  ARR+FD    
Sbjct: 253 SYIGS-------------------------------ALISMYAKCGDLGSARRIFDGMAA 281

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              + WN++ISGY  N    EA+ LFH M+ + V E+  TL +VLSAC+++G L+ GKQ+
Sbjct: 282 RDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQI 341

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
             +A + G   D+ VA+AL+D Y+K                               CG +
Sbjct: 342 DEYASQRGFQHDIFVATALIDMYAK-------------------------------CGSL 370

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVIS 444
             A+ +F+ MP K+  SWN+MI  L+ +G   EAL LF  M+      R +  +   ++S
Sbjct: 371 ASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLS 430

Query: 445 ACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           AC +   +  G ++F  + T+ GL       + +VD   + G +
Sbjct: 431 ACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHL 474


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 195/390 (50%), Gaps = 72/390 (18%)

Query: 104 FSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           FSWN+     +++ +AK  ++  A  +F+ MP R+ + WN+MI  Y +NGFA+ A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
            ++    E  + D+  + +++ A AD   L  G  +H ++L  G +       SLVN+  
Sbjct: 121 RMSE---EGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFE-------SLVNVS- 169

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                                  +AL+  Y+ CG ++ AR +FD     + V WNSMI G
Sbjct: 170 -----------------------TALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDG 206

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y+ + +   A+L+F KM   GV     T+   L AC+ LG LE GK VH           
Sbjct: 207 YVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVH----------- 255

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
                                KL  +LK+  D  ++N++I++YS C R++ A  IF+ + 
Sbjct: 256 ---------------------KLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR 294

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           NK+L+SWN+MI+G +QNG   EAL+ FC M   +++ D F++ SVI A A +S     + 
Sbjct: 295 NKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKW 354

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +   V    LD +  + T+LVD Y KCG I
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAI 384



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 209/484 (43%), Gaps = 105/484 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +  G  +  L     ++ MY +C    DA  +FD MP R
Sbjct: 36  LLKLCGDNSDLKRGKEIHGSVITSG-FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER 94

Query: 71  NCFSWNAMIEGFMK----------------LGHKEKSLQLFNVMPQKND---FSWNMLIS 111
           +   WN MI G+ +                 GH+  S+ + +++P   D       M + 
Sbjct: 95  DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH 154

Query: 112 G--------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           G                    ++K G +  AR +F+ M  R  ++WNSMI  YV++G A 
Sbjct: 155 GYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAE 214

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ +F+++   L E +Q     +   + ACADL  LE GK +H   LV+ L  DS    
Sbjct: 215 GAMLIFQKM---LDEGVQPTNVTVMGALHACADLGDLERGKFVHK--LVDQLKLDS---- 265

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                    D   +++LIS Y+ C +++ A  +F    + + V 
Sbjct: 266 -------------------------DVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI GY  N    EAL  F +M+   +  D+ T+ SV+ A + L      K +HG   
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  +V V +AL+D Y+K G    A KLF  +                      +A+H
Sbjct: 361 RRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMM----------------------NARH 398

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +         I+WN+MI G   +G    +++LF  M K  ++ +  +    +SAC++   
Sbjct: 399 V---------ITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGL 449

Query: 452 LELG 455
           +E G
Sbjct: 450 VEEG 453



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 31/215 (14%)

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           M+ GY  ++    AL  F +M+ + V         +L  C     L+ GK++HG     G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                                      FS    ++   +  ++ +Y+ C +I DA ++F 
Sbjct: 61  ---------------------------FS----WNLFAMTGVVNMYAKCRQINDAYNMFD 89

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP + L+ WN+MI G +QNG    AL L   M++   R D  ++ S++ A A+   L +
Sbjct: 90  RMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI 149

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           G  V   V   G +S   +ST+LVD Y KCG + +
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSI 184


>gi|297844350|ref|XP_002890056.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335898|gb|EFH66315.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 221/434 (50%), Gaps = 39/434 (8%)

Query: 33  KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92
           K GI      + N ++ MY +  +   A  +FD++  R    WN MI G+ K G+KE++ 
Sbjct: 129 KMGIFKDPY-VRNVIMDMYAKHESVESARKVFDQITHRKGSDWNVMISGYWKYGNKEEAC 187

Query: 93  QLFNVMPQK--NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           +LF++MP+   +  SW ++I+GFAK  +L+ AR  F+ MP ++ ++WN+M+  Y +NGF 
Sbjct: 188 KLFDMMPEGKIDVVSWTVMITGFAKLKDLENARRCFDCMPEKSVVSWNAMLSGYSQNGFT 247

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            E +RLF ++   L   ++ +      VI AC+  A       +   I    +  +  + 
Sbjct: 248 EETLRLFNDM---LRLGVRPNETTWVIVISACSFRADPSLAHSLVKLIGEKRIRLNFFVK 304

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDARRVFDRTTDTSS 269
           ++L++++ KC D  SA ++ N +    +    +A+ISGY   G M+ AR++FD     + 
Sbjct: 305 TALLDMHAKCRDILSARRIFNELGTQKNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNV 364

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHG 328
           V WNS+I+GY  N +   A+  F  M   G    D  T+ SVLSAC  +G LE G     
Sbjct: 365 VSWNSVIAGYAHNGQPALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMGDLELG----- 419

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                    D IV     D   K+           ++K+ D+    ++I +Y+ CG + +
Sbjct: 420 ---------DCIV-----DYIGKK-----------QIKLNDS-GYRSLIFMYARCGNLWE 453

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK +F  M  + ++S+N++    + NG  ++ L+L   M    +  D+ +  SV++AC  
Sbjct: 454 AKRVFDEMKERDVVSYNTLFSAFAANGDGVKTLNLLSKMKDEGIEPDRVTYTSVLTACNR 513

Query: 449 ISSLELGEQVFARV 462
              LE G+++F  +
Sbjct: 514 AGLLEEGQRIFKSI 527



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 187/406 (46%), Gaps = 57/406 (14%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC----DAFILAT 177
           AR +F+ +   N    NSM   + +   A +A+RL+++       R +C    D F    
Sbjct: 59  ARLVFDSVTFPNVFLVNSMFRYFSQMDMANDALRLYEQ-------RSRCGIMPDTFFFPV 111

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           VI +     A ++G    + +   G+  D  + + ++++Y K     SA +V + +    
Sbjct: 112 VIKS-----AGKFGVLFQALVEKMGIFKDPYVRNVIMDMYAKHESVESARKVFDQITHRK 166

Query: 238 DFCLSALISGYANCGK---------------------------------MNDARRVFDRT 264
               + +ISGY   G                                  + +ARR FD  
Sbjct: 167 GSDWNVMISGYWKYGNKEEACKLFDMMPEGKIDVVSWTVMITGFAKLKDLENARRCFDCM 226

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            + S V WN+M+SGY  N    E L LF+ M R GV  + +T   V+SACS   F     
Sbjct: 227 PEKSVVSWNAMLSGYSQNGFTEETLRLFNDMLRLGVRPNETTWVIVISACS---FRADPS 283

Query: 325 QVHGHACKVG---VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-LNTMITVY 380
             H     +G   +  +  V +ALLD ++K      A ++F+EL     ++  N MI+ Y
Sbjct: 284 LAHSLVKLIGEKRIRLNFFVKTALLDMHAKCRDILSARRIFNELGTQKNLVTWNAMISGY 343

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSL 439
           +  G +  A+ +F TMP ++++SWNS+I G + NG P  A++ F +M +  D + D+ ++
Sbjct: 344 TRIGDMSSARQLFDTMPKRNVVSWNSVIAGYAHNGQPALAIEFFEDMIDYGDSKPDEVTM 403

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            SV+SAC ++  LELG+ +   +    +  +     SL+  Y +CG
Sbjct: 404 ISVLSACGHMGDLELGDCIVDYIGKKQIKLNDSGYRSLIFMYARCG 449


>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
           from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
           contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
           gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
           gb|AV533492 come from this gene [Arabidopsis thaliana]
          Length = 864

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 142/491 (28%), Positives = 228/491 (46%), Gaps = 76/491 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N L+   +R G+   A  +FD MP R+  SWNAMI+G+++    E++  LF  M +KN  
Sbjct: 276 NTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVV 335

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W  ++ G+ + G+++ A  LF +MP RN ++W +MI  +  N   REA+ LF E+  D 
Sbjct: 336 TWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKD- 394

Query: 165 VERLQCDAFILATVIGACADLAALEY---GKQIHSHILVNG---LDFDSVLGSSLVNLYG 218
           V+ +  +   L ++  AC  L  +E+   G+Q+H+ ++ NG   +D D  L  SLV++Y 
Sbjct: 395 VDAVSPNGETLISLAYACGGLG-VEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYA 453

Query: 219 KCGDFNSANQVLN------------------------------MMKEPDDFCLSALISGY 248
             G   SA  +LN                              +    D    +++I GY
Sbjct: 454 SSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGY 513

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
              G ++ A  +F +  D   V W  MISG + N    EA  L   M R G+    ST +
Sbjct: 514 LEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYS 573

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            +LS+  +   L+ GK +H                               C +      Y
Sbjct: 574 VLLSSAGATSNLDQGKHIH-------------------------------CVIAKTTACY 602

Query: 369 DT--ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
           D   IL N+++++Y+ CG IEDA  IF  M  K  +SWNSMI+GLS +G   +AL+LF  
Sbjct: 603 DPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKE 662

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCK 483
           M     + +  +   V+SAC++   +  G ++F        I    D  I  S++D   +
Sbjct: 663 MLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYI--SMIDLLGR 720

Query: 484 CGFIKMDEYYL 494
            G +K  E ++
Sbjct: 721 AGKLKEAEEFI 731



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 208/450 (46%), Gaps = 79/450 (17%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G   DA+ LFDEMP RN  SWN ++ G ++ G  EK+ Q+F+ MP ++  SWN +I G+ 
Sbjct: 255 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 314

Query: 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVR--------------------------NG 148
           +   ++ A+ LF DM  +N + W SM++ Y R                          +G
Sbjct: 315 ENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISG 374

Query: 149 FA-----REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY---GKQIHSHILV 200
           FA     REA+ LF E+  D V+ +  +   L ++  AC  L  +E+   G+Q+H+ ++ 
Sbjct: 375 FAWNELYREALMLFLEMKKD-VDAVSPNGETLISLAYACGGL-GVEFRRLGEQLHAQVIS 432

Query: 201 NG---LDFDSVLGSSLVNLYGKCGDFNSANQVLN-------------------------- 231
           NG   +D D  L  SLV++Y   G   SA  +LN                          
Sbjct: 433 NGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAET 492

Query: 232 ----MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
               +    D    +++I GY   G ++ A  +F +  D   V W  MISG + N    E
Sbjct: 493 LFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAE 552

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVIVASAL 345
           A  L   M R G+    ST + +LS+  +   L+ GK +H    K       D+I+ ++L
Sbjct: 553 AASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSL 612

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNK 399
           +  Y+K G   DA ++F+++   DT+  N+MI   S  G  + A ++F+ M      PN 
Sbjct: 613 VSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNS 672

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             +++  ++   S +G     L+LF  M +
Sbjct: 673 --VTFLGVLSACSHSGLITRGLELFKAMKE 700



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/490 (25%), Positives = 210/490 (42%), Gaps = 71/490 (14%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----WNMLISGFAKAGELKTART 124
           RR   +  A+I   +  G    +  L + +PQ+   +    W  L+S +AK G L  AR 
Sbjct: 142 RRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARV 201

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV------------------- 165
           LF  MP RN +  N+M+  YV+     EA  LF+E+  ++V                   
Sbjct: 202 LFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPKNVVSWTVMLTALCDDGRSEDAV 261

Query: 166 ----ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
               E  + +     T++        +E  KQ+   +       D V  ++++  Y +  
Sbjct: 262 ELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSR----DVVSWNAMIKGYIEND 317

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
               A  +   M E +    ++++ GY   G + +A R+F    + + V W +MISG+  
Sbjct: 318 GMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAW 377

Query: 282 NNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSLG--FLEHGKQVHGHACKVG--- 334
           N    EAL+LF +M++  + V  +  TL S+  AC  LG  F   G+Q+H      G   
Sbjct: 378 NELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWET 437

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSE--------------LK-------------- 366
           V  D  +A +L+  Y+  G+ + A  L +E              LK              
Sbjct: 438 VDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERV 497

Query: 367 --VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
             ++D +   +MI  Y   G +  A  +F+ + +K  ++W  MI GL QN    EA  L 
Sbjct: 498 KSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLL 557

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDFYC 482
            +M +  L+    + + ++S+    S+L+ G+ +   +  T    D D I+  SLV  Y 
Sbjct: 558 SDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYA 617

Query: 483 KCGFIKMDEY 492
           KCG I+ D Y
Sbjct: 618 KCGAIE-DAY 626



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           LL S     ++  GK +H    K     +  L + N L+ MY +CG   DA  +F +M +
Sbjct: 575 LLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQ 634

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTL 125
           ++  SWN+MI G    G  +K+L LF  M     + N  ++  ++S  + +G +     L
Sbjct: 635 KDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLEL 694

Query: 126 FNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKEL 160
           F  M    +I      + SMI    R G  +EA      L
Sbjct: 695 FKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISAL 734


>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
          Length = 788

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 157/566 (27%), Positives = 244/566 (43%), Gaps = 120/566 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             +LQ C     +  G+Q+H   LK G        I  +LL  Y +C     A  LF  +
Sbjct: 34  GEILQGCVYERDLCTGQQIHARILKNGDFYARNQYIETKLLIFYAKCDAIEVAQNLFSRL 93

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKNDFSWNMLIS 111
             RN FSW A+I    ++G  E +L  F                NV        W     
Sbjct: 94  RVRNVFSWAAIIGLKCRIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGR 153

Query: 112 G-----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           G                       + K G L  AR +F+ +P RN +AWN+++  YV+NG
Sbjct: 154 GVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVAWNALMVGYVQNG 213

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+RL  ++  + +E  +     ++T + A A++  +E GKQ H+  +VNGL+ D++
Sbjct: 214 MNEEAIRLLSDMRKEGIEPTR---VTVSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNI 270

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G    A  + + M E D    + LISGY   G ++D            
Sbjct: 271 LGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDD------------ 318

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                              A+ +   MR   +  D+ TL++++SA +    L+ GK+V  
Sbjct: 319 -------------------AIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQC 359

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC----- 383
           +  +     ++++AS  +D Y+K G   DA K+F      D IL NT++  Y+       
Sbjct: 360 YCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGE 419

Query: 384 ------------------------------GRIEDAKHIFRTM------PNKSLISWNSM 407
                                         G++++AK +F  M      PN  LISW +M
Sbjct: 420 ALRLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPN--LISWTTM 477

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + GL QNG   EA++    M +  LR + FS+   +SACA+++SL  G  +   + I  L
Sbjct: 478 MNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHLASLNFGRSIHGYI-IRNL 536

Query: 468 DSDQIIS--TSLVDFYCKCGFIKMDE 491
                +S  TSLVD Y KCG I   E
Sbjct: 537 QHSSSVSFVTSLVDMYAKCGDINQAE 562



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 232/499 (46%), Gaps = 89/499 (17%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H + +K G L+  + +A+ L  MY +CG   DA  +FD++P RN 
Sbjct: 141 KACGALQWTWFGRGVHGYLVKAG-LHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNV 199

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG-------------------- 112
            +WNA++ G+++ G  E++++L + M ++      + +S                     
Sbjct: 200 VAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSHAI 259

Query: 113 -------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                              + K G ++ A  +F+ M  ++ + WN +I  YV+ G   +A
Sbjct: 260 AIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISGYVQQGLVDDA 319

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + K +    +E L+ D+  L+T++ A A    L+ GK++  + + +  + + VL S+ 
Sbjct: 320 IHMCKLMR---LENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESEIVLASTA 376

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------------ 261
           V++Y KCG    A +V +   E D    + L++ YA+ G   +A R+F            
Sbjct: 377 VDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQLESVPPNM 436

Query: 262 ------------DRTTDTSSVM---------------WNSMISGYISNNEDTEALLLFHK 294
                       +   D +  M               W +M++G + N    EA+    K
Sbjct: 437 ITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAINFLRK 496

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRG 353
           M+ +G+  ++ ++   LSAC+ L  L  G+ +HG+  + +     V   ++L+D Y+K G
Sbjct: 497 MQESGLRPNSFSITVALSACAHLASLNFGRSIHGYIIRNLQHSSSVSFVTSLVDMYAKCG 556

Query: 354 MPSDACKLFSELKVYDTI-LLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMI 408
             + A K F   K+YD + L N MI+ Y+  G +++A  ++R + + ++    I++ S++
Sbjct: 557 DINQAEKAFGS-KLYDELPLYNAMISAYALYGNMKEAIALYRRLEDMAIKPDSITFTSLL 615

Query: 409 VGLSQNGSPIEALDLFCNM 427
              S  G  ++A+++F  M
Sbjct: 616 SACSHAGDIVQAINIFTEM 634



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 160/346 (46%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G  REA+RL KE+       ++    I   ++  C     L  G+QIH+ IL NG   
Sbjct: 7   KHGEIREALRLVKEME---FRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNG--- 60

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                           DF + NQ +           + L+  YA C  +  A+ +F R  
Sbjct: 61  ----------------DFYARNQYIE----------TKLLIFYAKCDAIEVAQNLFSRLR 94

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I           AL  F +M  NGVL D   + +V  AC +L +   G+ 
Sbjct: 95  VRNVFSWAAIIGLKCRIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGRG 154

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+  K G+ D V VAS+L D Y K G+ +DA K+F ++                    
Sbjct: 155 VHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKI-------------------- 194

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                      P +++++WN+++VG  QNG   EA+ L  +M K  +   + ++++ +SA
Sbjct: 195 -----------PERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSA 243

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            ANI  +E G+Q  A   + GL+ D I+ TS+++FYCK G ++  E
Sbjct: 244 SANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAE 289



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 19/163 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-----LLFDE 66
           L +C    S++ G+ +H + ++    +S++     L+ MY +CG+   A       L+DE
Sbjct: 513 LSACAHLASLNFGRSIHGYIIRNLQHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYDE 572

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTA 122
           +P      +NAMI  +   G+ ++++ L+  +     + +  ++  L+S  + AG++  A
Sbjct: 573 LPL-----YNAMISAYALYGNMKEAIALYRRLEDMAIKPDSITFTSLLSACSHAGDIVQA 627

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKEL 160
             +F +M  ++ +      +  M+     +G   +A+ L KE+
Sbjct: 628 INIFTEMVSKHGMKPCLEHYGLMVDLLASSGETNKALELIKEM 670


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 139/511 (27%), Positives = 230/511 (45%), Gaps = 107/511 (20%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H H  K G + S L + N L+ MY +CG+  DA L+FD M  R+  SWNAMI G  +
Sbjct: 254 KEVHKHAGKAGFI-SDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQ 312

Query: 85  LGHKEKSLQLFNVMPQKN-------------------DFSW------------------- 106
            G   ++  +F  M Q+                     + W                   
Sbjct: 313 NGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRV 372

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            +  +  + + G +  A+ +F+ +  RN   WN+MI    +    REA+ LF ++     
Sbjct: 373 GSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRR--- 429

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           E    DA     ++ A     ALE+ K++HS+ +  GL  D  +G++LV++Y K      
Sbjct: 430 EGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAK------ 482

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG    A++VFD   + +   W  MISG   +   
Sbjct: 483 -------------------------CGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCG 517

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA  LF +M R G++ DA+T  S+LSAC+S G LE  K+VH HA   G++ D+ V +AL
Sbjct: 518 HEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNAL 577

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y+K                               CG ++DA+ +F  M  + + SW 
Sbjct: 578 VHMYAK-------------------------------CGSVDDARRVFDDMLERDVYSWT 606

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI- 464
            MI GL+Q+G  ++ALDLF  M     + + +S  +V+SAC++   ++ G + F  +T  
Sbjct: 607 VMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQD 666

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
            G++      T +VD   + G ++  +++++
Sbjct: 667 YGIEPTMEHYTCMVDLLGRAGQLEEAKHFIL 697



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 232/525 (44%), Gaps = 113/525 (21%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            I YL+ +L++C +  S+  GK++H H ++ G   S + +   L+ MY++CG+  DA L+
Sbjct: 30  EITYLS-ILKACCSPVSLKWGKKIHAHIIQSG-FQSDVRVETALVNMYVKCGSIDDAQLI 87

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW------------- 106
           FD+M  RN  SW  MI G    G  +++   F  M ++    N +++             
Sbjct: 88  FDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGAL 147

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N L+  +AK+G +  AR +F+ M  R+  +W  MI   
Sbjct: 148 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGL 207

Query: 145 VRNGFAREAVRLFKELNSDLVERLQC----DAFILATVIGACADLAALEYGKQIHSHILV 200
            ++G  +EA  LF ++     ER  C      ++      A     ALE+ K++H H   
Sbjct: 208 AQHGRGQEAFSLFLQM-----ERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGK 262

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            G   D  +G++L+++Y K                               CG ++DAR V
Sbjct: 263 AGFISDLRVGNALIHMYAK-------------------------------CGSIDDARLV 291

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD   D   + WN+MI G   N    EA  +F KM++ G + D++T  S+L+   S G  
Sbjct: 292 FDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAW 351

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E  K+VH HA +VG++ D+ V SA +  Y +                             
Sbjct: 352 EWVKEVHKHAVEVGLVSDLRVGSAFVHMYIR----------------------------- 382

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG I+DA+ IF  +  +++ +WN+MI G++Q     EAL LF  M +     D  +  
Sbjct: 383 --CGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFV 440

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +++SA     +LE  ++V +     GL  D  +  +LV  Y KCG
Sbjct: 441 NILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCG 484



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 174/381 (45%), Gaps = 67/381 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L++ + K G +  A+ +F+ M  RN I+W  MI      G  +EA   F ++     E  
Sbjct: 71  LVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQR---EGF 127

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             +++   +++ A A   ALE+ K++HSH +  GL  D  +G++LV++Y K         
Sbjct: 128 IPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS-------- 179

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                  G ++DAR VFD   +     W  MI G   +    EA
Sbjct: 180 -----------------------GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEA 216

Query: 289 LLLFHKMRRNGVLEDASTLASVL--SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
             LF +M R G L + +T  S+L  SA +S G LE  K+VH HA K G I D+ V +AL+
Sbjct: 217 FSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALI 276

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y+K                               CG I+DA+ +F  M ++ +ISWN+
Sbjct: 277 HMYAK-------------------------------CGSIDDARLVFDGMCDRDVISWNA 305

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI GL+QNG   EA  +F  M +     D  +  S+++   +  + E  ++V      +G
Sbjct: 306 MIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVG 365

Query: 467 LDSDQIISTSLVDFYCKCGFI 487
           L SD  + ++ V  Y +CG I
Sbjct: 366 LVSDLRVGSAFVHMYIRCGSI 386



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 138/325 (42%), Gaps = 53/325 (16%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H + +  G+++  L + N L+ MY +CGN   A  +FD+M  RN  +W  MI G  +
Sbjct: 456 KEVHSYAIDAGLVD--LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQ 513

Query: 85  LGHKEKSLQLF------NVMPQKNDF-------------SW------------------- 106
            G   ++  LF       ++P    +              W                   
Sbjct: 514 HGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRV 573

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N L+  +AK G +  AR +F+DM  R+  +W  MI    ++G   +A+ LF ++    +
Sbjct: 574 GNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMK---L 630

Query: 166 ERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           E  + + +    V+ AC+    ++ G +Q  S     G++      + +V+L G+ G   
Sbjct: 631 EGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLE 690

Query: 225 SANQ-VLNMMKEPDDFCLSALISGYANCGKMNDA-----RRVFDRTTDTSSVMWNSMISG 278
            A   +LNM  EP D    AL+      G +  A      R+  +    S+ +  S I  
Sbjct: 691 EAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYA 750

Query: 279 YISNNEDTEALLLFHKMRRNGVLED 303
              N E  + LL+   M+R G+ ++
Sbjct: 751 ATGNWE--QKLLVRSMMQRRGIRKE 773



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  ++   K++H H +  G++ S L + N L+ MY +CG+  DA  +FD+M  R
Sbjct: 542 ILSACASTGALEWVKEVHSHAVNAGLV-SDLRVGNALVHMYAKCGSVDDARRVFDDMLER 600

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           + +SW  MI G  + G    +L LF  M     + N +S+  ++S  + AG +   R  F
Sbjct: 601 DVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQF 660


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 226/463 (48%), Gaps = 55/463 (11%)

Query: 10  RLLQS----CNTHHSIHVGKQLHLHFLKKGILNSTLP---IA--NRLLQMYMRCGNPTDA 60
           R++Q+     NT      G+   +H  +K   N+ LP   IA  N ++  Y     P DA
Sbjct: 12  RMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDA 71

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
           LLLFD+MP+RN  S+N MI G++K G    + ++F+VMP++N  SW  ++ G+ + G ++
Sbjct: 72  LLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVE 131

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            A  LF +MPRRN ++W  MI   ++     +A +LF     D++   + D  ++  +IG
Sbjct: 132 EAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLF-----DMIP--EKDVVVVTNMIG 184

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
               +  L+  +++   + V  +       +++V+ Y K G  + A ++  +M E ++  
Sbjct: 185 GYCQVGRLDEARELFDEMKVRNV----FTWTTMVSGYAKNGRVDVARKLFEVMPERNEVS 240

Query: 241 LSALISGYANCGKMND-------------------------------ARRVFDRTTDTSS 269
            +A++ GY   G+M +                               AR +F+   +   
Sbjct: 241 WTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDE 300

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN+MI  +     D EAL LF +M+R GV  +  ++ SVLS C+SL  L+HG+QVH  
Sbjct: 301 GTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHAR 360

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             +     D+ VAS L+  Y K G    A  +F+     D ++ N+MIT YS  G  E+A
Sbjct: 361 LVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEA 420

Query: 390 KHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMN 428
            ++F  M +  +    +++  ++   S +G   E  ++F  M 
Sbjct: 421 LNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMK 463



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 196/418 (46%), Gaps = 52/418 (12%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFN--VMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           R+  S  + I  + ++G    + ++F+   +PQ+   SWN ++S + ++ + + A  LF+
Sbjct: 17  RSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFD 76

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP+RN +++N MI  YV+NG   +A ++F     D++      ++  + V G   +   
Sbjct: 77  QMPQRNTVSFNGMISGYVKNGMVADARKVF-----DVMPERNVVSWT-SMVRGYVQEGMV 130

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            E  K        N + +  ++G  L     K    + A ++ +M+ E D   ++ +I G
Sbjct: 131 EEAEKLFWEMPRRNVVSWTVMIGGLL-----KESRIDDAKKLFDMIPEKDVVVVTNMIGG 185

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y   G++++AR +FD     +   W +M+SGY                 +NG ++ A  L
Sbjct: 186 YCQVGRLDEARELFDEMKVRNVFTWTTMVSGYA----------------KNGRVDVARKL 229

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             V+   + + +                       +A+L  Y++ G   +A +LF  + V
Sbjct: 230 FEVMPERNEVSW-----------------------TAMLMGYTQSGRMKEAFELFEAMPV 266

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
              +  N MI  +   G +  A+ +F  M  +   +WN+MI    + G  +EAL LF  M
Sbjct: 267 KWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARM 326

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  + ++  S+ SV+S CA+++SL+ G QV AR+     D D  +++ L+  Y KCG
Sbjct: 327 QREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCG 384


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 145/522 (27%), Positives = 237/522 (45%), Gaps = 82/522 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQM--YMRCGNPTDALLLFDEMP 68
           +LQSC++   +   KQ+  H    G++N   P A+RLL        G+   A L+FD+  
Sbjct: 58  ILQSCSSMFQL---KQIQAHITCTGLMNQIFP-ASRLLAFCALSDSGDIHYAHLIFDQTE 113

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND------------------------- 103
             NCF WN MI+G+ K  H       F  M +                            
Sbjct: 114 LPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMA 173

Query: 104 --------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                         F  N LI  + + G L  AR +F++   ++ + W +MI+ Y RN +
Sbjct: 174 VHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNW 233

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA+ LF   NS L   ++ +   +  ++ AC+     E GK +H HI    +     L
Sbjct: 234 LDEAIALF---NSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNL 290

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            ++++++Y KCG   +A ++ N M+  D F  ++L++GYA  G +  AR++FD   + + 
Sbjct: 291 LNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNI 350

Query: 270 VMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVH- 327
           V WN+MI+GY  N++  EAL LFH M    G++    TL  VLSA   LG LE G+++H 
Sbjct: 351 VSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHC 410

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            H  K+G+   +I+ +A++D Y+K G    A KLF  +   + +  N+MI+ Y+S G  +
Sbjct: 411 NHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAK 470

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                                          +AL LF  M    L+ D  +   V+SAC+
Sbjct: 471 -------------------------------KALTLFDQMIGSGLKPDHITFIGVLSACS 499

Query: 448 NISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIK 488
               +  G+  F  +    G++  +     +VD   + G +K
Sbjct: 500 YGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLK 541



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D L  +L +      + +G+++H + + K  +  +L + N ++ MY +CG+   A  LF 
Sbjct: 387 DTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFH 446

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKT 121
            MP +N  SWN+MI  +   GH +K+L LF+ M     + +  ++  ++S  +  G +  
Sbjct: 447 SMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSE 506

Query: 122 ARTLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
            +  F  M       P+R   A   M+    R G  +EA  L   +  +  E
Sbjct: 507 GQAHFESMENCFGVEPKREHYA--CMVDLLSRVGLLKEAYELISRMPMEASE 556


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 204/421 (48%), Gaps = 66/421 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++     S   G+ +H   +K G         N L+ MY++CG+ TDA LLFDEMP  
Sbjct: 132 VLKAYGLRPSYQEGRIVHGKLVKVGFCYDVF-TRNALIHMYLKCGSITDAHLLFDEMPNH 190

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N  +WN MI G    G  E++ +LF  MP++N  SWN ++ G++K G +  AR+LF+ MP
Sbjct: 191 NVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMP 250

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++W SMI  YV+NG A EA+ LFKE+   ++  +  D+ I+ +++ ACA + AL+ 
Sbjct: 251 ERDVVSWGSMISAYVQNGRAAEALELFKEM---MLAGVSADSIIITSILSACAQIGALDM 307

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ IH+++  + L  D  L ++LV++Y KCG  ++A  V N M    + C          
Sbjct: 308 GRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPR-KNLC---------- 356

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                WN+M+SG   +     AL LF +M   GV  +  T  +V
Sbjct: 357 --------------------SWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAV 396

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSACS +G +E G +      K   +D     +  ++ Y         C           
Sbjct: 397 LSACSHIGSVEEGWK------KFNQMDKEFNITPKVEHY--------GC----------- 431

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                M+ +    G I +AK + RTMP   +++ W +++     +G      D+   + K
Sbjct: 432 -----MVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQK 486

Query: 430 L 430
           L
Sbjct: 487 L 487



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 219/491 (44%), Gaps = 97/491 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPRR 70
           LQSC +   +   K++H   +  G +  T  IA + ++ Y       D A  +F  +   
Sbjct: 34  LQSCKSTEDL---KKIHAQLIITGQIKDTF-IATKTVESYAVSARNIDYAFWVFVGINYP 89

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           + +SW  MI GF++  + EK+L+ + +M Q+    N F++  ++  +      +  R + 
Sbjct: 90  DSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVH 149

Query: 127 NDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             + +     +    N++IH Y++ G   +A  LF E+ +        +     T+I  C
Sbjct: 150 GKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNH-------NVVTWNTMITGC 202

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
                                             +G CGD   A ++   M E +    +
Sbjct: 203 ----------------------------------FG-CGDTERARRLFGEMPERNVGSWN 227

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           A++ GY+  G ++ AR +FD   +   V W SMIS Y+ N    EAL LF +M   GV  
Sbjct: 228 AVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSA 287

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D+  + S+LSAC+ +G L+ G+ +H +  +  + +DV + +AL+D Y+K           
Sbjct: 288 DSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAK----------- 336

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                               CG I+ A  +F TMP K+L SWN+M+ GL+ +G    AL+
Sbjct: 337 --------------------CGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALE 376

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS------ 476
           LF  M    +  +  +  +V+SAC++I S+E G + F +     +D +  I+        
Sbjct: 377 LFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQ-----MDKEFNITPKVEHYGC 431

Query: 477 LVDFYCKCGFI 487
           +VD  C+ G I
Sbjct: 432 MVDILCRQGLI 442


>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g32415, mitochondrial; Flags: Precursor
 gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 142/491 (28%), Positives = 228/491 (46%), Gaps = 76/491 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N L+   +R G+   A  +FD MP R+  SWNAMI+G+++    E++  LF  M +KN  
Sbjct: 173 NTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVV 232

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W  ++ G+ + G+++ A  LF +MP RN ++W +MI  +  N   REA+ LF E+  D 
Sbjct: 233 TWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKD- 291

Query: 165 VERLQCDAFILATVIGACADLAALEY---GKQIHSHILVNG---LDFDSVLGSSLVNLYG 218
           V+ +  +   L ++  AC  L  +E+   G+Q+H+ ++ NG   +D D  L  SLV++Y 
Sbjct: 292 VDAVSPNGETLISLAYACGGLG-VEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYA 350

Query: 219 KCGDFNSANQVLN------------------------------MMKEPDDFCLSALISGY 248
             G   SA  +LN                              +    D    +++I GY
Sbjct: 351 SSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGY 410

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
              G ++ A  +F +  D   V W  MISG + N    EA  L   M R G+    ST +
Sbjct: 411 LEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYS 470

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            +LS+  +   L+ GK +H                               C +      Y
Sbjct: 471 VLLSSAGATSNLDQGKHIH-------------------------------CVIAKTTACY 499

Query: 369 DT--ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
           D   IL N+++++Y+ CG IEDA  IF  M  K  +SWNSMI+GLS +G   +AL+LF  
Sbjct: 500 DPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKE 559

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCK 483
           M     + +  +   V+SAC++   +  G ++F        I    D  I  S++D   +
Sbjct: 560 MLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYI--SMIDLLGR 617

Query: 484 CGFIKMDEYYL 494
            G +K  E ++
Sbjct: 618 AGKLKEAEEFI 628



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 204/449 (45%), Gaps = 77/449 (17%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G   DA+ LFDEMP RN  SWN ++ G ++ G  EK+ Q+F+ MP ++  SWN +I G+ 
Sbjct: 152 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 211

Query: 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS------------ 162
           +   ++ A+ LF DM  +N + W SM++ Y R G  REA RLF E+              
Sbjct: 212 ENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISG 271

Query: 163 ------------------DLVERLQCDAFILATVIGACADLAALEY---GKQIHSHILVN 201
                               V+ +  +   L ++  AC  L  +E+   G+Q+H+ ++ N
Sbjct: 272 FAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGL-GVEFRRLGEQLHAQVISN 330

Query: 202 G---LDFDSVLGSSLVNLYGKCGDFNSANQVLN--------------------------- 231
           G   +D D  L  SLV++Y   G   SA  +LN                           
Sbjct: 331 GWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETL 390

Query: 232 ---MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
              +    D    +++I GY   G ++ A  +F +  D   V W  MISG + N    EA
Sbjct: 391 FERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEA 450

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVIVASALL 346
             L   M R G+    ST + +LS+  +   L+ GK +H    K       D+I+ ++L+
Sbjct: 451 ASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLV 510

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKS 400
             Y+K G   DA ++F+++   DT+  N+MI   S  G  + A ++F+ M      PN  
Sbjct: 511 SMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNS- 569

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            +++  ++   S +G     L+LF  M +
Sbjct: 570 -VTFLGVLSACSHSGLITRGLELFKAMKE 597



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 127/499 (25%), Positives = 214/499 (42%), Gaps = 76/499 (15%)

Query: 65  DEMP-----RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----WNMLISGFAK 115
           D++P     RR   +  A+I   +  G    +  L + +PQ+   +    W  L+S +AK
Sbjct: 30  DKIPNYGSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAK 89

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV---------- 165
            G L  AR LF  MP RN +  N+M+  YV+     EA  LF+E+  ++V          
Sbjct: 90  TGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPKNVVSWTVMLTALC 149

Query: 166 -------------ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
                        E  + +     T++        +E  KQ+   +       D V  ++
Sbjct: 150 DDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSR----DVVSWNA 205

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           ++  Y +      A  +   M E +    ++++ GY   G + +A R+F    + + V W
Sbjct: 206 MIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSW 265

Query: 273 NSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSLG--FLEHGKQVHG 328
            +MISG+  N    EAL+LF +M++  + V  +  TL S+  AC  LG  F   G+Q+H 
Sbjct: 266 TAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHA 325

Query: 329 HACKVG---VIDDVIVASALLDTYSKRGMPSDACKLFSE--------------LK----- 366
                G   V  D  +A +L+  Y+  G+ + A  L +E              LK     
Sbjct: 326 QVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLE 385

Query: 367 -----------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                      ++D +   +MI  Y   G +  A  +F+ + +K  ++W  MI GL QN 
Sbjct: 386 RAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNE 445

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQII 473
              EA  L  +M +  L+    + + ++S+    S+L+ G+ +   +  T    D D I+
Sbjct: 446 LFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLIL 505

Query: 474 STSLVDFYCKCGFIKMDEY 492
             SLV  Y KCG I+ D Y
Sbjct: 506 QNSLVSMYAKCGAIE-DAY 523



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 27/259 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           LL S     ++  GK +H    K     +  L + N L+ MY +CG   DA  +F +M +
Sbjct: 472 LLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQ 531

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTL 125
           ++  SWN+MI G    G  +K+L LF  M     + N  ++  ++S  + +G +     L
Sbjct: 532 KDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLEL 591

Query: 126 FNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           F  M    +I      + SMI    R G  +EA      L          D  +   ++G
Sbjct: 592 FKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALP------FTPDHTVYGALLG 645

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGS---SLVNLYGKCGDFNSANQVLNMM---- 233
            C      +  + I     +  L+ D V      +L N+Y   G  +   ++   M    
Sbjct: 646 LCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIKG 705

Query: 234 --KEPDDFCLSALISGYAN 250
             K P   C   +++G AN
Sbjct: 706 VKKTPG--CSWVVVNGRAN 722


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 217/484 (44%), Gaps = 105/484 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    +  GK +H H +K G     + + +  + MY +C    DA+ LFDEMP R
Sbjct: 112 VLKACSGLGRVGYGKMVHTHVIKSGFAMDVV-VMSSAVGMYAKCNVFEDAIKLFDEMPER 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP-------------------------QKNDFS 105
           +  SWN +I  + + G  EK+L+LF  M                          +  +  
Sbjct: 171 DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH 230

Query: 106 WNMLISGFA--------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
             ++ SGFA              K G L+ A+ +F  + R+N ++WNSMI  Y   G ++
Sbjct: 231 MELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSK 290

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             + LF+ ++    E ++     L++++ AC+    L+ GK IH +I+ N ++ D  + S
Sbjct: 291 SCIELFRRMDE---EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNS 347

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL++LY K                               CG +  A  VF     T+ V 
Sbjct: 348 SLIDLYFK-------------------------------CGNIGSAENVFQNMPKTNVVS 376

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN MISGY+      EAL++F  MR+ GV  DA T  SVL ACS L  LE GK++H    
Sbjct: 377 WNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFII 436

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  + +V  ALLD Y+K G   +A  +F++L   D +   +MI  Y S         
Sbjct: 437 ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGS--------- 487

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                 +G   EAL LF  M + D + DK +  +++SAC++   
Sbjct: 488 ----------------------HGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGL 525

Query: 452 LELG 455
           ++ G
Sbjct: 526 VDEG 529



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 242/528 (45%), Gaps = 109/528 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MDT    L  LL++C     +  GK +H   +  G+ N+ + +   L+ +Y  C     A
Sbjct: 1   MDT--TKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNN-ITLCKSLINLYFSCHLFQSA 57

Query: 61  LLLFDEMPRR-NCFSWNAM----------IEG---FMKLGH----KEKSLQLFNVMPQ-- 100
            L+F  +    +   WN +          IEG   F +L H    K  +    +V+    
Sbjct: 58  KLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACS 117

Query: 101 ----------------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNS 139
                           K+ F+ ++++       +AK    + A  LF++MP R+  +WN+
Sbjct: 118 GLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNN 177

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I CY ++G   +A+ LF+E+    V   + D+  L TVI +CA L  LE GK+IH  ++
Sbjct: 178 VISCYYQDGQPEKALELFEEMK---VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELV 234

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
            +G   D  + S+LV++                               Y  CG +  A+ 
Sbjct: 235 RSGFALDGFVSSALVDM-------------------------------YGKCGCLEMAKE 263

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF++    + V WNSMI+GY    +    + LF +M   G+    +TL+S+L ACS    
Sbjct: 264 VFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVN 323

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ GK +HG+  +  V  D+ V S+L+D Y K                            
Sbjct: 324 LQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK---------------------------- 355

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              CG I  A+++F+ MP  +++SWN MI G  + GS +EAL +F +M K  ++ D  + 
Sbjct: 356 ---CGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITF 412

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            SV+ AC+ ++ LE G+++   +    L+ ++++  +L+D Y KCG +
Sbjct: 413 TSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAV 460



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 142/320 (44%), Gaps = 62/320 (19%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D   L +++  C D   L+ GK IH  I+  GL  +  L  SL+NLY  C  F SA  V 
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
             ++ P D  L                              WN +++    N    E L 
Sbjct: 62  QTIENPLDITL------------------------------WNGLMAACTKNFIFIEGLE 91

Query: 291 LFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
           +FH++     L+ DA T  SVL ACS LG + +GK VH H  K G   DV+V S+ +  Y
Sbjct: 92  VFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMY 151

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +K                               C   EDA  +F  MP + + SWN++I 
Sbjct: 152 AK-------------------------------CNVFEDAIKLFDEMPERDVASWNNVIS 180

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
              Q+G P +AL+LF  M     + D  +L +VIS+CA +  LE G+++   +   G   
Sbjct: 181 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 240

Query: 470 DQIISTSLVDFYCKCGFIKM 489
           D  +S++LVD Y KCG ++M
Sbjct: 241 DGFVSSALVDMYGKCGCLEM 260



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 74/355 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC     +  GK++H+  ++ G       +++ L+ MY +CG    A  +F+++
Sbjct: 210 LTTVISSCARLLDLERGKEIHMELVRSGFALDGF-VSSALVDMYGKCGCLEMAKEVFEQI 268

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
            R+N  SWN+MI G+   G  +  ++LF  M ++                          
Sbjct: 269 QRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGK 328

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + F  + LI  + K G + +A  +F +MP+ N ++WN MI  YV+ G
Sbjct: 329 FIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 388

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ +F ++    V+    DA    +V+ AC+ LA LE GK+IH+ I+ + L+ + V
Sbjct: 389 SYLEALVIFTDMRKAGVKP---DAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 445

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +  +L+++Y KCG  + A  + N + E D    +++I+ Y                    
Sbjct: 446 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG------------------- 486

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                       S+ +  EAL LF KM+++    D  T  ++LSACS  G ++ G
Sbjct: 487 ------------SHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEG 529



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 16/234 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    +  GK++H +F+ +  L     +   LL MY +CG   +AL +F+++P R
Sbjct: 415 VLPACSQLAVLEKGKEIH-NFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 473

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW +MI  +   G   ++L+LF  M Q     +  ++  ++S  + AG +      F
Sbjct: 474 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYF 533

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M            ++ +I    R G  REA  + +    D+ E    D  +L+T+  A
Sbjct: 534 NQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQR-TPDIRE----DVGLLSTLFSA 588

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     L+ G+QI   +L+     D      L N+Y     ++   +V   +KE
Sbjct: 589 CHLHKKLDLGEQI-GRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKE 641


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 203/392 (51%), Gaps = 14/392 (3%)

Query: 109 LISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSDLV 165
           L+S +A AG L+ +   F+ +P  RR+ +  N+MI  + R   A  AV +F+ L  SD  
Sbjct: 95  LVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASD-- 152

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS--LVNLYGKC--- 220
           + L+ D +   +++ A   +  L        H  V+ L   +VL  S  L+ LY KC   
Sbjct: 153 DSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAP 212

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G    A +VL+ M E D+   + ++ G+   G ++ AR  F+       V+WN+MISGY+
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG---VID 337
            +    EA  LF +M    +  D  T  S+LSAC++ GF  HGK VHG   ++    V +
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 338 DVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
             + V +AL+  YSK G  + A K+F  + + D +  NT+++ Y   G +++A  IF+ M
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEM 392

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P KS +SW  M+ G    G   +AL LF  M   D++   ++ A  ++AC  + +L+ G+
Sbjct: 393 PYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGK 452

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           Q+ A +   G ++      +L+  Y +CG +K
Sbjct: 453 QLHAHLVQCGFEASNSAGNALLTMYARCGAVK 484



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 217/490 (44%), Gaps = 71/490 (14%)

Query: 6   DY-LARLLQSCNTHHSIHVGK--QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           DY    LL +    H + V    QLH    K G   + L ++N L+ +YM+C  P     
Sbjct: 159 DYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGA-GAVLSVSNALIALYMKCDAP----- 212

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
                                  G    + ++ + MP+K++ +W  ++ G  + G++  A
Sbjct: 213 -----------------------GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAA 249

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R+ F ++     + WN+MI  YV++G   EA  LF+ + S   +R+  D F   +++ AC
Sbjct: 250 RSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVS---KRIPPDEFTFTSLLSAC 306

Query: 183 ADLAALEYGKQIHSHILVNGLDFDS----VLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           A+     +GK +H   +    DF       + ++LV LY K G    A ++ + M   D 
Sbjct: 307 ANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDV 366

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              + ++SGY   G +++A R+F      S + W  M+SGY+      +AL LF++MR  
Sbjct: 367 VSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSE 426

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V     T A  ++AC  LG L+HGKQ+H H  + G        +ALL  Y++ G   D 
Sbjct: 427 DVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKD- 485

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                         A+ +F  MPN   +SWN+MI  L Q+G   
Sbjct: 486 ------------------------------ARLVFLVMPNVDSVSWNAMISALGQHGHGR 515

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSL 477
           EAL+LF  M    +  D+ S  ++++AC +   ++ G Q F  +    G+   +     L
Sbjct: 516 EALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARL 575

Query: 478 VDFYCKCGFI 487
           +D   + G I
Sbjct: 576 IDLLGRAGRI 585



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 180/410 (43%), Gaps = 101/410 (24%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           LL +C N    +H GK +H  F++     +  + LP+ N L+ +Y + G    A  +FD 
Sbjct: 302 LLSACANAGFFLH-GKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDS 360

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           M  ++  SWN ++ G+++ G  + + ++F  MP K++ SW +++SG+             
Sbjct: 361 MTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGY------------- 407

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
                             V  G A +A++LF ++ S+ V+   CD +  A  + AC +L 
Sbjct: 408 ------------------VHGGLAEDALKLFNQMRSEDVK--PCD-YTYAGAVAACGELG 446

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL++GKQ+H+H++  G +  +  G++L+ +Y +CG                         
Sbjct: 447 ALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCG------------------------- 481

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
                  + DAR VF    +  SV WN+MIS    +    EAL LF +M   G+  D  +
Sbjct: 482 ------AVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRIS 535

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             ++L+AC+  G ++ G Q          ++     S   D Y++               
Sbjct: 536 FLTILTACNHAGLVDDGFQY------FESMERDFGISPGEDHYAR--------------- 574

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNG 415
                    +I +    GRI +A+ + +TMP +   + W +++ G   NG
Sbjct: 575 ---------LIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRING 615



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 22/314 (7%)

Query: 194 IHSHILVNGLDFDSV---LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           +H+ +L   L  D     L   L++LY    D   A   +    +P     ++L+S YA 
Sbjct: 44  LHARLLTAALLHDPSHPHLTLRLLHLYTLSPDL--ATPAVLFRADPGPVAATSLVSAYAV 101

Query: 251 CGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKM--RRNGVLEDAST 306
            G++ D+   FD        +V+ N+MIS +   +    A+ +F  +    + +  D  +
Sbjct: 102 AGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYS 161

Query: 307 LASVLSACSSLGFL--EHGKQVHGHACKVGVIDDVIVASALLDTYSK---RGMPSDACKL 361
             S+LSA   +  L   H  Q+H    K+G    + V++AL+  Y K    G+  DA K+
Sbjct: 162 FTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKV 221

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
             E+   D +   T++  +   G +  A+  F  +  +  + WN+MI G  Q+G   EA 
Sbjct: 222 LDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAF 281

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI------IST 475
           +LF  M    +  D+F+  S++SACAN      G+ V  +   I L  D +      ++ 
Sbjct: 282 ELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQ--FIRLQPDFVPEAALPVNN 339

Query: 476 SLVDFYCKCGFIKM 489
           +LV  Y K G I +
Sbjct: 340 ALVTLYSKSGKIAV 353



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C    ++  GKQLH H ++ G   S     N LL MY RCG   DA L+F
Sbjct: 432 DYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASN-SAGNALLTMYARCGAVKDARLVF 490

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----SWNMLISGFAKAGELK 120
             MP  +  SWNAMI    + GH  ++L+LF+ M  +  +    S+  +++    AG + 
Sbjct: 491 LVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVD 550

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                F  M R   I+     +  +I    R G   EA  L K +        +    I 
Sbjct: 551 DGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMP------FEPTPAIW 604

Query: 176 ATVIGACADLAALEYGKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
             ++  C     +E G      +  +V   D   +L   L N Y   G +  A +V  +M
Sbjct: 605 EAILSGCRINGDMELGAYAADQLFKMVPEHDGTYIL---LSNTYSAAGRWVDAARVRKLM 661

Query: 234 KE 235
           ++
Sbjct: 662 RD 663


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 217/484 (44%), Gaps = 105/484 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    +  GK +H H +K G     + + +  + MY +C    DA+ LFDEMP R
Sbjct: 304 VLKACSGLGRVGYGKMVHTHVIKSGFAMDVV-VMSSAVGMYAKCNVFEDAIKLFDEMPER 362

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP-------------------------QKNDFS 105
           +  SWN +I  + + G  EK+L+LF  M                          +  +  
Sbjct: 363 DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH 422

Query: 106 WNMLISGFA--------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
             ++ SGFA              K G L+ A+ +F  + R+N ++WNSMI  Y   G ++
Sbjct: 423 MELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSK 482

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             + LF+ ++    E ++     L++++ AC+    L+ GK IH +I+ N ++ D  + S
Sbjct: 483 SCIELFRRMDE---EGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNS 539

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL++LY K                               CG +  A  VF     T+ V 
Sbjct: 540 SLIDLYFK-------------------------------CGNIGSAENVFQNMPKTNVVS 568

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN MISGY+      EAL++F  MR+ GV  DA T  SVL ACS L  LE GK++H    
Sbjct: 569 WNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFII 628

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  + +V  ALLD Y+K G   +A  +F++L   D +   +MI  Y S         
Sbjct: 629 ESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGS--------- 679

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                 +G   EAL LF  M + D + DK +  +++SAC++   
Sbjct: 680 ----------------------HGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGL 717

Query: 452 LELG 455
           ++ G
Sbjct: 718 VDEG 721



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 187/375 (49%), Gaps = 65/375 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK    + A  LF++MP R+  +WN++I CY ++G   +A+ LF+E+    V   + D+
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK---VSGFKPDS 399

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
             L TVI +CA L  LE GK+IH  ++ +G   D  + S+LV++                
Sbjct: 400 VTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDM---------------- 443

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                          Y  CG +  A+ VF++    + V WNSMI+GY    +    + LF
Sbjct: 444 ---------------YGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELF 488

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            +M   G+    +TL+S+L ACS    L+ GK +HG+  +  V  D+ V S+L+D Y K 
Sbjct: 489 RRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK- 547

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                         CG I  A+++F+ MP  +++SWN MI G  
Sbjct: 548 ------------------------------CGNIGSAENVFQNMPKTNVVSWNVMISGYV 577

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           + GS +EAL +F +M K  ++ D  +  SV+ AC+ ++ LE G+++   +    L+ +++
Sbjct: 578 KVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 637

Query: 473 ISTSLVDFYCKCGFI 487
           +  +L+D Y KCG +
Sbjct: 638 VMGALLDMYAKCGAV 652



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 175/374 (46%), Gaps = 65/374 (17%)

Query: 119 LKTARTLFNDMPRRNAIA-WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            ++A+ +F  +     I  WN ++    +N    E + +F  L       L+ DAF   +
Sbjct: 246 FQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLH--FPYLKPDAFTYPS 303

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           V+ AC+ L  + YGK +H+H++ +G   D V+ SS V +Y K                  
Sbjct: 304 VLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK------------------ 345

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
                        C    DA ++FD   +     WN++IS Y  + +  +AL LF +M+ 
Sbjct: 346 -------------CNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           +G   D+ TL +V+S+C+ L  LE GK++H    + G   D  V+SAL+D Y K      
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGK------ 446

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                                    CG +E AK +F  +  K+++SWNSMI G S  G  
Sbjct: 447 -------------------------CGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDS 481

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
              ++LF  M++  +R    +L+S++ AC+   +L+LG+ +   +    +++D  +++SL
Sbjct: 482 KSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSL 541

Query: 478 VDFYCKCGFIKMDE 491
           +D Y KCG I   E
Sbjct: 542 IDLYFKCGNIGSAE 555



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 74/355 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ SC     +  GK++H+  ++ G       +++ L+ MY +CG    A  +F+++
Sbjct: 402 LTTVISSCARLLDLERGKEIHMELVRSGFALDGF-VSSALVDMYGKCGCLEMAKEVFEQI 460

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
            R+N  SWN+MI G+   G  +  ++LF  M ++                          
Sbjct: 461 QRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGK 520

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + F  + LI  + K G + +A  +F +MP+ N ++WN MI  YV+ G
Sbjct: 521 FIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 580

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ +F ++    V   + DA    +V+ AC+ LA LE GK+IH+ I+ + L+ + V
Sbjct: 581 SYLEALVIFTDMRKAGV---KPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 637

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +  +L+++Y KCG  + A  + N + E D    +++I+ Y                    
Sbjct: 638 VMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG------------------- 678

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                       S+ +  EAL LF KM+++    D  T  ++LSACS  G ++ G
Sbjct: 679 ------------SHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEG 721



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 131/300 (43%), Gaps = 62/300 (20%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH  I+  GL  +  L  SL+NLY  C  F SA  V   ++ P D  L         
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITL--------- 264

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLAS 309
                                WN +++    N    E L +FH++     L+ DA T  S
Sbjct: 265 ---------------------WNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPS 303

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL ACS LG + +GK VH H  K G   DV+V S+ +  Y+K  +  DA KLF E+   D
Sbjct: 304 VLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERD 363

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
               N +I+ Y                                Q+G P +AL+LF  M  
Sbjct: 364 VASWNNVISCY-------------------------------YQDGQPEKALELFEEMKV 392

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
              + D  +L +VIS+CA +  LE G+++   +   G   D  +S++LVD Y KCG ++M
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 16/234 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    +  GK++H +F+ +  L     +   LL MY +CG   +AL +F+++P R
Sbjct: 607 VLPACSQLAVLEKGKEIH-NFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER 665

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW +MI  +   G   ++L+LF  M Q     +  ++  ++S  + AG +      F
Sbjct: 666 DFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYF 725

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M            ++ +I    R G  REA  + +    D+ E    D  +L+T+  A
Sbjct: 726 NQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQR-TPDIRE----DVGLLSTLFSA 780

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     L+ G+QI   +L+     D      L N+Y     ++   +V   +KE
Sbjct: 781 CHLHKKLDLGEQI-GRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKE 833


>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
          Length = 763

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 147/520 (28%), Positives = 225/520 (43%), Gaps = 105/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L+ +C+   S+  G+++H H LK    +  L + N +L MY +CG+  DA  +FD MP
Sbjct: 67  AYLISACSYLRSLEHGRKIHDHMLKSKS-HPDLTLQNHILNMYGKCGSLKDAQKVFDAMP 125

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF------------------ 104
            RN  SW ++I G+ + G    +L+ +       VMP +  F                  
Sbjct: 126 ERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQ 185

Query: 105 ---------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                          + N LIS + K+  +  A  +F+ M  R+ I+W SMI  + + G+
Sbjct: 186 LHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGY 245

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA+  FKE+    V     + FI  +V  AC+ L   EYG+Q+H   +  GL  D   
Sbjct: 246 ELEALCYFKEMLHQGV--YLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFA 303

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G SL ++Y K                               CG ++ AR VF +      
Sbjct: 304 GCSLCDMYAK-------------------------------CGLLSCARVVFYQIGRPDL 332

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN++I+G+    +  EA+  F +MR  G++ D  T+ S+L AC+S   L  G QVHG+
Sbjct: 333 VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGY 392

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K+G+  DV V + LL  Y+K                               C  + DA
Sbjct: 393 INKMGLDLDVPVCNTLLTMYAK-------------------------------CSELRDA 421

Query: 390 KHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
              F  M  N  L+SWN+++     +    E   L   M     R D  +L +V+ A A 
Sbjct: 422 IFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAE 481

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             S+E+G QV       GL+ D  ++  L+D Y KCG +K
Sbjct: 482 TVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLK 521



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/527 (24%), Positives = 232/527 (44%), Gaps = 106/527 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C++   I +G+QLH H LK     + +   N L+ MY +     DAL +F  M  R
Sbjct: 170 IIKACSSLGDIGLGRQLHAHVLKSE-FGAHIIAQNALISMYTKSNVIIDALDVFSRMATR 228

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------------ 112
           +  SW +MI GF +LG++ ++L  F  M  +  +  N  I G                  
Sbjct: 229 DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQL 288

Query: 113 ----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                                 +AK G L  AR +F  + R + +AWN++I  +   G A
Sbjct: 289 HGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDA 348

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           +EA+  F ++     + L  D   + +++ AC   + L  G Q+H +I   GLD D  + 
Sbjct: 349 KEAIAFFSQMRH---QGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVC 405

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+ +Y KC +   A      M+     C + L+S                        
Sbjct: 406 NTLLTMYAKCSELRDAIFFFEEMR-----CNADLVS------------------------ 436

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++++  + +++  E   L   M  +    D  TL +VL A +    +E G QVH +A
Sbjct: 437 -WNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYA 495

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  D+ V + L+D Y+K                               CG ++ A+
Sbjct: 496 LKTGLNCDISVTNGLIDLYAK-------------------------------CGSLKTAR 524

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF ++ N  ++SW+S+I+G +Q G   EAL LF  M +LD++ +  +   V++AC+++ 
Sbjct: 525 KIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVG 584

Query: 451 SLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            +E G Q++  +    G+   +   + +VD   + G +   E ++ Q
Sbjct: 585 LVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCLNEAEAFIHQ 631



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 155/351 (44%), Gaps = 65/351 (18%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N  I    +     EA++ F+ L       L    +  A +I AC+ L +LE+G++IH H
Sbjct: 31  NEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTY--AYLISACSYLRSLEHGRKIHDH 88

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +L +    D  L + ++N+YGKC                               G + DA
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKC-------------------------------GSLKDA 117

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           ++VFD   + + V W S+I+GY  N +   AL  + +M ++GV+ D  T  S++ ACSSL
Sbjct: 118 QKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSL 177

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G +  G+Q+H H  K      +I  +AL+  Y+K  +                       
Sbjct: 178 GDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNV----------------------- 214

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DK 436
                   I DA  +F  M  + LISW SMI G SQ G  +EAL  F  M    + + ++
Sbjct: 215 --------IIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNE 266

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           F   SV SAC+++   E G Q+       GL  D     SL D Y KCG +
Sbjct: 267 FIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLL 317


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 142/536 (26%), Positives = 229/536 (42%), Gaps = 110/536 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP----IANRLLQMYMRCGN 56
           +   I   A +L +C+   ++  GK++H   +++ +L    P    + N ++QMY+RCG 
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGC 65

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS----- 105
              AL +FD M  +N  +W ++I  F   GH   ++ LF  M      P +  F+     
Sbjct: 66  TDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLK 125

Query: 106 W-----------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           W                             N+++  + K G+++ A  +F+ +   N  +
Sbjct: 126 WSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFS 185

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           W  +I  Y +NG   E +RL   +N   V   + D +   TV+GAC  + ALE  K +H+
Sbjct: 186 WTIIIAAYAQNGHCMEVLRLLSRMNQAGV---KPDGYTFTTVLGACTAVGALEEAKILHA 242

Query: 197 H-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             I   GLD D+ +G++L+NLYGKCG    A  V   +   D    S++I+ +A  G+  
Sbjct: 243 ATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAK 302

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                                           A+ L   M   GV  +  T  +VL A +
Sbjct: 303 S-------------------------------AIQLLMLMDLEGVRPNNVTFVNVLEAVT 331

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           SL   ++GK++H    + G  DDV + SAL+  Y   G    A  +F   +  D +  ++
Sbjct: 332 SLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSS 391

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           MI                                G SQN SP  AL LF  M    ++ +
Sbjct: 392 MIA-------------------------------GYSQNESPARALSLFREMEVDGVQPN 420

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             +  S I ACA + +L  G Q+  RV  +GLD D  ++T+LV+ Y KCG ++  E
Sbjct: 421 SVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAE 476



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 90/195 (46%), Gaps = 27/195 (13%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M    +  + S  A++L+ACS L  L  GK+VHG   +  ++ D                
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDE--------------- 45

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                      +  +++L N +I +Y  CG  + A  +F  M ++++++W S+I   +  
Sbjct: 46  -----------RPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFA 94

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASV-ISACANISSLELGEQVFARVTIIGLDSDQII 473
           G   +A+ LF  M    +  D+ +  S+ +       +L+ G++V + +   G + D+++
Sbjct: 95  GHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMV 154

Query: 474 STSLVDFYCKCGFIK 488
              +V+ Y KCG ++
Sbjct: 155 MNLVVEMYGKCGDVE 169


>gi|302801606|ref|XP_002982559.1| hypothetical protein SELMODRAFT_116559 [Selaginella moellendorffii]
 gi|300149658|gb|EFJ16312.1| hypothetical protein SELMODRAFT_116559 [Selaginella moellendorffii]
          Length = 465

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 140/492 (28%), Positives = 231/492 (46%), Gaps = 82/492 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLH--LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            A  L +C     +  G+++H  +H  K   ++  + I N L+ MY RCG+   A   F+
Sbjct: 34  FASALAACTHLGDLEHGRRIHERIHHSKIAGVHDVV-IGNALVTMYARCGDLVSAREFFE 92

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKT 121
            M  +N  SWNA+I  +++ GH  ++L+LF  M     + +    N L+S +AK GEL  
Sbjct: 93  GMREKNSMSWNAIISAYVQGGHPREALELFARMTGNGLKPDLIVQNALMSMYAKCGELDE 152

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           AR +F ++P R+  AW  ++  Y ++G    A+ L+  +     E+++ +A I +T+I A
Sbjct: 153 ARRIFFELPTRDVGAWACLMAGYAQHGDVARALELYNRMRD---EKVEANAAIFSTLIAA 209

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C   + L+ G+ +       G + D ++ +SLV +YGK G                    
Sbjct: 210 C---STLKEGELVRDLAFACGFEADPIVQASLVGMYGKHG-------------------- 246

Query: 242 SALISGYANCGKMNDARRVFD--RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                      K+ +ARR+FD     +     W+S+IS Y  +    EAL LF +M   G
Sbjct: 247 -----------KIEEARRIFDNIHGENKDVAAWSSIISAYARHGLTDEALRLFWRMVSRG 295

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           V  +A    SV+  C+S   LE GK VH    +    +D  V +AL+  Y K        
Sbjct: 296 VEPNAMIFKSVICCCASGEALEQGKAVHARLKESPSREDSAVQNALVGMYCK-------- 347

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                                  CG ++DA+  F     +   +W ++I+   Q   P +
Sbjct: 348 -----------------------CGSLDDARAAFDVTKRRDRHTWTTLIMAYVQKRKPEK 384

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL+L+  M   D+  D+F LASV +AC+++ SLE G  V +R   + L   +++ T+L+D
Sbjct: 385 ALELYHGM---DVEPDEFILASVAAACSSLGSLEQGMAVHSRAKSLELLGCEVLGTALLD 441

Query: 480 FYCKCGFIKMDE 491
            Y KC   ++DE
Sbjct: 442 MYVKCK--RLDE 451



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 179/386 (46%), Gaps = 77/386 (19%)

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS--- 196
           MI  YV +G   EA+ LF  LN +  +R+Q +  I A+ + AC  L  LE+G++IH    
Sbjct: 1   MIAGYVHHGRHGEALDLF--LNLECEQRIQPNRSIFASALAACTHLGDLEHGRRIHERIH 58

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--------------------- 235
           H  + G+  D V+G++LV +Y +CGD  SA +    M+E                     
Sbjct: 59  HSKIAGV-HDVVIGNALVTMYARCGDLVSAREFFEGMREKNSMSWNAIISAYVQGGHPRE 117

Query: 236 --------------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                         PD    +AL+S YA CG++++ARR+F          W  +++GY  
Sbjct: 118 ALELFARMTGNGLKPDLIVQNALMSMYAKCGELDEARRIFFELPTRDVGAWACLMAGYAQ 177

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           + +   AL L+++MR   V  +A+  +++++ACS+   L+ G+ V   A   G   D IV
Sbjct: 178 HGDVARALELYNRMRDEKVEANAAIFSTLIAACST---LKEGELVRDLAFACGFEADPIV 234

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--PNK 399
            ++L+  Y K                                G+IE+A+ IF  +   NK
Sbjct: 235 QASLVGMYGKH-------------------------------GKIEEARRIFDNIHGENK 263

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            + +W+S+I   +++G   EAL LF  M    +  +     SVI  CA+  +LE G+ V 
Sbjct: 264 DVAAWSSIISAYARHGLTDEALRLFWRMVSRGVEPNAMIFKSVICCCASGEALEQGKAVH 323

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCG 485
           AR+       D  +  +LV  YCKCG
Sbjct: 324 ARLKESPSREDSAVQNALVGMYCKCG 349



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 169/369 (45%), Gaps = 75/369 (20%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L   L + N L+ MY +CG   +A  +F E+P R+  +W  ++ G+ + G   ++L+L+N
Sbjct: 130 LKPDLIVQNALMSMYAKCGELDEARRIFFELPTRDVGAWACLMAGYAQHGDVARALELYN 189

Query: 97  VMP----QKNDFSWNMLISG--------------------------------FAKAGELK 120
            M     + N   ++ LI+                                 + K G+++
Sbjct: 190 RMRDEKVEANAAIFSTLIAACSTLKEGELVRDLAFACGFEADPIVQASLVGMYGKHGKIE 249

Query: 121 TARTLFNDM--PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            AR +F+++    ++  AW+S+I  Y R+G   EA+RLF  + S  VE    +A I  +V
Sbjct: 250 EARRIFDNIHGENKDVAAWSSIISAYARHGLTDEALRLFWRMVSRGVEP---NAMIFKSV 306

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           I  CA   ALE GK +H+ +  +    DS + ++LV +Y K                   
Sbjct: 307 ICCCASGEALEQGKAVHARLKESPSREDSAVQNALVGMYCK------------------- 347

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                       CG ++DAR  FD T       W ++I  Y+   +  +AL L+H M   
Sbjct: 348 ------------CGSLDDARAAFDVTKRRDRHTWTTLIMAYVQKRKPEKALELYHGM--- 392

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D   LASV +ACSSLG LE G  VH  A  + ++   ++ +ALLD Y K     +A
Sbjct: 393 DVEPDEFILASVAAACSSLGSLEQGMAVHSRAKSLELLGCEVLGTALLDMYVKCKRLDEA 452

Query: 359 CKLFSELKV 367
            KLF EL+ 
Sbjct: 453 RKLFWELQA 461


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 215/464 (46%), Gaps = 74/464 (15%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL--- 92
           I   T+   N +L  Y++      AL LFD MP R+  SWN M+    + G   ++L   
Sbjct: 199 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 258

Query: 93  ------------------------------------QLFNVMPQKNDFSWNMLISGFAKA 116
                                               Q+   +P  + +  + L+  +AK+
Sbjct: 259 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 318

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K A+ +FN +  RN +AW  +I  +++ G   E+V LF ++ ++L   +  D F LA
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL---MTLDQFALA 375

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C     L  G+Q+HS  L +G     V+ +SL+++Y KC +  SA  +   M E 
Sbjct: 376 TLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK 435

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    +++I+ Y+  G +  AR  FD  ++ + + WN+M+  YI +  + + L ++  M 
Sbjct: 436 DIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVML 495

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
               V  D  T  ++   C+ LG  + G Q+ G   KVG+I D  VA             
Sbjct: 496 SEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVA------------- 542

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N +IT+YS CGRI +A+ +F  +  K ++SWN+MI G SQ+G
Sbjct: 543 ------------------NAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHG 584

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
              +A+++F ++ K   + D  S  +V+S C++   ++ G+  F
Sbjct: 585 MGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYF 628



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 210/412 (50%), Gaps = 35/412 (8%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           A+++ F++ G  + + +LF  + +   F  N +++G+ K   +  A  LF+ MP R+ ++
Sbjct: 178 ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVS 237

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WN M+    ++G  REA+ +  ++ S  V   + D+    + + ACA L++L +GKQ+H+
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGV---RLDSTTYTSSLTACARLSSLRWGKQLHA 294

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
                                          QV+  +   D +  SAL+  YA  G   +
Sbjct: 295 -------------------------------QVIRNLPHIDPYVASALVELYAKSGCFKE 323

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A+ VF+   D ++V W  +ISG++     TE++ LF++MR   +  D   LA+++S C S
Sbjct: 324 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS 383

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
              L  G+Q+H    K G I  V+V+++L+  Y+K      A  +F  +   D +   +M
Sbjct: 384 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSM 443

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMD 435
           IT YS  G +  A+  F  M  K++I+WN+M+    Q+G+  + L ++  M ++  +R D
Sbjct: 444 ITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 503

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +  ++   CA++ + +LG+Q+  R   +GL  D  ++ +++  Y KCG I
Sbjct: 504 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRI 555



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 200/445 (44%), Gaps = 72/445 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A  L+ M++RCG    A  LF  +     F  N+M+ G++K    + +L+LF+ MP+++
Sbjct: 175 VAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 234

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDM-------------------PRRNAIAWNSMIHC 143
             SWNM++S  +++G ++ A  +  DM                    R +++ W   +H 
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHA 294

Query: 144 --------------------YVRNGFAREAVRLFKEL----------------------- 160
                               Y ++G  +EA  +F  L                       
Sbjct: 295 QVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 354

Query: 161 -----NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
                N    E +  D F LAT+I  C     L  G+Q+HS  L +G     V+ +SL++
Sbjct: 355 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y KC +  SA  +   M E D    +++I+ Y+  G +  AR  FD  ++ + + WN+M
Sbjct: 415 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAM 474

Query: 276 ISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +  YI +  + + L ++  M     V  D  T  ++   C+ LG  + G Q+ G   KVG
Sbjct: 475 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 534

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF- 393
           +I D  VA+A++  YSK G   +A K+F  L V D +  N MIT YS  G  + A  IF 
Sbjct: 535 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 594

Query: 394 ---RTMPNKSLISWNSMIVGLSQNG 415
              +       IS+ +++ G S +G
Sbjct: 595 DILKRGAKPDYISYVAVLSGCSHSG 619



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 218/479 (45%), Gaps = 68/479 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA--LLLFD 65
            A  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LLL D
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVG-LASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                                           +   N  + N++++G+AK G L  A  L
Sbjct: 66  --------------------------------IAHPNVITHNVMLNGYAKLGRLSDAVEL 93

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  MP R+  +WN+++  Y ++   +  V L   L+         +AF LA  + +C  L
Sbjct: 94  FGRMPARDVASWNTLMSGYFQS--RQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGAL 151

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
                  Q+ + +       DS + ++LV+++ +CG  + A+++   +KEP  FC ++++
Sbjct: 152 GWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSML 211

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           +GY     ++ A  +FD   +   V WN M+S    +    EAL +   M+  GV  D++
Sbjct: 212 AGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDST 271

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  S L+AC+ L  L  GKQ+H    +     D  VASAL++ Y+K G            
Sbjct: 272 TYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSG------------ 319

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                            C   ++AK +F ++ +++ ++W  +I G  Q G   E+++LF 
Sbjct: 320 -----------------C--FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFN 360

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            M    + +D+F+LA++IS C +   L LG Q+ +     G     ++S SL+  Y KC
Sbjct: 361 QMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 419



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 69/290 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C +   + +G+QLH   LK G + + + ++N L+ MY +C N   A       
Sbjct: 374 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV-VSNSLISMYAKCDNLQSAE------ 426

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                     +F  M +K+  SW  +I+ +++ G +  AR  F+
Sbjct: 427 -------------------------AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 461

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  +N I WN+M+  Y+++G   + +R++K + S+  E ++ D     T+   CADL A
Sbjct: 462 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSE--EYVRPDWVTYVTLFKGCADLGA 519

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK------------- 234
            + G QI    +  GL  D+ + ++++ +Y KCG    A +V + +              
Sbjct: 520 NKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITG 579

Query: 235 ----------------------EPDDFCLSALISGYANCGKMNDARRVFD 262
                                 +PD     A++SG ++ G + + +  FD
Sbjct: 580 YSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 629



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF-SE 364
             A  L +C + G L   + +HG    VG+   V + + LL  Y   G  SDA +L   +
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   + I  N M+  Y+  GR+ DA  +F  MP + + SWN+++ G  Q+   + +L+ F
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 425 CNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
            +M++  D   + F+LA  + +C  +    L  Q+ A V       D  ++ +LVD + +
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 185

Query: 484 CGFIKM 489
           CG + +
Sbjct: 186 CGAVDL 191


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 215/464 (46%), Gaps = 74/464 (15%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL--- 92
           I   T+   N +L  Y++      AL LFD MP R+  SWN M+    + G   ++L   
Sbjct: 219 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 278

Query: 93  ------------------------------------QLFNVMPQKNDFSWNMLISGFAKA 116
                                               Q+   +P  + +  + L+  +AK+
Sbjct: 279 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 338

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K A+ +FN +  RN +AW  +I  +++ G   E+V LF ++ ++L   +  D F LA
Sbjct: 339 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL---MTLDQFALA 395

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C     L  G+Q+HS  L +G     V+ +SL+++Y KC +  SA  +   M E 
Sbjct: 396 TLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK 455

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    +++I+ Y+  G +  AR  FD  ++ + + WN+M+  YI +  + + L ++  M 
Sbjct: 456 DIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVML 515

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
               V  D  T  ++   C+ LG  + G Q+ G   KVG+I D  VA             
Sbjct: 516 SEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVA------------- 562

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N +IT+YS CGRI +A+ +F  +  K ++SWN+MI G SQ+G
Sbjct: 563 ------------------NAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHG 604

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
              +A+++F ++ K   + D  S  +V+S C++   ++ G+  F
Sbjct: 605 MGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYF 648



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 210/412 (50%), Gaps = 35/412 (8%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           A+++ F++ G  + + +LF  + +   F  N +++G+ K   +  A  LF+ MP R+ ++
Sbjct: 198 ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVS 257

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WN M+    ++G  REA+ +  ++ S  V   + D+    + + ACA L++L +GKQ+H+
Sbjct: 258 WNMMVSALSQSGRVREALDMVVDMQSKGV---RLDSTTYTSSLTACARLSSLRWGKQLHA 314

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
                                          QV+  +   D +  SAL+  YA  G   +
Sbjct: 315 -------------------------------QVIRNLPHIDPYVASALVELYAKSGCFKE 343

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A+ VF+   D ++V W  +ISG++     TE++ LF++MR   +  D   LA+++S C S
Sbjct: 344 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS 403

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
              L  G+Q+H    K G I  V+V+++L+  Y+K      A  +F  +   D +   +M
Sbjct: 404 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSM 463

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMD 435
           IT YS  G +  A+  F  M  K++I+WN+M+    Q+G+  + L ++  M ++  +R D
Sbjct: 464 ITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 523

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +  ++   CA++ + +LG+Q+  R   +GL  D  ++ +++  Y KCG I
Sbjct: 524 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRI 575



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 200/445 (44%), Gaps = 72/445 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A  L+ M++RCG    A  LF  +     F  N+M+ G++K    + +L+LF+ MP+++
Sbjct: 195 VAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERD 254

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDM-------------------PRRNAIAWNSMIHC 143
             SWNM++S  +++G ++ A  +  DM                    R +++ W   +H 
Sbjct: 255 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHA 314

Query: 144 --------------------YVRNGFAREAVRLFKEL----------------------- 160
                               Y ++G  +EA  +F  L                       
Sbjct: 315 QVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 374

Query: 161 -----NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
                N    E +  D F LAT+I  C     L  G+Q+HS  L +G     V+ +SL++
Sbjct: 375 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 434

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y KC +  SA  +   M E D    +++I+ Y+  G +  AR  FD  ++ + + WN+M
Sbjct: 435 MYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAM 494

Query: 276 ISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +  YI +  + + L ++  M     V  D  T  ++   C+ LG  + G Q+ G   KVG
Sbjct: 495 LGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 554

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF- 393
           +I D  VA+A++  YSK G   +A K+F  L V D +  N MIT YS  G  + A  IF 
Sbjct: 555 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 614

Query: 394 ---RTMPNKSLISWNSMIVGLSQNG 415
              +       IS+ +++ G S +G
Sbjct: 615 DILKRGAKPDYISYVAVLSGCSHSG 639



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 218/479 (45%), Gaps = 68/479 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA--LLLFD 65
            A  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG  +DA  LLL D
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVG-LASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                                           +   N  + N++++G+AK G L  A  L
Sbjct: 86  --------------------------------IAHPNVITHNVMLNGYAKLGRLSDAVEL 113

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  MP R+  +WN+++  Y ++     ++  F  ++         +AF LA  + +C  L
Sbjct: 114 FGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRS--GDSWPNAFTLACAMKSCGAL 171

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
                  Q+ + +       DS + ++LV+++ +CG  + A+++   +KEP  FC ++++
Sbjct: 172 GWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSML 231

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           +GY     ++ A  +FD   +   V WN M+S    +    EAL +   M+  GV  D++
Sbjct: 232 AGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDST 291

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  S L+AC+ L  L  GKQ+H    +     D  VASAL++ Y+K G            
Sbjct: 292 TYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSG------------ 339

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                            C   ++AK +F ++ +++ ++W  +I G  Q G   E+++LF 
Sbjct: 340 -----------------C--FKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFN 380

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            M    + +D+F+LA++IS C +   L LG Q+ +     G     ++S SL+  Y KC
Sbjct: 381 QMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 439



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 69/290 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C +   + +G+QLH   LK G + + + ++N L+ MY +C N   A       
Sbjct: 394 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV-VSNSLISMYAKCDNLQSAE------ 446

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                     +F  M +K+  SW  +I+ +++ G +  AR  F+
Sbjct: 447 -------------------------AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 481

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  +N I WN+M+  Y+++G   + +R++K + S+  E ++ D     T+   CADL A
Sbjct: 482 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSE--EYVRPDWVTYVTLFKGCADLGA 539

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK------------- 234
            + G QI    +  GL  D+ + ++++ +Y KCG    A +V + +              
Sbjct: 540 NKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITG 599

Query: 235 ----------------------EPDDFCLSALISGYANCGKMNDARRVFD 262
                                 +PD     A++SG ++ G + + +  FD
Sbjct: 600 YSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 649



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF-SE 364
             A  L +C + G L   + +HG    VG+   V + + LL  Y   G  SDA +L   +
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   + I  N M+  Y+  GR+ DA  +F  MP + + SWN+++ G  Q+   + +L+ F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 425 CNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
            +M++  D   + F+LA  + +C  +    L  Q+ A V       D  ++ +LVD + +
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 205

Query: 484 CGFIKM 489
           CG + +
Sbjct: 206 CGAVDL 211


>gi|302775720|ref|XP_002971277.1| hypothetical protein SELMODRAFT_94780 [Selaginella moellendorffii]
 gi|300161259|gb|EFJ27875.1| hypothetical protein SELMODRAFT_94780 [Selaginella moellendorffii]
          Length = 650

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 229/492 (46%), Gaps = 73/492 (14%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D  A L++ C    ++  G+++H H  K G  +S L   N L+QM+ R G   DA     
Sbjct: 51  DTYAVLIRQCTLARAVPEGRRVHAHISKHGCRDSFL--LNLLVQMFGRFGCVADAS---- 104

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                                      ++F+ +P +N +SWN++++ FA+ G L+ AR  
Sbjct: 105 ---------------------------RVFDSIPARNCYSWNIMVAAFAQNGHLQQARIT 137

Query: 126 FNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           F+ MP   R+ I+W ++I  + +NG A  A++LF  ++ D +   + D     +VI AC+
Sbjct: 138 FDQMPPSDRSVISWTALITAHSQNGAAATAIQLFALMDLDGI---RADTITFVSVIDACS 194

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L  +++G  +H     +G +    + ++L ++YGK                        
Sbjct: 195 SLRRIDHGIAVHVEARESGTEMHYAVATALASMYGK------------------------ 230

Query: 244 LISGYANCGKMNDARRVFDRTTDTS--SVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                  C ++  ++ +FDR  + +  +V W +MI+ Y  + +  +AL +F  M  +G+ 
Sbjct: 231 -------CRRLERSKEMFDRMEERNMVTVSWGTMIAAYNQSGDPAKALEVFDAMEGDGIR 283

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA--C 359
            D     S L AC +LG L  G+++H       + +++IVA+ L+  Y K G   +A   
Sbjct: 284 PDKCVFVSALEACGALGDLAEGRKIHRRIATARMEENLIVANGLIAMYGKCGGVEEARAV 343

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            +F  L + D    N MIT Y+  G  + A+ +F  MP +++ISW  MI   + +G   E
Sbjct: 344 VVFDLLPLRDLAAWNAMITGYAQFGHSDPARELFDQMPERNVISWTGMISAYAYSGHRRE 403

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           A  LF  M+ L  R +K +    + ACA   +      + A+    G  SD  ++  L++
Sbjct: 404 AHYLFKAMDLLGQRPNKITYLKALEACAGGITAAEARTIHAKAIESGYSSDTQVAVGLLN 463

Query: 480 FYCKCGFIKMDE 491
            + KCG + + E
Sbjct: 464 LFEKCGSLAIAE 475



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 165/343 (48%), Gaps = 42/343 (12%)

Query: 152 EAVRLFKELNSDLVERLQ--CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           +AVR  +EL  D +E L    DA   A +I  C    A+  G+++H+HI  +G   DS L
Sbjct: 32  DAVR--REL--DRLEALDRAADADTYAVLIRQCTLARAVPEGRRVHAHISKHGCR-DSFL 86

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR--TTDT 267
            + LV ++G+ G    A++V + +   + +  + +++ +A  G +  AR  FD+   +D 
Sbjct: 87  LNLLVQMFGRFGCVADASRVFDSIPARNCYSWNIMVAAFAQNGHLQQARITFDQMPPSDR 146

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S + W ++I+ +  N     A+ LF  M  +G+  D  T  SV+ ACSSL  ++HG  VH
Sbjct: 147 SVISWTALITAHSQNGAAATAIQLFALMDLDGIRADTITFVSVIDACSSLRRIDHGIAVH 206

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             A + G      VA+AL   Y K                               C R+E
Sbjct: 207 VEARESGTEMHYAVATALASMYGK-------------------------------CRRLE 235

Query: 388 DAKHIFRTMPNKSL--ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            +K +F  M  +++  +SW +MI   +Q+G P +AL++F  M    +R DK    S + A
Sbjct: 236 RSKEMFDRMEERNMVTVSWGTMIAAYNQSGDPAKALEVFDAMEGDGIRPDKCVFVSALEA 295

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           C  +  L  G ++  R+    ++ + I++  L+  Y KCG ++
Sbjct: 296 CGALGDLAEGRKIHRRIATARMEENLIVANGLIAMYGKCGGVE 338



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 65/312 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C     +  G+++H   +    +   L +AN L+ MY +CG   +A           
Sbjct: 293 LEACGALGDLAEGRKIHRR-IATARMEENLIVANGLIAMYGKCGGVEEA----------- 340

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                             +++ +F+++P ++  +WN +I+G+A+ G    AR LF+ MP 
Sbjct: 341 ------------------RAVVVFDLLPLRDLAAWNAMITGYAQFGHSDPARELFDQMPE 382

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           RN I+W  MI  Y  +G  REA  LFK ++  L +R     ++ A  + ACA        
Sbjct: 383 RNVISWTGMISAYAYSGHRREAHYLFKAMDL-LGQRPNKITYLKA--LEACAGGITAAEA 439

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           + IH+  + +G   D+ +   L+NL+ KCG                              
Sbjct: 440 RTIHAKAIESGYSSDTQVAVGLLNLFEKCG------------------------------ 469

Query: 252 GKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
             +  A RVFD   +  +V+ W+ MIS Y  +     +L LF +M ++GV+    T+ ++
Sbjct: 470 -SLAIAERVFDDLGERKTVVAWSIMISAYAQSGRPWRSLELFTEMVQSGVMPTEITVVNL 528

Query: 311 LSACSSLGFLEH 322
           LSACS  GFL H
Sbjct: 529 LSACSHGGFLYH 540



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           +I YL + L++C    +    + +H   ++ G  +S   +A  LL ++ +CG+   A  +
Sbjct: 420 KITYL-KALEACAGGITAAEARTIHAKAIESG-YSSDTQVAVGLLNLFEKCGSLAIAERV 477

Query: 64  FDEM-PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           FD++  R+   +W+ MI  + + G   +SL+LF  M Q  
Sbjct: 478 FDDLGERKTVVAWSIMISAYAQSGRPWRSLELFTEMVQSG 517


>gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Glycine max]
          Length = 686

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 146/546 (26%), Positives = 237/546 (43%), Gaps = 132/546 (24%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+ C    +I   K LH   +K G+ N    + N ++ +Y +C    DA  LFDEMP RN
Sbjct: 10  LRCCGRFQAIKHAKSLHSLIIKLGLSNHIF-LLNSIISVYAKCSRFDDARTLFDEMPHRN 68

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSW-------------------- 106
             S+  M+  F   G   ++L L+N M      Q N F +                    
Sbjct: 69  IVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVH 128

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+  + K G L  A+ +F+++P +N+ +WN++I  + + G  R
Sbjct: 129 QHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMR 188

Query: 152 EAVRLFKEL-NSDLV--------------------------ERLQCDAFILATVIGACAD 184
           +A  LF ++   DLV                          + L+ DAF     + AC  
Sbjct: 189 DAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKACGL 248

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L  L  G+QIH  I+ +GL+      SSL+++                            
Sbjct: 249 LGELTMGRQIHCCIIKSGLECSCYCISSLIDM---------------------------- 280

Query: 245 ISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
              Y+NC  +++A ++FD+ +    S  +WNSM+SGY++N +   AL +   M  +G   
Sbjct: 281 ---YSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHHSGAQF 337

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D+ T +  L  C     L    QVHG     G   D +V S L+D Y+K+G  + A +LF
Sbjct: 338 DSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLF 397

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             L                               PNK +++W+S+IVG ++ G       
Sbjct: 398 ERL-------------------------------PNKDVVAWSSLIVGCARLGLGTLVFS 426

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           LF +M  LDL +D F L+ V+   ++++SL+ G+Q+ +     G +S+++I+T+L D Y 
Sbjct: 427 LFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYA 486

Query: 483 KCGFIK 488
           KCG I+
Sbjct: 487 KCGEIE 492



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 128/551 (23%), Positives = 206/551 (37%), Gaps = 140/551 (25%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG--------------- 55
           +L++C     + +G  +H H + +  L     + N LL MY++CG               
Sbjct: 111 VLKACGLVGDVELGMLVHQH-VSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCK 169

Query: 56  NPT----------------DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99
           N T                DA  LFD+MP  +  SWN++I G         +LQ  ++M 
Sbjct: 170 NSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLAD-NASPHALQFLSMMH 228

Query: 100 QK----NDFSWNMLISGFAKAGELKTARTLF----------------------------- 126
            K    + F++   +      GEL   R +                              
Sbjct: 229 GKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECSCYCISSLIDMYSNCKLLD 288

Query: 127 -------NDMPRRNAIA-WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
                   + P   ++A WNSM+  YV NG    A+ +   ++       Q D++  +  
Sbjct: 289 EAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHH---SGAQFDSYTFSIA 345

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +  C     L    Q+H  I+  G + D V+GS L++LY K G+                
Sbjct: 346 LKVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYAKQGN---------------- 389

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                          +N A R+F+R  +   V W+S+I G       T    LF  M   
Sbjct: 390 ---------------INSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHL 434

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            +  D   L+ VL   SSL  L+ GKQ+H    K G   + ++ +AL D Y+K       
Sbjct: 435 DLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYAK------- 487

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                   CG IEDA  +F  +     +SW  +IVG +QNG   
Sbjct: 488 ------------------------CGEIEDALALFDCLYEIDTMSWTGIIVGCAQNGRAD 523

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSL 477
           +A+ +   M +   + +K ++  V++AC +   +E    +F  + T  GL         +
Sbjct: 524 KAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCPEHYNCM 583

Query: 478 VDFYCKCGFIK 488
           VD + K G  K
Sbjct: 584 VDIFAKAGRFK 594



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 176/430 (40%), Gaps = 108/430 (25%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE-MPRR 70
           L++C     + +G+Q+H   +K G+  S   I++ L+ MY  C    +A+ +FD+  P  
Sbjct: 243 LKACGLLGELTMGRQIHCCIIKSGLECSCYCISS-LIDMYSNCKLLDEAMKIFDKNSPLA 301

Query: 71  NCFS-WNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNM----------------- 108
              + WN+M+ G++  G   ++L +   M     Q + +++++                 
Sbjct: 302 ESLAVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQV 361

Query: 109 ------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             LI  +AK G + +A  LF  +P ++ +AW+S+I    R G  
Sbjct: 362 HGLIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLG 421

Query: 151 REAVRLFKELNSDLVE-RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
                LF     D+V   L+ D F+L+ V+   + LA+L+ GKQIHS  L  G + + V+
Sbjct: 422 TLVFSLFM----DMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVI 477

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            ++L ++Y K                               CG++ DA  +FD   +  +
Sbjct: 478 TTALTDMYAK-------------------------------CGEIEDALALFDCLYEIDT 506

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W  +I G   N    +A+ + HKM  +G   +  T+  VL+AC   G +E    +   
Sbjct: 507 MSWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIF-- 564

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                         ++   +     P                  N M+ +++  GR ++A
Sbjct: 565 -------------KSIETEHGLTPCPEH---------------YNCMVDIFAKAGRFKEA 596

Query: 390 KHIFRTMPNK 399
           +++   MP K
Sbjct: 597 RNLINDMPFK 606



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 113/246 (45%), Gaps = 19/246 (7%)

Query: 1   MDTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +D  ID+  L+ +L+  ++  S+  GKQ+H   LKKG   S   I   L  MY +CG   
Sbjct: 434 LDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKG-YESERVITTALTDMYAKCGEIE 492

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFA 114
           DAL LFD +   +  SW  +I G  + G  +K++ + + M     + N  +   +++   
Sbjct: 493 DALALFDCLYEIDTMSWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACR 552

Query: 115 KAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
            AG ++ A T+F  +   + +      +N M+  + + G  +EA  L  ++        +
Sbjct: 553 HAGLVEEAWTIFKSIETEHGLTPCPEHYNCMVDIFAKAGRFKEARNLINDM------PFK 606

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D  I  +++ AC           +  H+L    + D+ +   L N+Y   G +++ ++V
Sbjct: 607 PDKTIWCSLLDACGTYKNRHLANIVAEHLLATSPE-DASVYIMLSNVYASLGMWDNLSKV 665

Query: 230 LNMMKE 235
              +++
Sbjct: 666 REAVRK 671



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 30/183 (16%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D + +   L  C     ++H K +H    K+G+ + + + ++++  Y+K     DA  LF
Sbjct: 2   DLNQIQLALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLF 61

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            E+   + +   TM++ +++ GR           P+++L  +N M+   S+   P     
Sbjct: 62  DEMPHRNIVSFTTMVSAFTNSGR-----------PHEALTLYNHMLE--SKTVQP----- 103

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
                       ++F  ++V+ AC  +  +ELG  V   V+   L+ D ++  +L+D Y 
Sbjct: 104 ------------NQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYV 151

Query: 483 KCG 485
           KCG
Sbjct: 152 KCG 154



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 73/365 (20%), Positives = 136/365 (37%), Gaps = 77/365 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+ C    ++ +  Q+H   + +G     + + + L+ +Y + GN   AL LF+ +P ++
Sbjct: 346 LKVCIYFDNLRLASQVHGLIITRGYELDHV-VGSILIDLYAKQGNINSALRLFERLPNKD 404

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------KNDFSWNMLISG----- 112
             +W+++I G  +LG       LF  M                K   S   L SG     
Sbjct: 405 VVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHS 464

Query: 113 --------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                               +AK GE++ A  LF+ +   + ++W  +I    +NG A +
Sbjct: 465 FCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTMSWTGIIVGCAQNGRADK 524

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-NGLDFDSVLGS 211
           A+ +  ++   +    + +   +  V+ AC     +E    I   I   +GL       +
Sbjct: 525 AISILHKM---IESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCPEHYN 581

Query: 212 SLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
            +V+++ K G F  A  ++N M  +PD     +L+         + A  V +    TS  
Sbjct: 582 CMVDIFAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYKNRHLANIVAEHLLATSP- 640

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
                                          EDAS    + +  +SLG  ++  +V    
Sbjct: 641 -------------------------------EDASVYIMLSNVYASLGMWDNLSKVREAV 669

Query: 331 CKVGV 335
            KVG+
Sbjct: 670 RKVGI 674


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 216/434 (49%), Gaps = 42/434 (9%)

Query: 34  KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR----RNCFSWNAMIEGFMKLGHKE 89
           K I    L I N +++ + + GN    L+LF ++       + F++  + +    LG   
Sbjct: 95  KYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVS 154

Query: 90  KSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           K+ +L  ++ +     + +  N LI  +A+       + LF++MP R+ I+WN MI  YV
Sbjct: 155 KAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYV 214

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +     +A+ +F  +  +    L  D   + + + AC  L  LE GK+IH H + + + F
Sbjct: 215 KCRRFEDAINVFCRMQEE--SGLMPDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKF 271

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
             ++G++L+++Y KCG  + A  V   M   +  C + ++SGYANCG++ +AR +F+ + 
Sbjct: 272 TPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSP 331

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V+W +MI+GY+  N   EA+ LF +M+   V  D   + S+L+ C+  G +E GK 
Sbjct: 332 IRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKW 391

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H    +  +  D +V +AL++ Y+K G    A ++F  L+V DT               
Sbjct: 392 IHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDT--------------- 436

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                            SW S+I GL+ NG   +AL+LF  M +  +R D  +   V+SA
Sbjct: 437 ----------------ASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSA 480

Query: 446 CANISSLELGEQVF 459
           C++   +E G + F
Sbjct: 481 CSHGGLVEEGRKFF 494



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 208/436 (47%), Gaps = 46/436 (10%)

Query: 56  NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115
           NPT  L       +++C S+    +    L  K+   Q+F V   ++  S N L++    
Sbjct: 30  NPTTGL------SQQSCISYLKSCKSMTHL--KQIHAQIFRVGLHQDIVSLNKLMAFCTD 81

Query: 116 A--GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
              G L  A  +F  +     + +N +I  + + G  +  + LF +L  D    L  D F
Sbjct: 82  PFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLRED---GLWPDNF 138

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
               V  A   L  +   +++   +   GL+FD+ + +SL+++Y +     +   V+ M+
Sbjct: 139 TYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQL----ALTDVMKML 194

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                                      FD   D   + WN MISGY+      +A+ +F 
Sbjct: 195 ---------------------------FDEMPDRDVISWNVMISGYVKCRRFEDAINVFC 227

Query: 294 KMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           +M+  +G++ D +T+ S LSAC++L  LE GK++H H  +  V    I+ +ALLD Y K 
Sbjct: 228 RMQEESGLMPDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKC 286

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G  S A  +F E+   + I   TM++ Y++CG +E+A+ +F   P + ++ W +MI G  
Sbjct: 287 GCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYV 346

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q     EA+ LF  M    ++ DKF + S+++ CA   ++E G+ +   +    +  D +
Sbjct: 347 QFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAV 406

Query: 473 ISTSLVDFYCKCGFIK 488
           + T+L++ Y KCGFI+
Sbjct: 407 VGTALIEMYAKCGFIE 422



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 145/314 (46%), Gaps = 67/314 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     + +GK++H H+++  +  + + I N LL MY +CG  + A  +F+EMP +N
Sbjct: 246 LSACTALKRLELGKKIH-HYVRDNVKFTPI-IGNALLDMYCKCGCLSIARAVFEEMPSKN 303

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
              W  M+ G+   G  E++ +LF   P ++   W  +I+G+ +          FN    
Sbjct: 304 VICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQ----------FNRFD- 352

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
                               EAV LF+E+    + +++ D FI+ +++  CA   A+E G
Sbjct: 353 --------------------EAVALFREMQ---IRKVKPDKFIVVSLLTGCAQTGAIEQG 389

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K IH  I  N +  D+V+G++L+ +Y KCG    A ++   ++  D    +++I G A  
Sbjct: 390 KWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMN 449

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           GK                                ++AL LF KM++ GV  D  T   VL
Sbjct: 450 GKT-------------------------------SKALELFSKMKQAGVRPDDITFIGVL 478

Query: 312 SACSSLGFLEHGKQ 325
           SACS  G +E G++
Sbjct: 479 SACSHGGLVEEGRK 492


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 242/528 (45%), Gaps = 106/528 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y ++LL  C T  S+  G Q+H H  K G L+    I N L+ +Y +C N   A  
Sbjct: 55  TSVSY-SKLLSQCCTTKSLRPGLQIHAHITKSG-LSDDPSIRNHLINLYSKCRNFGYARK 112

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWN----------- 107
           L DE    +  SW+A+I G+ + G    +L  F+ M     + N+F+++           
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD 172

Query: 108 ----------MLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                     +++SGF              AK  E   ++ LF+++P RN ++WN++  C
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           YV+  F  EAV LF E+   ++  ++ + F L++++ AC  L     GK IH +++  G 
Sbjct: 233 YVQIDFCGEAVGLFYEM---VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D+D    ++LV++Y K GD   A  V   +K+PD                          
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPD-------------------------- 323

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 V WN++I+G + +    +AL L  +M+R+G+  +  TL+S L AC+ +G  E G
Sbjct: 324 -----IVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELG 378

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +Q+H    K+ +  D+ V+  L+D YSK  +  DA   F+ L   D I            
Sbjct: 379 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLI------------ 426

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
                              +WN++I G SQ    +EAL LF  M+K  +  ++ +L++++
Sbjct: 427 -------------------AWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 467

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            + A +  + +  QV       G  SD  +  SL+D Y KC  ++  E
Sbjct: 468 KSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAE 515



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 235/520 (45%), Gaps = 107/520 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L++C+    + +GKQ+H   +  G       +AN L+ MY +C    D+  LFDE+
Sbjct: 160 FSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVF-VANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK-------------------- 101
           P RN  SWNA+   ++++    +++ LF       + P +                    
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + FS N L+  +AK G+L  A ++F  + + + ++WN++I   V + 
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 149 FAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
              +A+ L  ++    +    C + F L++ + ACA +   E G+Q+HS           
Sbjct: 339 HHEQALELLGQMKRSGI----CPNIFTLSSALKACAGMGLKELGRQLHS----------- 383

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                ++ M  E D F    L+  Y+ C  + DAR  F+   + 
Sbjct: 384 --------------------SLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK 423

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             + WN++ISGY    ED EAL LF +M + G+  + +TL+++L + + L  +   +QVH
Sbjct: 424 DLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVH 483

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G + K G   D+ V ++L+D+Y K     DA ++F E  + D +   +MIT Y+  G+ E
Sbjct: 484 GLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGE 543

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                                          EAL LF  M  ++L+ D+F  +S+++ACA
Sbjct: 544 -------------------------------EALKLFLEMQDMELKPDRFVCSSLLNACA 572

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           N+S+ E G+Q+   +   G   D     SLV+ Y KCG I
Sbjct: 573 NLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSI 612



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 211/478 (44%), Gaps = 105/478 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ +C        GK +H + +K G        AN L+ MY + G+  DA+ +F+++
Sbjct: 261 LSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS-ANALVDMYAKVGDLADAISVFEKI 319

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
            + +  SWNA+I G +   H E++L+L   M +                           
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGR 379

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K D   ++ +S      ++K   L+ AR  FN +P ++ IAWN++I  Y +  
Sbjct: 380 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 439

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF E++    E +  +   L+T++ + A L  +   +Q+H   + +G   D  
Sbjct: 440 EDMEALSLFVEMHK---EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIY 496

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +SL++ YGK                               C  + DA R+F+  T   
Sbjct: 497 VVNSLIDSYGK-------------------------------CSHVEDAERIFEECTIGD 525

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V + SMI+ Y    +  EAL LF +M+   +  D    +S+L+AC++L   E GKQ+H 
Sbjct: 526 LVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHV 585

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  K G + D+   ++L++ Y+K G   DA + FSEL                       
Sbjct: 586 HILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT---------------------- 623

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                     + ++SW++MI GL+Q+G   +AL LF  M K  +  +  +L SV+ AC
Sbjct: 624 ---------ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGAC 672



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 31/202 (15%)

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
           ++D +   + + + +      + + + +LS C +   L  G Q+H H  K G+ DD    
Sbjct: 35  SQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDD---- 90

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
                       PS               + N +I +YS C     A+ +        L+
Sbjct: 91  ------------PS---------------IRNHLINLYSKCRNFGYARKLVDESSEPDLV 123

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW+++I G +QNG    AL  F  M+ L ++ ++F+ +SV+ AC+ +  L +G+QV   V
Sbjct: 124 SWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVV 183

Query: 463 TIIGLDSDQIISTSLVDFYCKC 484
            + G + D  ++ +LV  Y KC
Sbjct: 184 VVSGFEGDVFVANTLVVMYAKC 205



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 21/238 (8%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + LL +C    +   GKQLH+H LK G +       N L+ MY +CG+  DA   F E+ 
Sbjct: 565 SSLLNACANLSAFEQGKQLHVHILKYGFVLDIFA-GNSLVNMYAKCGSIDDAGRAFSELT 623

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTART 124
            R   SW+AMI G  + GH  ++LQLFN M ++    N  +   ++     AG +  A+ 
Sbjct: 624 ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKL 683

Query: 125 LFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            F  M       P +   A   MI    R G   EAV L  ++        + +A +   
Sbjct: 684 YFESMEELFGFKPMQEHYA--CMIDLLGRAGKINEAVELVNKMP------FEANASVWGA 735

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           ++GA      +E G++    + +   +  S     L N+Y   G + +  +V  +M++
Sbjct: 736 LLGAARIHKDVELGRRAAEMLFILEPE-KSGTHVLLANIYASAGKWENVAEVRRLMRD 792


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 187/362 (51%), Gaps = 44/362 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C     +   + +H H  + G  +S + +   L+  Y   G   +++ +FDEMP R
Sbjct: 86  LIKACGLVSQLRFAEAVHGHVWRNG-FDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPER 144

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F+W  M+ G +++G    + +LF++MP +N  +WN LI G+A+  E+  A  LFN MP
Sbjct: 145 DVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMP 204

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ I+W +MI+CY +N   REA+ +F E+       +  D   +ATVI ACA L AL+ 
Sbjct: 205 ARDIISWTTMINCYSQNKRFREALGVFNEMAK---HGISPDEVTMATVISACAHLGALDL 261

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK+IH +I+ +G + D  +GS+L+++Y KCG  + +  +   ++E + FC +++I G A 
Sbjct: 262 GKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLA- 320

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                    + GY       EAL +F KM R  +  +  T  SV
Sbjct: 321 -------------------------VHGYAE-----EALAMFDKMEREKIKPNGVTFVSV 350

Query: 311 LSACSSLGFLEHGKQ-----VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           LSAC+  G +E G++        H+   GV         ++D  SK G+  +A +L   +
Sbjct: 351 LSACNHAGLIEEGRKRFASMTRDHSIPPGVEH----YGCMVDLLSKAGLLEEALQLIRTM 406

Query: 366 KV 367
           K+
Sbjct: 407 KL 408



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 178/388 (45%), Gaps = 65/388 (16%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N  IS  +    +  A   +  M   N   +N+MI  +V++    +A+ L+ ++   L  
Sbjct: 18  NQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQM---LRA 74

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +   ++   ++I AC  ++ L + + +H H+  NG D    + +SLV+ Y   G    +
Sbjct: 75  NVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEES 134

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI------ 280
            +V + M E D F  + ++SG    G M+ A R+FD   D +   WN++I GY       
Sbjct: 135 VRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVD 194

Query: 281 -------------------------SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                                     N    EAL +F++M ++G+  D  T+A+V+SAC+
Sbjct: 195 VAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACA 254

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            LG L+ GK++H +  + G   DV + SAL+D Y+K                        
Sbjct: 255 HLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAK------------------------ 290

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  CG ++ +  +F  +  K+L  WNS+I GL+ +G   EAL +F  M +  ++ +
Sbjct: 291 -------CGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPN 343

Query: 436 KFSLASVISACANISSLELGEQVFARVT 463
             +  SV+SAC +   +E G + FA +T
Sbjct: 344 GVTFVSVLSACNHAGLIEEGRKRFASMT 371



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 31/280 (11%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D + ++  IS  +   +M+ A   + +    +  ++N+MI G++ + +  +AL L+ +M 
Sbjct: 13  DCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQML 72

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           R  V   + T  S++ AC  +  L   + VHGH  + G    V V ++L+D YS  G   
Sbjct: 73  RANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIE 132

Query: 357 DACKLFSELKVYDTILLNTMITVY------SSCGRIED---------------------- 388
           ++ ++F E+   D     TM++        SS GR+ D                      
Sbjct: 133 ESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLRE 192

Query: 389 ---AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
              A+ +F  MP + +ISW +MI   SQN    EAL +F  M K  +  D+ ++A+VISA
Sbjct: 193 VDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISA 252

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           CA++ +L+LG+++   +   G + D  I ++L+D Y KCG
Sbjct: 253 CAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCG 292



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 120/237 (50%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A ++ +C    ++ +GK++H + ++ G  N  + I + L+ MY +CG+   +LL+F ++
Sbjct: 246 MATVISACAHLGALDLGKEIHYYIMQHG-FNLDVYIGSALIDMYAKCGSLDRSLLMFFKL 304

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             +N F WN++IEG    G+ E++L +F+ M ++    N  ++  ++S    AG ++  R
Sbjct: 305 REKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGR 364

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M R ++I      +  M+    + G   EA++L + +      +L+ +A I   +
Sbjct: 365 KRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTM------KLEPNAVIWGAL 418

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +  C     LE   Q+ ++ L+     +S   + LVN+  +   +  A ++   MKE
Sbjct: 419 LSGCKLHRNLEIA-QVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKE 474


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 232/503 (46%), Gaps = 105/503 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF- 82
           GK LH H LK+G  +  L   N LL  Y++  +  DA  LFDEMP+ N  S+  + +G+ 
Sbjct: 54  GKHLHCHILKRGT-SLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 83  ------------------------------------MKLGHKEKSLQ--LFNVMPQKNDF 104
                                               M L H   +L   ++ +    + F
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
               LI  ++  G +  AR +F+D+  ++ ++W  M+ CY  N F  E+++LF ++    
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR--- 229

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +   + + F ++  + +C  L A   GK +H   L    D D  +G +L+ LY K     
Sbjct: 230 IMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKS---- 285

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                      G++ DA+R+F+    T  + W+ MI+ Y  ++ 
Sbjct: 286 ---------------------------GEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDR 318

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL LF +MR+  V+ +  T ASVL AC+S   L+ GKQ+H    K G+  +V V++A
Sbjct: 319 SKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNA 378

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           ++D Y+K                               CG IE++  +F  +P+++ ++W
Sbjct: 379 IMDVYAK-------------------------------CGEIENSMKLFEELPDRNDVTW 407

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++IVG  Q G    A++LF +M + D++  + + +SV+ A A++++LE G Q+ +    
Sbjct: 408 NTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIK 467

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
              + D +++ SL+D Y KCG I
Sbjct: 468 TMYNKDTVVANSLIDMYAKCGRI 490



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 198/460 (43%), Gaps = 104/460 (22%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+  Y   GN   A  +FD++  ++  SW  M+  + +    E+SLQLFN M    
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 103 DFSWNMLISG---------------------------------------FAKAGELKTAR 123
               N  ISG                                       +AK+GE+  A+
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF +MP+ + I W+ MI  Y ++  ++EA+ LF  +    V     + F  A+V+ ACA
Sbjct: 293 RLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVP---NNFTFASVLQACA 349

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
              +L+ GKQIHS +L  GL+ +  + ++++++Y K                        
Sbjct: 350 SSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAK------------------------ 385

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                  CG++ ++ ++F+   D + V WN++I GY+   +   A+ LF  M  + +   
Sbjct: 386 -------CGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPT 438

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T +SVL A +SL  LE G Q+H    K     D +VA++L+D Y+K G  +DA   F 
Sbjct: 439 EVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFD 498

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           ++   D +  N MI                                G S +G  +EAL+L
Sbjct: 499 KMNKRDEVSWNAMIC-------------------------------GYSMHGMSMEALNL 527

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           F  M   D + +K +   V+SAC+N   L  G+  F  ++
Sbjct: 528 FDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMS 567



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 177/391 (45%), Gaps = 77/391 (19%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV----RLFKE 159
           F+ N+L++ + ++  L+ A  LF++MP+ N I++ ++   Y R+    +A+    R+FKE
Sbjct: 71  FAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKE 130

Query: 160 LNSDLVERLQCDAFILATVIG--ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
            +       + + F+  T++      DLA L                             
Sbjct: 131 GH-------EVNPFVFTTLLKLLVSMDLAHL----------------------------- 154

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
             C   ++   V  +    D F  +ALI  Y+  G ++ AR VFD       V W  M++
Sbjct: 155 --CWTLHAC--VYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVA 210

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
            Y  N    E+L LF++MR  G   +  T++  L +C  L     GK VHG A K     
Sbjct: 211 CYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDH 270

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D+ V  ALL+ Y+K G                                I DA+ +F  MP
Sbjct: 271 DLFVGIALLELYAKSG-------------------------------EIIDAQRLFEEMP 299

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
              LI W+ MI   +Q+    EALDLF  M +  +  + F+ ASV+ ACA+  SL+LG+Q
Sbjct: 300 KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ 359

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + + V   GL+S+  +S +++D Y KCG I+
Sbjct: 360 IHSCVLKFGLNSNVFVSNAIMDVYAKCGEIE 390



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 18/242 (7%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T + Y + +L++  +  ++  G Q+H     K + N    +AN L+ MY +CG   DA L
Sbjct: 438 TEVTY-SSVLRASASLAALEPGLQIH-SLTIKTMYNKDTVVANSLIDMYAKCGRINDARL 495

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGE 118
            FD+M +R+  SWNAMI G+   G   ++L LF++M     + N  ++  ++S  + AG 
Sbjct: 496 TFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGL 555

Query: 119 LKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           L   +  F  M +   I      +  M+    R G   EA++L  E+        Q    
Sbjct: 556 LYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEI------AYQPSVM 609

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           +   ++GAC     ++ G+    H+L      D      L N+Y   G +++   V   M
Sbjct: 610 VWRALLGACVIHKKVDLGRVCAQHVL-EMEPHDDATHVLLSNMYATAGRWDNVAFVRKYM 668

Query: 234 KE 235
           ++
Sbjct: 669 QK 670


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 238/482 (49%), Gaps = 50/482 (10%)

Query: 19  HSIHVGKQLHLHFLKKGILNS----TLPIANRLLQMYMRCGNPTDALLLFDEM------P 68
            S  +G +  L F K+   NS    T  + N L++ Y   G   +A+LLF  M      P
Sbjct: 73  RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
            +  F +   +    K   K   +Q+  ++ +    K+ F  N L+  +A+ GEL +AR 
Sbjct: 133 DKYTFPFG--LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARK 190

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F++M  RN ++W SMI  Y R  FA++AV LF  +  D  E +  ++  +  VI ACA 
Sbjct: 191 VFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRD--EEVTPNSVTMVCVISACAK 248

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L  LE G+++++ I  +G+                               E +D  +SAL
Sbjct: 249 LEDLETGEKVYAFIRNSGI-------------------------------EVNDLMVSAL 277

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  Y  C  ++ A+R+FD    ++  + N+M S Y+      EAL +F+ M  +GV  D 
Sbjct: 278 VDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 337

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            ++ S +S+CS L  +  GK  HG+  + G      + +AL+D Y K      A ++F  
Sbjct: 338 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 397

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +     +  N+++  Y   G ++ A   F TMP K+++SWN++I GL Q     EA+++F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457

Query: 425 CNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           C+M   + +  D  ++ S+ SAC ++ +L+L + ++  +   G+  D  + T+LVD + +
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517

Query: 484 CG 485
           CG
Sbjct: 518 CG 519



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/519 (23%), Positives = 234/519 (45%), Gaps = 77/519 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    +   G Q+H   +K G     L + N L+  Y  CG    A  +FDEM  RN
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKD-LFVQNSLVHFYAECGELDSARKVFDEMSERN 199

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLF-------NVMP------------------------- 99
             SW +MI G+ +    + ++ LF        V P                         
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + ND   + L+  + K   +  A+ LF++    N    N+M   YVR G  R
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ +F   N  +   ++ D   + + I +C+ L  + +GK  H ++L NG +    + +
Sbjct: 320 EALGVF---NLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y KC   ++A ++ + M        +++++GY   G+++ A   F+   + + V 
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436

Query: 272 WNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           WN++ISG +  +   EA+ +F  M+ + GV  D  T+ S+ SAC  LG L+  K ++ + 
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  DV + + L+D +S+                               CG  E A 
Sbjct: 497 EKNGIQLDVRLGTTLVDMFSR-------------------------------CGDPESAM 525

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF ++ N+ + +W + I  ++  G+   A++LF +M +  L+ D  +    ++AC++  
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585

Query: 451 SLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++ G+++F + + + G+  + +    +VD   + G ++
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLE 624



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 15/142 (10%)

Query: 359 CKLFSELKVY-----------DTILLNTMITVYSSCGRIED---AKHIFRTMPN-KSLIS 403
           CK   ELK++           D   +  ++      G  E    AK +F    +  +   
Sbjct: 42  CKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFM 101

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           +NS+I G + +G   EA+ LF  M    +  DK++    +SACA   +   G Q+   + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
            +G   D  +  SLV FY +CG
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECG 183


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 232/532 (43%), Gaps = 142/532 (26%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q + F  N+L+  + K G +  A TLF+ MP RN ++W+S++  Y + G+  +A+  F E
Sbjct: 72  QYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLE 131

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
                V++L  + +ILA++I AC      E G Q+HS+++ +G   D  +G+SLV LY K
Sbjct: 132 FQRTCVDKL--NEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAK 189

Query: 220 CGDFNSAN-------------------------------QVLNMMKE----PDDFCLSA- 243
            G+ + A                                Q+ N+M E    PD + LS+ 
Sbjct: 190 HGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSI 249

Query: 244 ----------------------------------LISGYANCGKMNDARRVFDRTTDTSS 269
                                             LI  Y  CG++   + +FDR    + 
Sbjct: 250 LNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNI 309

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W +MI+GY+ N+ D EA+ L  +M R G   D    +SVL++C S+  L+HG+Q+H +
Sbjct: 310 ISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSY 369

Query: 330 ACKVGVIDDVIVASALLDT-------------------------------YSKRGMPSDA 358
             KV +  D  V +AL+D                                YS++G    A
Sbjct: 370 VIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGA 429

Query: 359 CKLFSELKV---------------------------------------YDTILLNTMITV 379
            ++F E+++                                        D    + +I V
Sbjct: 430 LEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDV 489

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           YS C  I DA+++F    NK ++ WNS+  G +      EA  L+ ++     R ++F+ 
Sbjct: 490 YSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTF 549

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           A++ +A + ++SL  G+Q   +V  +GL+SD  I+ +LVD Y KCG ++  E
Sbjct: 550 AALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAE 601



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 135/526 (25%), Positives = 239/526 (45%), Gaps = 108/526 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL +  ++ SI   +++H   +  G L   + ++N LL  Y + G+  DA  LFD+M
Sbjct: 43  LANLLLAPVSNKSILYYRKVHCQVVLWG-LQYDVFLSNLLLHSYFKIGSVFDAGTLFDKM 101

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDFSWNMLI------------ 110
           P RN  SW++++  + +LG+ EK+L  F       + + N++    +I            
Sbjct: 102 PNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPG 161

Query: 111 ---------SGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                    SGF              AK GE+  AR +F+ +  +  + W ++I  Y ++
Sbjct: 162 SQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKS 221

Query: 148 GFAREAVRLFK-ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           G +  +++LF   + S+++     D ++L++++ AC+ L  L+ GKQIH+++L +    D
Sbjct: 222 GRSEVSLQLFNLMMESNVIP----DKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMD 277

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
               + L++ Y KC                               G++   + +FDR   
Sbjct: 278 VSTYNVLIDFYTKC-------------------------------GRVKAGKALFDRLDV 306

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + + W +MI+GY+ N+ D EA+ L  +M R G   D    +SVL++C S+  L+HG+Q+
Sbjct: 307 KNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQI 366

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H +  KV +  D  V +AL+D YSK     DA ++F  +  +  +  N MI  YS  G +
Sbjct: 367 HSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYL 426

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             A  +F+ M  K +              SP                    +  S++   
Sbjct: 427 CGALEVFQEMRLKHV--------------SP-----------------SFLTFVSLLGLS 455

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           A +  L+L +Q+   +   G   D+  S++L+D Y KC  I+   Y
Sbjct: 456 AALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARY 501



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 144/567 (25%), Positives = 236/567 (41%), Gaps = 111/567 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C        G Q+H + +K G     + +   L+ +Y + G    A L+FD +
Sbjct: 145 LASIIRACVQRDGGEPGSQVHSYVIKSG-FGEDVYVGTSLVVLYAKHGEIDKARLVFDGL 203

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----------------------- 104
             +   +W A+I G+ K G  E SLQLFN+M + N                         
Sbjct: 204 VLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGK 263

Query: 105 ----------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                           ++N+LI  + K G +K  + LF+ +  +N I+W +MI  Y++N 
Sbjct: 264 QIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNS 323

Query: 149 FAREAVRLFKEL-----------------NSDLVERLQCDAFILATVIGACADLAALEYG 191
           +  EAV L  E+                 +   V+ LQ    I + VI  C +       
Sbjct: 324 YDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTN 383

Query: 192 KQIHSHILVNGLD-----FDSVLGSSLVNL------YGKCGDFNSANQVLNMMK----EP 236
             I  +   N LD     FD V   S+V        Y + G    A +V   M+     P
Sbjct: 384 ALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSP 443

Query: 237 -----------------------------------DDFCLSALISGYANCGKMNDARRVF 261
                                              D F  SALI  Y+ C  + DAR VF
Sbjct: 444 SFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVF 503

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           + TT+   V+WNS+ SGY    +  EA  L+  ++ +    +  T A++ +A S L  L 
Sbjct: 504 EGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLP 563

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
           HG+Q H    K+G+  D  + +AL+D Y+K G   +A K+FS     DT   N+MI++Y+
Sbjct: 564 HGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYA 623

Query: 382 SCGRIEDAKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
             G++E+A  +F TM     N + +++ S++   S  G   + L  + +M +  +     
Sbjct: 624 QHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYGIEPGIE 683

Query: 438 SLASVISACANISSLELGEQVFARVTI 464
             ASV++       L    +   ++TI
Sbjct: 684 HYASVVTLLGRAGRLTEAREFIEKMTI 710



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 187/423 (44%), Gaps = 75/423 (17%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + +L SC +  ++  G+Q+H + +K  + +    + N L+ MY +C    DA  +FD + 
Sbjct: 348 SSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNF-VTNALIDMYSKCNALDDAKRVFDVVT 406

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--------------------------- 101
             +   +NAMIEG+ + G+   +L++F  M  K                           
Sbjct: 407 CHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQ 466

Query: 102 ------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                       + F+ + LI  ++K   ++ AR +F     ++ + WNS+   Y     
Sbjct: 467 IHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLK 526

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           + EA +L+ +L    + R + + F  A +  A + LA+L +G+Q H              
Sbjct: 527 SEEAFKLYSDLQ---LSRERPNEFTFAALTTAASILASLPHGQQFH-------------- 569

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                            NQV+ M  E D F  +AL+  YA CG + +A ++F  +    +
Sbjct: 570 -----------------NQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDT 612

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WNSMIS Y  + +  EAL +F  M  N +  +  T  SVLSACS +GF+E G Q +  
Sbjct: 613 ACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNS 672

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL-NTMITVYSSCGRIED 388
             + G+   +   ++++    + G  ++A +   ++ +    L+  ++++     G +E 
Sbjct: 673 MARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVEL 732

Query: 389 AKH 391
           AKH
Sbjct: 733 AKH 735


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 144/522 (27%), Positives = 241/522 (46%), Gaps = 107/522 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +++SC    ++ +G+ +H      G+ N    + + L++MY   G   +A   FD +
Sbjct: 144 LPYVVKSCAALGAMSLGRLVHRTARAIGLANDVY-VGSALVKMYADAGLLGNARDAFDGI 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSW------------------ 106
           P R+C  WN M++G +K G  + +++LF  M     + +F+                   
Sbjct: 203 PERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGA 262

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ +AK   L  A  LF  MP+ + + WN MI   V+NG
Sbjct: 263 QLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNG 322

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA  LF ++        + D+  L +++ A  DL  L+ GK++H +I+ N ++ D  
Sbjct: 323 LFVEAFGLFYDMQR---SGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVF 379

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L S+LV++Y KC D   A                           + DA R  D      
Sbjct: 380 LVSALVDIYFKCRDVRMAQN-------------------------LYDAARAID------ 408

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+ ++MISGY+ N    EAL +F  +    +  +A T+ASVL  C+S+  L  G+Q+HG
Sbjct: 409 VVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHG 468

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +  +        V SAL+D Y+K                               CGR++ 
Sbjct: 469 YVLRNAYERKCYVESALMDMYAK-------------------------------CGRLDL 497

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           + +IF  M  K  ++WNSMI   SQNG P EALDLF  M    ++ +  ++++ +SACA+
Sbjct: 498 SHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACAS 557

Query: 449 ISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCGFIKM 489
           + ++  G+++   VTI G + +D    ++L+D Y KCG +++
Sbjct: 558 LPAIYYGKEIHG-VTIKGPIKADIFAESALIDMYAKCGNLEL 598



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/524 (27%), Positives = 241/524 (45%), Gaps = 108/524 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L  C T   +  G QLH   +K G L   + +AN LL MY +C    DA  LF+ M
Sbjct: 245 LACFLSVCATDADLLSGAQLHSLAVKCG-LEPEVAVANTLLAMYAKCQCLDDAWRLFELM 303

Query: 68  PRRNCFSWNAMIEG----------------FMKLGHKEKSLQLFNVMPQKND-------- 103
           P+ +  +WN MI G                  + G +  S+ L +++P   D        
Sbjct: 304 PQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGK 363

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          F  + L+  + K  +++ A+ L++     + +  ++MI  YV NG
Sbjct: 364 EVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNG 423

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + EA+++F+ L   L + ++ +A  +A+V+  CA +AAL  G+QIH ++L N  +    
Sbjct: 424 MSEEALQMFRYL---LEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYE---- 476

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                     KC                  +  SAL+  YA CG+++ +  +F + +   
Sbjct: 477 ---------RKC------------------YVESALMDMYAKCGRLDLSHYIFLKMSQKD 509

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSMIS +  N +  EAL LF +M   G+  +  T+++ LSAC+SL  + +GK++HG
Sbjct: 510 EVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHG 569

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K  +  D+   SAL+D Y+K                               CG +E 
Sbjct: 570 VTIKGPIKADIFAESALIDMYAK-------------------------------CGNLEL 598

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F  MP+K+ +SWNS+I     +G   E++ L   M +   + D  +  ++ISACA+
Sbjct: 599 ALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAH 658

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGFIKMDE 491
              +E G Q+F  +T   L + ++   + +VD Y + G  K+D+
Sbjct: 659 AGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSG--KLDK 700



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 228/537 (42%), Gaps = 111/537 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLL 63
           D L  +L+ C +   + +G Q+H   +  G L  ++ L +  RLL MY+      DA+ +
Sbjct: 33  DRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAV 92

Query: 64  FDEMPRRNCFS---WNAMIEGFMKLGHKEKSLQLFNVM--------PQKNDFSW------ 106
           F  +PR    S   WN +I GF   G    ++  +  M        P  +   +      
Sbjct: 93  FSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCA 152

Query: 107 ---------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                                      + L+  +A AG L  AR  F+ +P R+ + WN 
Sbjct: 153 ALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNV 212

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           M+   ++ G    AVRLF+ + +   E    +   LA  +  CA  A L  G Q+HS   
Sbjct: 213 MMDGCIKAGDVDGAVRLFRNMRASGCEP---NFATLACFLSVCATDADLLSGAQLHS--- 266

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
                           L  KCG             EP+    + L++ YA C  ++DA R
Sbjct: 267 ----------------LAVKCG------------LEPEVAVANTLLAMYAKCQCLDDAWR 298

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F+       V WN MISG + N    EA  LF+ M+R+G   D+ TL S+L A + L  
Sbjct: 299 LFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNG 358

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ GK+VHG+  +  V  DV + SAL+D Y K                            
Sbjct: 359 LKQGKEVHGYIVRNCVNMDVFLVSALVDIYFK---------------------------- 390

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              C  +  A++++       ++  ++MI G   NG   EAL +F  + +  ++ +  ++
Sbjct: 391 ---CRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTI 447

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ASV+  CA++++L LG+Q+   V     +    + ++L+D Y KCG + +  Y  ++
Sbjct: 448 ASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLK 504



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 75/193 (38%), Gaps = 35/193 (18%)

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           +  A  L +VL  C S   L  G Q+H  A   G + D                      
Sbjct: 29  VSSADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSD---------------------- 66

Query: 361 LFSELKVYDTILLNT-MITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGS 416
                  ++ + L+T ++ +Y    R  DA  +F  +P     S + WN +I G +  G 
Sbjct: 67  -------HNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQ 119

Query: 417 PIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
              A+  +  M  +      D  +L  V+ +CA + ++ LG  V      IGL +D  + 
Sbjct: 120 HHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVG 179

Query: 475 TSLVDFYCKCGFI 487
           ++LV  Y   G +
Sbjct: 180 SALVKMYADAGLL 192


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/482 (28%), Positives = 238/482 (49%), Gaps = 50/482 (10%)

Query: 19  HSIHVGKQLHLHFLKKGILNS----TLPIANRLLQMYMRCGNPTDALLLFDEM------P 68
            S  +G +  L F K+   NS    T  + N L++ Y   G   +A+LLF  M      P
Sbjct: 73  RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
            +  F +   +    K   K   +Q+  ++ +    K+ F  N L+  +A+ GEL +AR 
Sbjct: 133 DKYTFPFG--LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARK 190

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F++M  RN ++W SMI  Y R  FA++AV LF  +  D  E +  ++  +  VI ACA 
Sbjct: 191 VFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRD--EEVTPNSVTMVCVISACAK 248

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L  LE G+++++ I  +G+                               E +D  +SAL
Sbjct: 249 LEDLETGEKVYAFIRNSGI-------------------------------EVNDLMVSAL 277

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  Y  C  ++ A+R+FD    ++  + N+M S Y+      EAL +F+ M  +GV  D 
Sbjct: 278 VDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 337

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            ++ S +S+CS L  +  GK  HG+  + G      + +AL+D Y K      A ++F  
Sbjct: 338 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 397

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +     +  N+++  Y   G ++ A   F TMP K+++SWN++I GL Q     EA+++F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457

Query: 425 CNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           C+M   + +  D  ++ S+ SAC ++ +L+L + ++  +   G+  D  + T+LVD + +
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517

Query: 484 CG 485
           CG
Sbjct: 518 CG 519



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 122/519 (23%), Positives = 234/519 (45%), Gaps = 77/519 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    +   G Q+H   +K G     L + N L+  Y  CG    A  +FDEM  RN
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKD-LFVQNSLVHFYAECGELDSARKVFDEMSERN 199

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLF-------NVMP------------------------- 99
             SW +MI G+ +    + ++ LF        V P                         
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + ND   + L+  + K   +  A+ LF++    N    N+M   YVR G  R
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ +F   N  +   ++ D   + + I +C+ L  + +GK  H ++L NG +    + +
Sbjct: 320 EALGVF---NLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y KC   ++A ++ + M        +++++GY   G+++ A   F+   + + V 
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436

Query: 272 WNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           WN++ISG +  +   EA+ +F  M+ + GV  D  T+ S+ SAC  LG L+  K ++ + 
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  DV + + L+D +S+                               CG  E A 
Sbjct: 497 EKNGIQLDVRLGTTLVDMFSR-------------------------------CGDPESAM 525

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF ++ N+ + +W + I  ++  G+   A++LF +M +  L+ D  +    ++AC++  
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585

Query: 451 SLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++ G+++F + + + G+  + +    +VD   + G ++
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLE 624



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 15/142 (10%)

Query: 359 CKLFSELKVY-----------DTILLNTMITVYSSCGRIED---AKHIFRTMPN-KSLIS 403
           CK   ELK++           D   +  ++      G  E    AK +F    +  +   
Sbjct: 42  CKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFM 101

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           +NS+I G + +G   EA+ LF  M    +  DK++    +SACA   +   G Q+   + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
            +G   D  +  SLV FY +CG
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECG 183


>gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa]
 gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 241/516 (46%), Gaps = 76/516 (14%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L Q C++  +I   +++    L       T  + NR +  Y +C    DA  LFDEMP
Sbjct: 61  AHLFQVCSSSLAIVEARKVESQLLGACPTPPTF-LLNRAIDTYGKCRCLEDAKELFDEMP 119

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
           +R+  SWNAMI   ++    EK+L  F  M +                            
Sbjct: 120 QRDGGSWNAMIRACLQCVRPEKALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQ 179

Query: 101 ------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K  F  N+++       + K G +  +R +F+++   N + WN ++  Y+  G 
Sbjct: 180 IHGLIVKYGFCGNVIVGSSLVDVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRYLEVGD 239

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EAV +F ++      +L+  ++  +  + AC+D+ A++ G QIH        + + V+
Sbjct: 240 ENEAVVMFFKM---FRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATKINFEEEEVV 296

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            SSL+++Y KCG+  SA +V ++    D    ++++S YA  G+M +AR +FD   + + 
Sbjct: 297 LSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREARELFDEMPERNM 356

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V +N++++GYI + +  EAL   + M R     D  T   +L+ CS L  ++ GKQVHG 
Sbjct: 357 VSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSDVDMGKQVHGF 416

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIED 388
             + G + + ++ +ALLD Y K G    A   F ++K   D++  N ++T Y+     E 
Sbjct: 417 IYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTSYARRQMSEQ 476

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  IFR M       W +                          +  KF  A++++ACAN
Sbjct: 477 AMSIFREM------QWET--------------------------KPHKFIFATLLAACAN 504

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             +L+ G+Q+   +   G D D +I+ +L+D Y KC
Sbjct: 505 TFALDQGKQIHGFMIRNGYDIDTVIAGALLDMYSKC 540



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 205/396 (51%), Gaps = 34/396 (8%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           QL    P    F  N  I  + K   L+ A+ LF++MP+R+  +WN+MI   ++     +
Sbjct: 82  QLLGACPTPPTFLLNRAIDTYGKCRCLEDAKELFDEMPQRDGGSWNAMIRACLQCVRPEK 141

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+  F +++   V     +    ++ + AC D+  L   +QIH  I+  G   + ++GSS
Sbjct: 142 ALSYFGDMHKQGV---YANEVTFSSALRACGDVLELCLSRQIHGLIVKYGFCGNVIVGSS 198

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++YGK                               CG M+++RR+FD   + ++V W
Sbjct: 199 LVDVYGK-------------------------------CGAMSESRRIFDEIENPNNVTW 227

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N ++  Y+   ++ EA+++F KM R  +   + T ++ L ACS +  ++ G Q+HG A K
Sbjct: 228 NIIVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATK 287

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +   ++ +V S+L+D Y K G    A ++F      D I   +M++ Y+  GR+ +A+ +
Sbjct: 288 INFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREAREL 347

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP ++++S+N+++ G  ++    EALD    M +    +D  +   +++ C+ +S +
Sbjct: 348 FDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSDV 407

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++G+QV   +   G  S+ +I  +L+D YCKCG ++
Sbjct: 408 DMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLR 443



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 179/384 (46%), Gaps = 65/384 (16%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           +++I+ ++K G  E + ++F++   ++  SW  ++S +A +G ++ AR LF++MP RN +
Sbjct: 298 SSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREARELFDEMPERNMV 357

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           ++N+++  Y+R+    EA+  F  L     E +  D      ++  C+ L+ ++ GKQ+H
Sbjct: 358 SYNALLAGYIRSLQWEEALD-FVYLMCRTTENI--DHITFQLMLNVCSGLSDVDMGKQVH 414

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             I  +G   ++V+G++L+++Y KCG+  SA    + MK+  D                 
Sbjct: 415 GFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRD----------------- 457

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                        SV WN +++ Y       +A+ +F +M+           A++L+AC+
Sbjct: 458 -------------SVSWNVLLTSYARRQMSEQAMSIFREMQWE-TKPHKFIFATLLAACA 503

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +   L+ GKQ+HG   + G   D ++A ALLD YSK                        
Sbjct: 504 NTFALDQGKQIHGFMIRNGYDIDTVIAGALLDMYSK------------------------ 539

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  C  +E A  +FR    + L+ WNSMI+G    G    AL LF  M +   + D
Sbjct: 540 -------CRCLEYALIVFREADKRDLVLWNSMILGCCHLGRGKLALRLFGFMEEEGTKPD 592

Query: 436 KFSLASVISACANISSLELGEQVF 459
             +   ++ AC     ++L  Q F
Sbjct: 593 NVTFQGILLACVYEGHVDLARQYF 616



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 31/262 (11%)

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
           +Q+L     P  F L+  I  Y  C  + DA+ +FD         WN+MI   +      
Sbjct: 81  SQLLGACPTPPTFLLNRAIDTYGKCRCLEDAKELFDEMPQRDGGSWNAMIRACLQCVRPE 140

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +AL  F  M + GV  +  T +S L AC  +  L   +Q+HG   K G   +VIV S+L+
Sbjct: 141 KALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQIHGLIVKYGFCGNVIVGSSLV 200

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y K G  S++ ++F E++                               N + ++WN 
Sbjct: 201 DVYGKCGAMSESRRIFDEIE-------------------------------NPNNVTWNI 229

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           ++    + G   EA+ +F  M +  LR   ++ ++ + AC+++ +++ G Q+    T I 
Sbjct: 230 IVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATKIN 289

Query: 467 LDSDQIISTSLVDFYCKCGFIK 488
            + ++++ +SL+D Y KCG I+
Sbjct: 290 FEEEEVVLSSLIDMYVKCGEIE 311



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 16/194 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL +C    ++  GKQ+H   ++ G    T+ IA  LL MY +C     AL++F E 
Sbjct: 495 FATLLAACANTFALDQGKQIHGFMIRNGYDIDTV-IAGALLDMYSKCRCLEYALIVFREA 553

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----GELKTAR 123
            +R+   WN+MI G   LG  + +L+LF  M ++     N+   G   A    G +  AR
Sbjct: 554 DKRDLVLWNSMILGCCHLGRGKLALRLFGFMEEEGTKPDNVTFQGILLACVYEGHVDLAR 613

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M  +  I      +  +I    R G  +E     K++  D        A +L  V
Sbjct: 614 QYFNSMSSKYCIIPRLEHYECIIELLSRYGCMKELENFIKDMPFDPT------APMLTRV 667

Query: 179 IGACADLAALEYGK 192
           + AC +      G+
Sbjct: 668 VDACKEHQCWRLGE 681



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 45/250 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR- 69
           +L  C+    + +GKQ+H    + G L++T+ I N LL MY +CGN   A + F +M + 
Sbjct: 397 MLNVCSGLSDVDMGKQVHGFIYRHGWLSNTV-IGNALLDMYCKCGNLRSAGVWFHQMKQS 455

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQK----------------------- 101
           R+  SWN ++  + +    E+++ +F  M     P K                       
Sbjct: 456 RDSVSWNVLLTSYARRQMSEQAMSIFREMQWETKPHKFIFATLLAACANTFALDQGKQIH 515

Query: 102 -----NDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                N +  + +I+G     ++K   L+ A  +F +  +R+ + WNSMI      G  +
Sbjct: 516 GFMIRNGYDIDTVIAGALLDMYSKCRCLEYALIVFREADKRDLVLWNSMILGCCHLGRGK 575

Query: 152 EAVRLFK--ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD-FDSV 208
            A+RLF   E      + +     +LA V     DLA   +      + ++  L+ ++ +
Sbjct: 576 LALRLFGFMEEEGTKPDNVTFQGILLACVYEGHVDLARQYFNSMSSKYCIIPRLEHYECI 635

Query: 209 LGSSLVNLYG 218
           +   L++ YG
Sbjct: 636 I--ELLSRYG 643


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 243/521 (46%), Gaps = 78/521 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L  C+    +  GK++H   ++ G++     +++  +  Y +C    +A  +FD M
Sbjct: 144 VSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVF-VSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ--------------------- 100
           P R+  +WN++   ++  G  +K L +F       V P                      
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGK 262

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       +N F  N L++ +     ++ A+ +F+ MP RN I WNS+  CYV  G
Sbjct: 263 AIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCG 322

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F ++ + +F+E+  + V+    D   +++++ AC+ L  L+ GK IH   + +G+  D  
Sbjct: 323 FPQKGLNVFREMGLNGVKP---DPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVF 379

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LVNLY                               ANC  + +A+ VFD     +
Sbjct: 380 VCTALVNLY-------------------------------ANCLCVREAQTVFDLMPHRN 408

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNS+ S Y++     + L +F +M  NGV  D  T+ S+L ACS L  L+ GK +HG
Sbjct: 409 VVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHG 468

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A + G+++DV V +ALL  Y+K     +A  +F  +   +    N ++T Y +    E 
Sbjct: 469 FAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEK 528

Query: 389 AKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
             ++F  M    +    I+W+ +I G  +N    EA+++F  M  +  + D+ ++ S++ 
Sbjct: 529 GLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILR 588

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AC+    L +G+++   V     D D   + +LVD Y KCG
Sbjct: 589 ACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCG 629



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 248/532 (46%), Gaps = 84/532 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    +  GK +H   LK G++ +   ++N L+ +Y  C    +A  +FD MP R
Sbjct: 248 ILSACSDLQDLKSGKAIHGFALKHGMVENVF-VSNALVNLYESCLCVREAQAVFDLMPHR 306

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP---QKNDFSWNMLIS 111
           N  +WN++   ++  G  +K L +F                +++P   Q  D      I 
Sbjct: 307 NVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIH 366

Query: 112 GFA-KAGEL-------------------KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           GFA K G +                   + A+T+F+ MP RN + WNS+  CYV  GF +
Sbjct: 367 GFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQ 426

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           + + +F+E+   ++  ++ D   + +++ AC+DL  L+ GK IH   + +G+  D  + +
Sbjct: 427 KGLNVFREM---VLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCN 483

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR----TTDT 267
           +L++LY KC     A  V +++   +    + +++ Y    +      +F +        
Sbjct: 484 ALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKA 543

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             + W+ +I G + N+   EA+ +F KM+  G   D +T+ S+L ACS    L  GK++H
Sbjct: 544 DEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIH 603

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
                                          C +F   K +D    N ++ +Y+ CG + 
Sbjct: 604 -------------------------------CYVFRHWKDWDLARTNALVDMYAKCGGLS 632

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            ++++F  MP K + SWN+MI     +G+  EAL LF  M    ++ D  +   V+SAC+
Sbjct: 633 LSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACS 692

Query: 448 NISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           +   +E G Q+F   +R  ++  +++    T +VD Y + G ++ + Y  +Q
Sbjct: 693 HSMLVEEGVQIFNSMSRDHLVEPEAEHY--TCVVDIYSRAGCLE-EAYGFIQ 741



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/499 (23%), Positives = 230/499 (46%), Gaps = 105/499 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ H    + G++ S + I N  +  Y +C     A  +FD++  R+  +WN++   ++ 
Sbjct: 60  KQFHDDATRCGVM-SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVN 118

Query: 85  LGHKEKSLQLF----------------NVMPQKND-----------------------FS 105
            G  ++ L +F                +++P  +D                       F 
Sbjct: 119 CGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFV 178

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            +  ++ +AK   ++ A+T+F+ MP R+ + WNS+  CYV  GF ++ + +F+E+   ++
Sbjct: 179 SSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREM---VL 235

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           + ++ D   ++ ++ AC+DL  L+ GK IH   L +G+  +  + ++LVNLY  C     
Sbjct: 236 DGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESC----- 290

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                         C+              +A+ VFD     + + WNS+ S Y++    
Sbjct: 291 -------------LCV-------------REAQAVFDLMPHRNVITWNSLASCYVNCGFP 324

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            + L +F +M  NGV  D   ++S+L ACS L  L+ GK +HG A K G+++DV V +AL
Sbjct: 325 QKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTAL 384

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
                                          + +Y++C  + +A+ +F  MP++++++WN
Sbjct: 385 -------------------------------VNLYANCLCVREAQTVFDLMPHRNVVTWN 413

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           S+       G P + L++F  M    ++ D  ++ S++ AC+++  L+ G+ +       
Sbjct: 414 SLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRH 473

Query: 466 GLDSDQIISTSLVDFYCKC 484
           G+  D  +  +L+  Y KC
Sbjct: 474 GMVEDVFVCNALLSLYAKC 492



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 31/205 (15%)

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
           I +    EA+ ++   R  G+  D     +V  AC++       KQ H  A + GV+ DV
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDV 75

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            + +A +  Y K      A ++F +L   D +  N++   Y +CG  +   ++FR M   
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM--- 132

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
                     GL++                  ++ +  +++S++  C+++  L+ G+++ 
Sbjct: 133 ----------GLNK------------------VKANPLTVSSILPGCSDLQDLKSGKEIH 164

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKC 484
             V   G+  D  +S++ V+FY KC
Sbjct: 165 GFVVRHGMVEDVFVSSAFVNFYAKC 189


>gi|224103443|ref|XP_002313059.1| predicted protein [Populus trichocarpa]
 gi|222849467|gb|EEE87014.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 233/480 (48%), Gaps = 43/480 (8%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           S+ VG   H+  +K G    TLPI  +N+L+ +Y +     +A  LFDEMPRRN +SWN 
Sbjct: 3   SLRVGLIHHVRSIKSGF---TLPILTSNQLIHLYSKHCLINEAQKLFDEMPRRNIYSWNT 59

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAW 137
                                          +IS   K+  L  A+++F+    R+ + +
Sbjct: 60  -------------------------------IISAHVKSQNLAQAKSIFDSASVRDLVTY 88

Query: 138 NSMIHCYVR-NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           NSM+  Y   +G+ R A+ LF E++S     +  D F + +++   A L+ L YG Q+HS
Sbjct: 89  NSMLSGYADVDGYERNALELFVEMHSK-SNDIGVDDFTVTSMVKLFAKLSNLCYGMQLHS 147

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL---SALISGYANCGK 253
           +++  G D    + SSL+++Y KCG +  A  +    ++     L   +A+++     G+
Sbjct: 148 YMVKTGNDRSGFVVSSLIDMYSKCGCYKEACGIFRGSEKEGGIDLVSKNAMVAACCREGE 207

Query: 254 MNDARRVFDRTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           M  A  +F R  +   SV WN++ISGY+ N    EAL LF  M  NGV  +  T  SVLS
Sbjct: 208 MEMALGLFWRENELNDSVSWNTLISGYVQNGYPLEALKLFVCMGENGVKWNEHTFGSVLS 267

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+ L  L+ GK++H    K G+     V S ++D Y K G    A           +  
Sbjct: 268 ACADLRNLKIGKEMHAWILKNGLSSSAFVESGIVDVYCKGGNMKYAESFHLTSGTGSSFS 327

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC-NMNKLD 431
           + +MI  YSS G + +A  +F ++  K+ I W ++  G  +        +L C  + K  
Sbjct: 328 ITSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFGGYVKLNQCEAIFELLCLYIAKEA 387

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              D   L S +S CA  ++L  G+Q+   V  +G++ D  ++T+++D Y KCG I   E
Sbjct: 388 AIPDALILVSALSVCAFQAALGPGKQIHGYVYRMGIEMDIKMTTAMIDMYSKCGSIPYAE 447



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 217/443 (48%), Gaps = 67/443 (15%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G QLH + +K G   S   +++ L+ MY +CG   +A                    G  
Sbjct: 142 GMQLHSYMVKTGNDRSGFVVSS-LIDMYSKCGCYKEAC-------------------GIF 181

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF-NDMPRRNAIAWNSMIH 142
           +   KE  + L          S N +++   + GE++ A  LF  +    ++++WN++I 
Sbjct: 182 RGSEKEGGIDLV---------SKNAMVAACCREGEMEMALGLFWRENELNDSVSWNTLIS 232

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            YV+NG+  EA++LF  +  + V   + +     +V+ ACADL  L+ GK++H+ IL NG
Sbjct: 233 GYVQNGYPLEALKLFVCMGENGV---KWNEHTFGSVLSACADLRNLKIGKEMHAWILKNG 289

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L   + + S +V++Y K G+   A            F ++++I GY++ G M +A R+FD
Sbjct: 290 LSSSAFVESGIVDVYCKGGNMKYAESFHLTSGTGSSFSITSMIVGYSSQGNMVEACRLFD 349

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEAL--LLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
              + +S++W ++  GY+  N+  EA+  LL   + +   + DA  L S LS C+    L
Sbjct: 350 SLEEKNSIVWAALFGGYVKLNQ-CEAIFELLCLYIAKEAAIPDALILVSALSVCAFQAAL 408

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             GKQ+HG+  ++G+  D+ + +A++D                               +Y
Sbjct: 409 GPGKQIHGYVYRMGIEMDIKMTTAMID-------------------------------MY 437

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           S CG I  A+ +F  +  + L+ +N M+ G + +G  I+A++LF  M +  +  D  +  
Sbjct: 438 SKCGSIPYAEKMFLKVIERDLVLYNVMVAGYAHHGYEIKAINLFQEMLERGVGPDAITFV 497

Query: 441 SVISACANISSLELGEQVFARVT 463
           +++SAC +   ++LGE+ F  +T
Sbjct: 498 ALLSACRHRGLVDLGERTFYSMT 520



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           + +L  G   H   + +G     +  + L++LY K    N A ++ + M   + +  + +
Sbjct: 1   MRSLRVGLIHHVRSIKSGFTLPILTSNQLIHLYSKHCLINEAQKLFDEMPRRNIYSWNTI 60

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS-NNEDTEALLLFHKM--RRNGVL 301
           IS +     +  A+ +FD  +    V +NSM+SGY   +  +  AL LF +M  + N + 
Sbjct: 61  ISAHVKSQNLAQAKSIFDSASVRDLVTYNSMLSGYADVDGYERNALELFVEMHSKSNDIG 120

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ S++   + L  L +G Q+H +  K G      V S+L+D YSK G   +AC +
Sbjct: 121 VDDFTVTSMVKLFAKLSNLCYGMQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCYKEACGI 180

Query: 362 F--SELKV-YDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSP 417
           F  SE +   D +  N M+      G +E A  +F R       +SWN++I G  QNG P
Sbjct: 181 FRGSEKEGGIDLVSKNAMVAACCREGEMEMALGLFWRENELNDSVSWNTLISGYVQNGYP 240

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
           +EAL LF  M +  ++ ++ +  SV+SACA++ +L++G+++ A +   GL S   + + +
Sbjct: 241 LEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLSSSAFVESGI 300

Query: 478 VDFYCKCGFIKMDEYY 493
           VD YCK G +K  E +
Sbjct: 301 VDVYCKGGNMKYAESF 316


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 239/527 (45%), Gaps = 105/527 (19%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+   + +L++C +   ++ GK +H   +K GI N    + N L+ +Y +CG+   A  +
Sbjct: 127 RLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGI-NPDSHLWNSLVNVYAKCGSANYACKV 185

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW------------- 106
           F E+P R+  SW A+I GF+  G+   ++ LF  M ++    N+F++             
Sbjct: 186 FGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDL 245

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 + L+  +AK GE+  A  +F  MP++NA++WN++++ +
Sbjct: 246 EFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGF 305

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            + G A + + LF  +       +    F L+TV+  CA+   L  G+ +HS  +  G +
Sbjct: 306 AQMGDAEKVLNLFCRMTGS---EINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCE 362

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D  +   LV++Y KCG    A +V   +++PD    SA+I+     G+  +A  VF R 
Sbjct: 363 LDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKR- 421

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                         MR +GV+ +  TLAS++SA + LG L +G+
Sbjct: 422 ------------------------------MRHSGVIPNQFTLASLVSAATDLGDLYYGE 451

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H   CK G   D  V +AL+  Y K G   D C+                        
Sbjct: 452 SIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCR------------------------ 487

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                  +F    N+ LISWN+++ G   N +    L +F  M       + ++  S++ 
Sbjct: 488 -------VFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILR 540

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +C+++S ++LG+QV A++    LD +  + T+LVD Y K  F++  E
Sbjct: 541 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 587



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/522 (25%), Positives = 237/522 (45%), Gaps = 105/522 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  L++C+    +  GKQ+H   +K G   S L + + L+ +Y +CG    A  +F  MP
Sbjct: 233 ATALKACSMCLDLEFGKQVHAEAIKVGDF-SDLFVGSALVDLYAKCGEMVLAERVFLCMP 291

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR- 123
           ++N  SWNA++ GF ++G  EK L LF  M       + F+ + ++ G A +G L+  + 
Sbjct: 292 KQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQI 351

Query: 124 ----------------------------------TLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                              +F  +   + ++W+++I C  + G 
Sbjct: 352 VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQ 411

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           +REA  +FK +    V   Q   F LA+++ A  DL  L YG+ IH+ +   G ++D+ +
Sbjct: 412 SREAAEVFKRMRHSGVIPNQ---FTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTV 468

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            ++LV +Y K G                                + D  RVF+ TT+   
Sbjct: 469 CNALVTMYMKIG-------------------------------SVQDGCRVFEATTNRDL 497

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + WN+++SG+  N      L +F++M   G   +  T  S+L +CSSL  ++ GKQVH  
Sbjct: 498 ISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ 557

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  +  +  V +AL+D Y+K                                  +EDA
Sbjct: 558 IVKNSLDGNDFVGTALVDMYAKNRF-------------------------------LEDA 586

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + IF  +  + L +W  ++ G +Q+G   +A+  F  M +  ++ ++F+LAS +S C+ I
Sbjct: 587 ETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRI 646

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++L+ G Q+ +     G   D  ++++LVD Y KCG ++  E
Sbjct: 647 ATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 160/335 (47%), Gaps = 66/335 (19%)

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E  R+++ L+ D   RL+  + +L T    CA    L  GK IH  ++ +G++ DS L +
Sbjct: 112 EKKRIWRGLDFDSKGRLRQYSGMLRT----CASKGDLNEGKAIHGQVIKSGINPDSHLWN 167

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SLVN+                               YA CG  N A +VF    +   V 
Sbjct: 168 SLVNV-------------------------------YAKCGSANYACKVFGEIPERDVVS 196

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W ++I+G+++    + A+ LF +MRR GV  +  T A+ L ACS    LE GKQVH  A 
Sbjct: 197 WTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAI 256

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           KVG   D+ V SAL+D Y+K                               CG +  A+ 
Sbjct: 257 KVGDFSDLFVGSALVDLYAK-------------------------------CGEMVLAER 285

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  MP ++ +SWN+++ G +Q G   + L+LFC M   ++   KF+L++V+  CAN  +
Sbjct: 286 VFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGN 345

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           L  G+ V +    IG + D+ IS  LVD Y KCG 
Sbjct: 346 LRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGL 380



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/497 (23%), Positives = 214/497 (43%), Gaps = 105/497 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C    ++  G+ +H   ++ G       I+  L+ MY +CG   DAL +F  +
Sbjct: 333 LSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF-ISCCLVDMYSKCGLAGDALKVFVRI 391

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQ--------------------- 100
              +  SW+A+I    + G   ++ ++F       V+P                      
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGE 451

Query: 101 -------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K  F +     N L++ + K G ++    +F     R+ I+WN+++  +  N 
Sbjct: 452 SIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNE 511

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
                +R+F ++   L E    + +   +++ +C+ L+ ++ GKQ+H+ I+ N LD +  
Sbjct: 512 TCDTGLRIFNQM---LAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF 568

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV++                               YA    + DA  +F+R     
Sbjct: 569 VGTALVDM-------------------------------YAKNRFLEDAETIFNRLIKRD 597

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              W  +++GY  + +  +A+  F +M+R GV  +  TLAS LS CS +  L+ G+Q+H 
Sbjct: 598 LFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS 657

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   D+ VASAL+D Y+K G   DA  +F  L   DT+  NT+I  YS  G+   
Sbjct: 658 MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK 717

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  M ++  +                                D+ +   V+SAC++
Sbjct: 718 ALKAFEAMLDEGTVP-------------------------------DEVTFIGVLSACSH 746

Query: 449 ISSLELGEQVFARVTII 465
           +  +E G++ F  ++ I
Sbjct: 747 MGLIEEGKKHFNSLSKI 763



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 178/423 (42%), Gaps = 80/423 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +      ++ G+ +H    K G       + N L+ MYM+ G+  D   +F+  
Sbjct: 434 LASLVSAATDLGDLYYGESIHACVCKYGFEYDN-TVCNALVTMYMKIGSVQDGCRVFEAT 492

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
             R+  SWNA++ GF      +  L++FN M  +                          
Sbjct: 493 TNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK 552

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        NDF    L+  +AK   L+ A T+FN + +R+  AW  ++  Y ++G
Sbjct: 553 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 612

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +AV+ F ++     E ++ + F LA+ +  C+ +A L+ G+Q+HS  +  G      
Sbjct: 613 QGEKAVKCFIQMQR---EGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAG------ 663

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                    +  D F  SAL+  YA CG + DA  VFD      
Sbjct: 664 -------------------------QSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRD 698

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN++I GY  + +  +AL  F  M   G + D  T   VLSACS +G +E GK+   
Sbjct: 699 TVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFN 758

Query: 329 HACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC---G 384
              K+ G+   +   + ++D   + G   +      E+K+   +L+    TV  +C   G
Sbjct: 759 SLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLI--WETVLGACKMHG 816

Query: 385 RIE 387
            IE
Sbjct: 817 NIE 819



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 27/246 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L  C+   ++  G+QLH   +K G  +  + +A+ L+ MY +CG   DA ++FD +
Sbjct: 636 LASSLSGCSRIATLDSGRQLHSMAIKAG-QSGDMFVASALVDMYAKCGCVEDAEVVFDGL 694

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             R+  SWN +I G+ + G   K+L+ F  M  +    ++ ++  ++S  +  G ++  +
Sbjct: 695 VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 754

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN + +   I      +  M+    R G   E     +E+      +L  +  I  TV
Sbjct: 755 KHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEM------KLTSNVLIWETV 808

Query: 179 IGACADLAALEYGKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM--- 233
           +GAC     +E+G++    +  L   +D + +L   L N++   G ++    V  +M   
Sbjct: 809 LGACKMHGNIEFGERAAMKLFELEPEIDSNYIL---LSNMFAAKGMWDDVTNVRALMSTR 865

Query: 234 ---KEP 236
              KEP
Sbjct: 866 GVKKEP 871


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/520 (28%), Positives = 225/520 (43%), Gaps = 105/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L+ +C+   S+  GK++H H LK    +  L + N +L MY +C +  DA  +FD MP
Sbjct: 67  AYLISACSYLRSLEHGKKIHDHMLKSKS-HPDLTLQNHILNMYGKCKSLKDAQKVFDAMP 125

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF------------------ 104
            RN  SW ++I G+ + G    +L+ +       VMP +  F                  
Sbjct: 126 ERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQ 185

Query: 105 ---------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                          + N LIS + K+  +  A  +F+ M  R+ I+W SMI  + + G+
Sbjct: 186 LHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGY 245

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA+  FKE+    V     + FI  +V  AC+ L   EYG+Q+H   +  GL  D   
Sbjct: 246 ELEALCYFKEMLHQGV--YLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFA 303

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G SL ++Y K                               CG ++ AR VF +      
Sbjct: 304 GCSLCDMYAK-------------------------------CGLLSCARVVFYQIGRPDL 332

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN++I+G+    +  EA+  F +MR  G++ D  T+ S+L AC+S   L  G QVHG+
Sbjct: 333 VAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGY 392

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K+G+  DV V + LL  Y+K                               C  + DA
Sbjct: 393 INKMGLDLDVPVCNTLLTMYAK-------------------------------CSELRDA 421

Query: 390 KHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
              F  M  N  L+SWN+++    ++    E   L   M     R D  +L +V+ A A 
Sbjct: 422 IFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAE 481

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             S+E+G QV       GL+ D  ++  L+D Y KCG +K
Sbjct: 482 TVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLK 521



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/530 (24%), Positives = 231/530 (43%), Gaps = 106/530 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              ++++C++   I +G+QLH H LK     + +   N L+ MY +     DAL +F  M
Sbjct: 167 FGSIIKACSSLGDIGLGRQLHAHVLKSE-FGAHIIAQNALISMYTKSNLIIDALDVFSRM 225

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             R+  SW +MI GF +LG++ ++L  F  M  +  +  N  I G               
Sbjct: 226 ATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYG 285

Query: 113 -------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                    +AK G L  AR +F  + R + +AWN++I  +   
Sbjct: 286 RQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYG 345

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G A+EA+  F ++     + L  D   + +++ AC   + L  G Q+H +I   GLD D 
Sbjct: 346 GDAKEAIAFFSQMRH---QGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDV 402

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++L+ +Y KC +   A      M+     C + L+S                     
Sbjct: 403 PVCNTLLTMYAKCSELRDAIFFFEEMR-----CNADLVS--------------------- 436

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
               WN++++  + +++  E   L   M  +    D  TL +VL A +    +E G QVH
Sbjct: 437 ----WNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVH 492

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +A K G+                       C         DT + N +I +Y+ CG ++
Sbjct: 493 CYALKTGL----------------------NC---------DTSVTNGLIDLYAKCGSLK 521

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A  IF +M N  ++SW+S+I+G +Q G   EAL LF  M +LD++ +  +   V++AC+
Sbjct: 522 TAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACS 581

Query: 448 NISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++  +E G +++  +    G+   +   + +VD   + G +   E ++ Q
Sbjct: 582 HVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQ 631



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 154/351 (43%), Gaps = 65/351 (18%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N  I    +     EA++ F+ L       L    +  A +I AC+ L +LE+GK+IH H
Sbjct: 31  NEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTY--AYLISACSYLRSLEHGKKIHDH 88

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +L +    D  L + ++N+YGKC                                 + DA
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKCKS-------------------------------LKDA 117

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           ++VFD   + + V W S+I+GY  N +   AL  + +M ++GV+ D  T  S++ ACSSL
Sbjct: 118 QKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSL 177

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G +  G+Q+H H  K      +I  +AL+  Y+K  +                       
Sbjct: 178 GDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNL----------------------- 214

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DK 436
                   I DA  +F  M  + LISW SMI G SQ G  +EAL  F  M    + + ++
Sbjct: 215 --------IIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNE 266

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           F   SV SAC+++   E G Q+       GL  D     SL D Y KCG +
Sbjct: 267 FIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLL 317



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 191/440 (43%), Gaps = 83/440 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              +  +C++      G+QLH   +K G L   +     L  MY +CG  + A ++F ++
Sbjct: 269 FGSVFSACSSLLQPEYGRQLHGMSIKFG-LGRDVFAGCSLCDMYAKCGLLSCARVVFYQI 327

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS---------------------- 105
            R +  +WNA+I GF   G  ++++  F+ M  +                          
Sbjct: 328 GRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGM 387

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNA--IAWNSMIHCYVR 146
                             N L++ +AK  EL+ A   F +M R NA  ++WN+++   +R
Sbjct: 388 QVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEM-RCNADLVSWNAILTACMR 446

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +  A E  RL K +    + + + D   L  V+GA A+  ++E G Q+H + L  GL+ D
Sbjct: 447 HDQAEEVFRLLKLM---CISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCD 503

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           + + + L++LY KCG   +A+++ + M  PD    S+LI GYA  G              
Sbjct: 504 TSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGY------------- 550

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
                               EAL LF  MRR  V  +  T   VL+ACS +G +E G ++
Sbjct: 551 ------------------GEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKL 592

Query: 327 HGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCG 384
           +G   K  G+       S ++D  ++ G  ++A     ++    D ++  T++    + G
Sbjct: 593 YGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHG 652

Query: 385 RIE----DAKHIFRTMPNKS 400
            ++     A++I +  P+ S
Sbjct: 653 NVDVGKRAAENILKIDPSNS 672



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 19/243 (7%)

Query: 4   RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           R DY  L  +L +     SI +G Q+H + LK G LN    + N L+ +Y +CG+   A 
Sbjct: 466 RPDYITLTNVLGASAETVSIEIGNQVHCYALKTG-LNCDTSVTNGLIDLYAKCGSLKTAH 524

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAG 117
            +FD M   +  SW+++I G+ + G+ E++L+LF  M     + N  ++  +++  +  G
Sbjct: 525 KIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVG 584

Query: 118 ELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            ++    L+  M +   IA      + M+    R G   EA     ++  D       D 
Sbjct: 585 LVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDP------DI 638

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
            +  T++ AC     ++ GK+   +IL      +S     L N+Y   G++    ++ ++
Sbjct: 639 VVWKTLLAACKTHGNVDVGKRAAENILKIDPS-NSAAHVLLCNIYASKGNWEDVARLRSL 697

Query: 233 MKE 235
           MK+
Sbjct: 698 MKQ 700


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 154/544 (28%), Positives = 254/544 (46%), Gaps = 103/544 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             LLQ C    ++H G+Q+H   +KKG I      I  +L+  Y +C NP  +  LF  +
Sbjct: 14  GELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRV 73

Query: 68  PRRNCFSWNAMI-----EGFMK---LGHKE--------KSLQLFNVMPQKNDFSW---NM 108
             +N FSW A+I     +GF +   LG KE         +  L NV+       W     
Sbjct: 74  RLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIGK 133

Query: 109 LISGFAKAGEL------KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           ++ G    G +         +     MP+RNA+AWNSMI  YV+NG   EA+ +F E+  
Sbjct: 134 VVHGLVSCGYVWKMWGGGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMRE 193

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           + VE  Q     L++ + A A+L AL+ GKQ H+  ++ G++  + LGSSL+N Y K G 
Sbjct: 194 EGVEPTQVT---LSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGL 250

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A  V + M E D    + LISGY   G+++                           
Sbjct: 251 IEDAESVFSRMLEKDVVTWNLLISGYVQIGEVD--------------------------- 283

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC----------- 331
               +AL + H MR   +  D+ TLA+++SA + +  L+ GK+ H +             
Sbjct: 284 ----KALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVV 339

Query: 332 -----------KVG---------VIDDVIVASALLDTYSKRGMPSDACKLFSELKVY--- 368
                      K+G         +  D+I+ + +L  +++ G   +A  LF ++++    
Sbjct: 340 SSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVP 399

Query: 369 -DTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEAL 421
            + I  N++I  + + G++ +AK +F  M      PN  L++W ++I GL+++G   EA+
Sbjct: 400 PNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPN--LVTWTTLISGLARSGFGYEAI 457

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             F  M +  ++ +  S+  V+ AC N++SL++G  +   +    L     I+TSLVD Y
Sbjct: 458 LTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMY 517

Query: 482 CKCG 485
            KCG
Sbjct: 518 AKCG 521



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/511 (23%), Positives = 234/511 (45%), Gaps = 125/511 (24%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------------ 102
           MP+RN  +WN+MI G+++ G  E+++++F  M ++                         
Sbjct: 160 MPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDG 219

Query: 103 ------------DFSWNM---LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                       + + N+   LI+ ++K G ++ A ++F+ M  ++ + WN +I  YV+ 
Sbjct: 220 KQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQI 279

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   +A+ +   +    +E L+ D+  LAT++ A AD+  L+ GK+ H + + N L+ D 
Sbjct: 280 GEVDKALNMCHLMR---LENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDV 336

Query: 208 VLGSSLVNLYGKCGDFNSANQVLN--------------------------------MMKE 235
           V+ SS+V++Y KC     A +V N                                M  E
Sbjct: 337 VVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLE 396

Query: 236 ---PDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSMISGYISNNEDTEA 288
              P+    ++LI G+ N G++N+A+ +F +        + V W ++ISG   +    EA
Sbjct: 397 SVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEA 456

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           +L F +M+  GV  +  ++  VL AC +L  L+ G+ +HG+  +  +   + +A++L+D 
Sbjct: 457 ILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDM 516

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K                               CG  + AK +F  +P+K L  +N+MI
Sbjct: 517 YAK-------------------------------CGDRDQAKRVFDMIPDKELPIYNAMI 545

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G + +G  +EAL L+  + +  L+ D  +  + + AC++   +  G ++F     + + 
Sbjct: 546 SGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYACSHAMMVSEGLELF-----VDMV 600

Query: 469 SDQIISTSLVDFYC------KCGFIKMDEYY 493
           S+  I+ S+  + C      +CG   +DE +
Sbjct: 601 SNHNINPSIEHYGCMVSLLSRCG--DLDEAF 629



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 169/379 (44%), Gaps = 91/379 (24%)

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF--DSVLGSSLVNLYGKCGD 222
           ++ L+    +   ++  C    AL  G+QIH+ I+  G  F  +  + + LV  Y KC +
Sbjct: 3   LKNLRIGPEVYGELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDN 62

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
             ++N +   ++  + F  +A+I    NC      R+ F +                   
Sbjct: 63  PEASNSLFRRVRLKNVFSWAAVIG--LNC------RKGFYQ------------------- 95

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH-----GHACKVGVID 337
               EALL F +M+ NG+L D   L +VL AC  L ++  GK VH     G+  K+    
Sbjct: 96  ----EALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIGKVVHGLVSCGYVWKMWGGG 151

Query: 338 ------------DVIVASALLDTYSKRGMPSDACKLFSELK------------------- 366
                       + +  ++++  Y + G+  +A ++F E++                   
Sbjct: 152 GCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASA 211

Query: 367 --------------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                  T L +++I  YS  G IEDA+ +F  M  K +++WN 
Sbjct: 212 NLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNL 271

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +I G  Q G   +AL++ C++ +L+ LR D  +LA+++SA A++ +L+LG++        
Sbjct: 272 LISGYVQIGEVDKALNM-CHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRN 330

Query: 466 GLDSDQIISTSLVDFYCKC 484
            L+SD ++ +S+VD Y KC
Sbjct: 331 NLESDVVVVSSIVDMYAKC 349



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 17/234 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S+ +G+ LH + ++   L  ++PIA  L+ MY +CG+   A  +FD +P +
Sbjct: 478 VLLACINLASLQIGRALHGYLIRHS-LYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDK 536

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
               +NAMI GF   G   ++L L+  + ++    ++ ++   +   + A  +     LF
Sbjct: 537 ELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYACSHAMMVSEGLELF 596

Query: 127 NDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
            DM   + I      +  M+    R G   EA  L   +        + D  IL +++ A
Sbjct: 597 VDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAM------PYKPDVQILGSLLAA 650

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C +   +E  + + + +L    D +S    ++ N Y   G ++   +V  +MKE
Sbjct: 651 CREHNKIELEEYLSNQLLKLQPD-NSGNYVAMSNAYAAAGRWDEVKKVRQLMKE 703


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 237/520 (45%), Gaps = 87/520 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC     + +G QLH H LK       + +    L MY +C N  DA +LFD+  
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDKSE 301

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
             N  S+NAMI G+ +  H  K+L LF+ +                              
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 101 ------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K+  S      N  I  + K   L  A  +F++M RR+A++WN++I  + +NG 
Sbjct: 362 IYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 421

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E + LF  +   L  R++ D F   +V+ AC    +L YG +IHS I+ +G+  +S +
Sbjct: 422 GYETLFLFVSM---LRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSV 477

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G SL+++Y KCG    A ++ +   +  +             G M +  ++ ++      
Sbjct: 478 GCSLIDMYSKCGMIEEAEKIHSRFFQRTNVS-----------GTMEELEKMHNKRLQEMC 526

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNS+ISGY+   +  +A +LF +M   G+  D  T A+VL  C++L     GKQ+H  
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  +  DV ++S L+D YSK                               CG + D+
Sbjct: 587 VIKKELQSDVYISSTLVDMYSK-------------------------------CGDLHDS 615

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F     +  ++WN+MI G + +G   EA+ LF  M   +++ +  +  S++ ACA++
Sbjct: 616 RLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHM 675

Query: 450 SSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
             ++ G + F  +    GLD      +++VD   K G +K
Sbjct: 676 GLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 715



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 232/517 (44%), Gaps = 86/517 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+ C+      +G Q+H   ++ G  ++ +  A+ LL MY +     ++L +F  +
Sbjct: 141 FAIILKVCSCLEDTSLGMQIHGVVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N  SW+A+I G ++      +L+ F  M +                           
Sbjct: 200 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 259

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K+DF+ + ++       +AK   ++ A+ LF+     N  ++N+MI  Y +  
Sbjct: 260 QLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEE 319

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ LF  L S     L  D   L+ V  ACA +  L  G QI+   + + L  D  
Sbjct: 320 HGFKALLLFHRLMSS---GLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVC 376

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++ +++YGK                               C  + +A RVFD      
Sbjct: 377 VANAAIDMYGK-------------------------------CQALAEAFRVFDEMRRRD 405

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN++I+ +  N +  E L LF  M R+ +  D  T  SVL AC+  G L +G ++H 
Sbjct: 406 AVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHS 464

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  +  V  +L+D YSK GM  +A K+ S           T ++     G +E+
Sbjct: 465 SIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF------FQRTNVS-----GTMEE 513

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            + +      +  +SWNS+I G        +A  LF  M ++ +  DKF+ A+V+  CAN
Sbjct: 514 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 573

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++S  LG+Q+ A+V    L SD  IS++LVD Y KCG
Sbjct: 574 LASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCG 610



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 197/470 (41%), Gaps = 97/470 (20%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C    ++ +GKQ H H +  G   +T  + N LLQ+Y    +   A ++FD MP R+  S
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTF-VLNCLLQVYTNSRDFVSASMVFDRMPLRDVVS 74

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134
           WN MI G+ K  +  K+   FN+MP ++  SWN ++SG+ + GE   +  +F DM R   
Sbjct: 75  WNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGT 134

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
                                             + D    A ++  C+ L     G QI
Sbjct: 135 ----------------------------------EFDGRTFAIILKVCSCLEDTSLGMQI 160

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H  ++  G D D V  S+L+++Y K   F  + +V                         
Sbjct: 161 HGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV------------------------- 195

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
                 F    + +SV W+++I+G + NN  + AL  F +M++       S  ASVL +C
Sbjct: 196 ------FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSC 249

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           ++L  L  G Q+H HA K     D IV +A LD Y+K                       
Sbjct: 250 AALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK----------------------- 286

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
                   C  ++DA+ +F    N +  S+N+MI G SQ     +AL LF  +    L  
Sbjct: 287 --------CDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGF 338

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           D+ SL+ V  ACA +  L  G Q++       L  D  ++ + +D Y KC
Sbjct: 339 DEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKC 388


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 224/482 (46%), Gaps = 97/482 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
            +I   + + Q C+  +S++ GKQ H   +  G   +T  ++N L+QMY++C     A  
Sbjct: 47  AKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTF-VSNCLMQMYIKCLYLDYACK 105

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
           +FD+M  R+  S+N+                               +ISG+A  GE+  A
Sbjct: 106 VFDKMYLRDVVSYNS-------------------------------IISGYASCGEMDIA 134

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R  F +MP R+ ++WNS+I  +++NG  R+++ +F E+    V     D   LA V+ AC
Sbjct: 135 RKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGV---GFDRASLAVVLKAC 191

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
             L   + G Q+H  ++  G D D V GS+L+ +Y KC                      
Sbjct: 192 GALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKC---------------------- 229

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                     +++D+  VF    + + V W++MI+G + N+ + E L LF +M+  GV  
Sbjct: 230 ---------KRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGV 280

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
             S  AS+  +C++L  L  GK++H HA K     D+IV +A LD Y+K           
Sbjct: 281 SQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAK----------- 329

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                               CGR+ DA+ +  +MP  SL S+N++IVG +++    +AL 
Sbjct: 330 --------------------CGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALK 369

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
            F  + K  L  D+ +L+  ++ACA+I     G QV          S+  ++ +++D Y 
Sbjct: 370 SFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYG 429

Query: 483 KC 484
           KC
Sbjct: 430 KC 431



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 232/519 (44%), Gaps = 106/519 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L +SC    ++ +GK+LH H LK     S + +    L MY +CG   DA  +   MP
Sbjct: 286 ASLFRSCAALSALRLGKELHSHALKSA-FGSDIIVGTATLDMYAKCGRMADAQKVLSSMP 344

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------KNDFSW-- 106
           + +  S+NA+I G+ +     ++L+ F ++ +                    + D     
Sbjct: 345 KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ 404

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N ++  + K   L  A  LF+ M RR+A++WN++I    +NG 
Sbjct: 405 VHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGN 464

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E +  F  +   +  R++ D F   +V+ ACA   AL  G +IH+ I+ +G+ FDS +
Sbjct: 465 EEETLAHFASM---IHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFV 521

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++LV++Y K                               CG +  A ++ DRT   + 
Sbjct: 522 GAALVDMYCK-------------------------------CGMIEKADKIHDRTEQKTM 550

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN++ISG+    +  +A   F +M   GV  D  T A+VL  C++L  +  GKQ+H  
Sbjct: 551 VSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQ 610

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  +  DV + S L+D YSK                               CG ++D+
Sbjct: 611 IIKQELQSDVYICSTLVDMYSK-------------------------------CGNMQDS 639

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F   PN+  ++WN+M+ G + +G   EAL LF +M  ++++ +  +  SV+ ACA++
Sbjct: 640 QLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHM 699

Query: 450 SSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             ++ G   F   ++  GLD      + +VD   + G I
Sbjct: 700 GLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRI 738



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 178/347 (51%), Gaps = 41/347 (11%)

Query: 149 FAREAVRLFKELN-------SDLVE-RLQCDAFI--LATVIGACADLAALEYGKQIHSHI 198
           F+  A+ LFK++        S L + + Q  A I   + +   C+   +L  GKQ H+ +
Sbjct: 16  FSYHAIPLFKKIPPIPTNNFSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARM 75

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
           +  G +  + + + L+ +Y KC   + A +V + M   D    +++ISGYA+CG+M+ AR
Sbjct: 76  IFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIAR 135

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           + F    +   V WNS+ISG++ N E  +++ +F +M R GV  D ++LA VL AC +L 
Sbjct: 136 KFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALE 195

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
             + G QVHG   K G   DV+  SALL  Y+K                           
Sbjct: 196 ECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAK--------------------------- 228

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
               C R++D+  +F  +P K+ +SW++MI G  QN   +E L+LF  M  + + + +  
Sbjct: 229 ----CKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSI 284

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            AS+  +CA +S+L LG+++ +        SD I+ T+ +D Y KCG
Sbjct: 285 YASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCG 331



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 222/517 (42%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C       +G Q+H   +K G  +  +   + LL MY +C    D+L +F E+
Sbjct: 184 LAVVLKACGALEECDMGVQVHGLVVKFG-FDCDVVTGSALLGMYAKCKRLDDSLSVFSEL 242

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N  SW+AMI G ++     + L+LF  M                             
Sbjct: 243 PEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGK 302

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K+ F  ++++       +AK G +  A+ + + MP+ +  ++N++I  Y R+ 
Sbjct: 303 ELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSD 362

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A++ F+ L   L   L  D   L+  + ACA +     G+Q+H      GL   S+
Sbjct: 363 RGFQALKSFQLL---LKTGLGFDEITLSGALNACASIRGDLEGRQVH------GLAVKSI 413

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             S++            AN +L+M               Y  C  + +A  +FD      
Sbjct: 414 SMSNIC----------VANAILDM---------------YGKCKALAEASDLFDMMERRD 448

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN++I+    N  + E L  F  M  + +  D  T  SVL AC+    L  G ++H 
Sbjct: 449 AVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHT 508

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  D  V +AL+D Y K                               CG IE 
Sbjct: 509 RIIKSGMGFDSFVGAALVDMYCK-------------------------------CGMIEK 537

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  I      K+++SWN++I G S      +A   F  M ++ +  D F+ A+V+  CAN
Sbjct: 538 ADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCAN 597

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++++ LG+Q+ A++    L SD  I ++LVD Y KCG
Sbjct: 598 LATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCG 634



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 186/441 (42%), Gaps = 105/441 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C +      G+Q+H     K I  S + +AN +L MY +C    +A  LFD M
Sbjct: 386 LSGALNACASIRGDLEGRQVH-GLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMM 444

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWN---------------- 107
            RR+  SWNA+I    + G++E++L  F  M     + +DF++                 
Sbjct: 445 ERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGM 504

Query: 108 -------------------MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               L+  + K G ++ A  + +   ++  ++WN++I  +    
Sbjct: 505 EIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQ 564

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +A + F  +   L   +  D F  A V+  CA+LA +  GKQIH+ I+   L  D  
Sbjct: 565 QSEDAHKFFSRM---LEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVY 621

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S+LV++                               Y+ CG M D++ +F++  +  
Sbjct: 622 ICSTLVDM-------------------------------YSKCGNMQDSQLMFEKAPNRD 650

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN+M+ GY  +    EAL LF  M+   V  + +T  SVL AC+ +G ++ G     
Sbjct: 651 FVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYF- 709

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                    DV+++   LD  S+                      + M+ +    GRI++
Sbjct: 710 ---------DVMLSEYGLDPQSEH--------------------YSCMVDILGRSGRIDE 740

Query: 389 AKHIFRTMPNKS-LISWNSMI 408
           A ++ + MP ++  + W +++
Sbjct: 741 ALNLVQKMPFEADAVIWRNLL 761


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 214/449 (47%), Gaps = 42/449 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  + + G    +  LF+ MP ++  SW  L++ +A  G+L +AR +F+DMPRRNA 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+++  Y+R    R A  LF ++ +        +A     +I   A    L   + ++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAK-------NAVSYGAIISGLAKAEMLHEAELVY 154

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             +     D   V  ++L+  Y + G+   A +V   M   D    SA++ G    G ++
Sbjct: 155 EEMPWQWRD--PVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVS 212

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARRVFD   + + V W SMI GY+      + LLLF  MRR GV  + +TL+  L AC+
Sbjct: 213 EARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACA 272

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +      G Q+H     +G   D+ +  +++  YS+ G   DA + F  ++  D +  N+
Sbjct: 273 AASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNS 332

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ---------------------- 413
           +IT Y     +E+A  +F+ M  K  +SW SM+VG +                       
Sbjct: 333 LITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAW 392

Query: 414 ---------NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
                    NG  + A+  FC M++   + +  + + ++SA A+++ L  G Q  A    
Sbjct: 393 TAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSIN 452

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           +G   D  + TSLV  Y KCG  ++ E Y
Sbjct: 453 MGWVFDSAVHTSLVSMYAKCG--RLAEAY 479



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 219/463 (47%), Gaps = 68/463 (14%)

Query: 59  DALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           +A L+++EMP   R+    NA++ G++++G    +L++F  M  ++  SW+ ++ G  K 
Sbjct: 149 EAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKH 208

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G +  AR +F+ MP RN ++W SMI  YV+ G  R+ + LF  +     E +Q +   L+
Sbjct: 209 GSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR---EGVQVNTTTLS 265

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
             + ACA  +    G QIH+ I+  G + D  LG S++ +Y + G    A +  + M++ 
Sbjct: 266 VALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQK 325

Query: 237 DDFCLSALISGY-------------------------------ANCGKMNDARRVFDRTT 265
           D    ++LI+GY                               AN G M ++  +F++  
Sbjct: 326 DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V W ++IS +I+N +   A+  F +M + G   +    + +LSA +SL  L  G+Q
Sbjct: 386 VKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQ 445

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H ++  +G                                V+D+ +  +++++Y+ CGR
Sbjct: 446 AHAYSINMGW-------------------------------VFDSAVHTSLVSMYAKCGR 474

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           + +A H+F ++ N SLI+ NSMI    Q+G   +AL LF  M     + +  +   +++ 
Sbjct: 475 LAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTG 534

Query: 446 CANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           CA    ++ G   F  +  + G++ +    T +VD   + G +
Sbjct: 535 CARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 36/363 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C        G Q+H   +  G     + + + ++ MY R G   DA   FD M
Sbjct: 264 LSVALDACAAASLAREGIQIHNLIISMG-FELDIFLGDSIIIMYSRFGWMVDAKRAFDCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  SWN++I G+++    E++  LF +M QK+  SW  ++ GFA  G ++ +  LF 
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ +AW ++I  ++ NG    AVR F  ++    E  + +    + ++ A A LA 
Sbjct: 383 QMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQ---EGCKPNTIAFSCLLSALASLAM 439

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q H++ +  G  FDS + +SLV++Y KCG    A  V + +  P    ++++I+ 
Sbjct: 440 LNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITA 499

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +   G + D                               AL LF KM+  G   +  T 
Sbjct: 500 FVQHGFVED-------------------------------ALKLFTKMQNAGYKPNHVTF 528

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             +L+ C+  GF++ G         V GV  +    + ++D   + G+ ++A ++ + + 
Sbjct: 529 LGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP 588

Query: 367 VYD 369
             D
Sbjct: 589 QND 591



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 126/274 (45%), Gaps = 29/274 (10%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 297
           L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F  M R   
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 298 ---NGVL---------------------EDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
              N +L                     ++A +  +++S  +    L   + V+      
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP-- 158

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
               D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP ++++SW SMI G  + G   + L LF NM +  ++++  +L+  + ACA  S   
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            G Q+   +  +G + D  +  S++  Y + G++
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWM 312


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 219/479 (45%), Gaps = 80/479 (16%)

Query: 13  QSCNTHHSIH---VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           + C++   I+   +GKQ+H   L++G +   L + N LL++Y +  +   A L+F EMP 
Sbjct: 240 EGCDSLSEIYGNVLGKQIHSLALRRGFVGE-LHLNNSLLEIYAKNKDMNGAELIFTEMPE 298

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTL 125
            N  SWN MI GF +    +KS++    M     + N+ +   ++    ++G+++T R +
Sbjct: 299 VNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRI 358

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           FN +P+ +  AWN+M+  Y       EA+  F+++     + L+ D   L+ ++ +CA L
Sbjct: 359 FNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQ---FQNLKPDRTTLSVILSSCARL 415

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             LE GKQIH                                  +      D   +S LI
Sbjct: 416 RFLEGGKQIH-------------------------------GVAIRTETSEDSHIVSGLI 444

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVL-ED 303
           + Y+ C KM     +FD   +   +  WNSMISG   N  DT+AL+LF +M +  VL  +
Sbjct: 445 AVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPN 504

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            +T A VL +CS L  L HG+Q HG   K G + D  V +A+ D Y K            
Sbjct: 505 ETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCK------------ 552

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CG IE A+  F T+  K+ + WN MI G + NG   EA+DL
Sbjct: 553 -------------------CGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDL 593

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           +  M     + D  +  SV++AC++   ++ G ++ +      +  D  I   L  + C
Sbjct: 594 YREMISAGEKPDGITFVSVLTACSHSGLVDTGLEILS-----SMQRDHGIEPELDHYIC 647



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 139/530 (26%), Positives = 220/530 (41%), Gaps = 120/530 (22%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N  L    + G+  +A  +FD MP R+  SWN MI   ++ G +EK+L ++  M      
Sbjct: 62  NAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFL 121

Query: 99  PQ---------------------------------KNDFSWNMLISGFAKAG-ELKTART 124
           P                                  KN F  N L+S +AK G  +     
Sbjct: 122 PSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVR 181

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG---- 180
           +F  +   N +++ ++I    R     EAV +F+ +    V   Q D   L+ ++     
Sbjct: 182 VFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGV---QVDCVCLSNILSISVP 238

Query: 181 --ACADLAALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
              C  L+ +     GKQIHS  L  G   +  L +SL+ +Y K  D N A  +   M E
Sbjct: 239 REGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPE 298

Query: 236 PDDFCLSALISGYAN-----------------------------------CGKMNDARRV 260
            +    + +I+G+                                      G +   RR+
Sbjct: 299 VNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRI 358

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F+     S   WN+M+SGY +     EA+  F +M+   +  D +TL+ +LS+C+ L FL
Sbjct: 359 FNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFL 418

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E GKQ+HG A +    +D  + S L                               I VY
Sbjct: 419 EGGKQIHGVAIRTETSEDSHIVSGL-------------------------------IAVY 447

Query: 381 SSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFS 438
           S C ++E  + IF    N+  I+ WNSMI GL +N    +AL LF  M++  + + ++ +
Sbjct: 448 SECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNETT 507

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            A V+ +C+ + SL  G Q   +V   G  SD  + T++ D YCKCG I+
Sbjct: 508 YAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIE 557



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 211/456 (46%), Gaps = 83/456 (18%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N +++ +++ G  + + +LF+ M  ++ +SWN  ++   K G+L+ A  +F+ MP R+ +
Sbjct: 31  NRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVV 90

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSD--LVERLQCDAFILATVIGACADLAALEYGKQ 193
           +WN+MI   VR GF  +A+ ++  +  D  L  R     F LA+V+ AC+ +     G +
Sbjct: 91  SWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSR-----FTLASVLSACSKVQDGVIGMR 145

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDF-NSANQVLNMMKEPDDFCLSALISGYANCG 252
            H   +  GLD +  +G++L+++Y KCG   +   +V   + EP++   + +ISG A   
Sbjct: 146 CHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGLAR-- 203

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                                         N+  EA+ +F  M   GV  D   L+++LS
Sbjct: 204 -----------------------------ENKVLEAVHMFRLMCEKGVQVDCVCLSNILS 234

Query: 313 ------ACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
                  C SL  +     GKQ+H  A + G + ++ + ++LL+ Y+K    + A  +F+
Sbjct: 235 ISVPREGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFT 294

Query: 364 ELKVYDTILLNTM--------------------------------ITVYSSC---GRIED 388
           E+   + +  N M                                I++  +C   G +E 
Sbjct: 295 EMPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVET 354

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            + IF T+P  S+ +WN+M+ G S      EA++ F  M   +L+ D+ +L+ ++S+CA 
Sbjct: 355 GRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCAR 414

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  LE G+Q+           D  I + L+  Y +C
Sbjct: 415 LRFLEGGKQIHGVAIRTETSEDSHIVSGLIAVYSEC 450



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 123/512 (24%), Positives = 212/512 (41%), Gaps = 94/512 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDE 66
           LA +L +C+      +G + H   +K G L+  + + N LL MY +CG   D  + +F+ 
Sbjct: 127 LASVLSACSKVQDGVIGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFMVDYGVRVFES 185

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------NDFSWNMLISG---- 112
           +   N  S+  +I G  +     +++ +F +M +K          N  S ++   G    
Sbjct: 186 LSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSL 245

Query: 113 ----------------------------------FAKAGELKTARTLFNDMPRRNAIAWN 138
                                             +AK  ++  A  +F +MP  N ++WN
Sbjct: 246 SEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWN 305

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
            MI  + +   + +++   K +     E    +     +++GAC     +E G++I + I
Sbjct: 306 IMIAGFGQEYRSDKSIEYLKRMRDSGFEP---NEVTCISILGACFRSGDVETGRRIFNTI 362

Query: 199 ----------LVNG----------------LDFD---------SVLGSSLVNLYGKCGDF 223
                     +++G                + F          SV+ SS   L    G  
Sbjct: 363 PQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGK 422

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISN 282
                 +      D   +S LI+ Y+ C KM     +FD   +   +  WNSMISG   N
Sbjct: 423 QIHGVAIRTETSEDSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRN 482

Query: 283 NEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
             DT+AL+LF +M +  V L + +T A VL +CS L  L HG+Q HG   K G + D  V
Sbjct: 483 TLDTKALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFV 542

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM----P 397
            +A+ D Y K G    A + F  +   +T++ N MI  Y+  GR ++A  ++R M     
Sbjct: 543 ETAVTDMYCKCGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGE 602

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
               I++ S++   S +G     L++  +M +
Sbjct: 603 KPDGITFVSVLTACSHSGLVDTGLEILSSMQR 634



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 135/283 (47%), Gaps = 23/283 (8%)

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL+ D+ L + L++LY + GD + A ++ + M   D +  +A ++     G + +A  VF
Sbjct: 22  GLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVF 81

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D   +   V WN+MIS  +    + +AL ++ +M  +G L    TLASVLSACS +    
Sbjct: 82  DGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQDGV 141

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKLFSELKVYDTILLNTMITVY 380
            G + HG A K G+  ++ V +ALL  Y+K G   D   ++F  L   + +   T+I+  
Sbjct: 142 IGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGL 201

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +   ++ +A H+FR M  K +                   +D  C  N L + + +    
Sbjct: 202 ARENKVLEAVHMFRLMCEKGV------------------QVDCVCLSNILSISVPREGCD 243

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           S+     N+    LG+Q+ +     G   +  ++ SL++ Y K
Sbjct: 244 SLSEIYGNV----LGKQIHSLALRRGFVGELHLNNSLLEIYAK 282



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%)

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G+  D  + + LLD Y + G    A KLF E+ + D    N  +T     G +E+A  
Sbjct: 20  RTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACE 79

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  MP + ++SWN+MI  L + G   +ALD++  M        +F+LASV+SAC+ +  
Sbjct: 80  VFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQD 139

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +G +        GLD +  +  +L+  Y KCGF+
Sbjct: 140 GVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFM 175



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L SC+   S+  G+Q H   +K G ++ +  +   +  MY +CG    A   FD + 
Sbjct: 509 AIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSF-VETAVTDMYCKCGEIESARQFFDTVS 567

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTART 124
           R+N   WN MI G+   G  ++++ L+  M     + +  ++  +++  + +G + T   
Sbjct: 568 RKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVDTGLE 627

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRL 156
           + + M R + I      +  ++ C  R G   +A  L
Sbjct: 628 ILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETL 664


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 235/463 (50%), Gaps = 47/463 (10%)

Query: 40  TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVM 98
           +L + N++L+      + T  L LF E+  +  +  N  +   +K +G   K ++   V 
Sbjct: 10  SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVH 69

Query: 99  P-------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + + +  N L+  +A  G+++    +F++MP+R+ ++WN +I  YV NG   
Sbjct: 70  GYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFE 129

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ +FK ++ +    L+ D   + + + AC+ L  LE G++I+  + V   +    +G+
Sbjct: 130 DAIGVFKRMSQE--SNLKFDEGTIVSTLSACSALKNLEIGERIYRFV-VTEFEMSVRIGN 186

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV+++ KCG  + A  V + M++ +  C ++++ GY + G++++AR +F+R+     V+
Sbjct: 187 ALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVL 246

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +M++GY+  N   EAL LF  M+  G+  D   L S+L+ C+  G LE GK +HG+  
Sbjct: 247 WTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIN 306

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  V  D +V +AL+D Y+K G    A ++F E+K  DT                     
Sbjct: 307 ENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDT--------------------- 345

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                      SW S+I GL+ NG    ALDL+  M  + +R+D  +  +V++AC +   
Sbjct: 346 ----------ASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGF 395

Query: 452 LELGEQVFARVTI---IGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +  G ++F  +T    +   S+    + L+D  C+ G +   E
Sbjct: 396 VAEGRKIFHSMTERHNVQPKSEH--CSCLIDLLCRAGLLDEAE 436



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 159/363 (43%), Gaps = 75/363 (20%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA+++ F K G  +K+  +F+ M  KN   W  ++ G+   G +  AR LF   P ++ +
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W +M++ YV+     EA+ LF+ + +     ++ D F+L +++  CA   ALE GK IH
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQT---AGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            +I  N +  D V+G++LV++Y K                               CG + 
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAK-------------------------------CGCIE 331

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  VF    +  +  W S+I G   N     AL L+++M   GV  DA T  +VL+AC+
Sbjct: 332 TALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACN 391

Query: 316 SLGFLEHGKQVHGHA---------------------CKVGVIDD---------------- 338
             GF+  G+++  H+                     C+ G++D+                
Sbjct: 392 HGGFVAEGRKIF-HSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETL 450

Query: 339 VIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
           V V  +LL     Y    +     +   +++V D+     + +VY+S  R ED  ++ R 
Sbjct: 451 VPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRK 510

Query: 396 MPN 398
           M +
Sbjct: 511 MKD 513


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 228/517 (44%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL+SC+    + +G Q+H   +K G L   +   + L+ MY +C +  DAL  F  M
Sbjct: 152 FAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYGKCRSLDDALCFFYGM 210

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P RN  SW A I G ++     + L+LF  M +                           
Sbjct: 211 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN FS + ++       +AKA  L  AR  F  +P       N+M+   VR G
Sbjct: 271 QLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 330

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF+ +   +   ++ D   L+ V  ACA+      G+Q+H   + +G D D  
Sbjct: 331 LGIEAMGLFQFM---IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 387

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +++++LYGKC     A  +   MK+ D                               
Sbjct: 388 VNNAVLDLYGKCKALMEAYLIFQGMKQKD------------------------------- 416

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV WN++I+    N    + +L F++M R G+  D  T  SVL AC++L  LE+G  VH 
Sbjct: 417 SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHD 476

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  D  VAS ++D Y K                               CG I++
Sbjct: 477 KVIKSGLGSDAFVASTVVDMYCK-------------------------------CGIIDE 505

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +   +  + ++SWN+++ G S N    EA   F  M  + L+ D F+ A+V+  CAN
Sbjct: 506 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++++ELG+Q+  ++    +  D+ IS++LVD Y KCG
Sbjct: 566 LATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG 602



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 200/424 (47%), Gaps = 66/424 (15%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N +++ + +      + ++F+ MP+++  SWN +++ ++ AG++ TA  LF+ MP  
Sbjct: 53  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 112

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           + ++WN+++  Y + G  +E+V LF E+    V     D    A ++ +C+ L  L  G 
Sbjct: 113 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSP---DRTTFAVLLKSCSALEELSLGV 169

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H+  +  GL+ D   GS+LV++YGK                               C 
Sbjct: 170 QVHALAVKTGLEIDVRTGSALVDMYGK-------------------------------CR 198

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            ++DA   F    + + V W + I+G + N +    L LF +M+R G+     + AS   
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C+++  L  G+Q+H HA K     D +V +A++D Y+K                     
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK--------------------- 297

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                        + DA+  F  +PN ++ + N+M+VGL + G  IEA+ LF  M +  +
Sbjct: 298 ----------ANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSI 347

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           R D  SL+ V SACA       G+QV       G D D  ++ +++D Y KC  + M+ Y
Sbjct: 348 RFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL-MEAY 406

Query: 493 YLMQ 496
            + Q
Sbjct: 407 LIFQ 410



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 134/486 (27%), Positives = 207/486 (42%), Gaps = 112/486 (23%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVM 98
           N +L  Y   G+ + A+ LFD MP  +  SWNA++ G+ + G  ++S+ LF       V 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 99  PQKNDF---------------------------------SWNMLISGFAKAGELKTARTL 125
           P +  F                                 + + L+  + K   L  A   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  MP RN ++W + I   V+N      + LF E+       L       A+   +CA +
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQR---LGLGVSQPSYASAFRSCAAM 263

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
           + L  G+Q+H+H + N    D V+G+++V++Y K                          
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK-------------------------- 297

Query: 246 SGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
              AN   + DARR F    + T +TS    N+M+ G +      EA+ LF  M R+ + 
Sbjct: 298 ---AN--SLTDARRAFFGLPNHTVETS----NAMMVGLVRAGLGIEAMGLFQFMIRSSIR 348

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  +L+ V SAC+       G+QVH  A K G   D+ V +A+LD Y K          
Sbjct: 349 FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGK---------- 398

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                                C  + +A  IF+ M  K  +SWN++I  L QNG   + +
Sbjct: 399 ---------------------CKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTI 437

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             F  M +  ++ D F+  SV+ ACA + SLE G  V  +V   GL SD  +++++VD Y
Sbjct: 438 LHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 497

Query: 482 CKCGFI 487
           CKCG I
Sbjct: 498 CKCGII 503



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 220/494 (44%), Gaps = 105/494 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   +SC     ++ G+QLH H +K    +S   +   ++ +Y +  + TDA   F  +P
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
                + NAM+ G ++ G   +++ LF  M +                            
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 101 ------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K+ F  ++ ++      + K   L  A  +F  M ++++++WN++I    +NG 
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             + +  F E+   L   ++ D F   +V+ ACA L +LEYG  +H  ++ +GL  D+ +
Sbjct: 433 YDDTILHFNEM---LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 489

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            S++V++Y K                               CG +++A+++ DR      
Sbjct: 490 ASTVVDMYCK-------------------------------CGIIDEAQKLHDRIGGQQV 518

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN+++SG+  N E  EA   F +M   G+  D  T A+VL  C++L  +E GKQ+HG 
Sbjct: 519 VSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 578

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  ++DD  ++S L+D Y+K                               CG + D+
Sbjct: 579 IIKQEMLDDEYISSTLVDMYAK-------------------------------CGDMPDS 607

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F  +  +  +SWN+MI G + +G  +EAL +F  M K ++  +  +  +V+ AC+++
Sbjct: 608 LLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 667

Query: 450 SSLELGEQVFARVT 463
              + G + F  +T
Sbjct: 668 GLFDDGCRYFHLMT 681



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 31/286 (10%)

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           ++V+G    + + + L+ +Y +C     A +V + M   D    + +++ Y++ G ++ A
Sbjct: 43  MVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
             +FD   D   V WN+++SGY       E++ LF +M R GV  D +T A +L +CS+L
Sbjct: 103 VALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSAL 162

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G QVH  A K G+  DV   SAL+D Y K                          
Sbjct: 163 EELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK-------------------------- 196

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                C  ++DA   F  MP ++ +SW + I G  QN   +  L+LF  M +L L + + 
Sbjct: 197 -----CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           S AS   +CA +S L  G Q+ A        SD+++ T++VD Y K
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK 297



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 82/151 (54%)

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G +    V++ LL  Y++    + A ++F  +   DT+  NTM+T YS  G I  A  +F
Sbjct: 47  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP+  ++SWN+++ G  Q G   E++DLF  M +  +  D+ + A ++ +C+ +  L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           LG QV A     GL+ D    ++LVD Y KC
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 215/451 (47%), Gaps = 75/451 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G     L  F+ M  RN  SWN M++G++ +G  + +   F  +P  N  
Sbjct: 175 NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVV 234

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  ++SGFA  G +  AR LFN+MP +N ++WN+MI  YVR     +A +LF E+    
Sbjct: 235 SWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEK- 293

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDF 223
                 D+     +I     +     GK + +  ++N + + ++   ++++N Y + G  
Sbjct: 294 ------DSVSWTAMINGYVRV-----GKLLQAREILNLMPYKNIAAQTAMINGYLQSGRM 342

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF---------------------- 261
           + AN++ + +   D  C +++I+GYA+CG+ ++A R+F                      
Sbjct: 343 DEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAG 402

Query: 262 ---------DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                    +   + + V WNS+I+GY+ N    EAL  F  M++ G   D +T+   L 
Sbjct: 403 QMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLR 462

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           A ++L  L  G Q+H    K G  +D+ V +A+L                          
Sbjct: 463 ASANLAALNVGVQLHHLTIKTGFGNDLFVKNAIL-------------------------- 496

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                T+Y+  GR+ +A+++F  + NK ++SWNS+I G + NG   EA++LF  M    +
Sbjct: 497 -----TMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGI 551

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT 463
             D+ +   ++SAC +   ++ G  +F  +T
Sbjct: 552 IPDEVTFTGLLSACNHGGFVDQGLNLFKSMT 582



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 237/478 (49%), Gaps = 49/478 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   +A  LFD MP+RN  SWN+MI G++     E + +LF+ M +++ +
Sbjct: 50  NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIY 109

Query: 105 SWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           SW ++I+ + + GEL+ AR LFN +P +++ +  N++I  Y +    REA +LF E+   
Sbjct: 110 SWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM--- 166

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS-------LVNL 216
                     ++  V+   + L+   Y K     +   GL F   +G         +V+ 
Sbjct: 167 ----------LVKNVVSWNSILSG--YTKNGKMQL---GLQFFEAMGERNVVSWNLMVDG 211

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
           Y   GD +SA      +  P+      ++SG+A+ G+M +AR +F+     + V WN+MI
Sbjct: 212 YVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMI 271

Query: 277 SGYISNNEDTEALLLFHKMR---------------RNGVLEDASTLASVL-----SACSS 316
             Y+  N+  +A  LF +M                R G L  A  + +++     +A ++
Sbjct: 272 GAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTA 331

Query: 317 L--GFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           +  G+L+ G+    +     + + D +  ++++  Y+  G   +A +LF E+   D +  
Sbjct: 332 MINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSW 391

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI  Y+  G+++ A  +F  M  ++++SWNS+I G  QNG   EAL+ F  M +   +
Sbjct: 392 NTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEK 451

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            D+ ++   + A AN+++L +G Q+       G  +D  +  +++  Y K G +   E
Sbjct: 452 PDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAE 509



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 38/305 (12%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + VGK L    +   +    +     ++  Y++ G   +A  +F ++  R+   WN+MI 
Sbjct: 306 VRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMIT 365

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G+   G  +++L+LF  M  K+  SWN +I+ +A+AG++  A  +FN+M  RN ++WNS+
Sbjct: 366 GYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL 425

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  YV+NG   EA+  F  +     +  + D   +   + A A+LAAL  G Q+H   + 
Sbjct: 426 ITGYVQNGLYFEALNCFILMKQ---QGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIK 482

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA--NCGKMNDAR 258
            G   D  + ++++ +Y K G    A  V   +K  D    ++LI+GYA   CGK     
Sbjct: 483 TGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGK----- 537

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
                                       EA+ LF  M   G++ D  T   +LSAC+  G
Sbjct: 538 ----------------------------EAVELFEVMPLRGIIPDEVTFTGLLSACNHGG 569

Query: 319 FLEHG 323
           F++ G
Sbjct: 570 FVDQG 574



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           + G   +A  +F ++   + +  N+MI+ Y+  GRI +A+ +F  MP ++L+SWNSMI G
Sbjct: 27  RSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
              N    +A  LF  M K D+    +S   +I+    I  LE   ++F    ++    D
Sbjct: 87  YLHNELVEDAARLFDRMFKRDI----YSWTLMITCYTRIGELEKARELF---NLLPDKQD 139

Query: 471 QIISTSLVDFYCK 483
            +   +L+  Y K
Sbjct: 140 TVCRNALIAGYAK 152


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 228/517 (44%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL+SC+    + +G Q+H   +K G L   +   + L+ MY +C +  DAL  F  M
Sbjct: 152 FAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYGKCRSLDDALCFFYGM 210

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P RN  SW A I G ++     + L+LF  M +                           
Sbjct: 211 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 270

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN FS + ++       +AKA  L  AR  F  +P       N+M+   VR G
Sbjct: 271 QLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 330

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF+ +   +   ++ D   L+ V  ACA+      G+Q+H   + +G D D  
Sbjct: 331 LGIEAMGLFQFM---IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 387

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +++++LYGKC     A  +   MK+ D                               
Sbjct: 388 VNNAVLDLYGKCKALMEAYLIFQGMKQKD------------------------------- 416

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV WN++I+    N    + +L F++M R G+  D  T  SVL AC++L  LE+G  VH 
Sbjct: 417 SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHD 476

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  D  VAS ++D Y K                               CG I++
Sbjct: 477 KVIKSGLGSDAFVASTVVDMYCK-------------------------------CGIIDE 505

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +   +  + ++SWN+++ G S N    EA   F  M  + L+ D F+ A+V+  CAN
Sbjct: 506 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++++ELG+Q+  ++    +  D+ IS++LVD Y KCG
Sbjct: 566 LATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG 602



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 201/426 (47%), Gaps = 66/426 (15%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N F  N +++ + +      + ++F+ MP+++  SWN +++ ++ AG++ TA  LF+ MP
Sbjct: 51  NAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP 110

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             + ++WN+++  Y + G  +E+V LF E+    V     D    A ++ +C+ L  L  
Sbjct: 111 DPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSP---DRTTFAVLLKSCSALEELSL 167

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G Q+H+  +  GL+ D   GS+LV++YGK                               
Sbjct: 168 GVQVHALAVKTGLEIDVRTGSALVDMYGK------------------------------- 196

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           C  ++DA   F    + + V W + I+G + N +    L LF +M+R G+     + AS 
Sbjct: 197 CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASA 256

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
             +C+++  L  G+Q+H HA K     D +V +A++D Y+K                   
Sbjct: 257 FRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK------------------- 297

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                          + DA+  F  +PN ++ + N+M+VGL + G  IEA+ LF  M + 
Sbjct: 298 ------------ANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 345

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
            +R D  SL+ V SACA       G+QV       G D D  ++ +++D Y KC  + M+
Sbjct: 346 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL-ME 404

Query: 491 EYYLMQ 496
            Y + Q
Sbjct: 405 AYLIFQ 410



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 134/486 (27%), Positives = 207/486 (42%), Gaps = 112/486 (23%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVM 98
           N +L  Y   G+ + A+ LFD MP  +  SWNA++ G+ + G  ++S+ LF       V 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 99  PQKNDF---------------------------------SWNMLISGFAKAGELKTARTL 125
           P +  F                                 + + L+  + K   L  A   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  MP RN ++W + I   V+N      + LF E+       L       A+   +CA +
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQR---LGLGVSQPSYASAFRSCAAM 263

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
           + L  G+Q+H+H + N    D V+G+++V++Y K                          
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK-------------------------- 297

Query: 246 SGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
              AN   + DARR F    + T +TS    N+M+ G +      EA+ LF  M R+ + 
Sbjct: 298 ---AN--SLTDARRAFFGLPNHTVETS----NAMMVGLVRAGLGIEAMGLFQFMIRSSIR 348

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  +L+ V SAC+       G+QVH  A K G   D+ V +A+LD Y K          
Sbjct: 349 FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGK---------- 398

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                                C  + +A  IF+ M  K  +SWN++I  L QNG   + +
Sbjct: 399 ---------------------CKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTI 437

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             F  M +  ++ D F+  SV+ ACA + SLE G  V  +V   GL SD  +++++VD Y
Sbjct: 438 LHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 497

Query: 482 CKCGFI 487
           CKCG I
Sbjct: 498 CKCGII 503



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 220/494 (44%), Gaps = 105/494 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   +SC     ++ G+QLH H +K    +S   +   ++ +Y +  + TDA   F  +P
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
                + NAM+ G ++ G   +++ LF  M +                            
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 101 ------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K+ F  ++ ++      + K   L  A  +F  M ++++++WN++I    +NG 
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             + +  F E+   L   ++ D F   +V+ ACA L +LEYG  +H  ++ +GL  D+ +
Sbjct: 433 YDDTILHFNEM---LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 489

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            S++V++Y K                               CG +++A+++ DR      
Sbjct: 490 ASTVVDMYCK-------------------------------CGIIDEAQKLHDRIGGQQV 518

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN+++SG+  N E  EA   F +M   G+  D  T A+VL  C++L  +E GKQ+HG 
Sbjct: 519 VSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 578

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  ++DD  ++S L+D Y+K                               CG + D+
Sbjct: 579 IIKQEMLDDEYISSTLVDMYAK-------------------------------CGDMPDS 607

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F  +  +  +SWN+MI G + +G  +EAL +F  M K ++  +  +  +V+ AC+++
Sbjct: 608 LLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 667

Query: 450 SSLELGEQVFARVT 463
              + G + F  +T
Sbjct: 668 GLFDDGCRYFHLMT 681



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 138/286 (48%), Gaps = 31/286 (10%)

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           ++V+G   ++ + + L+ +Y +C     A +V + M   D    + +++ Y++ G ++ A
Sbjct: 43  MVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
             +FD   D   V WN+++SGY       E++ LF +M R GV  D +T A +L +CS+L
Sbjct: 103 VALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSAL 162

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G QVH  A K G+  DV   SAL+D Y K                          
Sbjct: 163 EELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK-------------------------- 196

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                C  ++DA   F  MP ++ +SW + I G  QN   +  L+LF  M +L L + + 
Sbjct: 197 -----CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           S AS   +CA +S L  G Q+ A        SD+++ T++VD Y K
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK 297



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 83/151 (54%)

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G + +  V++ LL  Y++    + A ++F  +   DT+  NTM+T YS  G I  A  +F
Sbjct: 47  GFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP+  ++SWN+++ G  Q G   E++DLF  M +  +  D+ + A ++ +C+ +  L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           LG QV A     GL+ D    ++LVD Y KC
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKC 197


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 192/387 (49%), Gaps = 67/387 (17%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N F+   +++ +AK   ++ A  +F+ MP R+ + WN++I  Y +NGF + A+ L   + 
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
               E  + D+  + +++ A AD+ +L  G+ IH + +  G +       S VN+     
Sbjct: 269 E---EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFE-------SFVNVS---- 314

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                               +AL+  Y+ CG +  AR +FDR T  + V WNSMI GY+ 
Sbjct: 315 --------------------TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQ 354

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N +   A+ +F KM    V     T+   L AC+ LG +E G+ VH              
Sbjct: 355 NGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVH-------------- 400

Query: 342 ASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
                             KL  +L++  D  ++N++I++YS C R++ A  IF  + +K+
Sbjct: 401 ------------------KLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKT 442

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           L+SWN+MI+G +QNG   EA+D FC M   +++ D F++ SVI A A +S L   + +  
Sbjct: 443 LVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHG 502

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFI 487
            V    LD +  ++T+LVD Y KCG +
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAV 529



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 219/492 (44%), Gaps = 111/492 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +  G  ++   +   ++ MY +C    +A  +FD MP R
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTG-VVNMYAKCRLVEEAYKMFDRMPER 239

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKNDFS--------- 105
           +   WN +I G+ + G  + +L+L                 +++P   D           
Sbjct: 240 DLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIH 299

Query: 106 -WNM-------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            ++M             L+  ++K G + TAR +F+ M  +  ++WNSMI  YV+NG   
Sbjct: 300 GYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPG 359

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGA---CADLAALEYGKQIHSHILVNGLDFDSV 208
            A+ +F+++  + VE          TV+GA   CADL  +E G+ +H   L++ L+    
Sbjct: 360 AAMEIFQKMMDEQVEMTN------VTVMGALHACADLGDVEQGRFVHK--LLDQLE---- 407

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LGS                         D   +++LIS Y+ C +++ A  +F+     +
Sbjct: 408 LGS-------------------------DVSVMNSLISMYSKCKRVDIAAEIFENLQHKT 442

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN+MI GY  N    EA+  F KM+   +  D+ T+ SV+ A + L  L   K +HG
Sbjct: 443 LVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHG 502

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              +  +  +V VA+AL+D Y+K                               CG +  
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAK-------------------------------CGAVHT 531

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  M  + + +WN+MI G   +G    AL+LF  M K  ++ ++ +   V+SAC++
Sbjct: 532 ARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSH 591

Query: 449 ISSLELGEQVFA 460
              +E G Q F 
Sbjct: 592 SGLVEEGFQYFG 603



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 170/376 (45%), Gaps = 65/376 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+S F K G L  A  +F  +  +    +++M+  Y RN    +AV  F  +  D V  +
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
               +    ++  C D A L  GK+IH  ++VNG                       A+ 
Sbjct: 175 ---VYNFTYLLKVCGDNADLRKGKEIHCQLIVNGF----------------------ASN 209

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V         F ++ +++ YA C  + +A ++FDR  +   V WN++ISGY  N     A
Sbjct: 210 V---------FAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTA 260

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L L  +M+  G   D+ T+ S+L A + +G L  G+ +HG++ + G    V V++AL+D 
Sbjct: 261 LELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDM 320

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           YSK                               CG +  A+ IF  M  K+++SWNSMI
Sbjct: 321 YSK-------------------------------CGSVGTARLIFDRMTGKTVVSWNSMI 349

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G  QNG P  A+++F  M    + M   ++   + ACA++  +E G  V   +  + L 
Sbjct: 350 DGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELG 409

Query: 469 SDQIISTSLVDFYCKC 484
           SD  +  SL+  Y KC
Sbjct: 410 SDVSVMNSLISMYSKC 425



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 31/246 (12%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + L+S +   G +++A RVF    D    ++++M+ GY  N+   +A+  F +MR +GV 
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
                   +L  C     L  GK++H                               C+L
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIH-------------------------------CQL 201

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                  +   +  ++ +Y+ C  +E+A  +F  MP + L+ WN++I G +QNG    AL
Sbjct: 202 IVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTAL 261

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +L   M +   R D  ++ S++ A A++ SL +G  +       G +S   +ST+LVD Y
Sbjct: 262 ELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMY 321

Query: 482 CKCGFI 487
            KCG +
Sbjct: 322 SKCGSV 327


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 231/529 (43%), Gaps = 117/529 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C +  +++ G+ +H   +  G L S   IA  L+ MY++CG    AL +FD+M   
Sbjct: 447 LLKTCASLSNLYHGRTIHASIVTMG-LQSDPYIATSLINMYVKCGLLGSALQVFDKMSES 505

Query: 71  -----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------NDFSWNM- 108
                +   WN +I+G+ K GH E+ L  F  M +                 N  SW M 
Sbjct: 506 RDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMA 565

Query: 109 ----------------------LISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCYV 145
                                 LI  ++       A +LF  +  R N +AWN MI  +V
Sbjct: 566 GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 625

Query: 146 RNGFAREAVRLF---KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            NG   +++ L+   K  N  LV      AF       AC+    L++G+Q+H       
Sbjct: 626 ENGMWEKSLELYSLAKNENCKLVSASFTGAFT------ACSHGEVLDFGRQVHC------ 673

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
                                     V+ M  + D +  ++L++ YA  G + DA++VFD
Sbjct: 674 -------------------------DVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFD 708

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           +  D    + N+MIS +I N    +AL L++KM+      D+ T++S+LS CS +G  + 
Sbjct: 709 QVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDF 768

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+ VH    K  +  +V + SALL                               T+Y  
Sbjct: 769 GRTVHAEVIKRSMQSNVAIQSALL-------------------------------TMYYK 797

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG  EDA  +F TM  + +++W SMI G  QN    +ALDLF  M K  ++ D   + SV
Sbjct: 798 CGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSV 857

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ISA   + ++ELG  +       GL+SD  ++ SLVD Y K GF +  E
Sbjct: 858 ISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAE 906



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 127/521 (24%), Positives = 232/521 (44%), Gaps = 106/521 (20%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L+ +L  CN       G+Q+H + ++  +      +   L+ MY  C  P +A  LF ++
Sbjct: 550  LSIVLGICNRLSWYMAGRQIHGYIIRN-MFEGDPYLETALIGMYSSCSRPMEAWSLFGKL 608

Query: 68   PRR-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------DFS 105
              R N  +WN MI GF++ G  EKSL+L+++   +N                     DF 
Sbjct: 609  ENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFG 668

Query: 106  WNM------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
              +                  L++ +AK+G ++ A+ +F+ +  +     N+MI  ++ N
Sbjct: 669  RQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGN 728

Query: 148  GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
            G A +A+ L+ ++ +        D+F +++++  C+ + + ++G+ +H+ ++   +  + 
Sbjct: 729  GRAYDALGLYNKMKAG---ETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNV 785

Query: 208  VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
             + S+L+ +Y K                               CG   DA  VF    + 
Sbjct: 786  AIQSALLTMYYK-------------------------------CGSTEDADSVFYTMKER 814

Query: 268  SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
              V W SMI+G+  N    +AL LF  M + GV  D+  + SV+SA   L  +E G  +H
Sbjct: 815  DVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIH 874

Query: 328  GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            G A K G+  DV VA +L+D YSK G    A  +FS +   + +  N+MI+ Y       
Sbjct: 875  GFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCY------- 927

Query: 388  DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                           SW         NG P  +++L   + +    +D  S+ +V+ A +
Sbjct: 928  ---------------SW---------NGLPEMSINLLPQILQHGFYLDSVSITTVLVAVS 963

Query: 448  NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++++L  G+ + A    + + SD  +  +L+D Y KCG +K
Sbjct: 964  SVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLK 1004



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 227/520 (43%), Gaps = 108/520 (20%)

Query: 14   SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
            +C+    +  G+Q+H   +K    +    +   LL MY + G+  DA  +FD++  +   
Sbjct: 658  ACSHGEVLDFGRQVHCDVIKMNFQDDPY-VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVE 716

Query: 74   SWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG----------------- 112
              NAMI  F+  G    +L L+N M       + F+ + L+SG                 
Sbjct: 717  LRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEV 776

Query: 113  ------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                              + K G  + A ++F  M  R+ +AW SMI  + +N   ++A+
Sbjct: 777  IKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDAL 836

Query: 155  RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
             LF+ +     E ++ D+ ++ +VI A   L  +E G  IH   +  GL+ D  +  SLV
Sbjct: 837  DLFRAMEK---EGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLV 893

Query: 215  NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            ++Y K G                          +A   +M     VF    + + V WNS
Sbjct: 894  DMYSKFG--------------------------FAESAEM-----VFSSMPNKNLVAWNS 922

Query: 275  MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
            MIS Y  N     ++ L  ++ ++G   D+ ++ +VL A SS+  L  GK +H +  ++ 
Sbjct: 923  MISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ 982

Query: 335  VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
            +  D+ V +AL+D Y K                               CG ++ A+ IF 
Sbjct: 983  IPSDLQVENALIDMYVK-------------------------------CGCLKYAQLIFE 1011

Query: 395  TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
             MP ++L++WNSMI G   +G+  EA+ LF  M + +   D+ +  ++I++C++   +E 
Sbjct: 1012 NMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEE 1071

Query: 455  GEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
            G  +F  + I  G++       S+VD   + G  ++D+ Y
Sbjct: 1072 GLNLFQLMRIEYGVEPRMEHYASVVDLLGRAG--RLDDAY 1109



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 137/326 (42%), Gaps = 66/326 (20%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           L    F   +++  CA L+ L +G+ IH+ I+  GL  D  + +SL+N+           
Sbjct: 437 LTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINM----------- 485

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-----VMWNSMISGYISN 282
                               Y  CG +  A +VFD+ +++        +WN +I GY   
Sbjct: 486 --------------------YVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKY 525

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               E L  F +M+  G+  D  +L+ VL  C+ L +   G+Q+HG+  +     D  + 
Sbjct: 526 GHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE 585

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +AL+  YS    P +A  LF                     G++E+  +I         +
Sbjct: 586 TALIGMYSSCSRPMEAWSLF---------------------GKLENRSNI---------V 615

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +WN MI G  +NG   ++L+L+      + ++   S     +AC++   L+ G QV   V
Sbjct: 616 AWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDV 675

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIK 488
             +    D  + TSL+  Y K G ++
Sbjct: 676 IKMNFQDDPYVCTSLLTMYAKSGSVE 701



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I   +   + ++AL L  K   + +     T  S+L  C+SL  L HG+ +H     +G+
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             D  +A++L++ Y K G+      L S L+V+D               ++ +++    +
Sbjct: 473 QSDPYIATSLINMYVKCGL------LGSALQVFD---------------KMSESRD---S 508

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
            P+ ++  WN +I G  + G   E L  FC M +L +R D +SL+ V+  C  +S    G
Sbjct: 509 APDITV--WNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAG 566

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            Q+   +     + D  + T+L+  Y  C
Sbjct: 567 RQIHGYIIRNMFEGDPYLETALIGMYSSC 595



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM-----IVGLSQNGSPIEALDLFCNMN 428
           N  + V ++  RI D +      P K+++   ++     I  L Q G   +AL+L     
Sbjct: 378 NVKMPVLTAVARIIDNE----LTPKKAVLELMNLPQVEEIKALVQQGKYSQALELHSKTP 433

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
              L   KF+  S++  CA++S+L  G  + A +  +GL SD  I+TSL++ Y KCG +
Sbjct: 434 HSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLL 492


>gi|255542118|ref|XP_002512123.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549303|gb|EEF50792.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 456

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 189/394 (47%), Gaps = 68/394 (17%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           Q+    P  + F    L   +AK GE++ +R  F++   RN ++W SMI  YV+N    E
Sbjct: 29  QIIKAGP-PDSFVLTGLTDFYAKCGEIECSRCAFDENLDRNVVSWTSMIVGYVQNDCPVE 87

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
            + LF  +   L+E  Q   F L  ++ AC  L AL  GK  H + + +G+  +S L   
Sbjct: 88  GLILFNRMREGLIEGNQ---FTLGILVTACTKLGALHQGKCFHGYAIKSGVQLNSYL--- 141

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                       ++AL+  Y  CG + DAR VFD  +    V W
Sbjct: 142 ----------------------------MTALLDMYVKCGVIRDARSVFDELSSIDLVSW 173

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
            +MI GY  +N   +AL LF   +  G+L +  T+ S L+AC+ +G L  G+ +HG A K
Sbjct: 174 TAMIVGYTQSNLSYDALKLFLDKKWAGILPNDVTIVSALAACARMGNLNLGRSIHGLAIK 233

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G                           F+E       L+N ++ +Y+ C    DA ++
Sbjct: 234 LG---------------------------FAE-----PTLMNALVHMYAKCHMNRDASYL 261

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F T   K ++SWNS+I G SQ GSP EALDLF  M K  +  D  +L SV SACA++ +L
Sbjct: 262 FETASEKDVVSWNSIISGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFSACASLGAL 321

Query: 453 ELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
           ++G  + A     GL S  + +ST+L+ FY KCG
Sbjct: 322 QVGSSLHAYSVKEGLLSSNVYVSTALLTFYAKCG 355



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 213/500 (42%), Gaps = 108/500 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN-------------- 56
            +++C+    I  G++LH   +K G  +S   +   L   Y +CG               
Sbjct: 10  FIRACSELRDIDEGRKLHCQIIKAGPPDSF--VLTGLTDFYAKCGEIECSRCAFDENLDR 67

Query: 57  -----------------PTDALLLFDEMPRR----NCFSWNAMIEGFMKLG--HKEKSLQ 93
                            P + L+LF+ M       N F+   ++    KLG  H+ K   
Sbjct: 68  NVVSWTSMIVGYVQNDCPVEGLILFNRMREGLIEGNQFTLGILVTACTKLGALHQGKCFH 127

Query: 94  LFNVMP--QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            + +    Q N +    L+  + K G ++ AR++F+++   + ++W +MI  Y ++  + 
Sbjct: 128 GYAIKSGVQLNSYLMTALLDMYVKCGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSY 187

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A++LF  L+      L  D  I+ + + ACA +  L  G+ IH   +  G         
Sbjct: 188 DALKLF--LDKKWAGILPNDVTIV-SALAACARMGNLNLGRSIHGLAIKLGF-------- 236

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                  EP    ++AL+  YA C    DA  +F+  ++   V 
Sbjct: 237 ----------------------AEPT--LMNALVHMYAKCHMNRDASYLFETASEKDVVS 272

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNS+ISG        EAL LF +MR+  V  DA TL SV SAC+SLG L+ G  +H ++ 
Sbjct: 273 WNSIISGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFSACASLGALQVGSSLHAYSV 332

Query: 332 KVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
           K G++  +V V++ALL                               T Y+ CG    A+
Sbjct: 333 KEGLLSSNVYVSTALL-------------------------------TFYAKCGDAGSAR 361

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF  M  K+ ++W++MI G    G    +L +F +M + +L+ ++    +++SAC++  
Sbjct: 362 TIFDGMQEKNTVTWSAMIGGYGVQGDAGGSLSIFNDMLRQELKPNEVIFTTILSACSHTG 421

Query: 451 SLELGEQVFARVTIIGLDSD 470
            +  G  +F  +  +  D D
Sbjct: 422 MVGEGWNLFISMCQMRADPD 441



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 144/318 (45%), Gaps = 65/318 (20%)

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           I AC++L  ++ G+++H  I+  G                                 PD 
Sbjct: 11  IRACSELRDIDEGRKLHCQIIKAG--------------------------------PPDS 38

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F L+ L   YA CG++  +R  FD   D + V W SMI GY+ N+   E L+LF++MR  
Sbjct: 39  FVLTGLTDFYAKCGEIECSRCAFDENLDRNVVSWTSMIVGYVQNDCPVEGLILFNRMREG 98

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            +  +  TL  +++AC+ LG L  GK  HG+A K GV  +  + +ALLD Y K       
Sbjct: 99  LIEGNQFTLGILVTACTKLGALHQGKCFHGYAIKSGVQLNSYLMTALLDMYVK------- 151

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                   CG I DA+ +F  + +  L+SW +MIVG +Q+    
Sbjct: 152 ------------------------CGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSY 187

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           +AL LF +     +  +  ++ S ++ACA + +L LG  +      +G  ++  +  +LV
Sbjct: 188 DALKLFLDKKWAGILPNDVTIVSALAACARMGNLNLGRSIHGLAIKLGF-AEPTLMNALV 246

Query: 479 DFYCKCGFIKMDEYYLMQ 496
             Y KC  +  D  YL +
Sbjct: 247 HMYAKC-HMNRDASYLFE 263



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 158/368 (42%), Gaps = 80/368 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  L+ +C    ++H GK  H + +K G+ LNS L  A  LL MY++CG   DA  +FDE
Sbjct: 107 LGILVTACTKLGALHQGKCFHGYAIKSGVQLNSYLMTA--LLDMYVKCGVIRDARSVFDE 164

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKAGELK 120
           +   +  SW AMI G+ +      +L+LF       ++P  ND +    ++  A+ G L 
Sbjct: 165 LSSIDLVSWTAMIVGYTQSNLSYDALKLFLDKKWAGILP--NDVTIVSALAACARMGNLN 222

Query: 121 TART----------------------------------LFNDMPRRNAIAWNSMIHCYVR 146
             R+                                  LF     ++ ++WNS+I    +
Sbjct: 223 LGRSIHGLAIKLGFAEPTLMNALVHMYAKCHMNRDASYLFETASEKDVVSWNSIISGCSQ 282

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G   EA+ LF+ +     E +  DA  L +V  ACA L AL+ G  +H++ +  GL   
Sbjct: 283 MGSPYEALDLFQRMRK---ESVSPDAVTLVSVFSACASLGALQVGSSLHAYSVKEGLLSS 339

Query: 207 SV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           +V + ++L+  Y KCGD  SA  + + M+E +    SA+I GY   G   DA        
Sbjct: 340 NVYVSTALLTFYAKCGDAGSARTIFDGMQEKNTVTWSAMIGGY---GVQGDA-------- 388

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
                                 +L +F+ M R  +  +     ++LSACS  G +  G  
Sbjct: 389 --------------------GGSLSIFNDMLRQELKPNEVIFTTILSACSHTGMVGEGWN 428

Query: 326 VHGHACKV 333
           +    C++
Sbjct: 429 LFISMCQM 436



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +  +C +  ++ VG  LH + +K+G+L+S + ++  LL  Y +CG+   A  +FD M
Sbjct: 308 LVSVFSACASLGALQVGSSLHAYSVKEGLLSSNVYVSTALLTFYAKCGDAGSARTIFDGM 367

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             +N  +W+AMI G+   G    SL +FN M ++    N+  +  ++S  +  G +    
Sbjct: 368 QEKNTVTWSAMIGGYGVQGDAGGSLSIFNDMLRQELKPNEVIFTTILSACSHTGMVGEGW 427

Query: 124 TLFNDMPRRNA 134
            LF  M +  A
Sbjct: 428 NLFISMCQMRA 438


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 235/530 (44%), Gaps = 116/530 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQS     S   G+QLH H +   IL +   +  +L   Y  CG  + A ++FD +  +
Sbjct: 65  LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLK 124

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW-------------------- 106
           N F WN MI G+   G   KSL L+  M     + ++F++                    
Sbjct: 125 NSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVH 184

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L++ +AK G++ TAR +F+ M  R+  +WN+MI  Y +N  + 
Sbjct: 185 SEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSG 244

Query: 152 EAVRLFKELNSDLVER--LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            A  +F     DL+ +  L  D   L  ++ ACADL A++ GK IH + + N +      
Sbjct: 245 TAFLVF-----DLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSI------ 293

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                      G++N              F  ++LI  Y NC  M DARR+F+R     +
Sbjct: 294 -----------GNYNK-------------FFTNSLIEMYCNCNCMVDARRLFERVRWKDT 329

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNSMI GY  N +  E+L LF +M  +G   D  T  +VL AC  +  L +G  +H +
Sbjct: 330 VSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSY 389

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K G   + IV +AL+D YSK                               CG +  +
Sbjct: 390 LVKKGFDANTIVGTALVDMYSK-------------------------------CGSLACS 418

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  MP+KSL+SW++M+ G   +G   EA+ +   M    +  D     S++SAC++ 
Sbjct: 419 RRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHA 478

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI----KMDEYYLM 495
             +  G+++F +     ++ +  +  +L  + C    +     +DE Y++
Sbjct: 479 GLVVEGKEIFYK-----MEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVI 523



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 46/279 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++  GK +H + ++  I N      N L++MY  C    DA  LF+ +  +
Sbjct: 268 LLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWK 327

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ------------------------ 100
           +  SWN+MI G+ + G   +SL+LF  M      P                         
Sbjct: 328 DTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIH 387

Query: 101 ----KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
               K  F  N      L+  ++K G L  +R +F++MP ++ ++W++M+  Y  +G  R
Sbjct: 388 SYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGR 447

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG- 210
           EA+ +   + ++ V     D  +  +++ AC+    +  GK+I  + +    +    L  
Sbjct: 448 EAISILDGMKANSVIP---DNGVFTSILSACSHAGLVVEGKEIF-YKMEKEYNVKPALSH 503

Query: 211 -SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 247
            S +V+L G+ G  + A  ++  M+ +P     +AL++ 
Sbjct: 504 YSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTA 542


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 214/449 (47%), Gaps = 42/449 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  + + G    +  LF+ MP ++  SW  L++ +A  G+L +AR +F+DMPRRNA 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+++  Y+R    R A  LF ++ +        +A     +I   A    L   + ++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAK-------NAVSYGAIISGLAKAEMLHEAELVY 154

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             +     D   V  ++L+  Y + G+   A +V   M   D    SA++ G    G ++
Sbjct: 155 EEMPWQWRD--PVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVS 212

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARRVFD   + + V W SMI GY+      + LLLF  MRR GV  + +TL+  L AC+
Sbjct: 213 EARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACA 272

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +      G Q+H     +G   D+ +  +++  YS+ G   DA + F  ++  D +  N+
Sbjct: 273 AASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNS 332

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ---------------------- 413
           +IT Y     +E+A  +F+ M  K  +SW SM+VG +                       
Sbjct: 333 LITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAW 392

Query: 414 ---------NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
                    NG  + A+  FC M++   + +  + + ++SA A+++ L  G Q  A    
Sbjct: 393 TAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSIN 452

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           +G   D  + TSLV  Y KCG  ++ E Y
Sbjct: 453 MGWVFDSAVHTSLVSMYAKCG--RLAEAY 479



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 219/463 (47%), Gaps = 68/463 (14%)

Query: 59  DALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           +A L+++EMP   R+    NA++ G++++G    +L++F  M  ++  SW+ ++ G  K 
Sbjct: 149 EAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKH 208

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G +  AR +F+ MP RN ++W SMI  YV+ G  R+ + LF  +     E +Q +   L+
Sbjct: 209 GSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR---EGVQVNTTTLS 265

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
             + ACA  +    G QIH+ I+  G + D  LG S++ +Y + G    A +  + M++ 
Sbjct: 266 VALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQK 325

Query: 237 DDFCLSALISGY-------------------------------ANCGKMNDARRVFDRTT 265
           D    ++LI+GY                               AN G M ++  +F++  
Sbjct: 326 DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V W ++IS +I+N +   A+  F +M + G   +    + +LSA +SL  L  G+Q
Sbjct: 386 VKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQ 445

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H ++  +G                                V+D+ +  +++++Y+ CGR
Sbjct: 446 AHAYSINMG-------------------------------WVFDSAVHTSLVSMYAKCGR 474

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           + +A H+F ++ N SLI+ NSMI    Q+G   +AL LF  M     + +  +   +++ 
Sbjct: 475 LAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTG 534

Query: 446 CANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           CA    ++ G   F  +  + G++ +    T +VD   + G +
Sbjct: 535 CARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 36/363 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C        G Q+H   +  G     + + + ++ MY R G   DA   FD M
Sbjct: 264 LSVALDACAAASLAREGIQIHNLIISMG-FELDIFLGDSIIIMYSRFGWMVDAKRAFDCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  SWN++I G+++    E++  LF +M QK+  SW  ++ GFA  G ++ +  LF 
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ +AW ++I  ++ NG    AVR F  ++    E  + +    + ++ A A LA 
Sbjct: 383 QMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQ---EGCKPNTIAFSCLLSALASLAM 439

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q H++ +  G  FDS + +SLV++Y KCG    A  V + +  P    ++++I+ 
Sbjct: 440 LNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITA 499

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +   G + D                               AL LF KM+  G   +  T 
Sbjct: 500 FVQHGFVED-------------------------------ALKLFTKMQNAGYKPNHVTF 528

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             +L+ C+  GF++ G         V GV  +    + ++D   + G+ ++A ++ + + 
Sbjct: 529 LGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP 588

Query: 367 VYD 369
             D
Sbjct: 589 QND 591



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 126/274 (45%), Gaps = 29/274 (10%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 297
           L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F  M R   
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 298 ---NGVL---------------------EDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
              N +L                     ++A +  +++S  +    L   + V+      
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP-- 158

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
               D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP ++++SW SMI G  + G   + L LF NM +  ++++  +L+  + ACA  S   
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            G Q+   +  +G + D  +  S++  Y + G++
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWM 312


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 200/393 (50%), Gaps = 39/393 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N +I  +++LG    + + F+ +P K+  +W  +ISG AK G L  A  L    P RN I
Sbjct: 144 NPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVI 203

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W  +I  Y R G A EAV  F  + SD +E    D   +  ++ ACA L  L +G+ +H
Sbjct: 204 SWTGLISGYSRAGRAAEAVDCFNSMLSDGIEP---DEVTVIGLLSACAQLKDLVFGRSLH 260

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSALISGYANCG 252
             +   G+     L  +L+++Y KCGD   A +V + +   + P  +  +A+I GY   G
Sbjct: 261 KLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSW--NAMIDGYCKLG 318

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            ++ AR +FD+  D   V +NS+I+GYI      EALLLF +MRR+ +  D  T+ S+L+
Sbjct: 319 HVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLT 378

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+SLG L  G+ +H    +  V  D+ + +ALLD Y K                     
Sbjct: 379 ACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLK--------------------- 417

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                     CGR+E+A  +F+ M  + + +W++MI GL+ NG    AL+ F  M     
Sbjct: 418 ----------CGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGF 467

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTII 465
           + +  +  ++++AC++   L+ G   F  + ++
Sbjct: 468 QPNSVTYIAILTACSHSCLLDEGRLYFEEMRLL 500



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 186/395 (47%), Gaps = 8/395 (2%)

Query: 99  PQKNDFSWNMLISGFAKAG--ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL 156
           P       N L++ F       L+ A  LF+ MP    +   ++  C+  +      + L
Sbjct: 31  PPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLIL 90

Query: 157 FKELNSDLVERLQCDAFILATVIGACA-DLAALEYGKQIHSHILVNGLDFDSVLGS-SLV 214
           ++ +    V     DAF    +   CA   A +   + +H+      L     L S  ++
Sbjct: 91  YRRMRRTGV---CTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPII 147

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           ++Y + G    A +  + +   D    + +ISG A  G ++DA  +   +   + + W  
Sbjct: 148 HMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTG 207

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +ISGY       EA+  F+ M  +G+  D  T+  +LSAC+ L  L  G+ +H    + G
Sbjct: 208 LISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKG 267

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIEDAKHIF 393
           ++    +  AL+D Y+K G    A ++F  L +       N MI  Y   G ++ A+++F
Sbjct: 268 MLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLF 327

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             M ++ L+++NS+I G    G   EAL LF  M + DLR D F++ S+++ACA++ +L 
Sbjct: 328 DQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALP 387

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            G  + A +    ++ D  + T+L+D Y KCG ++
Sbjct: 388 QGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVE 422



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 142/316 (44%), Gaps = 69/316 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           LL +C     +  G+ LH    +KG+L S  L +A  L+ MY +CG+   A  +FD + R
Sbjct: 243 LLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVA--LIDMYAKCGDIGRAWEVFDALGR 300

Query: 70  -RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
            R   SWNAMI+G+ KLGH + +  LF+ M  ++  ++N LI+G+   G L+ A  LF  
Sbjct: 301 GRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQ 360

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           M R +                                  L+ D F + +++ ACA L AL
Sbjct: 361 MRRHD----------------------------------LRADNFTMVSLLTACASLGAL 386

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             G+ +H+ I    ++ D  LG++L+++Y KCG    A+ V   M               
Sbjct: 387 PQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMS-------------- 432

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
                      V D  T      W++MI+G   N     AL  F  M+ +G   ++ T  
Sbjct: 433 -----------VRDVHT------WSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYI 475

Query: 309 SVLSACSSLGFLEHGK 324
           ++L+ACS    L+ G+
Sbjct: 476 AILTACSHSCLLDEGR 491



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 19/245 (7%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R D   +  LL +C +  ++  G+ LH   +++ ++   + +   LL MY++CG   +
Sbjct: 365 DLRADNFTMVSLLTACASLGALPQGRALHA-CIEQRLVEVDIYLGTALLDMYLKCGRVEE 423

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK 115
           A L+F  M  R+  +W+AMI G    G  + +L+ F  M     Q N  ++  +++  + 
Sbjct: 424 ASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSH 483

Query: 116 AGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +  L   R  F +M   + I      +  MI    R+G   EA+ L + +       +Q 
Sbjct: 484 SCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMP------MQP 537

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +A I A+++ AC         +    H+L    D D+V    L N+Y     +  A+Q+ 
Sbjct: 538 NAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVY-VQLYNIYIDSRQWEDASQIR 596

Query: 231 NMMKE 235
            +M+E
Sbjct: 597 RLMEE 601


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/525 (28%), Positives = 237/525 (45%), Gaps = 88/525 (16%)

Query: 3   TRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           T  DY+    LL  CN H   +   Q+    +K G  +S L + N L+  Y +      A
Sbjct: 145 TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRLDLA 203

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------- 100
             LF EMP  +  S+NAMI G+ K G  EK++ LF  M                      
Sbjct: 204 CQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGL 263

Query: 101 --------------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                         K +F WN+ +S      ++K   +  AR LF++MP ++ +++N +I
Sbjct: 264 DDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVII 323

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y  +G  + A  LF+EL     +R Q   F  AT++   ++    E G+QIH+  +V 
Sbjct: 324 SGYAWDGKHKYAFDLFRELQFTAFDRKQ---FPFATMLSIASNTLDWEMGRQIHAQTIVT 380

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
             D + ++G+SLV++Y K                               CGK  +A  +F
Sbjct: 381 TADSEILVGNSLVDMYAK-------------------------------CGKFEEAEMIF 409

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
              T  S+V W +MIS Y+      E L LF+KMR+  V+ D +T AS+L A +S+  L 
Sbjct: 410 TNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLS 469

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GKQ+H    K G + +V   SALLD Y+K G   DA + F E+   + +  N MI+ Y+
Sbjct: 470 LGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYA 529

Query: 382 SCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMN---KLDLRM 434
             G  E     F+ M    L    +S+  ++   S +G   E L  F +M    KLD R 
Sbjct: 530 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 589

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           + +  ASV+            E++ A + I   D D+I+ +S+++
Sbjct: 590 EHY--ASVVDMLCRSGRFNEAEKLMAEMPI---DPDEIMWSSVLN 629



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 180/410 (43%), Gaps = 65/410 (15%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N  +  F+K G   ++ QLF  MP KN  S NM+ISG+ K+G L  AR LF+ M  R A+
Sbjct: 56  NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAV 115

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W  +I  Y +    +EA  LF ++     E    D     T++  C          Q+ 
Sbjct: 116 TWTILIGGYSQLNQFKEAFELFVQMQRCGTEP---DYVTFVTLLSGCNGHEMGNQITQVQ 172

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           + I+  G D   ++G++LV+ Y K    + A Q+   M E D    +A+I+GY+  G   
Sbjct: 173 TQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGL-- 230

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                                        D +A+ LF +M+ +G+     T A+VL A  
Sbjct: 231 -----------------------------DEKAVNLFVEMQNSGLKPTEFTFAAVLCANI 261

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L  +  G+Q+H    K   + +V V++ALLD YSK     DA KLF E+   D +  N 
Sbjct: 262 GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNV 321

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           +I+ Y+      D KH +                          A DLF  +        
Sbjct: 322 IISGYAW-----DGKHKY--------------------------AFDLFRELQFTAFDRK 350

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +F  A+++S  +N    E+G Q+ A+  +   DS+ ++  SLVD Y KCG
Sbjct: 351 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCG 400



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 186/457 (40%), Gaps = 111/457 (24%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I +G+Q+H   +K   + +   ++N LL  Y +  +  DA  LFDEMP ++  S+N +I 
Sbjct: 266 IVLGQQIHSFVIKTNFVWNVF-VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS 324

Query: 81  GFMKLGHKEKSLQLFNVMP-----------------QKNDFSWNM--------------- 108
           G+   G  + +  LF  +                    N   W M               
Sbjct: 325 GYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADS 384

Query: 109 -------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                  L+  +AK G+ + A  +F ++  R+A+ W +MI  YV+ GF  E ++LF ++ 
Sbjct: 385 EILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR 444

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
              V     D    A+++ A A +A+L  GKQ+HS I+ +G          + N+     
Sbjct: 445 QASV---IADQATFASLLRASASIASLSLGKQLHSFIIKSGF---------MSNV----- 487

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                            F  SAL+  YA CG + DA + F    D + V WN+MIS Y  
Sbjct: 488 -----------------FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQ 530

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID---- 337
           N E    L  F +M  +G+  D+ +   VLSACS  G +E G        ++  +D    
Sbjct: 531 NGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRRE 590

Query: 338 ------DVIVASALLDTYSK--RGMPSD-----------ACK--------------LFSE 364
                 D++  S   +   K    MP D           AC+              LF+ 
Sbjct: 591 HYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNM 650

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            ++ D      M  +Y++ G+ E+   + + M ++ +
Sbjct: 651 EELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGV 687



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +     K G   D   ++  +  + K G  S A +LF ++   +T+  N MI+ Y   G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           + +A+ +F  M  ++ ++W  +I G SQ     EA +LF  M +     D  +  +++S 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 446 CANISSLELGE---QVFARVTIIGLDSDQIISTSLVDFYCK 483
           C   +  E+G    QV  ++  +G DS  I+  +LVD YCK
Sbjct: 159 C---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK 196


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 233/515 (45%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C +  ++  G+Q+H H +    L +++ ++ RL+ MY +CG   DA  LFD MP +
Sbjct: 120 VLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHK 179

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------------- 102
             F+WNAMI  ++  G    SL+L+  M                                
Sbjct: 180 TIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVH 239

Query: 103 -----------DFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFA 150
                       F  N ++  + K  +L  AR LF+ MP + + ++WNSMI  Y  NG +
Sbjct: 240 GLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQS 299

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+RLF E+       L  + +     + AC D + ++ G  IH+ +L +    +  + 
Sbjct: 300 IEALRLFGEMQK---ASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 356

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+ +Y + G                               KM +A  +F    D  ++
Sbjct: 357 NALIAMYARFG-------------------------------KMGEAANIFYNMDDWDTI 385

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WNSM+SG++ N    EAL  +H+MR  G   D   + S+++A +  G   +G Q+H +A
Sbjct: 386 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYA 445

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  D+ V ++L+D Y+K          F  +K  D                     
Sbjct: 446 MKNGLDSDLQVGNSLVDMYAK----------FCSMKYMDC-------------------- 475

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IF  MP+K ++SW ++I G +QNGS   AL+LF  +    + +D   ++S++ AC+ + 
Sbjct: 476 -IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLK 534

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +   +++ + +   GL SD ++   +VD Y +CG
Sbjct: 535 LISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECG 568



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 237/518 (45%), Gaps = 107/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-R 69
           +L++C        G ++H   +K+G + S + +AN ++ MY +C +   A  LFD MP +
Sbjct: 222 ILKACGLLKDRRCGAEVHGLAIKEGYV-SIVFVANSIVGMYTKCNDLNGARQLFDRMPEK 280

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---------------------------- 101
            +  SWN+MI  +   G   ++L+LF  M +                             
Sbjct: 281 EDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFI 340

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      N F  N LI+ +A+ G++  A  +F +M   + I+WNSM+  +V+NG  
Sbjct: 341 HATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY 400

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA++ + E+  D  ++    A I  ++I A A       G QIH++ + NGLD D  +G
Sbjct: 401 HEALQFYHEMR-DAGQKPDLVAVI--SIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVG 457

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SLV++Y K                   FC       Y +C        +FD+  D   V
Sbjct: 458 NSLVDMYAK-------------------FCSMK----YMDC--------IFDKMPDKDVV 486

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W ++I+G+  N   + AL LF +++  G+  D   ++S+L ACS L  +   K++H + 
Sbjct: 487 SWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYI 546

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            + G + D+++ + ++D Y + G    A ++F  ++  D +   +MI+ Y          
Sbjct: 547 IRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY---------- 595

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                                  NG   EAL+LF  M +  +  D  SL S++SA A++S
Sbjct: 596 ---------------------VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLS 634

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +L+ G+++   +   G   +  ++++LVD Y +CG ++
Sbjct: 635 ALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLE 672



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 176/420 (41%), Gaps = 70/420 (16%)

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
           C S  A+ EG     H   S  LFN +     F    L+  + K G L  A  LF+ MP 
Sbjct: 124 CGSKKALSEGQQVHAHMITSNALFNSV-----FLSTRLVFMYGKCGCLVDAEKLFDGMPH 178

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +    WN+MI  YV NG    ++ L++E+    V  +  DA     ++ AC  L     G
Sbjct: 179 KTIFTWNAMIGAYVTNGEPLGSLELYREMR---VSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
            ++H   +  G      + +S+V +Y KC D N A Q+ + M E +D             
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDV------------ 283

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                             V WNSMIS Y SN +  EAL LF +M++  +  +  T  + L
Sbjct: 284 ------------------VSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAAL 325

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            AC    F++ G  +H    K     +V VA+AL+  Y++ G   +A  +F  +  +DTI
Sbjct: 326 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTI 385

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                                          SWNSM+ G  QNG   EAL  +  M    
Sbjct: 386 -------------------------------SWNSMLSGFVQNGLYHEALQFYHEMRDAG 414

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-CGFIKMD 490
            + D  ++ S+I+A A   +   G Q+ A     GLDSD  +  SLVD Y K C    MD
Sbjct: 415 QKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMD 474



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 213/449 (47%), Gaps = 83/449 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           LQ+C     I  G  +H   LK     +   +AN L+ MY R G   +A  +F  M   +
Sbjct: 325 LQACEDSSFIKQGMFIHATVLKSSYYINVF-VANALIAMYARFGKMGEAANIFYNMDDWD 383

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKNDF------------------------ 104
             SWN+M+ GF++ G   ++LQ ++ M    QK D                         
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443

Query: 105 ------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                         N L+  +AK   +K    +F+ MP ++ ++W ++I  + +NG    
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSR 503

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF+E+    +E +  D  ++++++ AC+ L  +   K+IHS+I+  GL  D VL + 
Sbjct: 504 ALELFREVQ---LEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNG 559

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           +V++YG+CG+ + A ++  +++  D    +++IS Y + G  N                 
Sbjct: 560 IVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLAN----------------- 602

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
                         EAL LFH M+  GV  D+ +L S+LSA +SL  L+ GK++HG   +
Sbjct: 603 --------------EALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIR 648

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS--SCGRIEDAK 390
            G + +  +AS L+D Y++ G    +  +F+ ++  D +L  +MI  Y    CGR   A 
Sbjct: 649 KGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRA--AI 706

Query: 391 HIFRTMPNKSL----ISWNSMIVGLSQNG 415
            +FR M ++S+    I++ +++   S +G
Sbjct: 707 DLFRRMEDESIAPDHIAFVAVLYACSHSG 735



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 143/318 (44%), Gaps = 66/318 (20%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMK 234
           ++V+  C    AL  G+Q+H+H++ +   F+SV L + LV +YGKCG             
Sbjct: 118 SSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG------------- 164

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                CL              DA ++FD     +   WN+MI  Y++N E   +L L+ +
Sbjct: 165 -----CLV-------------DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 206

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           MR +G+  DA T   +L AC  L     G +VHG A K G +  V VA            
Sbjct: 207 MRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVA------------ 254

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQ 413
                              N+++ +Y+ C  +  A+ +F  MP K  ++SWNSMI   S 
Sbjct: 255 -------------------NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG  IEAL LF  M K  L  + ++  + + AC + S ++ G  + A V       +  +
Sbjct: 296 NGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 355

Query: 474 STSLVDFYCKCGFIKMDE 491
           + +L+  Y + G  KM E
Sbjct: 356 ANALIAMYARFG--KMGE 371



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 132/312 (42%), Gaps = 77/312 (24%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G Q+H + +K G L+S L + N L+ MY +  +      +FD+MP ++  SW  +I G  
Sbjct: 438 GMQIHAYAMKNG-LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHA 496

Query: 84  KLGHKEKSLQLFN--------------------------VMPQKNDFSW----------- 106
           + G   ++L+LF                           +   K   S+           
Sbjct: 497 QNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVL 556

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N ++  + + G +  A  +F  +  ++ ++W SMI CYV NG A EA+ LF  +    V
Sbjct: 557 QNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV 616

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           E    D+  L +++ A A L+AL+ GK+IH  ++  G   +  L S+LV++Y +CG    
Sbjct: 617 EP---DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 673

Query: 226 ANQVLNMMKEPDDFCLSALISGYA--NCGK------------------------------ 253
           +  V N ++  D    +++I+ Y    CG+                              
Sbjct: 674 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 733

Query: 254 ---MNDARRVFD 262
              MN+ RR  +
Sbjct: 734 SGLMNEGRRFLE 745



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 125/293 (42%), Gaps = 56/293 (19%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  ++ +L +C+    I   K++H + ++KG+  S L + N ++ +Y  CGN   A
Sbjct: 516 IDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL--SDLVLQNGIVDVYGECGNVDYA 573

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------- 100
             +F+ +  ++  SW +MI  ++  G   ++L+LF++M +                    
Sbjct: 574 ARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASL 633

Query: 101 --------------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                         +  F       + L+  +A+ G L+ +R +FN +  ++ + W SMI
Sbjct: 634 SALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMI 693

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
           + Y  +G  R A+ LF+ +     E +  D      V+ AC+    +  G++      + 
Sbjct: 694 NAYGMHGCGRAAIDLFRRMED---ESIAPDHIAFVAVLYACSHSGLMNEGRR-----FLE 745

Query: 202 GLDFDSVLGS------SLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 247
            + ++  L         LV+L G+      A Q +  M+ EP      AL+  
Sbjct: 746 SMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGA 798


>gi|302816163|ref|XP_002989761.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
 gi|300142538|gb|EFJ09238.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
          Length = 749

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 228/490 (46%), Gaps = 85/490 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL+SC     +  G+++H                 R+L +  + G   D  LL    
Sbjct: 1   LANLLRSCGNSGDLSAGRRIH----------------KRVLDLQRQHGQ--DVFLL---- 38

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                   N +I+ + K G   ++  +F+ +   N FS+N+LI+ +A AG L+ A  +F+
Sbjct: 39  --------NLVIDMYGKCGGLGEARAVFDAIEHPNVFSFNILIASYASAGLLEEAWKIFH 90

Query: 128 DMPRRNAIAWNSMIHCYVRNG-FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
            MP RN ++WN+M+    + G F+R  + L +     L      D     T++  C+ L 
Sbjct: 91  AMPGRNVVSWNTMVSANAQEGDFSRAKIFLARIPQHSLP-----DGITFVTILTGCSHLG 145

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSS--------LVNLYGKCGDFNSANQ-VLNMMKEPD 237
            +  G++    I       +S  G          +V++ G+      A + +     + +
Sbjct: 146 LVSRGREFFRSI-------ESAFGMKPGVEHYCCMVDVLGRAKHLEEAEELIFKTGHDRE 198

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
               + LI  Y  CG + DAR+VFDRT D +   WN M++ Y  N    EAL+L  +M+ 
Sbjct: 199 TRLRNLLIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKD 258

Query: 298 NG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +G  V+ D  T   +L ACS+LG L  G+ +H      G+  +V+VA+A+++ Y K    
Sbjct: 259 SGATVVPDRVTYVILLHACSNLGALREGRMIHASVIVSGMESNVVVATAIVNMYGK---- 314

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                                      CG + DAK +F  MP K +I WNSMI   + NG
Sbjct: 315 ---------------------------CGSMGDAKMVFDKMPAKDVICWNSMISAYALNG 347

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
               ALDL+  M    +R D  +  + + AC+ ++SLE G+++ A ++   L+ + +++T
Sbjct: 348 LGKSALDLYARMRHSCVRPDAGTFVAALDACSVLNSLEDGKKIHAAISASKLEWNVMVAT 407

Query: 476 SLVDFYCKCG 485
           +LV  Y KCG
Sbjct: 408 ALVSMYGKCG 417



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 211/436 (48%), Gaps = 59/436 (13%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL--------FN 96
           N L+QMY  CG+  DA  +FD  P  N FSWN M+  +   GH  ++L L          
Sbjct: 203 NLLIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGAT 262

Query: 97  VMPQKNDF-------------------SWNMLISG--------------FAKAGELKTAR 123
           V+P +  +                     ++++SG              + K G +  A+
Sbjct: 263 VVPDRVTYVILLHACSNLGALREGRMIHASVIVSGMESNVVVATAIVNMYGKCGSMGDAK 322

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+ MP ++ I WNSMI  Y  NG  + A+ L+  +    V   + DA      + AC+
Sbjct: 323 MVFDKMPAKDVICWNSMISAYALNGLGKSALDLYARMRHSCV---RPDAGTFVAALDACS 379

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L +LE GK+IH+ I  + L+++ ++ ++LV++YGKCG    +  V   M+  +    +A
Sbjct: 380 VLNSLEDGKKIHAAISASKLEWNVMVATALVSMYGKCGCLERSIAVFRAMEVRNLISWTA 439

Query: 244 LISGYANCGKMNDARRVFDRTTDTS--SVMWNSMISGYISNNEDTEALLLFHKM----RR 297
           ++   A+ G+   A  +F R  D    +++WN++I+ Y +     EAL L+ +M    RR
Sbjct: 440 MLGALAHNGRDAAALELFARMRDEGREALLWNALIAAYTARGHPREALRLYAEMILAERR 499

Query: 298 NG--VLEDASTLASVLSACSSLG--FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
               V  D +T A+VL AC S+G   L  G+ +H  A       DVIVASAL+  YSK G
Sbjct: 500 GAPPVRPDRNTFAAVLEACGSIGTAALGEGRMIHTQAIARACDTDVIVASALIAMYSKCG 559

Query: 354 MPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMI 408
              DA  +F EL +    +L+ TMI  Y   G++E A  +F  M  + L    I++ S++
Sbjct: 560 SLGDAVAIFRELSRKRSVVLVTTMIAAYGHHGKLELALELFWEMAQRGLKPNRITFVSLL 619

Query: 409 VGLSQNGSPIEALDLF 424
              S   S  EA+  F
Sbjct: 620 SSCSAANSLREAVFYF 635



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 203/423 (47%), Gaps = 51/423 (12%)

Query: 78  MIEGFMKLGHKEKSLQL-FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           M++   +  H E++ +L F     +     N+LI  + + G L  AR +F+  P  N  +
Sbjct: 173 MVDVLGRAKHLEEAEELIFKTGHDRETRLRNLLIQMYGECGSLIDARKVFDRTPDPNIFS 232

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WN M+  Y  NG + EA+ L + +  D    +  D      ++ AC++L AL  G+ IH+
Sbjct: 233 WNIMLAAYAHNGHSNEALVLSQRMK-DSGATVVPDRVTYVILLHACSNLGALREGRMIHA 291

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            ++V+G++ + V+ +++VN+YGK                               CG M D
Sbjct: 292 SVIVSGMESNVVVATAIVNMYGK-------------------------------CGSMGD 320

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A+ VFD+      + WNSMIS Y  N     AL L+ +MR + V  DA T  + L ACS 
Sbjct: 321 AKMVFDKMPAKDVICWNSMISAYALNGLGKSALDLYARMRHSCVRPDAGTFVAALDACSV 380

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           L  LE GK++H       +  +V+VA+AL+  Y K G    +  +F  ++V + I    M
Sbjct: 381 LNSLEDGKKIHAAISASKLEWNVMVATALVSMYGKCGCLERSIAVFRAMEVRNLISWTAM 440

Query: 377 ITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNM------N 428
           +   +  GR   A  +F  M +  +  + WN++I   +  G P EAL L+  M       
Sbjct: 441 LGALAHNGRDAAALELFARMRDEGREALLWNALIAAYTARGHPREALRLYAEMILAERRG 500

Query: 429 KLDLRMDKFSLASVISACANISSLELGE------QVFARVTIIGLDSDQIISTSLVDFYC 482
              +R D+ + A+V+ AC +I +  LGE      Q  AR      D+D I++++L+  Y 
Sbjct: 501 APPVRPDRNTFAAVLEACGSIGTAALGEGRMIHTQAIARAC----DTDVIVASALIAMYS 556

Query: 483 KCG 485
           KCG
Sbjct: 557 KCG 559



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 128/298 (42%), Gaps = 48/298 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+  +S+  GK++H   +    L   + +A  L+ MY +CG    ++ +F  M  RN
Sbjct: 375 LDACSVLNSLEDGKKIHAA-ISASKLEWNVMVATALVSMYGKCGCLERSIAVFRAMEVRN 433

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
             SW AM+      G    +L+LF  M    +    WN LI+ +       TAR      
Sbjct: 434 LISWTAMLGALAHNGRDAAALELFARMRDEGREALLWNALIAAY-------TAR------ 480

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-----LQCDAFILATVIGACAD 184
                             G  REA+RL+ E+   L ER     ++ D    A V+ AC  
Sbjct: 481 ------------------GHPREALRLYAEM--ILAERRGAPPVRPDRNTFAAVLEACGS 520

Query: 185 L--AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL- 241
           +  AAL  G+ IH+  +    D D ++ S+L+ +Y KCG    A  +   +       L 
Sbjct: 521 IGTAALGEGRMIHTQAIARACDTDVIVASALIAMYSKCGSLGDAVAIFRELSRKRSVVLV 580

Query: 242 SALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           + +I+ Y + GK+  A  +F     R    + + + S++S   + N   EA+  F  M
Sbjct: 581 TTMIAAYGHHGKLELALELFWEMAQRGLKPNRITFVSLLSSCSAANSLREAVFYFQIM 638



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 8   LARLLQSCNT--HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            A +L++C +    ++  G+ +H   + +   ++ + +A+ L+ MY +CG+  DA+ +F 
Sbjct: 511 FAAVLEACGSIGTAALGEGRMIHTQAIARAC-DTDVIVASALIAMYSKCGSLGDAVAIFR 569

Query: 66  EMPR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
           E+ R R+      MI  +   G  E +L+LF  M Q+    N  ++  L+S  + A  L+
Sbjct: 570 ELSRKRSVVLVTTMIAAYGHHGKLELALELFWEMAQRGLKPNRITFVSLLSSCSAANSLR 629

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA-VRLFKELNSDLVERLQCDAFILATVI 179
            A   F  M     I   +  + +V +   R   V   +EL + +     C A++  +++
Sbjct: 630 EAVFYFQIMIHDCDIQPGAEHYHFVIDLLGRSGKVAQAEELINSMPFAPGCGAWM--SLL 687

Query: 180 GACADLAALEYGKQ 193
            AC   + +E G++
Sbjct: 688 AACERHSKVELGRR 701


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/591 (24%), Positives = 262/591 (44%), Gaps = 145/591 (24%)

Query: 8   LARLLQSCNTHH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A +L++C+ H   I   +Q+H   +  G+L S + I+N L+ +Y + G    A  +FD 
Sbjct: 114 FASVLRACSGHRIGIRYAEQIHARIICHGLLCSPI-ISNPLIGLYAKNGLIISARKVFDN 172

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS--------------- 105
           +  ++  SW AMI GF + G++E+++ LF       + P    FS               
Sbjct: 173 LCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG 232

Query: 106 ------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N L++ +++     +A  +F+ M  ++ +++NS+I    + 
Sbjct: 233 EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           GF+  A+ LF ++  D    L+ D   +A+++ ACA   AL  G+Q+HS+++  G+  D 
Sbjct: 293 GFSDGALELFTKMKRDY---LKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDM 349

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           ++                                 AL+  Y NC  +  A  +F      
Sbjct: 350 IVEG-------------------------------ALLDLYVNCSDIKTAHEMFLTAQTE 378

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           + V+WN M+  +   +  +E+  +F +M+  G++ +  T  S+L  C+S+G L+ G+Q+H
Sbjct: 379 NVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIH 438

Query: 328 GHACKVG-------------------------VI------DDVIVASALLDTYSKRGMPS 356
               K G                         VI      DDV+  +AL+  Y++  + +
Sbjct: 439 TQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFA 498

Query: 357 DACKLFSEL---------------------------------KVY------DTILLNTMI 377
           +A K F E+                                 + Y      D  + N ++
Sbjct: 499 EALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALV 558

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           ++Y+ CGRI++A   F  +  K  ISWN +I G +Q+G   +AL +F  MN+  L    F
Sbjct: 559 SLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFF 618

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  S +SA ANI++++ G+Q+ A +   G DSD  +S +L+ FY KCG I+
Sbjct: 619 TFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIE 669



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 232/520 (44%), Gaps = 106/520 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C ++ ++  G+QLH + +K GI +S + +   LL +Y+ C +   A  +F   
Sbjct: 317 VASLLSACASNGALCKGEQLHSYVIKAGI-SSDMIVEGALLDLYVNCSDIKTAHEMFLTA 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
              N   WN M+  F KL +  +S ++F  M  K    N F++                 
Sbjct: 376 QTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGE 435

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             ++LI  +AK G+L TA  +   +   + ++W ++I  Y ++ 
Sbjct: 436 QIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHN 495

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++ FKE+   L   +Q D    ++ I ACA + AL  G+QIH+   V+G   D  
Sbjct: 496 LFAEALKHFKEM---LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLS 552

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV+LY                               A CG++ +A   F++     
Sbjct: 553 IGNALVSLY-------------------------------ARCGRIKEAYLEFEKIDAKD 581

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           S+ WN +ISG+  +    +AL +F +M R  +     T  S +SA +++  ++ GKQ+H 
Sbjct: 582 SISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHA 641

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   D+ V++AL                               IT Y+ CG IED
Sbjct: 642 MIIKRGFDSDIEVSNAL-------------------------------ITFYAKCGSIED 670

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+  F  MP K+ +SWN+MI G SQ+G   EA++LF  M ++    +  +   V+SAC++
Sbjct: 671 ARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSH 730

Query: 449 ISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFI 487
           +  +  G   F  ++   GL         +VD   + GF+
Sbjct: 731 VGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFL 770



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 244/525 (46%), Gaps = 108/525 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S+   K+LH   LK G  N ++ + N+L+ +Y   G+    + +F++MP R
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESV-LCNKLVDVYFALGDLDGVVKVFEDMPNR 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS------------------- 105
           +  SW+ +I GFM+     + L LF      NV P +  F+                   
Sbjct: 75  SVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQI 134

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N LI  +AK G + +AR +F+++  +++++W +MI  + +NG+ 
Sbjct: 135 HARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYE 194

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LF E+++     +    ++ ++V+  C  +   + G+Q+H+ +   G   ++ + 
Sbjct: 195 EEAIHLFCEMHT---AGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV LY +  +F SA +V + M+  D+   ++LISG A  G  +D              
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQG-FSDG------------- 297

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
                            AL LF KM+R+ +  D  T+AS+LSAC+S G L  G+Q+H + 
Sbjct: 298 -----------------ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYV 340

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  D+IV  ALLD                               +Y +C  I+ A 
Sbjct: 341 IKAGISSDMIVEGALLD-------------------------------LYVNCSDIKTAH 369

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F T   ++++ WN M+V   +  +  E+  +F  M    L  ++F+  S++  C ++ 
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           +L+LGEQ+  +V   G   +  + + L+D Y K G  K+D  +++
Sbjct: 430 ALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHG--KLDTAHVI 472



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 23/232 (9%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +I  GKQ+H   +K+G  +S + ++N L+  Y +CG+  DA   F EMP +N  SWNAMI
Sbjct: 632 NIKQGKQIHAMIIKRG-FDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMI 690

Query: 80  EGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            G+ + G+  +++ LF  M Q     N  ++  ++S  +  G +      F  M + + +
Sbjct: 691 TGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGL 750

Query: 136 A-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                 +  ++    R GF   A +  +E+       ++ DA I  T++ AC     +E 
Sbjct: 751 VPKPAHYACVVDLISRAGFLSRARKFIEEMP------IEPDATIWRTLLSACTVHKNVEV 804

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM------KEP 236
           G+    H+L    + DS     L N+Y   G ++  +Q   MM      KEP
Sbjct: 805 GEFAAQHLLELEPE-DSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEP 855


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/520 (27%), Positives = 236/520 (45%), Gaps = 87/520 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC     + +G QLH H LK       + +    L MY +C N  DA +LFD   
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSE 301

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
             N  S+NAMI G+ +  H  K+L LF+ +                              
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 101 ------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K+  S      N  I  + K   L  A  +F++M RR+A++WN++I  + +NG 
Sbjct: 362 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 421

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E + LF  +   L  R++ D F   +++ AC    +L YG +IHS I+ +G+  +S +
Sbjct: 422 GYETLFLFVSM---LRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 477

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G SL+++Y KCG    A ++         F   A +SG      M +  ++ ++      
Sbjct: 478 GCSLIDMYSKCGMIEEAEKI------HSRFFQRANVSG-----TMEELEKMHNKRLQEMC 526

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNS+ISGY+   +  +A +LF +M   G+  D  T A+VL  C++L     GKQ+H  
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  +  DV + S L+D YSK                               CG + D+
Sbjct: 587 VIKKELQSDVYICSTLVDMYSK-------------------------------CGDLHDS 615

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F     +  ++WN+MI G + +G   EA+ LF  M   +++ +  +  S++ ACA++
Sbjct: 616 RLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHM 675

Query: 450 SSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
             ++ G + F  +    GLD      +++VD   K G +K
Sbjct: 676 GLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 715



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/558 (24%), Positives = 238/558 (42%), Gaps = 138/558 (24%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ ++ R ++ C    ++ +GKQ H H +  G   +T  + N LLQ+Y    +   A ++
Sbjct: 6   RLLHMTRSVE-CAKQGALELGKQAHAHMIISGFRPTTF-VLNCLLQVYTNSRDFVSASMV 63

Query: 64  FDEMPRRNCFSWNAMI-------------------------------EGFMKLGHKEKSL 92
           FD+MP R+  SWN MI                                G+++ G   KS+
Sbjct: 64  FDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSI 123

Query: 93  QLFNVMPQK-------------------NDFSWNMLISG--------------------F 113
           ++F  M ++                    D S  M I G                    +
Sbjct: 124 EVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMY 183

Query: 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           AK      +  +F  +P +N+++W+++I   V+N     A++ FKE+        Q    
Sbjct: 184 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS--- 240

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           I A+V+ +CA L+ L  G Q+H+H L +    D ++ ++ +++Y KC +           
Sbjct: 241 IYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDN----------- 289

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                               M DA+ +FD + + +   +N+MI+GY       +ALLLFH
Sbjct: 290 --------------------MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFH 329

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           ++  +G+  D  +L+ V  AC+ +  L  G Q++G A K  +  DV VA+A +D Y K  
Sbjct: 330 RLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGK-- 387

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        C  + +A  +F  M  +  +SWN++I    Q
Sbjct: 388 -----------------------------CQALAEAFRVFDEMRRRDAVSWNAIIAAHEQ 418

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG   E L LF +M +  +  D+F+  S++ AC    SL  G ++ + +   G+ S+  +
Sbjct: 419 NGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 477

Query: 474 STSLVDFYCKCGFIKMDE 491
             SL+D Y KCG I+  E
Sbjct: 478 GCSLIDMYSKCGMIEEAE 495



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 230/517 (44%), Gaps = 86/517 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+ C+      +G Q+H   ++ G  ++ +  A+ LL MY +     ++L +F  +
Sbjct: 141 FAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N  SW+A+I G ++      +L+ F  M +                           
Sbjct: 200 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 259

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K+DF+ + ++       +AK   ++ A+ LF++    N  ++N+MI  Y +  
Sbjct: 260 QLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEE 319

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ LF  L S     L  D   L+ V  ACA +  L  G QI+   + + L  D  
Sbjct: 320 HGFKALLLFHRLMSS---GLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 376

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++ +++YGKC     A +V + M+  D                               
Sbjct: 377 VANAAIDMYGKCQALAEAFRVFDEMRRRD------------------------------- 405

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN++I+ +  N +  E L LF  M R+ +  D  T  S+L AC+  G L +G ++H 
Sbjct: 406 AVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHS 464

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  +  V  +L+D YSK GM  +A K+ S       +            G +E+
Sbjct: 465 SIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV-----------SGTMEE 513

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            + +      +  +SWNS+I G        +A  LF  M ++ +  DKF+ A+V+  CAN
Sbjct: 514 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 573

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++S  LG+Q+ A+V    L SD  I ++LVD Y KCG
Sbjct: 574 LASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCG 610


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/520 (27%), Positives = 236/520 (45%), Gaps = 87/520 (16%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC     + +G QLH H LK       + +    L MY +C N  DA +LFD   
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSE 343

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
             N  S+NAMI G+ +  H  K+L LF+ +                              
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403

Query: 101 ------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K+  S      N  I  + K   L  A  +F++M RR+A++WN++I  + +NG 
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E + LF  +   L  R++ D F   +++ AC    +L YG +IHS I+ +G+  +S +
Sbjct: 464 GYETLFLFVSM---LRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 519

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G SL+++Y KCG    A ++         F   A +SG      M +  ++ ++      
Sbjct: 520 GCSLIDMYSKCGMIEEAEKI------HSRFFQRANVSG-----TMEELEKMHNKRLQEMC 568

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNS+ISGY+   +  +A +LF +M   G+  D  T A+VL  C++L     GKQ+H  
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  +  DV + S L+D YSK                               CG + D+
Sbjct: 629 VIKKELQSDVYICSTLVDMYSK-------------------------------CGDLHDS 657

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F     +  ++WN+MI G + +G   EA+ LF  M   +++ +  +  S++ ACA++
Sbjct: 658 RLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHM 717

Query: 450 SSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
             ++ G + F  +    GLD      +++VD   K G +K
Sbjct: 718 GLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 757



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/551 (24%), Positives = 233/551 (42%), Gaps = 137/551 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + + C    ++ +GKQ H H +  G   +T  + N LLQ+Y    +   A ++FD+MP R
Sbjct: 54  VFKECAKQGALELGKQAHAHMIISGFRPTTF-VLNCLLQVYTNSRDFVSASMVFDKMPLR 112

Query: 71  NCFSWNAMI-------------------------------EGFMKLGHKEKSLQLFNVMP 99
           +  SWN MI                                G+++ G   KS+++F  M 
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 172

Query: 100 QK-------------------NDFSWNMLISG--------------------FAKAGELK 120
           ++                    D S  M I G                    +AK     
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 232

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            +  +F  +P +N+++W+++I   V+N     A++ FKE+        Q    I A+V+ 
Sbjct: 233 ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS---IYASVLR 289

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           +CA L+ L  G Q+H+H L +    D ++ ++ +++Y KC +                  
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDN------------------ 331

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                        M DA+ +FD + + +   +N+MI+GY       +ALLLFH++  +G+
Sbjct: 332 -------------MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 378

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  +L+ V  AC+ +  L  G Q++G A K  +  DV VA+A +D Y K         
Sbjct: 379 GFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGK--------- 429

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 C  + +A  +F  M  +  +SWN++I    QNG   E 
Sbjct: 430 ----------------------CQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 467

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L LF +M +  +  D+F+  S++ AC    SL  G ++ + +   G+ S+  +  SL+D 
Sbjct: 468 LFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 526

Query: 481 YCKCGFIKMDE 491
           Y KCG I+  E
Sbjct: 527 YSKCGMIEEAE 537



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 230/517 (44%), Gaps = 86/517 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+ C+      +G Q+H   ++ G  ++ +  A+ LL MY +     ++L +F  +
Sbjct: 183 FAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 241

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N  SW+A+I G ++      +L+ F  M +                           
Sbjct: 242 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 301

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K+DF+ + ++       +AK   ++ A+ LF++    N  ++N+MI  Y +  
Sbjct: 302 QLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEE 361

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ LF  L S     L  D   L+ V  ACA +  L  G QI+   + + L  D  
Sbjct: 362 HGFKALLLFHRLMSS---GLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 418

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++ +++YGKC     A +V + M+  D                               
Sbjct: 419 VANAAIDMYGKCQALAEAFRVFDEMRRRD------------------------------- 447

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN++I+ +  N +  E L LF  M R+ +  D  T  S+L AC+  G L +G ++H 
Sbjct: 448 AVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHS 506

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  +  V  +L+D YSK GM  +A K+ S       +            G +E+
Sbjct: 507 SIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV-----------SGTMEE 555

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            + +      +  +SWNS+I G        +A  LF  M ++ +  DKF+ A+V+  CAN
Sbjct: 556 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 615

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++S  LG+Q+ A+V    L SD  I ++LVD Y KCG
Sbjct: 616 LASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCG 652


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 214/449 (47%), Gaps = 42/449 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  + + G    +  LF+ MP ++  SW  L++ +A  G+L +AR +F+DMPRRNA 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+++  Y+R    R A  LF ++ +        +A     +I   A    L   + ++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAK-------NAVSYGAIISGLAKAEMLHEAELVY 154

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             +     D   V  ++L+  Y + G+   A +V   M   D    SA++ G    G ++
Sbjct: 155 EEMPWQWRD--PVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVS 212

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARRVFD   + + V W SMI GY+      + LLLF  MRR GV  + +TL+  L AC+
Sbjct: 213 EARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACA 272

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +      G Q+H     +G   D+ +  +++  YS+ G   DA + F  ++  D +  N+
Sbjct: 273 AASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNS 332

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ---------------------- 413
           +IT Y     +E+A  +F+ M  K  +SW SM+VG +                       
Sbjct: 333 LITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAW 392

Query: 414 ---------NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
                    NG  + A+  FC M++   + +  + + ++SA A+++ L  G Q  A    
Sbjct: 393 TAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSIN 452

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           +G   D  + TSLV  Y KCG  ++ E Y
Sbjct: 453 MGWVFDSAVHTSLVSMYAKCG--RLAEAY 479



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 219/463 (47%), Gaps = 68/463 (14%)

Query: 59  DALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           +A L+++EMP   R+    NA++ G++++G    +L++F  M  ++  SW+ ++ G  K 
Sbjct: 149 EAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKH 208

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G +  AR +F+ MP RN ++W SMI  YV+ G  R+ + LF  +     E +Q +   L+
Sbjct: 209 GSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR---EGVQVNTTTLS 265

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
             + ACA  +    G QIH+ I+  G + D  LG S++ +Y + G    A +  + M++ 
Sbjct: 266 VALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQK 325

Query: 237 DDFCLSALISGY-------------------------------ANCGKMNDARRVFDRTT 265
           D    ++LI+GY                               AN G M ++  +F++  
Sbjct: 326 DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V W ++IS +I+N +   A+  F +M + G   +    + +LSA +SL  L  G+Q
Sbjct: 386 VKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQ 445

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H ++  +G                                V+D+ +  +++++Y+ CGR
Sbjct: 446 AHAYSINMGW-------------------------------VFDSAVHTSLVSMYAKCGR 474

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           + +A H+F ++ N SLI+ NSMI    Q+G   +AL LF  M     + +  +   +++ 
Sbjct: 475 LAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTG 534

Query: 446 CANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           CA    ++ G   F  +  + G++ +    T +VD   + G +
Sbjct: 535 CARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 36/363 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C        G Q+H   +  G     + + + ++ MY R G   DA   FD M
Sbjct: 264 LSVALDACAAASLAREGIQIHNLIISMG-FELDIFLGDSIIIMYSRFGCMVDAKRAFDCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  SWN++I G+++    E++  LF +M QK+  SW  ++ GFA  G ++ +  LF 
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ +AW ++I  ++ NG    AVR F  ++    E  + +    + ++ A A LA 
Sbjct: 383 QMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQ---EGCKPNTIAFSCLLSALASLAM 439

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q H++ +  G  FDS + +SLV++Y KCG    A  V + +  P    ++++I+ 
Sbjct: 440 LNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITA 499

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +   G + D                               AL LF KM+  G   +  T 
Sbjct: 500 FVQHGFVED-------------------------------ALKLFTKMQNAGYKPNHVTF 528

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             +L+ C+  GF++ G         V GV  +    + ++D   + G+ ++A ++ + + 
Sbjct: 529 LGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP 588

Query: 367 VYD 369
             D
Sbjct: 589 QND 591



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 124/272 (45%), Gaps = 29/272 (10%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 297
           L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F  M R   
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 298 ---NGVL---------------------EDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
              N +L                     ++A +  +++S  +    L   + V+      
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP-- 158

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
               D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP ++++SW SMI G  + G   + L LF NM +  ++++  +L+  + ACA  S   
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAR 278

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            G Q+   +  +G + D  +  S++  Y + G
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFG 310


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 228/517 (44%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL+SC+    + +G Q+H   +K G L   +   + L+ MY +C +  DAL  F  M
Sbjct: 194 FAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYGKCRSLDDALCFFYGM 252

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P RN  SW A I G ++     + L+LF  M +                           
Sbjct: 253 PERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGR 312

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN FS + ++       +AKA  L  AR  F  +P       N+M+   VR G
Sbjct: 313 QLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAG 372

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF+ +   +   ++ D   L+ V  ACA+      G+Q+H   + +G D D  
Sbjct: 373 LGIEAMGLFQFM---IRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 429

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +++++LYGKC     A  +   MK+ D                               
Sbjct: 430 VNNAVLDLYGKCKALMEAYLIFQGMKQKD------------------------------- 458

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV WN++I+    N    + +L F++M R G+  D  T  SVL AC++L  LE+G  VH 
Sbjct: 459 SVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHD 518

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  D  VAS ++D Y K                               CG I++
Sbjct: 519 KVIKSGLGSDAFVASTVVDMYCK-------------------------------CGIIDE 547

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +   +  + ++SWN+++ G S N    EA   F  M  + L+ D F+ A+V+  CAN
Sbjct: 548 AQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 607

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++++ELG+Q+  ++    +  D+ IS++LVD Y KCG
Sbjct: 608 LATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG 644



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 200/424 (47%), Gaps = 66/424 (15%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F  N +++ + +      + ++F+ MP+++  SWN +++ ++ AG++ TA  LF+ MP  
Sbjct: 95  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 154

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           + ++WN+++  Y + G  +E+V LF E+    V     D    A ++ +C+ L  L  G 
Sbjct: 155 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSP---DRTTFAVLLKSCSALEELSLGV 211

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H+  +  GL+ D   GS+LV++YGK                               C 
Sbjct: 212 QVHALAVKTGLEIDVRTGSALVDMYGK-------------------------------CR 240

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            ++DA   F    + + V W + I+G + N +    L LF +M+R G+     + AS   
Sbjct: 241 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 300

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C+++  L  G+Q+H HA K     D +V +A++D Y+K                     
Sbjct: 301 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK--------------------- 339

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                        + DA+  F  +PN ++ + N+M+VGL + G  IEA+ LF  M +  +
Sbjct: 340 ----------ANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSI 389

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           R D  SL+ V SACA       G+QV       G D D  ++ +++D Y KC  + M+ Y
Sbjct: 390 RFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKAL-MEAY 448

Query: 493 YLMQ 496
            + Q
Sbjct: 449 LIFQ 452



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 134/486 (27%), Positives = 207/486 (42%), Gaps = 112/486 (23%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVM 98
           N +L  Y   G+ + A+ LFD MP  +  SWNA++ G+ + G  ++S+ LF       V 
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188

Query: 99  PQKNDF---------------------------------SWNMLISGFAKAGELKTARTL 125
           P +  F                                 + + L+  + K   L  A   
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 248

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  MP RN ++W + I   V+N      + LF E+       L       A+   +CA +
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQR---LGLGVSQPSYASAFRSCAAM 305

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
           + L  G+Q+H+H + N    D V+G+++V++Y K                          
Sbjct: 306 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK-------------------------- 339

Query: 246 SGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
              AN   + DARR F    + T +TS    N+M+ G +      EA+ LF  M R+ + 
Sbjct: 340 ---AN--SLTDARRAFFGLPNHTVETS----NAMMVGLVRAGLGIEAMGLFQFMIRSSIR 390

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  +L+ V SAC+       G+QVH  A K G   D+ V +A+LD Y K          
Sbjct: 391 FDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGK---------- 440

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                                C  + +A  IF+ M  K  +SWN++I  L QNG   + +
Sbjct: 441 ---------------------CKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTI 479

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             F  M +  ++ D F+  SV+ ACA + SLE G  V  +V   GL SD  +++++VD Y
Sbjct: 480 LHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 539

Query: 482 CKCGFI 487
           CKCG I
Sbjct: 540 CKCGII 545



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 220/494 (44%), Gaps = 105/494 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A   +SC     ++ G+QLH H +K    +S   +   ++ +Y +  + TDA   F  +P
Sbjct: 296 ASAFRSCAAMSCLNTGRQLHAHAIKNK-FSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 354

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
                + NAM+ G ++ G   +++ LF  M +                            
Sbjct: 355 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 414

Query: 101 ------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K+ F  ++ ++      + K   L  A  +F  M ++++++WN++I    +NG 
Sbjct: 415 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 474

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             + +  F E+   L   ++ D F   +V+ ACA L +LEYG  +H  ++ +GL  D+ +
Sbjct: 475 YDDTILHFNEM---LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFV 531

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            S++V++Y K                               CG +++A+++ DR      
Sbjct: 532 ASTVVDMYCK-------------------------------CGIIDEAQKLHDRIGGQQV 560

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN+++SG+  N E  EA   F +M   G+  D  T A+VL  C++L  +E GKQ+HG 
Sbjct: 561 VSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQ 620

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  ++DD  ++S L+D Y+K                               CG + D+
Sbjct: 621 IIKQEMLDDEYISSTLVDMYAK-------------------------------CGDMPDS 649

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F  +  +  +SWN+MI G + +G  +EAL +F  M K ++  +  +  +V+ AC+++
Sbjct: 650 LLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHV 709

Query: 450 SSLELGEQVFARVT 463
              + G + F  +T
Sbjct: 710 GLFDDGCRYFHLMT 723



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 31/286 (10%)

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           ++V+G    + + + L+ +Y +C     A +V + M   D    + +++ Y++ G ++ A
Sbjct: 85  MVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 144

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
             +FD   D   V WN+++SGY       E++ LF +M R GV  D +T A +L +CS+L
Sbjct: 145 VALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSAL 204

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  G QVH  A K G+  DV   SAL+D Y K                          
Sbjct: 205 EELSLGVQVHALAVKTGLEIDVRTGSALVDMYGK-------------------------- 238

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                C  ++DA   F  MP ++ +SW + I G  QN   +  L+LF  M +L L + + 
Sbjct: 239 -----CRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 293

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           S AS   +CA +S L  G Q+ A        SD+++ T++VD Y K
Sbjct: 294 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAK 339



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 82/151 (54%)

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G +    V++ LL  Y++    + A ++F  +   DT+  NTM+T YS  G I  A  +F
Sbjct: 89  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 148

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP+  ++SWN+++ G  Q G   E++DLF  M +  +  D+ + A ++ +C+ +  L 
Sbjct: 149 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 208

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           LG QV A     GL+ D    ++LVD Y KC
Sbjct: 209 LGVQVHALAVKTGLEIDVRTGSALVDMYGKC 239


>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Brachypodium distachyon]
          Length = 596

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 229/501 (45%), Gaps = 79/501 (15%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D R+     L+Q C     +  G+QLH   +   ++ S   +A++L+ +Y R     DA 
Sbjct: 13  DPRV--YGHLIQLCADSGHLAAGQQLHARLVALSVIPSNF-LASKLISLYSRTARLHDAR 69

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKS--LQLF---NVMPQK--------------- 101
            +FD +P+ N F+WNA++   + L   E S  L+LF    V P +               
Sbjct: 70  RVFDAIPQPNLFAWNAILIA-LSLHSPEPSAALRLFAGSGVSPDEVTVSALLKSLAASGT 128

Query: 102 ---------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                                + F  N L++ +A  G++++AR +F++MPRR+ ++WNS+
Sbjct: 129 GLSPLVTGEIHALAFLRGFGTDLFVSNGLVTAYANTGDIRSARAVFDEMPRRDVVSWNSL 188

Query: 141 IHCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           I    R G  RE + LF  L  +  +  +Q +   + +V+ +CA L A+++G  +     
Sbjct: 189 ISACTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVLHSCAQLKAVDFGVNVLRVAA 248

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
            +GLD D    +S+V  Y KCG    A ++L  M + D    SA+I+GY N G + +   
Sbjct: 249 ESGLDMDIATWNSVVGFYAKCGRLQHARELLERMPKKDTVSYSAMITGYMNNGHVEEGMS 308

Query: 260 VFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           +F R  D   +  WN++ISG I N   ++ L L H+M    +L +A+TL+ ++ +     
Sbjct: 309 LF-RQADAKGINTWNALISGLIQNGRQSDVLGLLHEMIGASLLPNAATLSIIIPSVPLFS 367

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L   KQ HG+  +        V SAL+D YSK G                         
Sbjct: 368 TLLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGF------------------------ 403

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
                  ++ AK +F    N+S I W S+I  ++ +G    AL LF  M +     D  +
Sbjct: 404 -------LDMAKKVFEWDENRSTIVWTSIIAAVAAHGDVAAALGLFNQMVRAGTCPDTVT 456

Query: 439 LASVISACANISSLELGEQVF 459
              V++ACA++  +    +VF
Sbjct: 457 FTVVLTACAHVGKVAEAREVF 477



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 182/415 (43%), Gaps = 47/415 (11%)

Query: 86  GHKEKSLQL------FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           GH     QL       +V+P  ++F  + LIS +++   L  AR +F+ +P+ N  AWN+
Sbjct: 28  GHLAAGQQLHARLVALSVIP--SNFLASKLISLYSRTARLHDARRVFDAIPQPNLFAWNA 85

Query: 140 -MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
            +I   + +     A+RLF    S +       + +L ++  +   L+ L  G +IH+  
Sbjct: 86  ILIALSLHSPEPSAALRLFA--GSGVSPDEVTVSALLKSLAASGTGLSPLVTG-EIHALA 142

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
            + G   D                                F  + L++ YAN G +  AR
Sbjct: 143 FLRGFGTDL-------------------------------FVSNGLVTAYANTGDIRSAR 171

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR----NGVLEDASTLASVLSAC 314
            VFD       V WNS+IS         E L LF  + R     GV  +  T+ SVL +C
Sbjct: 172 AVFDEMPRRDVVSWNSLISACTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVLHSC 231

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           + L  ++ G  V   A + G+  D+   ++++  Y+K G    A +L   +   DT+  +
Sbjct: 232 AQLKAVDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHARELLERMPKKDTVSYS 291

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
            MIT Y + G +E+   +FR    K + +WN++I GL QNG   + L L   M    L  
Sbjct: 292 AMITGYMNNGHVEEGMSLFRQADAKGINTWNALISGLIQNGRQSDVLGLLHEMIGASLLP 351

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +  +L+ +I +    S+L   +Q    V     D    + ++L+D Y K GF+ M
Sbjct: 352 NAATLSIIIPSVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGFLDM 406



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 105/259 (40%), Gaps = 46/259 (17%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN---------- 96
           ++  YM  G+  + + LF +   +   +WNA+I G ++ G +   L L +          
Sbjct: 293 MITGYMNNGHVEEGMSLFRQADAKGINTWNALISGLIQNGRQSDVLGLLHEMIGASLLPN 352

Query: 97  ------VMPQ------------------KNDFSWN-----MLISGFAKAGELKTARTLFN 127
                 ++P                   +ND+  +      LI  ++KAG L  A+ +F 
Sbjct: 353 AATLSIIIPSVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGFLDMAKKVFE 412

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLA 186
               R+ I W S+I     +G    A+ LF ++    V    C D      V+ ACA + 
Sbjct: 413 WDENRSTIVWTSIIAAVAAHGDVAAALGLFNQM----VRAGTCPDTVTFTVVLTACAHVG 468

Query: 187 ALEYGKQIHSHI-LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 244
            +   +++   +  V G+       + + ++  + G    A +++N M  EP+     AL
Sbjct: 469 KVAEAREVFDSMQTVFGISPVMEQYACIASVLSRAGMLTDALELVNKMPFEPNAKVWGAL 528

Query: 245 ISGYANCGKMNDARRVFDR 263
           ++G A  G +   R  FDR
Sbjct: 529 LNGAAAVGDVQLGRFAFDR 547


>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 524

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 218/439 (49%), Gaps = 47/439 (10%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G   H H LK G   S   I N +L MY +     +A  LFDEM  R+   WN+MI G+ 
Sbjct: 43  GILFHAHILKLG-HQSDPYIRNVILDMYAKHSLIENARKLFDEMTERSLADWNSMICGYW 101

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           K G++ ++  LF++ P++N  +W  +++GF+K  EL +AR  F+DMP +N ++WN++I  
Sbjct: 102 KCGNETEACSLFSMTPERNVITWTAMVTGFSKIKELDSARKYFDDMPVKNIVSWNAIISG 161

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y +NGF  EA++LF   N  +   +Q +    ATVI +C+       G    +   V  L
Sbjct: 162 YAQNGFVEEALKLF---NHMIRLGVQPNETTWATVISSCSSC-----GDPCRAESFVKLL 213

Query: 204 D-----FDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDA 257
           D      +  + ++L+++  KCG+  +A  + N +    +    +A+IS Y   G +  A
Sbjct: 214 DKRKIKMNYFVKTALLDMNAKCGNLEAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSA 273

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSS 316
           R +FD+  +  +V WN+MISGY  N +   A+ LF +M        D  T+ S++SAC  
Sbjct: 274 RDLFDKMPERDAVSWNTMISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGH 333

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           LG LE G  +     +  +   +   +AL+  YSK G   +A ++F E++  D       
Sbjct: 334 LGALELGTWIVNFISEYRIELTISGYNALIFMYSKCGNMKEAQRIFQEMETRD------- 386

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
                                   ++S+NS+I G + +G   EA+ L  +M +  +  D 
Sbjct: 387 ------------------------VVSYNSLIGGFAAHGEGNEAIKLLLSMKEEGVDPDH 422

Query: 437 FSLASVISACANISSLELG 455
            +   V++AC++   +E G
Sbjct: 423 VTYIGVLTACSHAGLVEEG 441



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 36/230 (15%)

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           + LL F K     +  DAS    V+ +    G L      H H  K+G   D  + + +L
Sbjct: 12  DELLSFFKRIYCRIKLDASLYPLVIKSSGKDGIL-----FHAHILKLGHQSDPYIRNVIL 66

Query: 347 DTYSKR-------------------------------GMPSDACKLFSELKVYDTILLNT 375
           D Y+K                                G  ++AC LFS     + I    
Sbjct: 67  DMYAKHSLIENARKLFDEMTERSLADWNSMICGYWKCGNETEACSLFSMTPERNVITWTA 126

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           M+T +S    ++ A+  F  MP K+++SWN++I G +QNG   EAL LF +M +L ++ +
Sbjct: 127 MVTGFSKIKELDSARKYFDDMPVKNIVSWNAIISGYAQNGFVEEALKLFNHMIRLGVQPN 186

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + + A+VIS+C++       E     +    +  +  + T+L+D   KCG
Sbjct: 187 ETTWATVISSCSSCGDPCRAESFVKLLDKRKIKMNYFVKTALLDMNAKCG 236


>gi|302813890|ref|XP_002988630.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
 gi|300143737|gb|EFJ10426.1| hypothetical protein SELMODRAFT_128138 [Selaginella moellendorffii]
          Length = 612

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 220/490 (44%), Gaps = 72/490 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           +I   +RLL+ C    ++  G+++H H + K    +   +AN ++ MY +CG+  +A  +
Sbjct: 16  KIGSYSRLLRWCGEAQALAEGRKIHDH-VSKSDCRADRRLANMVIGMYGKCGSLEEARRV 74

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FD +                              M  +N FSW+ ++S     G+   A 
Sbjct: 75  FDTI-----------------------------AMAHRNLFSWSEMVSACVLNGDYSGAV 105

Query: 124 TLFNDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             F  M     +        MI  ++RNG   +A+ ++  +++   E  + +   L  ++
Sbjct: 106 GFFEKMVEEGVVPDKCLATVMITAHIRNGNPFKALVIYWRMHA---EGFRPNRASLLGLL 162

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA L  LE G++ H+  L +G   D  + ++LVN+YGK                    
Sbjct: 163 AACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGK-------------------- 202

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                      CG + +AR V +     S V WN+MI+ Y  +    EAL L  KM   G
Sbjct: 203 -----------CGSLAEARGVLEGMEVKSVVSWNAMITAYAQHRHGREALELLKKMDLEG 251

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +     T  S+L AC+S G L  G+  H  A   G   DV V + L+  Y K     +A 
Sbjct: 252 IPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCASLDEAR 311

Query: 360 KLFSELKVYD----TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           K+F E+   D     I+ N +I +Y+ CG +E++K +F  +  K ++SWN+M+    Q  
Sbjct: 312 KVFDEMPSRDLLDGNIVANFLINLYAKCGSLENSKCVFDGLKKKDVVSWNAMLTAYIQLD 371

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
           SP EAL LF  M+    + D+ S    + ACA   +   G+   +RV   GLDSD  +  
Sbjct: 372 SPKEALKLFQAMDMEGTKPDQVSYVLALDACAGAVAPTQGKLFHSRVASQGLDSDDTVRN 431

Query: 476 SLVDFYCKCG 485
           ++V+ Y +CG
Sbjct: 432 AIVNMYAECG 441



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 190/445 (42%), Gaps = 73/445 (16%)

Query: 31  FLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           F +K +    +P   +A  ++  ++R GNP  AL+++          W    EGF    +
Sbjct: 107 FFEKMVEEGVVPDKCLATVMITAHIRNGNPFKALVIY----------WRMHAEGFRP--N 154

Query: 88  KEKSLQLFNV------MPQKNDFSWNMLISGF--------------AKAGELKTARTLFN 127
           +   L L         + Q   F    L SGF               K G L  AR +  
Sbjct: 155 RASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEARGVLE 214

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  ++ ++WN+MI  Y ++   REA+ L K+++   +E +        +++ ACA    
Sbjct: 215 GMEVKSVVSWNAMITAYAQHRHGREALELLKKMD---LEGIPPSKVTFVSILDACASSGD 271

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD----DFCLSA 243
           L  G+  HS  +  G   D  + ++LV++YGKC   + A +V + M   D    +   + 
Sbjct: 272 LTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCASLDEARKVFDEMPSRDLLDGNIVANF 331

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           LI+ YA CG + +++ VFD       V WN+M++ YI  +   EAL LF  M   G   D
Sbjct: 332 LINLYAKCGSLENSKCVFDGLKKKDVVSWNAMLTAYIQLDSPKEALKLFQAMDMEGTKPD 391

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             +    L AC+       GK  H             VAS  LD+               
Sbjct: 392 QVSYVLALDACAGAVAPTQGKLFHSR-----------VASQGLDS--------------- 425

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                D  + N ++ +Y+ CG ++ A   F  +  + ++SW  M+   +Q+G+P ++L L
Sbjct: 426 -----DDTVRNAIVNMYAECGNLDAANREFERIKRRDVVSWTVMVAANAQHGNPRDSLKL 480

Query: 424 FCNMNKLDLRMDKFSLASVISACAN 448
           F  M +   + D  S    I +C++
Sbjct: 481 FWKMQQDGTKADDVSFLCAILSCSH 505



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           L+   + + +L  C     L  G+++H H  K     D  +A+ ++  Y K G   +A +
Sbjct: 14  LDKIGSYSRLLRWCGEAQALAEGRKIHDHVSKSDCRADRRLANMVIGMYGKCGSLEEARR 73

Query: 361 LFSELKVYDTILL--NTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLS 412
           +F  + +    L   + M++     G    A   F  M      P+K L +   MI    
Sbjct: 74  VFDTIAMAHRNLFSWSEMVSACVLNGDYSGAVGFFEKMVEEGVVPDKCLAT--VMITAHI 131

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           +NG+P +AL ++  M+    R ++ SL  +++ACA +  LE G +  A     G   D  
Sbjct: 132 RNGNPFKALVIYWRMHAEGFRPNRASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVF 191

Query: 473 ISTSLVDFYCKCG 485
           + T+LV+ Y KCG
Sbjct: 192 VETTLVNMYGKCG 204


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 197/387 (50%), Gaps = 39/387 (10%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N +I  +  LG  + + + F+ +P K+   W  +I G  + G L  AR L    P RN +
Sbjct: 142 NPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 201

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W S+I  Y R G   +AV  F  + SD VE    D   +   + AC+ L  LE+G+ +H
Sbjct: 202 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVEP---DEVAVIGALSACSKLKNLEFGRLLH 258

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSALISGYANCG 252
             +    +     L  +L+++Y KCGD   A  V + +   ++P+ +  + +I GY   G
Sbjct: 259 LLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPW--NVIIDGYCKLG 316

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            ++ AR +FD+      + +NSMI+GYI +    +AL LF ++RR+G+  D  T+ S+L+
Sbjct: 317 HVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLT 376

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+SLG L  G+ +H    +  V +DV + +AL+D Y K                     
Sbjct: 377 ACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMK--------------------- 415

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                     CGR+++A  +F  M  + + +W++MI GL+ NG  ++AL+ FC M +   
Sbjct: 416 ----------CGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGF 465

Query: 433 RMDKFSLASVISACANISSLELGEQVF 459
           +    +  +V++AC++ S L  G Q F
Sbjct: 466 QPTSVTYIAVLTACSHSSLLNEGRQHF 492



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 163/324 (50%), Gaps = 8/324 (2%)

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVL 230
           AF    V   CA  A     + +H+  L   L   + ++ + L+++Y   G  + A +  
Sbjct: 102 AFTFHFVFRCCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAF 161

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           + +   D    + +I G    G +++ARR+  +  + + V W S+I+GY       +A+ 
Sbjct: 162 DEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVY 221

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDT 348
            F+ M  +GV  D   +   LSACS L  LE G+ +H    K  + + D ++V   L+D 
Sbjct: 222 CFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVT--LIDM 279

Query: 349 YSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
           Y+K G  + A  +F  + +       N +I  Y   G ++ A+ +F  M  + +I++NSM
Sbjct: 280 YAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSM 339

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G   +G   +AL LF  + +  +R D F++ S+++ACA++ +L  G  + A +    +
Sbjct: 340 ITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIV 399

Query: 468 DSDQIISTSLVDFYCKCGFIKMDE 491
           + D  + T+LVD Y KCG  ++DE
Sbjct: 400 EEDVYLVTALVDMYMKCG--RVDE 421



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 77/347 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-R 70
           L +C+   ++  G+ LHL   KK I   T  +   L+ MY +CG+   A  +FD + R +
Sbjct: 242 LSACSKLKNLEFGRLLHLLVGKKRI-QMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQ 300

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
               WN +I+G+ KLGH + +  LF+ M  ++  ++N +I+G+  +G L+ A  LF  + 
Sbjct: 301 KPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLR 360

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R                                    ++ D F + +++ ACA L AL  
Sbjct: 361 RHG----------------------------------MRADNFTVVSLLTACASLGALPQ 386

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H+ I    ++ D  L ++LV++Y KCG  + A  V + M E D    SA+I+G A 
Sbjct: 387 GRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLA- 445

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                          N    +AL  F +M+R+G    + T  +V
Sbjct: 446 ------------------------------FNGMGMDALESFCQMKRDGFQPTSVTYIAV 475

Query: 311 LSACSSLGFLEHGKQ----------VHGHACKVGVIDDVIVASALLD 347
           L+ACS    L  G+Q          +H      G + D++  S LLD
Sbjct: 476 LTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLD 522


>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 234/523 (44%), Gaps = 106/523 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C   +S+  GK++H      GI    L +  +L+ MY+ CG+  +  ++FD++   
Sbjct: 105 ILQLCAELNSLQEGKKVHSFISSSGIFVDGL-LGTKLVFMYVNCGDIREGRVIFDKIANE 163

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFS------------------W-- 106
             F WN M+ G+ K+G  E+S+ LF  M     Q N  +                  W  
Sbjct: 164 KVFLWNLMLSGYAKIGAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVH 223

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LIS + K  +++ A  +F+++  R+ ++WNSMI   V N    
Sbjct: 224 GYLLKLGFGSYNTVVNSLISFYFKTRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPE 283

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           + +++FKE+   L   +  D   L  V+ ACA+      G+ +H+  +   LD      +
Sbjct: 284 KGIQVFKEM---LYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVN 340

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y KC                               G +N+A RVF +  + S V 
Sbjct: 341 TLLDMYSKC-------------------------------GDLNNAIRVFQKMGERSVVS 369

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+I+GY       E + LFH+M R GV  D  T+ +VL AC+  G LE GK VH +  
Sbjct: 370 WTSLIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVK 429

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  D IV ++L+D Y+K G   DA  +F E+   D +  NTMI  YS  GR      
Sbjct: 430 ENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGYSKNGR------ 483

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                    P E L LF  M + +L+ D  ++A ++ ACA++++
Sbjct: 484 -------------------------PNETLHLFVAMVQ-ELKPDGRTMACILPACASLAA 517

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           L+ G ++   +   G   D  ++ +L+D Y KCG + +   + 
Sbjct: 518 LDRGREIHGYIQRNGCFDDLHVANALIDMYAKCGALALARLFF 560



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 183/431 (42%), Gaps = 108/431 (25%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  G+ +H + LK G   S   + N L+  Y +      A  +FDE+  R+  SWN+MI
Sbjct: 215 SVKEGEWVHGYLLKLG-FGSYNTVVNSLISFYFKTRKIEAAYEVFDELKNRDIVSWNSMI 273

Query: 80  EGFMKLGHKEKSLQLFNVM----------------------------------------P 99
            G +     EK +Q+F  M                                         
Sbjct: 274 SGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQLD 333

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q+  F  N L+  ++K G+L  A  +F  M  R+ ++W S+I  Y R G + E +RLF E
Sbjct: 334 QRMTFV-NTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFHE 392

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +     E ++ D F +  V+ ACA   +LE GK +H ++  N +  D ++ +SL+++Y K
Sbjct: 393 MER---EGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAK 449

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                          CG M DA  VF    +   V WN+MI GY
Sbjct: 450 -------------------------------CGSMEDANLVFLEMPNKDIVSWNTMIGGY 478

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             N    E L LF  M +  +  D  T+A +L AC+SL  L+ G+++HG+  + G  DD+
Sbjct: 479 SKNGRPNETLHLFVAMVQE-LKPDGRTMACILPACASLAALDRGREIHGYIQRNGCFDDL 537

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            VA+AL+D Y+K                               CG +  A+  F  +P K
Sbjct: 538 HVANALIDMYAK-------------------------------CGALALARLFFDMIPVK 566

Query: 400 SLISWNSMIVG 410
            LISW  MI G
Sbjct: 567 DLISWTVMIAG 577



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C +  ++  G+++H +  + G  +  L +AN L+ MY +CG    A L FD +
Sbjct: 505 MACILPACASLAALDRGREIHGYIQRNGCFDD-LHVANALIDMYAKCGALALARLFFDMI 563

Query: 68  PRRNCFSWNAMIEG 81
           P ++  SW  MI G
Sbjct: 564 PVKDLISWTVMIAG 577



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 18/115 (15%)

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS---PIEALDLFCNMNKLDLR 433
           ++++SS  + ED K          +  +N  I  L + GS    IE LD++   N     
Sbjct: 52  LSIFSSPAKEEDFK----------IADFNRKICELCEVGSLKNAIELLDMYPKSN----- 96

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +D  +  S++  CA ++SL+ G++V + ++  G+  D ++ T LV  Y  CG I+
Sbjct: 97  IDSNTYCSILQLCAELNSLQEGKKVHSFISSSGIFVDGLLGTKLVFMYVNCGDIR 151


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 228/484 (47%), Gaps = 51/484 (10%)

Query: 5   IDYLARL-LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            D+L R  L+ C  + ++   + L     ++ +++      N +L  Y + G   +A  +
Sbjct: 29  FDFLERHDLRGCVRYRNLRAARLLFDQMPERDVVS-----WNAMLSGYAQNGYVKEAKEI 83

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FDEMP +N  SWN M+  +++ G  E + +LF         SWN ++ G+ K   L  AR
Sbjct: 84  FDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDAR 143

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+ MP R+ ++WN+MI  Y +NG   EA RLF+E           D F    ++    
Sbjct: 144 GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR-------DVFTWTAMVSGYV 196

Query: 184 DLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
               L+  +++      +G+ + +SV  ++++  Y +C   + A ++   M   +    +
Sbjct: 197 QNGMLDEARRV-----FDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWN 251

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
            +I+GYA  G +  AR  FDR     S+ W ++I+GY  +    EAL LF +M+R+G   
Sbjct: 252 TMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL 311

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           + ST  S LS C+ +  LE GKQVHG   K G+     V +ALL  Y K G   DA  +F
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 371

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             ++  + +  NTMI  Y        A+H F                         EAL 
Sbjct: 372 EGIEEKEVVSWNTMIAGY--------ARHGFGK-----------------------EALM 400

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFY 481
           LF +M K  +  D  ++  V+SAC++   ++ G + F  +T   G+ ++    T ++D  
Sbjct: 401 LFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLL 460

Query: 482 CKCG 485
            + G
Sbjct: 461 GRAG 464



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 185/361 (51%), Gaps = 42/361 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y++ G   +A  +FD MP +N  SWNA+I G+++    +++ +LF  MP +N  SW
Sbjct: 191 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW 250

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +I+G+A+ G++  AR  F+ MP+R++I+W ++I  Y ++G+  EA+ LF E+  D  E
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRD-GE 309

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           RL    F   + +  CA++AALE GKQ+H  ++  GL+    +G++L+ +Y KC      
Sbjct: 310 RLNRSTF--TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC------ 361

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                    G ++DA  VF+   +   V WN+MI+GY  +    
Sbjct: 362 -------------------------GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGK 396

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASAL 345
           EAL+LF  M++ G+L D  T+  VLSACS  G ++ G +  +      G+  +    + +
Sbjct: 397 EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCM 456

Query: 346 LDTYSKRGMPSDACKLFSELK------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           +D   + G   DA  L   +        +  +L  + I   +  G  + AK IF   P+ 
Sbjct: 457 IDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE-KAAKMIFEMEPDN 515

Query: 400 S 400
           S
Sbjct: 516 S 516



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 185/394 (46%), Gaps = 54/394 (13%)

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           DF     + G  +   L+ AR LF+ MP R+ ++WN+M+  Y +NG+ +EA  +F E+  
Sbjct: 30  DFLERHDLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-- 87

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                              C                  N + ++ +L + + N     G 
Sbjct: 88  ------------------PCK-----------------NSISWNGMLAAYVQN-----GR 107

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A ++     + +    + ++ GY    ++ DAR +FDR  +   V WN+MISGY  N
Sbjct: 108 IEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQN 167

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIV 341
            E  EA  LF +      + D  T  +++S     G L+  ++V  G   K  V  + I+
Sbjct: 168 GELLEAQRLFEE----SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAII 223

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           A      Y +      A +LF  +   +    NTMIT Y+  G I  A++ F  MP +  
Sbjct: 224 AG-----YVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDS 278

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ISW ++I G +Q+G   EAL LF  M +   R+++ +  S +S CA I++LELG+QV  R
Sbjct: 279 ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGR 338

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           V   GL+S   +  +L+  YCKCG I  D+ Y++
Sbjct: 339 VVKAGLESGCYVGNALLVMYCKCGNI--DDAYIV 370


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 196/395 (49%), Gaps = 37/395 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAR 151
           ++F+ + +K++ SW  +++G+ K G       L   M      +A+N+MI  YV  GF +
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ + + + S  +E    D F   +VI ACA    L+ GKQ+H+++L    DF     +
Sbjct: 269 EALEMVRRMVSSGIE---LDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDN 324

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SLV+LY KCG F+ A  +   M   D    +AL+SGY + G + +A+ +F    + + + 
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W  MISG   N    E L LF  M+R G        +  + +C+ LG   +G+Q H    
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K+G  D  + A                               N +IT+Y+ CG +E+A+ 
Sbjct: 445 KIG-FDSSLSAG------------------------------NALITMYAKCGVVEEARQ 473

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +FRTMP    +SWN++I  L Q+G   EA+D++  M K  +R D+ +L +V++AC++   
Sbjct: 474 VFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGL 533

Query: 452 LELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           ++ G + F  + T+  +         L+D  C+ G
Sbjct: 534 VDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSG 568



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 219/436 (50%), Gaps = 14/436 (3%)

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
           ++ F   PR +    N +I+ + K      + QLF+ + + +  +   ++SG+  +G++ 
Sbjct: 40  IITFGFQPRAHIL--NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDIT 97

Query: 121 TARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            AR +F   P   R+ + +N+MI  +  N     A+ LF ++     E  + D F  A+V
Sbjct: 98  LARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKH---EGFKPDNFTFASV 154

Query: 179 IGACADLAALEYG-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGD----FNSANQVLNMM 233
           +   A +A  E    Q H+  L +G  + + + ++LV++Y KC       +SA +V + +
Sbjct: 155 LAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEI 214

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLF 292
            E D+   + +++GY   G  +    + +   D    V +N+MISGY++     EAL + 
Sbjct: 215 LEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMV 274

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            +M  +G+  D  T  SV+ AC++ G L+ GKQVH +  +          ++L+  Y K 
Sbjct: 275 RRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS-FHFDNSLVSLYYKC 333

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G   +A  +F ++   D +  N +++ Y S G I +AK IF+ M  K+++SW  MI GL+
Sbjct: 334 GKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLA 393

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           +NG   E L LF  M +       ++ +  I +CA + +   G+Q  A++  IG DS   
Sbjct: 394 ENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLS 453

Query: 473 ISTSLVDFYCKCGFIK 488
              +L+  Y KCG ++
Sbjct: 454 AGNALITMYAKCGVVE 469



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 146/315 (46%), Gaps = 67/315 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C T   + +GKQ+H + L++   + +    N L+ +Y +CG   +A  +F++MP +
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRRE--DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK 349

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWNA++ G++  GH  ++  +F  M +KN  SW ++ISG A+               
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAE--------------- 394

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                           NGF  E ++LF  +  +  E   CD +  +  I +CA L A   
Sbjct: 395 ----------------NGFGEEGLKLFSCMKREGFE--PCD-YAFSGAIKSCAVLGAYCN 435

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q H+ +L  G D     G++L+ +Y KCG    A QV   M      CL         
Sbjct: 436 GQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP-----CL--------- 481

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                             SV WN++I+    +    EA+ ++ +M + G+  D  TL +V
Sbjct: 482 -----------------DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTV 524

Query: 311 LSACSSLGFLEHGKQ 325
           L+ACS  G ++ G++
Sbjct: 525 LTACSHAGLVDQGRK 539



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           ++SC    +   G+Q H   LK G  +S+L   N L+ MY +CG   +A  +F  MP  +
Sbjct: 424 IKSCAVLGAYCNGQQYHAQLLKIG-FDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLD 482

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             SWNA+I    + GH  +++ ++  M +K    +  +   +++  + AG +   R  F+
Sbjct: 483 SVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFD 542

Query: 128 DM 129
            M
Sbjct: 543 SM 544


>gi|302814049|ref|XP_002988709.1| hypothetical protein SELMODRAFT_128498 [Selaginella moellendorffii]
 gi|300143530|gb|EFJ10220.1| hypothetical protein SELMODRAFT_128498 [Selaginella moellendorffii]
          Length = 573

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/392 (29%), Positives = 204/392 (52%), Gaps = 47/392 (11%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++ +AK G +  AR+LF+ M  ++  +WN+MI  Y       EA  LF+ ++   +E
Sbjct: 49  NSLVNLYAKCGRIDDARSLFDGMQVKSLASWNAMIAGYAHLDLGDEAFDLFRCID---LE 105

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            L  D      ++GAC+    ++ G+ IH+ +   GLD + VL ++L+++Y K       
Sbjct: 106 GLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLATALLDMYAK------- 158

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT-SSVMWNSMISGYISNNED 285
                                   CG +  AR VF    D  + V WN+MI+  +     
Sbjct: 159 ------------------------CGSIEGARSVFASMADNKNQVSWNAMIAARVEYGHP 194

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA+ L+H+M   G+  +A T ASVL AC  +   E G Q+H  A   G  DD +V +AL
Sbjct: 195 DEAMYLYHQMHLQGLKPNAFTSASVLGACVCV---EQGMQIHSWAMSCGFEDDPVVRTAL 251

Query: 346 LDTYSKRGMPSDACKLFSE--------LKVYDTILL-NTMITVYSSCGRIEDAKHIFRTM 396
           ++ YSK G   +A K+F++        +  +D+I+L N++I +Y+ CG +++A+  F +M
Sbjct: 252 VNMYSKFGRLEEAAKVFADGQGFQNDPVAGHDSIVLQNSIINMYARCGSLDEARACFDSM 311

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P +S++SWN ++ G  +     E+L L   M+   +  + F+ + V +AC+ +  L  G 
Sbjct: 312 PRRSVVSWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLRAGR 371

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +R+   G D+D+++ T+L+D Y +CG ++
Sbjct: 372 AAHSRIVASGFDTDRVVVTALMDMYGRCGSVE 403



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/522 (27%), Positives = 234/522 (44%), Gaps = 92/522 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H   +  G+    + + N L+ +Y +CG   DA  LFD M  ++  SWNAMI G+ 
Sbjct: 29  GQEIHRRIVDSGMTPDVV-VHNSLVNLYAKCGRIDDARSLFDGMQVKSLASWNAMIAGYA 87

Query: 84  KLGHKEKSLQLFNVM---------------------PQKNDFSWNM-------------- 108
            L   +++  LF  +                     P+  D   N+              
Sbjct: 88  HLDLGDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDSNLV 147

Query: 109 ----LISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
               L+  +AK G ++ AR++F  M   +N ++WN+MI   V  G   EA+ L+ +++  
Sbjct: 148 LATALLDMYAKCGSIEGARSVFASMADNKNQVSWNAMIAARVEYGHPDEAMYLYHQMH-- 205

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            ++ L+ +AF  A+V+GAC     +E G QIHS  +  G + D V+ ++LVN+Y K G  
Sbjct: 206 -LQGLKPNAFTSASVLGACV---CVEQGMQIHSWAMSCGFEDDPVVRTALVNMYSKFGRL 261

Query: 224 NSANQVL----NMMKEP----DDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
             A +V         +P    D   L +++I+ YA CG +++AR  FD     S V WN 
Sbjct: 262 EEAAKVFADGQGFQNDPVAGHDSIVLQNSIINMYARCGSLDEARACFDSMPRRSVVSWNV 321

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           ++SGY+   +  E+L L   M   G+  +A T + V +ACS L  L  G+  H      G
Sbjct: 322 LMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLRAGRAAHSRIVASG 381

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
              D +V +AL+D Y +                               CG +E A+  F 
Sbjct: 382 FDTDRVVVTALMDMYGR-------------------------------CGSVEAARRTFD 410

Query: 395 TMPNK-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            M  +      ++SWN+M+   S +G P EAL+LF  M       ++ SL  V+ AC + 
Sbjct: 411 DMRRRCSTRVDVVSWNAMMGLYSHHGQPREALELFGEMGLAGEAGNEVSLTLVLHACTHA 470

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             +    +  AR    G+   +     +VD   + G +++ E
Sbjct: 471 GLVADAVEALARGVEAGIVPSREHYACVVDVLARAGKLEVAE 512



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 158/324 (48%), Gaps = 66/324 (20%)

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           E +Q D F+ ++V+GA   +  L+ G++IH  I+ +G+  D V+ +SLVNLY K      
Sbjct: 4   EGVQPDMFVYSSVVGAYCAVGDLQRGQEIHRRIVDSGMTPDVVVHNSLVNLYAK------ 57

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG+++DAR +FD     S   WN+MI+GY   +  
Sbjct: 58  -------------------------CGRIDDARSLFDGMQVKSLASWNAMIAGYAHLDLG 92

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA  LF  +   G+  D  T  ++L ACS+  F++ G+ +H     +G+  ++++A+AL
Sbjct: 93  DEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLATAL 152

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISW 404
           LD Y+K                               CG IE A+ +F +M  NK+ +SW
Sbjct: 153 LDMYAK-------------------------------CGSIEGARSVFASMADNKNQVSW 181

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N+MI    + G P EA+ L+  M+   L+ + F+ ASV+ AC  +   E G Q+ +    
Sbjct: 182 NAMIAARVEYGHPDEAMYLYHQMHLQGLKPNAFTSASVLGACVCV---EQGMQIHSWAMS 238

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
            G + D ++ T+LV+ Y K G ++
Sbjct: 239 CGFEDDPVVRTALVNMYSKFGRLE 262



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 31/194 (15%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+  GV  D    +SV+ A  ++G L+ G+++H      G+  DV+V ++L++ Y+K G 
Sbjct: 1   MQEEGVQPDMFVYSSVVGAYCAVGDLQRGQEIHRRIVDSGMTPDVVVHNSLVNLYAKCGR 60

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             DA  LF  ++V                               KSL SWN+MI G +  
Sbjct: 61  IDDARSLFDGMQV-------------------------------KSLASWNAMIAGYAHL 89

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               EA DLF  ++   L  D  +  +++ AC+    ++ G  + ARV  +GLDS+ +++
Sbjct: 90  DLGDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLA 149

Query: 475 TSLVDFYCKCGFIK 488
           T+L+D Y KCG I+
Sbjct: 150 TALLDMYAKCGSIE 163


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 222/484 (45%), Gaps = 106/484 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G  +  L +   L+ MY++ G   DA  +FD+   R
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLG-YDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 152

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A+I+G+   G+ E + +LF+ +P K+  SWN +ISG+A+ G  K A  LF DM 
Sbjct: 153 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 212

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           + N                                  ++ D   + TV+ ACA   ++E 
Sbjct: 213 KTN----------------------------------VRPDESTMVTVVSACAQSGSIEL 238

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+H  I  +G   +  + ++L++LY KCG+  +A                        
Sbjct: 239 GRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETA------------------------ 274

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG       +F+  +    + WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 275 CG-------LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 327

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+ LG ++ G+ +H +  K   +  V  AS+                          
Sbjct: 328 LPACAHLGAIDIGRWIHVYINK--RLKGVTNASS-------------------------- 359

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            LL ++I +Y+ CG IE AK +F +M  +SL SWN+MI G + +G    A DLF  M K 
Sbjct: 360 -LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKN 418

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC------KC 484
            +  D  +   ++SAC++   L+LG  +F  ++      D  I+  L  + C       C
Sbjct: 419 GIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS-----QDYKITPKLEHYGCMIDLLGHC 473

Query: 485 GFIK 488
           G  K
Sbjct: 474 GLFK 477



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 178/372 (47%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  +     A+ L+  + S     L  + +    +
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMIS---LGLLPNCYTFPFL 94

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   A   G+QIH H+L  G D D  + +SL+++Y + G    A +V +     D 
Sbjct: 95  LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI GYA+ G + +A+++FD       V WN+MISGY       EAL LF  M + 
Sbjct: 155 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 214

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ +V+SAC+  G +E G+QVH      G   ++ + +AL+D YSK G    A
Sbjct: 215 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETA 274

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I  NT+I  Y+     ++A  +F+ M              L    SP 
Sbjct: 275 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM--------------LRSGESP- 319

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
                           +  ++ S++ ACA++ ++++G    V+    + G+ +   + TS
Sbjct: 320 ----------------NDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTS 363

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 364 LIDMYAKCGDIE 375



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 120/286 (41%), Gaps = 57/286 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C    SI +G+Q+HL     G   S L I N L+ +Y +CG    A  LF+ +
Sbjct: 223 MVTVVSACAQSGSIELGRQVHLWIDDHG-FGSNLKIVNALIDLYSKCGEVETACGLFEGL 281

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFS------------------ 105
             ++  SWN +I G+  +   +++L LF  M       ND +                  
Sbjct: 282 SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGR 341

Query: 106 W-------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
           W                     LI  +AK G+++ A+ +F+ M  R+  +WN+MI  +  
Sbjct: 342 WIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAM 401

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G A  A  LF ++  + ++    D      ++ AC+    L+ G+ I        +  D
Sbjct: 402 HGKANAAFDLFSKMRKNGIDP---DDITFVGLLSACSHSGMLDLGRHI-----FRSMSQD 453

Query: 207 SVLGSSL------VNLYGKCGDFNSANQVLNMMK-EPDDFCLSALI 245
             +   L      ++L G CG F  A +++  M  EPD     +L+
Sbjct: 454 YKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLL 499


>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
          Length = 583

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 224/487 (45%), Gaps = 105/487 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
           +AN L+  Y R    +DA  +FDEMP R+  SW AM+  ++KLGH  + ++LF  M    
Sbjct: 84  VANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSG 143

Query: 100 -QKNDFS----------------------------WNMLISG------FAKAGELKTART 124
            Q N  +                            W+ +I        +A+ G++ +A  
Sbjct: 144 VQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASA 203

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ M  R+ I+W +MI  YV++G   +A+R+F E+ S   E  + + F + +V+ ACA+
Sbjct: 204 IFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVS---EGFRPNEFTVCSVLKACAE 260

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
             A+ +GKQ+H                        C        VL  M + D    SAL
Sbjct: 261 EKAVRFGKQLH------------------------CA-------VLKKMYKNDIHIGSAL 289

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           ++ YA CG++ DA+ VFD     +++ W SMISGY  +    +A+LLF KM+   V  + 
Sbjct: 290 VTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNN 349

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  +LSAC SL     GK++H    K  + +++ + S                     
Sbjct: 350 LTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGS--------------------- 388

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                     T++  Y  CG    A  I   MP++  ISW ++I G +  G  +EAL   
Sbjct: 389 ----------TLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSL 438

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +M    ++ + ++ +S + ACA + +L+ G ++   V      S+  + +SL+D Y +C
Sbjct: 439 DDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRC 498

Query: 485 GFIKMDE 491
           G  K+DE
Sbjct: 499 G--KVDE 503



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 218/478 (45%), Gaps = 106/478 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC       +G+Q+H   +K G  N  +  A  +   Y +CG+   A  +FD+M  R
Sbjct: 154 LLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSA--IAHFYAQCGDVASASAIFDKMAYR 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS--------------------- 105
           +  SW  MI  +++ GH  ++L++F+ M     + N+F+                     
Sbjct: 212 DVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLH 271

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + L++ +A+ GE+  A+ +F+ MPRRN I W SMI  Y ++G   
Sbjct: 272 CAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGE 331

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF+++    + R+  +   +  ++ AC  L +   GK++H+ I+ N ++ +  +GS
Sbjct: 332 KAILLFRKMK---MRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGS 388

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV  Y KC                               G+   A R+ +   D  ++ 
Sbjct: 389 TLVWFYCKC-------------------------------GEYTYAARILEAMPDRDAIS 417

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W ++ISGY +   + EAL     M  +GV  +  T +S L AC+ L  L++G+++HG   
Sbjct: 418 WTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVN 477

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     +V V S+L+D Y +                               CG++++A+ 
Sbjct: 478 KTQDFSNVFVGSSLIDMYMR-------------------------------CGKVDEARS 506

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +F  MP  +L++W  +I G +QNG   EAL     M +    +D F L++V+++C ++
Sbjct: 507 VFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDL 564



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 183/382 (47%), Gaps = 66/382 (17%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N LIS +A+  E+  AR +F++MP R+ ++W +M++ Y++ G   E VRLF ++   
Sbjct: 83  FVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGS 142

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            V   Q ++     ++ +C +    + G+Q+H  I+  G                     
Sbjct: 143 GV---QGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGW-------------------- 179

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             +N +++          SA+   YA CG +  A  +FD+      + W +MI+ Y+ + 
Sbjct: 180 --SNVIVD----------SAIAHFYAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHG 227

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              +AL +F +M   G   +  T+ SVL AC+    +  GKQ+H    K    +D+ + S
Sbjct: 228 HGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGS 287

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL                               +T+Y+ CG + DA+ +F  MP ++ I+
Sbjct: 288 AL-------------------------------VTMYARCGEVFDAQAVFDMMPRRNTIT 316

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W SMI G +Q+G   +A+ LF  M    + ++  ++  ++SAC ++ S  LG+++ A++ 
Sbjct: 317 WTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQII 376

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
              ++ +  I ++LV FYCKCG
Sbjct: 377 KNSMEENLQIGSTLVWFYCKCG 398



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 34/250 (13%)

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F  + LIS YA   +++DAR VFD   + S V W +M++ Y+      E + LF  M  +
Sbjct: 83  FVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGS 142

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSD 357
           GV  ++ T   +L +C      + G+QVH   C V G   +VIV SA+   Y++      
Sbjct: 143 GVQGNSLTFVCLLKSCGERCDAKLGQQVH--CCIVKGGWSNVIVDSAIAHFYAQ------ 194

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                                    CG +  A  IF  M  + +ISW +MI    Q+G  
Sbjct: 195 -------------------------CGDVASASAIFDKMAYRDVISWTTMITAYVQHGHG 229

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            +AL +F  M     R ++F++ SV+ ACA   ++  G+Q+   V      +D  I ++L
Sbjct: 230 GQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSAL 289

Query: 478 VDFYCKCGFI 487
           V  Y +CG +
Sbjct: 290 VTMYARCGEV 299



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    ++  G+++H  F+ K    S + + + L+ MYMRCG   +A  +FD MP  N
Sbjct: 457 LKACAKLEALQYGRKIH-GFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHN 515

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             +W  +I GF + G  E++L+   +M Q+    +DF   +L +     G+L+     F+
Sbjct: 516 LVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDF---VLSTVLTSCGDLQWKSISFS 572

Query: 128 D 128
           D
Sbjct: 573 D 573


>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 224/450 (49%), Gaps = 69/450 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQSC+   +   GK +H H LK    N  + + N L+ +Y  C N  DA  +FDE P  
Sbjct: 36  LLQSCSLRVAKFDGKLIHCHVLKMS-FNFDVYVQNTLINLYSVCQNLGDARKVFDESPVL 94

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+++                                  A  G++  A  LF++M 
Sbjct: 95  DLVSWNSIL----------------------------------AGKGDVTEAYRLFSEMC 120

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           +++ ++W+++I  Y +NG   EA+  F ++N+     +  D  ++ +V+ ACA L A++ 
Sbjct: 121 KKDLVSWSALISGYEQNGRYEEALVTFGKMNA---YGIMVDEVVVVSVLSACAHLFAVKT 177

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK +HS  +  G++    L ++L+++Y  C + +SA ++ N+    D    +++ISGY  
Sbjct: 178 GKLVHSLAVKIGIESYVNLQNALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISGYLK 237

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG++  A+ +FD   D   V W++MISGY  ++   E L LF +M+ +GV  D +TL SV
Sbjct: 238 CGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSV 297

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +SAC+ L  L+ GK +H +  K G+  +VI+ + L+D Y K G                 
Sbjct: 298 VSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGC---------------- 341

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                          +EDA  +F  M  K + +WN++I+GL+ NG    +LD F  M   
Sbjct: 342 ---------------VEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDC 386

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFA 460
            +  ++ +  +V+ AC ++  +E G   F+
Sbjct: 387 GVVPNEITFVAVLVACRHMGLVEEGRCHFS 416



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 188/349 (53%), Gaps = 6/349 (1%)

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           M+  +V+  +    + ++K +   L E ++ D F    ++ +C+   A   GK IH H+L
Sbjct: 1   MMRAFVQRNYPYYCMDMYKWM---LQENVEPDNFTYPILLQSCSLRVAKFDGKLIHCHVL 57

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
               +FD  + ++L+NLY  C +   A +V +     D    +++++G    G + +A R
Sbjct: 58  KMSFNFDVYVQNTLINLYSVCQNLGDARKVFDESPVLDLVSWNSILAGK---GDVTEAYR 114

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F        V W+++ISGY  N    EAL+ F KM   G++ D   + SVLSAC+ L  
Sbjct: 115 LFSEMCKKDLVSWSALISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFA 174

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           ++ GK VH  A K+G+   V + +AL+  YS       A KLF+     D I  N+MI+ 
Sbjct: 175 VKTGKLVHSLAVKIGIESYVNLQNALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISG 234

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y  CG IE AK +F  M +K L+SW++MI G +Q+    E L LF  M    ++ D+ +L
Sbjct: 235 YLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTL 294

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            SV+SAC ++++L+ G+ +   +   GL  + I+ T+L+D Y K G ++
Sbjct: 295 VSVVSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGCVE 343



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    ++  GK +HL+  K G L   + +   L+ MYM+ G   DAL +F  M
Sbjct: 294 LVSVVSACTHLAALDQGKWIHLYLRKNG-LKINVILGTTLIDMYMKFGCVEDALEVFHGM 352

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             +   +WNA+I G    G    SL  F+ M       N+ ++  ++      G ++  R
Sbjct: 353 KEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVPNEITFVAVLVACRHMGLVEEGR 412

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNG 148
             F+ M + + I  N    C  + G
Sbjct: 413 CHFSSMIQEHKIEPNRQCSCSFQKG 437


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 208/403 (51%), Gaps = 56/403 (13%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  +A+ G  ++++ +F+  P+ ++  W  +I CYV  GF  EAV L+ E+     ++ 
Sbjct: 386 LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQ--DQT 443

Query: 169 QCDAFILATVIGACADLAALEYGKQ---------IHSHILVNGLDFDSV----------- 208
           Q   F+  +V+ AC+    L  G +         + S ++   ++ DSV           
Sbjct: 444 QISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSE 503

Query: 209 LGSSLVNLYGKCGDFNSANQ-VLNMMKEPD-DFCLSALISGYANCGKMNDARRVFDRTTD 266
           LGS  +   G+  +  S +  V+    +P+ DF   AL+  YA+ G + D  +VF+   +
Sbjct: 504 LGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKE 563

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + + WN++IS +  N +  EALLLF +M+  G++ D+ +LAS LSAC ++ F + G Q+
Sbjct: 564 KTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQI 623

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG+  K G  +D  V +AL+D Y+K G    A K+F ++K                    
Sbjct: 624 HGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIK-------------------- 662

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                       KSL++WNSMI G SQNG  +EA+ LF  M    ++MDK +  SVI AC
Sbjct: 663 -----------EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQAC 711

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +++  LE G+ V  ++ + GL  D  + T+L D Y KCG ++M
Sbjct: 712 SHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQM 754



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 182/405 (44%), Gaps = 66/405 (16%)

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G +K G       +   M  + DF    L+  +A  G L+    +F  +  +  ++WN++
Sbjct: 513 GRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTL 572

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  + RNG   EA+ LF ++ +   + L  D++ LA+ + AC  ++  + G QIH +I+ 
Sbjct: 573 ISIFTRNGQPEEALLLFVQMQT---QGLMPDSYSLASSLSACGTISFSQLGAQIHGYII- 628

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
                             K G+FN             DF  +ALI  YA CG ++ A ++
Sbjct: 629 ------------------KTGNFN-------------DFVQNALIDMYAKCGFVHSANKM 657

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F++  + S V WNSMI G+  N    EA+ LF +M  N V  D  T  SV+ ACS LG+L
Sbjct: 658 FEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYL 717

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E GK VH      G+  D  + +AL D YSK                             
Sbjct: 718 EKGKWVHHKLIMYGLRKDSYLDTALTDMYSK----------------------------- 748

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG ++ A  +F  M  +S++SW+ MI G   +G     + LF  M    ++ +  +  
Sbjct: 749 --CGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFM 806

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++SAC++  ++E G+  F  ++  G++        +VD   + G
Sbjct: 807 HILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAG 851



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 45/372 (12%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MD  +D+L   L           G     H + + I   T+   N L+ ++ R G P +A
Sbjct: 530 MDPELDFLGPALMELYAD----TGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEA 585

Query: 61  LLLFDE------MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-NDFSWNMLISGF 113
           LLLF +      MP     + +    G +        +  + +     NDF  N LI  +
Sbjct: 586 LLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMY 645

Query: 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           AK G + +A  +F  +  ++ + WNSMI  + +NG++ EA+ LF ++  + V   + D  
Sbjct: 646 AKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV---KMDKL 702

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
              +VI AC+ L  LE GK +H  +++ GL  DS L ++L ++Y KCG+   A+ V + M
Sbjct: 703 TFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRM 762

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            E      S +I+GY   G++N                                 + LF+
Sbjct: 763 SERSIVSWSVMIAGYGMHGQIN-------------------------------ATISLFN 791

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M  +G+  +  T   +LSACS  G +E GK       + GV       + ++D  S+ G
Sbjct: 792 QMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAG 851

Query: 354 MPSDACKLFSEL 365
             + A ++ + L
Sbjct: 852 DLNGAYQIITSL 863



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 55/318 (17%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H+H+ + GL       + L+  Y + G F S+ +V +   +PD F    LI  Y   G
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 425

Query: 253 KMNDA-----RRVFDRTTDTSSVMWNSMI---SGY------ISNNEDTEALLLFHKMRRN 298
              +A       V+   T  S+ ++ S++   SG+        N + +E L +F +M   
Sbjct: 426 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISE 485

Query: 299 GVLEDASTLASVLSACSSLGFL--------EHGKQVHGHACKVGVIDDV-IVASALLDTY 349
            V  D+ T+ SV  ACS LG L        + G+ VHG   +  +  ++  +  AL++ Y
Sbjct: 486 AVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELY 545

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +  G   D  K+F  +K    +  NT+I++++                            
Sbjct: 546 ADTGNLRDCHKVFETIKEKTILSWNTLISIFT---------------------------- 577

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
              +NG P EAL LF  M    L  D +SLAS +SAC  IS  +LG Q+   +   G  +
Sbjct: 578 ---RNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFN 634

Query: 470 DQIISTSLVDFYCKCGFI 487
           D  +  +L+D Y KCGF+
Sbjct: 635 D-FVQNALIDMYAKCGFV 651



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 26/237 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++Q+C+    +  GK +H   +  G+   +  +   L  MY +CG    A  +FD M  R
Sbjct: 707 VIQACSHLGYLEKGKWVHHKLIMYGLRKDSY-LDTALTDMYSKCGELQMAHGVFDRMSER 765

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW+ MI G+   G    ++ LFN M     + ND ++  ++S  + AG ++  +  F
Sbjct: 766 SIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYF 825

Query: 127 NDM------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           N M      P+ +  A   M+    R G    A ++   L          ++ I   ++ 
Sbjct: 826 NSMSEFGVEPKHDHFA--CMVDLLSRAGDLNGAYQIITSLP------FPANSSIWGALLN 877

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSV---LGSSLVNLYGKCGDFNSANQVLNMMK 234
            C     ++  K I  ++    LD D+      + L N+Y + G ++   +V +MMK
Sbjct: 878 GCRIHKRIDIIKSIEKNL----LDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMK 930


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 229/484 (47%), Gaps = 78/484 (16%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT--DALLLFDEMPRRNCFSWNAMIEGF 82
           KQ+H   L+ G+       A+RL+        P+   A  +FD++P  N ++WN +I  +
Sbjct: 52  KQIHAQMLRTGLFFDPFS-ASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAY 110

Query: 83  MKLGHKEKSLQLFNVM-------PQKNDFSW----------------------------- 106
               +  +SL +F  M       P K  F +                             
Sbjct: 111 ASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSD 170

Query: 107 ----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
               N LI  +AK GEL     +F ++PRR+ ++WNSMI  +V+ G   EA+ LF+E+ +
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMET 230

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
              + ++ +   +  V+ ACA  +  E+G+ +HS+I  N +     L ++++++Y KCG 
Sbjct: 231 ---QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGS 287

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A ++ + M E D    + ++ GYA  G+ + A+ +FD   +     WN++IS Y   
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQC 347

Query: 283 NEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
            +  EAL LFH+++ +   + D  TL S LSAC+ LG ++ G  +H +  K G+  +  +
Sbjct: 348 GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHL 407

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            ++L+D Y K                               CG ++ A  +F ++  K +
Sbjct: 408 TTSLIDMYCK-------------------------------CGDLQKALMVFHSVERKDV 436

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
             W++MI GL+ +G   +A+ LF  M +  ++ +  +  +++ AC+++  +E G   F +
Sbjct: 437 FVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQ 496

Query: 462 VTII 465
           + ++
Sbjct: 497 MELV 500



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 189/390 (48%), Gaps = 42/390 (10%)

Query: 102 NDFSWNMLISGFAKAG--ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           + FS + LI+  A +    L  A+ +F+ +P  N   WN++I  Y  +    +++ +F  
Sbjct: 66  DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLR 125

Query: 160 L---NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216
           +   + D       D F    +I A ++L  L  GK  H      G+    +LGS     
Sbjct: 126 MLHQSPDFP-----DKFTFPFLIKAASELEELFTGKAFH------GMVIKVLLGS----- 169

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
                               D F L++LI  YA CG++    RVF        V WNSMI
Sbjct: 170 --------------------DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMI 209

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           + ++      EAL LF +M    V  +  T+  VLSAC+     E G+ VH +  +  + 
Sbjct: 210 TAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIG 269

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
           + + +++A+LD Y+K G   DA +LF ++   D +   TM+  Y+  G  + A+ IF  M
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM 329

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELG 455
           PN+ + +WN++I    Q G P EAL+LF  +      + D+ +L S +SACA + +++LG
Sbjct: 330 PNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG 389

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             +   +   G+  +  ++TSL+D YCKCG
Sbjct: 390 GWIHVYIKKQGMKLNCHLTTSLIDMYCKCG 419



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 165/358 (46%), Gaps = 66/358 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C        G+ +H  ++++  +  +L ++N +L MY +CG+  DA  LFD+MP +
Sbjct: 243 VLSACAKKSDFEFGRWVH-SYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK 301

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SW  M+ G+ K+G  + +  +F+ MP ++  +WN LIS + + G+ K          
Sbjct: 302 DIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPK---------- 351

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                                EA+ LF EL   L +  + D   L + + ACA L A++ 
Sbjct: 352 ---------------------EALELFHELQ--LSKTAKPDEVTLVSTLSACAQLGAMDL 388

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  IH +I   G+  +  L +SL+++Y KCGD   A  V + ++  D F  SA+I+G A 
Sbjct: 389 GGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAM 448

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G   D                               A+ LF KM+ + V  +A T  ++
Sbjct: 449 HGHGKD-------------------------------AIALFSKMQEDKVKPNAVTFTNI 477

Query: 311 LSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           L ACS +G +E G+        V GV+  V   + ++D   + G+  +A +L  ++ +
Sbjct: 478 LCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPM 535



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 138/313 (44%), Gaps = 64/313 (20%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           ++I  C++   L   KQIH+ +L  GL FD    S L+                      
Sbjct: 40  SLIDQCSETKQL---KQIHAQMLRTGLFFDPFSASRLIT--------------------- 75

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
                +A +S + +   ++ A++VFD+    +   WN++I  Y S++   ++LL+F +M 
Sbjct: 76  -----AAALSPFPS---LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRML 127

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            ++    D  T   ++ A S L  L  GK  HG   KV +  DV +              
Sbjct: 128 HQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFI-------------- 173

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                            LN++I  Y+ CG +     +F  +P + ++SWNSMI    Q G
Sbjct: 174 -----------------LNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG 216

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
            P EAL+LF  M   +++ +  ++  V+SACA  S  E G  V + +    +     +S 
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSN 276

Query: 476 SLVDFYCKCGFIK 488
           +++D Y KCG ++
Sbjct: 277 AMLDMYTKCGSVE 289


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 208/425 (48%), Gaps = 42/425 (9%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNC----FSWNAMIEGFMKLGHKEKSLQLFNVM 98
           + NR L+   R   P   LL+++ M  +      FS+  +++   ++    + L++  + 
Sbjct: 89  LCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLA 148

Query: 99  PQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
            +     + F    L+  +A  G +  AR +F+ M  R+ + W+ MI  Y ++G   +A+
Sbjct: 149 AKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDAL 208

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            LF+E+ +  VE    D  +L+TV+ AC     L YGK IH  I+ N +  D  L S+LV
Sbjct: 209 LLFEEMKNYNVEP---DEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALV 265

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            +Y  CG  + A  +   M   +    +A+++GY+  G++ +AR VF++      V W++
Sbjct: 266 TMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSA 325

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MISGY  ++   EAL LF++M+  G+  D  T+ SV++AC+ LG L+  K +H    K G
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
               + + +AL++ Y+K                               CG +E A+ IF 
Sbjct: 386 FGGALPINNALIEMYAK-------------------------------CGSLERARRIFD 414

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP K++ISW  MI   + +G    AL  F  M   ++  +  +   V+ AC++   +E 
Sbjct: 415 KMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEE 474

Query: 455 GEQVF 459
           G ++F
Sbjct: 475 GRKIF 479



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 186/379 (49%), Gaps = 34/379 (8%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
            ++IS  A +  L  A ++FN +P+      N  +    R+    + + +++ + +   +
Sbjct: 60  KLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRT---Q 116

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            L  D F    ++ A + + +L  G +IH   L   L FDS                   
Sbjct: 117 GLAVDRFSFPPLLKALSRVKSLVEGLEIHG--LAAKLGFDS------------------- 155

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                     D F  + L+  YA CG++ +AR +FD+      V W+ MI GY  +    
Sbjct: 156 ----------DPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFN 205

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +ALLLF +M+   V  D   L++VLSAC   G L +GK +H    +  ++ D  + SAL+
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALV 265

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y+  G    A  LF ++   + +    M+T YS  G+IE+A+ +F  M  K L+ W++
Sbjct: 266 TMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSA 325

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI G +++ SP EAL+LF  M  L ++ D+ ++ SVI+ACA++ +L+  + +   V   G
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385

Query: 467 LDSDQIISTSLVDFYCKCG 485
                 I+ +L++ Y KCG
Sbjct: 386 FGGALPINNALIEMYAKCG 404



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%)

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           L S+L    ++L+  +I+  +    ++ A  +F  +P       N  +  LS++  P + 
Sbjct: 47  LRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKT 106

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L ++  M    L +D+FS   ++ A + + SL  G ++      +G DSD  + T LV  
Sbjct: 107 LLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRM 166

Query: 481 YCKCGFI 487
           Y  CG I
Sbjct: 167 YAACGRI 173


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 194/397 (48%), Gaps = 44/397 (11%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R GN   A  LFDEMP R+  SWN++I G+ K G  ++S +LF +MP KN  SWN +I+G
Sbjct: 59  RAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAG 118

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
             +   +  A   F  MP+RN  +WN+MI   VR     EA RLF+E+          + 
Sbjct: 119 CIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR-------NV 171

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLN 231
                ++   A +  +E  +      L N +   +V+  + +++ Y + G F+ A  +  
Sbjct: 172 ISYTAMVDGYAKIGEIEQARA-----LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFE 226

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M + +   ++A+I+GY   GK + A+ +FD+        WN+MI+GY  N    EAL L
Sbjct: 227 QMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKL 286

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
             +M + G+  D STL SVL+ACSSL  L+ G++ H    K G              Y  
Sbjct: 287 HSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSG--------------YES 332

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
           R                   + N +IT+Y  CG I D++  FR + +  ++SWN+MI   
Sbjct: 333 R-----------------ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAF 375

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +++G    AL  F  M    +  D  +  S++SAC +
Sbjct: 376 ARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH 412



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 168/385 (43%), Gaps = 97/385 (25%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   +R     +A  LF+EMPRRN  S+ AM++G+ K+G  E++  LFN MPQKN  
Sbjct: 144 NAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV 203

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIA---------------------------- 136
           SW ++ISG+ + G+   A  LF  MP +N +A                            
Sbjct: 204 SWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRD 263

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              WN+MI  Y +NG   EA++L  ++   L   +Q D   L +V+ AC+ LA+L+ G++
Sbjct: 264 LASWNAMITGYAQNGSGEEALKLHSQM---LKMGMQPDHSTLISVLTACSSLASLQEGRK 320

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
            H  +L +G +    + ++L+ +Y KCG    +      +  PD                
Sbjct: 321 THVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPD---------------- 364

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                           V WN+MI+ +  +     AL  F +MR N V  D  T  S+LSA
Sbjct: 365 ---------------VVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 409

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKLFSELKVYDTIL 372
           C             GHA KV   + +   ++++++Y     P   AC             
Sbjct: 410 C-------------GHAGKVH--ESLNWFNSMIESYKIVPRPEHFAC------------- 441

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMP 397
              ++ + S  G++E A  I + MP
Sbjct: 442 ---LVDILSRGGQVEKAYKIIQEMP 463



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 151/291 (51%), Gaps = 8/291 (2%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+V  +S++  Y K G F+ + ++  +M   +    +++I+G     ++++A + F    
Sbjct: 77  DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMP 136

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             ++  WN+MISG +  +   EA  LF +M R  V+    +  +++   + +G +E  + 
Sbjct: 137 QRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVI----SYTAMVDGYAKIGEIEQARA 192

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +     +     +V+  + ++  Y + G   +A  LF ++   + + +  MIT Y   G+
Sbjct: 193 LFNCMPQ----KNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGK 248

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            + AK +F  +P + L SWN+MI G +QNGS  EAL L   M K+ ++ D  +L SV++A
Sbjct: 249 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 308

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           C++++SL+ G +    V   G +S   I  +L+  YCKCG I   E    Q
Sbjct: 309 CSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQ 359



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C++  S+  G++ H+  LK G   S + I N L+ MY +CG+  D+ L F ++
Sbjct: 302 LISVLTACSSLASLQEGRKTHVLVLKSG-YESRISICNALITMYCKCGSILDSELAFRQI 360

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SWNAMI  F + G  +++L  F  M     + +  ++  L+S    AG++  + 
Sbjct: 361 DHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESL 420

Query: 124 TLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             FN M       PR    A   ++    R G   +A ++ +E+        + D  I  
Sbjct: 421 NWFNSMIESYKIVPRPEHFA--CLVDILSRGGQVEKAYKIIQEMP------FEADCGIWG 472

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            ++ AC     ++ G ++ +  +V     +S     L N+Y   G +    +V  +M+E
Sbjct: 473 ALLAACHVHLNVKLG-ELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMRE 530



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
           F    +Q H  + K+    DV   +  +   ++ G    A +LF E+   DT+  N++IT
Sbjct: 27  FHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIIT 86

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
            Y   G  +++K +F  MP K+++SWNSMI G  ++    EA   F  M +     +  S
Sbjct: 87  GYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQ----RNTAS 142

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             ++IS       +E   ++F  +       + I  T++VD Y K G I+
Sbjct: 143 WNAMISGLVRYDRVEEASRLFEEMP----RRNVISYTAMVDGYAKIGEIE 188


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 237/476 (49%), Gaps = 12/476 (2%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE---MPRRNCFSWNAMIEGFM 83
           LH H ++ G+   T  +A+ LL  Y       +    F +       + F+++ M+   +
Sbjct: 104 LHAHAVRSGVAADT-SVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHV 162

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           K G    +  LF+ MP++N  S+  ++    K G +  A  L+   P  +   + + I  
Sbjct: 163 KAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISG 222

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG---KQIHSHILV 200
           +VRN     A+ +F+++ S  V   + +      +I AC  + A E+G     + S I  
Sbjct: 223 FVRNELHHNALGVFRKMVSCGV---RPNGITFVCMIKAC--VGAGEFGLAMSIVGSAIKS 277

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           N  +    + +SL+ LY + GD  +A +V + M   D    +AL+  Y+  G ++ ARRV
Sbjct: 278 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRV 337

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
            D   + + V W ++I+ +       EA+ L+ +M  +G   + S  +SVLSAC++L  L
Sbjct: 338 LDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDL 397

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G ++H  + K+G   +V V+S+L+D Y K     DA  +F  L   + +  N++ + Y
Sbjct: 398 RGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGY 457

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           S  G++ +A ++F+ MP ++L SWN++I G +QN   ++AL  F  M        + + +
Sbjct: 458 SYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFS 517

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           SV+ ACAN+ SL  G+   A+   +G++    I T+L D Y K G ++  +    Q
Sbjct: 518 SVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQ 573



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 214/421 (50%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  ++++G    + ++F+ M  K+  SW  L+  ++++G+L  AR + + MP RN +
Sbjct: 288 NSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEV 347

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W ++I  + + G A EAV+L+ ++   L +  + +    ++V+ ACA L  L  G +IH
Sbjct: 348 SWGTLIARHEQRGNAAEAVKLYSQM---LADGCRPNISCFSSVLSACATLEDLRGGARIH 404

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L  G   +  + SSL+++Y KC     A  + + + E +  C ++L SGY+  GKM 
Sbjct: 405 ARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMV 464

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F +    +   WN++ISGY  N +  +AL  F+ M  +G +    T +SVL AC+
Sbjct: 465 EAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACA 524

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +L  L  GK  H    K+G+ + + + +AL D Y+K                        
Sbjct: 525 NLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKS----------------------- 561

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ +K +F  MP ++ ++W +MI GL++NG   E++ L  +M    +  +
Sbjct: 562 --------GDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPN 613

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F ++   G+   +   T +VD   + G +   E  LM
Sbjct: 614 EHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLM 673

Query: 496 Q 496
           +
Sbjct: 674 K 674



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 174/433 (40%), Gaps = 103/433 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H   LK G  ++ + +++ L+ MY +C    DA  +F
Sbjct: 381 ISCFSSVLSACATLEDLRGGARIHARSLKMGS-STNVFVSSSLIDMYCKCKKCRDAQTIF 439

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
           D                                +P+KN   WN L SG++  G++  A  
Sbjct: 440 D-------------------------------TLPEKNIVCWNSLASGYSYNGKMVEAMY 468

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RN  +WN++I  Y +N   R+ V   +  N+ L           ++V+ ACA+
Sbjct: 469 LFKKMPARNLASWNTIISGYAQN---RQFVDALRSFNAMLASGQVPGEITFSSVLLACAN 525

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +L  GK  H+  +  G++    +G++L ++Y K GD                      
Sbjct: 526 LCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGD---------------------- 563

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                    +  ++R+F +  + + V W +MI G   N    E++LL   M   G+  + 
Sbjct: 564 ---------LQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNE 614

Query: 305 STLASVLSACSSLGFLEHG--------------KQVHGHACKVGVI---DDVIVASALL- 346
            T  ++L ACS  G +E                K+ H + C V V+     +I A ALL 
Sbjct: 615 HTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKH-YTCMVDVLARAGRLIEAEALLM 673

Query: 347 ------------------DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                             +TY    +   A K   EL   +T     +  +Y+SCGR +D
Sbjct: 674 KTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKD 733

Query: 389 AKHIFRTMPNKSL 401
           A  I   M   +L
Sbjct: 734 AARIRVLMKGTTL 746


>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
 gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
          Length = 644

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 242/519 (46%), Gaps = 83/519 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C+    +  G+Q+H    +       + + N L+QMY++CG+  DA  +F ++   
Sbjct: 1   LLRQCSRSKDLARGRQIHASIARSSAPQDPV-VGNWLIQMYLKCGSLIDASQVFYQLLET 59

Query: 71  ---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND------------------------ 103
              N  +W A+I  + + G  + +++LF  M  + +                        
Sbjct: 60  SVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGK 119

Query: 104 -----FSWNM-------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                 S N        LI+ + K G L  A  +F  M   N +AWNS++  +V++    
Sbjct: 120 KIHAYLSCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQHDRVE 179

Query: 152 EAVRLFKELNSDLVERLQCDAF----ILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
            A+ L+ E+       LQC          TV+ A + L +L +GK +H  ++  G + D 
Sbjct: 180 AAMELYWEM-------LQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDV 232

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           V+ ++LVN+YGK                               CG + +A  VFDR    
Sbjct: 233 VVQTALVNMYGK-------------------------------CGSVVEAVEVFDRMPRH 261

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             ++W+++IS +++  E  E+L LF KM+  G   +  TL SVLSAC     LE GK +H
Sbjct: 262 DVILWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIH 321

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL-NTMITVYSSCGRI 386
               + G   D+IV +A++  Y K G   DA  +F  +   + + + N +I++Y  CG  
Sbjct: 322 ECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSF 381

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             A+ +F +M  +  ++WN+M+    Q     +++ LF  M +     DK ++ +V++ C
Sbjct: 382 GKARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVC 441

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           A++ +L+ G+ + A +    L ++Q+I  ++++ Y KCG
Sbjct: 442 ASLPALQEGKAICAWLDHTPLSANQMIGNAILNMYAKCG 480



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 217/481 (45%), Gaps = 78/481 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + ++C    ++  GK++H +       NS + + + L+ MY +CG+ ++A L+F  M
Sbjct: 102 LVTIFEACGNPENLEDGKKIHAYL----SCNSDVVLGSSLITMYGKCGSLSEACLMFQSM 157

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF----------------- 104
              N  +WN+++  F++    E +++L+        +P +  F                 
Sbjct: 158 EEWNTVAWNSLMGAFVQHDRVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGK 217

Query: 105 ----------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               L++ + K G +  A  +F+ MPR + I W+++I  +V   
Sbjct: 218 LVHDTLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCA 277

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              E++RLF+++    +E  + +   L +V+ AC    ALE GK IH  ++  G + D +
Sbjct: 278 EYEESLRLFRKMQ---LEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGYEGDLI 334

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTDT 267
           +G+++V++YGKCG    A  V + +   +   + +ALIS Y  CG    AR +FD   + 
Sbjct: 335 VGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFGKARDLFDSMAER 394

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
            +V WN+M+S         +++ LF +M + G   D  T+ +VL+ C+SL  L+ GK + 
Sbjct: 395 DAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAI- 453

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
                           A LD       P  A ++            N ++ +Y+ CG  +
Sbjct: 454 ---------------CAWLDH-----TPLSANQMIG----------NAILNMYAKCGSRD 483

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           +A+ IF  M  +  +SWN++I           A  +F  M       D  +  +++S C+
Sbjct: 484 EARRIFSVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTTILSVCS 543

Query: 448 N 448
           +
Sbjct: 544 H 544



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 175/385 (45%), Gaps = 71/385 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           N LI  + K G L  A  +F  +      N +AW ++I  Y RNG  + A+RLF+++   
Sbjct: 34  NWLIQMYLKCGSLIDASQVFYQLLETSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQ-- 91

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            +E    D   L T+  AC +   LE GK+IH+++  N    D VLGSSL+ +YGK    
Sbjct: 92  -LEGNSPDRITLVTIFEACGNPENLEDGKKIHAYLSCNS---DVVLGSSLITMYGK---- 143

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      CG +++A  +F    + ++V WNS++  ++ ++
Sbjct: 144 ---------------------------CGSLSEACLMFQSMEEWNTVAWNSLMGAFVQHD 176

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
               A+ L+ +M + G L    T  +VL+A SSL  L HGK VH    + G  DDV+V +
Sbjct: 177 RVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQT 236

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL++ Y K                               CG + +A  +F  MP   +I 
Sbjct: 237 ALVNMYGK-------------------------------CGSVVEAVEVFDRMPRHDVIL 265

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W+++I          E+L LF  M     R +  +L SV+SAC    +LE G+ +   V 
Sbjct: 266 WSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVV 325

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
             G + D I+  ++V  Y KCG ++
Sbjct: 326 EAGYEGDLIVGNAIVSMYGKCGSLE 350



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 67/314 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++  GK +H   ++ G     L + N ++ MY +CG+  DA       
Sbjct: 301 LVSVLSACEGPQALETGKGIHECVVEAG-YEGDLIVGNAIVSMYGKCGSLEDA------- 352

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-WNMLISGFAKAGELKTARTLF 126
                  W+                 +F+ +P++N     N LIS + + G    AR LF
Sbjct: 353 -------WD-----------------VFHRVPRRNGVPIGNALISMYGRCGSFGKARDLF 388

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           + M  R+A+ WN+M+    +    R++++LF+++   L E    D   + TV+  CA L 
Sbjct: 389 DSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQM---LQEGTPPDKVTILTVLNVCASLP 445

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL+ GK I + +    L  + ++G++++N+Y K                           
Sbjct: 446 ALQEGKAICAWLDHTPLSANQMIGNAILNMYAK--------------------------- 478

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
               CG  ++ARR+F       +V WN++I  Y S +    A  +F  M+  G   DA T
Sbjct: 479 ----CGSRDEARRIFSVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVT 534

Query: 307 LASVLSACSSLGFL 320
             ++LS CS  G L
Sbjct: 535 FTTILSVCSHGGLL 548



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 27/254 (10%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           +PI N L+ MY RCG+   A  LFD M  R+  +WN M+    +L H   S+QLF  M Q
Sbjct: 365 VPIGNALISMYGRCGSFGKARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQ 424

Query: 101 KNDFSWNMLI-------SGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFARE 152
           +      + I       +      E K      +  P   N +  N++++ Y + G   E
Sbjct: 425 EGTPPDKVTILTVLNVCASLPALQEGKAICAWLDHTPLSANQMIGNAILNMYAKCGSRDE 484

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A R+F  +          DA     +IGA    +   Y  QI   + + G   D+V  ++
Sbjct: 485 ARRIFSVMQGR-------DAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTT 537

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC--------GKMNDARRVFDR- 263
           ++++    G    A +    M+E  D+ + A  +G+  C        G++ +A  V ++ 
Sbjct: 538 ILSVCSHGGLLGEAVKWFRWMRE--DYYVEAE-TGHYGCIVDLLGRLGRVPEAEEVAEKM 594

Query: 264 TTDTSSVMWNSMIS 277
              T  ++W +++S
Sbjct: 595 PAGTDPIVWTTLLS 608


>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
 gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
 gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
          Length = 616

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 222/487 (45%), Gaps = 105/487 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
           +AN L+  Y R    +DA  +FDEMP R+  SW AM+  ++KLGH  + ++LF  M    
Sbjct: 117 VANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSG 176

Query: 100 -QKNDFSWNMLISG----------------------------------FAKAGELKTART 124
            Q N  ++  L+                                    +A+ G++ +A  
Sbjct: 177 VQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASA 236

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ M  R+ I+W +MI  YV++G   +A+R+F E+ S   E  + + F + +V+ ACA+
Sbjct: 237 IFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVS---EGFRPNEFTVCSVLKACAE 293

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
             A+ +GKQ+H  +L      D  +GS+LV +                            
Sbjct: 294 EKAVRFGKQLHCAVLKKMYKNDIHIGSALVTM---------------------------- 325

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
              YA CG++ DA+ VFD     +++ W SMISGY  +    +A+LLF KM+   V  + 
Sbjct: 326 ---YARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNN 382

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  +LSAC SL     GK++H    K  + +++ + S                     
Sbjct: 383 LTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGS--------------------- 421

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                     T++  Y  CG    A  I   MP++  ISW ++I G +  G  +EAL   
Sbjct: 422 ----------TLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSL 471

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +M    ++ + ++ +S + ACA + +L+ G ++   V      S+  + +SL+D Y +C
Sbjct: 472 DDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRC 531

Query: 485 GFIKMDE 491
           G  K+DE
Sbjct: 532 G--KVDE 536



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 218/478 (45%), Gaps = 106/478 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC       +G+Q+H   +K G  N  +  A  +   Y +CG+   A  +FD+M  R
Sbjct: 187 LLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSA--IAHFYAQCGDVASASAIFDKMAYR 244

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS--------------------- 105
           +  SW  MI  +++ GH  ++L++F+ M     + N+F+                     
Sbjct: 245 DVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLH 304

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + L++ +A+ GE+  A+ +F+ MPRRN I W SMI  Y ++G   
Sbjct: 305 CAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGE 364

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF+++    + R+  +   +  ++ AC  L +   GK++H+ I+ N ++ +  +GS
Sbjct: 365 KAILLFRKMK---MRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIGS 421

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV  Y KC                               G+   A R+ +   D  ++ 
Sbjct: 422 TLVWFYCKC-------------------------------GEYTYAARILEAMPDRDAIS 450

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W ++ISGY +   + EAL     M  +GV  +  T +S L AC+ L  L++G+++HG   
Sbjct: 451 WTALISGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVN 510

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     +V V S+L+D Y +                               CG++++A+ 
Sbjct: 511 KTQDFSNVFVGSSLIDMYMR-------------------------------CGKVDEARS 539

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +F  MP  +L++W  +I G +QNG   EAL     M +    +D F L++V+++C ++
Sbjct: 540 VFDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDL 597



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 183/382 (47%), Gaps = 66/382 (17%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N LIS +A+  E+  AR +F++MP R+ ++W +M++ Y++ G   E VRLF ++   
Sbjct: 116 FVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGS 175

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            V   Q ++     ++ +C +    + G+Q+H  I+  G                     
Sbjct: 176 GV---QGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGW-------------------- 212

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             +N +++          SA+   YA CG +  A  +FD+      + W +MI+ Y+ + 
Sbjct: 213 --SNVIVD----------SAIAHFYAQCGDVASASAIFDKMAYRDVISWTTMITAYVQHG 260

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              +AL +F +M   G   +  T+ SVL AC+    +  GKQ+H    K    +D+ + S
Sbjct: 261 HGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGS 320

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL                               +T+Y+ CG + DA+ +F  MP ++ I+
Sbjct: 321 AL-------------------------------VTMYARCGEVFDAQAVFDMMPRRNTIT 349

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W SMI G +Q+G   +A+ LF  M    + ++  ++  ++SAC ++ S  LG+++ A++ 
Sbjct: 350 WTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQII 409

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
              ++ +  I ++LV FYCKCG
Sbjct: 410 KNSMEENLQIGSTLVWFYCKCG 431



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 34/250 (13%)

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F  + LIS YA   +++DAR VFD   + S V W +M++ Y+      E + LF  M  +
Sbjct: 116 FVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGS 175

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSD 357
           GV  ++ T   +L +C      + G+QVH   C V G   +VIV SA+   Y++      
Sbjct: 176 GVQGNSLTFVCLLKSCGERCDAKLGQQVH--CCIVKGGWSNVIVDSAIAHFYAQ------ 227

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                                    CG +  A  IF  M  + +ISW +MI    Q+G  
Sbjct: 228 -------------------------CGDVASASAIFDKMAYRDVISWTTMITAYVQHGHG 262

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            +AL +F  M     R ++F++ SV+ ACA   ++  G+Q+   V      +D  I ++L
Sbjct: 263 GQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKMYKNDIHIGSAL 322

Query: 478 VDFYCKCGFI 487
           V  Y +CG +
Sbjct: 323 VTMYARCGEV 332



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    ++  G+++H  F+ K    S + + + L+ MYMRCG   +A  +FD MP  N
Sbjct: 490 LKACAKLEALQYGRKIH-GFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHN 548

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             +W  +I GF + G  E++L+   +M Q+    +DF   +L +     G+L+     F+
Sbjct: 549 LVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDF---VLSTVLTSCGDLQWKSISFS 605

Query: 128 D 128
           D
Sbjct: 606 D 606


>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
          Length = 674

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 213/449 (47%), Gaps = 42/449 (9%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  + + G    +  LF+ MP ++  SW  L++ +A  G+L +AR +F+DMPRRNA 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+++  Y+R    R A  LF ++ +        +A     +I   A    L   + ++
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAK-------NAVSYGAIISGLAKAEMLHEAELVY 154

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             +     D   V  ++L+  Y + G+   A +V   M   D    SA++ G    G ++
Sbjct: 155 EEMPWQWRD--PVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVS 212

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +ARRVFD   + + V W SMI GY+      + LLLF  MRR GV  + +TL+  L AC+
Sbjct: 213 EARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACA 272

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
                  G Q+H     +G   D+ +  +++  YS+ G   DA + F  ++  D +  N+
Sbjct: 273 VASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNS 332

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ---------------------- 413
           +IT Y     +E+A  +F+ M  K  +SW SM+VG +                       
Sbjct: 333 LITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAW 392

Query: 414 ---------NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
                    NG  + A+  FC M++   + +  + + ++SA A+++ L  G Q  A    
Sbjct: 393 TAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSIN 452

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           +G   D  + TSLV  Y KCG  ++ E Y
Sbjct: 453 MGWVFDSAVHTSLVSMYAKCG--RLAEAY 479



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 219/463 (47%), Gaps = 68/463 (14%)

Query: 59  DALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           +A L+++EMP   R+    NA++ G++++G    +L++F  M  ++  SW+ ++ G  K 
Sbjct: 149 EAELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKH 208

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G +  AR +F+ MP RN ++W SMI  YV+ G  R+ + LF  +     E +Q +   L+
Sbjct: 209 GSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR---EGVQVNTTTLS 265

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
             + ACA  +    G QIH+ I+  G + D  LG S++ +Y + G    A +  + M++ 
Sbjct: 266 VALDACAVASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQK 325

Query: 237 DDFCLSALISGY-------------------------------ANCGKMNDARRVFDRTT 265
           D    ++LI+GY                               AN G M ++  +F++  
Sbjct: 326 DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMP 385

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V W ++IS +I+N +   A+  F +M + G   +    + +LSA +SL  L  G+Q
Sbjct: 386 VKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQ 445

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H ++  +G                                V+D+ +  +++++Y+ CGR
Sbjct: 446 AHAYSINMG-------------------------------WVFDSAVHTSLVSMYAKCGR 474

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           + +A H+F ++ N SLI+ NSMI    Q+G   +AL LF  M     + +  +   +++ 
Sbjct: 475 LAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTG 534

Query: 446 CANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           CA    ++ G   F  +  + G++ +    T +VD   + G +
Sbjct: 535 CARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 36/363 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L +C        G Q+H   +  G     + + + ++ MY R G   DA   FD M
Sbjct: 264 LSVALDACAVASLAREGIQIHNLIISMG-FELDIFLGDSIIIMYSRFGWMVDAKRAFDCM 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            +++  SWN++I G+++    E++  LF +M QK+  SW  ++ GFA  G ++ +  LF 
Sbjct: 323 QQKDIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFE 382

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ +AW ++I  ++ NG    AVR F  ++    E  + +    + ++ A A LA 
Sbjct: 383 QMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQ---EGCKPNTIAFSCLLSALASLAM 439

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q H++ +  G  FDS + +SLV++Y KCG    A  V + +  P    ++++I+ 
Sbjct: 440 LNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITA 499

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           +   G + D                               AL LF KM+  G   +  T 
Sbjct: 500 FVQHGFVED-------------------------------ALKLFTKMQNAGYKPNHVTF 528

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             +L+ C+  GF++ G         V GV  +    + ++D   + G+ ++A ++ + + 
Sbjct: 529 LGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMP 588

Query: 367 VYD 369
             D
Sbjct: 589 QND 591



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 126/274 (45%), Gaps = 29/274 (10%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 297
           L+AL++ Y   G++ DA+ +FD+      + W ++++ Y    +   A L+F  M R   
Sbjct: 41  LNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNA 100

Query: 298 ---NGVL---------------------EDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
              N +L                     ++A +  +++S  +    L   + V+      
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMP-- 158

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
               D + ++AL+  Y + G  + A ++F  + V D I  + M+      G + +A+ +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP ++++SW SMI G  + G   + L LF NM +  ++++  +L+  + ACA  S   
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASLAR 278

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            G Q+   +  +G + D  +  S++  Y + G++
Sbjct: 279 EGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWM 312


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 213/429 (49%), Gaps = 42/429 (9%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIEGFMKLGHKEKSLQL---- 94
           + N  L+   R   P   +L +  +     R + FS+  +++   K+    + ++L    
Sbjct: 78  VFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVA 137

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F +    + F     +  +A  G +  AR +F++M  R+ + WN+MI  Y R G   EA 
Sbjct: 138 FKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAF 197

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           +LF+E+    V     D  IL  ++ AC     + Y + I+  ++ N +  D+ L ++LV
Sbjct: 198 KLFEEMKDSNV---MPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALV 254

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            +Y   G  + A +    M   + F  +A++SGY+ CG+++DA+ +FD+T     V W +
Sbjct: 255 TMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTT 314

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MIS Y+ ++   EAL +F +M  +G+  D  ++ SV+SAC++LG L+  K VH      G
Sbjct: 315 MISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNG 374

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                                     L SEL +      N +I +Y+ CG ++  + +F 
Sbjct: 375 --------------------------LESELSIN-----NALINMYAKCGGLDATRDVFE 403

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP ++++SW+SMI  LS +G   +AL LF  M + ++  ++ +   V+  C++   +E 
Sbjct: 404 KMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEE 463

Query: 455 GEQVFARVT 463
           G+++FA +T
Sbjct: 464 GKKIFASMT 472



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 135/249 (54%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D F  +  +  YA+CG++N AR VFD  +    V WN+MI  Y       EA  LF +M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
            + V+ D   L +++SAC   G + + + ++    +  V  D  + +AL+  Y+  G   
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
            A + F ++ V +  +   M++ YS CGR++DA+ IF     K L+ W +MI    ++  
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
           P EAL +F  M    ++ D  S+ SVISACAN+  L+  + V + + + GL+S+  I+ +
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384

Query: 477 LVDFYCKCG 485
           L++ Y KCG
Sbjct: 385 LINMYAKCG 393



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 184/421 (43%), Gaps = 86/421 (20%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            A++  +   G  + + + F  M  +N F    ++SG++K G L  A+ +F+   +++ +
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLV 310

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W +MI  YV + + +EA+R+F+E+       ++ D   + +VI ACA+L  L+  K +H
Sbjct: 311 CWTTMISAYVESDYPQEALRVFEEM---CCSGIKPDVVSMFSVISACANLGILDKAKWVH 367

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           S I VNGL+ +  + ++L+N+Y K                               CG ++
Sbjct: 368 SCIHVNGLESELSINNALINMYAK-------------------------------CGGLD 396

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
             R VF++    + V W+SMI+    + E ++AL LF +M++  V  +  T   VL  CS
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456

Query: 316 SLGFLEHGKQVHG--------------HACKVGVIDDVIVASALLDTYSKRGMPSD---- 357
             G +E GK++                + C V +     +    L+      + S+    
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516

Query: 358 -----ACKLFSELKV--------------YDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
                AC++  EL++              +D  L+  M  +Y+   R ED ++I R M  
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALV-LMSNIYAREQRWEDVRNIRRVMEE 575

Query: 399 KSLISWNSMIVGLSQNGSPIEAL----------DLFCNMNKLDLRMDKFSLASVISACAN 448
           K++     +   + QNG   E L          +++    KLD  + K  LA  +  C +
Sbjct: 576 KNVFKEKGL-SRIDQNGKSHEFLIGDKRHKQSNEIYA---KLDEVVSKLKLAGYVPDCGS 631

Query: 449 I 449
           +
Sbjct: 632 V 632



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 14/228 (6%)

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           +   S+++N  +     ++E    +L + ++R  G   D  +   +L A S +  L  G 
Sbjct: 72  SPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++HG A K+  + D  V +  +D Y+  G  + A  +F E+   D +  NTMI  Y   G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIV-------GLSQNGSPIEALDLFCNMNKLDLRMDKF 437
            +++A  +F  M + +++  + MI+       G + N     A+  F   N  D+RMD  
Sbjct: 192 LVDEAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYNRAIYEFLIEN--DVRMDTH 248

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            L ++++  A    +++  + F ++++  L     +ST++V  Y KCG
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVRNL----FVSTAMVSGYSKCG 292



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 16/212 (7%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
           L S L I N L+ MY +CG       +F++MPRRN  SW++MI      G    +L LF 
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFA 434

Query: 97  VMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRN 147
            M Q+    N+ ++  ++ G + +G ++  + +F  M     I      +  M+  + R 
Sbjct: 435 RMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRA 494

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
              REA+ + + +       +  +  I  +++ AC     LE GK     IL    D D 
Sbjct: 495 NLLREALEVIESMP------VASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDG 548

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            L   + N+Y +   +     +  +M+E + F
Sbjct: 549 AL-VLMSNIYAREQRWEDVRNIRRVMEEKNVF 579


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 217/436 (49%), Gaps = 45/436 (10%)

Query: 39  STLP---IANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIEGFMKLGHKEKS 91
           S LP   + N LL+   R G P   +L +  +     R +  S+  +++   K+    + 
Sbjct: 74  SPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEG 133

Query: 92  LQL----FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
           ++L    F +    + F    L+  +A  G +  AR +F++M +R+ + WN+MI  Y R 
Sbjct: 134 MELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRF 193

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA +LF+E+    V     D  IL  ++ AC     + Y + I+  ++ N +  D+
Sbjct: 194 GLLDEAFKLFEEMKDSNV---MPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDT 250

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            L ++LV +Y   G  + A +    M   + F  +A++SGY+  G+++DAR +FD+T   
Sbjct: 251 HLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMK 310

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W +MIS Y  ++   EAL +F +M  +G+  D  T+ SV+SAC +LG L+  K VH
Sbjct: 311 DLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVH 370

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +    G+               +  +P D                N +I +Y+ CG ++
Sbjct: 371 RYTHLNGL---------------ESVLPID----------------NALINMYAKCGGLD 399

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  MP ++++SW+SMI   + +G   ++L LF  M + ++  ++ +   V+  C+
Sbjct: 400 AARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCS 459

Query: 448 NISSLELGEQVFARVT 463
           +   +E G+++FA +T
Sbjct: 460 HSGLVEEGKKIFASMT 475



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 131/249 (52%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D F  + L+  YA CG++N AR VFD  +    V WN+MI  Y       EA  LF +M+
Sbjct: 148 DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMK 207

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
            + V+ D   L +++SAC   G + + + ++    +  V  D  + +AL+  Y+  G   
Sbjct: 208 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMD 267

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
            A + F ++ V +  +   M++ YS  GR++DA+ IF     K L+ W +MI   +++  
Sbjct: 268 MAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDH 327

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
           P EAL +F  M    ++ D  ++ SVISAC N+ +L+  + V     + GL+S   I  +
Sbjct: 328 PQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNA 387

Query: 477 LVDFYCKCG 485
           L++ Y KCG
Sbjct: 388 LINMYAKCG 396



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 14/225 (6%)

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
            S+++NS++     + E    +L + ++R  G   D  +   +L A S +  L  G ++H
Sbjct: 78  ESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELH 137

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G A K+  + D  V + L+D Y+  G  + A  +F E+   D +  NTMI  Y   G ++
Sbjct: 138 GFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLD 197

Query: 388 DAKHIFRTMPNKSLISWNSMIV-------GLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +A  +F  M + +++  + MI+       G + N     A+  F   N  D+RMD   L 
Sbjct: 198 EAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYNRAIYDFLIEN--DVRMDTHLLT 254

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++++  A    +++  + F ++++  L     +ST++V  Y K G
Sbjct: 255 ALVTMYAGAGCMDMAMEFFRKMSVRNL----FVSTAMVSGYSKAG 295



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P    I +NS++  LS++G P   +  +  +  +  R D+ S   ++ A + +S+L  G 
Sbjct: 75  PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++      I   SD  + T L+D Y  CG I
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRI 165


>gi|255587181|ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525755|gb|EEF28217.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 513

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 215/454 (47%), Gaps = 25/454 (5%)

Query: 34  KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           KG   +  P    L Q + +  N ++     D        +WN  I   M+ G    +LQ
Sbjct: 25  KGTNRTPYPSKKELTQKFKQSKNESEKTTDSD------IVNWNMAITTHMRNGQCHSALQ 78

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           +FN MP+++  ++N +ISG+   G    AR +F+ MP R+   WN M+  YVRN    +A
Sbjct: 79  VFNTMPRRSTVTYNAMISGYLSNGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKNLTDA 138

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
             LF+ +        + D      ++   A    +   ++I   + V     +S+  + L
Sbjct: 139 RGLFERMP-------RRDVVSWNAMLSGYAQNGFIAEAREIFDEMPVK----NSISWNGL 187

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           +  Y + G    A ++     + D    + L+ G+    ++ DARRVFDR      V WN
Sbjct: 188 LAAYVQNGRIEDARRLFESKMDWDVVSWNCLMGGFVKKKRLVDARRVFDRIPVRDEVSWN 247

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MI+GY  N E  EA  LF +       +D  T  +++S     G ++  + +     + 
Sbjct: 248 TMITGYAQNGELEEARKLFEE----SPTQDVFTWTAMVSGYVQNGMVDEARSIFDKMPE- 302

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
               + +  +A++  Y +      A +LF  +   +    NTMIT Y+  G +  A+++F
Sbjct: 303 ---KNSVSWNAMIAGYVQCKRMDMAKELFEAMPFRNISSWNTMITGYAQSGNVPHARNLF 359

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP +  ISW++MI G  QNG   EA+ L+  M +    +++ S  SV++ACA+I++L+
Sbjct: 360 DRMPQRDSISWSAMIAGYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTACADIAALD 419

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           LG+Q    +  +G  +   +  +L+  YCKCG I
Sbjct: 420 LGKQFHGWLVKVGYQTGCYVGNALLAMYCKCGSI 453



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/383 (31%), Positives = 191/383 (49%), Gaps = 42/383 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y+R  N TDA  LF+ MPRR+  SWNAM+ G+ + G   ++ ++F+ MP KN  
Sbjct: 123 NVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSGYAQNGFIAEAREIFDEMPVKNSI 182

Query: 105 SWNMLIS-------------------------------GFAKAGELKTARTLFNDMPRRN 133
           SWN L++                               GF K   L  AR +F+ +P R+
Sbjct: 183 SWNGLLAAYVQNGRIEDARRLFESKMDWDVVSWNCLMGGFVKKKRLVDARRVFDRIPVRD 242

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            ++WN+MI  Y +NG   EA +LF+E  +        D F    ++        ++  + 
Sbjct: 243 EVSWNTMITGYAQNGELEEARKLFEESPTQ-------DVFTWTAMVSGYVQNGMVDEARS 295

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           I   +     + +SV  ++++  Y +C   + A ++   M   +    + +I+GYA  G 
Sbjct: 296 IFDKMP----EKNSVSWNAMIAGYVQCKRMDMAKELFEAMPFRNISSWNTMITGYAQSGN 351

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           +  AR +FDR     S+ W++MI+GY+ N  + EA+ L+ +M+R+G   + S+  SVL+A
Sbjct: 352 VPHARNLFDRMPQRDSISWSAMIAGYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTA 411

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+ +  L+ GKQ HG   KVG      V +ALL  Y K G   +A   F E+   D I  
Sbjct: 412 CADIAALDLGKQFHGWLVKVGYQTGCYVGNALLAMYCKCGSIDEADDAFHEITDKDLISW 471

Query: 374 NTMITVYSSCGRIEDAKHIFRTM 396
           NTMI  Y+  G  ++A  +F +M
Sbjct: 472 NTMIYGYARHGFGKEALIVFESM 494



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 218/461 (47%), Gaps = 75/461 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  +  +MR G    AL +F+ MPRR+  ++NAMI G++  G  + + ++F+ MP+++ F
Sbjct: 61  NMAITTHMRNGQCHSALQVFNTMPRRSTVTYNAMISGYLSNGRFDLAREMFDKMPERDLF 120

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL---- 160
           +WN+++SG+ +   L  AR LF  MPRR+ ++WN+M+  Y +NGF  EA  +F E+    
Sbjct: 121 TWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSGYAQNGFIAEAREIFDEMPVKN 180

Query: 161 ------------NSDLVE--------RLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
                        +  +E        ++  D      ++G       L   +++   I V
Sbjct: 181 SISWNGLLAAYVQNGRIEDARRLFESKMDWDVVSWNCLMGGFVKKKRLVDARRVFDRIPV 240

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
                D V  ++++  Y + G+   A ++       D F  +A++SGY   G +++AR +
Sbjct: 241 R----DEVSWNTMITGYAQNGELEEARKLFEESPTQDVFTWTAMVSGYVQNGMVDEARSI 296

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD+  + +SV WN+MI+GY+       A  LF  M       + S+  ++++  +  G +
Sbjct: 297 FDKMPEKNSVSWNAMIAGYVQCKRMDMAKELFEAM----PFRNISSWNTMITGYAQSGNV 352

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---------VYDTI 371
            H + +     +     D I  SA++  Y + G   +A  L+ E+K          + ++
Sbjct: 353 PHARNLFDRMPQ----RDSISWSAMIAGYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSV 408

Query: 372 LL------------------------------NTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           L                               N ++ +Y  CG I++A   F  + +K L
Sbjct: 409 LTACADIAALDLGKQFHGWLVKVGYQTGCYVGNALLAMYCKCGSIDEADDAFHEITDKDL 468

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           ISWN+MI G +++G   EAL +F +M  + ++ D+ ++ +V
Sbjct: 469 ISWNTMIYGYARHGFGKEALIVFESMKTVGVKPDEATMVTV 509



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++ +GKQ H   +K G       + N LL MY +CG+  +A   F E+  +
Sbjct: 408 VLTACADIAALDLGKQFHGWLVKVGYQTGCY-VGNALLAMYCKCGSIDEADDAFHEITDK 466

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           +  SWN MI G+ + G  +++L +F  M
Sbjct: 467 DLISWNTMIYGYARHGFGKEALIVFESM 494


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 208/466 (44%), Gaps = 82/466 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  +  Y R G    A  +FDEMP +   SWN+M+ G+ +     ++  LF+ MP++N  
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD- 163
           SWN LISG+ K   +  AR  F+ MP RN ++W +M+  YV+ G   EA  LF ++    
Sbjct: 80  SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKN 139

Query: 164 ----------LVERLQCDAFILATVIGACADLAAL--------EYGKQIHSHILVNGLDF 205
                     L++  + D       I    D+ A         + G+   +  L + +  
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPR 199

Query: 206 DSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA------- 257
            +V+  +++++ Y + G  + A ++  +M E ++   +A++ GY   G++ +A       
Sbjct: 200 RNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAM 259

Query: 258 ------------------------RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                                   R+VFD+  +     W++MI  Y     + EAL LF 
Sbjct: 260 PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFA 319

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            M+R GV  +  +L SVLS C+SL  L+HG+QVH    K     DV VAS L        
Sbjct: 320 LMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVL-------- 371

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                  IT+Y  CG +  A+ IF     K ++ WNS+I G +Q
Sbjct: 372 -----------------------ITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQ 408

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +G   EAL +F  M    +  D  +   V+SAC+    ++ G ++F
Sbjct: 409 HGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIF 454



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 193/424 (45%), Gaps = 55/424 (12%)

Query: 67  MP-RRNCFS----WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
           MP RR C S    +N+ I  + ++G  E + ++F+ MP K   SWN +++G+ +    + 
Sbjct: 6   MPCRRYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPRE 65

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           AR LF+ MP RN ++WN +I  YV+N    EA + F  +    V  +   A +   V   
Sbjct: 66  ARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNV--VSWTAMVRGYVQEG 123

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
               A   + +    ++    + +  +LG  +     +    + A  + ++M   D    
Sbjct: 124 LVSEAETLFWQMPEKNV----VSWTVMLGGLI-----QVRRIDEARGLFDIMPVKDVVAR 174

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + +ISGY   G++ +AR +FD     + + W +MISGY+ N +   A  LF  M      
Sbjct: 175 TNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK--- 231

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
                                               + +  +A+L  Y++ G   +A +L
Sbjct: 232 ------------------------------------NEVSWTAMLMGYTQGGRIEEASEL 255

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F  + V   +  N MI  +   G +  A+ +F  +  K   +W++MI    + G  +EAL
Sbjct: 256 FDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEAL 315

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M +  ++ +  SL SV+S CA+++SL+ G QV A +     DSD  +++ L+  Y
Sbjct: 316 NLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMY 375

Query: 482 CKCG 485
            KCG
Sbjct: 376 VKCG 379



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 91/184 (49%), Gaps = 16/184 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C +  S+  G+Q+H   +K    +S + +A+ L+ MY++CG+   A  +FD  
Sbjct: 333 LISVLSVCASLASLDHGRQVHAELVKSQ-FDSDVFVASVLITMYVKCGDLVKARQIFDRF 391

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN++I G+ + G  E++LQ+F+ M       +  ++  ++S  +  G++K   
Sbjct: 392 SPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGL 451

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F  M  +  +      +  M+    R G   +A+ L +++       ++ DA I   +
Sbjct: 452 EIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMP------VEADAIIWGAL 505

Query: 179 IGAC 182
           +GAC
Sbjct: 506 LGAC 509


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 151/576 (26%), Positives = 254/576 (44%), Gaps = 144/576 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            H  +++H   +  G  NS L + N L+ +Y + G    A  +FD + +R+  SW AM+ 
Sbjct: 186 FHCVEKIHARTITHGYENS-LFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLS 244

Query: 81  GFMKLGHKEKSLQLF------NVMPQKNDFS----------------------------- 105
           G  + G +E+++ LF       V P    FS                             
Sbjct: 245 GLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSL 304

Query: 106 ----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                N L++ +++ G    A  +FN M +R+ +++NS+I    + G++ +A+ LFK++ 
Sbjct: 305 ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMC 364

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL----- 216
            D    L+ D   +A+++ AC+ + AL  GKQ HS+ +  G+  D +L  +L++L     
Sbjct: 365 LDC---LKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS 421

Query: 217 --------------------------YGKCGDFNSANQVLNMMK----EPDDFCL----- 241
                                     YG   + N + ++   M+    EP+ F       
Sbjct: 422 DIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILR 481

Query: 242 ------------------------------SALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                         S LI  YA  GK++ A ++F R  +   V 
Sbjct: 482 TCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVS 541

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MI+GY  + +  EAL LF +M+  G+  D    AS +SAC+ +  L  G+Q+H  AC
Sbjct: 542 WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQAC 601

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G  DD+ V +AL                               +++Y+ CG++ DA  
Sbjct: 602 VSGYSDDLSVGNAL-------------------------------VSLYARCGKVRDAYF 630

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F  + +K  ISWNS+I G +Q+G   EAL LF  M+K    ++ F+    +SA AN+++
Sbjct: 631 AFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVAN 690

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++LG+Q+ A +   G DS+  +S  L+  Y KCG I
Sbjct: 691 VKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNI 726



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 223/515 (43%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C +      G +LH   LK G     + +  RL+ +Y+  G+   A+ +FDEMP R
Sbjct: 74  LLDGCLSSGWFSDGWKLHGKILKMGFCAEVV-LCERLMDLYIAFGDLDGAVTVFDEMPVR 132

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KND------------------------ 103
               WN ++  F+      + L LF  M Q   K D                        
Sbjct: 133 PLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKI 192

Query: 104 -------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                        F  N LI  + K G L +A+ +F+ + +R++++W +M+    ++G  
Sbjct: 193 HARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCE 252

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EAV LF ++++  V       +I ++V+ AC  +   + G+Q+H  +L  G   ++ + 
Sbjct: 253 EEAVLLFCQMHTSGVYP---TPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVC 309

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV LY + G+F  A                                +VF+       V
Sbjct: 310 NALVTLYSRLGNFIPA-------------------------------EQVFNAMLQRDEV 338

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            +NS+ISG        +AL LF KM  + +  D  T+AS+LSACSS+G L  GKQ H +A
Sbjct: 339 SYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYA 398

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  D+I+  ALLD Y K                               C  I+ A 
Sbjct: 399 IKAGMSSDIILEGALLDLYVK-------------------------------CSDIKTAH 427

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
             F +   ++++ WN M+V      +  E+  +F  M    +  ++F+  S++  C+++ 
Sbjct: 428 EFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLR 487

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +++LGEQ+  +V   G   +  +S+ L+D Y K G
Sbjct: 488 AVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLG 522



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 217/491 (44%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C++  ++ VGKQ H + +K G ++S + +   LL +Y++C +   A   F   
Sbjct: 375 VASLLSACSSVGALLVGKQFHSYAIKAG-MSSDIILEGALLDLYVKCSDIKTAHEFFLST 433

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW----------------- 106
              N   WN M+  +  L +  +S ++F  M     + N F++                 
Sbjct: 434 ETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGE 493

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             ++LI  +AK G+L  A  +F  +  ++ ++W +MI  Y ++ 
Sbjct: 494 QIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHE 553

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LFKE+     + +  D    A+ I ACA + AL  G+QIH+   V+G   D  
Sbjct: 554 KFAEALNLFKEMQD---QGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLS 610

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV+LY                               A CGK+ DA   FD+     
Sbjct: 611 VGNALVSLY-------------------------------ARCGKVRDAYFAFDKIFSKD 639

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ WNS+ISG+  +    EAL LF +M + G   ++ T    +SA +++  ++ GKQ+H 
Sbjct: 640 NISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHA 699

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V++ L+  Y+K G   DA + F E+   + I  N M+T          
Sbjct: 700 MIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLT---------- 749

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                G SQ+G   +AL LF +M +L +  +  +   V+SAC++
Sbjct: 750 ---------------------GYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSH 788

Query: 449 ISSLELGEQVF 459
           +  ++ G + F
Sbjct: 789 VGLVDEGIKYF 799



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 180/380 (47%), Gaps = 67/380 (17%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G+L  A T+F++MP R    WN ++H +V    A   + LF+ +   L E+++ D    A
Sbjct: 117 GDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRM---LQEKVKPDERTYA 173

Query: 177 TVIGACADL-AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            V+  C          ++IH+  + +G +    + + L++LY K G  NS          
Sbjct: 174 GVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNS---------- 223

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                                A++VFD      SV W +M+SG   +  + EA+LLF +M
Sbjct: 224 ---------------------AKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM 262

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
             +GV       +SVLSAC+ + F + G+Q+HG   K G           L+TY      
Sbjct: 263 HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFS---------LETY------ 307

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                           + N ++T+YS  G    A+ +F  M  +  +S+NS+I GLSQ G
Sbjct: 308 ----------------VCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQG 351

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +AL+LF  M    L+ D  ++AS++SAC+++ +L +G+Q  +     G+ SD I+  
Sbjct: 352 YSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEG 411

Query: 476 SLVDFYCKCGFIKM-DEYYL 494
           +L+D Y KC  IK   E++L
Sbjct: 412 ALLDLYVKCSDIKTAHEFFL 431



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 191/415 (46%), Gaps = 88/415 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C++  ++ +G+Q+H   LK G     + +++ L+ MY + G    AL +F  +  +
Sbjct: 479 ILRTCSSLRAVDLGEQIHTQVLKTG-FQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK 537

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           +  SW AMI G+ +     ++L LF  M  +                             
Sbjct: 538 DVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIH 597

Query: 102 ---------NDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                    +D S  N L+S +A+ G+++ A   F+ +  ++ I+WNS+I  + ++G   
Sbjct: 598 AQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCE 657

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF +++    E    ++F     + A A++A ++ GKQIH+ I+  G D ++ + +
Sbjct: 658 EALSLFSQMSKAGQE---INSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSN 714

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
            L+ LY K                               CG ++DA R F    + + + 
Sbjct: 715 VLITLYAK-------------------------------CGNIDDAERQFFEMPEKNEIS 743

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-------K 324
           WN+M++GY  +    +AL LF  M++ GVL +  T   VLSACS +G ++ G       +
Sbjct: 744 WNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMR 803

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMIT 378
           +VH      G++      + ++D   + G+ S A +   E+ +  D ++  T+++
Sbjct: 804 EVH------GLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLS 852



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 17/222 (7%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +GKQ+H   +K G  +S   ++N L+ +Y +CGN  DA   F EMP +N  SWNAM+ G+
Sbjct: 693 LGKQIHAMIIKTG-HDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGY 751

Query: 83  MKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-- 136
            + GH  K+L LF  M Q     N  ++  ++S  +  G +      F  M   + +   
Sbjct: 752 SQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPK 811

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              +  ++    R+G    A R  +E+       +Q DA +  T++ AC     ++ G+ 
Sbjct: 812 PEHYACVVDLLGRSGLLSRARRFVEEMP------IQPDAMVCRTLLSACIVHKNIDIGEF 865

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             SH+L      DS     L N+Y   G +   ++   MMK+
Sbjct: 866 AASHLLELEPK-DSATYVLLSNMYAVTGKWGCRDRTRQMMKD 906



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 33/217 (15%)

Query: 273 NSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           N+ +S   SN+E +   +   H M   GV  ++ T   +L  C S G+   G ++HG   
Sbjct: 36  NTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K+G   +V++   L+D                               +Y + G ++ A  
Sbjct: 96  KMGFCAEVVLCERLMD-------------------------------LYIAFGDLDGAVT 124

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS- 450
           +F  MP + L  WN ++            L LF  M +  ++ D+ + A V+  C     
Sbjct: 125 VFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDV 184

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                E++ AR    G ++   +   L+D Y K GF+
Sbjct: 185 PFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFL 221


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 145/527 (27%), Positives = 237/527 (44%), Gaps = 124/527 (23%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------- 101
           R G+   A  L   MP RN  SWN +I    +     ++L+++  M Q+           
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLAS 147

Query: 102 ----------------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
                                       N F  N L+  + K G +  A  LF+ M   N
Sbjct: 148 VLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPN 207

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY--- 190
            +++ +M+    ++G   +A+RLF  ++   +   + D   +++V+GACA   A +Y   
Sbjct: 208 EVSFTAMMGGLAQSGAVDDALRLFARMSRSAI---RVDPVAVSSVLGACAQACAGDYNVA 264

Query: 191 -----GKQIHSHILVNGLDFDSVLGSSLVNLY---------------------------- 217
                 + IH+ ++  G D D  +G+SL+++Y                            
Sbjct: 265 RAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILV 324

Query: 218 ---GKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMND---ARRVFDRTTDT 267
              G+ G +  A +VL++M+E    P++   S ++   A+C K  D   AR +FD+ +  
Sbjct: 325 TGYGQLGCYERALEVLDLMQESGFEPNEVTYSNML---ASCIKARDVPSARAMFDKISKP 381

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S   WN+++SGY       + + LF +M+   V  D +TLA +LS CS LG LE GKQVH
Sbjct: 382 SVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVH 441

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             + K+ + +D+ VAS L+D YSK                               CG++ 
Sbjct: 442 SASVKLLLHNDMFVASGLIDMYSK-------------------------------CGQVG 470

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ IF  M  + ++ WNSMI GL+ +    EA D F  M +  +   + S AS+I++CA
Sbjct: 471 IAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCA 530

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            +SS+  G Q+ A+V   G D +  + +SL+D Y KCG   MD+  L
Sbjct: 531 RLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCG--NMDDARL 575



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 216/444 (48%), Gaps = 74/444 (16%)

Query: 13  QSC----NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           Q+C    N   +I + + +H   ++KG  +S   + N L+ MY +     +A+ +F+ M 
Sbjct: 255 QACAGDYNVARAIRLAQSIHALVVRKG-FDSDQHVGNSLIDMYAKGMKMDEAMKVFESMS 313

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
             +  SWN ++ G+ +LG  E++L++ ++M +     N+ +++ +++   KA ++ +AR 
Sbjct: 314 SVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARA 373

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ + + +   WN+++  Y +    ++ + LF+ +     + +Q D   LA ++  C+ 
Sbjct: 374 MFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQH---QNVQPDRTTLAVILSTCSR 430

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L  LE GKQ+HS                                 + ++   D F  S L
Sbjct: 431 LGILELGKQVHS-------------------------------ASVKLLLHNDMFVASGL 459

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           I  Y+ CG++  A+ +F+  T+   V WNSMISG   ++ + EA   F +MR NG+    
Sbjct: 460 IDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTE 519

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S+ AS++++C+ L  +  G+Q+H    K G   +V V S+L+D Y+K             
Sbjct: 520 SSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAK------------- 566

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             CG ++DA+  F  M  K++++WN MI G +QNG   +A++LF
Sbjct: 567 ------------------CGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELF 608

Query: 425 CNMNKLDLRMDKFSLASVISACAN 448
             M     + D  +  +V++ C++
Sbjct: 609 EYMLTTKQKPDSVTFIAVLTGCSH 632



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 215/464 (46%), Gaps = 77/464 (16%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  N ++E +   G    +L+ F  +P+ N +S+N  IS   +AG+L  AR L   MP
Sbjct: 44  DTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMP 103

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            RNA++WN++I    R+    EA+ +++ +   L E L    F LA+V+ AC  +AAL+ 
Sbjct: 104 DRNAVSWNTVIAAVARSDSPGEALEMYRGM---LQEGLAPTNFTLASVLSACGAVAALDD 160

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++ H   +  GLD +  + + L+ +Y KCG    A ++ + M  P++   +A++ G A 
Sbjct: 161 GRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQ 220

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G ++DA R                               LF +M R+ +  D   ++SV
Sbjct: 221 SGAVDDALR-------------------------------LFARMSRSAIRVDPVAVSSV 249

Query: 311 LSACSSLGFLEH--------GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           L AC+     ++         + +H    + G   D  V ++L+D Y+K     +A K+F
Sbjct: 250 LGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVF 309

Query: 363 SELKVYDTILLNTMITVY--------------------------------SSCGRIED-- 388
             +     +  N ++T Y                                +SC +  D  
Sbjct: 310 ESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVP 369

Query: 389 -AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  +   S+ +WN+++ G  Q     + ++LF  M   +++ D+ +LA ++S C+
Sbjct: 370 SARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCS 429

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            +  LELG+QV +    + L +D  +++ L+D Y KCG + + +
Sbjct: 430 RLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQ 473



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 154/302 (50%), Gaps = 41/302 (13%)

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           +L  GL  D+ L + LV LY   G    A +    +  P+ +  +A IS     G +  A
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R +  R  D ++V WN++I+    ++   EAL ++  M + G+     TLASVLSAC ++
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L+ G++ HG A KVG+  +  V + LL  Y+K G  +DA +LF               
Sbjct: 156 AALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFD-------------- 201

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                          + + PN+  +S+ +M+ GL+Q+G+  +AL LF  M++  +R+D  
Sbjct: 202 ---------------WMSSPNE--VSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPV 244

Query: 438 SLASVISACA-------NIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +++SV+ ACA       N++ ++ L + + A V   G DSDQ +  SL+D Y K   +KM
Sbjct: 245 AVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKG--MKM 302

Query: 490 DE 491
           DE
Sbjct: 303 DE 304



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 162/384 (42%), Gaps = 81/384 (21%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK------------ 101
           A  +FD++ + +  +WN ++ G+ +    + +++LF      NV P +            
Sbjct: 371 ARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSR 430

Query: 102 --------------------ND-FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                               ND F  + LI  ++K G++  A+ +FN M  R+ + WNSM
Sbjct: 431 LGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSM 490

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I     +    EA   FK++  + +   +      A++I +CA L+++  G+QIH+ +L 
Sbjct: 491 ISGLAIHSLNEEAFDFFKQMRENGMFPTESS---YASMINSCARLSSIPQGRQIHAQVLK 547

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G D +  +GSSL+++Y KCG+ +                               DAR  
Sbjct: 548 DGYDQNVYVGSSLIDMYAKCGNMD-------------------------------DARLF 576

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F+     + V WN MI GY  N    +A+ LF  M       D+ T  +VL+ CS  G +
Sbjct: 577 FNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLV 636

Query: 321 EHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK------VYDTILL 373
           +      +      G+   V   + L+D   + G  ++   +  ++       +++ +L 
Sbjct: 637 DEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLA 696

Query: 374 NTMITVYSSCGRIEDAKHIFRTMP 397
             ++   +  G    AKH+FR  P
Sbjct: 697 ACVVHHNAELGEFA-AKHLFRLDP 719



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 23/237 (9%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A ++ SC    SI  G+Q+H   LK G  +  + + + L+ MY +CGN  DA L F+ M 
Sbjct: 523 ASMINSCARLSSIPQGRQIHAQVLKDG-YDQNVYVGSSLIDMYAKCGNMDDARLFFNCMI 581

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND-FSWNMLISGFAKAGELKTART 124
            +N  +WN MI G+ + G  EK+++LF  M    QK D  ++  +++G + +G +  A  
Sbjct: 582 VKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIA 641

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            FN M     I      +  +I    R G   E V +  ++        + DA +   ++
Sbjct: 642 YFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMP------YKDDAILWEVLL 695

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMM 233
            AC      E G+    H+       D    S  V   N+Y   G    A+ V  +M
Sbjct: 696 AACVVHHNAELGEFAAKHL----FRLDPKNPSPYVLLSNIYATLGRHGDASAVRALM 748


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 151/519 (29%), Positives = 230/519 (44%), Gaps = 109/519 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL+SC     + +G Q+H   +K G L + +   + L+ MY +C +  DAL  F  M
Sbjct: 154 LAVLLKSCGGLDDLALGVQIHALAVKTG-LETDVRAGSALVDMYGKCRSLDDALRFFHGM 212

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             RN  SW A I G ++     + ++LF  M +                           
Sbjct: 213 GERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTAR 272

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN FS + ++       +AKAG L  AR  F  +P  N    N+M+   VR G
Sbjct: 273 QLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTG 332

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF+ +    V     D   L+ V  ACA++     G Q+H   + +G D D  
Sbjct: 333 LGAEAMQLFQFMTRSGV---GFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVC 389

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +++++LYGKC                      AL+  Y           VF       
Sbjct: 390 VRNAILDLYGKC---------------------KALVEAYL----------VFQEMEQRD 418

Query: 269 SVMWNSMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           SV WN++I+    N   EDT A L  ++M R+G+  D  T  SVL AC+ L  LE+G  V
Sbjct: 419 SVSWNAIIAALEQNECYEDTIAHL--NEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVV 476

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG A K G+  D  V+S ++D Y K                               CG I
Sbjct: 477 HGKAIKSGLGLDAFVSSTVVDMYCK-------------------------------CGAI 505

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            +A+ +   +  + L+SWNS+I G S      EA   F  M  + ++ D F+ A+V+  C
Sbjct: 506 TEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTC 565

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AN++++ELG+Q+  ++    +  D+ IS++LVD Y KCG
Sbjct: 566 ANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCG 604



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 231/552 (41%), Gaps = 138/552 (25%)

Query: 8   LARLLQSCNT--HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
            + L Q C +    ++  G+  H   L  G + +T  ++N LLQMY RCG    A  +FD
Sbjct: 20  FSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTF-VSNCLLQMYARCGGTAHAHGVFD 78

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
                                           MP ++  SWN +++ +  AG+  TA +L
Sbjct: 79  -------------------------------TMPHRDTVSWNTMLTAYVHAGDTDTAASL 107

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  MP  + ++WN++I  Y ++G  R +V L  E++   V     D   LA ++ +C  L
Sbjct: 108 FGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVA---LDRTTLAVLLKSCGGL 164

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             L  G QIH+  +  GL+ D   GS+LV++YGK                          
Sbjct: 165 DDLALGVQIHALAVKTGLETDVRAGSALVDMYGK-------------------------- 198

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
                C  ++DA R F    + +SV W + I+G + N + T  + LF +M+R G+     
Sbjct: 199 -----CRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQP 253

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-------------- 351
             AS   +C+++  L   +Q+H HA K     D +V +A++D Y+K              
Sbjct: 254 AYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGL 313

Query: 352 -----------------RGMPSDACKLF----------------------SELKVY---- 368
                             G+ ++A +LF                      +E+K Y    
Sbjct: 314 PHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGL 373

Query: 369 -------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                        D  + N ++ +Y  C  + +A  +F+ M  +  +SWN++I  L QN 
Sbjct: 374 QVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNE 433

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              + +     M +  +  D F+  SV+ ACA + SLE G  V  +    GL  D  +S+
Sbjct: 434 CYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSS 493

Query: 476 SLVDFYCKCGFI 487
           ++VD YCKCG I
Sbjct: 494 TVVDMYCKCGAI 505



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 180/413 (43%), Gaps = 76/413 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +  +C        G Q+H   +K G  +  + + N +L +Y +C    +A L+F EM
Sbjct: 356 LSGVFSACAEVKGYFQGLQVHCLAVKSG-FDVDVCVRNAILDLYGKCKALVEAYLVFQEM 414

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISG----------- 112
            +R+  SWNA+I    +    E ++   N M     + +DF++  ++             
Sbjct: 415 EQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGL 474

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K G +  A+ L + +  +  ++WNS+I  +    
Sbjct: 475 VVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTK 534

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + EA R F E+   L   ++ D F  ATV+  CA+LA +E GKQIH  I+   +  D  
Sbjct: 535 QSEEAQRFFSEM---LDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEY 591

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S+LV++Y                               A CG M D+  +F++     
Sbjct: 592 ISSTLVDMY-------------------------------AKCGNMPDSLLMFEKARKLD 620

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VH 327
            V WN+MI GY  + +  EAL +F +M+R  V+ + +T  +VL ACS +G L+ G Q  H
Sbjct: 621 FVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFH 680

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITV 379
               +  ++  +   + ++D   +   P +A +    + +  D ++  T++++
Sbjct: 681 LMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSI 733



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 2/182 (1%)

Query: 305 STLASVLSACSSLG--FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +T + +   C+S G   L  G+  H      G +    V++ LL  Y++ G  + A  +F
Sbjct: 18  ATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVF 77

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   DT+  NTM+T Y   G  + A  +F TMP+  ++SWN++I G  Q+G    ++ 
Sbjct: 78  DTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVG 137

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L   M++  + +D+ +LA ++ +C  +  L LG Q+ A     GL++D    ++LVD Y 
Sbjct: 138 LSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYG 197

Query: 483 KC 484
           KC
Sbjct: 198 KC 199


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 187/378 (49%), Gaps = 66/378 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK      AR +F+ MP R+ +AWN+++  Y RNG A  AV +   +  +  ER   DA
Sbjct: 270 YAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERP--DA 327

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
             L +V+ ACAD  AL   +++H+  +  G D    + ++++++Y KC            
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKC------------ 375

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                              G ++ AR+VFD   D +SV WN+MI GY  N + TEAL LF
Sbjct: 376 -------------------GAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALF 416

Query: 293 HKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
            +M   GV + D S LA+ L AC  LGFL+ G++VH    ++G+  +V V          
Sbjct: 417 KRMVGEGVDVTDVSVLAA-LHACGELGFLDEGRRVHELLVRIGLESNVNV---------- 465

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                +N +IT+Y  C R + A  +F  +  K+ +SWN+MI+G 
Sbjct: 466 ---------------------MNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGC 504

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +QNGS  +A+ LF  M   +++ D F+L S+I A A+IS       +      + LD D 
Sbjct: 505 TQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDV 564

Query: 472 IISTSLVDFYCKCGFIKM 489
            + T+L+D Y KCG + +
Sbjct: 565 YVLTALIDMYAKCGRVSI 582



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 211/465 (45%), Gaps = 83/465 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C     +  G+ +H     +G+    L  A  L  MY +C  P DA  +FD MP R
Sbjct: 231 LLKLCAARADLATGRAVHAQLAARGLSPEAL-AATALANMYAKCRRPGDARRVFDRMPAR 289

Query: 71  NCFSWNAMIEGFMK-----------------LGHKEKSLQLFNVMPQ------------- 100
           +  +WNA++ G+ +                  G +  ++ L +V+P              
Sbjct: 290 DRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREV 349

Query: 101 -----KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                +  F   + +S      + K G + +AR +F+ M  RN+++WN+MI  Y  NG A
Sbjct: 350 HAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDA 409

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LFK +  + V+    D  +LA  + AC +L  L+ G+++H  ++  GL+      
Sbjct: 410 TEALALFKRMVGEGVD--VTDVSVLAA-LHACGELGFLDEGRRVHELLVRIGLE------ 460

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
            S VN+                        ++ALI+ Y  C + + A +VFD     + V
Sbjct: 461 -SNVNV------------------------MNALITMYCKCKRTDLAAQVFDELGYKTRV 495

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN+MI G   N    +A+ LF +M+   V  D+ TL S++ A + +      + +HG++
Sbjct: 496 SWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYS 555

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            ++ +  DV V +AL+D Y+K G  S A  LF+  +    I  N MI  Y S G  + A 
Sbjct: 556 IRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAV 615

Query: 391 HIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            +F  M      PN++  ++ S++   S  G   E  + F +M +
Sbjct: 616 ELFEEMKSSGKVPNET--TFLSVLSACSHAGLVDEGQEYFSSMKE 658



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 160/357 (44%), Gaps = 74/357 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++   +++H  F  +G  +  + ++  +L +Y +CG    A  +FD M
Sbjct: 330 LVSVLPACADAQALGACREVHA-FAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGM 388

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
             RN  SWNAMI+G+ + G   ++L LF  M                             
Sbjct: 389 QDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGR 448

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      + N    N LI+ + K      A  +F+++  +  ++WN+MI    +NG
Sbjct: 449 RVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNG 508

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +AVRLF  +    +E ++ D+F L ++I A AD++     + IH + +   LD D  
Sbjct: 509 SSEDAVRLFSRMQ---LENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVY 565

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+++Y KCG  + A  + N  ++      +A+I GY + G                
Sbjct: 566 VLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHG---------------- 609

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
                   SG +       A+ LF +M+ +G + + +T  SVLSACS  G ++ G++
Sbjct: 610 --------SGKV-------AVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQE 651



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 126/303 (41%), Gaps = 61/303 (20%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA  A L  G+ +H+ +   GL  +++  ++L N+Y KC     A +V + M   D    
Sbjct: 235 CAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAW 294

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +AL++GYA  G    A  +  R  +                               +G  
Sbjct: 295 NALVAGYARNGLAEAAVGMVVRMQE------------------------------EDGER 324

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            DA TL SVL AC+    L   ++VH  A + G  + V V++A+LD Y K G    A K+
Sbjct: 325 PDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKV 384

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F  ++  +++  N MI                                G ++NG   EAL
Sbjct: 385 FDGMQDRNSVSWNAMIK-------------------------------GYAENGDATEAL 413

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
            LF  M    + +   S+ + + AC  +  L+ G +V   +  IGL+S+  +  +L+  Y
Sbjct: 414 ALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMY 473

Query: 482 CKC 484
           CKC
Sbjct: 474 CKC 476



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 32/183 (17%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  S+L  C++   L  G+ VH      G+  + + A+AL + Y+K              
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAK-------------- 272

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                            C R  DA+ +F  MP +  ++WN+++ G ++NG    A+ +  
Sbjct: 273 -----------------CRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315

Query: 426 NMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            M + D  R D  +L SV+ ACA+  +L    +V A     G D    +ST+++D YCKC
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKC 375

Query: 485 GFI 487
           G +
Sbjct: 376 GAV 378


>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
          Length = 734

 Score =  194 bits (494), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 156/568 (27%), Positives = 240/568 (42%), Gaps = 118/568 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLF 64
           +    +LQ C     +  GKQ+H   LK G   S    I  +L+  Y +C +   +  LF
Sbjct: 52  EIFGEILQGCVYDRDLSTGKQIHARVLKNGEFYSRNEYIETKLVVFYAKCDDLEISESLF 111

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKNDFSWNM 108
             +  RN FSW A++    ++G  E +L  F                NV        W+ 
Sbjct: 112 SRLRIRNVFSWAAIVGVRSRIGFSEDALTGFVEMLETEISPDNFVVPNVCKACGVLRWSR 171

Query: 109 L---ISGF--------------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
               + GF                     K G L  AR +F+++P RN +AWN+M+  YV
Sbjct: 172 FGRSVHGFVMKSRLHDCVFVASSLADMYGKRGFLDDARKVFDEIPERNVVAWNAMMVGYV 231

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG   EA+RL  ++  + +E  +     ++  + A A++  +E GKQ H+  +VNGL+ 
Sbjct: 232 QNGMNEEAIRLLSDMKEEGIEPTRV---TVSMCLSASANIGGIEEGKQSHAVAIVNGLEM 288

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D++LG+SL+N Y K G    A                                 VFDR  
Sbjct: 289 DNILGTSLLNFYCKVGLIEYAEM-------------------------------VFDRMI 317

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V WN +ISGY+       A+ +   MR   +  D  TL++++S  +    L+ GK+
Sbjct: 318 GKDVVTWNLLISGYVQQGLVENAIDMCRLMRVENLKFDCVTLSTLMSVAARTRDLKLGKE 377

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG- 384
           V  +  +     D+ +AS  +D Y++ G   DA K+F      D IL N ++  Y+  G 
Sbjct: 378 VLCYCIRHSFESDIGLASTAVDMYAECGSVVDAKKVFDATVQKDLILWNALLAAYTESGH 437

Query: 385 ----------------------------------RIEDAKHIFRTM------PNKSLISW 404
                                             ++ +AK +F  M      PN  LISW
Sbjct: 438 SGEALRLFYEMQLQSVPPNVITRNLIMRSLLGNGQVSEAKEMFSQMQSSGIFPN--LISW 495

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            +M+ GL QNG   EA+     M +   R +  S+A  +SACAN++SL LG  +   +  
Sbjct: 496 TTMMNGLVQNGCSEEAILFLRKMLESGARPNTVSIAIALSACANLASLHLGTSIHGYIIR 555

Query: 465 IGLDSDQI-ISTSLVDFYCKCGFIKMDE 491
               S  + + TSLVD Y KCG I   E
Sbjct: 556 NQQHSSSVLVDTSLVDMYAKCGDINKAE 583



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/528 (21%), Positives = 222/528 (42%), Gaps = 114/528 (21%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C        G+ +H  F+ K  L+  + +A+ L  MY + G   DA  +FDE+P RN 
Sbjct: 162 KACGVLRWSRFGRSVH-GFVMKSRLHDCVFVASSLADMYGKRGFLDDARKVFDEIPERNV 220

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------------- 101
            +WNAM+ G+++ G  E++++L + M ++                               
Sbjct: 221 VAWNAMMVGYVQNGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSASANIGGIEEGKQSHAV 280

Query: 102 --------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                   ++     L++ + K G ++ A  +F+ M  ++ + WN +I  YV+ G    A
Sbjct: 281 AIVNGLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVENA 340

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + + + +    VE L+ D   L+T++   A    L+ GK++  + + +  + D  L S+ 
Sbjct: 341 IDMCRLMR---VENLKFDCVTLSTLMSVAARTRDLKLGKEVLCYCIRHSFESDIGLASTA 397

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS---- 269
           V++Y +CG    A +V +   + D    +AL++ Y   G   +A R+F      S     
Sbjct: 398 VDMYAECGSVVDAKKVFDATVQKDLILWNALLAAYTESGHSGEALRLFYEMQLQSVPPNV 457

Query: 270 -----------------------------------VMWNSMISGYISNNEDTEALLLFHK 294
                                              + W +M++G + N    EA+L   K
Sbjct: 458 ITRNLIMRSLLGNGQVSEAKEMFSQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRK 517

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M  +G   +  ++A  LSAC++L  L  G  +HG+  +    +    +S L+DT      
Sbjct: 518 MLESGARPNTVSIAIALSACANLASLHLGTSIHGYIIR----NQQHSSSVLVDT------ 567

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF--RTMPNKSLISWNSMIVGLS 412
                               +++ +Y+ CG I  A+ +F  +      L  + +MI   +
Sbjct: 568 --------------------SLVDMYAKCGDINKAERVFGSKLYSEFELPLYGAMISAYA 607

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
             G   EA+ L+ N+ ++ +  D  ++ S++SAC N    +   ++FA
Sbjct: 608 LYGKLKEAVTLYRNLEEIGIEPDDKTITSLLSACKNAGDTKQAIEIFA 655



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 179/403 (44%), Gaps = 76/403 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+        + +GK++  + ++     S + +A+  + MY  CG+  DA  +FD  
Sbjct: 359 LSTLMSVAARTRDLKLGKEVLCYCIRHS-FESDIGLASTAVDMYAECGSVVDAKKVFDAT 417

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            +++   WNA++  + + GH  ++L+LF  M       N  + N+++      G++  A+
Sbjct: 418 VQKDLILWNALLAAYTESGHSGEALRLFYEMQLQSVPPNVITRNLIMRSLLGNGQVSEAK 477

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F+ M       N I+W +M++  V+NG + EA+   +++   L    + +   +A  +
Sbjct: 478 EMFSQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKM---LESGARPNTVSIAIAL 534

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVL-GSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            ACA+LA+L  G  IH +I+ N     SVL  +SLV++Y K                   
Sbjct: 535 SACANLASLHLGTSIHGYIIRNQQHSSSVLVDTSLVDMYAK------------------- 575

Query: 239 FCLSALISGYANCGKMNDARRVFDRT--TDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                       CG +N A RVF     ++    ++ +MIS Y    +  EA+ L+  + 
Sbjct: 576 ------------CGDINKAERVFGSKLYSEFELPLYGAMISAYALYGKLKEAVTLYRNLE 623

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
             G+  D  T+ S+LSAC + G  +   ++       G++             SK GM  
Sbjct: 624 EIGIEPDDKTITSLLSACKNAGDTKQAIEIFA-----GMV-------------SKHGM-- 663

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
             C     L+ Y     + M+ + +S G +E A  +   MP K
Sbjct: 664 KPC-----LEHY-----SLMVELLASAGEVEKALRLVEEMPYK 696



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-- 65
           +A  L +C    S+H+G  +H + ++    +S++ +   L+ MY +CG+   A  +F   
Sbjct: 530 IAIALSACANLASLHLGTSIHGYIIRNQQHSSSVLVDTSLVDMYAKCGDINKAERVFGSK 589

Query: 66  -----EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKA 116
                E+P      + AMI  +   G  ++++ L+     +  + +D +   L+S    A
Sbjct: 590 LYSEFELPL-----YGAMISAYALYGKLKEAVTLYRNLEEIGIEPDDKTITSLLSACKNA 644

Query: 117 GELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G+ K A  +F  M  ++ +      ++ M+      G   +A+RL +E+        + D
Sbjct: 645 GDTKQAIEIFAGMVSKHGMKPCLEHYSLMVELLASAGEVEKALRLVEEMP------YKPD 698

Query: 172 AFILATVIGACADLAALEYGKQIHSHILV 200
           A ++ +++ +C      E  + I  H++V
Sbjct: 699 ARVIQSLLDSCNKQHKTELMEYISKHLVV 727



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           S  S+   +  LS+NG   EAL L   M+  +LR+       ++  C     L  G+Q+ 
Sbjct: 15  STTSYFHRVSSLSKNGEINEALRLVTEMDFRNLRIGPEIFGEILQGCVYDRDLSTGKQIH 74

Query: 460 ARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
           ARV   G     ++ I T LV FY KC  +++ E
Sbjct: 75  ARVLKNGEFYSRNEYIETKLVVFYAKCDDLEISE 108


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 237/478 (49%), Gaps = 49/478 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + G   +A  LFD MP+RN  SWN+MI G++     E + +LF+ M +++ +
Sbjct: 50  NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIY 109

Query: 105 SWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           SW ++I+ + + GEL+ AR LFN +P +++ +  N++I  Y +    REA +LF E+   
Sbjct: 110 SWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM--- 166

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS-------LVNL 216
                     ++  V+   + L+   Y K     +   GL F   +G         +V+ 
Sbjct: 167 ----------LVKNVVSWNSILSG--YTKNGKMQL---GLQFFEAMGERNVVSWNLMVDG 211

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
           Y   GD +SA      +  P+      ++SG+A+ G+M +AR +F+     + V WN+MI
Sbjct: 212 YVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMI 271

Query: 277 SGYISNNEDTEALLLFHKMR---------------RNGVLEDASTLASVL-----SACSS 316
             Y+  N+  +A  LF +M                R G L  A  + +++     +A ++
Sbjct: 272 GAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTA 331

Query: 317 L--GFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           +  G+L+ G+    +     + + D +  ++++  Y+  G   +A +LF E+   D +  
Sbjct: 332 MINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSW 391

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI  Y+  G+++ A  +F  M  ++++SWNS+I G  QNG   EAL+ F  M +   +
Sbjct: 392 NTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEK 451

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            D+ ++   + A AN+++L +G Q+       G  +D  +  +++  Y K G +   E
Sbjct: 452 PDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAE 509



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 214/451 (47%), Gaps = 75/451 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G     L  F+ M  RN  SWN M++G++ +G  + +   F  +P  N  
Sbjct: 175 NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVV 234

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  ++SGFA  G +  AR LFN+MP +N ++WN+MI  YVR     +A +LF E+    
Sbjct: 235 SWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEK- 293

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDF 223
                 D+     +I     +     GK + +  ++N + + ++   ++++N Y + G  
Sbjct: 294 ------DSVSWTAMINGYVRV-----GKLLQAREILNLMPYKNIAAQTAMINGYLQSGRM 342

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF---------------------- 261
           + AN++ + +   D  C +++I+GYA+CG+ ++A R+F                      
Sbjct: 343 DEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAG 402

Query: 262 ---------DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                    +   + + V WNS+I+GY+ N    EAL  F  M++ G   D +T+   L 
Sbjct: 403 QMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLR 462

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           A ++L  L  G Q+H    K G  +D+ V +A+L                          
Sbjct: 463 ASANLAALNVGVQLHHLTIKTGFGNDLFVKNAIL-------------------------- 496

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                T+Y+  GR+ +A+++F  +  K ++SWNS+I G + NG   EA++LF  M    +
Sbjct: 497 -----TMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGI 551

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT 463
             D+ +   ++SAC +   ++ G  +F  +T
Sbjct: 552 IPDEVTFTGLLSACNHGGFVDQGLNLFKSMT 582



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 38/305 (12%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + VGK L    +   +    +     ++  Y++ G   +A  +F ++  R+   WN+MI 
Sbjct: 306 VRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMIT 365

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G+   G  +++L+LF  M  K+  SWN +I+ +A+AG++  A  +FN+M  RN ++WNS+
Sbjct: 366 GYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL 425

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  YV+NG   EA+  F  +     +  + D   +   + A A+LAAL  G Q+H   + 
Sbjct: 426 ITGYVQNGLYFEALNCFILMKQ---QGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIK 482

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA--NCGKMNDAR 258
            G   D  + ++++ +Y K G    A  V   +K  D    ++LI+GYA   CGK     
Sbjct: 483 TGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGK----- 537

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
                                       EA+ LF  M   G++ D  T   +LSAC+  G
Sbjct: 538 ----------------------------EAVELFEVMPLRGIIPDEVTFTGLLSACNHGG 569

Query: 319 FLEHG 323
           F++ G
Sbjct: 570 FVDQG 574



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           + G   +A  +F ++   + +  N+MI+ Y+  GRI +A+ +F  MP ++L+SWNSMI G
Sbjct: 27  RSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAG 86

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
              N    +A  LF  M K D+    +S   +I+    I  LE   ++F    ++    D
Sbjct: 87  YLHNELVEDAARLFDRMFKRDI----YSWTLMITCYTRIGELEKARELF---NLLPDKQD 139

Query: 471 QIISTSLVDFYCK 483
            +   +L+  Y K
Sbjct: 140 TVCRNALIAGYAK 152


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 241/476 (50%), Gaps = 43/476 (9%)

Query: 19   HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR----NCFS 74
            +++H    +  H + K I + T  + N LL+   +   P DA++ + +   +    +  +
Sbjct: 883  YALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLT 942

Query: 75   WNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMP 130
            +  +++   K    ++  Q+ N + +     + F  N LI  +A  G L  AR++FN+M 
Sbjct: 943  FPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEML 1002

Query: 131  RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             ++ ++WNS+I  Y ++   +E + LFK + +   E +Q D   +  VI AC  L     
Sbjct: 1003 VKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQA---EEVQADKVTMVKVISACTHLGDWSM 1059

Query: 191  GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
               +  +I  N ++ D  LG++L++ Y + G   SA +V + MK+ +   L+A+I+ YA 
Sbjct: 1060 ADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAK 1119

Query: 251  CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
             G +  A+++FD+  +   + W+SMI  Y   +  +++L LF +M+R  V  DA  +ASV
Sbjct: 1120 GGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASV 1179

Query: 311  LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
            LSAC+ LG L+ GK +H                     Y +R          + +K  DT
Sbjct: 1180 LSACAHLGALDLGKWIH--------------------DYVRR----------NNIKA-DT 1208

Query: 371  ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            I+ N++I +++ CG +++A  +F  M  K  +SWNS+I+GL+ NG   EALD+F +M   
Sbjct: 1209 IMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTE 1268

Query: 431  DLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
              R ++ +   V+ ACAN   +E G   F R+ ++  L+        +VD   + G
Sbjct: 1269 GPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAG 1324



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 184/377 (48%), Gaps = 46/377 (12%)

Query: 118  ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            +L +A  +F  +       WN+++    ++   ++A+  +K+      + ++ D      
Sbjct: 889  DLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQE---KGMKPDNLTFPF 945

Query: 178  VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
            V+ ACA   A + G+Q+H+H++  G   D  + +SL+ LY                    
Sbjct: 946  VLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLY-------------------- 985

Query: 238  DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
                       A CG +  AR VF+       V WNS+I GY  +N   E L LF  M+ 
Sbjct: 986  -----------AACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQA 1034

Query: 298  NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID------DVIVASALLDTYSK 351
              V  D  T+  V+SAC+ LG            C V  I+      DV + + L+D Y +
Sbjct: 1035 EEVQADKVTMVKVISACTHLGDWSMAD------CMVRYIEHNHIEVDVYLGNTLIDYYCR 1088

Query: 352  RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
             G    A K+FS++K  +T+ LN MIT Y+  G +  AK IF  +PNK LISW+SMI   
Sbjct: 1089 IGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAY 1148

Query: 412  SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            SQ     ++L+LF  M +  ++ D   +ASV+SACA++ +L+LG+ +   V    + +D 
Sbjct: 1149 SQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADT 1208

Query: 472  IISTSLVDFYCKCGFIK 488
            I+  SL+D + KCG ++
Sbjct: 1209 IMENSLIDMFAKCGCVQ 1225



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 123/515 (23%), Positives = 230/515 (44%), Gaps = 79/515 (15%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMI 79
            I +G+ L+ +  KKGI+ S   + N L+ +Y + G+  ++L +FDEM  RRN  SW ++I
Sbjct: 627  ILMGEMLNGYCEKKGIM-SDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSII 685

Query: 80   EGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
             GF   G   ++L+LF  M     + N  ++  +I+  +  G ++     F  M     I
Sbjct: 686  SGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNI 745

Query: 136  -----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                  +  +I    R G   EA ++ + L       ++ +  +   ++G C+    +  
Sbjct: 746  DPEIKHFGCIIDMLGRAGRLCEAEQIIEGLP------MEVNVTVWRILLGCCSKYGEVAM 799

Query: 191  G----KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN----------MMKEP 236
            G    K I      +G DF +VL + L  L G+  D   A ++L+          +M+  
Sbjct: 800  GERAIKMISDLERESGGDF-AVLSNVLTEL-GRFSDAEQARKLLDQRKIVKLQEAVMEAV 857

Query: 237  DDFCLSALISGYANC---------------GKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                   ++SG  NC                 +  A +VF +    ++ +WN+++ G   
Sbjct: 858  KKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQ 917

Query: 282  NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
            ++   +A++ + K +  G+  D  T   VL AC+     + G+Q+H H  K+G + D+ V
Sbjct: 918  SDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFV 977

Query: 342  ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +                               N++I +Y++CG +  A+ +F  M  K +
Sbjct: 978  S-------------------------------NSLIYLYAACGALACARSVFNEMLVKDV 1006

Query: 402  ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
            +SWNS+I G SQ+    E L LF  M   +++ DK ++  VISAC ++    + + +   
Sbjct: 1007 VSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY 1066

Query: 462  VTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            +    ++ D  +  +L+D+YC+ G ++  E    Q
Sbjct: 1067 IEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQ 1101



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 164/340 (48%), Gaps = 38/340 (11%)

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           +TA  +F+  P      W + +  Y    F  EA+ LFK     L +    D F+   V+
Sbjct: 435 RTALKVFDQSP----APWRAFLKAYSHGPFPLEALHLFKHARQHLAD----DTFVFTFVL 486

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA L     G Q+H+ ++  G +F + + ++L+N+Y        A +V + M   +  
Sbjct: 487 KACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVV 546

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
             + +I+G+A  G++  AR +FD+    + V W  +I GY       EAL L   M   G
Sbjct: 547 SWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGG 606

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +     T+ +V+ A S+LG +  G+ ++G+  K G++ D  V ++L+D Y+K G      
Sbjct: 607 ISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIG------ 660

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            + + LKV+D +L                          ++L+SW S+I G + +G  +E
Sbjct: 661 SVQNSLKVFDEML------------------------DRRNLVSWTSIISGFAMHGLSVE 696

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           AL+LF  M +  ++ ++ +  SVI+AC++   +E G   F
Sbjct: 697 ALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFF 736



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 163/380 (42%), Gaps = 99/380 (26%)

Query: 11   LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +L++C    +   G+Q+H H +K G L     ++N L+ +Y  CG    A  +F+EM  +
Sbjct: 946  VLKACAKTCAPKEGEQMHNHVIKLGFLLDIF-VSNSLIYLYAACGALACARSVFNEMLVK 1004

Query: 71   NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW----- 106
            +  SWN++I G+ +    ++ L LF +M  +                    D+S      
Sbjct: 1005 DVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMV 1064

Query: 107  ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                           N LI  + + G+L++A  +F+ M  +N +  N+MI  Y + G   
Sbjct: 1065 RYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLV 1124

Query: 152  EAVRLFKEL-NSDLVE---------------------------RLQCDAFILATVIGACA 183
             A ++F ++ N DL+                            +++ DA ++A+V+ ACA
Sbjct: 1125 SAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACA 1184

Query: 184  DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
             L AL+ GK IH ++  N +  D+++ +SL++++ KCG    A QV   M+E D    ++
Sbjct: 1185 HLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNS 1244

Query: 244  LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            +I G AN                               N  + EAL +FH M   G   +
Sbjct: 1245 IILGLAN-------------------------------NGFEDEALDIFHSMLTEGPRPN 1273

Query: 304  ASTLASVLSACSSLGFLEHG 323
              T   VL AC++   +E G
Sbjct: 1274 EVTFLGVLIACANRQLVEEG 1293



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 35/235 (14%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
           ++ ++F+ MP KN  SWN++I+GFA  GE++ AR LF+ MP RN ++W  +I  Y R   
Sbjct: 532 EARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL 591

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA+ L + +   +   +      +  VI A ++L  +  G+ ++ +    G+  D+ +
Sbjct: 592 YAEALTLLRHM---MAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARV 648

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G+SL++LY K G                                + ++ +VFD   D  +
Sbjct: 649 GNSLIDLYAKIGS-------------------------------VQNSLKVFDEMLDRRN 677

Query: 270 -VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            V W S+ISG+  +    EAL LF +MRR G+  +  T  SV++ACS  G +E G
Sbjct: 678 LVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQG 732



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A +VFD+    S   W + +  Y       EAL LF K  R  + +D      VL AC+ 
Sbjct: 437 ALKVFDQ----SPAPWRAFLKAYSHGPFPLEALHLF-KHARQHLADDTFVFTFVLKACAG 491

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           LG+   G Q+H    + G      V +AL++ Y       +A K+F E+ V + +  N M
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           IT ++  G +E A+ +F  MP ++++SW  +I G ++     EAL L  +M    +   +
Sbjct: 552 ITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSE 611

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++ +VI A +N+  + +GE +       G+ SD  +  SL+D Y K G ++
Sbjct: 612 ITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQ 663


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 230/471 (48%), Gaps = 47/471 (9%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIEG 81
           VGK      L  G+    +     ++  Y++ G+  +A  LFD +  R+N  +W AM+ G
Sbjct: 59  VGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSG 118

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           +++      +  LF  MP++N  SWN +I G+A++G +  A  LF++MP RN ++WNSM+
Sbjct: 119 YLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMV 178

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              V+ G   EA+ LF+ +        + D      ++   A    ++  +++   +   
Sbjct: 179 KALVQRGRIDEAMNLFERMP-------RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 231

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
            +    +  ++++  Y +    + A+Q+  +M E D    + +I+G+    +MN A  +F
Sbjct: 232 NI----ISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLF 287

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFL 320
           DR  + + + W +MI+GY+ N E+ EAL +F KM R+G V  +  T  S+LSACS L  L
Sbjct: 288 DRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGL 347

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G+Q+H    K     + IV SALL+ YSK G      +L +  K++D  L+       
Sbjct: 348 VEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG------ELIAARKMFDNGLV------- 394

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             C R               LISWNSMI   + +G   EA++++  M K   +    +  
Sbjct: 395 --CQR--------------DLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYL 438

Query: 441 SVISACANISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +++ AC++   +E G + F    R   + L  +    T LVD   + G +K
Sbjct: 439 NLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHY--TCLVDLCGRAGRLK 487



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 186/407 (45%), Gaps = 61/407 (14%)

Query: 89  EKSLQLFNVM---------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           ++S+QLFN++         P+     W  LI    K G++  AR LF+ +P R+ + W  
Sbjct: 25  DRSVQLFNLVRSIYSSSSRPRVPQPEW--LIGELCKVGKIAEARKLFDGLPERDVVTWTH 82

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  Y++ G  REA  LF  ++S                                     
Sbjct: 83  VITGYIKLGDMREARELFDRVDSRK----------------------------------- 107

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
                 + V  +++V+ Y +    + A  +   M E +    + +I GYA  G+++ A  
Sbjct: 108 ------NVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALE 161

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FD   + + V WNSM+   +      EA+ LF +M R  V+    +  +++   +  G 
Sbjct: 162 LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVV----SWTAMVDGLAKNGK 217

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           ++  +++     +     ++I  +A++  Y++     +A +LF  +   D    NTMIT 
Sbjct: 218 VDEARRLFDCMPE----RNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITG 273

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFS 438
           +     +  A  +F  MP K++ISW +MI G  +N    EAL++F  M     ++ +  +
Sbjct: 274 FIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGT 333

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             S++SAC++++ L  G+Q+   ++      ++I++++L++ Y K G
Sbjct: 334 YVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG 380


>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 607

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 230/502 (45%), Gaps = 110/502 (21%)

Query: 67  MPRRNCFSWNAM-----IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
           + R+  FS++A+     +    K G  +++  +F+ +P++++FSWN +I+ +A +G L  
Sbjct: 12  IARQTGFSYSAIKSNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANSGRLTD 71

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A+ LF + P +++I W+S+I  + +  F  EA  L+ ++     E  + + + L +++  
Sbjct: 72  AKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQ---FEGQRPNHYTLGSILRL 128

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C+    L+ G++IH + +   LD +  + +SLV+LY K                      
Sbjct: 129 CSRTGFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAK---------------------- 166

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                    C  +++A  +F+   D+ +   W +M++GY  N +   A+  F  MR  GV
Sbjct: 167 ---------CECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRAIKCFRDMRAEGV 217

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK--------- 351
             +  T  S+L+AC ++     G QVHG   + G   ++ V SAL+D Y+K         
Sbjct: 218 ESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQSALVDMYAKCRDLNSANR 277

Query: 352 ----------------------RGMPSDACKLFSELKVYD-------------------- 369
                                  G  ++A  LF+E+   D                    
Sbjct: 278 VLENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKD 337

Query: 370 -------------------TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                              T++ N ++ +Y+  G ++ A  +F  MP+K ++SW S++ G
Sbjct: 338 IQSAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTG 397

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            S NGS  +A+ LFC+M    +  D+  LASV+SACA ++  E G+QV A +   GL S 
Sbjct: 398 YSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVHATILKSGLCSS 457

Query: 471 QIISTSLVDFYCKCGFIKMDEY 492
             I  SLV  Y KCG I+   Y
Sbjct: 458 LSIDNSLVTMYAKCGGIEDANY 479



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 219/492 (44%), Gaps = 106/492 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C+    +  G+++H + +K   L++ + +   L+ +Y +C   ++A  +F+ +
Sbjct: 122 LGSILRLCSRTGFLQKGERIHGYAIKTR-LDANVFVVTSLVDLYAKCECISEAEYIFEMV 180

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW---------------- 106
              +N  +W AM+ G+   G   ++++ F  M     + N F++                
Sbjct: 181 ADSKNHATWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFG 240

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              + L+  +AK  +L +A  +  +M   + ++WNSMI   VR 
Sbjct: 241 VQVHGCIVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVRE 300

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           GF  EA+ LF E+++     ++ D +   +V+ + A +  ++  K  H  I+  G    +
Sbjct: 301 GFEAEALSLFNEMHA---RDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIKTGFGAYT 357

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           ++ ++LV++Y K G+                               ++ A  VF++  D 
Sbjct: 358 LVNNALVDMYAKQGN-------------------------------LDYAFTVFNQMPDK 386

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W S+++GY  N    +A+ LF  MR  GV  D   LASVLSAC+ L   E G+QVH
Sbjct: 387 DVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVH 446

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
               K G+                       C   S        + N+++T+Y+ CG IE
Sbjct: 447 ATILKSGL-----------------------CSSLS--------IDNSLVTMYAKCGGIE 475

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA ++F +M  + +ISW ++IVG +QNG   ++L  +  M     + D  +   ++ AC+
Sbjct: 476 DANYVFDSMQIRDVISWTALIVGYAQNGRGKDSLHFYDQMIATGTKPDFITFIGLLFACS 535

Query: 448 NISSLELGEQVF 459
           +   +E G + F
Sbjct: 536 HTGLVEDGRRYF 547



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 147/293 (50%), Gaps = 34/293 (11%)

Query: 195 HSHILV--NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           HS+I+    G  + ++  +  +N   K G  + A  + + + E D+F  + +I+ YAN G
Sbjct: 8   HSYIIARQTGFSYSAIKSNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANSG 67

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           ++ DA+++F      SS+ W+S+ISG+     D EA  L+ +M+  G   +  TL S+L 
Sbjct: 68  RLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQFEGQRPNHYTLGSILR 127

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
            CS  GFL+ G+++HG+A K  +  +V V ++L+D Y+K                     
Sbjct: 128 LCSRTGFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAK--------------------- 166

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                     C  I +A++IF  + + K+  +W +M+ G S NG    A+  F +M    
Sbjct: 167 ----------CECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRAIKCFRDMRAEG 216

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  ++F+  S+++AC  +S    G QV   +   G  ++  + ++LVD Y KC
Sbjct: 217 VESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQSALVDMYAKC 269



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C        G+Q+H   LK G L S+L I N L+ MY +CG   DA  +FD M
Sbjct: 426 LASVLSACAELTVTEFGQQVHATILKSG-LCSSLSIDNSLVTMYAKCGGIEDANYVFDSM 484

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKNDF-SWNMLISGFAKAGELKTAR 123
             R+  SW A+I G+ + G  + SL  ++ M     K DF ++  L+   +  G ++  R
Sbjct: 485 QIRDVISWTALIVGYAQNGRGKDSLHFYDQMIATGTKPDFITFIGLLFACSHTGLVEDGR 544

Query: 124 TLFNDMPRR 132
             F  M + 
Sbjct: 545 RYFESMDKE 553


>gi|255581219|ref|XP_002531422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528972|gb|EEF30964.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 619

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 199/416 (47%), Gaps = 68/416 (16%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           ++  +++ G    A  L+ E+P   R     NAMI G++K+G  E+++++F    +K+  
Sbjct: 95  MITGFLKAGMFEKAENLYREIPAKWREPVCSNAMISGYLKVGRLEEAIKVFEGTVEKDVV 154

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW+ ++ G+ K G +  AR LFN MP RN + W SMI  Y+  GF      LF  +    
Sbjct: 155 SWSSMVDGYCKKGRIFEARELFNMMPVRNVVTWTSMIDGYMNVGFFENGFSLFLSMR--- 211

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++ +   L  +  AC          Q+H  +L  G +FD  LG+S++ +Y + G  +
Sbjct: 212 -RVIEVNPLTLTIMFEACRHFGRYREAMQVHGLVLRIGFEFDIFLGNSIIAMYCEFGCMD 270

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR---------TT---------- 265
            A ++  MM   D    ++LISGY    ++ +A ++F++         TT          
Sbjct: 271 EAKRMFQMMNNKDVVSWNSLISGYIQHDEIEEAYKLFEKIPGKDVVSWTTMITGFSAKGN 330

Query: 266 ------------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                       +   V W ++ISG++SN E  EA L F +M +  V  ++ T +S+L+A
Sbjct: 331 VQKGIQLFKIMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEMLKKAVKPNSLTFSSMLTA 390

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +SL  L  G Q+H H  K+ V                                +D  + 
Sbjct: 391 SASLATLNQGLQIHAHVEKMDV-------------------------------QFDLSIR 419

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           N+++++YS CG I +A  +F ++   ++IS+NSMI G SQNG   EALDLF  M K
Sbjct: 420 NSLVSMYSKCGNIAEAYQVFTSINAPNIISFNSMITGFSQNGHGEEALDLFSKMRK 475



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 202/435 (46%), Gaps = 44/435 (10%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           G+ E+S  +FN MP KN  +   +++ +AK G++  A+ LF++MP R    +N+MI  Y+
Sbjct: 9   GNIEESESIFNRMPHKNVITHTSMLTAYAKNGQIAKAKKLFDEMPERTTATYNAMITAYI 68

Query: 146 RNG-FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           RN     EA  LF    S + ER   +A     +I         E  + ++  I     +
Sbjct: 69  RNSCMVDEAFSLF----SRMSER---NAVSYGAMITGFLKAGMFEKAENLYREIPAKWRE 121

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
              V  +++++ Y K G    A +V     E D    S+++ GY   G++ +AR +F+  
Sbjct: 122 --PVCSNAMISGYLKVGRLEEAIKVFEGTVEKDVVSWSSMVDGYCKKGRIFEARELFNMM 179

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHG 323
              + V W SMI GY++         LF  MRR  V+E +  TL  +  AC   G     
Sbjct: 180 PVRNVVTWTSMIDGYMNVGFFENGFSLFLSMRR--VIEVNPLTLTIMFEACRHFGRYREA 237

Query: 324 KQVHGHA-------------------CKVGVID------------DVIVASALLDTYSKR 352
            QVHG                     C+ G +D            DV+  ++L+  Y + 
Sbjct: 238 MQVHGLVLRIGFEFDIFLGNSIIAMYCEFGCMDEAKRMFQMMNNKDVVSWNSLISGYIQH 297

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
               +A KLF ++   D +   TMIT +S+ G ++    +F+ MP K  ++W ++I G  
Sbjct: 298 DEIEEAYKLFEKIPGKDVVSWTTMITGFSAKGNVQKGIQLFKIMPEKDDVAWTAVISGFV 357

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
            NG   EA   F  M K  ++ +  + +S+++A A++++L  G Q+ A V  + +  D  
Sbjct: 358 SNGEYEEAFLWFIEMLKKAVKPNSLTFSSMLTASASLATLNQGLQIHAHVEKMDVQFDLS 417

Query: 473 ISTSLVDFYCKCGFI 487
           I  SLV  Y KCG I
Sbjct: 418 IRNSLVSMYSKCGNI 432



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 193/446 (43%), Gaps = 100/446 (22%)

Query: 47  LLQMYMRCGNPTDALLLFDEMP--------------------------------RRNCFS 74
           +L  Y + G    A  LFDEMP                                 RN  S
Sbjct: 32  MLTAYAKNGQIAKAKKLFDEMPERTTATYNAMITAYIRNSCMVDEAFSLFSRMSERNAVS 91

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMP---------------------------------QK 101
           + AMI GF+K G  EK+  L+  +P                                 +K
Sbjct: 92  YGAMITGFLKAGMFEKAENLYREIPAKWREPVCSNAMISGYLKVGRLEEAIKVFEGTVEK 151

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           +  SW+ ++ G+ K G +  AR LFN MP RN + W SMI  Y+  GF      LF  + 
Sbjct: 152 DVVSWSSMVDGYCKKGRIFEARELFNMMPVRNVVTWTSMIDGYMNVGFFENGFSLFLSMR 211

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
                 ++ +   L  +  AC          Q+H  +L  G +FD  LG+S++ +Y + G
Sbjct: 212 ----RVIEVNPLTLTIMFEACRHFGRYREAMQVHGLVLRIGFEFDIFLGNSIIAMYCEFG 267

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR---------TT------- 265
             + A ++  MM   D    ++LISGY    ++ +A ++F++         TT       
Sbjct: 268 CMDEAKRMFQMMNNKDVVSWNSLISGYIQHDEIEEAYKLFEKIPGKDVVSWTTMITGFSA 327

Query: 266 ---------------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                          +   V W ++ISG++SN E  EA L F +M +  V  ++ T +S+
Sbjct: 328 KGNVQKGIQLFKIMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEMLKKAVKPNSLTFSSM 387

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L+A +SL  L  G Q+H H  K+ V  D+ + ++L+  YSK G  ++A ++F+ +   + 
Sbjct: 388 LTASASLATLNQGLQIHAHVEKMDVQFDLSIRNSLVSMYSKCGNIAEAYQVFTSINAPNI 447

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTM 396
           I  N+MIT +S  G  E+A  +F  M
Sbjct: 448 ISFNSMITGFSQNGHGEEALDLFSKM 473



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 135/256 (52%), Gaps = 4/256 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + ++C          Q+H   L+ G     + + N ++ MY   G   +A  +F  M
Sbjct: 221 LTIMFEACRHFGRYREAMQVHGLVLRIG-FEFDIFLGNSIIAMYCEFGCMDEAKRMFQMM 279

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SWN++I G+++    E++ +LF  +P K+  SW  +I+GF+  G ++    LF 
Sbjct: 280 NNKDVVSWNSLISGYIQHDEIEEAYKLFEKIPGKDVVSWTTMITGFSAKGNVQKGIQLFK 339

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ +AW ++I  +V NG   EA   F E+   L + ++ ++   ++++ A A LA 
Sbjct: 340 IMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEM---LKKAVKPNSLTFSSMLTASASLAT 396

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QIH+H+    + FD  + +SLV++Y KCG+   A QV   +  P+    +++I+G
Sbjct: 397 LNQGLQIHAHVEKMDVQFDLSIRNSLVSMYSKCGNIAEAYQVFTSINAPNIISFNSMITG 456

Query: 248 YANCGKMNDARRVFDR 263
           ++  G   +A  +F +
Sbjct: 457 FSQNGHGEEALDLFSK 472



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 130/274 (47%), Gaps = 8/274 (2%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           ++N +G  G+   +  + N M   +    +++++ YA  G++  A+++FD   + ++  +
Sbjct: 1   MINKHGNNGNIEESESIFNRMPHKNVITHTSMLTAYAKNGQIAKAKKLFDEMPERTTATY 60

Query: 273 NSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           N+MI+ YI N+    EA  LF +M     +   + +   L A    G  E  + ++    
Sbjct: 61  NAMITAYIRNSCMVDEAFSLFSRMSERNAVSYGAMITGFLKA----GMFEKAENLYREIP 116

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
                 + + ++A++  Y K G   +A K+F      D +  ++M+  Y   GRI +A+ 
Sbjct: 117 --AKWREPVCSNAMISGYLKVGRLEEAIKVFEGTVEKDVVSWSSMVDGYCKKGRIFEARE 174

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  MP +++++W SMI G    G       LF +M ++ + ++  +L  +  AC +   
Sbjct: 175 LFNMMPVRNVVTWTSMIDGYMNVGFFENGFSLFLSMRRV-IEVNPLTLTIMFEACRHFGR 233

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                QV   V  IG + D  +  S++  YC+ G
Sbjct: 234 YREAMQVHGLVLRIGFEFDIFLGNSIIAMYCEFG 267



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +  +  +++ G Q+H H ++K  +   L I N L+ MY +CGN  +A  +F  +
Sbjct: 384 FSSMLTASASLATLNQGLQIHAH-VEKMDVQFDLSIRNSLVSMYSKCGNIAEAYQVFTSI 442

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
              N  S+N+MI GF + GH E++L LF+ M ++N 
Sbjct: 443 NAPNIISFNSMITGFSQNGHGEEALDLFSKMRKENQ 478



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 39/148 (26%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS--- 105
           GN    + LF  MP ++  +W A+I GF+  G  E++   F       V P    FS   
Sbjct: 329 GNVQKGIQLFKIMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEMLKKAVKPNSLTFSSML 388

Query: 106 ------------------------------WNMLISGFAKAGELKTARTLFNDMPRRNAI 135
                                          N L+S ++K G +  A  +F  +   N I
Sbjct: 389 TASASLATLNQGLQIHAHVEKMDVQFDLSIRNSLVSMYSKCGNIAEAYQVFTSINAPNII 448

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSD 163
           ++NSMI  + +NG   EA+ LF ++  +
Sbjct: 449 SFNSMITGFSQNGHGEEALDLFSKMRKE 476


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 136/514 (26%), Positives = 235/514 (45%), Gaps = 105/514 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC    +I +G+ +H      G L+  + + + L++MY   G   DA  +FD M  R
Sbjct: 152 VVKSCAALGAIALGRLVHRTARTLG-LDGDMFVGSALIKMYANGGLLWDARQVFDGMAER 210

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-------------------NVMPQKNDFSW----- 106
           +C  WN M++G++K G    +++LF                   +V   ++D  +     
Sbjct: 211 DCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLH 270

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+S +AK   L     LF  MPR + + WN MI   V+NGF  
Sbjct: 271 TLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVD 330

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF ++       ++ D+  L +++ A  DL     GK++H +I+ N +  D     
Sbjct: 331 QALLLFCDMQK---SGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV---- 383

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                      F +SAL+  Y  C  +  A+ V+D +     V+
Sbjct: 384 ---------------------------FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVI 416

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
            ++MISGY+ N    EA+ +F  +   G+  +A  +ASVL AC+S+  ++ G+++H +A 
Sbjct: 417 GSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYAL 476

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K        V SAL+D Y+K                               CGR++ + +
Sbjct: 477 KNAYEGRCYVESALMDMYAK-------------------------------CGRLDLSHY 505

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           IF  +  K  ++WNSMI   +QNG P EAL+LF  M    ++    +++SV+SACA++ +
Sbjct: 506 IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPA 565

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  G+++   V    + +D    ++L+D Y KCG
Sbjct: 566 IYYGKEIHGVVIKGPIRADLFAESALIDMYGKCG 599



 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 145/528 (27%), Positives = 243/528 (46%), Gaps = 116/528 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L    T   +  G QLH   +K G L S + +AN L+ MY +C    D   LF  M
Sbjct: 250 LACFLSVSATESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGWKLFGLM 308

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKND-------- 103
           PR +  +WN MI G ++ G  +++L LF                +++P   D        
Sbjct: 309 PRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGK 368

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          F  + L+  + K   ++ A+++++     + +  ++MI  YV NG
Sbjct: 369 ELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNG 428

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            ++EAV++F+ L   L + ++ +A  +A+V+ ACA +AA++ G+++HS+ L N  +    
Sbjct: 429 MSQEAVKMFRYL---LEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE---- 481

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                    G+C                  +  SAL+  YA CG+++ +  +F + +   
Sbjct: 482 ---------GRC------------------YVESALMDMYAKCGRLDLSHYIFSKISAKD 514

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSMIS +  N E  EAL LF +M   GV     T++SVLSAC+SL  + +GK++HG
Sbjct: 515 EVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHG 574

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K  +  D+   SAL+D Y K                               CG +E 
Sbjct: 575 VVIKGPIRADLFAESALIDMYGK-------------------------------CGNLEW 603

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F +MP K+ +SWNS+I      G   E++ L  +M +   + D  +  +++SACA+
Sbjct: 604 AHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAH 663

Query: 449 ISSLELGEQVFARVTIIGLDSDQIIS-----TSLVDFYCKCGFIKMDE 491
              ++ G ++F  +T    +  QI         +VD Y + G  K+D+
Sbjct: 664 AGQVQEGLRLFRCMT----EEYQIAPRMEHFACMVDLYSRAG--KLDK 705



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/529 (23%), Positives = 225/529 (42%), Gaps = 109/529 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +   + +G Q+H   +  G+  +   +  RL+ MY+      DA+ +F  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 68  PRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVM--------PQKNDFSW---------- 106
           PR        WN +I G    G    +L  +  M        P  + F +          
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  + LI  +A  G L  AR +F+ M  R+ + WN M+  
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           YV+ G    AV LF ++ +   E    +   LA  +   A  + L +G Q+H+  +  GL
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEP---NFATLACFLSVSATESDLFFGVQLHTLAVKYGL 278

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           + +  + ++LV++Y K                               C  ++D  ++F  
Sbjct: 279 ESEVAVANTLVSMYAK-------------------------------CKCLDDGWKLFGL 307

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 V WN MISG + N    +ALLLF  M+++G+  D+ TL S+L A + L     G
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K++HG+  +  V  DV + SAL+D Y K      A  ++   K  D ++ +TMI+ Y   
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGY--- 424

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
                                  ++ G+SQ     EA+ +F  + +  +R +  ++ASV+
Sbjct: 425 -----------------------VLNGMSQ-----EAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            ACA++++++LG+++ +       +    + ++L+D Y KCG + +  Y
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHY 505


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 139/551 (25%), Positives = 240/551 (43%), Gaps = 138/551 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC------------- 54
            + + Q C+   +I+ GKQ H      G +  T+ ++N LLQ Y +C             
Sbjct: 41  FSHIFQKCSNLKAINPGKQAHAQITVTGFV-PTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 55  ------------------GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
                             GN   A  LFD MP R+  SWN+M+  +++ G   KS+++F 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 97  VM---PQKNDF------------------------------------SWNMLISGFAKAG 117
            M     ++D+                                    +   L+  ++   
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +L  A  +F +MP RN++ W+++I  YVRN    E ++L+K +   L E +       A+
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVM---LDEGMGVSQATFAS 276

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
              +CA L+A E G Q+H++ L     +D+++G++ +++Y KC     A +V N    P 
Sbjct: 277 AFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPT 336

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
               +ALI GYA                                 ++  EAL +F  +++
Sbjct: 337 RQSHNALIVGYAR-------------------------------QDQVLEALEIFRSLQK 365

Query: 298 NGVLEDASTLASVLSACSSL-GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           + +  D  +L+  L+ACS++ G+LE G Q+HG A K G+  ++ VA+ +LD Y+K G   
Sbjct: 366 SYLDFDEISLSGALTACSAIKGYLE-GIQLHGLAVKCGLDFNICVANTILDMYAKCGALM 424

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           +AC +F ++++ D +                               SWN++I    QN  
Sbjct: 425 EACLIFDDMEIKDAV-------------------------------SWNAIIAAHEQNEH 453

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             E L LF +M +  +  D ++  SV+ ACA   +L  G +V  RV   G+  D  + ++
Sbjct: 454 VEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSA 513

Query: 477 LVDFYCKCGFI 487
           ++D YCKCG +
Sbjct: 514 IIDMYCKCGML 524



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 229/518 (44%), Gaps = 106/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A   +SC    +  +G QLH + LK       + +    L MY +C    DA  +F+  
Sbjct: 274 FASAFRSCAGLSAFELGTQLHAYALKTNFGYDNI-VGTATLDMYAKCDRMVDARKVFNTF 332

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------------- 102
           P     S NA+I G+ +     ++L++F  + +                           
Sbjct: 333 PNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGI 392

Query: 103 -----------DFS---WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      DF+    N ++  +AK G L  A  +F+DM  ++A++WN++I  + +N 
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNE 452

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              E + LF  +   L   ++ D +   +V+ ACA   AL YG ++H  ++ +G+  D  
Sbjct: 453 HVEETLALFVSM---LRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWF 509

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+++++Y K                               CG + +A ++ +R  + +
Sbjct: 510 VGSAIIDMYCK-------------------------------CGMLVEAEKIHERLEERT 538

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WNS+ISG+ S  +   AL  F +M + GV+ D  T A+VL  C++L  +E GKQ+HG
Sbjct: 539 TVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHG 598

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K+ +  DV +AS ++D YSK                               CG ++D
Sbjct: 599 QILKLQLHSDVYIASTIVDMYSK-------------------------------CGNMQD 627

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           ++ +F   P +  ++W++MI   + +G   +A+ LF  M   +++ +     SV+ ACA+
Sbjct: 628 SRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAH 687

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           +  ++ G   F  + +  GLD      + +VD   + G
Sbjct: 688 MGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSG 725



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T + +   CS+L  +  GKQ H      G +  V V++ LL  Y K    + A  +F ++
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
              D I  NTMI  Y+  G +E A+ +F +MP + ++SWNSM+    QNG   +++++F 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            M  L+++ D  + A V+ AC  I    LG QV      +G DSD +  T+LVD Y  C
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC 218



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           K + + +   C+N+ ++  G+Q  A++T+ G      +S  L+ FYCKC
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKC 86


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 207/454 (45%), Gaps = 101/454 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C    ++  GKQ+H H    G +   L I+NRLL MY +CG+  DA  +FDEM  R
Sbjct: 125 LLKFCLKQRALKEGKQVHAHIKTSGSIG--LYISNRLLDMYAKCGSLVDAEKVFDEMVHR 182

Query: 71  N-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           + C                                SWN++ISG+ K G  + AR LF+ M
Sbjct: 183 DLC--------------------------------SWNIMISGYVKGGNFEKARNLFDKM 210

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLVERLQCDAFILATVIGACADLAAL 188
           P R+  +W ++I   V++    EA+ L++ +   D  +  +C    +++ + A A + +L
Sbjct: 211 PNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKC---TISSALAASAAIPSL 267

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             GK+IH HI+  GLD D V+  SL+++YGK                             
Sbjct: 268 HMGKKIHGHIMRMGLDSDEVVWCSLLDMYGK----------------------------- 298

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG + +AR +FD+  +   V W +MI  Y+ N    E   LF  +  + ++ +  T A
Sbjct: 299 --CGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFA 356

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            VL+AC+ L   + GKQ+H +  +VG       ASAL+  YSK                 
Sbjct: 357 GVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSK----------------- 399

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE+AK +F  +P   L SW S++VG +Q+G   +AL  F  + 
Sbjct: 400 --------------CGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLL 445

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           K   + D  +   V+SACA+   ++ G + F  +
Sbjct: 446 KSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSI 479



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 171/339 (50%), Gaps = 40/339 (11%)

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           REAV+L   +           A I  T++  C    AL+ GKQ+H+HI  +G      + 
Sbjct: 105 REAVQLLYRIEKPY-------ASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYIS 156

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + L+++Y KCG    A +V + M   D    + +ISGY   G    AR +FD+  +  + 
Sbjct: 157 NRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNF 216

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGH 329
            W ++ISG + +N   EAL L+  M+++   + +  T++S L+A +++  L  GK++HGH
Sbjct: 217 SWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGH 276

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             ++G+  D +V  +LLD Y K G   +A  +F +++  D +   TMI  Y   GR E+ 
Sbjct: 277 IMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEG 336

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +FR + N +++                                + F+ A V++ACA++
Sbjct: 337 FALFRHLMNSNIMP-------------------------------NDFTFAGVLNACADL 365

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ +LG+Q+ A +  +G DS    +++LV  Y KCG I+
Sbjct: 366 AAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIE 404



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 6/207 (2%)

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EA+ L +++ +      AS   ++L  C     L+ GKQVH H    G I  + +++ LL
Sbjct: 106 EAVQLLYRIEK----PYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIG-LYISNRLL 160

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y+K G   DA K+F E+   D    N MI+ Y   G  E A+++F  MPN+   SW +
Sbjct: 161 DMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTA 220

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTII 465
           +I G  Q+  P EAL+L+  M K D  + +K +++S ++A A I SL +G+++   +  +
Sbjct: 221 IISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280

Query: 466 GLDSDQIISTSLVDFYCKCGFIKMDEY 492
           GLDSD+++  SL+D Y KCG I+   Y
Sbjct: 281 GLDSDEVVWCSLLDMYGKCGSIEEARY 307



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 95/195 (48%), Gaps = 16/195 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C    +  +GKQ+H + ++ G  +S    A+ L+ MY +CG+  +A  +F+ +
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVRVG-FDSFSSAASALVHMYSKCGDIENAKSVFEIL 413

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P+ + FSW +++ G+ + G  +K+L  F ++     + +  ++  ++S  A AG +    
Sbjct: 414 PQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGL 473

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ +  ++ +      +  +I    R G   EA  +  E+       ++ D +I A +
Sbjct: 474 EYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMP------IKPDKYIWAAL 527

Query: 179 IGACADLAALEYGKQ 193
           +G C     LE  K+
Sbjct: 528 LGGCRIHGNLELAKR 542


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  194 bits (493), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 125/464 (26%), Positives = 215/464 (46%), Gaps = 74/464 (15%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL--- 92
           I   T+   N +L  Y++      AL LFD MP R+  SWN M+    + G   ++L   
Sbjct: 199 IKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 258

Query: 93  ------------------------------------QLFNVMPQKNDFSWNMLISGFAKA 116
                                               Q+   +P  + +  + L+  +AK 
Sbjct: 259 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKC 318

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K A+ +FN +  RN +AW  +I  ++++G   E+V LF ++ ++L   +  D F LA
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAEL---MTLDQFALA 375

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C     L  G+Q+HS  L +G     V+ +SL+++Y KC +  SA  +   M E 
Sbjct: 376 TLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEK 435

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    +++I+ ++  G +  AR  FD  +  + + WN+M+  YI +  + + L +++ M 
Sbjct: 436 DIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVML 495

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
               V  D  T  ++   C+ LG  + G Q+ G   KVG+I D  VA             
Sbjct: 496 SEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVA------------- 542

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N +IT+YS CGRI +A+ +F  +  K ++SWN+MI G SQ+G
Sbjct: 543 ------------------NAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHG 584

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
              +A+++F ++ K   + D  S  +V+S C++   ++ G+  F
Sbjct: 585 MGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYF 628



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 212/412 (51%), Gaps = 35/412 (8%)

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
           A+++ F++ G  + + +LF  + +   F  N ++ G+ K   +  A  LF+ MP R+ ++
Sbjct: 178 ALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVS 237

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WN M+    ++G  REA+ +  ++ S  V   + D+    + + ACA L++L +GKQ+H+
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGV---RLDSTTYTSSLTACARLSSLRWGKQLHA 294

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            ++ N    D  + S+LV L                               YA CG   +
Sbjct: 295 QVIRNLPCIDPYVASALVEL-------------------------------YAKCGCFKE 323

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A+ VF+   D ++V W  +I+G++ +   TE++ LF++MR   +  D   LA+++S C S
Sbjct: 324 AKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCS 383

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
              L  G+Q+H    K G I  V+V+++L+  Y+K      A  +F  +   D +   +M
Sbjct: 384 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSM 443

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMD 435
           IT +S  G I  A+  F  M  K++I+WN+M+    Q+G+  + L ++  M ++ D+R D
Sbjct: 444 ITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPD 503

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +  ++   CA++ + +LG+Q+  R   +GL  D  ++ +++  Y KCG I
Sbjct: 504 WVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRI 555



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 217/478 (45%), Gaps = 66/478 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL-LLFDE 66
            A  L+SC    ++   + LH   +  G L S + + N LL  Y+ CG   DA  LL  +
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVG-LASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +   N  + N M+ G++KLG    +++LF  MP ++  SWN L+SG+ ++ +   +   F
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             M R    + N                                 AF  A  + +C  L 
Sbjct: 126 VSMHRSGDSSPN---------------------------------AFTFAYAMKSCGALG 152

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
                 Q+   +   G   DS + ++LV+++ +CG  + A+++   +KEP  FC ++++ 
Sbjct: 153 ERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLV 212

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GY     ++ A  +FD   +   V WN M+S    +    EAL +   M+  GV  D++T
Sbjct: 213 GYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTT 272

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             S L+AC+ L  L  GKQ+H    +     D  VASAL++ Y+K               
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAK--------------- 317

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                           CG  ++AK +F ++ +++ ++W  +I G  Q+G   E+++LF  
Sbjct: 318 ----------------CGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQ 361

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           M    + +D+F+LA++IS C +   L LG Q+ +     G     ++S SL+  Y KC
Sbjct: 362 MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 419



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 207/463 (44%), Gaps = 78/463 (16%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +A  L+ M++RCG    A  LF  +     F  N+M+ G++K    + +L+LF+ MP+++
Sbjct: 175 VAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERD 234

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDM-------------------PRRNAIAWNSMIHC 143
             SWNM++S  +++G ++ A  +  DM                    R +++ W   +H 
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHA 294

Query: 144 YV-------------------------------------RNGFA--------------RE 152
            V                                     RN  A               E
Sbjct: 295 QVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTE 354

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           +V LF ++ ++L   +  D F LAT+I  C     L  G+Q+HS  L +G     V+ +S
Sbjct: 355 SVELFNQMRAEL---MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS 411

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+++Y KC +  SA  +   M E D    +++I+ ++  G +  AR  FD  +  + + W
Sbjct: 412 LISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITW 471

Query: 273 NSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           N+M+  YI +  + + L +++ M     V  D  T  ++   C+ LG  + G Q+ G   
Sbjct: 472 NAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTV 531

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           KVG+I D  VA+A++  YSK G   +A K+F  L V D +  N MIT YS  G  + A  
Sbjct: 532 KVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIE 591

Query: 392 IF----RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           IF    +       IS+ +++ G S +G   E    F  M ++
Sbjct: 592 IFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRV 634



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 173/430 (40%), Gaps = 101/430 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C +   + +G+QLH   LK G + + + ++N L+ MY +C N   A  +F  M
Sbjct: 374 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVV-VSNSLISMYAKCDNLQSAESIFRFM 432

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SW +MI    ++G+  K+ + F+ M  KN  +W                     
Sbjct: 433 NEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITW--------------------- 471

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     N+M+  Y+++G   + +R++  + S+  + ++ D     T+   CADL A
Sbjct: 472 ----------NAMLGAYIQHGAEEDGLRMYNVMLSE--KDVRPDWVTYVTLFKGCADLGA 519

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            + G QI    +  GL  D+ + ++++ +Y KCG    A +V + +   D    +A+I+G
Sbjct: 520 NKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITG 579

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+  G    A  +FD                                + + G   D  + 
Sbjct: 580 YSQHGMGKQAIEIFD-------------------------------DILKRGAKPDYISY 608

Query: 308 ASVLSACSSLGFLEHG-------KQVH----------------GHACKVGVIDDVIVASA 344
            +VLS CS  G ++ G       K+VH                G A  +    D+I    
Sbjct: 609 VAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMP 668

Query: 345 LLDTYSKRGMPSDACKL-----FSELKVYDTILLNT--------MITVYSSCGRIEDAKH 391
           +  T    G    ACK+      +EL       L++        M  +Y+  G+ +D+  
Sbjct: 669 MKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQ 728

Query: 392 IFRTMPNKSL 401
           I + M +K +
Sbjct: 729 IRKLMRDKGI 738



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 119/248 (47%), Gaps = 25/248 (10%)

Query: 2   DTRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R D++    L + C    +  +G Q+    +K G++  T  +AN ++ MY +CG   +
Sbjct: 499 DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDT-SVANAVITMYSKCGRILE 557

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAK 115
           A  +FD +  ++  SWNAMI G+ + G  ++++++F+ + +   K D+ S+  ++SG + 
Sbjct: 558 ARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSH 617

Query: 116 AGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +G ++  ++ F+ M R + I+     ++ M+    R G   EA  L  E+       ++ 
Sbjct: 618 SGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMP------MKP 671

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSAN 227
            A +   ++ AC      E  +    H+     + DS    S   +  +Y   G  + + 
Sbjct: 672 TAEVWGALLSACKIHGNNELAELAAKHV----FELDSPDSGSYMLMAKIYADAGKSDDSA 727

Query: 228 QVLNMMKE 235
           Q+  +M++
Sbjct: 728 QIRKLMRD 735


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 136/514 (26%), Positives = 235/514 (45%), Gaps = 105/514 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC    +I +G+ +H      G L+  + + + L++MY   G   DA  +FD M  R
Sbjct: 152 VVKSCAALGAIALGRLVHRTARTLG-LDGDMFVGSALIKMYANGGLLWDARQVFDGMAER 210

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-------------------NVMPQKNDFSW----- 106
           +C  WN M++G++K G    +++LF                   +V   ++D  +     
Sbjct: 211 DCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLH 270

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+S +AK   L     LF  MPR + + WN MI   V+NGF  
Sbjct: 271 TLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVD 330

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF ++       ++ D+  L +++ A  DL     GK++H +I+ N +  D     
Sbjct: 331 QALLLFCDMQKS---GIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDV---- 383

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                      F +SAL+  Y  C  +  A+ V+D +     V+
Sbjct: 384 ---------------------------FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVI 416

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
            ++MISGY+ N    EA+ +F  +   G+  +A  +ASVL AC+S+  ++ G+++H +A 
Sbjct: 417 GSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYAL 476

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K        V SAL+D Y+K                               CGR++ + +
Sbjct: 477 KNAYEGRCYVESALMDMYAK-------------------------------CGRLDLSHY 505

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           IF  +  K  ++WNSMI   +QNG P EAL+LF  M    ++    +++SV+SACA++ +
Sbjct: 506 IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPA 565

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  G+++   V    + +D    ++L+D Y KCG
Sbjct: 566 IYYGKEIHGVVIKGPIRADLFAESALIDMYGKCG 599



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 145/528 (27%), Positives = 243/528 (46%), Gaps = 116/528 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L    T   +  G QLH   +K G L S + +AN L+ MY +C    D   LF  M
Sbjct: 250 LACFLSVSATESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGWKLFGLM 308

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKND-------- 103
           PR +  +WN MI G ++ G  +++L LF                +++P   D        
Sbjct: 309 PRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGK 368

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          F  + L+  + K   ++ A+++++     + +  ++MI  YV NG
Sbjct: 369 ELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNG 428

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            ++EAV++F+ L   L + ++ +A  +A+V+ ACA +AA++ G+++HS+ L N  +    
Sbjct: 429 MSQEAVKMFRYL---LEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE---- 481

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                    G+C                  +  SAL+  YA CG+++ +  +F + +   
Sbjct: 482 ---------GRC------------------YVESALMDMYAKCGRLDLSHYIFSKISAKD 514

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSMIS +  N E  EAL LF +M   GV     T++SVLSAC+SL  + +GK++HG
Sbjct: 515 EVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHG 574

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K  +  D+   SAL+D Y K                               CG +E 
Sbjct: 575 VVIKGPIRADLFAESALIDMYGK-------------------------------CGNLEW 603

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F +MP K+ +SWNS+I      G   E++ L  +M +   + D  +  +++SACA+
Sbjct: 604 AHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAH 663

Query: 449 ISSLELGEQVFARVTIIGLDSDQIIS-----TSLVDFYCKCGFIKMDE 491
              ++ G ++F  +T    +  QI         +VD Y + G  K+D+
Sbjct: 664 AGQVQEGLRLFRCMT----EEYQIAPRMEHFACMVDLYSRAG--KLDK 705



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/529 (23%), Positives = 225/529 (42%), Gaps = 109/529 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +   + +G Q+H   +  G+  +   +  RL+ MY+      DA+ +F  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 68  PRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVM--------PQKNDFSW---------- 106
           PR        WN +I G    G    +L  +  M        P  + F +          
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  + LI  +A  G L  AR +F+ M  R+ + WN M+  
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           YV+ G    AV LF ++ +   E    +   LA  +   A  + L +G Q+H+  +  GL
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEP---NFATLACFLSVSATESDLFFGVQLHTLAVKYGL 278

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           + +  + ++LV++Y K                               C  ++D  ++F  
Sbjct: 279 ESEVAVANTLVSMYAK-------------------------------CKCLDDGWKLFGL 307

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 V WN MISG + N    +ALLLF  M+++G+  D+ TL S+L A + L     G
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K++HG+  +  V  DV + SAL+D Y K      A  ++   K  D ++ +TMI+ Y   
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGY--- 424

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
                                  ++ G+SQ     EA+ +F  + +  +R +  ++ASV+
Sbjct: 425 -----------------------VLNGMSQ-----EAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            ACA++++++LG+++ +       +    + ++L+D Y KCG + +  Y
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHY 505


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 236/490 (48%), Gaps = 77/490 (15%)

Query: 51  YMRCGNPTDALLLFDEM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------- 100
           Y+ CG   +A+ L   +       F WNA+I   +KLG  + +L  +  M +        
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 101 -------------------------------KNDFSWNMLISGFAKAGELKTARTLFNDM 129
                                           N F  N +++ + + G L  A  +F+++
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 130 PRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             R   + ++WNS++  YV+ G +R A+R+   + +    +L+ DA  L  ++ ACA + 
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL++GKQ+H   + NGL  D  +G++LV++Y KC   N AN+V   +K+ D    +A+++
Sbjct: 249 ALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVT 308

Query: 247 GYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           GY+  G  + A  +F    +       + W+++I+GY       EAL +F +M+  G+  
Sbjct: 309 GYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEP 368

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +  TLAS+LS C+S+G L +GKQ H +     VI +++                    L 
Sbjct: 369 NVVTLASLLSGCASVGALLYGKQTHAY-----VIKNIL-------------------NLN 404

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--PNKSLISWNSMIVGLSQNGSPIEA 420
              K  D ++LN +I +Y+ C     A+ IF ++   +K++++W  MI G +Q+G   +A
Sbjct: 405 WNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDA 464

Query: 421 LDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSL 477
           L LF  +   K  L+ + F+L+  + ACA +  L LG Q+ A       +S+ + +   L
Sbjct: 465 LKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCL 524

Query: 478 VDFYCKCGFI 487
           +D Y K G I
Sbjct: 525 IDMYSKSGDI 534



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 229/512 (44%), Gaps = 111/512 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C +  ++  GKQ+H   ++ G+++    + N L+ MY +C    +A       
Sbjct: 237 LVNILPACASVFALQHGKQVHGFSVRNGLVDDVF-VGNALVSMYAKCSKMNEA------- 288

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                   N + EG  K                K+  SWN +++G+++ G   +A +LF 
Sbjct: 289 --------NKVFEGIKK----------------KDVVSWNAMVTGYSQIGSFDSALSLFK 324

Query: 128 DMPRRN----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            M   +     I W+++I  Y + G   EA+ +F+++    +  L+ +   LA+++  CA
Sbjct: 325 MMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ---LYGLEPNVVTLASLLSGCA 381

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            + AL YGKQ H++++ N L+ +                +N         KE D   L+ 
Sbjct: 382 SVGALLYGKQTHAYVIKNILNLN----------------WND--------KEDDLLVLNG 417

Query: 244 LISGYANCGKMNDARRVFD--RTTDTSSVMWNSMISGYISNNEDTEALLLFHKM--RRNG 299
           LI  YA C     AR +FD     D + V W  MI GY  + E  +AL LF ++  ++  
Sbjct: 418 LIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTS 477

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDA 358
           +  +A TL+  L AC+ LG L  G+Q+H +A +     +V+ V + L+D YSK G    A
Sbjct: 478 LKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAA 537

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--------------------- 397
             +F  +K+ + +   +++T Y   GR E+A H+F  M                      
Sbjct: 538 RAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHS 597

Query: 398 ---NKSLISWNSMIVG----------------LSQNGSPIEALDLFCNMNKLDLRMDKFS 438
              ++ +I ++ M+ G                L + G   EA++L  NM+     +   +
Sbjct: 598 GMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVA 657

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSD 470
           L S     ANI   ELGE   +++T +G ++D
Sbjct: 658 LLSASRIHANI---ELGEYAASKLTELGAEND 686



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 18/234 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     + +G+QLH + L+    +  L + N L+ MY + G+   A  +FD M  RN
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-----MLISGFAKAGELKTARTLF 126
             SW +++ G+   G  E++L LF+ M QK  F+ +     +++   + +G +      F
Sbjct: 549 VVSWTSLMTGYGMHGRGEEALHLFDQM-QKLGFAVDGITFLVVLYACSHSGMVDQGMIYF 607

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           +DM +   I      +  M+    R G   EA+ L K ++      ++  A +   ++ A
Sbjct: 608 HDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMS------MEPTAVVWVALLSA 661

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
               A +E G+   S +   G + D    + L NLY     +    ++ ++MK 
Sbjct: 662 SRIHANIELGEYAASKLTELGAENDGSY-TLLSNLYANARRWKDVARIRSLMKH 714



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLI-SWNSMIVGLSQNGSPIEALDLFCNM 427
           T + +  +  Y  CG   +A  +  R +P+ S +  WN++I    + G   + L  +C M
Sbjct: 59  TEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQM 118

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +L    D ++   V+ AC  I SL  G  V A V   GL S+  I  S+V  Y +CG
Sbjct: 119 QRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCG 176


>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 231/499 (46%), Gaps = 110/499 (22%)

Query: 31  FLKKGILNS-----TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           ++ K +LNS     ++ + N LL MY+R  +  +A  +F  M  RN FSWN ++ G+ K 
Sbjct: 122 YVFKAVLNSLVNPLSVRLGNALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKA 181

Query: 86  GHKEKSLQLFNVM------PQ-------------KNDF--------------------SW 106
           G  +++L L++ M      P               NDF                    + 
Sbjct: 182 GFFDEALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAV 241

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N LI+ + K G + +ART+F+ M +R+ I+WN+MI  Y  NG   E + LF ++   L  
Sbjct: 242 NALITMYVKCGCVGSARTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQM---LEL 298

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +  D   + +VI AC  L     G++IH +++  G              YG        
Sbjct: 299 SVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTG--------------YGN------- 337

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                     D    S LI  YA+ G   +A +VF  T     V W +MISGY  N    
Sbjct: 338 ----------DVSVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHD 387

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +AL  +  M   G++ D  T+A VLSAC+SLG L+ G ++H  A ++G++  VIVA++L+
Sbjct: 388 KALETYKNMELAGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLMSFVIVANSLI 447

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D YSK                               C  I+ A  +F  + +K++ISW S
Sbjct: 448 DMYSK-------------------------------CKCIDKALEVFHCIQDKNVISWTS 476

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           +I+GL  N    EAL  F  M K +L+ +  +L SV+SACA I +L  G+++ A      
Sbjct: 477 IILGLRINNRSFEALSFFRKM-KRNLKPNSITLISVLSACARIGALMCGKEIHAHALKTA 535

Query: 467 LDSDQIISTSLVDFYCKCG 485
           +  +  +  +++D Y +CG
Sbjct: 536 MVYEGFLPNAILDMYVRCG 554



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 211/491 (42%), Gaps = 107/491 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC   +    GK++H H ++ G   + +   N L+ MY++CG    A  +FD+M +R
Sbjct: 209 VLRSCGGANDFIRGKEIHCHVIRFG-FETDVSAVNALITMYVKCGCVGSARTVFDKMLQR 267

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
           +  SWNAMI G+ + G   + L LF  M +                              
Sbjct: 268 DRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIH 327

Query: 101 --------KNDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                    ND S  ++LI  +A  G  K A  +F++   R+ ++W +MI  Y  N    
Sbjct: 328 GYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHD 387

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+  +K +    +  +  D   +A V+ ACA L  L+ G ++H      GL    ++ +
Sbjct: 388 KALETYKNME---LAGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLMSFVIVAN 444

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC                              C  ++ A  VF    D + + 
Sbjct: 445 SLIDMYSKC-----------------------------KC--IDKALEVFHCIQDKNVIS 473

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+I G   NN   EAL  F KM+RN +  ++ TL SVLSAC+ +G L  GK++H HA 
Sbjct: 474 WTSIILGLRINNRSFEALSFFRKMKRN-LKPNSITLISVLSACARIGALMCGKEIHAHAL 532

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  ++                               Y+  L N ++ +Y  CG++  A +
Sbjct: 533 KTAMV-------------------------------YEGFLPNAILDMYVRCGKLGLALN 561

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F  +  + + +WN ++ G ++ G    A++LF  M +  +  D  +  +++ AC+    
Sbjct: 562 QF-NLYKEDVAAWNILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRSGM 620

Query: 452 LELGEQVFARV 462
           +E  +    +V
Sbjct: 621 VEEAKWTPKKV 631



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 117/264 (44%), Gaps = 32/264 (12%)

Query: 229 VLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           VLN +  P    L +AL+S Y     +N+A  VF R  + +   WN ++ GY       E
Sbjct: 127 VLNSLVNPLSVRLGNALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDE 186

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           AL L+H+M   G+  D  T   VL +C        GK++H H  + G   DV        
Sbjct: 187 ALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSA------ 240

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
                                    +N +IT+Y  CG +  A+ +F  M  +  ISWN+M
Sbjct: 241 -------------------------VNALITMYVKCGCVGSARTVFDKMLQRDRISWNAM 275

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G  +NG  +E L+LF  M +L +  D  ++ SVISAC  +    LG ++   V   G 
Sbjct: 276 ISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGY 335

Query: 468 DSDQIISTSLVDFYCKCGFIKMDE 491
            +D  + + L+  Y   G+ K  E
Sbjct: 336 GNDVSVHSLLIQMYASLGYWKEAE 359



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 155/370 (41%), Gaps = 76/370 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  ++ +C       +G+++H + ++ G  N  + + + L+QMY   G   +A
Sbjct: 300 VDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGYGND-VSVHSLLIQMYASLGYWKEA 358

Query: 61  LLLFDEMPRRNCFSWNAMIEGFM-KLGHKE-----KSLQLFNVMPQKNDFS--------- 105
             +F E   R+  SW AMI G+   L H +     K+++L  ++P +   +         
Sbjct: 359 EKVFSETECRDVVSWTAMISGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASL 418

Query: 106 ------------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                    N LI  ++K   +  A  +F+ +  +N I+W S+I
Sbjct: 419 GQLDLGMRLHELANRMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSII 478

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
                N  + EA+  F+++  +L    + ++  L +V+ ACA + AL  GK+IH+H L  
Sbjct: 479 LGLRINNRSFEALSFFRKMKRNL----KPNSITLISVLSACARIGALMCGKEIHAHALKT 534

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
            + ++  L                 N +L+M               Y  CGK+  A   F
Sbjct: 535 AMVYEGFL----------------PNAILDM---------------YVRCGKLGLALNQF 563

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           +   +  +  WN ++ GY    +   A+ LFHKM  + V  D  T  ++L ACS  G +E
Sbjct: 564 NLYKEDVAA-WNILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRSGMVE 622

Query: 322 HGKQVHGHAC 331
             K      C
Sbjct: 623 EAKWTPKKVC 632


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 198/437 (45%), Gaps = 83/437 (18%)

Query: 51  YMRCGNPTDALLLFDE--MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM 108
           Y R G    A  +FDE  +P R   SWNAM+  + +     ++L LF  MPQ+N  SWN 
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNG 91

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LISG  K G L  AR +F+ MP RN ++W SM+  YVRNG   EA RLF  +        
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHK----- 146

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
                                           N + +  +LG  L       G  + A +
Sbjct: 147 --------------------------------NVVSWTVMLGGLLQE-----GRVDDARK 169

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + +MM E D   ++ +I GY   G++++AR +FD     + V W +M+SGY         
Sbjct: 170 LFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYA-------- 221

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
                   RNG ++ A  L  V+   + + +                       +A+L  
Sbjct: 222 --------RNGKVDVARKLFEVMPERNEVSW-----------------------TAMLLG 250

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+  G   +A  LF  + V   ++ N MI  +   G ++ A+ +F+ M  +   +W++MI
Sbjct: 251 YTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMI 310

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
               + G  +EAL LF  M +  L ++  SL SV+S C +++SL+ G+QV A++     D
Sbjct: 311 KVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFD 370

Query: 469 SDQIISTSLVDFYCKCG 485
            D  +++ L+  Y KCG
Sbjct: 371 QDLYVASVLITMYVKCG 387



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 208/433 (48%), Gaps = 46/433 (10%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           F +  + + T+   N ++  Y     P +ALLLF++MP+RN  SWN +I G +K G   +
Sbjct: 45  FDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSE 104

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           + ++F+ MP +N  SW  ++ G+ + G++  A  LF  MP +N ++W  M+   ++ G  
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRV 164

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            +A +LF  +          D   +  +IG   +   L+  + +   +    +    V  
Sbjct: 165 DDARKLFDMMPEK-------DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTW 213

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND-------------- 256
           +++V+ Y + G  + A ++  +M E ++   +A++ GY + G+M +              
Sbjct: 214 TAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVV 273

Query: 257 -----------------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                            ARRVF    +  +  W++MI  Y     + EAL LF +M+R G
Sbjct: 274 VCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREG 333

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  +  +L SVLS C SL  L+HGKQVH    +     D+ VAS L+  Y K G    A 
Sbjct: 334 LALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAK 393

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL----SQNG 415
           ++F+   + D ++ N+MIT YS  G  E+A ++F  M +  +   +   +G+    S +G
Sbjct: 394 QVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSG 453

Query: 416 SPIEALDLFCNMN 428
              E L+LF  M 
Sbjct: 454 KVKEGLELFETMK 466



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 33/212 (15%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVM--WNSMISGYISNNEDTEALLLFHKMR--- 296
           S  I+ YA  G+++ AR+VFD T      +  WN+M++ Y    +  EALLLF KM    
Sbjct: 26  SYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRN 85

Query: 297 ------------RNGVLEDASTL------ASVLSACSSL-GFLEHG-----KQVHGHACK 332
                       +NG+L +A  +       +V+S  S + G++ +G     +++  H   
Sbjct: 86  TVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPH 145

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
             V+   ++   LL    + G   DA KLF  +   D + +  MI  Y   GR+++A+ +
Sbjct: 146 KNVVSWTVMLGGLL----QEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARAL 201

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           F  MP +++++W +M+ G ++NG    A  LF
Sbjct: 202 FDEMPKRNVVTWTAMVSGYARNGKVDVARKLF 233



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 16/184 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C +  S+  GKQ+H   ++    +  L +A+ L+ MY++CGN   A  +F+  
Sbjct: 341 LISVLSVCVSLASLDHGKQVHAQLVRSE-FDQDLYVASVLITMYVKCGNLVRAKQVFNRF 399

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P ++   WN+MI G+ + G  E++L +F+ M       +D ++  ++S  + +G++K   
Sbjct: 400 PLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGL 459

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF  M  +  +      +  ++    R     EA++L +++       ++ DA +   +
Sbjct: 460 ELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMP------MEPDAIVWGAL 513

Query: 179 IGAC 182
           +GAC
Sbjct: 514 LGAC 517


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 192/425 (45%), Gaps = 56/425 (13%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FDEM  RN F+WN M+ G ++     ++ ++F+ MP +N  SW  L++G+A+ G +  AR
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEAR 116

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LFN +P RN ++WN+M+  Y RNG  + A  LF                          
Sbjct: 117 ELFNRIPDRNVVSWNAMVSGYARNGMVKRARELF-------------------------- 150

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           D+                    D V   ++++ Y K      A ++ + M  P     +A
Sbjct: 151 DMMPWR----------------DDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNA 194

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+SGY   G M  A  +F +    + V WN MI+GY        A  LF +M    VL  
Sbjct: 195 LLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSR 254

Query: 304 ASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            + +          G+L++G         K     D +  + ++D + +     DA KLF
Sbjct: 255 TAIMR---------GYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLF 305

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           SE+   D I  N ++  Y   G ++ A   FR  PNK  ISWN++I G    G    AL 
Sbjct: 306 SEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALS 361

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L   M +  L+ D+ +L+ VIS CA++ SL  G+ V       G + D ++ +SL+  Y 
Sbjct: 362 LLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYS 421

Query: 483 KCGFI 487
           KCG I
Sbjct: 422 KCGLI 426



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 207/453 (45%), Gaps = 84/453 (18%)

Query: 40  TLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
            +P+ N      LL  Y RCG   +A  LF+ +P RN  SWNAM+ G+ + G  +++ +L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR----------------------- 131
           F++MP ++D SW  +ISG+ K   ++ AR LF+ MP                        
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAE 209

Query: 132 --------RNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFILATVIGAC 182
                   RN ++WN MI  Y R G    A RLF E+   D++ R    A +   +    
Sbjct: 210 VLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRT---AIMRGYLQNGS 266

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
            D A   +    H          D+V  +++++ + +    + A ++ + M + D    +
Sbjct: 267 VDAAWKVFKDMPHR---------DTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWN 317

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           A++ GY   G M+ A   F R  +  ++ WN++ISGY    +D  AL L  +M R G+  
Sbjct: 318 AILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGY----KDEGALSLLSEMIRGGLKP 373

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D +TL+ V+S C+SL  L  GK VH  A K G   D +V S+L+  YSK G+ S+A ++F
Sbjct: 374 DQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVF 433

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   DT+  N MI  Y+  G  +                               EAL 
Sbjct: 434 ELILQRDTVTWNAMIATYAYHGLAD-------------------------------EALK 462

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           +F  M K   R D  +  S++SACA+   L  G
Sbjct: 463 VFDMMTKAGFRPDHATFLSILSACAHKGYLYEG 495



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 25/241 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C +  S+  GK +HL  +K G  +  L + + L+ MY +CG  ++A  +F+ +
Sbjct: 378 LSVVISICASLVSLGCGKMVHLWAIKTGFEHDAL-VMSSLISMYSKCGLISEASQVFELI 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGEL---- 119
            +R+  +WNAMI  +   G  +++L++F++M +     +  ++  ++S  A  G L    
Sbjct: 437 LQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGC 496

Query: 120 ---KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              ++ +  +N +PR +   ++ M+    R+GF  +A         D   R+  D    A
Sbjct: 497 YHFRSMQEDWNLVPRSD--HYSCMVDLLGRSGFIHQAY--------DFTRRIPSDHRTTA 546

Query: 177 --TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             T+   C     ++ G+ I  ++L      D  + + L N+Y     ++SA  V   MK
Sbjct: 547 WETLFSVCNSHGEIQLGEIIARNVL-KARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMK 605

Query: 235 E 235
           E
Sbjct: 606 E 606


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 192/425 (45%), Gaps = 56/425 (13%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FDEM  RN F+WN M+ G ++     ++ ++F+ MP +N  SW  L++G+A+ G +  AR
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEAR 116

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LFN +P RN ++WN+M+  Y RNG  + A  LF                          
Sbjct: 117 ELFNRIPDRNVVSWNAMVSGYARNGMVKRARELF-------------------------- 150

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           D+                    D V   ++++ Y K      A ++ + M  P     +A
Sbjct: 151 DMMPWR----------------DDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNA 194

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+SGY   G M  A  +F +    + V WN MI+GY        A  LF +M    VL  
Sbjct: 195 LLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSR 254

Query: 304 ASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            + +          G+L++G         K     D +  + ++D + +     DA KLF
Sbjct: 255 TAIMR---------GYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLF 305

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           SE+   D I  N ++  Y   G ++ A   FR  PNK  ISWN++I G    G    AL 
Sbjct: 306 SEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEG----ALS 361

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L   M +  L+ D+ +L+ VIS CA++ SL  G+ V       G + D ++ +SL+  Y 
Sbjct: 362 LLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYS 421

Query: 483 KCGFI 487
           KCG I
Sbjct: 422 KCGLI 426



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 207/453 (45%), Gaps = 84/453 (18%)

Query: 40  TLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
            +P+ N      LL  Y RCG   +A  LF+ +P RN  SWNAM+ G+ + G  +++ +L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR----------------------- 131
           F++MP ++D SW  +ISG+ K   ++ AR LF+ MP                        
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAE 209

Query: 132 --------RNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFILATVIGAC 182
                   RN ++WN MI  Y R G    A RLF E+   D++ R    A +   +    
Sbjct: 210 VLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRT---AIMRGYLQNGS 266

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
            D A   +    H          D+V  +++++ + +    + A ++ + M + D    +
Sbjct: 267 VDAAWKVFKDMPHR---------DTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWN 317

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           A++ GY   G M+ A   F R  +  ++ WN++ISGY    +D  AL L  +M R G+  
Sbjct: 318 AILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGY----KDEGALSLLSEMIRGGLKP 373

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D +TL+ V+S C+SL  L  GK VH  A K G   D +V S+L+  YSK G+ S+A ++F
Sbjct: 374 DQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVF 433

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   DT+  N MI  Y+  G  +                               EAL 
Sbjct: 434 ELILQRDTVTWNAMIATYAYHGLAD-------------------------------EALK 462

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           +F  M K   R D  +  S++SACA+   L  G
Sbjct: 463 VFDMMTKAGFRPDHATFLSILSACAHKGYLYEG 495



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 25/241 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C +  S+  GK +HL  +K G  +  L + + L+ MY +CG  ++A  +F+ +
Sbjct: 378 LSVVISICASLVSLGCGKMVHLWAIKTGFEHDAL-VMSSLISMYSKCGLISEASQVFELI 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGEL---- 119
            +R+  +WNAMI  +   G  +++L++F++M +     +  ++  ++S  A  G L    
Sbjct: 437 LQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGC 496

Query: 120 ---KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              ++ +  +N +PR +   ++ M+    R+GF  +A         D   R+  D    A
Sbjct: 497 YHFRSMQEDWNLVPRSD--HYSCMVDLLGRSGFIHQAY--------DFTRRIPSDHRTTA 546

Query: 177 --TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             T+   C     ++ G+ I  ++L      D  + + L N+Y     ++SA  V   MK
Sbjct: 547 WETLFSVCNSHGEIQLGEIIARNVL-KARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMK 605

Query: 235 E 235
           E
Sbjct: 606 E 606


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 218/472 (46%), Gaps = 100/472 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G     L +   L+ MY + G   DA  +FD    R
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLG-YEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR 130

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A                               LI+G+A +G +++A+ +F+++P
Sbjct: 131 DVVSYTA-------------------------------LITGYASSGNIRSAQEMFDEIP 159

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+MI  Y   G  +EA+ LFKE+   +   ++ D   + TV+ ACA   ++E 
Sbjct: 160 VKDVVSWNAMISGYAETGSYKEALELFKEM---MKTNVRPDEGTMVTVLSACAQSRSVEL 216

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G   +  + ++L++LY KCG   +A                        
Sbjct: 217 GRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA------------------------ 252

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG       +F+  +    V WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 253 CG-------LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSI 305

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+ LG ++ G+ +H           V +   L D  +    PS              
Sbjct: 306 LPACAHLGAIDIGRWIH-----------VYIDKKLKDVTNA---PS-------------- 337

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            L  ++I +Y+ CG IE A  +F +M +KSL SWN+MI G + +G      DLF  M K 
Sbjct: 338 -LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKN 396

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
            +  D  +   ++SAC++   L+LG  +F  +T      D  I+  L  + C
Sbjct: 397 GIEPDDITFVGLLSACSHSGKLDLGRHIFKSMT-----QDYDITPKLEHYGC 443



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 179/369 (48%), Gaps = 36/369 (9%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A ++F  +   N + WN+M+  Y  +     A++L+  + S     L  +++    ++ +
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMIS---LGLLPNSYTFPFLLKS 75

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA   A E G+QIH H+L  G + D  + +SL+++Y + G    A++V +     D    
Sbjct: 76  CAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSY 135

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +ALI+GYA+ G +  A+ +FD       V WN+MISGY       EAL LF +M +  V 
Sbjct: 136 TALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVR 195

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ +VLSAC+    +E G+QVH      G   ++ + +AL+D YSK G    AC L
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGL 255

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F  L   D +  NT+I  Y+     ++A  +F+ M              L    SP    
Sbjct: 256 FEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEM--------------LRSGESP---- 297

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVD 479
                        +  ++ S++ ACA++ ++++G    V+    +  + +   + TSL+D
Sbjct: 298 -------------NDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLID 344

Query: 480 FYCKCGFIK 488
            Y KCG I+
Sbjct: 345 MYAKCGDIE 353



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 142/252 (56%), Gaps = 7/252 (2%)

Query: 238 DFC-LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           +FC LS    G+        A  VF    + + ++WN+M+ GY  +++   AL L+  M 
Sbjct: 5   EFCVLSPHFDGFPY------AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMI 58

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
             G+L ++ T   +L +C+     E G+Q+HGH  K+G   D+ V ++L+  Y++ G   
Sbjct: 59  SLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLE 118

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           DA K+F      D +    +IT Y+S G I  A+ +F  +P K ++SWN+MI G ++ GS
Sbjct: 119 DAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGS 178

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             EAL+LF  M K ++R D+ ++ +V+SACA   S+ELG QV + +   G  S+  I  +
Sbjct: 179 YKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNA 238

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG ++
Sbjct: 239 LIDLYSKCGQVE 250



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 49/295 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    S+ +G+Q+H      G   S L I N L+ +Y +CG    A  LF+ +
Sbjct: 201 MVTVLSACAQSRSVELGRQVHSWIDDHG-FGSNLKIVNALIDLYSKCGQVETACGLFEGL 259

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFS------------------ 105
             ++  SWN +I G+  +   +++L LF  M       ND +                  
Sbjct: 260 SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGR 319

Query: 106 W-------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
           W                     LI  +AK G+++ A  +FN M  ++  +WN+MI  +  
Sbjct: 320 WIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAM 379

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G A     LF  +  + +E    D      ++ AC+    L+ G+ I    +    D  
Sbjct: 380 HGRANAGFDLFSRMRKNGIEP---DDITFVGLLSACSHSGKLDLGRHIFKS-MTQDYDIT 435

Query: 207 SVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDAR 258
             L     +++L G  G F  A +++  M  EPD     +L+      G +  A 
Sbjct: 436 PKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAE 490


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 203/404 (50%), Gaps = 11/404 (2%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAR 151
           LF   P     +   L++  A AG L+ A   F+ +P  RR+ +  N+M+  + R   A 
Sbjct: 85  LFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAA 144

Query: 152 EAVRLFKELNSDLVERLQCDAFI-LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            AV +F  L      R    +F  L + +G   +LAA  +  Q+H  +L +G      + 
Sbjct: 145 PAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAA-PHCTQLHCSVLKSGAAAVLSVS 203

Query: 211 SSLVNLYGKCGDFNS---ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           ++L+ LY KC    +   A +VL+ M + DD   + ++ GY   G +N AR VF+     
Sbjct: 204 NALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGK 263

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V+WN+MISGY+ +    +A  LF +M    V  D  T  SVLSAC++ GF  HGK VH
Sbjct: 264 FDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 323

Query: 328 GHACKVG---VIDDVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           G   ++    V +  + V +AL+  YSK G    A ++F  + + D +  NT+++ Y   
Sbjct: 324 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 383

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G ++ A  +F+ MP K+ +SW  M+ G    G   +AL LF  M   D++   ++ A  I
Sbjct: 384 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 443

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +AC  + +L+ G Q+ A +   G ++      +L+  Y KCG +
Sbjct: 444 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 487



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 214/467 (45%), Gaps = 68/467 (14%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           QLH   LK G   + L ++N L+ +YM+C  P                SW+A        
Sbjct: 186 QLHCSVLKSGA-AAVLSVSNALIALYMKCDTPEA--------------SWDAR------- 223

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                  ++ + MP K+D +W  ++ G+ + G++  AR++F ++  +  + WN+MI  YV
Sbjct: 224 -------KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 276

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G   +A  LF+ + S   E++  D F   +V+ ACA+     +GK +H  I+    +F
Sbjct: 277 QSGMCADAFELFRRMVS---EKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNF 333

Query: 206 DS----VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
                  + ++LV LY K G    A ++ + M   D    + ++SGY + G ++ A  VF
Sbjct: 334 VPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVF 393

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                 + + W  M+SGY+      +AL LF++MR   V     T A  ++AC  LG L+
Sbjct: 394 KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALK 453

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
           HG+Q+H H  + G        +ALL  Y+K G  +DA                       
Sbjct: 454 HGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDA----------------------- 490

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                   + +F  MPN   +SWN+MI  L Q+G   EAL+LF  M    +  D+ S  +
Sbjct: 491 --------RLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 542

Query: 442 VISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFI 487
           +++AC +   ++ G   F  +    G+   +     L+D   + G I
Sbjct: 543 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 589



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 176/411 (42%), Gaps = 103/411 (25%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L +C N    +H GK +H   ++     +  + LP+ N L+ +Y + G    A  +FD 
Sbjct: 306 VLSACANAGFFVH-GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           M  ++  SWN ++ G++  G  +K++++F VMP KND SW +++SG+             
Sbjct: 365 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGY------------- 411

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
                             V  G + +A++LF ++ ++ V+   CD +  A  I AC +L 
Sbjct: 412 ------------------VHGGLSEDALKLFNQMRAEDVK--PCD-YTYAGAIAACGELG 450

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL++G+Q+H+H++  G +  +  G++L+ +Y KCG  N A  V  +M   D    +A+IS
Sbjct: 451 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 510

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
                G                                  EAL LF +M   G+  D  +
Sbjct: 511 ALGQHG-------------------------------HGREALELFDQMVAEGIDPDRIS 539

Query: 307 LASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
             ++L+AC+  G ++ G           G+       S   D Y++              
Sbjct: 540 FLTILTACNHAGLVDEGFHYFESMKRDFGI-------SPGEDHYAR-------------- 578

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNG 415
                     +I +    GRI +A+ + +TMP +   S W +++ G   NG
Sbjct: 579 ----------LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 619



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 22/242 (9%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C    ++  G+QLH H ++ G   S     N LL MY +CG   DA L+F
Sbjct: 436 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVF 494

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
             MP  +  SWNAMI    + GH  ++L+LF+ M  +    +  S+  +++    AG + 
Sbjct: 495 LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 554

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                F  M R   I+     +  +I    R+G   EA  L K +        +    I 
Sbjct: 555 EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP------FEPTPSIW 608

Query: 176 ATVIGACADLAALEYGKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
             ++  C     +E+G      +  ++   D   +L   L N Y   G +  A +V  +M
Sbjct: 609 EAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYIL---LSNTYSAAGRWVDAARVRKLM 665

Query: 234 KE 235
           ++
Sbjct: 666 RD 667


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 219/472 (46%), Gaps = 100/472 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G  +  L +   L+ +Y++ G   DA  +FD  P R
Sbjct: 140 LLKSCAKSKAFKEGQQIHGHVLKLG-YDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR 198

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A+I+G+   G+ E + +LF+ +P K+  SWN +ISG+A+ G  K A  LF +M 
Sbjct: 199 DVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMM 258

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           + N                                  ++ D   + TV+ ACA   ++E 
Sbjct: 259 KTN----------------------------------IRPDESTMVTVVSACAQSGSIEL 284

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G   +  + +SL++LY KCG+  +A                        
Sbjct: 285 GRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA------------------------ 320

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG       +F+       + WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 321 CG-------LFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSI 373

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+ LG ++ G+ +H       V  D  + SA           ++A  L + L     
Sbjct: 374 LPACAHLGAIDIGRWIH-------VYIDKRLKSA-----------TNASSLRTSL----- 410

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                 I +Y+ CG IE A  +F ++ +KSL SWN+MI G + +G    A D+F  M K+
Sbjct: 411 ------IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKI 464

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
            +  D  +   ++SAC+    L+LG  +F  +T      D  I+  L  + C
Sbjct: 465 GIEPDDITFVGLLSACSRSGMLDLGRHIFRTMT-----QDYKITPKLEHYGC 511



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 178/372 (47%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  +     A++L+  + S     L  +++    +
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMIS---LGLLPNSYTFPFL 140

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   A + G+QIH H+L  G D D  + +SL+++Y + G    A +V +     D 
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDV 200

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI GYA+ G +  A+++FD       V WN+MISGY       EAL LF +M + 
Sbjct: 201 VSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKT 260

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            +  D ST+ +V+SAC+  G +E G+QVH      G   ++ + ++L+D YSK G    A
Sbjct: 261 NIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I  NT+I  Y+     +                               
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYK------------------------------- 349

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
           EAL LF  M +   R +  ++ S++ ACA++ ++++G    V+    +    +   + TS
Sbjct: 350 EALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTS 409

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 410 LIDMYAKCGDIE 421


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 190/379 (50%), Gaps = 23/379 (6%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I   AK G + +AR LF++MP ++ +AWN+M+  Y + G  ++A+ LF  +    +   +
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMR---IANSR 68

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D F     + ACA L  L  G +IH+ ++V+G      +G+SL+++YGKC    SA +V
Sbjct: 69  PDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRV 128

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M   ++    +L+  Y + G  + AR VFD       + WN MISGY    +    L
Sbjct: 129 FEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCL 188

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF KMR + +  D  T +++++A   L    +G  +HG   K G  DDV+         
Sbjct: 189 GLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSG-WDDVM--------- 238

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
                     K+F  + +   +  N MI  +   G   +A  +F+  P K+++SW SMI 
Sbjct: 239 ----------KVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMIT 288

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G ++NG   +AL  F  M +  ++ D F+  +V+ AC+++++L  G+ +   +   G  +
Sbjct: 289 GYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHA 348

Query: 470 DQIISTSLVDFYCKCGFIK 488
              +   LV+ Y KCG I+
Sbjct: 349 YVDVGNGLVNMYAKCGDIQ 367



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 211/487 (43%), Gaps = 92/487 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +  G ++H   +  G   S+LP+ N L+ MY +C + T A  +F+EM    
Sbjct: 78  LSACAGLGELRRGMKIHAQVVVSGC-QSSLPVGNSLIDMYGKCLSATSARRVFEEM---- 132

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                                   ++M   N+ SW  L+  +  +G    AR +F+ MP+
Sbjct: 133 ------------------------SIM---NEVSWCSLLFAYTSSGLFDVARVVFDGMPK 165

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +  IAWN MI  Y + G     + LFK++  D    LQ D +  + ++ A  +L    YG
Sbjct: 166 KVEIAWNIMISGYGQCGDVELCLGLFKKMRED---SLQPDQWTFSALVNALCELQEPSYG 222

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H  I+ +G D        ++ ++   G     +              +A+I  +   
Sbjct: 223 YMMHGFIIKSGWD-------DVMKVFESIGILTQVS-------------WNAMIDAHMKI 262

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G  ++A  VF    + + V W SMI+GY  N    +AL  F KM  N +  D  T  +VL
Sbjct: 263 GDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVL 322

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            ACSSL  L HGK +HG     G    V V + L++ Y+K                    
Sbjct: 323 HACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAK-------------------- 362

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      CG I+ +   F+ +  K L+SWN+M+ GL  +G   +AL+L+  M    
Sbjct: 363 -----------CGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASG 411

Query: 432 LRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIK-- 488
           ++ DK +   ++  C++   +E G+ +F + V++ GL  +      +VD   + G++   
Sbjct: 412 MKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQA 471

Query: 489 ---MDEY 492
              +DEY
Sbjct: 472 RELVDEY 478



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 113/230 (49%)

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F  ++ I   A  G++  ARR+FD      +V WN+M++ Y       +AL LFH MR  
Sbjct: 6   FQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIA 65

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
               D  T  + LSAC+ LG L  G ++H      G    + V ++L+D Y K    + A
Sbjct: 66  NSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSA 125

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
            ++F E+ + + +   +++  Y+S G  + A+ +F  MP K  I+WN MI G  Q G   
Sbjct: 126 RRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVE 185

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
             L LF  M +  L+ D+++ +++++A   +     G  +   +   G D
Sbjct: 186 LCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWD 235



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 23/238 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++  ++  GK +H   +  G  ++ + + N L+ MY +CG+   +   F E+  +
Sbjct: 321 VLHACSSLATLGHGKMIHGSIIHYG-FHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGK 379

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTART 124
           +  SWNAM+ G    GH  ++L+L+  M      P K  F    L+   + +G ++  + 
Sbjct: 380 DLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFI--GLLMTCSHSGLIEKGQA 437

Query: 125 LFNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           LF  M     ++  +     M+    R G+  +A    +EL  +     + +  +   ++
Sbjct: 438 LFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQA----RELVDEYSRTGRAETSLPEALL 493

Query: 180 GACADLAALEYGKQIHSHILV--NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           GAC   + +  G  +  ++ V     +   VL   L NLY   G +  A  V   M +
Sbjct: 494 GACFAHSEVRMGANLGEYLKVFEPQKEMSYVL---LSNLYCVSGQWKEAEMVRKTMTD 548


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 234/520 (45%), Gaps = 108/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C +   +H   Q+    +K G+ N  L    +L+ ++ + G+  +A  +F+ + 
Sbjct: 53  AVLLELCTSMKELH---QIIPLVIKNGLYNEHL-FQTKLVSLFSKYGSINEAARVFEPID 108

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISG---------- 112
            +    ++ M++G+ K    E +L         +V P   +F++ + + G          
Sbjct: 109 DKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKE 168

Query: 113 -----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                  +AK  ++  A  +F+ MP R+ ++WN++I  + +NGF
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           A++A+ L   +     E  + D+  L TV+ A AD+  L  GK IH + +  G       
Sbjct: 229 AKKALELVLRMQD---EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF------ 279

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            + LVN+                         +AL   Y+ CG +  AR +FD     + 
Sbjct: 280 -AKLVNIS------------------------TALADMYSKCGSVETARLIFDGMDQKTV 314

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNSM+ GY+ N E  +A+ +F KM   G+     T+   L AC+ LG LE GK VH  
Sbjct: 315 VSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKF 374

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             ++ +  D+ V                               +N++I++YS C R++ A
Sbjct: 375 VDQLNLGSDISV-------------------------------MNSLISMYSKCKRVDIA 403

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             IF  +  ++ +SWN+MI+G +QNG   EAL+ F  M  L ++ D F++ SVI A A +
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           S     + +   +    LD +  ++T+LVD Y KCG I M
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHM 503



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 226/518 (43%), Gaps = 106/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +      +   +   ++ MY +C    DA  +FD MP R
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG-VVNMYAKCRQIDDAYKMFDRMPER 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQ----------------LFNVMPQKNDFSWNML---IS 111
           +  SWN +I GF + G  +K+L+                L  V+P   D    M+   I 
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIH 271

Query: 112 GFA--------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           G+A                    K G ++TAR +F+ M ++  ++WNSM+  YV+NG   
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ +F+++   L E +      +   + ACADL  LE GK +H  +    L  D  + +
Sbjct: 332 KAIAVFEKM---LEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC   + A+ + N +        +A+I GYA  G++                 
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRV----------------- 431

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                         +EAL  F +M+  G+  D+ T+ SV+ A + L    H K +HG   
Sbjct: 432 --------------SEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLII 477

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  ++ V +AL+D YSK                               CG I  A+ 
Sbjct: 478 RSCLDKNIFVTTALVDMYSK-------------------------------CGAIHMARK 506

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  + ++ +I+WN+MI G   +G    ALDLF  M K  +  +  +  SVISAC++   
Sbjct: 507 LFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGL 566

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
           ++ G + F  +    GL+       ++VD   + G IK
Sbjct: 567 VDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 227/488 (46%), Gaps = 73/488 (14%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           FL+    ++ +   N  +    R GN  +A  +F +M  R+  SWNAMI  + + G   K
Sbjct: 40  FLETTTTSTAIFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSK 99

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAG-ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
           + Q+F+ MP +   S+N +I+   K   +L  A  LF D+P +NA+++ +MI  +VR G 
Sbjct: 100 AWQVFDEMPVRATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGR 159

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA  L+ E                            +++   + S++L++G       
Sbjct: 160 FDEAECLYAE--------------------------TPVKFRDPVASNVLLSG------- 186

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                  Y + G +N A +V   M   +    S+++ GY   G++ DAR +FDR  + + 
Sbjct: 187 -------YLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLFDRMPERNV 239

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHG 328
           + W +MI GY       +   LF +MR+ G V  +++TLA +  AC        G Q+HG
Sbjct: 240 ITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHG 299

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              ++ +  D+ + ++L+  YSK G   +A  +F  +K  D++  N++IT      +I +
Sbjct: 300 LLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISE 359

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD----------------- 431
           A  +F  MP K ++SW  MI G S  G   + ++LF  M + D                 
Sbjct: 360 AYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYY 419

Query: 432 ----------LRM----DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
                     LR     + ++ +SV+SA A+++ L  G Q+  RV  + + +D  +  SL
Sbjct: 420 EEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSL 479

Query: 478 VDFYCKCG 485
           V  YCKCG
Sbjct: 480 VSMYCKCG 487



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 223/481 (46%), Gaps = 69/481 (14%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           ++  ++R G   +A  L+ E P   R+  + N ++ G++++G   +++++F  M  K   
Sbjct: 150 MITGFVRAGRFDEAECLYAETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVV 209

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S++ ++ G+ K G +  AR+LF+ MP RN I W +MI  Y + GF  +   LF  +  + 
Sbjct: 210 SYSSMVDGYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEG 269

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
             R+  +   LA +  AC D      G QIH  +    L+FD  LG+SL+++Y K G   
Sbjct: 270 DVRVNSNT--LAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMG 327

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT------------------- 265
            A  V  +MK  D    ++LI+G     ++++A  +F++                     
Sbjct: 328 EAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGE 387

Query: 266 ------------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                       +   + W +MIS ++SN    EAL  FHKM R  V  ++ T +SVLSA
Sbjct: 388 ISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSA 447

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +SL  L  G Q+HG   K+ + +D+ V ++L+  Y K G  +DA K+FS +   + +  
Sbjct: 448 TASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI+                               G S NG   EA+ LF  +      
Sbjct: 508 NTMIS-------------------------------GFSYNGFGKEAVKLFSMLESTGKE 536

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            +  +  +++SAC ++  ++LG + F  +    G++        +VD + + G   +DE 
Sbjct: 537 PNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGL--LDEA 594

Query: 493 Y 493
           Y
Sbjct: 595 Y 595



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 38/367 (10%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R++   LA + ++C        G Q+H   L +  L   L + N L+ MY + G   +
Sbjct: 270 DVRVNSNTLAVMFRACRDFFRYREGSQIH-GLLSRMPLEFDLFLGNSLISMYSKLGYMGE 328

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
           A  +F  M  ++  SWN++I G ++     ++ +LF  MP K+  SW  +I GF+  GE+
Sbjct: 329 AKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEI 388

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
                LF  MP ++ I W +MI  +V NG+  EA+  F ++   L +++  +++  ++V+
Sbjct: 389 SKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKM---LRKQVCPNSYTFSSVL 445

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            A A LA L  G QIH  ++   +  D  + +SLV++Y KCG+ N A ++ + + EP+  
Sbjct: 446 SATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIV 505

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
             + +ISG++                                N    EA+ LF  +   G
Sbjct: 506 SYNTMISGFS-------------------------------YNGFGKEAVKLFSMLESTG 534

Query: 300 VLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
              +  T  ++LSAC  +G+++ G K         G+       + ++D + + G+  +A
Sbjct: 535 KEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEA 594

Query: 359 CKLFSEL 365
             L S +
Sbjct: 595 YNLISTM 601


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 242/520 (46%), Gaps = 86/520 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMY---MRCGNPTDALLLFDEM 67
           LL+ C + + +   KQ+H H +K G+  S+ P+  + +  +      G    A  +FD +
Sbjct: 13  LLEKCKSMYQL---KQIHSHTIKMGL--SSDPLFQKRVIAFCCAHESGKMIYARQVFDAI 67

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKAGELKT 121
           P+   F WN MI+G+ ++ H +  + ++      N+ P +  F++  L+ GF +   L+ 
Sbjct: 68  PQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDR--FTFPFLLKGFTRNMALQY 125

Query: 122 ARTLFN---------------------------DMPRR--------NAIAWNSMIHCYVR 146
            + L N                           D+ R+          + WN M+  Y R
Sbjct: 126 GKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNR 185

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
               +++  LF E+    V     ++  L  ++ AC+ L  LE GK I+ +I    ++ +
Sbjct: 186 VKQFKKSKMLFIEMEKRGVSP---NSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERN 242

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            +L + L++++  CG+ + A  V + MK  D    +++++G+AN G+++ AR+ FD+  +
Sbjct: 243 LILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPE 302

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W +MI GY+  N   EAL LF +M+ + V  D  T+ S+L+AC+ LG LE G+ V
Sbjct: 303 RDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV 362

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
             +  K  + +D  V +AL+D Y K G    A K+F E                      
Sbjct: 363 KTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKE---------------------- 400

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                    M +K   +W +MIVGL+ NG   EAL +F NM +  +  D+ +   V+ AC
Sbjct: 401 ---------MHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCAC 451

Query: 447 ANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCG 485
            +   +E G+  F  +T+  G+  +      +VD   + G
Sbjct: 452 THAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAG 491



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 147/341 (43%), Gaps = 65/341 (19%)

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
            RN    N +I+ F   G  +++  +F+ M  ++  SW  +++GFA  G++  AR  F+ 
Sbjct: 240 ERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQ 299

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           +P R+ ++W +MI  Y+R     EA+ LF+E+    +  ++ D F + +++ ACA L AL
Sbjct: 300 IPERDYVSWTAMIDGYLRMNRFIEALALFREMQ---MSNVKPDEFTMVSILTACAHLGAL 356

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
           E G+ + ++I  N +  D+ +G++L+++Y K                             
Sbjct: 357 ELGEWVKTYIDKNSIKNDTFVGNALIDMYFK----------------------------- 387

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG +  A++VF          W +MI G   N    EAL +F  M    +  D  T  
Sbjct: 388 --CGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYI 445

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            VL AC+  G +E G+                  S  +    + G+  +           
Sbjct: 446 GVLCACTHAGMVEKGQ------------------SFFISMTMQHGIKPNVTHY------- 480

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMI 408
                  M+ +    GR+E+A  +   MP K + I W S++
Sbjct: 481 -----GCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 32/181 (17%)

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           S+L  C S+  L   KQ+H H  K+G+  D +        + KR +              
Sbjct: 12  SLLEKCKSMYQL---KQIHSHTIKMGLSSDPL--------FQKRVIA------------- 47

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                          G++  A+ +F  +P  +L  WN+MI G S+   P   + ++  M 
Sbjct: 48  --------FCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLML 99

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             +++ D+F+   ++       +L+ G+ +       G DS+  +  + +  +  C  + 
Sbjct: 100 ASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVD 159

Query: 489 M 489
           +
Sbjct: 160 L 160


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/528 (25%), Positives = 228/528 (43%), Gaps = 105/528 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C    S+ +G+QLH   LK G  + T  + N L+ +Y   GN   A  +F  M
Sbjct: 251 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY-VCNALVSLYFHLGNLISAEHIFSNM 309

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND------------------ 103
            +R+  ++N +I G  + G+ EK+++LF  M      P  N                   
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 369

Query: 104 ----------FSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                     F+ N  I G     +AK  +++TA   F +    N + WN M+  Y    
Sbjct: 370 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 429

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             R + R+F+++    +E +  + +   +++  C  L  LE G+QIHS I+      ++ 
Sbjct: 430 DLRNSFRIFRQMQ---IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAY 486

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S L+++Y K                                GK++ A  +  R     
Sbjct: 487 VCSVLIDMYAKL-------------------------------GKLDTAWDILIRFAGKD 515

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W +MI+GY   N D +AL  F +M   G+  D   L + +SAC+ L  L+ G+Q+H 
Sbjct: 516 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 575

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            AC  G   D+   +AL+  YS+                               CG+IE+
Sbjct: 576 QACVSGFSSDLPFQNALVTLYSR-------------------------------CGKIEE 604

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +   F        I+WN+++ G  Q+G+  EAL +F  MN+  +  + F+  S + A + 
Sbjct: 605 SYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASE 664

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            ++++ G+QV A +T  G DS+  +  +L+  Y KCG I   E   ++
Sbjct: 665 TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 712



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 148/598 (24%), Positives = 250/598 (41%), Gaps = 148/598 (24%)

Query: 8   LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  LL+ C  T+ S+  G++LH   LK G L+S   ++ +L   Y+  G+   A  +FDE
Sbjct: 47  LKWLLEGCLKTNGSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 105

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW-------------- 106
           MP R  F+WN MI+         +   LF      NV P +  FS               
Sbjct: 106 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDV 165

Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N LI  +++ G +  AR +F+ +  ++  +W +MI    +
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 225

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           N    EA+RLF ++    V  +    +  ++V+ AC  + +LE G+Q+H  +L  G   D
Sbjct: 226 NECEAEAIRLFCDM---YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 282

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           + + ++LV+LY   G+  SA  + + M + D    + LI+G + CG              
Sbjct: 283 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY------------- 329

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
                               +A+ LF +M  +G+  D++TLAS++ ACS+ G L  G+Q+
Sbjct: 330 ------------------GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQL 371

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H +  K+G   +  +  ALL+ Y+K      A   F E +V + +L N M+  Y     +
Sbjct: 372 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDL 431

Query: 387 EDAKHIFRTM------PN--------KSLISWNSMIVGLSQNGSPIEA------------ 420
            ++  IFR M      PN        K+ I    + +G   +   I+             
Sbjct: 432 RNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVL 491

Query: 421 LDLFCNMNKLD--------------------------------------------LRMDK 436
           +D++  + KLD                                            +R D+
Sbjct: 492 IDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDE 551

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
             L + +SACA + +L+ G+Q+ A+  + G  SD     +LV  Y +CG  K++E YL
Sbjct: 552 VGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG--KIEESYL 607



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 132/529 (24%), Positives = 215/529 (40%), Gaps = 106/529 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +C+   ++  G+QLH +  K G  ++   I   LL +Y +C +   AL  F E 
Sbjct: 352 LASLVVACSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLET 410

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
              N   WN M+  +  L     S ++F  M                             
Sbjct: 411 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 470

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      Q N +  ++LI  +AK G+L TA  +      ++ ++W +MI  Y +  
Sbjct: 471 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 530

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  +A+  F+++   L   ++ D   L   + ACA L AL+ G+QIH+   V+G   D  
Sbjct: 531 FDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 587

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             ++LV LY +CG    +       +  D+   +AL+SG+   G                
Sbjct: 588 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG---------------- 631

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                        NNE  EAL +F +M R G+  +  T  S + A S    ++ GKQVH 
Sbjct: 632 -------------NNE--EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHA 676

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V +AL+  Y+K G  SDA K F E+   + +  N +I  YS       
Sbjct: 677 VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS------- 729

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            KH F +                       EALD F  M   ++R +  +L  V+SAC++
Sbjct: 730 -KHGFGS-----------------------EALDSFDQMIHSNVRPNHVTLVGVLSACSH 765

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           I  ++ G   F  + +  GL         +VD   + G +   + ++ +
Sbjct: 766 IGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQE 814



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 34/218 (15%)

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGFLEHGKQVHGHACK 332
           + IS YIS +E  +   +   +   G+  +  TL  +L  C  + G L+ G+++H    K
Sbjct: 15  AAISVYISEDESFQEKRI-DSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK 73

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  +  ++  L D Y  +G       L+   KV+D                       
Sbjct: 74  LGLDSNGCLSEKLFDFYLFKG------DLYGAFKVFD----------------------- 104

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-S 451
              MP +++ +WN MI  L+      E   LF  M   ++  ++ + + V+ AC   S +
Sbjct: 105 --EMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVA 162

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            ++ EQ+ AR+   GL    ++   L+D Y + GF+ +
Sbjct: 163 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL 200



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 17/221 (7%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ+H    K G  +S   + N L+ MY +CG+ +DA   F E+  +N  SWNA+I  + 
Sbjct: 671 GKQVHAVITKTG-YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 729

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----GELKTARTLFNDMPRRNAIA--- 136
           K G   ++L  F+ M   N    ++ + G   A    G +      F  M     ++   
Sbjct: 730 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 789

Query: 137 --WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
             +  ++    R G    A    +E+       ++ DA +  T++ AC     +E G + 
Sbjct: 790 EHYVCVVDMLTRAGLLSRAKEFIQEM------PIKPDALVWRTLLSACVVHKNMEIG-EF 842

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            +H L+     DS     L NLY     +++ +     MKE
Sbjct: 843 AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKE 883


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 232/470 (49%), Gaps = 45/470 (9%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIEG 81
           VGK      L  G+    +     ++  Y++ GN  +A  LFD +  R+N  +W AM+ G
Sbjct: 59  VGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSG 118

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           +++      +  LF  MP++N  SWN +I G+A++G +  A  LF++MP RN ++WN+MI
Sbjct: 119 YLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMI 178

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              V+ G   EA+ LF        ER+     I  T   A  D  A + GK   +  L +
Sbjct: 179 KALVQRGRIDEAMNLF--------ERMPIKDVISWT---AMVDGLA-KNGKVDEARRLFD 226

Query: 202 GLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            +   +++  ++++  Y      + A+Q+  +M E D    + +I+G+    ++N A  +
Sbjct: 227 CMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREINRACGL 286

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGF 319
           FDR    + + W +MI+GY+ N E+ EAL +F KM R+G V  +  T  S+LSACS L  
Sbjct: 287 FDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAG 346

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G+Q+H    K    ++ +V SAL++ YSK G      +L +  K++D  L+      
Sbjct: 347 LVEGQQIHQLISKSVHQENEVVTSALINMYSKSG------ELIAARKMFDNGLV------ 394

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              C R               LISWNSMI   + +G   EA++++  M K   +  + + 
Sbjct: 395 ---CQR--------------DLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTY 437

Query: 440 ASVISACANISSLELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +++ AC++   +E G + F   V    L   +   T LVD   + G +K
Sbjct: 438 LNLLFACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLK 487



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 185/407 (45%), Gaps = 61/407 (14%)

Query: 89  EKSLQLFNVM---------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           E+S+QL N++         P+     W  LI    K G+L  AR LF+ +P R+ + W  
Sbjct: 25  ERSVQLRNLVRSIYSSSSKPRVPRPEW--LIGKLCKVGKLAEARKLFDGLPERDVVTWTD 82

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  Y++ G  REA  LF  ++S                                     
Sbjct: 83  VITGYIKLGNMREARELFDRVDSRK----------------------------------- 107

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
                 + V  +++V+ Y +    + A  +   M E +    + +I GYA  G+++ A  
Sbjct: 108 ------NVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALE 161

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FD   + ++V WN+MI   +      EA+ LF +M     ++D  +  +++   +  G 
Sbjct: 162 LFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERM----PIKDVISWTAMVDGLAKNGK 217

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           ++  +++     +     ++I  +A++  Y+      +A +LF  +   D    NTMIT 
Sbjct: 218 VDEARRLFDCMPE----RNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITG 273

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFS 438
           +     I  A  +F  MP K++ISW +MI G  +N    EAL +F  M +   ++ +  +
Sbjct: 274 FIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGT 333

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             S++SAC++++ L  G+Q+   ++      +++++++L++ Y K G
Sbjct: 334 YVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSG 380


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/511 (26%), Positives = 228/511 (44%), Gaps = 102/511 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C +      G   H   +  G  + +  IA  L+  Y + G+   A  +FD M  R
Sbjct: 54  LVKACTSLDLFSHGLSFHQRVIVDGYSSDSY-IATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISG-------------- 112
           N   W  MI  + + G  + +  ++N+M     Q +  +   L+SG              
Sbjct: 113 NVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACV 172

Query: 113 ------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                             + K G ++ A+ LF  M  R+ I+WNS++  Y + G  RE +
Sbjct: 173 IQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVL 232

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           +L   + +D +E    D     +++ A A  + L  GK +H HIL  GL+ DS + +SL+
Sbjct: 233 QLLIRMKTDGIEP---DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLI 289

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            +Y K                               CG +N A R+F+       + W +
Sbjct: 290 GMYLK-------------------------------CGNVNSAFRIFEGMMHKDVISWTA 318

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MISG + N+    A+ +F +M ++ V+   +T+ASVL+AC+ LG    G  VHG+     
Sbjct: 319 MISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGY----- 373

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                     +L    K  +PS                 N+++T+Y+ CG +E +  +F 
Sbjct: 374 ----------ILRQRIKLDIPSQ----------------NSLVTMYAKCGHLEQSCSVFD 407

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            M  + ++SWN+++ G +QNG   +AL LF  M K   R D  ++ S++ ACA+I +L  
Sbjct: 408 RMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQ 467

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G+ +   VT   L    +I T+LVD Y KCG
Sbjct: 468 GKWIHNFVTKSCLGPCILIDTALVDMYSKCG 498



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 219/507 (43%), Gaps = 108/507 (21%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   ++ G   S + +AN +L +Y +CG   DA  LF+ M  R+  SWN+++ G+ +LG
Sbjct: 168 LHACVIQYG-FGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLG 226

Query: 87  HKEKSLQLF------NVMPQKNDFS---------------------------------WN 107
           +  + LQL        + P +  F                                    
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIET 286

Query: 108 MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
            LI  + K G + +A  +F  M  ++ I+W +MI   V+N  A  AV +F+ +   L  R
Sbjct: 287 SLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRM---LKSR 343

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           +      +A+V+ ACA+L +   G  +H +IL   +  D    +SLV +Y K        
Sbjct: 344 VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAK-------- 395

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                  CG +  +  VFDR +    V WN+++SG+  N    +
Sbjct: 396 -----------------------CGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCK 432

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           ALLLF++MR+     D+ T+ S+L AC+S+G L  GK +H    K  +   +++ +AL+D
Sbjct: 433 ALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVD 492

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            YSK                               CG +  A+  F  MP + L+SW+S+
Sbjct: 493 MYSK-------------------------------CGDLGSAQKCFDRMPQQDLVSWSSI 521

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IG 466
           I G   +G    AL ++ +     ++ +     S++SAC++   ++ G   F  +T   G
Sbjct: 522 IAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFG 581

Query: 467 LDSDQIISTSLVDFYCKCGFIKMDEYY 493
           ++        +VD   + G  +++E Y
Sbjct: 582 IEPRLEHRACIVDLLSRAG--RVEEAY 606



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 151/385 (39%), Gaps = 98/385 (25%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           DA    +++ AC  L    +G   H  ++V+G   DS + +SL+N Y K G   SA +V 
Sbjct: 47  DAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVF 106

Query: 231 -------------------------------NMMK----EPDDFCLSALISG-------- 247
                                          N+M+    +P    +  L+SG        
Sbjct: 107 DTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQ 166

Query: 248 ------------------------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                   Y  CG++ DA+ +F+       + WNS++SGY    
Sbjct: 167 CLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLG 226

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              E L L  +M+ +G+  D  T  S++SA +    L  GK VHGH  + G+  D  + +
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIET 286

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +L+  Y K                               CG +  A  IF  M +K +IS
Sbjct: 287 SLIGMYLK-------------------------------CGNVNSAFRIFEGMMHKDVIS 315

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W +MI GL QN     A+ +F  M K  +     ++ASV++ACA + S  LG  V   + 
Sbjct: 316 WTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYIL 375

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
              +  D     SLV  Y KCG ++
Sbjct: 376 RQRIKLDIPSQNSLVTMYAKCGHLE 400



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 16/199 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ+C +  ++H GK +H +F+ K  L   + I   L+ MY +CG+   A   FD MP++
Sbjct: 455 LLQACASIGALHQGKWIH-NFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQ 513

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW+++I G+   G  E +L+++    +   Q N   +  ++S  +  G +    + F
Sbjct: 514 DLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFF 573

Query: 127 NDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M +   I         ++    R G   EA   +K     +  +   D  +L  ++ A
Sbjct: 574 HSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKR----MFPKPSMD--VLGILLDA 627

Query: 182 CADLAALEYGKQIHSHILV 200
           C     +E G  +   I++
Sbjct: 628 CRTTGNVELGDIVAREIVI 646



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 34/217 (15%)

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           +N++I+   +     + LL +  M       DA T  S++ AC+SL    HG   H    
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G   D  +A++L++ YSK G    A K+F                             
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFD---------------------------- 107

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
              TM +++++ W +MI   ++ G    A  ++  M +  ++    ++  ++S    +  
Sbjct: 108 ---TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVH 164

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           L+    + A V   G  SD  ++ S+++ YCKCG ++
Sbjct: 165 LQC---LHACVIQYGFGSDVALANSMLNVYCKCGRVE 198



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           N +  S+N++I  LS  G+  + L  + +M   D   D  +  S++ AC ++     G  
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCG 485
              RV + G  SD  I+TSL++FY K G
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFG 97


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 237/476 (49%), Gaps = 12/476 (2%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE---MPRRNCFSWNAMIEGFM 83
           LH H ++ G+   T  +A+ LL  Y       +    F +       + F+++ M+   +
Sbjct: 105 LHAHAVRSGVAADT-SVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVHEHV 163

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           K G    +  LF+ MP+++  S+  ++    K G +  A  L+   P  +   + + I  
Sbjct: 164 KAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISG 223

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG---KQIHSHILV 200
           +VRN     A+ +F+++ S  V   + +      +I AC  + A E+G     + S I  
Sbjct: 224 FVRNELHHNALGVFRKMVSCGV---RPNGITFVCMIKAC--VGAGEFGLAMSIVGSAIKS 278

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           N  +    + +SL+ LY + GD  +A +V + M   D    +AL+  Y+  G ++ ARRV
Sbjct: 279 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRV 338

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
            D   + + V W ++I+ +       EA+ L+ +M  +G   + S  +SVLSAC++L  L
Sbjct: 339 LDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDL 398

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G ++H  + K+G   +V V+S+L+D Y K     DA  +F  L   + +  N++ + Y
Sbjct: 399 RGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGY 458

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           S  G++ +A ++F+ MP ++L SWN++I G +QN   ++AL  F  M        + + +
Sbjct: 459 SYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFS 518

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           SV+ ACAN+ SL  G+   A+   +G++    I T+L D Y K G ++  +    Q
Sbjct: 519 SVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQ 574



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 215/421 (51%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  ++++G    + ++F+ M  K+  SW  L+  ++++G+L  AR + + MP RN +
Sbjct: 289 NSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEV 348

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W ++I  + + G A EAV+L+ ++   L +  + +    ++V+ ACA L  L  G +IH
Sbjct: 349 SWGTLIARHEQRGNAAEAVKLYSQM---LADGCRPNISCFSSVLSACATLEDLRGGARIH 405

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L  G   +  + SSL+++Y KC     A  + + + E +  C ++L SGY+  GKM 
Sbjct: 406 ARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMV 465

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F +    +   WN++ISGY  N +  +AL  F+ M  +G +    T +SVL AC+
Sbjct: 466 EAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACA 525

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +L  L  GK  H    K+G+ + + + +AL D Y+K                        
Sbjct: 526 NLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKS----------------------- 562

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF +M    +  +
Sbjct: 563 --------GDLQSSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPN 614

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F ++   G+   +   T +VD   + G +   E  LM
Sbjct: 615 EHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLM 674

Query: 496 Q 496
           +
Sbjct: 675 K 675



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 175/433 (40%), Gaps = 103/433 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C T   +  G ++H   LK G  ++ + +++ L+ MY +C    DA  +F
Sbjct: 382 ISCFSSVLSACATLEDLRGGARIHARSLKMGS-STNVFVSSSLIDMYCKCKKCRDAQTIF 440

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
           D                                +P+KN   WN L SG++  G++  A  
Sbjct: 441 D-------------------------------TLPEKNIVCWNSLASGYSYNGKMVEAMY 469

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RN  +WN++I  Y +N   R+ V   +  N+ L           ++V+ ACA+
Sbjct: 470 LFKKMPARNLASWNTIISGYAQN---RQFVDALRSFNAMLASGQVPGEITFSSVLLACAN 526

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +L  GK  H+  +  G++    +G++L ++Y K GD                      
Sbjct: 527 LCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGD---------------------- 564

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                    +  ++R+F +  + + V W +MI G   N    E++LLF  M   G+  + 
Sbjct: 565 ---------LQSSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNE 615

Query: 305 STLASVLSACSSLGFLEHG--------------KQVHGHACKVGVI---DDVIVASALL- 346
            T  ++L ACS  G +E                K+ H + C V V+     +I A ALL 
Sbjct: 616 HTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKH-YTCMVDVLARAGRLIEAEALLM 674

Query: 347 ------------------DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                             +TY    +   A K   EL   +T     +  +Y+SCGR +D
Sbjct: 675 KTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKD 734

Query: 389 AKHIFRTMPNKSL 401
           A  I   M   +L
Sbjct: 735 AARIRVLMKGTTL 747


>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 446

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 214/468 (45%), Gaps = 121/468 (25%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF-- 82
           +Q+H       I+NS L   N LL   +   +   A LLF +MP  N +++N MI G   
Sbjct: 49  QQIHAQM----IINS-LSKPNFLLPRIIDLKDFAYASLLFTQMPNPNDYAFNVMIRGLTT 103

Query: 83  --------MKLGHKEKSLQLFNVMPQKNDFSWNML------------------------- 109
                   ++L ++ KSL L     + N+F++  L                         
Sbjct: 104 TWRNYSLAIQLYYQMKSLGL-----KPNNFTFPFLFISCANLVALHCGQIAHSLVLKMGF 158

Query: 110 ----------ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
                     I+ +AK  +L +AR +F+++  R+ ++WNSMI  Y + GFAREAVRLF E
Sbjct: 159 NNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFME 218

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +     E ++     L +++GAC DL  L  GK + + I    ++ +S            
Sbjct: 219 MREQGFEPVE---MTLVSILGACGDLGDLALGKWVEALIGDKKMELNS------------ 263

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                              +  SALI  Y  CG +  ARRVFD   +   V WN+MI+GY
Sbjct: 264 -------------------YTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGY 304

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             N    EA+ LF+ MR  G+  +  T+  VLSAC+S+G L+ GK V  +A + G+  DV
Sbjct: 305 AQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDV 364

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            VASAL+D Y+K                               CG +++A  +F  MP+K
Sbjct: 365 YVASALVDMYAK-------------------------------CGSLDNALRVFENMPHK 393

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISAC 446
           + +SWN+MI  L+ +G   EAL LF  M N   +R +  +   V +AC
Sbjct: 394 NEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPNDITFIGVFAAC 441



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 171/382 (44%), Gaps = 70/382 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV---RNGFAREAVRLFKELNSD 163
           N L+       +   A  LF  MP  N  A+N MI       RN     A++L+ ++ S 
Sbjct: 64  NFLLPRIIDLKDFAYASLLFTQMPNPNDYAFNVMIRGLTTTWRN--YSLAIQLYYQMKS- 120

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               L+ + F    +  +CA+L AL  G+  HS +L  G + DS +  SL+ +Y K    
Sbjct: 121 --LGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAK---- 174

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      C K++ AR+VFD   +   V WNSMISGY    
Sbjct: 175 ---------------------------CSKLDSARKVFDEILERDIVSWNSMISGYTKMG 207

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EA+ LF +MR  G      TL S+L AC  LG L  GK V        +  +   AS
Sbjct: 208 FAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTAS 267

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+D Y K                               CG +  A+ +F  M  K +++
Sbjct: 268 ALIDMYGK-------------------------------CGDLMSARRVFDNMAEKDIVT 296

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+MI G +QNG+  EA+ LF  M +  +  ++ ++  V+SACA+I +L+LG+ V    +
Sbjct: 297 WNAMITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYAS 356

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
             GL  D  ++++LVD Y KCG
Sbjct: 357 QRGLQHDVYVASALVDMYAKCG 378


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 226/499 (45%), Gaps = 115/499 (23%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  D L  LL+ C +  S+   +Q+H   +   I        N LL  ++   +  +A L
Sbjct: 29  TLTDKLLSLLKQCTSTKSL---QQIHTQMIINAIHK-----PNFLLHRFIDLKDFNNASL 80

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHK-----EKSLQLFNVMPQKNDFSW----------- 106
           LF ++P  N +++N MI G      K     E   Q+ +   + N+F++           
Sbjct: 81  LFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLL 140

Query: 107 ------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                   + LI+ +++ GEL  AR +F+++  ++ ++WNSMI 
Sbjct: 141 VLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMIS 200

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y R G+A +AV LF E+        + D   L +++GAC DL  L  G  I   ++ N 
Sbjct: 201 GYSRMGYAGDAVGLFGEMRD---AGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENE 257

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           +D +S +GS+L+ +                               Y  CG ++ ARRVFD
Sbjct: 258 MDLNSFVGSALIGM-------------------------------YGKCGDLSSARRVFD 286

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           R      V WN+MI+GY  N    EA++LF  MR +GV  D  TL  VLSAC+S+G L+ 
Sbjct: 287 RMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDF 346

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK +  +A + G+ +D+ V++AL+D Y+K G   DA ++F ++   + +  N MI+    
Sbjct: 347 GKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMIS---- 402

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLA 440
                                       L+ +G P E+L LF  M+K    +R +  S  
Sbjct: 403 ---------------------------ALAFHGRPQESLSLFKRMSKEGGAVRPNDISFI 435

Query: 441 SVISACANISSLELGEQVF 459
            V+SAC +   ++ G Q+F
Sbjct: 436 GVLSACVHAGLVDEGRQLF 454



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 169/383 (44%), Gaps = 72/383 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH----CYVRNGFAREAVRLFKELNS 162
           N L+  F    +   A  LF+ +P  N  A+N MI      + +     E     K+   
Sbjct: 63  NFLLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFG- 121

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                ++ + F    V  ACA+L  L +G+  HS +L +GL  D  +  SL+ +Y +   
Sbjct: 122 -----IRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSR--- 173

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                       CG++  ARRVFD  ++   V WNSMISGY   
Sbjct: 174 ----------------------------CGELGCARRVFDEISEKDLVSWNSMISGYSRM 205

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               +A+ LF +MR  G   D  TL S+L AC  LG L  G  + G   +  +  +  V 
Sbjct: 206 GYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVG 265

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           SAL+  Y K                               CG +  A+ +F  M  K ++
Sbjct: 266 SALIGMYGK-------------------------------CGDLSSARRVFDRMVKKDVV 294

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +WN+MI G +QNG   EA+ LF  M +  +  DK +L  V+SACA+I +L+ G+ +    
Sbjct: 295 TWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYA 354

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
           +  GL +D  +ST+L+D Y KCG
Sbjct: 355 SERGLQNDIYVSTALIDMYAKCG 377



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 134/308 (43%), Gaps = 83/308 (26%)

Query: 35  GILNSTL----PIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           G+L S L     + + L+ MY RCG    A  +FDE+  ++  SWN+MI G+ ++G+   
Sbjct: 151 GVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGD 210

Query: 91  SLQLFNVM------PQK---------------------------------NDFSWNMLIS 111
           ++ LF  M      P +                                 N F  + LI 
Sbjct: 211 AVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIG 270

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
            + K G+L +AR +F+ M +++ + WN+MI  Y +NG + EA+ LF  +    V     D
Sbjct: 271 MYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNP---D 327

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
              L  V+ ACA + AL++GK + ++    GL  D  + ++L+++Y KCG  + A +V  
Sbjct: 328 KITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFE 387

Query: 232 MMKEPDDFCLSALISGYA-------------------------------------NCGKM 254
            M + ++   +A+IS  A                                     + G +
Sbjct: 388 DMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLV 447

Query: 255 NDARRVFD 262
           ++ R++FD
Sbjct: 448 DEGRQLFD 455



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 132/311 (42%), Gaps = 68/311 (21%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           L +++  C    +L+   QIH+ +++N +   + L    ++L     DFN+A+ + + + 
Sbjct: 34  LLSLLKQCTSTKSLQ---QIHTQMIINAIHKPNFLLHRFIDLK----DFNNASLLFSQIP 86

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
            P+++  + +I G      +    + F+ T +                         +++
Sbjct: 87  YPNEYAFNIMIRG------LTTTWQKFNLTIE------------------------FYYQ 116

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+  G+  +  T   V  AC++L  L HG+  H    K G+  D  V  +L         
Sbjct: 117 MKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSL--------- 167

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                 IT+YS CG +  A+ +F  +  K L+SWNSMI G S+ 
Sbjct: 168 ----------------------ITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRM 205

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G   +A+ LF  M       D+ +L S++ AC ++  L LG  +   V    +D +  + 
Sbjct: 206 GYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVG 265

Query: 475 TSLVDFYCKCG 485
           ++L+  Y KCG
Sbjct: 266 SALIGMYGKCG 276


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 228/511 (44%), Gaps = 102/511 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C +      G   H   +  G  +S   IA  L+  Y + G+   A  +FD M  R
Sbjct: 54  LVKACTSLDLFSHGLSFHQRVIVDG-YSSDSYIATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISG-------------- 112
           N   W  MI  + + G  + +  ++N+M     Q +  +   L+SG              
Sbjct: 113 NVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACV 172

Query: 113 ------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                             + K G ++ A+ LF  M  R+ I+WNS++  Y + G  RE +
Sbjct: 173 IQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVL 232

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           +L   + +D +E    D     +++ A A  + L  GK +H HIL  GL+ DS + +SL+
Sbjct: 233 QLLIRMKTDGIEP---DQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLI 289

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            +Y K                               CG +N A R+F+       + W +
Sbjct: 290 GMYLK-------------------------------CGNVNSAFRIFEGMMHKDVISWTA 318

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MISG + N+    A+ +F +M ++ V+   +T+ASVL+AC+ LG    G  VHG+     
Sbjct: 319 MISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGY----- 373

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                     +L    K  +PS                 N+++T+Y+ CG +E +  +F 
Sbjct: 374 ----------ILRQRIKLDIPSQ----------------NSLVTMYAKCGHLEQSCSVFD 407

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            M  + ++SWN+++ G +QNG   +AL LF  M K   R D  ++ S++ ACA+I +L  
Sbjct: 408 RMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQ 467

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G+ +   VT   L    +I T+LVD Y KCG
Sbjct: 468 GKWIHNFVTKSCLGPCILIDTALVDMYSKCG 498



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 219/507 (43%), Gaps = 108/507 (21%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   ++ G   S + +AN +L +Y +CG   DA  LF+ M  R+  SWN+++ G+ +LG
Sbjct: 168 LHACVIQYG-FGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLG 226

Query: 87  HKEKSLQLF------NVMPQKNDFS---------------------------------WN 107
           +  + LQL        + P +  F                                    
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIET 286

Query: 108 MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
            LI  + K G + +A  +F  M  ++ I+W +MI   V+N  A  AV +F+ +   L  R
Sbjct: 287 SLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRM---LKSR 343

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           +      +A+V+ ACA+L +   G  +H +IL   +  D    +SLV +Y K        
Sbjct: 344 VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAK-------- 395

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                  CG +  +  VFDR +    V WN+++SG+  N    +
Sbjct: 396 -----------------------CGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCK 432

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           ALLLF++MR+     D+ T+ S+L AC+S+G L  GK +H    K  +   +++ +AL+D
Sbjct: 433 ALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVD 492

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            YSK                               CG +  A+  F  MP + L+SW+S+
Sbjct: 493 MYSK-------------------------------CGDLGSAQKCFDRMPQQDLVSWSSI 521

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IG 466
           I G   +G    AL ++ +     ++ +     S++SAC++   ++ G   F  +T   G
Sbjct: 522 IAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFG 581

Query: 467 LDSDQIISTSLVDFYCKCGFIKMDEYY 493
           ++        +VD   + G  +++E Y
Sbjct: 582 IEPRLEHRACIVDLLSRAG--RVEEAY 606



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 151/385 (39%), Gaps = 98/385 (25%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           DA    +++ AC  L    +G   H  ++V+G   DS + +SL+N Y K G   SA +V 
Sbjct: 47  DAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVF 106

Query: 231 -------------------------------NMMK----EPDDFCLSALISG-------- 247
                                          N+M+    +P    +  L+SG        
Sbjct: 107 DTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQ 166

Query: 248 ------------------------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                   Y  CG++ DA+ +F+       + WNS++SGY    
Sbjct: 167 CLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLG 226

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              E L L  +M+ +G+  D  T  S++SA +    L  GK VHGH  + G+  D  + +
Sbjct: 227 NIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIET 286

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +L+  Y K                               CG +  A  IF  M +K +IS
Sbjct: 287 SLIGMYLK-------------------------------CGNVNSAFRIFEGMMHKDVIS 315

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W +MI GL QN     A+ +F  M K  +     ++ASV++ACA + S  LG  V   + 
Sbjct: 316 WTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYIL 375

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
              +  D     SLV  Y KCG ++
Sbjct: 376 RQRIKLDIPSQNSLVTMYAKCGHLE 400



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 16/199 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ+C +  ++H GK +H +F+ K  L   + I   L+ MY +CG+   A   FD MP++
Sbjct: 455 LLQACASIGALHQGKWIH-NFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQ 513

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW+++I G+   G  E +L+++    +   Q N   +  ++S  +  G +    + F
Sbjct: 514 DLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFF 573

Query: 127 NDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M +   I         ++    R G   EA   +K     +  +   D  +L  ++ A
Sbjct: 574 HSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKR----MFPKPSMD--VLGILLDA 627

Query: 182 CADLAALEYGKQIHSHILV 200
           C     +E G  +   I++
Sbjct: 628 CRTTGNVELGDIVAREIVI 646



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 34/217 (15%)

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           +N++I+   +     + LL +  M       DA T  S++ AC+SL    HG   H    
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G   D  +A++L++ YSK G    A K+F                             
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFD---------------------------- 107

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
              TM +++++ W +MI   ++ G    A  ++  M +  ++    ++  ++S    +  
Sbjct: 108 ---TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVH 164

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           L+    + A V   G  SD  ++ S+++ YCKCG ++
Sbjct: 165 LQC---LHACVIQYGFGSDVALANSMLNVYCKCGRVE 198



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%)

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           N +  S+N++I  LS  G+  + L  + +M   D   D  +  S++ AC ++     G  
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCG 485
              RV + G  SD  I+TSL++FY K G
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFG 97


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 234/520 (45%), Gaps = 108/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C +   +H   Q+    +K G+ N  L    +L+ ++ + G+  +A  +F+ + 
Sbjct: 53  AVLLELCTSMKELH---QIIPLVIKNGLYNEHL-FQTKLVSLFSKYGSINEAARVFEPID 108

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISG---------- 112
            +    ++ M++G+ K    E +L         +V P   +F++ + + G          
Sbjct: 109 DKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKE 168

Query: 113 -----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                  +AK  ++  A  +F+ MP R+ ++WN++I  + +NGF
Sbjct: 169 IHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF 228

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           A++A+ L   +     E  + D+  L TV+ A AD+  L  GK IH + +  G       
Sbjct: 229 AKKALELVLRMQD---EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF------ 279

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            + LVN+                         +AL   Y+ CG +  AR +FD     + 
Sbjct: 280 -AKLVNIS------------------------TALADMYSKCGSVETARLIFDGMDQKTV 314

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WNSM+ GY+ N E  +A+ +F KM   G+     T+   L AC+ LG LE GK VH  
Sbjct: 315 VSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKF 374

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             ++ +  D+ V                               +N++I++YS C R++ A
Sbjct: 375 VDQLNLGSDISV-------------------------------MNSLISMYSKCKRVDIA 403

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             IF  +  ++ +SWN+MI+G +QNG   EAL+ F  M  L ++ D F++ SVI A A +
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           S     + +   +    LD +  ++T+LVD Y KCG I M
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHM 503



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 226/518 (43%), Gaps = 106/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C  +  +  GK++H   +      +   +   ++ MY +C    DA  +FD MP R
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTG-VVNMYAKCRQIDDAYKMFDRMPER 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQ----------------LFNVMPQKNDFSWNML---IS 111
           +  SWN +I GF + G  +K+L+                L  V+P   D    M+   I 
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIH 271

Query: 112 GFA--------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           G+A                    K G ++TAR +F+ M ++  ++WNSM+  YV+NG   
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ +F+++   L E +      +   + ACADL  LE GK +H  +    L  D  + +
Sbjct: 332 KAIAVFEKM---LEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC   + A+ + N +        +A+I GYA  G++                 
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRV----------------- 431

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                         +EAL  F +M+  G+  D+ T+ SV+ A + L    H K +HG   
Sbjct: 432 --------------SEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLII 477

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  +  ++ V +AL+D YSK                               CG I  A+ 
Sbjct: 478 RSCLDKNIFVTTALVDMYSK-------------------------------CGAIHMARK 506

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  + ++ +I+WN+MI G   +G    ALDLF  M K  +  +  +  SVISAC++   
Sbjct: 507 LFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGL 566

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
           ++ G + F  +    GL+       ++VD   + G IK
Sbjct: 567 VDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIK 604


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 189/379 (49%), Gaps = 64/379 (16%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N LI  + K G +  AR +F+++P R+ +AWNSMI  Y+RNG ++EA+ +++ +  D   
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPD--- 170

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +  D F  ++V  A +DL  +  G++ H   +V G+   +V                  
Sbjct: 171 GILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNV------------------ 212

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                       F  SAL+  YA  GKM DAR V D+      V++ ++I GY  + ED 
Sbjct: 213 ------------FVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDG 260

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           E+L +F  M + G+  +  TL+SVL  C +L  L  G+ +HG   K G+   V   ++LL
Sbjct: 261 ESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLL 320

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                          T+Y  CG ++D+  +F+   N + ++W S
Sbjct: 321 -------------------------------TMYYRCGLVDDSLKVFKQFINPNQVTWTS 349

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           +IVGL QNG    AL  F  M +  +  + F+L+SV+ AC++++ LE G+Q+ A V   G
Sbjct: 350 VIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFG 409

Query: 467 LDSDQIISTSLVDFYCKCG 485
           LD D+ +  +L+DFY KCG
Sbjct: 410 LDIDKYVGAALIDFYGKCG 428



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 233/529 (44%), Gaps = 113/529 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+Q C    SI    ++  H LK+G  +S   + N+L+  Y++CG+   A  +FDE+P R
Sbjct: 83  LIQQCIGIKSITDITKIQSHALKRGFHHS---LGNKLIDAYLKCGSVVYARKVFDEVPHR 139

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQK----------------------- 101
           +  +WN+MI  +++ G  ++++ ++       ++P +                       
Sbjct: 140 HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAH 199

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      N F  + L+  +AK G+++ AR + + +  ++ + + ++I  Y  +G  
Sbjct: 200 GQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGED 259

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            E++++F+ +    +E    + + L++V+  C +L  L  G+ IH  I+  GL+      
Sbjct: 260 GESLQVFRNMTKKGIE---ANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQ 316

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SL+ +Y +C                               G ++D+ +VF +  + + V
Sbjct: 317 TSLLTMYYRC-------------------------------GLVDDSLKVFKQFINPNQV 345

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W S+I G + N  +  ALL F +M R+ +  ++ TL+SVL ACSSL  LE GKQ+H   
Sbjct: 346 TWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIV 405

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  D  V +AL+D Y K G    A  +F+ L   D + +N+MI  Y          
Sbjct: 406 MKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSY---------- 455

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                                +QNG   EAL LF  M    L  +  +   V+SAC N  
Sbjct: 456 ---------------------AQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAG 494

Query: 451 SLELGEQVFARVTIIG---LDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            LE G  +F+     G   L  D      +VD   + G +K  E  + Q
Sbjct: 495 LLEEGCHIFSSARNSGNIELTKDHY--ACMVDLLGRAGRLKEAEMLINQ 541



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 110/240 (45%), Gaps = 24/240 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C++   +  GKQ+H   +K G L+    +   L+  Y +CG+   A  +F+ +
Sbjct: 382 LSSVLRACSSLAMLEQGKQIHAIVMKFG-LDIDKYVGAALIDFYGKCGSTEIARSVFNGL 440

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  S N+MI  + + G   ++LQLF+ M     + N+ +W  ++S    AG L+   
Sbjct: 441 LEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGC 500

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F+       I      +  M+    R G  +EA  L  ++N         D  I  T+
Sbjct: 501 HIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNIS-------DVVIWRTL 553

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
           + AC     +E  K++ + +    +D     G +   L NLY   G+++   ++ + M+E
Sbjct: 554 LSACRIHGDVEMAKRVMNRV----IDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMRE 609


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/582 (24%), Positives = 243/582 (41%), Gaps = 159/582 (27%)

Query: 29  LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
           +HF+ +    + LP +N+ L+  ++ G+  +A  +FD+M +++  SW  +I G++     
Sbjct: 41  IHFISQ----TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDS 96

Query: 89  EKSLQLFNVMPQKN--------------------DFSWNMLISGFA-------------- 114
            ++L LF  M  ++                    D ++  L+ G+A              
Sbjct: 97  SEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSA 156

Query: 115 ------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
                 K G++   R +F++MP RN ++W ++I   VR G+ +EA+  F E+      R+
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEM---WRSRV 213

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS--- 225
           + D++  A  + ACAD  AL YG++IH+  +  G D  S + ++L  +Y KCG       
Sbjct: 214 EYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLT 273

Query: 226 ----------------------------ANQVLNMMKE----PDDFCLSALISG------ 247
                                       A Q    M+E    P+++  +A+ISG      
Sbjct: 274 LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLAR 333

Query: 248 -----------------------------YANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                                        YA CG++  +  +F   T    V W+++I+G
Sbjct: 334 IEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAG 393

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y      +EA  L   MR  G       LASVLSAC ++  LEHGKQ+H +   +G+   
Sbjct: 394 YXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHT 453

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
            +V SAL++ Y K G   +A +                               IF    N
Sbjct: 454 AMVLSALINMYCKCGSIEEASR-------------------------------IFDAAEN 482

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
             ++SW +MI G +++G   E +DLF  + ++ LR D  +   V+SAC++   ++LG   
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHY 542

Query: 459 FARVTIIGLDSDQIISTS------LVDFYCKCGFIKMDEYYL 494
           F       +     IS S      ++D  C+ G +   E+ +
Sbjct: 543 FN-----AMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI 579



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 205/450 (45%), Gaps = 109/450 (24%)

Query: 3   TRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +R++Y     A  L++C    +++ G+++H   +KKG   S+  +AN L  MY +CG   
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF-VANTLATMYNKCGKLE 269

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG-- 112
             L LF++M  R+  SW  +I   +++G +E ++Q F  M +     N++++  +ISG  
Sbjct: 270 YGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCA 329

Query: 113 ---------------------------------FAKAGELKTARTLFNDMPRRNAIAWNS 139
                                            +AK G+L ++  +F++M RR+ ++W++
Sbjct: 330 NLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWST 389

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  Y + G   EA  L   +    +E  +   F LA+V+ AC ++A LE+GKQ+H+++L
Sbjct: 390 IIAGYXQGGHVSEAFELLSWMR---MEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL 446

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             GL+  +++                               LSALI+ Y  CG + +A R
Sbjct: 447 SIGLEHTAMV-------------------------------LSALINMYCKCGSIEEASR 475

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FD   +   V W +MI+GY  +    E + LF K+ R G+  D+ T   VLSACS  G 
Sbjct: 476 IFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGL 535

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           ++ G                       +  SK+   S + + +             MI +
Sbjct: 536 VDLGFH-------------------YFNAMSKKYQISPSKEHY-----------GCMIDL 565

Query: 380 YSSCGRIEDAKHIFRTMP-NKSLISWNSMI 408
               GR+ DA+H+   MP ++  + W++++
Sbjct: 566 LCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 237/476 (49%), Gaps = 12/476 (2%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC---FSWNAMIEGFM 83
           LH H ++ G+  +   +A+ LL  Y       +    F +    +    F+++ M+   +
Sbjct: 102 LHAHAVRSGV-AADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFMVSEHV 160

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           K G    + +LF+ MP +   S+  ++    K G +  A  L+   P  +   + + I  
Sbjct: 161 KAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATISG 220

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG---KQIHSHILV 200
           +VRN     A+ +F+++   L  R++ +   +  +I AC  + A E+G     +   I  
Sbjct: 221 FVRNELHHNALGVFRKM---LSCRVRPNGITIVCMIKAC--VGAGEFGLALSIVGLAIKS 275

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           N  +    + +SL+ LY + GD  +A +V + M   D    +AL+  Y+  G ++ ARRV
Sbjct: 276 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRV 335

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
            D   + + V W ++I+ +       EA+ L+ +M  +G   + S  +SVLSAC+SL  L
Sbjct: 336 LDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDL 395

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G ++H  + K+G   +V V+ +L+D Y K     DA  +F  L   + +  N++++ Y
Sbjct: 396 RGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGY 455

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           S  G++ +A ++F+ MP ++L SWN++I G +QN   ++AL  F  M        + + +
Sbjct: 456 SYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFS 515

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           SV+ ACAN+ SL  G+   A+   +G++    I T+L D Y K G ++  +    Q
Sbjct: 516 SVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQ 571



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 216/421 (51%), Gaps = 34/421 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N++I  ++++G    + ++F+ M  K+  SW  L+  ++++G+L  AR + + MP RN +
Sbjct: 286 NSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNEV 345

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W ++I  + + G A EAV+L+ ++   L +  + +    ++V+ ACA L  L  G +IH
Sbjct: 346 SWGTLIARHEQRGNAAEAVKLYSQM---LADGCRPNISCFSSVLSACASLEDLRGGARIH 402

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +  L  G   +  +  SL+++Y KC     A  + + + + +  C ++L+SGY+  GKM 
Sbjct: 403 ARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMV 462

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A  +F +    +   WN++ISGY  N +  +AL  F+ M  +G +    T +SVL AC+
Sbjct: 463 EAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACA 522

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +L  L  GK  H    K+G+ + + + +AL D Y+K                        
Sbjct: 523 NLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKS----------------------- 559

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                   G ++ +K +F  MP ++ ++W +MI GL++NG   E++ LF +M    +  +
Sbjct: 560 --------GDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPN 611

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +  +++ AC++   +E     F ++  +G+   +   T +VD   + G +   E  LM
Sbjct: 612 EHTFLALLFACSHGGLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLAEAEALLM 671

Query: 496 Q 496
           +
Sbjct: 672 K 672



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 174/433 (40%), Gaps = 103/433 (23%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I   + +L +C +   +  G ++H   LK G  ++ + ++  L+ MY +C    DA  +F
Sbjct: 379 ISCFSSVLSACASLEDLRGGARIHARSLKMGS-STNVFVSCSLIDMYCKCNKCGDAQTIF 437

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
           D                                +PQKN   WN L+SG++  G++  A  
Sbjct: 438 D-------------------------------TLPQKNIVCWNSLVSGYSYNGKMVEAMY 466

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF  MP RN  +WN++I  Y +N   R+ V   K  N+ L           ++V+ ACA+
Sbjct: 467 LFKKMPARNLASWNTIISGYAQN---RQFVDALKSFNAMLASGQVPGEITFSSVLLACAN 523

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +L  GK  H+  +  G++    +G++L ++Y K GD  S                   
Sbjct: 524 LCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQS------------------- 564

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                       ++R+F +  + + V W +MI G   N    E++LLF  M   G+  + 
Sbjct: 565 ------------SKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNE 612

Query: 305 STLASVLSACSSLGFLEHG--------------KQVHGHACKVGVI---DDVIVASALL- 346
            T  ++L ACS  G +E                K+ H + C V V+     +  A ALL 
Sbjct: 613 HTFLALLFACSHGGLVEQAIHYFDKMQALGISPKEKH-YTCMVDVLARAGRLAEAEALLM 671

Query: 347 ------------------DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                             +TY    +   A K   EL   +T     +  +Y+SCGR +D
Sbjct: 672 KTPSKSEANSWAALLSACNTYRNEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKD 731

Query: 389 AKHIFRTMPNKSL 401
           A  I   M   +L
Sbjct: 732 AARIRVLMKGTTL 744


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 234/523 (44%), Gaps = 111/523 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKK------GILNSTLPIANRLLQMYMRCGNPTDALL 62
           A L+ +C+   S+  G+++H H +          L     + N L+ MY RC  P  A  
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQ 107

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----------------- 105
           +FDEMP RN  SW ++I   ++ G    +L LF+ M +    +                 
Sbjct: 108 VFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGD 167

Query: 106 ----------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N L++ ++K G +     LF  +  ++ I+W S+I  
Sbjct: 168 VGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAG 227

Query: 144 YVRNGFAREAVRLFKELNSDLVE-RLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
           + + GF  EA+++F+E+   +VE     + F   +   AC  + + EYG+QIH   +   
Sbjct: 228 FAQQGFEMEALQVFREM---IVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR 284

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           LD D  +G SL ++Y +C + +SA      ++ PD      L+S                
Sbjct: 285 LDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPD------LVS---------------- 322

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                    WNS+++ Y      +EAL+LF +MR +G+  D  T+  +L AC     L H
Sbjct: 323 ---------WNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH 373

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+ +H +  K+G+  DV V ++LL  Y++    S A  +F E+K                
Sbjct: 374 GRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK---------------- 417

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                          ++ +++WNS++   +Q+  P E L LF  +NK +  +D+ SL +V
Sbjct: 418 ---------------DQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNV 462

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +SA A +   E+ +QV A     GL  D+++S +L+D Y KCG
Sbjct: 463 LSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCG 505



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 216/489 (44%), Gaps = 107/489 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     +  G+Q+H H LK     S L + N L+ MY + G   D  +LF+ +
Sbjct: 155 LGSAVRACTELGDVGTGRQVHAHALKSE-RGSDLIVQNALVTMYSKNGLVDDGFMLFERI 213

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDF-------------SWNM- 108
             ++  SW ++I GF + G + ++LQ+F  M        N+F             SW   
Sbjct: 214 KDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYG 273

Query: 109 ---------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                L   +A+   L +AR  F  +   + ++WNS+++ Y   
Sbjct: 274 EQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVE 333

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ LF E+       L+ D   +  ++ AC    AL +G+ IHS+++  GLD   
Sbjct: 334 GLLSEALVLFSEMRD---SGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLD--- 387

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                        GD +  N +L+M               YA C  ++ A  VF    D 
Sbjct: 388 -------------GDVSVCNSLLSM---------------YARCSDLSSAMDVFHEIKDQ 419

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V WNS+++    +N   E L LF  + ++    D  +L +VLSA + LG+ E  KQVH
Sbjct: 420 DVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVH 479

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +A K G++DD ++++ L+DTY+K                               CG ++
Sbjct: 480 AYAFKAGLVDDRMLSNTLIDTYAK-------------------------------CGSLD 508

Query: 388 DAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           DA  +F  M  N+ + SW+S+IVG +Q G   EA DLF  M  L +R +  +   V++AC
Sbjct: 509 DAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTAC 568

Query: 447 ANISSLELG 455
           + +  +  G
Sbjct: 569 SRVGFVNEG 577



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 24/180 (13%)

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A+++SACS L  L  G++VH H          +VAS+           S   +L      
Sbjct: 48  AALVSACSRLRSLPQGRRVHRH----------LVASS---------SSSPDAQLAG---- 84

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            +T+L N +IT+Y  C   + A+ +F  MP ++ +SW S+I    QNG   +AL LF +M
Sbjct: 85  -NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSM 143

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +     D+F+L S + AC  +  +  G QV A        SD I+  +LV  Y K G +
Sbjct: 144 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV 203



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 141/335 (42%), Gaps = 49/335 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    +++ G+ +H + +K G L+  + + N LL MY RC + + A+ +F E+  +
Sbjct: 361 LLCACVGRDALYHGRLIHSYLVKLG-LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQ 419

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKNDFSW-------- 106
           +  +WN+++    +  H E+ L+LF                NV+    +  +        
Sbjct: 420 DVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVH 479

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPR-RNAIAWNSMIHCYVRNGFA 150
                          N LI  +AK G L  A  LF  M   R+  +W+S+I  Y + G+A
Sbjct: 480 AYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYA 539

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVL 209
           +EA  LF  + S L  R     FI   V+ AC+ +  +  G   +S +    G+      
Sbjct: 540 KEAFDLFSRMRS-LGIRPNHVTFI--GVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREH 596

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTD-- 266
            S +V+L  + G    A   ++ M  EPD      L++       M   +R  +   +  
Sbjct: 597 CSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNID 656

Query: 267 -TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + S  +  + + Y ++    E   L   MR +GV
Sbjct: 657 PSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGV 691


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 225/481 (46%), Gaps = 84/481 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCG--NPTD---ALLLFDEMPRRNCFSWNAMI 79
           KQLH H L+ G+     P A +L   +  C   +P+    A  +FD++PR N ++WN +I
Sbjct: 47  KQLHAHMLRTGLFFDP-PSATKL---FTACALSSPSSLDYACKVFDQIPRPNLYTWNTLI 102

Query: 80  EGFMKLGHKEKSLQLFNVM-------PQKNDFSW-------------------------- 106
             F       + L +F  M       P    F +                          
Sbjct: 103 RAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASF 162

Query: 107 -------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
                  N LI  ++  G+L +A  +F+ +  ++ ++WNSMI  +V+ G   EA++LFK 
Sbjct: 163 GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKR 222

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +    +E  + +   +  V+ ACA    LE+G+    +I  NG+D + +L ++++++Y K
Sbjct: 223 MK---MENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVK 279

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
           CG    A ++ + M+E D    + +I GYA  G  + ARRVFD         WN++IS Y
Sbjct: 280 CGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSY 339

Query: 280 ISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
             N +  EAL +F +++ N     +  TLAS L+AC+ LG ++ G  +H +  K G+  +
Sbjct: 340 QQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLN 399

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
             + ++L+D YSK                               CG +E A  +F ++  
Sbjct: 400 FHITTSLIDMYSK-------------------------------CGHLEKALEVFYSVER 428

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           + +  W++MI GL+ +G    A+DLF  M +  ++ +  +  +++ AC++   ++ G   
Sbjct: 429 RDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488

Query: 459 F 459
           F
Sbjct: 489 F 489



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 188/379 (49%), Gaps = 36/379 (9%)

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
             +    L  A  +F+ +PR N   WN++I  +  +    + + +F ++  +  +R   +
Sbjct: 73  ALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHE-SQRFP-N 130

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           ++    VI A  ++++L  G+ IH  ++      D  + +SL++ Y   GD         
Sbjct: 131 SYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGD--------- 181

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
                                 ++ A  VF +  +   V WNSMISG++      EAL L
Sbjct: 182 ----------------------LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQL 219

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M+      +  T+  VLSAC+    LE G+    +  + G+  ++I+++A+LD Y K
Sbjct: 220 FKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVK 279

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G   DA +LF +++  D +   TMI  Y+  G  + A+ +F  MP + + +WN++I   
Sbjct: 280 CGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSY 339

Query: 412 SQNGSPIEALDLF--CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
            QNG P EAL +F    +NK + + ++ +LAS ++ACA + +++LG  +   +   G+  
Sbjct: 340 QQNGKPKEALAIFRELQLNK-NTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL 398

Query: 470 DQIISTSLVDFYCKCGFIK 488
           +  I+TSL+D Y KCG ++
Sbjct: 399 NFHITTSLIDMYSKCGHLE 417



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 157/338 (46%), Gaps = 65/338 (19%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           ++++  ++  L ++N +L MY++CG+  DA  LFD+M  ++  SW  MI+G+ K+G  + 
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           + ++F+VMP+++  +WN LIS + +                               NG  
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQ-------------------------------NGKP 345

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           +EA+ +F+EL   L +  + +   LA+ + ACA L A++ G  IH +I   G+  +  + 
Sbjct: 346 KEALAIFRELQ--LNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHIT 403

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SL+++Y KCG    A +V   ++  D F  SA+I+G A  G     R   D        
Sbjct: 404 TSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGH---GRAAID-------- 452

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
                               LF KM+   V  +A T  ++L ACS  G ++ G+      
Sbjct: 453 --------------------LFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQM 492

Query: 331 CKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             V GV+      + ++D   + G   +A +L  ++ +
Sbjct: 493 RPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPI 530



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 117/257 (45%), Gaps = 29/257 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           LA  L +C    ++ +G  +H++  K+GI LN    I   L+ MY +CG+   AL +F  
Sbjct: 368 LASTLAACAQLGAMDLGGWIHVYIKKQGIKLN--FHITTSLIDMYSKCGHLEKALEVFYS 425

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTA 122
           + RR+ F W+AMI G    GH   ++ LF+ M +     N  ++  L+   + +G +   
Sbjct: 426 VERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEG 485

Query: 123 RTLFNDM-PRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           R  FN M P    +  +    C V    R G   EAV L +++       +   A +   
Sbjct: 486 RLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMP------IVPSASVWGA 539

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMK 234
           ++GAC     +E  +   S +    L+ DS    + V   N+Y K G ++  +++   MK
Sbjct: 540 LLGACRIYGNVELAEMACSRL----LETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMK 595

Query: 235 ----EPDDFCLSALISG 247
               E +  C S  ++G
Sbjct: 596 VSGLEKEPGCSSIEVNG 612



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 35/194 (18%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           + ST+  ++  C++    +H KQ+H H  + G+  D                P  A KLF
Sbjct: 29  NPSTVPILIDKCANK---KHLKQLHAHMLRTGLFFD----------------PPSATKLF 69

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           +   +             SS   ++ A  +F  +P  +L +WN++I   + +  PI+ L 
Sbjct: 70  TACAL-------------SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLL 116

Query: 423 LFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +F  M     R  + ++   VI A   +SSL  G+ +   V      SD  IS SL+ FY
Sbjct: 117 VFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFY 176

Query: 482 CKCGFIKMDEYYLM 495
              G   +D  YL+
Sbjct: 177 SSLG--DLDSAYLV 188


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/486 (28%), Positives = 214/486 (44%), Gaps = 105/486 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           + + L+ MY + G   +A  +FD MP RN  SW  MI G+       ++L LF +M ++ 
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREE 204

Query: 102 ---NDFSW-----------------------------------NMLISGFAKAGELKTAR 123
              N+F +                                   N L++ +AK G L  A 
Sbjct: 205 EGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDAL 264

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
             F     +N+I W++MI  Y ++G + +A++LF  ++   +  ++   F    VI AC+
Sbjct: 265 QTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMH---LSGIRPSEFTFVGVINACS 321

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           DL A   GKQ+H ++L   L F+S +                             + ++A
Sbjct: 322 DLGAAWEGKQVHDYLL--KLGFESQI-----------------------------YVMTA 350

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+  YA C  + DAR+ FD   +   V+W SMI GY+ N E+ +AL L+ +M   G+L +
Sbjct: 351 LVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPN 410

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T+ASVL ACSSL  LE GKQ+H    K G   +V + SAL   Y+K G   D   +F 
Sbjct: 411 ELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFR 470

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +   D I  N MI+                               GLSQNG   EAL+L
Sbjct: 471 RMPARDVISWNAMIS-------------------------------GLSQNGCGKEALEL 499

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYC 482
           F  M     + D  +  +++SAC+++  +E G   F  +    G+D        +VD   
Sbjct: 500 FEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILS 559

Query: 483 KCGFIK 488
           + G +K
Sbjct: 560 RAGKLK 565



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 225/524 (42%), Gaps = 111/524 (21%)

Query: 7   YLARLLQSCNTHH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           +   LLQ   TH+ S+  GK LH   +K    +S + IAN L+ +Y +C    +A  +F+
Sbjct: 9   FFTALLQ--YTHNRSLQKGKALHAQIIKSS--SSCVYIANSLVNLYAKCQRLREAKFVFE 64

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKS--LQLFNVMPQKND-------------------- 103
            +  ++  SWN +I G+ + G    S  ++LF  M  +N                     
Sbjct: 65  RIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDA 124

Query: 104 -------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                              F  + L++ + KAG    AR +F+ MP RN+++W +MI  Y
Sbjct: 125 AGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGY 184

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
                A EA+ LF+ +     E    + F+  +V+ A      +  GKQIH   + NGL 
Sbjct: 185 ASQKLAAEALGLFRLMRR---EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLL 241

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
               +G++LV +Y KCG  + A Q      + +    SA+I+GYA  G            
Sbjct: 242 SIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSG------------ 289

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                              +  +AL LF  M  +G+     T   V++ACS LG    GK
Sbjct: 290 -------------------DSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGK 330

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           QVH +  K+G    + V +AL+D Y+K     DA K F  L+  D +L  +MI       
Sbjct: 331 QVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIG------ 384

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                    G  QNG   +AL L+  M    +  ++ ++ASV+ 
Sbjct: 385 -------------------------GYVQNGENEDALSLYGRMEMEGILPNELTMASVLK 419

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           AC+++++LE G+Q+ AR    G   +  I ++L   Y KCG +K
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLK 463



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 191/448 (42%), Gaps = 110/448 (24%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ+H   +K G+L S + + N L+ MY +CG+  DAL  F+    +N  +W+AMI G+ 
Sbjct: 228 GKQIHCIAVKNGLL-SIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYA 286

Query: 84  KLGHKEKSLQLFNVM------PQKNDF------------SW------------------- 106
           + G  +K+L+LF+ M      P +  F            +W                   
Sbjct: 287 QSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIY 346

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
               L+  +AK   +  AR  F+ +   + + W SMI  YV+NG   +A+ L+  +    
Sbjct: 347 VMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRME--- 403

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +E +  +   +A+V+ AC+ LAALE GKQIH+  +  G   +  +GS+L  +Y K     
Sbjct: 404 MEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAK----- 458

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                     CG + D   VF R      + WN+MISG   N  
Sbjct: 459 --------------------------CGCLKDGTLVFRRMPARDVISWNAMISGLSQNGC 492

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG--------------KQVHGHA 330
             EAL LF +M+  G   D  T  ++LSACS +G +E G               +V  +A
Sbjct: 493 GKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYA 552

Query: 331 C------KVGVIDDVI--VASALLD--------------TYSKRGMPSDACKLFSELKVY 368
           C      + G + + I    SA +D               Y    + + A +   EL   
Sbjct: 553 CMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQ 612

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTM 396
           ++     + ++YS+ GR ED + + R M
Sbjct: 613 ESSAYVLLSSIYSALGRWEDVERVRRMM 640



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 112/238 (47%), Gaps = 21/238 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C++  ++  GKQ+H   +K G     +PI + L  MY +CG   D  L+F  M
Sbjct: 414 MASVLKACSSLAALEQGKQIHARTVKYG-FGLEVPIGSALSTMYAKCGCLKDGTLVFRRM 472

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDF-SWNMLISGFAKAGELKTA- 122
           P R+  SWNAMI G  + G  +++L+LF  M     K D+ ++  ++S  +  G ++   
Sbjct: 473 PARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGW 532

Query: 123 ---RTLFNDM---PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              R +F++    PR    A   M+    R G  +EA+  F E  S  ++   C   +  
Sbjct: 533 GYFRMMFDEFGMDPRVEHYA--CMVDILSRAGKLKEAIE-FTE--SATIDHGMC---LWR 584

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
            ++GAC +    E G      ++  G    S     L ++Y   G +    +V  MMK
Sbjct: 585 IILGACRNYRNYELGAYAGEKLMELGSQESSAY-VLLSSIYSALGRWEDVERVRRMMK 641


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 225/481 (46%), Gaps = 108/481 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + +SC +  +I VGKQ+H   ++ G  +S++   N L+  Y +  +   A L+FD     
Sbjct: 102 IFKSCASLLAIDVGKQVHSLVIRYG-FHSSVFCQNALINFYAKINDLGSAELIFD----- 155

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                     G +                 K+  ++N LIS ++++GE+  AR LF+ M 
Sbjct: 156 ----------GILV----------------KDTIAYNCLISAYSRSGEVLAARELFDKMR 189

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++WN+MI CY +NG   +   +F+ +  ++ E    +   LATV+  CA L  LE 
Sbjct: 190 DRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEP---NEITLATVLSICAKLGDLEM 246

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G +I        L+ +  LGS+++                           +A++  Y  
Sbjct: 247 GLRIKK------LNDNKNLGSNMI-------------------------VSTAMLEMYVK 275

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG ++D R VFD       V W++MI+GY  N    EAL LF  M+   +  +  TL SV
Sbjct: 276 CGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV 335

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSAC+ LG +E G+++  +    G+I +V VASALL  YSK                   
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSK------------------- 376

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG I  A+ IF  +P +  ++WNSMI+GL+ NG   +A+ L+  M ++
Sbjct: 377 ------------CGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEI 424

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKC 484
           +++ +  +   +++AC +   +ELG + F       + SD  IS +      +VD +C+ 
Sbjct: 425 EVKPNNITFVGLMTACTHAGHVELGLEFFR-----SMRSDHNISPNIEHFACIVDLFCRS 479

Query: 485 G 485
           G
Sbjct: 480 G 480



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 34/380 (8%)

Query: 108 MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
           + I     A  ++ AR +F+ +P  +     S I  Y R     EA+R F  ++ + V R
Sbjct: 35  LFIRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNV-R 93

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           + C  F +  +  +CA L A++ GKQ+HS ++  G        ++L+N Y K  D  SA 
Sbjct: 94  IVC--FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAE 151

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
            + + +   D    + LIS Y+  G++  AR +FD+  D S V WN+MIS Y  N +  +
Sbjct: 152 LIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHK 211

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
             ++F +M+      +  TLA+VLS C+ LG LE G ++        +  ++IV++A+L+
Sbjct: 212 GWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLE 271

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y K G   D   +F  +   D +  + MI  Y+  GR                      
Sbjct: 272 MYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSN-------------------- 311

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
                      EAL+LF NM    ++ +  +L SV+SACA + S+E GE++ + V   GL
Sbjct: 312 -----------EALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGL 360

Query: 468 DSDQIISTSLVDFYCKCGFI 487
            S+  ++++L+  Y KCG I
Sbjct: 361 ISNVYVASALLGMYSKCGNI 380



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    S+  G+++  +   +G++ S + +A+ LL MY +CGN   A  +FD++
Sbjct: 332 LVSVLSACAQLGSVETGERIGSYVESRGLI-SNVYVASALLGMYSKCGNIIKARQIFDKL 390

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P+R+  +WN+MI G    G  E ++ L+N M +     N+ ++  L++    AG ++   
Sbjct: 391 PQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGL 450

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC- 182
             F  M   + I+ N      + + F R   RL           ++ +  I  T++ A  
Sbjct: 451 EFFRSMRSDHNISPNIEHFACIVDLFCRSG-RLIDAYEFICRMEVEPNVVIWGTLLSASR 509

Query: 183 ----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                +LA L  GK++      N  ++       L N+Y   G +  A +V  +MK+
Sbjct: 510 IHLNVELAELA-GKKLLELEPDNSGNY-----VILSNIYASAGRWQEALKVRKLMKD 560


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/528 (25%), Positives = 228/528 (43%), Gaps = 105/528 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C    S+ +G+QLH   LK G  + T  + N L+ +Y   GN   A  +F  M
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY-VCNALVSLYFHLGNLISAEHIFSNM 349

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND------------------ 103
            +R+  ++N +I G  + G+ EK+++LF  M      P  N                   
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409

Query: 104 ----------FSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                     F+ N  I G     +AK  +++TA   F +    N + WN M+  Y    
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             R + R+F+++    +E +  + +   +++  C  L  LE G+QIHS I+      ++ 
Sbjct: 470 DLRNSFRIFRQMQ---IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAY 526

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S L+++Y K                                GK++ A  +  R     
Sbjct: 527 VCSVLIDMYAKL-------------------------------GKLDTAWDILIRFAGKD 555

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W +MI+GY   N D +AL  F +M   G+  D   L + +SAC+ L  L+ G+Q+H 
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 615

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            AC  G   D+   +AL+  YS+                               CG+IE+
Sbjct: 616 QACVSGFSSDLPFQNALVTLYSR-------------------------------CGKIEE 644

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +   F        I+WN+++ G  Q+G+  EAL +F  MN+  +  + F+  S + A + 
Sbjct: 645 SYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASE 704

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            ++++ G+QV A +T  G DS+  +  +L+  Y KCG I   E   ++
Sbjct: 705 TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 752



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 148/598 (24%), Positives = 250/598 (41%), Gaps = 148/598 (24%)

Query: 8   LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  LL+ C  T+ S+  G++LH   LK G L+S   ++ +L   Y+  G+   A  +FDE
Sbjct: 87  LKWLLEGCLKTNGSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 145

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW-------------- 106
           MP R  F+WN MI+         +   LF      NV P +  FS               
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDV 205

Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N LI  +++ G +  AR +F+ +  ++  +W +MI    +
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 265

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           N    EA+RLF ++    V  +    +  ++V+ AC  + +LE G+Q+H  +L  G   D
Sbjct: 266 NECEAEAIRLFCDM---YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 322

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           + + ++LV+LY   G+  SA  + + M + D    + LI+G + CG              
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY------------- 369

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
                               +A+ LF +M  +G+  D++TLAS++ ACS+ G L  G+Q+
Sbjct: 370 ------------------GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQL 411

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H +  K+G   +  +  ALL+ Y+K      A   F E +V + +L N M+  Y     +
Sbjct: 412 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDL 471

Query: 387 EDAKHIFRTM------PN--------KSLISWNSMIVGLSQNGSPIEA------------ 420
            ++  IFR M      PN        K+ I    + +G   +   I+             
Sbjct: 472 RNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVL 531

Query: 421 LDLFCNMNKLD--------------------------------------------LRMDK 436
           +D++  + KLD                                            +R D+
Sbjct: 532 IDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDE 591

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
             L + +SACA + +L+ G+Q+ A+  + G  SD     +LV  Y +CG  K++E YL
Sbjct: 592 VGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG--KIEESYL 647



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/529 (24%), Positives = 216/529 (40%), Gaps = 106/529 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +C+   ++  G+QLH +  K G  ++   I   LL +Y +C +   AL  F E 
Sbjct: 392 LASLVVACSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLET 450

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
              N   WN M+  +  L     S ++F  M                             
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 510

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      Q N +  ++LI  +AK G+L TA  +      ++ ++W +MI  Y +  
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 570

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  +A+  F+++   L   ++ D   L   + ACA L AL+ G+QIH+   V+G   D  
Sbjct: 571 FDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             ++LV LY +CG    +       +  D+   +AL+SG+   G                
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG---------------- 671

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                        NNE  EAL +F +M R G+  +  T  S + A S    ++ GKQVH 
Sbjct: 672 -------------NNE--EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHA 716

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V +AL+  Y+K G  SDA K F E+   + +                 
Sbjct: 717 VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV----------------- 759

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                         SWN++I   S++G   EALD F  M   ++R +  +L  V+SAC++
Sbjct: 760 --------------SWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSH 805

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           I  ++ G   F  + +  GL         +VD   + G +   + ++ +
Sbjct: 806 IGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQE 854



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 34/218 (15%)

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGFLEHGKQVHGHACK 332
           + IS YIS +E  +   +   +   G+  +  TL  +L  C  + G L+ G+++H    K
Sbjct: 55  AAISVYISEDESFQEKRI-DSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK 113

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  +  ++  L D Y  +G       L+   KV+D                       
Sbjct: 114 LGLDSNGCLSEKLFDFYLFKG------DLYGAFKVFD----------------------- 144

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-S 451
              MP +++ +WN MI  L+      E   LF  M   ++  ++ + + V+ AC   S +
Sbjct: 145 --EMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVA 202

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            ++ EQ+ AR+   GL    ++   L+D Y + GF+ +
Sbjct: 203 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL 240



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 17/221 (7%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ+H    K G  +S   + N L+ MY +CG+ +DA   F E+  +N  SWNA+I  + 
Sbjct: 711 GKQVHAVITKTG-YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----GELKTARTLFNDMPRRNAIA--- 136
           K G   ++L  F+ M   N    ++ + G   A    G +      F  M     ++   
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829

Query: 137 --WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
             +  ++    R G    A    +E+       ++ DA +  T++ AC     +E G + 
Sbjct: 830 EHYVCVVDMLTRAGLLSRAKEFIQEM------PIKPDALVWRTLLSACVVHKNMEIG-EF 882

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            +H L+     DS     L NLY     +++ +     MKE
Sbjct: 883 AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKE 923


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/583 (24%), Positives = 245/583 (42%), Gaps = 159/583 (27%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           ++HF+ +    + LP +N+ L+  ++ G+  +A  +FD+M +++  SW  +I G++    
Sbjct: 40  NIHFISQ----TDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNAND 95

Query: 88  KEKSLQLFNVMPQK--------------------NDFSWNMLISGFA------------- 114
             ++L LF  M  +                    +D ++  L+ G+A             
Sbjct: 96  SSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGS 155

Query: 115 -------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
                  K G++   R +F++MP RN ++W ++I   VR G+ +EA+  F E+      R
Sbjct: 156 ALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEM---WRSR 212

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS-- 225
           ++ D++  A  + ACAD  AL YG++IH+  +  G D  S + ++L  +Y KCG      
Sbjct: 213 VEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGL 272

Query: 226 -----------------------------ANQVLNMMKE----PDDFCLSALISG----- 247
                                        A Q    M+E    P+++  +A+ISG     
Sbjct: 273 TLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLA 332

Query: 248 ------------------------------YANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                                         YA CG++  +  +F   T    V W+++I+
Sbjct: 333 RIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIA 392

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY      +EA  L   MR  G       LASVLSAC ++  LEHGKQ+H +   +G+  
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
             +V SAL++ Y K G   +A +                               IF    
Sbjct: 453 TAMVLSALINMYCKCGSIEEASR-------------------------------IFDAAE 481

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           N  ++SW +MI G +++G   E +DLF  + ++ LR D  +   V+SAC++   ++LG +
Sbjct: 482 NDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFR 541

Query: 458 VFARVTIIGLDSDQIISTS------LVDFYCKCGFIKMDEYYL 494
            F       +     IS S      ++D  C+ G +   E+ +
Sbjct: 542 YFN-----AMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI 579



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 206/450 (45%), Gaps = 109/450 (24%)

Query: 3   TRIDY----LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           +R++Y     A  L++C    +++ G+++H   +KKG   S+  +AN L  MY +CG   
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSF-VANTLATMYNKCGKLE 269

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG-- 112
             L LF++M  R+  SW  +I   +++G +E ++Q F  M +     N++++  +ISG  
Sbjct: 270 YGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCA 329

Query: 113 ---------------------------------FAKAGELKTARTLFNDMPRRNAIAWNS 139
                                            +AK G+L ++  +F++M RR+ ++W++
Sbjct: 330 NLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWST 389

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  Y + G   EA  L   +    +E  +   F LA+V+ AC ++A LE+GKQ+H+++L
Sbjct: 390 IIAGYSQGGHVSEAFELLSWMR---MEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL 446

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             GL+  +++                               LSALI+ Y  CG + +A R
Sbjct: 447 SIGLEHTAMV-------------------------------LSALINMYCKCGSIEEASR 475

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FD   +   V W +MI+GY  +    E + LF K+ R G+  D+ T   VLSACS  G 
Sbjct: 476 IFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGL 535

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           ++ G +                     +  SK+   S + + +             MI +
Sbjct: 536 VDLGFR-------------------YFNAMSKKYQISPSKEHY-----------GCMIDL 565

Query: 380 YSSCGRIEDAKHIFRTMP-NKSLISWNSMI 408
               GR+ DA+H+   MP ++  + W++++
Sbjct: 566 LCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 194/396 (48%), Gaps = 52/396 (13%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++ +AK+  L+ A  +F ++P+ +  +W  +I  + R G + + + LF ++    V 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV- 383

Query: 167 RLQC-DAFILATVIGACA-DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              C + F L+ V+ +C+ ++     GK IH  IL NGLD D+VL +S+++ Y KC  F 
Sbjct: 384 ---CPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFG 440

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A ++  +M E D    + ++S Y   G M  +  +F +     +  WN+MI G + N  
Sbjct: 441 YAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGC 500

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           +  AL L +KM   G   +  T +  L   SSL  L  GKQ+H    KVGV+DD  V ++
Sbjct: 501 ERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNS 560

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---- 400
           L+D Y K                               CG +E A  IF+ +P +S    
Sbjct: 561 LIDMYCK-------------------------------CGEMEKASVIFKHLPQESSMMN 589

Query: 401 -----------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                       +SW+SM+ G  QNG   +AL  F  M    + +DKF+L SV+SACA+ 
Sbjct: 590 SEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASA 649

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             LELG QV   +  IG   D  + +S++D Y KCG
Sbjct: 650 GVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCG 685



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 233/480 (48%), Gaps = 84/480 (17%)

Query: 8   LARLLQSCNTH-HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L+ +L+SC+++ +   +GK +H   L+ G L+    + N +L  Y++C            
Sbjct: 390 LSIVLKSCSSNVNDSRIGKGIHGWILRNG-LDLDAVLNNSILDYYVKC------------ 436

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
                CF            G+ EK   LF +M +K+  SWN+++S + + G+++ +  LF
Sbjct: 437 ----RCF------------GYAEK---LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLF 477

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             +P ++A +WN+MI   +RNG  R A+ L  ++   +      +    +  +   + L+
Sbjct: 478 RQLPGKDAASWNTMIDGLMRNGCERVALELLYKM---VAAGPAFNKLTFSIALVLASSLS 534

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            L  GKQIH+ +L  G+  D  + +SL+++Y KCG+   A+ +   + +      S++++
Sbjct: 535 VLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQE-----SSMMN 589

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
              +C   +DA           SV W+SM+SGY+ N    +AL  F  M  + V  D  T
Sbjct: 590 SEESC---DDAV--------VESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFT 638

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           L SV+SAC+S G LE G+QVHG+  K+G   DV + S+++D Y K G  +DA  +F++ K
Sbjct: 639 LTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAK 698

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
             + +L  +MI+  +  G+  +A  +F  M N+          G++ N            
Sbjct: 699 DRNVVLWTSMISGCALHGQGREAVRLFELMINE----------GITPN------------ 736

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
                    + S   V++AC++   LE G + F  +  + G+       T +VD Y + G
Sbjct: 737 ---------EVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAG 787


>gi|302809332|ref|XP_002986359.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
 gi|300145895|gb|EFJ12568.1| hypothetical protein SELMODRAFT_123910 [Selaginella moellendorffii]
          Length = 516

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 177/321 (55%), Gaps = 10/321 (3%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK- 234
           A+++  C    AL  GKQ+HSH++  GLD D VLG  LV +YGKC     A      +  
Sbjct: 28  ASLLRQCGRSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLGDARDAFERLAY 87

Query: 235 -------EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                   PD    ++L++ YA CG+++DAR +FD     S   WN+MI+GY   +   E
Sbjct: 88  RDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMIAGYAHLDLGDE 147

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A  LF  +   G+  D  T  ++L ACS+  F++ G+ +H     +G+  ++++A+ALLD
Sbjct: 148 AFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLDSNLVLATALLD 207

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y+K G    A  +F+ +   D    N++I +Y+ CG +++A+  F +MP +S++SWN +
Sbjct: 208 MYAKCGSIEGARSVFASMA--DNKNQNSIINMYARCGSLDEARACFDSMPRRSVVSWNVL 265

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           + G  +     E+L L   M+   +  + F+ + V +AC+ +  L  G    +R+   G 
Sbjct: 266 MSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFSCVATACSLLKDLRAGRAAHSRIVASGF 325

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
           D+D+++ T+L+D Y +CG ++
Sbjct: 326 DTDRVVVTALMDMYGRCGSVE 346



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 223/488 (45%), Gaps = 65/488 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C    ++  GKQ+H H + +G L+    + + L+QMY +C +  DA   F+ + 
Sbjct: 28  ASLLRQCGRSRALWAGKQVHSHMIARG-LDRDKVLGDILVQMYGKCRSLGDARDAFERLA 86

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
            R+ +S                      + P  +    N L++ +AK G +  AR+LF+ 
Sbjct: 87  YRDIYS---------------------GMTP--DVVVHNSLVNLYAKCGRIDDARSLFDG 123

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           M  R+  +WN+MI  Y       EA  LF+ ++   +E L  D      ++GAC+    +
Sbjct: 124 MQVRSLASWNAMIAGYAHLDLGDEAFDLFRCID---LEGLGPDMLTFINLLGACSTPEFV 180

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
           + G+ IH+ +   GLD + VL ++L+++Y KCG    A  V   M   D+   +++I+ Y
Sbjct: 181 DAGRNIHARVAALGLDSNLVLATALLDMYAKCGSIEGARSVFASMA--DNKNQNSIINMY 238

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           A CG +++AR  FD     S V WN ++SGY+   +  E+L L   M   G+  +A T +
Sbjct: 239 ARCGSLDEARACFDSMPRRSVVSWNVLMSGYVEQQQGEESLKLVRCMDWQGIHPNAFTFS 298

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            V +ACS L  L  G+  H      G   D +V +AL+D Y +                 
Sbjct: 299 CVATACSLLKDLRAGRAAHSRIVASGFDTDRVVVTALMDMYGR----------------- 341

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNK-----SLISWNSMIVGLSQNGSPIEALDL 423
                         CG +E A+  F  M  +      ++SWN+M+   S +G P EAL+L
Sbjct: 342 --------------CGSVEAARRTFDDMRRRCSTRVDVVSWNAMMGLYSHHGQPREALEL 387

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M       ++ SL  V+ AC +   +    +  AR    G+   +     +VD   +
Sbjct: 388 FGEMGLAGEAGNEVSLTLVLHACTHAGLVADAVEALARGVEAGIVPSREHYACVVDVLAR 447

Query: 484 CGFIKMDE 491
            G +++ E
Sbjct: 448 AGKLEVAE 455



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 11/200 (5%)

Query: 300 VLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           VLED    +T AS+L  C     L  GKQVH H    G+  D ++   L+  Y K     
Sbjct: 17  VLEDNPGKATYASLLRQCGRSRALWAGKQVHSHMIARGLDRDKVLGDILVQMYGKCRSLG 76

Query: 357 DACKLFSELK---VY-----DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           DA   F  L    +Y     D ++ N+++ +Y+ CGRI+DA+ +F  M  +SL SWN+MI
Sbjct: 77  DARDAFERLAYRDIYSGMTPDVVVHNSLVNLYAKCGRIDDARSLFDGMQVRSLASWNAMI 136

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G +      EA DLF  ++   L  D  +  +++ AC+    ++ G  + ARV  +GLD
Sbjct: 137 AGYAHLDLGDEAFDLFRCIDLEGLGPDMLTFINLLGACSTPEFVDAGRNIHARVAALGLD 196

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           S+ +++T+L+D Y KCG I+
Sbjct: 197 SNLVLATALLDMYAKCGSIE 216


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/528 (26%), Positives = 237/528 (44%), Gaps = 106/528 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C       +GK +H + +K G  +S L ++   + MY +CG    A L FD++
Sbjct: 149 LATVLKACGGLGCSRIGKCVHGYAVKIG-FDSDLFVSGSTVYMYCKCGILDMAGLAFDQI 207

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKND-------------------- 103
             ++  +WN MI G+ +  ++E++++LF  M     + ND                    
Sbjct: 208 ENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGR 267

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          F    L+  ++K  +++     F +M +RN +++N++I  Y   G
Sbjct: 268 CFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMG 327

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+R++ +L S   E ++ D+F    +  +C+  + +  G Q+H H +  GLD D  
Sbjct: 328 KYEEALRVYSQLQS---EGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVS 384

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G+S+VN Y KCG                 F  SAL                F+     +
Sbjct: 385 VGNSIVNFYSKCG-----------------FTDSAL--------------EAFESINRPN 413

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV W  +ISG+  N E  +AL+ F KMR+     D  + +SV+ A SS   +E G+ +H 
Sbjct: 414 SVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHA 473

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  K G+   + V SA++D YSK                               CG +ED
Sbjct: 474 HVMKSGLDCTIYVGSAVIDMYSK-------------------------------CGMVED 502

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  MP K+++SWNSMI G +QNG   EAL LF  M    +     +   ++ AC++
Sbjct: 503 AQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSH 562

Query: 449 ISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
              +E G   +   V   G+       T +VD   + G+++  E +L+
Sbjct: 563 AGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLL 610



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 220/521 (42%), Gaps = 111/521 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + +C       +   LH   LKKG  N  L +++ L+ MY +     +A  LFD+MP R+
Sbjct: 48  ISACAQSTRPSLATSLHCLILKKGFSNQ-LFVSSGLISMYSKHDRIKEARFLFDDMPERD 106

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA----------------- 114
             SWN+MI G+ + G  E++  LF  M    + +W +L+S F                  
Sbjct: 107 DVSWNSMIAGYSQRGLNEEACGLFCSMINSCE-NWKLLVSDFTLATVLKACGGLGCSRIG 165

Query: 115 ---------------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                      K G L  A   F+ +  ++ +AWN+MI  Y +N
Sbjct: 166 KCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQN 225

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
            +  EA+ LF ++    +E  + +      V+ A   ++    G+  H+ +L  G   D 
Sbjct: 226 CYEEEAIELFYQME---LEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDV 282

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++LV++Y K  D     +    M + +    +ALI+GY+  GK  +A RV+      
Sbjct: 283 FVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYS----- 337

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                                     +++  G+  D+ T   + S+CS    +  G QVH
Sbjct: 338 --------------------------QLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVH 371

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            H+ K G+  DV V +++++ YSK                               CG  +
Sbjct: 372 VHSVKFGLDSDVSVGNSIVNFYSK-------------------------------CGFTD 400

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A   F ++   + + W  +I G +QNG   +AL  FC M K   + D+FS +SVI A +
Sbjct: 401 SALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVS 460

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + +++E G  + A V   GLD    + ++++D Y KCG ++
Sbjct: 461 SWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVE 501



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 142/355 (40%), Gaps = 61/355 (17%)

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           M   N + W S I    R G   +A+  F ++   L   ++ +A   +  I ACA     
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQM---LRAGIEPNAITYSATISACAQSTRP 57

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
                +H  IL  G      + S L+++Y K      A  + + M E DD   +++I+GY
Sbjct: 58  SLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGY 117

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           +  G   +A  +F    + S   W  ++S +                          TLA
Sbjct: 118 SQRGLNEEACGLFCSMIN-SCENWKLLVSDF--------------------------TLA 150

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           +VL AC  LG    GK VHG+A K+G   D+ V+ + +  Y K G+   A   F +++  
Sbjct: 151 TVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENK 210

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +  NTMIT                               G +QN    EA++LF  M 
Sbjct: 211 DIVAWNTMIT-------------------------------GYAQNCYEEEAIELFYQME 239

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
               + +  +   V+ A   +S   +G    A+V  +G   D  ++T+LVD Y K
Sbjct: 240 LEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSK 294



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 27/224 (12%)

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           +T+ V W S I+         +AL  F +M R G+  +A T ++ +SAC+          
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H    K G  + + V+S L+  YSK     +A  LF ++   D +  N+MI  YS  G 
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            E+A  +F +M N S  +W                           L +  F+LA+V+ A
Sbjct: 123 NEEACGLFCSMIN-SCENWK--------------------------LLVSDFTLATVLKA 155

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           C  +    +G+ V      IG DSD  +S S V  YCKCG + M
Sbjct: 156 CGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDM 199



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           + ++++ ++  ++  G+ LH H +K G L+ T+ + + ++ MY +CG   DA  +F  MP
Sbjct: 453 SSVIKAVSSWAAVEQGRHLHAHVMKSG-LDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMP 511

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGF----AKAGELKTART 124
            +N  SWN+MI G+ + G  +++L LF  M         +   G     + AG ++  R 
Sbjct: 512 EKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRN 571

Query: 125 LFNDMPRRNAIAWNSMIHCYV------RNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +N M     I   SM HC        R G+  EA          L      +  I  ++
Sbjct: 572 FYNLMVHNYGIP-PSMEHCTCMVDLLGRAGYLEEAEAFL------LSSSFSKEPGIWGSL 624

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           + AC      + G +   H L     + S   ++L N+Y     ++  +++ ++MK+
Sbjct: 625 LSACGVHKNSDVGSRAAQHCLFLEPHYSSSY-TALSNIYASKELWSEVSRIRDLMKD 680


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 229/493 (46%), Gaps = 73/493 (14%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q   +FL+    ++ +   N  +  + R GN  +A  +F +M  R+  SW AMI  + + 
Sbjct: 35  QKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAEN 94

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG-ELKTARTLFNDMPRRNAIAWNSMIHCY 144
           G   K+ Q+F+ MP +   S+N +I+   K   +L  A  LF D+P +NA+++ +MI  +
Sbjct: 95  GKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGF 154

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           VR G   EA  L+ E                            +++   + S++L++G  
Sbjct: 155 VRAGRFDEAEFLYAE--------------------------TPVKFRDSVASNVLLSG-- 186

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                       Y + G +N A +V   M   +    S+++ GY   G++ DAR +FDR 
Sbjct: 187 ------------YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHG 323
           T+ + + W +MI GY       +   LF +MR+ G V  +++TLA +  AC        G
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREG 294

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
            Q+HG   ++ +  D+ + ++L+  YSK G   +A  +F  +K  D++  N++IT     
Sbjct: 295 SQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQR 354

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------------------- 412
            +I +A  +F  MP K ++SW  MI G S                               
Sbjct: 355 KQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFV 414

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
            NG   EAL  F  M + ++  + ++ +SV+SA A+++ L  G Q+  RV  + + +D  
Sbjct: 415 SNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS 474

Query: 473 ISTSLVDFYCKCG 485
           +  SLV  YCKCG
Sbjct: 475 VQNSLVSMYCKCG 487



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 209/446 (46%), Gaps = 66/446 (14%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           ++  ++R G   +A  L+ E P   R+  + N ++ G+++ G   +++++F  M  K   
Sbjct: 150 MITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVV 209

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S + ++ G+ K G +  AR+LF+ M  RN I W +MI  Y + GF  +   LF  +  + 
Sbjct: 210 SCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQE- 268

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++ ++  LA +  AC D      G QIH  +    L+FD  LG+SL+++Y K G   
Sbjct: 269 -GDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMG 327

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT------------------- 265
            A  V  +MK  D    ++LI+G     ++++A  +F++                     
Sbjct: 328 EAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGE 387

Query: 266 ------------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                       +  ++ W +MIS ++SN    EAL  FHKM +  V  ++ T +SVLSA
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +SL  L  G Q+HG   K+ +++D+ V ++L+  Y K G  +DA K+FS +   + +  
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI+                               G S NG   +AL LF  +      
Sbjct: 508 NTMIS-------------------------------GYSYNGFGKKALKLFSMLESSGKE 536

Query: 434 MDKFSLASVISACANISSLELGEQVF 459
            +  +  +++SAC ++  ++LG + F
Sbjct: 537 PNGVTFLALLSACVHVGYVDLGWKYF 562



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 167/359 (46%), Gaps = 36/359 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA + ++C        G Q+H   + +  L   L + N L+ MY + G   +A  +F  M
Sbjct: 278 LAVMFKACRDFVRYREGSQIH-GLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVM 336

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SWN++I G ++     ++ +LF  MP K+  SW  +I GF+  GE+     LF 
Sbjct: 337 KNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFG 396

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ I W +MI  +V NG+  EA+  F ++   L + +  +++  ++V+ A A LA 
Sbjct: 397 MMPEKDNITWTAMISAFVSNGYYEEALCWFHKM---LQKEVCPNSYTFSSVLSATASLAD 453

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QIH  ++   +  D  + +SLV++Y KCG+ N A ++ + + EP+    + +ISG
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISG 513

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+                                N    +AL LF  +  +G   +  T 
Sbjct: 514 YS-------------------------------YNGFGKKALKLFSMLESSGKEPNGVTF 542

Query: 308 ASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
            ++LSAC  +G+++ G K          +       + ++D   + G+  DA  L S +
Sbjct: 543 LALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM 601



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 135/279 (48%), Gaps = 8/279 (2%)

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +S ++ + + G+   A  +   M         A+IS YA  GKM+ A +VFD      + 
Sbjct: 54  NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113

Query: 271 MWNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            +N+MI+  I N  D  +A  LF  +      ++A + A++++     G  +  + ++  
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPE----KNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                   D + ++ LL  Y + G  ++A ++F  + V + +  ++M+  Y   GRI DA
Sbjct: 170 TPVK--FRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDA 227

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACAN 448
           + +F  M  +++I+W +MI G  + G   +   LF  M +  D++++  +LA +  AC +
Sbjct: 228 RSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRD 287

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                 G Q+   V+ + L+ D  +  SL+  Y K G++
Sbjct: 288 FVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM 326


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 189/389 (48%), Gaps = 66/389 (16%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++ ++K   L  A  +F+    RN+I W++M+  Y +NG + EA++LF  + S    
Sbjct: 249 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFS---A 305

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++   + +  V+ AC+D+  L  GKQ+HS +L  G                        
Sbjct: 306 GIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGF----------------------- 342

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                   E   F  +AL+  YA  G + DAR+ FD   +    +W S+ISGY+ N+++ 
Sbjct: 343 --------ERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNE 394

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL+L+ +M+  G++ +  T+ASVL ACSSL  LE GKQVHGH  K G   +V + SAL 
Sbjct: 395 EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 454

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y+K                               CG +ED   +FR  PNK ++SWN+
Sbjct: 455 TMYTK-------------------------------CGSLEDGNLVFRRTPNKDVVSWNA 483

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-II 465
           MI GLS NG   EAL+LF  M       D  +  ++ISAC++   +E G   F  ++   
Sbjct: 484 MISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQF 543

Query: 466 GLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           GLD        +VD   + G +K  + ++
Sbjct: 544 GLDPKVDHYACMVDVLSRAGQLKETKEFI 572



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 213/511 (41%), Gaps = 109/511 (21%)

Query: 17  THHSIH----VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           THHS H     G+ +H   ++ G    T   AN L+  Y +CG    A  +F+ +  ++ 
Sbjct: 24  THHSQHRNLVAGRAVHAQIIRTGTSTCTQH-ANVLVNFYAKCGQLAKAHSIFNAIICKDV 82

Query: 73  FSWNAMIEGFMKLGHKEKS---LQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
            SWN++I G+ + G    S   +QLF  M  ++     +L + +  AG  K   +L +  
Sbjct: 83  VSWNSLITGYSQNGGISSSHTVMQLFREMRAQD-----ILPNAYTLAGIFKAESSLQSCT 137

Query: 130 PRRNAIAW-------------NSMIHCYVRNG--------------FAREAVRLFKELNS 162
             R A A               S++  Y + G              + ++ +R  ++L S
Sbjct: 138 VGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVLR--RQLKS 195

Query: 163 DLV-----ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
            +      E+     ++   V+ + A    +  G+QIH   + NGL     L ++LV +Y
Sbjct: 196 SICFLEEKEKESDSDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMY 255

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            KC   N A ++ +   + +    SA+++GY+                            
Sbjct: 256 SKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ--------------------------- 288

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
               N E  EA+ LF +M   G+     T+  VL+ACS + +L  GKQ+H    K+G   
Sbjct: 289 ----NGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFER 344

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            +   +AL+D Y+K G  +DA K F  L+  D  L  ++I+                   
Sbjct: 345 HLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLIS------------------- 385

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
                       G  QN    EAL L+  M    +  +  ++ASV+ AC+++++LELG+Q
Sbjct: 386 ------------GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ 433

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           V       G   +  I ++L   Y KCG ++
Sbjct: 434 VHGHTIKHGFGLEVPIGSALSTMYTKCGSLE 464



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 5/126 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C++  ++ +GKQ+H H +K G     +PI + L  MY +CG+  D  L+F   
Sbjct: 415 MASVLKACSSLATLELGKQVHGHTIKHG-FGLEVPIGSALSTMYTKCGSLEDGNLVFRRT 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P ++  SWNAMI G    G  +++L+LF  M     + +D ++  +IS  +  G ++   
Sbjct: 474 PNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGW 533

Query: 124 TLFNDM 129
           + F+ M
Sbjct: 534 SYFHMM 539



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 46/259 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQLH   LK G     L     L+ MY + G   DA   FD +  R+   W ++I G++
Sbjct: 330 GKQLHSFLLKLG-FERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYV 388

Query: 84  KLGHKEKSLQLF------NVMPQ----------------------------KNDFSWNML 109
           +    E++L L+       ++P                             K+ F   + 
Sbjct: 389 QNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 448

Query: 110 ISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           I       + K G L+    +F   P ++ ++WN+MI     NG   EA+ LF+E+   L
Sbjct: 449 IGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEM---L 505

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVN--GLDFDSVLGSSLVNLYGKCGD 222
            E  + D      +I AC+    +E G   + H++ +  GLD      + +V++  + G 
Sbjct: 506 AEGTEPDDVTFVNIISACSHKGFVERGWS-YFHMMSDQFGLDPKVDHYACMVDVLSRAGQ 564

Query: 223 FNSANQVLNMMKEPDDFCL 241
                + +         CL
Sbjct: 565 LKETKEFIESASIDHGLCL 583



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 28/182 (15%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           STL   L+  S    L  G+ VH    + G       A+ L++ Y+K G  + A  +F+ 
Sbjct: 17  STLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNA 76

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +   D +  N++IT YS  G I  +  +                            + LF
Sbjct: 77  IICKDVVSWNSLITGYSQNGGISSSHTV----------------------------MQLF 108

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M   D+  + ++LA +  A +++ S  +G Q  A V  +    D  + TSLV  YCK 
Sbjct: 109 REMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKA 168

Query: 485 GF 486
           G 
Sbjct: 169 GL 170


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 195/397 (49%), Gaps = 44/397 (11%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R GN   A  +FDEMP R+  SWN++I G+ K G  ++S +LF +MP KN  SWN +I+G
Sbjct: 59  RAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAG 118

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
             +   +  A   F  MP+RN  +WN+MI   VR     EA RLF+E+        + + 
Sbjct: 119 CIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMP-------RRNV 171

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLN 231
                ++   A +  +E  +      L N +   +V+  + +++ Y + G F+ A  +  
Sbjct: 172 ISYTAMVDGYAKIGEIEQAR-----ALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFE 226

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M + +   ++A+I+GY   GK + A+ +FD+        WN+MI+GY  N    EAL L
Sbjct: 227 QMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKL 286

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
             +M + G+  D STL SVL+ACSSL  L+ G++ H    K G              Y  
Sbjct: 287 HSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSG--------------YES 332

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
           R                   + N +IT+Y  CG I D++  FR + +  ++SWN+MI   
Sbjct: 333 R-----------------ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAF 375

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +++G    AL  F  M    +  D  +  S++SAC +
Sbjct: 376 ARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH 412



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 169/385 (43%), Gaps = 97/385 (25%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   +R     +A  LF+EMPRRN  S+ AM++G+ K+G  E++  LFN MPQKN  
Sbjct: 144 NAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV 203

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIA---------------------------- 136
           SW ++ISG+ + G+   A  LF  MP +N +A                            
Sbjct: 204 SWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRD 263

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              WN+MI  Y +NG   EA++L  ++   L   +Q D   L +V+ AC+ LA+L+ G++
Sbjct: 264 LASWNAMITGYAQNGSGEEALKLHSQM---LKMGMQPDHSTLISVLTACSSLASLQEGRK 320

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
            H  +L +G +    + ++L+ +Y KCG    +      +  PD    +A+I+ +A  G 
Sbjct: 321 THVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG- 379

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                  +DR                        AL  F +MR N V  D  T  S+LSA
Sbjct: 380 ------FYDR------------------------ALASFGEMRSNRVEPDGITFLSLLSA 409

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKLFSELKVYDTIL 372
           C             GHA KV   + +   ++++ +Y     P   AC             
Sbjct: 410 C-------------GHAGKVH--ESLNWFNSMIXSYKIVXRPEHFAC------------- 441

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMP 397
              ++ + S  G++E A  I + MP
Sbjct: 442 ---LVDILSRGGQVEKAYKIIQEMP 463



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 148/282 (52%), Gaps = 8/282 (2%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+V  +S++  Y K G F+ + ++  +M   +    +++I+G     ++++A + F    
Sbjct: 77  DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMP 136

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             ++  WN+MISG +  +   EA  LF +M R  V+    +  +++   + +G +E  + 
Sbjct: 137 QRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVI----SYTAMVDGYAKIGEIEQARA 192

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +     +  V+   ++ S     Y + G   +A  LF ++   + + +  MIT Y   G+
Sbjct: 193 LFNCMPQKNVVSWTVMISG----YVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGK 248

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            + AK +F  +P + L SWN+MI G +QNGS  EAL L   M K+ ++ D  +L SV++A
Sbjct: 249 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 308

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           C++++SL+ G +    V   G +S   I  +L+  YCKCG I
Sbjct: 309 CSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSI 350



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C++  S+  G++ H+  LK G   S + I N L+ MY +CG+  D+ L F ++
Sbjct: 302 LISVLTACSSLASLQEGRKTHVLVLKSG-YESRISICNALITMYCKCGSILDSELAFRQI 360

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SWNAMI  F + G  +++L  F  M     + +  ++  L+S    AG++  + 
Sbjct: 361 DHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESL 420

Query: 124 TLFNDMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M     I         ++    R G   +A ++ +E+        + D  I   +
Sbjct: 421 NWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMP------FEADCGIWGAL 474

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           + AC     ++ G ++ +  +V     +S     L N+Y   G +    +V  +M+E
Sbjct: 475 LAACHVHLNVKLG-ELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMRE 530



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 8/171 (4%)

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
           F    +Q H  + K+    DV   +  +   ++ G    A ++F E+   DT+  N++IT
Sbjct: 27  FHSFNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIIT 86

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
            Y   G  +++K +F  MP K+++SWNSMI G  ++    EA   F  M + +      S
Sbjct: 87  GYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNT----AS 142

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             ++IS       +E   ++F  +    +    I  T++VD Y K G I+ 
Sbjct: 143 WNAMISGLVRYDRVEEASRLFEEMPRRNV----ISYTAMVDGYAKIGEIEQ 189


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 211/448 (47%), Gaps = 77/448 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y +   P +A  +FD+M  RN  SWN ++ G++  G   ++ ++F+ MP++N  
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSD 163
           SW  ++ G+ K G +  A TLF  MP +N ++W  M+   ++ G   EA RLF  +   D
Sbjct: 193 SWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKD 252

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGD 222
           +V R          + G C      + G+ + + +L + +   +V+  ++++  Y +   
Sbjct: 253 VVTRTN-------MIGGYC------QVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQ 299

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA------------------------- 257
            + A ++  +M E ++   +A++ GY NCG++++A                         
Sbjct: 300 VDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQN 359

Query: 258 ------RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                 R+VFD+  +     W++MI  Y     + +AL LF  M+R G+  +  +L SVL
Sbjct: 360 GEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVL 419

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           S C+ L  L+HG+++H    +     DV VAS LL  Y K                    
Sbjct: 420 SVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIK-------------------- 459

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      CG +  AK +F     K ++ WNS+I G +Q+G  +EAL +F +M+   
Sbjct: 460 -----------CGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSG 508

Query: 432 LRMDKFSLASVISACANISSLELGEQVF 459
           +  D  +   V+SAC+   +++ G ++F
Sbjct: 509 IMPDDVTFVGVLSACSYTGNVKKGLEIF 536



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 188/413 (45%), Gaps = 50/413 (12%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
            S N++I  + +LG  EK+  +F+ M  KN  SWN +++G+ +    + A+ +F+ M  R
Sbjct: 99  ISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER 158

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N I+WN ++  Y+ NG   EA  +F  +    V  +   A +   V       A   + +
Sbjct: 159 NTISWNGLVSGYINNGMINEAREVFDRMPERNV--VSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
               ++    + +  +LG  L     + G  + A ++ +MM E D    + +I GY   G
Sbjct: 217 MPEKNV----VSWTVMLGGLL-----QEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           ++ +AR +FD     + V W +MI+GY+ N +   A  LF  M                 
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK-------------- 313

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
                                    + +  +A+L  Y+  G   +A +LF+ + +   + 
Sbjct: 314 -------------------------NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N MI  +   G +  A+ +F  M  K   +W++MI    + G  ++AL+LF  M +  +
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI 408

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           R +  SL SV+S CA +++L+ G ++ A++     D D  +++ L+  Y KCG
Sbjct: 409 RPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG 461



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 125/279 (44%), Gaps = 40/279 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    ++  G+++H   ++    +  + +A+ LL MY++CGN   A  +FD  
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKAGELKT 121
             ++   WN++I G+ + G   ++L++F+      +MP  +D ++  ++S  +  G +K 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP--DDVTFVGVLSACSYTGNVKK 531

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVER--LQCDAFI 174
              +FN M  +  +      +  M+    R G   EA+        DL+E+  ++ DA I
Sbjct: 532 GLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM--------DLIEKMPMEADAII 583

Query: 175 LATVIGACADLAALEYGKQIHSHILV----NGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
              ++GAC     L+  +     +LV    N   F  +L   L N+Y   G ++   ++ 
Sbjct: 584 WGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPF--IL---LSNIYASQGRWDDVAELR 638

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
             M++         +S Y  C  +   ++V   T   SS
Sbjct: 639 RNMRD-------RRVSKYPGCSWIVVEKKVHKFTGGDSS 670



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           +I  ++L+  YS+ G    A  +F E++  + I  N+++  Y    R ++A+++F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           ++ ISWN ++ G   NG   EA ++F  M
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRM 186


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 246/527 (46%), Gaps = 84/527 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR- 70
           L+ CN   S+   K LH   + +G+L     +A  L+  Y+   +   A+LL + +P   
Sbjct: 168 LKECN---SLAHAKLLHQQSIMQGLL---FHLATNLIGTYIASNSTAYAILLLERLPPSP 221

Query: 71  -NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------------- 100
            + F WN +I   + LG       L+  M                               
Sbjct: 222 SSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASL 281

Query: 101 ----------KNDFSWNMLISGFAKAGELKTARTLFNDMPRR---NAIAWNSMIHCYVRN 147
                      N F  N ++S + K G L+ A  +F+D+  R   + ++WNS++  Y+  
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
             A  A+ LF ++ +  +  +  D   L  ++ ACA LAA   G+Q+H   + +GL  D 
Sbjct: 342 SDANTALALFHKMTTRHL--MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDV 399

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            +G+++V++Y KCG    AN+V   MK  D    +A+++GY+  G++  A  +F+R T+ 
Sbjct: 400 FVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEE 459

Query: 268 S----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
           +     V W ++I+GY    +  EAL +F +M   G   +  TL S+LSAC S+G L HG
Sbjct: 460 NIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHG 519

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K+ H +A K  +  D     A                   +LKV     +N +I +Y+ C
Sbjct: 520 KETHCYAIKFILNLDGPDPGA------------------DDLKV-----INGLIDMYAKC 556

Query: 384 GRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSL 439
              E A+ +F ++  K   +++W  MI G +Q+G    AL LF  M K+D  ++ + F+L
Sbjct: 557 QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTL 616

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
           +  + ACA +++L  G QV A V      S  + ++  L+D Y K G
Sbjct: 617 SCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSG 663



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 175/376 (46%), Gaps = 47/376 (12%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  NA+++ + K G  E++ ++F  M  K+  SWN +++G+++AG L+ A +LF  M 
Sbjct: 398 DVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMT 457

Query: 131 RRN----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             N     + W ++I  Y + G   EA+ +F+++  D   R   +   L +++ AC  + 
Sbjct: 458 EENIELDVVTWTAVITGYAQRGQGCEALDVFRQM-CDCGSRP--NVVTLVSLLSACVSVG 514

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--DDF-CLSA 243
           AL +GK+ H + +   L+ D                            +P  DD   ++ 
Sbjct: 515 ALLHGKETHCYAIKFILNLDG--------------------------PDPGADDLKVING 548

Query: 244 LISGYANCGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRR--NG 299
           LI  YA C     AR++FD  +  D   V W  MI GY  + +   AL LF  M +    
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSD 357
           +  +  TL+  L AC+ L  L  G+QVH +  +   G +  + VA+ L+D YSK G    
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVM-LFVANCLIDMYSKSGDVDT 667

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQ 413
           A  +F  +   + +   +++T Y   GR EDA  +F  M    L    I++  ++   S 
Sbjct: 668 AQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSH 727

Query: 414 NGSPIEALDLFCNMNK 429
           +G     ++ F  M+K
Sbjct: 728 SGMVDHGINFFNRMSK 743



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 37/231 (16%)

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           + +S   WN +I   +      +   L+ +M+  G   D  T   V  AC++L  L  G 
Sbjct: 220 SPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGA 279

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H    + G   +V V                                N ++++Y  CG
Sbjct: 280 SLHATVSRSGFASNVFVC-------------------------------NAVVSMYGKCG 308

Query: 385 RIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLA 440
            +  A ++F  + ++    L+SWNS++           AL LF  M    L   D  SL 
Sbjct: 309 ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLV 368

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +++ ACA++++   G QV       GL  D  +  ++VD Y KCG  KM+E
Sbjct: 369 NILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCG--KMEE 417



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 92/190 (48%), Gaps = 15/190 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++  G+Q+H + L+    +  L +AN L+ MY + G+   A ++FD MP+RN
Sbjct: 620 LVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRN 679

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             SW +++ G+   G  E +L++F+ M +     +  ++ +++   + +G +      FN
Sbjct: 680 AVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFN 739

Query: 128 DMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +      +  M+  + R G   EA++L  E+       ++    +   ++ AC
Sbjct: 740 RMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMP------MEPTPVVWVALLSAC 793

Query: 183 ADLAALEYGK 192
              + +E G+
Sbjct: 794 RLHSNVELGE 803


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 190/387 (49%), Gaps = 37/387 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L   +R G   +A  +F+EMP ++  SWN MI G+ +    E++  LF+ M  +N  
Sbjct: 173 NSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVV 232

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W  +ISG+ +AG ++    LF  MP RN ++W +MI  +  NGF +EA+ LF E+  + 
Sbjct: 233 TWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNY 292

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-------------- 210
             +   + FI  ++  ACA +     G Q H+H+++N  D+D   G              
Sbjct: 293 DMKPNDETFI--SLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFG 350

Query: 211 ---------------------SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
                                +S++N Y + G    A  + + +   D    +++I+GY 
Sbjct: 351 FMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYF 410

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           N G++  A  +F+   D  +V W  M+SG++ N    EA  LF +MR  GV    ST + 
Sbjct: 411 NVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSI 470

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L A  ++ +L+ G+Q H    K     D+I+ ++L+  Y+K G   DA  +FS++   D
Sbjct: 471 LLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRD 530

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTM 396
            I  N+MI  +S  G   +A  +F  M
Sbjct: 531 LISWNSMIMGFSHHGLTSEALKVFEAM 557



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 217/509 (42%), Gaps = 79/509 (15%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C +   +   + +      +G+L+  +     LL  + + G   +A  LF+ MP RN  +
Sbjct: 51  CLSQQRLREARHMLDEMPNRGVLDRVV-CWTSLLSKFSKNGFIDEARALFEIMPERNVVT 109

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134
           +NAM+ G+++ G    + + F  MP++N  SW  L+ G A AG +  AR LFN MP RN 
Sbjct: 110 YNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNV 169

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           ++WNSM+   +R+G   EA R+F E+                                Q+
Sbjct: 170 VSWNSMLVGLIRSGQLEEARRVFNEMPVK----------------------------SQV 201

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
             ++++ G              Y +      A  + + M + +    +++ISGY   G +
Sbjct: 202 SWNVMIAG--------------YAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNV 247

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSA 313
            +   +F +  + + V W +MI G+  N    EALLLF +M+ N  ++ +  T  S+  A
Sbjct: 248 QEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYA 307

Query: 314 CSSLGFLEHGKQVHGH----------------------ACKVGVID-------------D 338
           C+ +GF   G Q H H                          G +D             +
Sbjct: 308 CAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYN 367

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
               +++++ Y + G    A  LF  + V D I   +MI  Y + G+I  A ++F  MP+
Sbjct: 368 TQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPD 427

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           +  ++W  M+ G  QN    EA  LF  M    +     + + ++ A   ++ L+ G Q 
Sbjct: 428 RDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQF 487

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFI 487
              +     + D I+  SL+  Y KCG I
Sbjct: 488 HCLLMKTQFEFDLILQNSLISMYAKCGEI 516



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 15/225 (6%)

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           +S I   +S     EA  +  +M   GVL+      S+LS  S  GF++  + +     +
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALF----E 100

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +    +V+  +A+L  Y + G  SDAC+ F E+   + +   +++   ++ GRI +A+ +
Sbjct: 101 IMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEAREL 160

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP ++++SWNSM+VGL ++G   EA  +F   N++ ++  + S   +I+  A  S +
Sbjct: 161 FNVMPERNVVSWNSMLVGLIRSGQLEEARRVF---NEMPVK-SQVSWNVMIAGYAEHSRM 216

Query: 453 ELGEQVFARVTIIGL-DSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           E      ARV   G+ D + +  TS++  YC+ G ++ + Y L Q
Sbjct: 217 EE-----ARVLFDGMGDRNVVTWTSMISGYCRAGNVQ-EGYCLFQ 255



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 16/182 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +      +  G+Q H   L K      L + N L+ MY +CG   DA  +F +M  R
Sbjct: 471 LLGAAGAMAYLDQGRQFHC-LLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISR 529

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN+MI GF   G   ++L++F  M       N  ++  ++S  + AG L     LF
Sbjct: 530 DLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELF 589

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M    AI      +  M++   R G   EA     +L        + D  I   ++G 
Sbjct: 590 DAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLP------FEPDLTIWGALLGV 643

Query: 182 CA 183
           C 
Sbjct: 644 CG 645


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 234/509 (45%), Gaps = 106/509 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
           GKQ+H  ++ + +LN    +   L+  Y +CG PT+A  LF ++  R N  +WN MI GF
Sbjct: 158 GKQIH-SYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGF 216

Query: 83  MKLGHKEKSLQLF------NVMPQKNDFSWNM---------------------------- 108
            + G  E SL+ +      NV    + F+  +                            
Sbjct: 217 GENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDP 276

Query: 109 -----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                L++ + K   +++A  +FN++P +    WN++I  YV NG+A +A+R++K++   
Sbjct: 277 YVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMK-- 334

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            +  +  D+F +  V+ + +     + G+ IH+ I+   L     + S+L+ +Y K GD 
Sbjct: 335 -LCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDS 393

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           N                       YAN         +F    +   V W S+ISG+  N 
Sbjct: 394 N-----------------------YAN--------SIFSTMKERDVVAWGSVISGFCQNR 422

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +  EAL  F  M  + V  D+  +AS++SAC+ L  ++ G  +HG   K G+  DV VAS
Sbjct: 423 KYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVAS 482

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +LLD YSK G P  A  +FS+                               MP K+L++
Sbjct: 483 SLLDMYSKFGFPERAGNIFSD-------------------------------MPLKNLVA 511

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WNS+I    +N  P  +++LF  + + DL  D  S  SV++A +++++L  G+ V   + 
Sbjct: 512 WNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLV 571

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            + +  D  +  +L+D Y KCG +K  ++
Sbjct: 572 RLWIPFDLQVENTLIDMYIKCGLLKYAQH 600



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 221/509 (43%), Gaps = 92/509 (18%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR  Y   LL++C +  ++  GK +H   +  G L+S   I + L+ +Y++CG  TDA+ 
Sbjct: 52  TRFTY-PSLLKACASLSNLQYGKTIHSSIITTG-LHSDQYITSSLINIYVKCGTFTDAVK 109

Query: 63  LFDEMPRR-----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---------------- 101
           +FD++P+      +   WN++I+G+ + G  E+ +  F  M                   
Sbjct: 110 VFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKEGKQIHSYIVRNM 169

Query: 102 ---NDFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLF 157
              + F    LI  + K G    AR LF  +  R N +AWN MI  +  NG    ++  +
Sbjct: 170 LNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYY 229

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
               ++ V+ +          + AC     + +GKQ+H   +  G + D  + +SL+ +Y
Sbjct: 230 LLAKTENVKVVSSS---FTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMY 286

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
           GKC    SA +V N + + +    +ALIS Y   G   DA R+                 
Sbjct: 287 GKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRI----------------- 329

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
                         + +M+   VL D+ T+ +VL++ S  G  + G+ +H    K  +  
Sbjct: 330 --------------YKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQS 375

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            + + SALL  YSK G  + A  +FS                               TM 
Sbjct: 376 SITIQSALLTMYSKFGDSNYANSIFS-------------------------------TMK 404

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            + +++W S+I G  QN    EALD F  M    ++ D   +AS+ISAC  +  ++LG  
Sbjct: 405 ERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCT 464

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           +   V   GL  D  +++SL+D Y K GF
Sbjct: 465 IHGFVIKSGLQLDVFVASSLLDMYSKFGF 493



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 231/514 (44%), Gaps = 106/514 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +  GKQ+H   +K G  +    +   LL MY +C     A  +F+E+P + 
Sbjct: 248 LSACGQGEFVSFGKQVHCDAIKVGFEDDPY-VHTSLLTMYGKCQMIESAEKVFNEVPDKE 306

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM--------------------------------- 98
              WNA+I  ++  G+   +L+++  M                                 
Sbjct: 307 IELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHT 366

Query: 99  -----PQKNDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                P ++  +  + L++ ++K G+   A ++F+ M  R+ +AW S+I  + +N   +E
Sbjct: 367 EIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKE 426

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+  F+ + +DLV+    D+ I+A++I AC  L  ++ G  IH  ++ +GL  D  + SS
Sbjct: 427 ALDFFRAMEADLVKP---DSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASS 483

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+++Y K G    A  + +      D  L  L++                         W
Sbjct: 484 LLDMYSKFGFPERAGNIFS------DMPLKNLVA-------------------------W 512

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           NS+IS Y  NN    ++ LF ++ RN +  D+ +  SVL+A SS+  L  GK VHG+  +
Sbjct: 513 NSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVR 572

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           + +  D+ V + L+D Y K                               CG ++ A+HI
Sbjct: 573 LWIPFDLQVENTLIDMYIK-------------------------------CGLLKYAQHI 601

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  +  K+L++WNSMI G   +G   +A++LF  M    ++ D  +  S++S+C +   +
Sbjct: 602 FERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLI 661

Query: 453 ELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG 485
           E G  +F  + +  G++       ++VD Y + G
Sbjct: 662 EEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAG 695



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I  L Q    IEAL L+    K  +   +F+  S++ ACA++S+L+ G+ + + +   GL
Sbjct: 28  IKSLVQQRQYIEALKLY---TKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 468 DSDQIISTSLVDFYCKCG 485
            SDQ I++SL++ Y KCG
Sbjct: 85  HSDQYITSSLINIYVKCG 102


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 211/448 (47%), Gaps = 77/448 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y +   P +A  +FD+M  RN  SWN ++ G++  G   ++ ++F+ MP++N  
Sbjct: 133 NSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVV 192

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSD 163
           SW  ++ G+ K G +  A TLF  MP +N ++W  M+   ++ G   EA RLF  +   D
Sbjct: 193 SWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKD 252

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGD 222
           +V R          + G C      + G+ + + +L + +   +V+  ++++  Y +   
Sbjct: 253 VVTRTN-------MIGGYC------QVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQ 299

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA------------------------- 257
            + A ++  +M E ++   +A++ GY NCG++++A                         
Sbjct: 300 VDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQN 359

Query: 258 ------RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                 R+VFD+  +     W++MI  Y     + +AL LF  M+R G+  +  +L SVL
Sbjct: 360 GEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVL 419

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           S C+ L  L+HG+++H    +     DV VAS LL  Y K                    
Sbjct: 420 SVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIK-------------------- 459

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      CG +  AK +F     K ++ WNS+I G +Q+G  +EAL +F +M+   
Sbjct: 460 -----------CGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSG 508

Query: 432 LRMDKFSLASVISACANISSLELGEQVF 459
           +  D  +   V+SAC+   +++ G ++F
Sbjct: 509 IMPDDVTFVGVLSACSYTGNVKKGLEIF 536



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 188/413 (45%), Gaps = 50/413 (12%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
            S N++I  + +LG  EK+  +F+ M  KN  SWN +++G+ +    + A+ +F+ M  R
Sbjct: 99  ISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER 158

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N I+WN ++  Y+ NG   EA  +F  +    V  +   A +   V       A   + +
Sbjct: 159 NTISWNGLVSGYINNGMINEAREVFDRMPERNV--VSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
               ++    + +  +LG  L     + G  + A ++ +MM E D    + +I GY   G
Sbjct: 217 MPEKNV----VSWTVMLGGLL-----QEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVG 267

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           ++ +AR +FD     + V W +MI+GY+ N +   A  LF  M                 
Sbjct: 268 RLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK-------------- 313

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
                                    + +  +A+L  Y+  G   +A +LF+ + +   + 
Sbjct: 314 -------------------------NEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            N MI  +   G +  A+ +F  M  K   +W++MI    + G  ++AL+LF  M +  +
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI 408

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           R +  SL SV+S CA +++L+ G ++ A++     D D  +++ L+  Y KCG
Sbjct: 409 RPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG 461



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 125/279 (44%), Gaps = 40/279 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    ++  G+++H   ++    +  + +A+ LL MY++CGN   A  +FD  
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRF 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKAGELKT 121
             ++   WN++I G+ + G   ++L++F+      +MP  +D ++  ++S  +  G +K 
Sbjct: 474 AVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMP--DDVTFVGVLSACSYTGNVKK 531

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVER--LQCDAFI 174
              +FN M  +  +      +  M+    R G   EA+        DL+E+  ++ DA I
Sbjct: 532 GLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM--------DLIEKMPMEADAII 583

Query: 175 LATVIGACADLAALEYGKQIHSHILV----NGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
              ++GAC     L+  +     +LV    N   F  +L   L N+Y   G ++   ++ 
Sbjct: 584 WGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPF--IL---LSNIYASQGRWDDVAELR 638

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
             M++         +S Y  C  +   ++V   T   SS
Sbjct: 639 RNMRD-------RRVSKYPGCSWIVVEKKVHKFTGGDSS 670



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 49/89 (55%)

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           +I  ++L+  YS+ G    A  +F E++  + I  N+++  Y    R ++A+++F  M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           ++ ISWN ++ G   NG   EA ++F  M
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRM 186


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 229/493 (46%), Gaps = 73/493 (14%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q   +FL+    ++ +   N  +  + R GN  +A  +F +M  R+  SW AMI  + + 
Sbjct: 35  QKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAEN 94

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG-ELKTARTLFNDMPRRNAIAWNSMIHCY 144
           G   K+ Q+F+ MP +   S+N +I+   K   +L  A  LF D+P +NA+++ +MI  +
Sbjct: 95  GKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGF 154

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           VR G   EA  L+ E                            +++   + S++L++G  
Sbjct: 155 VRAGRFDEAEFLYAE--------------------------TPVKFRDSVASNVLLSG-- 186

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                       Y + G +N A +V   M   +    S+++ GY   G++ DAR +FDR 
Sbjct: 187 ------------YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHG 323
           T+ + + W +MI GY       +   LF +MR+ G V  +++TLA +  AC        G
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREG 294

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
            Q+HG   ++ +  D+ + ++L+  YSK G   +A  +F  +K  D++  N++IT     
Sbjct: 295 SQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQR 354

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------------------- 412
            +I +A  +F  MP K ++SW  MI G S                               
Sbjct: 355 KQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFV 414

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
            NG   EAL  F  M + ++  + ++ +SV+SA A+++ L  G Q+  RV  + + +D  
Sbjct: 415 SNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS 474

Query: 473 ISTSLVDFYCKCG 485
           +  SLV  YCKCG
Sbjct: 475 VQNSLVSMYCKCG 487



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 209/446 (46%), Gaps = 66/446 (14%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           ++  ++R G   +A  L+ E P   R+  + N ++ G+++ G   +++++F  M  K   
Sbjct: 150 MITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVV 209

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S + ++ G+ K G +  AR+LF+ M  RN I W +MI  Y + GF  +   LF  +  + 
Sbjct: 210 SCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQE- 268

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++ ++  LA +  AC D      G QIH  +    L+FD  LG+SL+++Y K G   
Sbjct: 269 -GDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMG 327

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT------------------- 265
            A  V  +MK  D    ++LI+G     ++++A  +F++                     
Sbjct: 328 EAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGE 387

Query: 266 ------------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                       +  ++ W +MIS ++SN    EAL  FHKM +  V  ++ T +SVLSA
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +SL  L  G Q+HG   K+ +++D+ V ++L+  Y K G  +DA K+FS +   + +  
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI+                               G S NG   +AL LF  +      
Sbjct: 508 NTMIS-------------------------------GYSYNGFGKKALKLFSMLESSGKE 536

Query: 434 MDKFSLASVISACANISSLELGEQVF 459
            +  +  +++SAC ++  ++LG + F
Sbjct: 537 PNGVTFLALLSACVHVGYVDLGWKYF 562



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 167/359 (46%), Gaps = 36/359 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA + ++C        G Q+H   + +  L   L + N L+ MY + G   +A  +F  M
Sbjct: 278 LAVMFKACRDFVRYREGSQIH-GLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVM 336

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SWN++I G ++     ++ +LF  MP K+  SW  +I GF+  GE+     LF 
Sbjct: 337 KNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFG 396

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ I W +MI  +V NG+  EA+  F ++   L + +  +++  ++V+ A A LA 
Sbjct: 397 MMPEKDNITWTAMISAFVSNGYYEEALCWFHKM---LQKEVCPNSYTFSSVLSATASLAD 453

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QIH  ++   +  D  + +SLV++Y KCG+ N A ++ + + EP+    + +ISG
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISG 513

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+                                N    +AL LF  +  +G   +  T 
Sbjct: 514 YS-------------------------------YNGFGKKALKLFSMLESSGKEPNGVTF 542

Query: 308 ASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
            ++LSAC  +G+++ G K          +       + ++D   + G+  DA  L S +
Sbjct: 543 LALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM 601



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 134/278 (48%), Gaps = 8/278 (2%)

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           S ++ + + G+   A  +   M         A+IS YA  GKM+ A +VFD      +  
Sbjct: 55  SQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTS 114

Query: 272 WNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +N+MI+  I N  D  +A  LF  +      ++A + A++++     G  +  + ++   
Sbjct: 115 YNAMITAMIKNKCDLGKAYELFCDIPE----KNAVSYATMITGFVRAGRFDEAEFLYAET 170

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
                  D + ++ LL  Y + G  ++A ++F  + V + +  ++M+  Y   GRI DA+
Sbjct: 171 PVK--FRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANI 449
            +F  M  +++I+W +MI G  + G   +   LF  M +  D++++  +LA +  AC + 
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                G Q+   V+ + L+ D  +  SL+  Y K G++
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM 326


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 224/447 (50%), Gaps = 51/447 (11%)

Query: 58  TDALLLFDEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVMP-------QKNDFSWNML 109
           T  L LF E+  +  +  N  +   +K +G   K ++   V         + + +  N L
Sbjct: 12  TKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSL 71

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +  +A  G+++    +F++MP R+ ++WN +I  YV +G   +A+ +F+ ++ +    L+
Sbjct: 72  MGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRE--SNLK 129

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D   + + + AC+ L  LE G++I+ ++ V   +     G++LV+++ KCG  + A  +
Sbjct: 130 ADEGTIVSTLSACSVLKNLEIGERIYRYV-VTEFEMSVRTGNALVDMFCKCGCLDKARAI 188

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
            + M++ +  C ++++SGY + G+ ++AR +F+R+     V+W +M++GY+  N   EAL
Sbjct: 189 FDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEAL 248

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF  M+   +  D   L S+L+ C+  G LE GK +HG+  +  V  D +V +AL+D Y
Sbjct: 249 ELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMY 308

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +K G    A  +F E+K  DT                                SW S+I 
Sbjct: 309 AKCGCIETALGVFYEMKERDT-------------------------------ASWTSLIY 337

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           GL+ NG    ALDL+  M  + +R+D  +  +V++AC++   +  G ++F  +T    + 
Sbjct: 338 GLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMT----ER 393

Query: 470 DQIISTS-----LVDFYCKCGFIKMDE 491
            +I   S     L+D  C+ G +   E
Sbjct: 394 HKIQPKSEHYSCLIDLLCRAGLLDEAE 420



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 195/497 (39%), Gaps = 138/497 (27%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+S      +  G+++H + +K G L S   + N L+ MY   G       +FDEM
Sbjct: 33  LPVVLKSIGRLRKVIEGEKVHGYAVKTG-LESDSYVCNSLMGMYAALGKMEITHKVFDEM 91

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF----------------------- 104
           P R+  SWN +I  ++  G  E ++ +F  M ++++                        
Sbjct: 92  PERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLKNLEIG 151

Query: 105 ----------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                           + N L+  F K G L  AR +F+ M  +N   W SM+  YV NG
Sbjct: 152 ERIYRYVVTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNG 211

Query: 149 FAREAVRLFKELN-SDLV---------------------------ERLQCDAFILATVIG 180
              EA  LF+     D+V                            R++ D F+L +++ 
Sbjct: 212 RTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLT 271

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            CA   ALE GK IH +I  N +  D V+G++LV++Y KCG   +A  V   MKE D   
Sbjct: 272 GCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERD--- 328

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                                       +  W S+I G  +N     AL L+++M   GV
Sbjct: 329 ----------------------------TASWTSLIYGLATNGMSGRALDLYYEMENVGV 360

Query: 301 LEDASTLASVLSACSSLGFLEHGKQV-----HGHA---------------CKVGVIDD-- 338
             D  T  +VL+ACS  GF+  G+++       H                C+ G++D+  
Sbjct: 361 RLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAE 420

Query: 339 --------------VIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
                         V V  +LL     Y    +     +   +++V D+     + +VY+
Sbjct: 421 ELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYA 480

Query: 382 SCGRIEDAKHIFRTMPN 398
           S  R ED  ++ R M +
Sbjct: 481 SANRWEDVTNVRRKMKD 497


>gi|255557445|ref|XP_002519753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541170|gb|EEF42726.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 562

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 216/438 (49%), Gaps = 44/438 (10%)

Query: 30  HFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89
            FL   I +    +   ++  Y R G   DAL+LFD M  R+  SWN+MI+G +  G   
Sbjct: 128 RFLFAKIPSPEAYLCTLMINGYARSGRLNDALMLFDRMTVRDIISWNSMIKGCLDCGDLG 187

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
            + +LF+ MP++N  SW  +++G+ K G ++ A   F DMP R+  AWN+MI  Y  N  
Sbjct: 188 MARRLFDEMPERNVVSWTTMVNGYLKFGRVEIAERFFWDMPVRDVAAWNAMIFGYCGNRR 247

Query: 150 AREAVRLFKELNSDLVERLQCDAFI-LATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             + + LF        E++ C   I   ++IG        E    +   ++ +G+   S 
Sbjct: 248 IADGLNLF--------EKMPCRNVISWTSMIGGLDQNGKSEEALILFGKMMDSGVKPTST 299

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRT 264
             + ++       DFN   QV   + +     D+F  ++LI+ Y+NC ++ +A +VF+ T
Sbjct: 300 TYACVLTACANAMDFNMGVQVHGRVSKLGYKSDEFISASLITFYSNCKQVKNAHQVFNET 359

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
              + V+W ++++G   N++  +AL +F  M + GV  + ST  S  ++C  L  L+ GK
Sbjct: 360 LSKNVVIWTALLTGCELNSKHEDALRVFSDMIKMGVFPNQSTFISAFNSCRGLEALDRGK 419

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H    K+G+  DV V ++L+  Y++ G  +DA  +F ++K                  
Sbjct: 420 EIHTVTAKLGLETDVFVGNSLVVMYNECGNVNDAVAVFKKIK------------------ 461

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                         K+ +SWNS+IVG SQ+G  I AL  F  M +  +  D+ +L  ++S
Sbjct: 462 -------------EKNDVSWNSIIVGSSQHGHGIWALIFFNQMIRTCVDPDEITLTGLLS 508

Query: 445 ACANISSLELGEQVFARV 462
           AC++   L+ G + F  +
Sbjct: 509 ACSHSGMLQKGRRFFQYI 526



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 184/412 (44%), Gaps = 73/412 (17%)

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
           S+  ++   +K    +++  LF  +P    +   ++I+G+A++G L  A  LF+ M  R+
Sbjct: 110 SYRDLLSDLLKNQKLDQARFLFAKIPSPEAYLCTLMINGYARSGRLNDALMLFDRMTVRD 169

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            I+WNSMI   +  G    A RLF E+     ER                          
Sbjct: 170 IISWNSMIKGCLDCGDLGMARRLFDEMP----ER-------------------------- 199

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
                       + V  +++VN Y K G    A +    M   D    +A+I GY    +
Sbjct: 200 ------------NVVSWTTMVNGYLKFGRVEIAERFFWDMPVRDVAAWNAMIFGYCGNRR 247

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           + D   +F++    + + W SMI G   N +  EAL+LF KM  +GV   ++T A VL+A
Sbjct: 248 IADGLNLFEKMPCRNVISWTSMIGGLDQNGKSEEALILFGKMMDSGVKPTSTTYACVLTA 307

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C++      G QVHG   K+G   D  ++++L                            
Sbjct: 308 CANAMDFNMGVQVHGRVSKLGYKSDEFISASL---------------------------- 339

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
              IT YS+C ++++A  +F    +K+++ W +++ G   N    +AL +F +M K+ + 
Sbjct: 340 ---ITFYSNCKQVKNAHQVFNETLSKNVVIWTALLTGCELNSKHEDALRVFSDMIKMGVF 396

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++ +  S  ++C  + +L+ G+++      +GL++D  +  SLV  Y +CG
Sbjct: 397 PNQSTFISAFNSCRGLEALDRGKEIHTVTAKLGLETDVFVGNSLVVMYNECG 448



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 118/256 (46%), Gaps = 39/256 (15%)

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           +  P+ +  + +I+GYA  G++NDA  +FDR T    + WNSMI G +   +   A  LF
Sbjct: 134 IPSPEAYLCTLMINGYARSGRLNDALMLFDRMTVRDIISWNSMIKGCLDCGDLGMARRLF 193

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            +M                                          +V+  + +++ Y K 
Sbjct: 194 DEMPER---------------------------------------NVVSWTTMVNGYLKF 214

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G    A + F ++ V D    N MI  Y    RI D  ++F  MP +++ISW SMI GL 
Sbjct: 215 GRVEIAERFFWDMPVRDVAAWNAMIFGYCGNRRIADGLNLFEKMPCRNVISWTSMIGGLD 274

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           QNG   EAL LF  M    ++    + A V++ACAN     +G QV  RV+ +G  SD+ 
Sbjct: 275 QNGKSEEALILFGKMMDSGVKPTSTTYACVLTACANAMDFNMGVQVHGRVSKLGYKSDEF 334

Query: 473 ISTSLVDFYCKCGFIK 488
           IS SL+ FY  C  +K
Sbjct: 335 ISASLITFYSNCKQVK 350



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
             SC    ++  GK++H    K G L + + + N L+ MY  CGN  DA+ +F ++  +N
Sbjct: 406 FNSCRGLEALDRGKEIHTVTAKLG-LETDVFVGNSLVVMYNECGNVNDAVAVFKKIKEKN 464

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN++I G  + GH   +L  FN M +     ++ +   L+S  + +G L+  R  F 
Sbjct: 465 DVSWNSIIVGSSQHGHGIWALIFFNQMIRTCVDPDEITLTGLLSACSHSGMLQKGRRFFQ 524

Query: 128 DMPRRNAIAWNSMIHCYVRN 147
            + R   +      +C V+N
Sbjct: 525 YIHRITKLQNKKPGNCQVKN 544


>gi|147841850|emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 226/467 (48%), Gaps = 71/467 (15%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           L   N+ +   +R G   +A  LFD MP+RN  +WN+MI G+++     K+ +LF+ MP 
Sbjct: 67  LYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPD 126

Query: 101 KNDFSWNMLISGFA--KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           ++  SWN++ISG+   +   ++  R LF++MP R+ ++WN+MI  Y R+G   EA++LF 
Sbjct: 127 RDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFD 186

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
            +    V  +  +A +   +     +  A+E+  ++           DS   S+LV    
Sbjct: 187 SMQERNV--VSWNAMVTGFLQNGDVE-RAIEFFMRMPER--------DSASLSALVAGLI 235

Query: 219 KCGDFNSANQVLNMMKEPDD------FCLSALISGYANCGKMNDARRVFDRTT------- 265
           + G+ + A ++L   +  DD         + L++GY   G+++ AR++FD+         
Sbjct: 236 QNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQK 295

Query: 266 -----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
                + + V WNSMI  Y+   +   A +LF +M+                        
Sbjct: 296 DGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKER---------------------- 333

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
                            D I  + ++  Y +     +A  LF E+   DT+  N+MI+ +
Sbjct: 334 -----------------DTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGF 376

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +  G +E A+ +F T+P K+L+SWNSMI G   NG    A +L+  M     + D+ +L+
Sbjct: 377 AQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLS 436

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           SV+S C+  ++L LG Q+  ++T   +  D  I+ SL+  Y +CG I
Sbjct: 437 SVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAI 482



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 225/520 (43%), Gaps = 117/520 (22%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK--EKSLQLFNVMPQKN 102
           N ++  Y+R      A  LFDEMP R+  SWN MI G++    +  E+   LF+ MP+++
Sbjct: 102 NSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERD 161

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             SWN +ISG+ ++G +  A  LF+ M  RN ++WN+M+  +++NG    A+  F     
Sbjct: 162 CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMR--- 218

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQI---------------HSH-ILVNGLD-- 204
            + ER   D+  L+ ++        L+  K+I               H++ IL+ G    
Sbjct: 219 -MPER---DSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQN 274

Query: 205 ---------FDS------------------VLGSSLVNLYGKCGDFNSANQVLNMMKE-- 235
                    FD                   V  +S++  Y K  D  SA  + + MKE  
Sbjct: 275 GRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERD 334

Query: 236 -----------------------------PDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                        PD    +++ISG+A  G +  AR +F     
Sbjct: 335 TISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQ 394

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V WNSMI+GY +N +   A  L+ +M   G   D  TL+SVLS CS    L  G Q+
Sbjct: 395 KNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQI 454

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    K  VI D+ + ++L+  YS+ G   +A  +F E+K+                   
Sbjct: 455 HQQITKT-VIPDIPINNSLITMYSRCGAIVEARTIFDEVKL------------------- 494

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                       K +ISWN+MI G + +G   +AL+LF  M +L +R    +  SV++AC
Sbjct: 495 -----------QKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNAC 543

Query: 447 ANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG 485
           A+   ++ G   F  +    G++       SLVD   + G
Sbjct: 544 AHAGXVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHG 583



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 37/323 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y++  +   A +LFD+M  R+  SWN MI G++++   E++  LF  MP  +  
Sbjct: 308 NSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTL 367

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN +ISGFA+ G L+ AR LF  +P++N ++WNSMI  Y  NG  + A  L++++   L
Sbjct: 368 TWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQM---L 424

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           ++  + D   L++V+  C+  AAL  G QIH  I    +  D  + +SL+ +Y +CG   
Sbjct: 425 LQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP-DIPINNSLITMYSRCGAIV 483

Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            A  + + +K + +    +A+I GYA  G   D                           
Sbjct: 484 EARTIFDEVKLQKEVISWNAMIGGYAFHGFAAD--------------------------- 516

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVA 342
               AL LF  M+R  V     T  SVL+AC+  G ++ G+      AC+ G+   +   
Sbjct: 517 ----ALELFELMKRLKVRPTYITFISVLNACAHAGXVKEGRMHFKSMACEFGIEPRIEHF 572

Query: 343 SALLDTYSKRGMPSDACKLFSEL 365
           ++L+D   + G   +A  L + +
Sbjct: 573 ASLVDIVGRHGQLEEAMDLINSM 595



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 22/187 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C+   ++H+G Q+H    K  I +  +PI N L+ MY RCG   +A  +FDE+
Sbjct: 435 LSSVLSVCSGFAALHLGMQIHQQITKTVIPD--IPINNSLITMYSRCGAIVEARTIFDEV 492

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTA 122
             ++   SWNAMI G+   G    +L+LF +M     +    ++  +++  A AG +K  
Sbjct: 493 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGXVKEG 552

Query: 123 RTLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           R  F  M       PR    A  S++    R+G   EA+ L   +        + D  + 
Sbjct: 553 RMHFKSMACEFGIEPRIEHFA--SLVDIVGRHGQLEEAMDLINSMP------FEPDKAVW 604

Query: 176 ATVIGAC 182
             ++GAC
Sbjct: 605 GALLGAC 611


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 241/517 (46%), Gaps = 86/517 (16%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC--FSWNAMIEGF 82
           K +H   L  GIL  TL + + L+  Y+  G  + A+ L    P  +   + WN++I  +
Sbjct: 45  KLIHQKLLSFGIL--TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSY 102

Query: 83  MKLGHKEKSLQLFNVMPQ---------------------------------------KND 103
              G   K L LF +M                                          N 
Sbjct: 103 GDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNV 162

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N L++ +++   L  AR +F++M   + ++WNS+I  Y + G  + A+ +F  + ++
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE 222

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
              R   D   L  V+  CA L     GKQ+H   + + +  +  +G+ LV++Y KCG  
Sbjct: 223 FGCRP--DNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGY 279
           + AN V + M   D    +A+++GY+  G+  DA R+F++  +       V W++ ISGY
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
                  EAL +  +M  +G+  +  TL SVLS C+S+G L HGK++H +A K  +    
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPI---- 396

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
                      K G               + +++N +I +Y+ C +++ A+ +F ++  K
Sbjct: 397 --------DLRKNGHGD------------ENMVINQLIDMYAKCKKVDTARAMFDSLSPK 436

Query: 400 S--LISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELG 455
              +++W  MI G SQ+G   +AL+L   M + D   R + F+++  + ACA++++L +G
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496

Query: 456 EQVFARVTIIGLDSDQ-----IISTSLVDFYCKCGFI 487
           +Q+ A      L + Q      +S  L+D Y KCG I
Sbjct: 497 KQIHA----YALRNQQNAVPLFVSNCLIDMYAKCGSI 529



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 172/405 (42%), Gaps = 93/405 (22%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           +N F  N +++ + K G  +++  +F+ M  K+  SWN +++G+++ G  + A  LF  M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321

Query: 130 P----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
                + + + W++ I  Y + G   EA+ + +++   L   ++ +   L +V+  CA +
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM---LSSGIKPNEVTLISVLSGCASV 378

Query: 186 AALEYGKQIHSHILVNGLDF-------DSVLGSSLVNLYGKC------------------ 220
            AL +GK+IH + +   +D        ++++ + L+++Y KC                  
Sbjct: 379 GALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKER 438

Query: 221 ---------------GDFNSANQVLNMMKE------PDDFCLSA---------------- 243
                          GD N A ++L+ M E      P+ F +S                 
Sbjct: 439 DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQ 498

Query: 244 --------------------LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                               LI  YA CG ++DAR VFD     + V W S+++GY  + 
Sbjct: 499 IHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHG 558

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVA 342
              EAL +F +MRR G   D  TL  VL ACS  G ++ G +       V GV       
Sbjct: 559 YGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHY 618

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           + L+D   + G  + A +L  E+ +    ++      + SC RI 
Sbjct: 619 ACLVDLLGRAGRLNAALRLIEEMPMEPPPVV---WVAFLSCCRIH 660



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 36/253 (14%)

Query: 242 SALISGYANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
           S LIS Y + G ++ A  +  R   +D     WNS+I  Y  N    + L LF  M    
Sbjct: 63  SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS 122

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              D  T   V  AC  +  +  G+  H  +   G I +V V +AL              
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNAL-------------- 168

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                            + +YS C  + DA+ +F  M    ++SWNS+I   ++ G P  
Sbjct: 169 -----------------VAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV 211

Query: 420 ALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           AL++F  M N+   R D  +L +V+  CA++ +  LG+Q+        +  +  +   LV
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271

Query: 479 DFYCKCGFIKMDE 491
           D Y KCG   MDE
Sbjct: 272 DMYAKCGM--MDE 282



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 107/234 (45%), Gaps = 18/234 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C +  ++ +GKQ+H + L+       L ++N L+ MY +CG+ +DA L+FD M  +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-----MLISGFAKAGELKTARTLF 126
             +W +++ G+   G+ E++L +F+ M ++  F  +     +++   + +G +      F
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEM-RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M     ++     +  ++    R G    A+RL +E+       ++    +    +  
Sbjct: 603 NRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMP------MEPPPVVWVAFLSC 656

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     +E G+     I     + D    + L NLY   G +    ++ ++M+ 
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSY-TLLSNLYANAGRWKDVTRIRSLMRH 709



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 359 CKLFSELKVYDTILLN----------TMITVYSSCGRIEDAKHIFRTMP--NKSLISWNS 406
           CK  S++K+    LL+           +I+ Y S G +  A  + R  P  +  +  WNS
Sbjct: 38  CKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           +I     NG   + L LF  M+ L    D ++   V  AC  ISS+  GE   A   + G
Sbjct: 98  LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157

Query: 467 LDSDQIISTSLVDFYCKC 484
             S+  +  +LV  Y +C
Sbjct: 158 FISNVFVGNALVAMYSRC 175


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 211/451 (46%), Gaps = 83/451 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y R     DA +LFD MP ++  SWNAM+ G+++ GH +++  +F+ MP KN  
Sbjct: 99  NLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSI 158

Query: 105 SWNMLISGFAKAGELKTAR-------------------------------TLFNDMPRRN 133
           SWN L++ + ++G L+ AR                                LF+ +P R+
Sbjct: 159 SWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRD 218

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA-----AL 188
            I+WN+MI  Y ++G   +A RLF+E  S + +     A + A V     D A      +
Sbjct: 219 LISWNTMISGYAQDGDLSQARRLFEE--SPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
              +++  ++++ G              Y +    +   ++   M  P+    + +ISGY
Sbjct: 277 PQKREMSYNVMIAG--------------YAQYKRMDMGRELFEEMPFPNIGSWNIMISGY 322

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
              G +  AR +FD      SV W ++I+GY  N    EA+ +  +M+R+G   + ST  
Sbjct: 323 CQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFC 382

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
             LSAC+ +  LE GKQVHG   + G     +V +AL+  Y K                 
Sbjct: 383 CALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCK----------------- 425

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG I++A  +F+ + +K ++SWN+M+ G +++G   +AL +F +M 
Sbjct: 426 --------------CGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMI 471

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVF 459
              ++ D+ ++  V+SAC++    + G + F
Sbjct: 472 TAGVKPDEITMVGVLSACSHTGLTDRGTEYF 502



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 39/284 (13%)

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V + M   +    +A+ISGY    K + AR +FD+        WN M++GY  N    +A
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDA 114

Query: 289 LLLFHKMR---------------RNGVLEDAS------------TLASVLSACSSLGFLE 321
            +LF  M                R+G +++A             +   +L+A    G LE
Sbjct: 115 RMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLE 174

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
             +++           ++I  + L+  Y KR M  DA +LF ++ V D I  NTMI+ Y+
Sbjct: 175 EARRLFESKSDW----ELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYA 230

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             G +  A+ +F   P + + +W +M+    Q+G   EA  +F  M +      + S   
Sbjct: 231 QDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQ----KREMSYNV 286

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +I+  A    +++G ++F  +    + S  I    ++  YC+ G
Sbjct: 287 MIAGYAQYKRMDMGRELFEEMPFPNIGSWNI----MISGYCQNG 326



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   ++ G     L + N L+ MY +CG   +A  +F  +  ++
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCL-VGNALVGMYCKCGCIDEAYDVFQGVQHKD 443

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN M+ G+ + G   ++L +F  M     + ++ +   ++S  +  G        F+
Sbjct: 444 IVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFH 503

Query: 128 DMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   I  NS     MI    R G   EA  L + +        + DA     ++GA 
Sbjct: 504 SMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMP------FEPDAATWGALLGAS 557

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                +E G+Q  + ++      +S +   L NLY   G +   +++   M++
Sbjct: 558 RIHGNMELGEQA-AEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQ 609


>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
 gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
          Length = 836

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 220/508 (43%), Gaps = 101/508 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+  + +  GK++H  ++        + +   L+ MY +CG+P DA  +FD M R+
Sbjct: 130 VLGACSYQNELPFGKKVHA-YISASEFKWDISLQTSLVNMYAKCGSPADAKAVFDSMARK 188

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQ---LFNVMPQKNDFS---------------------- 105
           +  +WNAM    +  G   K L+   L  V P    ++                      
Sbjct: 189 DIVTWNAMAGASVHNGQSHKLLREMDLQGVKPNATTYASITRGSSTLTGCRAMEQRLLAS 248

Query: 106 --------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
                    N L++ +AK G+L+ AR +FN + R++ I+W++MI  Y ++G   EA+ ++
Sbjct: 249 GYMSHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIY 308

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
           + + S+    ++ +A     VIGAC     +  G Q+H  ++  GL              
Sbjct: 309 RLMESET--SVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGL-------------- 352

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                            E D    SAL+  Y  CG + DA++ FDR      + WN M+S
Sbjct: 353 -----------------ETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLS 395

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
            Y       + +  +  M    V  +A T  +VL ACS++  L  G++VH      G+  
Sbjct: 396 AYSERGSPQQVIEAYEAM---DVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLET 452

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D+ + +ALL  Y K                               C  ++ A  +F  M 
Sbjct: 453 DMTMETALLSLYIK-------------------------------CRSLKSACQVFEAMG 481

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            K +I WN M+VG   +    EAL L+  M++  +  +  + A+ + AC+ I  +E G +
Sbjct: 482 KKDVIPWNFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSK 541

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCG 485
           V A +T  G ++D +  T+L++ Y  CG
Sbjct: 542 VEAMITTKGFETDVVTDTALLNMYAACG 569



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/506 (22%), Positives = 225/506 (44%), Gaps = 111/506 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           + +    L  G + S +P+ N L+ +Y +CG+   A  +F+ + R++  SW+ MI  + +
Sbjct: 239 RAMEQRLLASGYM-SHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQ 297

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNM------------------------------------ 108
            G   ++++++ +M  +     N                                     
Sbjct: 298 SGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVA 357

Query: 109 ----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
               L+  + K G L+ A+  F+ + +R+ + WN M+  Y   G  ++ +  ++ ++   
Sbjct: 358 VGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAMD--- 414

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++ +A     V+ AC+ +  L  G+++HS I+ +GL+ D  + ++L++LY K     
Sbjct: 415 ---VEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIK----- 466

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                     C  +  A +VF+       + WN M+ GYI ++ 
Sbjct: 467 --------------------------CRSLKSACQVFEAMGKKDVIPWNFMMVGYIDHDC 500

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           DTEAL L+ +M   GV  +  T A+ L ACS +  +E G +V                 A
Sbjct: 501 DTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVE----------------A 544

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF--RTMPNKSLI 402
           ++ T   +G  +D         V DT LLN    +Y++CG +E AK +F  R    + ++
Sbjct: 545 MITT---KGFETDV--------VTDTALLN----MYAACGDLEAAKRVFGSRRGERRDVV 589

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
            W +MI   +Q G   EAL L+  M   +++ +  +  SV+SAC+++ ++  G ++ +++
Sbjct: 590 FWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKL 649

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIK 488
                + D  +  SL+  Y +CG ++
Sbjct: 650 EGKAEELDVAVQNSLLSMYARCGSLR 675



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/517 (23%), Positives = 221/517 (42%), Gaps = 116/517 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C     + V   L+  F   G L++     N L+Q++ + GN   +  +FD M ++
Sbjct: 32  LLQQCQDSGELDV---LYARFTGTGYLDNVY-FRNWLIQLHGKFGNTQKSREVFDGMQQK 87

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           N +SW+ MI  + + GH+ ++  LF  M  +                             
Sbjct: 88  NVYSWSMMIGAYAQNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGKKVH 147

Query: 102 -----NDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                ++F W++     L++ +AK G    A+ +F+ M R++ + WN+M    V NG   
Sbjct: 148 AYISASEFKWDISLQTSLVNMYAKCGSPADAKAVFDSMARKDIVTWNAMAGASVHNG--- 204

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           ++ +L +E++   ++ ++ +A   A++    + L      + +   +L +G      + +
Sbjct: 205 QSHKLLREMD---LQGVKPNATTYASITRGSSTLTGC---RAMEQRLLASGYMSHVPVQN 258

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LVN+Y KCGD   A +V N ++  D    S +IS Y   G+ ++A  ++      +SV 
Sbjct: 259 ALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVE 318

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
            N                              A T   V+ AC+  G +  G QVHG   
Sbjct: 319 PN------------------------------AVTFVGVIGACTGCGDVIRGIQVHGRLV 348

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
            +G+  DV V SAL+  Y K G   DA K F  ++  D +  N M++ Y           
Sbjct: 349 SLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAY----------- 397

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                               S+ GSP + ++ +     +D+  +  +  +V+ AC+ +  
Sbjct: 398 --------------------SERGSPQQVIEAY---EAMDVEPNAVTYTNVLIACSAMED 434

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           L  G++V +R+   GL++D  + T+L+  Y KC  +K
Sbjct: 435 LAQGQKVHSRIVSSGLETDMTMETALLSLYIKCRSLK 471



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 205/492 (41%), Gaps = 104/492 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C     +  G Q+H   +  G L + + + + L+QMY++CG+  DA   FD + +R
Sbjct: 327 VIGACTGCGDVIRGIQVHGRLVSLG-LETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKR 385

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP-QKNDFSWN---------------------- 107
           +   WN M+  + + G  ++ ++ +  M  + N  ++                       
Sbjct: 386 DVLCWNFMLSAYSERGSPQQVIEAYEAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHSRI 445

Query: 108 -------------MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                         L+S + K   LK+A  +F  M +++ I WN M+  Y+ +    EA+
Sbjct: 446 VSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYIDHDCDTEAL 505

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           RL+  ++   VE    +    A  + AC+ +  +E G ++ + I   G + D V  ++L+
Sbjct: 506 RLYARMHEAGVE---ANNVTFANALKACSKIKDIETGSKVEAMITTKGFETDVVTDTALL 562

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD--RTTDTSSVMW 272
           N+Y                               A CG +  A+RVF   R      V W
Sbjct: 563 NMY-------------------------------AACGDLEAAKRVFGSRRGERRDVVFW 591

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
            +MI+ Y       EAL L+  M    +  ++ T  SVLSACSSLG +  G+++H     
Sbjct: 592 TAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHS---- 647

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
                                      KL  + +  D  + N+++++Y+ CG + DA   
Sbjct: 648 ---------------------------KLEGKAEELDVAVQNSLLSMYARCGSLRDAWSC 680

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  + N+ + SW  M+   + +G    AL+L   M    +  D  +  SV+ AC++  SL
Sbjct: 681 FAKIHNRDVFSWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLHACSHEGSL 740

Query: 453 ELGEQVFARVTI 464
           E G   F  + +
Sbjct: 741 ERGWASFVSMAV 752



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 45/225 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  L++C+    I  G ++      KG   + +     LL MY  CG+   A  +F   
Sbjct: 523 FANALKACSKIKDIETGSKVEAMITTKG-FETDVVTDTALLNMYAACGDLEAAKRVFGSR 581

Query: 68  --PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS-------------- 105
              RR+   W AMI  + + G  E++L L+  M      P    ++              
Sbjct: 582 RGERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILE 641

Query: 106 -------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N L+S +A+ G L+ A + F  +  R+  +W  M+  +  
Sbjct: 642 GRKIHSKLEGKAEELDVAVQNSLLSMYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAH 701

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +G +  A+ L +E+    +  +  DA    +V+ AC+   +LE G
Sbjct: 702 HGHSARALELVREME---LCGVSPDAVTFQSVLHACSHEGSLERG 743


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 216/487 (44%), Gaps = 120/487 (24%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G    A  LF+EMP RN  SWNAM+ G++  GH EK+++ F +MP+++  
Sbjct: 156 NTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSA 215

Query: 105 S------------------------------------WNMLISGFAKAGELKTARTLFND 128
           S                                    +N LI+G+ + G    AR LF+ 
Sbjct: 216 SLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDR 275

Query: 129 MP--------RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           +P        RRN I+WNSMI CYVR G    A  LF ++    VER   D F   T+I 
Sbjct: 276 IPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKM----VER---DTFSWNTMIS 328

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
                                               Y +  D   A+ + + M EPD   
Sbjct: 329 G-----------------------------------YVQILDMKEASNLFSRMPEPDTLS 353

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + +ISG++  G +  A  +F R  + S V WNSMISGY  N +   A+ +F +M+  G 
Sbjct: 354 WNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGK 413

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  TL+S+LSAC+ L  L  G Q+H                                +
Sbjct: 414 KPDRHTLSSILSACAGLVDLVLGTQIH--------------------------------Q 441

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIE 419
           L ++  + D  + N+++T+YS CG I +A+ +F  M   + +ISWN+MI G + +G   E
Sbjct: 442 LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATE 501

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLV 478
           AL LF  M + +++    +  SV++ACA+   +E G + F + V   G+        +LV
Sbjct: 502 ALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALV 561

Query: 479 DFYCKCG 485
           D   + G
Sbjct: 562 DIIGRHG 568



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 68/459 (14%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N+ +   +R G   +A  LFD     N  +WN MI  ++K     K+ QLF  MP ++  
Sbjct: 61  NKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIV 120

Query: 105 SWNMLISGFAKAGE--LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           SWN+++SG+   G   ++ AR +F+ MP  + ++WN+M+  Y ++G   +A  LF E+  
Sbjct: 121 SWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPE 180

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSH------ILVNGLDFDSVLGSSLVNL 216
             V  +  +A +   ++    +  A+E+ K +          LV+GL  +  L  +   L
Sbjct: 181 RNV--VSWNAMVSGYLMNGHVE-KAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERIL 237

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT--------TDTS 268
               G+    + V       D +  + LI+GY   G   +AR++FDR         +  +
Sbjct: 238 LQYGGNVGKGDLV-------DAY--NTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRN 288

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + WNSMI  Y+   +   A  LF KM    V  D  +  +++S     G+++       
Sbjct: 289 VISWNSMIMCYVRAGDIVSARELFDKM----VERDTFSWNTMIS-----GYVQ------- 332

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                           +LD         +A  LFS +   DT+  N MI+ +S  G ++ 
Sbjct: 333 ----------------ILDM-------KEASNLFSRMPEPDTLSWNMMISGFSEIGSLKL 369

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F+ +P KSL+SWNSMI G  +N     A+++F  M     + D+ +L+S++SACA 
Sbjct: 370 AHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAG 429

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  L LG Q+   VT     +D  I+ SLV  Y +CG I
Sbjct: 430 LVDLVLGTQIHQLVT-KAFIADLPINNSLVTMYSRCGAI 467



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 37/323 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R G+   A  LFD+M  R+ FSWN MI G++++   +++  LF+ MP+ +  
Sbjct: 293 NSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTL 352

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWNM+ISGF++ G LK A  LF  +P ++ ++WNSMI  Y +N   + A+ +F ++    
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQ--- 409

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +E  + D   L++++ ACA L  L  G QIH  ++      D  + +SLV +Y +CG   
Sbjct: 410 LEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSRCGAIV 468

Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            A  V + M  + D    +A+I GYA  G                               
Sbjct: 469 EARMVFDEMNLQRDVISWNAMIGGYAYHGFA----------------------------- 499

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVA 342
             TEAL LF  M++  V     T  SVL+AC+  G +E G++         G+   V   
Sbjct: 500 --TEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHY 557

Query: 343 SALLDTYSKRGMPSDACKLFSEL 365
           +AL+D   + G   +A  L + +
Sbjct: 558 AALVDIIGRHGQLEEAMSLINSM 580



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%), Gaps = 17/265 (6%)

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           N  + P+ + L+  IS     G++N+AR +FD T   +++ WN MI+ Y+   E  +A  
Sbjct: 50  NSFQVPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQ 109

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF +M    ++     L+  +S      F+E  + +     +     D +  + +L  Y+
Sbjct: 110 LFEEMPNRDIVSWNLMLSGYISCGGK--FVERARNMFDQMPET----DCVSWNTMLSGYA 163

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G    A +LF+E+   + +  N M++ Y   G +E A   F+ MP +   S  +++ G
Sbjct: 164 KSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSG 223

Query: 411 LSQNGSPIEA----LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-- 464
           L QN   +EA    L    N+ K DL +D ++  ++I+            ++F R+ +  
Sbjct: 224 LIQNDKLVEAERILLQYGGNVGKGDL-VDAYN--TLIAGYGQKGMAYEARKLFDRIPLCC 280

Query: 465 -IGLDSDQIIS-TSLVDFYCKCGFI 487
             G     +IS  S++  Y + G I
Sbjct: 281 DCGYSRRNVISWNSMIMCYVRAGDI 305



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C     + +G Q+H    K  I  + LPI N L+ MY RCG   +A ++FDEM
Sbjct: 420 LSSILSACAGLVDLVLGTQIHQLVTKAFI--ADLPINNSLVTMYSRCGAIVEARMVFDEM 477

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLIS---GFAKAGELKTA 122
             +R+  SWNAMI G+   G   ++LQLF++M Q N   S+   IS     A AG ++  
Sbjct: 478 NLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEG 537

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           R  FN M   + I      + +++    R+G   EA+ L   +        + D  +   
Sbjct: 538 RREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPC------EPDKAVWGA 591

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           ++GAC     +E  +     ++   L  +S     L+ N+Y   G ++ A ++  MM++
Sbjct: 592 LLGACKVHNNVEMARAAAEALM--KLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEK 648


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 230/468 (49%), Gaps = 43/468 (9%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+QLH   LK G+ ++T  I N L+ MY + G+  DA L                     
Sbjct: 288 GRQLHSLVLKLGLHSNTF-IQNSLINMYAKRGSIKDAQL--------------------- 325

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                     LF+  P  N  S N+++ G+AKAG+L  AR LF+ MP +  +++ +MI  
Sbjct: 326 ----------LFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMG 375

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS---HILV 200
            V+N   REA+ +FK++ SD V     +   L  VI AC+    +   + IH+    + V
Sbjct: 376 LVQNECFREALEVFKDMRSDGVVP---NDLTLVNVIYACSHFGEILNCRMIHAIAIKLFV 432

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            GL    ++ ++L+  Y  C     A ++ + M E +    + +++GYA  G ++ AR +
Sbjct: 433 EGL---VLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMAREL 489

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F+R  D   + W +MI GYI  N   EAL+++  M R+G+  +   + +++SAC  L  +
Sbjct: 490 FERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAI 549

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI-LLNTMITV 379
             G Q+HG   K G      + + ++  Y+  GM   AC  F E+   D +   N +++ 
Sbjct: 550 GDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQF-EVGAKDHLESWNALVSG 608

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           +     ++ A+ IF  MP + + SW++MI G +Q      AL+LF  M    ++ ++ ++
Sbjct: 609 FIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTM 668

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            SV SA A + +L+ G      +    +  +  +  +L+D Y KCG I
Sbjct: 669 VSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSI 716



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 190/372 (51%), Gaps = 36/372 (9%)

Query: 90  KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
           ++ +LF+ MP+ N  SWN++++G+AKAG +  AR LF  +P ++ I+W +MI  Y+    
Sbjct: 454 EARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNR 513

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA+ +++ +   L   L  +  ++  ++ AC  L A+  G Q+H  ++  G D  + +
Sbjct: 514 LHEALVMYRAM---LRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFI 570

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            +++++ Y  CG  + A     +  +      +AL+SG+     ++ AR++FD   +   
Sbjct: 571 QTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDV 630

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             W++MISGY   ++   AL LFHKM  +G+  +  T+ SV SA ++LG L+ G+  H +
Sbjct: 631 FSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEY 690

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
            C   +  +  + +AL+D Y+K                               CG I  A
Sbjct: 691 ICNESIPLNDNLRAALIDMYAK-------------------------------CGSINSA 719

Query: 390 KHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
              F  + +K  S+  WN++I GL+ +G     LD+F +M + +++ +  +   V+SAC 
Sbjct: 720 LQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACC 779

Query: 448 NISSLELGEQVF 459
           +   +E G ++F
Sbjct: 780 HAGLVEPGRRIF 791



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 168/313 (53%), Gaps = 6/313 (1%)

Query: 183 ADLAALEY------GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           A ++AL+Y      G+Q+HS +L  GL  ++ + +SL+N+Y K G    A  + +     
Sbjct: 274 ALVSALKYCSSSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTL 333

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           +    + ++ GYA  G++++AR++FD   D   V + +MI G + N    EAL +F  MR
Sbjct: 334 NPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMR 393

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
            +GV+ +  TL +V+ ACS  G + + + +H  A K+ V   V+V++ L+  Y       
Sbjct: 394 SDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVG 453

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           +A +LF  +   + +  N M+  Y+  G ++ A+ +F  +P+K +ISW +MI G      
Sbjct: 454 EARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNR 513

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             EAL ++  M +  L +++  + +++SAC  ++++  G Q+   V   G D    I T+
Sbjct: 514 LHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTT 573

Query: 477 LVDFYCKCGFIKM 489
           ++ FY  CG + +
Sbjct: 574 IIHFYAACGMMDL 586



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 23/174 (13%)

Query: 36  ILNSTLPIANRL----LQMYMRCGNPTDALLLFDEMPRRNCFS---WNAMIEGFMKLGHK 88
           I N ++P+ + L    + MY +CG+   AL  F+++ R   FS   WNA+I G    GH 
Sbjct: 691 ICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQI-RDKTFSVSPWNAIICGLASHGHA 749

Query: 89  EKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNS 139
              L +F+ M     + N  ++  ++S    AG ++  R +F  M     +      +  
Sbjct: 750 SMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGC 809

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
           M+    R G   EA  + + +       ++ D  I  T++ AC     +  G++
Sbjct: 810 MVDLLGRAGLLEEAEEMIRSMP------MKADIVIWGTLLAACRTHGDVNIGER 857


>gi|218197545|gb|EEC79972.1| hypothetical protein OsI_21597 [Oryza sativa Indica Group]
          Length = 731

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 212/423 (50%), Gaps = 11/423 (2%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
           + D +   N   WNA+I G +       + + F+ MP +N  SW  +I G     E+  A
Sbjct: 126 VLDGVESPNVALWNALISGLVMNHRVGDARKAFDRMPVRNVVSWTAMIKGHFTVHEVDMA 185

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             LF  MP +N+++W  MI  +V +    EAV LF   NS ++   +    IL  ++ A 
Sbjct: 186 FQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELF---NSLMMNGEEVTNVILVKIVNAF 242

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A + ++  G+ IH   + +G  +D VL +SLV +Y K  D   A    + M+       +
Sbjct: 243 AGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWN 302

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           A++ GY    K+++AR++FD   +   + WNSMI+GYI++    +A  L+ KM     LE
Sbjct: 303 AMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKS-LE 361

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            A+ L   +S     G L+  + +  +  ++    DV+  + LL  Y K G   DA  LF
Sbjct: 362 AATAL---MSWFIDNGMLDKARDMFYNMPQI----DVMSCTTLLFGYVKGGHMDDALDLF 414

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             ++    +  N MI+     G+I +A  +F   P +  ++W+ ++ GL+ NG   EAL 
Sbjct: 415 HMMQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQ 474

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
            +  M   ++R  +  ++S+IS  +N S +  G+Q  A    IGLDS  +I  SL+  YC
Sbjct: 475 FYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYC 534

Query: 483 KCG 485
           KCG
Sbjct: 535 KCG 537



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 218/485 (44%), Gaps = 75/485 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L +++ +     SI  G+ +H   +K G     L +   L+ MY +  + T+A L FD+M
Sbjct: 235 LVKIVNAFAGMKSIRGGRCIHGLAVKSG-FAYDLVLEASLVLMYCKSLDITEARLEFDKM 293

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              +  SWNAM+ G++     +++ +LF+ M  ++  SWN +I+G+   G +  A  L++
Sbjct: 294 EGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYS 353

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  ++  A  +++  ++ NG   +A  +F   N   ++ + C   +             
Sbjct: 354 KMTEKSLEAATALMSWFIDNGMLDKARDMF--YNMPQIDVMSCTTLLFG----------- 400

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
                                        Y K G  + A  + +MM++      + +ISG
Sbjct: 401 -----------------------------YVKGGHMDDALDLFHMMQKRTVVTYNVMISG 431

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
             + GK+ +A ++F+ +    SV W+ +++G  +N    EAL  + KM  + +    S +
Sbjct: 432 LFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSESVV 491

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +S++S  S+   + HG+Q H    K+G           LD++                  
Sbjct: 492 SSLISCLSNYSMMVHGQQFHATTIKIG-----------LDSH------------------ 522

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
              ++ N++I++Y  CG +  A+ IF  M  +  ++WN++I G + N     A+++F +M
Sbjct: 523 --LLIQNSLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESM 580

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGF 486
            K  +  D  +   V+SAC ++S LE  +  F  +T   G+  + +    +VD +C+   
Sbjct: 581 TKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCM 640

Query: 487 IKMDE 491
           IK  E
Sbjct: 641 IKEAE 645



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 202/396 (51%), Gaps = 22/396 (5%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++   +AG L+ AR +F+ MPRR+ ++WN+++    R G    AV  F E+     +
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRR---Q 95

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVN---LYGKCGD 222
             + D    +T + ACA L ALE G  +    +++G++  +V L ++L++   +  + GD
Sbjct: 96  GFRPDHTSFSTALSACARLEALEMGSCLEQ--VLDGVESPNVALWNALISGLVMNHRVGD 153

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A +  + M   +    +A+I G+    +++ A ++F      +SV W  MI G++++
Sbjct: 154 ---ARKAFDRMPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTH 210

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
            + +EA+ LF+ +  NG       L  +++A + +  +  G+ +HG A K G   D+++ 
Sbjct: 211 EKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLE 270

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           ++L+  Y K    ++A   F +++       N M+  Y    +I++A+ +F +M N+  I
Sbjct: 271 ASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKI 330

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SWNSMI G   +G   +A +L+  M +  L     +  +++S   +   L+    +F  +
Sbjct: 331 SWNSMINGYINDGRIADATELYSKMTEKSLE----AATALMSWFIDNGMLDKARDMFYNM 386

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFI--KMDEYYLMQ 496
             I    D +  T+L+  Y K G +   +D +++MQ
Sbjct: 387 PQI----DVMSCTTLLFGYVKGGHMDDALDLFHMMQ 418


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 212/442 (47%), Gaps = 46/442 (10%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR----NCFSWNAMIEGFM 83
           H   L  GI      + N +++ Y     P +AL L   M RR    N F+   +++   
Sbjct: 64  HARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACT 123

Query: 84  KLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
               +E +L +  V  +       F  N L+  +A AG L  +R  F++M  RN ++WNS
Sbjct: 124 IAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNS 183

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           MI  Y + G  RE   LF E+     +    D F L +++ AC+    LE G+ +H  +L
Sbjct: 184 MIGGYAQAGDTREVCSLFGEMRR---QGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRML 240

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
           V+G   D +L S+LV++YGKCGD   A +   MM        ++++      G +N AR 
Sbjct: 241 VSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARC 300

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
            FD   + + V WN+MIS Y+   +  EAL L+++M+  G+  D  TL +VLSA   +G 
Sbjct: 301 WFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGD 360

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY--DTILLNTMI 377
           L  GK VH                                 L+    +Y  D  L+N+++
Sbjct: 361 LTVGKMVH---------------------------------LYIRDNIYNPDVSLVNSLL 387

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
            +Y+ CG+++ A  +F  M N++++SWN +I GL+ +G  ++ +  F +M       D  
Sbjct: 388 DMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGI 447

Query: 438 SLASVISACANISSLELGEQVF 459
           +  +++SAC++   LE G+  F
Sbjct: 448 TFVALLSACSHGGLLETGQHYF 469



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 179/378 (47%), Gaps = 36/378 (9%)

Query: 112 GFAKAGE--LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
             AKAG   L  AR LF+ +P  + + +N++I  Y  +   REA+RL + +   L   + 
Sbjct: 53  ALAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGM---LRRGIL 109

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            + F L  V+ AC    A E+   +H   L  GL                        QV
Sbjct: 110 PNEFTLPFVVKACTIAQAREHALAVHGVALRLGL----------------------VGQV 147

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                    F  +AL+  YA+ G + D+RR FD   D + V WNSMI GY    +  E  
Sbjct: 148 ---------FVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVC 198

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF +MRR G LED  TL S+L ACS  G LE G+ VH      G   D+I+ SAL+D Y
Sbjct: 199 SLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMY 258

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K G    A + F  + +   +   +M+   +  G +  A+  F  MP ++++SWN+MI 
Sbjct: 259 GKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMIS 318

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
              Q G   EALDL+  M    L  D+ +L +V+SA   I  L +G+ V   +     + 
Sbjct: 319 CYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNP 378

Query: 470 DQIISTSLVDFYCKCGFI 487
           D  +  SL+D Y KCG +
Sbjct: 379 DVSLVNSLLDMYAKCGQV 396



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 128/285 (44%), Gaps = 38/285 (13%)

Query: 212 SLVNLYGKCGDFNSANQ------VLNMMKEPDDFCLSALIS-GYANCGKMNDARRVFDRT 264
           SL  L  +C      NQ      V   +    D  L++  +   A  G +  ARR+FD  
Sbjct: 13  SLQKLLRQCRSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGI 72

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                VM+N++I  Y +++   EAL L   M R G+L +  TL  V+ AC+     EH  
Sbjct: 73  PGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHAL 132

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            VHG A ++G++  V V +ALL +Y+  G   D+ + F E+   + +  N+MI       
Sbjct: 133 AVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIG------ 186

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                    G +Q G   E   LF  M +     D+F+L S++ 
Sbjct: 187 -------------------------GYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLI 221

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           AC+   +LE+G  V  R+ + G   D I+ ++LVD Y KCG + M
Sbjct: 222 ACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWM 266


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 229/493 (46%), Gaps = 73/493 (14%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q   +FL+    ++ +   N  +  + R GN  +A  +F +M  R+  SW AMI  + + 
Sbjct: 35  QKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAEN 94

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG-ELKTARTLFNDMPRRNAIAWNSMIHCY 144
           G   K+ Q+F+ MP +   S+N +I+   K   +L  A  LF D+P +NA+++ +MI  +
Sbjct: 95  GKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGF 154

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           VR G   EA  L+ E                            +++   + S++L++G  
Sbjct: 155 VRAGRFDEAEFLYAE--------------------------TPVKFRDSVASNVLLSG-- 186

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                       Y + G +N A +V   M   +    S+++ GY   G++ DAR +FDR 
Sbjct: 187 ------------YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHG 323
           T+ + + W +MI GY       +   LF +MR+ G V  +++TLA +  AC        G
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREG 294

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
            Q+HG   ++ +  D+ + ++L+  YSK G   +A  +F  +K  D++  N++IT     
Sbjct: 295 SQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQR 354

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------------------- 412
            +I +A  +F  MP K ++SW  MI G S                               
Sbjct: 355 KQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFV 414

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
            NG   EAL  F  M + ++  + ++ +SV+SA A+++ L  G Q+  RV  + + +D  
Sbjct: 415 SNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS 474

Query: 473 ISTSLVDFYCKCG 485
           +  SLV  YCKCG
Sbjct: 475 VQNSLVSMYCKCG 487



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 209/446 (46%), Gaps = 66/446 (14%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           ++  ++R G   +A  L+ E P   R+  + N ++ G+++ G   +++++F  M  K   
Sbjct: 150 MITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVV 209

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S + ++ G+ K G +  AR+LF+ M  RN I W +MI  Y + GF  +   LF  +  + 
Sbjct: 210 SCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQE- 268

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++ ++  LA +  AC D      G QIH  +    L+FD  LG+SL+++Y K G   
Sbjct: 269 -GDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMG 327

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT------------------- 265
            A  V  +MK  D    ++LI+G     ++++A  +F++                     
Sbjct: 328 EAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGE 387

Query: 266 ------------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                       +  ++ W +MIS ++SN    EAL  FHKM +  V  ++ T +SVLSA
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +SL  L  G Q+HG   K+ +++D+ V ++L+  Y K G  +DA K+FS +   + +  
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI+                               G S NG   +AL LF  +      
Sbjct: 508 NTMIS-------------------------------GYSYNGFGKKALKLFSMLESSGKE 536

Query: 434 MDKFSLASVISACANISSLELGEQVF 459
            +  +  +++SAC ++  ++LG + F
Sbjct: 537 PNGVTFLALLSACVHVGYVDLGWKYF 562



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 167/359 (46%), Gaps = 36/359 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA + ++C        G Q+H   + +  L   L + N L+ MY + G   +A  +F  M
Sbjct: 278 LAVMFKACRDFVRYREGSQIH-GLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVM 336

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SWN++I G ++     ++ +LF  MP K+  SW  +I GF+  GE+     LF 
Sbjct: 337 KNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFG 396

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ I W +MI  +V NG+  EA+  F ++   L + +  +++  ++V+ A A LA 
Sbjct: 397 MMPEKDNITWTAMISAFVSNGYYEEALCWFHKM---LQKEVCPNSYTFSSVLSATASLAD 453

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G QIH  ++   +  D  + +SLV++Y KCG+ N A ++ + + EP+    + +ISG
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISG 513

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+                                N    +AL LF  +  +G   +  T 
Sbjct: 514 YS-------------------------------YNGFGKKALKLFSMLESSGKEPNGVTF 542

Query: 308 ASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
            ++LSAC  +G+++ G K          +       + ++D   + G+  DA  L S +
Sbjct: 543 LALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM 601



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 134/278 (48%), Gaps = 8/278 (2%)

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           S ++ + + G+   A  +   M         A+IS YA  GKM+ A +VFD      +  
Sbjct: 55  SQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTS 114

Query: 272 WNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +N+MI+  I N  D  +A  LF  +      ++A + A++++     G  +  + ++   
Sbjct: 115 YNAMITAMIKNKCDLGKAYELFCDIPE----KNAVSYATMITGFVRAGRFDEAEFLYAET 170

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
                  D + ++ LL  Y + G  ++A ++F  + V + +  ++M+  Y   GRI DA+
Sbjct: 171 PVK--FRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDAR 228

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANI 449
            +F  M  +++I+W +MI G  + G   +   LF  M +  D++++  +LA +  AC + 
Sbjct: 229 SLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDF 288

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                G Q+   V+ + L+ D  +  SL+  Y K G++
Sbjct: 289 VRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM 326


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 219/464 (47%), Gaps = 79/464 (17%)

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
           P DA  LFDEMP RN  SWN ++ G+MK G  +++ ++F++MP++N  SW  L+ G+   
Sbjct: 64  PRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHN 123

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFIL 175
           G++  A +LF  MP +N ++W  M+  ++++G   +A +L++ + + D + R        
Sbjct: 124 GKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIART------- 176

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMK 234
           + + G C +      G+   +  + + +   SV+  +++V  YG+    + A ++ ++M 
Sbjct: 177 SMIHGLCKE------GRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230

Query: 235 EPDDFCLSALISGYANCGKMNDA-------------------------------RRVFDR 263
           E  +   ++++ GY   G++ DA                               RRVFD 
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + +   W ++I  +  N  + EAL LF  M++ GV     TL S+LS C+SL  L HG
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           KQVH    +     DV VAS L+                               T+Y  C
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLM-------------------------------TMYIKC 379

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASV 442
           G +  +K IF   P+K +I WNS+I G + +G   EAL +FC M      + ++ +  + 
Sbjct: 380 GELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVAT 439

Query: 443 ISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           +SAC+    +E G +++  + ++ G+         +VD   + G
Sbjct: 440 LSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAG 483



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 181/422 (42%), Gaps = 105/422 (24%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N+ I+  ++ G++  AR LF+    ++  +WNSM+  Y  N   R+A +LF E+      
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMP----- 75

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
                                                D + +  + LV+ Y K G+ + A
Sbjct: 76  -------------------------------------DRNIISWNGLVSGYMKNGEIDEA 98

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +V ++M E +    +AL+ GY + GK++ A  +F +  + + V W  M+ G++      
Sbjct: 99  RKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFL------ 152

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD-------- 338
                     ++G ++DA  L  ++    ++        +HG  CK G +D+        
Sbjct: 153 ----------QDGRIDDACKLYEMIPDKDNIA---RTSMIHG-LCKEGRVDEAREIFDEM 198

Query: 339 ----VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
               VI  + ++  Y +     DA K+F  +     +   +M+  Y   GRIEDA+ +F 
Sbjct: 199 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFE 258

Query: 395 TMPNKSLISWNSMIVGLSQ-------------------------------NGSPIEALDL 423
            MP K +I+ N+MI GL Q                               NG  +EALDL
Sbjct: 259 VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDL 318

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M K  +R    +L S++S CA+++SL  G+QV A++     D D  +++ L+  Y K
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378

Query: 484 CG 485
           CG
Sbjct: 379 CG 380



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C +  S+H GKQ+H   ++    +  + +A+ L+ MY++CG    + L+FD  
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQ-FDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKAGELKTA 122
           P ++   WN++I G+   G  E++L++F  MP     + N+ ++   +S  + AG ++  
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
             ++  M     +      +  M+    R G   EA+ +   +       ++ DA +  +
Sbjct: 453 LKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT------VEPDAAVWGS 506

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           ++GAC   + L+   +  +  L+     +S     L N+Y   G +    ++  +MK
Sbjct: 507 LLGACRTHSQLDVA-EFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMK 562



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
           MP DA KLF E+   + I  N +++ Y   G I++A+ +F  MP ++++SW +++ G   
Sbjct: 63  MPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVH 122

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG    A  LF  M +     +K S   ++        ++   +++  +     D D I 
Sbjct: 123 NGKVDVAESLFWKMPE----KNKVSWTVMLIGFLQDGRIDDACKLYEMIP----DKDNIA 174

Query: 474 STSLVDFYCKCGFIKMDE 491
            TS++   CK G  ++DE
Sbjct: 175 RTSMIHGLCKEG--RVDE 190


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 136/528 (25%), Positives = 238/528 (45%), Gaps = 110/528 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           R L  C  H  +  G+ LH   L  G  +ST  IAN L+ +Y +C + + A L+FD +  
Sbjct: 15  RALVHCTRHKQLRKGRALHARILVTGSFSST-QIANSLINLYAKCSHFSKANLVFDSINN 73

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------------- 100
           ++  SWN +I  F +      SL + ++  Q                             
Sbjct: 74  KDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSR 133

Query: 101 ---------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                           + F+ + L++ + K G +  AR LF++MP RNA++W +MI  Y 
Sbjct: 134 AGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYA 193

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
               A EA  LFK +  +   + + + F+  +V+ A      +  G+Q+HS  + NGL  
Sbjct: 194 SQELADEAFELFKLMRHEEKGKNE-NEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGL-- 250

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
             V   S+ N                           AL++ Y  CG + DA + F+ + 
Sbjct: 251 --VCIVSVAN---------------------------ALVTMYVKCGSLEDALKTFELSG 281

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           + +S+ W++M++G+    +  +AL LF+ M ++G L    TL  V++ACS    +  G+Q
Sbjct: 282 NKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQ 341

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +HG++ K+G                             EL++Y   +L+ ++ +Y+ CG 
Sbjct: 342 MHGYSLKLGY----------------------------ELQLY---VLSALVDMYAKCGS 370

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           I DA+  F  +    ++ W S+I G  QNG    AL+L+  M    +  +  ++ASV+ A
Sbjct: 371 IVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKA 430

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           C+N+++L+ G+Q+ A +       +  I ++L   Y KCG   +D+ Y
Sbjct: 431 CSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCG--SLDDGY 476



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 156/342 (45%), Gaps = 74/342 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           ++ G+Q+H   +K G++   + +AN L+ MY++CG+  DAL  F+    +N  +W+AM+ 
Sbjct: 235 VNTGRQVHSLAMKNGLV-CIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVT 293

Query: 81  GFMKLGHKEKSLQLFNVMPQKND------------------------------------- 103
           GF + G  +K+L+LF  M Q  +                                     
Sbjct: 294 GFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYEL 353

Query: 104 --FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
             +  + L+  +AK G +  AR  F  + + + + W S+I  YV+NG    A+ L+ ++ 
Sbjct: 354 QLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQ 413

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
              +  +  +   +A+V+ AC++LAAL+ GKQ+H+ I+      +  +GS+L  +Y K  
Sbjct: 414 ---LGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAK-- 468

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                        CG ++D  R+F R      + WN+MISG   
Sbjct: 469 -----------------------------CGSLDDGYRIFWRMPARDVISWNAMISGLSQ 499

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
           N    E L LF KM   G   D  T  ++LSACS +G ++ G
Sbjct: 500 NGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRG 541



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 43/223 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C+   +I  G+Q+H + LK G     L + + L+ MY +CG+  DA   F+ +
Sbjct: 323 LVGVINACSDACAIVEGRQMHGYSLKLG-YELQLYVLSALVDMYAKCGSIVDARKGFECI 381

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ--------------------- 100
            + +   W ++I G+++ G  E +L L+       V+P                      
Sbjct: 382 QQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGK 441

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K +FS  + I       +AK G L     +F  MP R+ I+WN+MI    +NG
Sbjct: 442 QMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNG 501

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
              E + LF+++    +E  + D      ++ AC+ +  ++ G
Sbjct: 502 RGNEGLELFEKM---CLEGTKPDNVTFVNLLSACSHMGLVDRG 541


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/519 (26%), Positives = 225/519 (43%), Gaps = 109/519 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ+C     I VG++LH          +   +  R++ MY  CG+P+D+ ++FD++ R+
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKND----------------------- 103
           N F WNA++  + +    E ++ +F    +V   K D                       
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 104 -------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                        F  N LI+ + K G ++ A  +F  MP RN ++WNS+I  +  NGF 
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 151 REAVRLFKELNSDLV--ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +E+   F+E+   LV  E    D   L TV+  CA    +E G  +H   +  GL+ + +
Sbjct: 184 QESFNAFREM---LVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELM 240

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +SL+++Y KC  F S  Q+L                              FD+    +
Sbjct: 241 VNNSLIDMYSKC-RFLSEAQLL------------------------------FDKNDKKN 269

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQV 326
            V WNSMI GY    +      L  KM+     +  D  T+ +VL  C     L+  K++
Sbjct: 270 IVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKEL 329

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG++ + G+  + +VA                               N  I  Y+ CG +
Sbjct: 330 HGYSWRHGLQSNELVA-------------------------------NAFIAAYTRCGAL 358

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             ++ +F  M  K++ SWN+++ G +QN  P +ALDL+  M    L  D F++ S++ AC
Sbjct: 359 CSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 418

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + + SL  GE++       GL  D  I  SL+  Y  CG
Sbjct: 419 SRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCG 457



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 211/493 (42%), Gaps = 107/493 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C     I  G  +H   +K G LN  L + N L+ MY +C   ++A LLFD+ 
Sbjct: 207 LVTVLPVCAGEEDIEKGMAVHGLAVKLG-LNEELMVNNSLIDMYSKCRFLSEAQLLFDKN 265

Query: 68  PRRNCFSWNAMIEGFMK------------------LGHKEKSLQLFNVMP---------- 99
            ++N  SWN+MI G+ +                     K     + NV+P          
Sbjct: 266 DKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQS 325

Query: 100 -------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                        Q N+   N  I+ + + G L ++  +F+ M  +   +WN+++  Y +
Sbjct: 326 LKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQ 385

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           N   R+A+ L+ ++       L  D F + +++ AC+ + +L YG++IH   L NGL  D
Sbjct: 386 NSDPRKALDLYLQMTDS---GLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVD 442

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             +G SL++LY                      C          CGK   A+ +FD    
Sbjct: 443 PFIGISLLSLY---------------------IC----------CGKPFAAQVLFDGMEH 471

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            S V WN MI+GY  N    EA+ LF +M  +G+      +  V  ACS L  L  GK++
Sbjct: 472 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 531

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  A K  + +D+ V+S+++D Y+K G    + ++F  L+  D    N +I  Y   GR 
Sbjct: 532 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRG 591

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           +                               EAL+LF  M +L L+ D F+   ++ AC
Sbjct: 592 K-------------------------------EALELFEKMLRLGLKPDDFTFTGILMAC 620

Query: 447 ANISSLELGEQVF 459
           ++   +E G + F
Sbjct: 621 SHAGLVEDGLEYF 633



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/522 (23%), Positives = 225/522 (43%), Gaps = 105/522 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     + +G+ +H    K  +++    + N L+ MY +CG   +A+ +F+ MP R
Sbjct: 107 VIKACAGLLDLGLGQIIHGMATKMDLVSDVF-VGNALIAMYGKCGLVEEAVKVFEHMPER 165

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------------------NVMP---QKNDFSWNML 109
           N  SWN++I GF + G  ++S   F                   V+P    + D    M 
Sbjct: 166 NLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMA 225

Query: 110 ISGFA--------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
           + G A                    K   L  A+ LF+   ++N ++WNSMI  Y R   
Sbjct: 226 VHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREED 285

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
                 L +++ ++   +++ D F +  V+  C + + L+  K++H +   +GL      
Sbjct: 286 VCRTFYLLQKMQTEDA-KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGL------ 338

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                                    + ++   +A I+ Y  CG +  + RVFD     + 
Sbjct: 339 -------------------------QSNELVANAFIAAYTRCGALCSSERVFDLMDTKTV 373

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN+++ GY  N++  +AL L+ +M  +G+  D  T+ S+L ACS +  L +G+++HG 
Sbjct: 374 SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGF 433

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           A + G+  D  +  +LL  Y   G P  A  LF  ++    +  N MI  YS        
Sbjct: 434 ALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYS-------- 485

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                                  QNG P EA++LF  M    ++  + ++  V  AC+ +
Sbjct: 486 -----------------------QNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQL 522

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           S+L LG+++        L  D  +S+S++D Y K G I + +
Sbjct: 523 SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 564



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 127/257 (49%), Gaps = 39/257 (15%)

Query: 237 DDFCLSA-LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           +DF L+  +I+ Y+ CG  +D+R VFD+    +   WN+++S Y  N    +A+ +F ++
Sbjct: 32  NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91

Query: 296 RRNGVLE---DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
               V E   D  TL  V+ AC+ L  L  G+ +HG A K+ ++ DV V +AL       
Sbjct: 92  I--SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNAL------- 142

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                   I +Y  CG +E+A  +F  MP ++L+SWNS+I G S
Sbjct: 143 ------------------------IAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFS 178

Query: 413 QNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           +NG   E+ + F  M   +     D  +L +V+  CA    +E G  V      +GL+ +
Sbjct: 179 ENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEE 238

Query: 471 QIISTSLVDFYCKCGFI 487
            +++ SL+D Y KC F+
Sbjct: 239 LMVNNSLIDMYSKCRFL 255



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +L   +IT+YS CG   D++ +F  +  K+L  WN+++   ++N    +A+ +F  + 
Sbjct: 33  DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 92

Query: 429 KL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            + + + D F+L  VI ACA +  L LG+ +    T + L SD  +  +L+  Y KCG +
Sbjct: 93  SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 152

Query: 488 K 488
           +
Sbjct: 153 E 153


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 223/460 (48%), Gaps = 88/460 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRR-----NCFSWNAMIEGF-----MKLGHKEKSLQL 94
           N +L+ ++    P  AL  + EM  R     + F++ ++++G       K+G K    Q+
Sbjct: 47  NSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVG-KVLHGQV 105

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
              M   + +    L++ +A  G+LK+AR LF  M  RN + W SMI  Y++N    EA+
Sbjct: 106 VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEAL 165

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            L+K++  D       D   +AT++ ACA+L  L  G ++HSHI    +   +VLGS+LV
Sbjct: 166 LLYKKMEED---GFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALV 222

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           N+                               YA CG +  AR+VFD+ +D     W++
Sbjct: 223 NM-------------------------------YAKCGDLKTARQVFDQLSDKDVYAWSA 251

Query: 275 MISGYISNNEDTEALLLFHK------MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +I GY+ NN  TEAL LF +      MR N V     T+ +V+SAC+ LG LE G+ VH 
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEV-----TILAVISACAQLGDLETGRWVHD 306

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +                  T +++G              +   L N++I ++S CG I+ 
Sbjct: 307 YI-----------------TRTQKG--------------HSVSLNNSLIDMFSKCGDIDA 335

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK IF +M  K LISWNSM+ GL+ +G   EAL  F  M   DL+ D+ +   V++AC++
Sbjct: 336 AKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSH 395

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
              ++ G+++F  +  + G+         +VD  C+ G +
Sbjct: 396 AGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLL 435



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 158/355 (44%), Gaps = 73/355 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C       VGK LH   +K  +L+S L I   LL MY  CG+   A  LF+ M  R
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKY-MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHR 143

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------NDFSWNM--- 108
           N   W +MI G+MK     ++L L+  M +                     D    M   
Sbjct: 144 NKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLH 203

Query: 109 -----------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L++ +AK G+LKTAR +F+ +  ++  AW+++I  YV+N  + 
Sbjct: 204 SHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRST 263

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA++LF+E+       ++ +   +  VI ACA L  LE G+ +H +I          L +
Sbjct: 264 EALQLFREVAGG--SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN 321

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL++++ KCGD ++A                               +R+FD  +    + 
Sbjct: 322 SLIDMFSKCGDIDAA-------------------------------KRIFDSMSYKDLIS 350

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           WNSM++G   +    EAL  FH M+   +  D  T   VL+ACS  G ++ GK++
Sbjct: 351 WNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKL 405



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 32/233 (13%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACS 315
           A  VF  T     + WNSM+  ++++N    AL  + +M  R+  + D  T  S+L  C+
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L   + GK +HG   K  +  D+ + + LL+                            
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLN---------------------------- 122

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
              +Y++CG ++ A+ +F  M +++ + W SMI G  +N  P EAL L+  M +     D
Sbjct: 123 ---MYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + ++A+++SACA +  L +G ++ + +  + +    ++ ++LV+ Y KCG +K
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232


>gi|357478575|ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510628|gb|AES91770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 199/379 (52%), Gaps = 2/379 (0%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I   A++G +  AR LF++MP R+ +AWN+M+  Y R G  ++   LF  +    +   +
Sbjct: 12  IVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRR--ISDSK 69

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D F  +  I +CA  + + +G ++HS ++V+G      + ++L+++YGKC + N A +V
Sbjct: 70  PDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKV 129

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
            + M   ++    +L+  YAN  + + A  +F    +   + WN +I+ +    E    L
Sbjct: 130 FDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACL 189

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF +M  N    D  T ++++SAC+      HG  +H    K G    + V ++++  Y
Sbjct: 190 HLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFY 249

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +K     DA K+F+    ++ +  N +I  +   G  + A   F+  P K+++SW SMIV
Sbjct: 250 AKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIV 309

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G ++NG+   AL LF +M +   ++D     +V+ ACA+++ L  G+ V + +  +GLD 
Sbjct: 310 GYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLGLDK 369

Query: 470 DQIISTSLVDFYCKCGFIK 488
              +  SL++ Y KCG I+
Sbjct: 370 YLFVGNSLINMYAKCGDIE 388



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 201/477 (42%), Gaps = 67/477 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC     I  G +LH   +  G   S+LP+AN L+ MY +C NP DA  +FDE     
Sbjct: 79  INSCAGASDIRFGTKLHSLVVVSG-YQSSLPVANALIDMYGKCFNPNDARKVFDE----- 132

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
                                     M   N+ +W  L+  +A       A  +F  MP 
Sbjct: 133 --------------------------MNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPE 166

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +  IAWN +I  + R G     + LFKE+  +L    Q D +  + ++ AC +     +G
Sbjct: 167 KVEIAWNIIIAAHARCGEVEACLHLFKEMCENL---YQPDQWTFSALMSACTESMESLHG 223

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H  ++ +G      + +S+V+ Y K      A +V N     +    +A+I  +   
Sbjct: 224 CMMHCFVIKSGWSTAMEVNNSIVSFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKV 283

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G    A   F +  + + V W SMI GY  N     AL LF  M+RN    D     +VL
Sbjct: 284 GDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAGAVL 343

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            AC+SL  L HGK VH     +G           LD Y   G                  
Sbjct: 344 HACASLAILVHGKMVHSCIIHLG-----------LDKYLFVG------------------ 374

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
             N++I +Y+ CG IE +K   R + +K L+SWNSM+     NG   EA+ +F  M    
Sbjct: 375 --NSLINMYAKCGDIEGSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFREMVASG 432

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFI 487
           +R D+ +   ++  C+++  ++ G   F  +++  GL         +VD   + G++
Sbjct: 433 VRPDEVTFTGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVDMLGRGGYV 489



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 155/356 (43%), Gaps = 69/356 (19%)

Query: 8   LARLLQSCN-THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            + L+ +C  +  S+H G  +H   +K G  ++ + + N ++  Y +     DA+ +F+ 
Sbjct: 207 FSALMSACTESMESLH-GCMMHCFVIKSG-WSTAMEVNNSIVSFYAKLECHGDAVKVFNS 264

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
               N  SWNA+I+  MK+G  +K+L  F   P+KN  SW  +I G+ + G    A +LF
Sbjct: 265 GGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGNGDLALSLF 324

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
            DM                RN F                   Q D  +   V+ ACA LA
Sbjct: 325 LDMK---------------RNSF-------------------QLDDLVAGAVLHACASLA 350

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            L +GK +HS I+  GLD    +G+SL+N+Y KCGD   +   L  + + D      L+S
Sbjct: 351 ILVHGKMVHSCIIHLGLDKYLFVGNSLINMYAKCGDIEGSKLALRGINDKD------LVS 404

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
                                    WNSM+  +  N    EA+ +F +M  +GV  D  T
Sbjct: 405 -------------------------WNSMLFAFGLNGRGNEAICMFREMVASGVRPDEVT 439

Query: 307 LASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
              +L  CS LG ++ G       + + G++  +   + ++D   + G  ++A  L
Sbjct: 440 FTGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVDMLGRGGYVAEAQSL 495


>gi|302787184|ref|XP_002975362.1| hypothetical protein SELMODRAFT_103065 [Selaginella moellendorffii]
 gi|300156936|gb|EFJ23563.1| hypothetical protein SELMODRAFT_103065 [Selaginella moellendorffii]
          Length = 661

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/494 (26%), Positives = 232/494 (46%), Gaps = 74/494 (14%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+  R+ Q C     +   +++H   L+ G L     ++N L++MY RCG    +   FD
Sbjct: 53  DHANRIRQ-CGRAGDLAEAERVHAAVLRSG-LGGDRFLSNLLVEMYGRCGGVEGSRTAFD 110

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
            +   N +S                           + F    +++ + K G +  A  +
Sbjct: 111 AIESPNVYS---------------------------DIFLGTAIVNMYGKCGSIHDAEEI 143

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  M  R+ +AWN+M+  Y  NG+  EA +LF+E+     E ++ D  +  +++ AC+ L
Sbjct: 144 FFRMEHRDVVAWNAMLSAYAHNGYELEAAKLFQEMEH---EGVKADRVVFVSLLEACSKL 200

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             LE GK +H  +   G + + VLG +LVNLYGKC                         
Sbjct: 201 GDLEQGKVVHGRVTELGFEAEDVLGHALVNLYGKC------------------------- 235

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
                 G + +AR +F +    + V WN +I+ Y+ N    +AL LF +M  +G   D  
Sbjct: 236 ------GALEEARSLFGKIVSKNVVSWNVLITAYLQNGLVEDALKLFTEMALDGTRPDDV 289

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  ++++ C+ +  LE  + +H    +  +  D ++ +A+++ Y K G   DA   F  +
Sbjct: 290 TFNNLVNLCTGVVSLEQARILHRRLIESEIHVDAVMRNAVMNLYVKAGSLEDARAEFYRM 349

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
           +V D ++ NT+IT Y  CG I+ ++ +F  M  K++ISW S IV  + NG   +A+ L  
Sbjct: 350 EVRD-VIGNTLITSYGQCGNIDASRAVFTGMECKNVISWTSSIVAHATNGQASQAMGLLH 408

Query: 426 NMNKLDLRMDKFSLASVISACANIS--------SLELGEQVFARVTIIGLDSDQIISTSL 477
            M+   +  +K +L  +I AC +++        S+ + E V +  +    +S  ++ T+L
Sbjct: 409 QMHLEGVHPNKVTLLGLIDACVSLAAAVDKNERSIVIPEYVLSVAS--RFESTIVLETAL 466

Query: 478 VDFYCKCGFIKMDE 491
           ++ + KCG ++  E
Sbjct: 467 LNMHAKCGNVEEAE 480



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 223/496 (44%), Gaps = 72/496 (14%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S + +   ++ MY +CG+  DA  +F  M  R+  +WNAM+  +   G++ ++ +LF  M
Sbjct: 119 SDIFLGTAIVNMYGKCGSIHDAEEIFFRMEHRDVVAWNAMLSAYAHNGYELEAAKLFQEM 178

Query: 99  PQK---------------------------------------NDFSWNMLISGFAKAGEL 119
             +                                        D   + L++ + K G L
Sbjct: 179 EHEGVKADRVVFVSLLEACSKLGDLEQGKVVHGRVTELGFEAEDVLGHALVNLYGKCGAL 238

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           + AR+LF  +  +N ++WN +I  Y++NG   +A++LF E+  D     + D      ++
Sbjct: 239 EEARSLFGKIVSKNVVSWNVLITAYLQNGLVEDALKLFTEMALD---GTRPDDVTFNNLV 295

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
             C  + +LE  + +H  ++ + +  D+V+ ++++NLY K G    A      M E  D 
Sbjct: 296 NLCTGVVSLEQARILHRRLIESEIHVDAVMRNAVMNLYVKAGSLEDARAEFYRM-EVRDV 354

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
             + LI+ Y  CG ++ +R VF      + + W S I  + +N + ++A+ L H+M   G
Sbjct: 355 IGNTLITSYGQCGNIDASRAVFTGMECKNVISWTSSIVAHATNGQASQAMGLLHQMHLEG 414

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           V  +  TL  ++ AC SL            A  V   +  IV    + + + R       
Sbjct: 415 VHPNKVTLLGLIDACVSL------------AAAVDKNERSIVIPEYVLSVASR------- 455

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHI-FRTMPN--KSLISWNSMIVGLSQNGS 416
             F    V +T LLN    +++ CG +E+A+ I F  M +  +  I+WN+M+   + NG 
Sbjct: 456 --FESTIVLETALLN----MHAKCGNVEEAERIFFEKMADGERDSIAWNAMVSAYATNGH 509

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIIST 475
            +EA++LF  M    +     +L S++S C++   +  G + FA  V   G+        
Sbjct: 510 GLEAIELFYGMVLQGVLPTSVTLTSILSGCSHAGLVGQGIRYFACMVEDHGVTPTADHMN 569

Query: 476 SLVDFYCKCGFIKMDE 491
            LVD   + G+++  E
Sbjct: 570 CLVDLLGRAGWLREAE 585



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 37/327 (11%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A  I  C     L   +++H+ +L +GL  D  L + LV +YG+CG    +    + ++ 
Sbjct: 55  ANRIRQCGRAGDLAEAERVHAAVLRSGLGGDRFLSNLLVEMYGRCGGVEGSRTAFDAIES 114

Query: 236 P----DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
           P    D F  +A+++ Y  CG ++DA  +F R      V WN+M+S Y  N  + EA  L
Sbjct: 115 PNVYSDIFLGTAIVNMYGKCGSIHDAEEIFFRMEHRDVVAWNAMLSAYAHNGYELEAAKL 174

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M   GV  D     S+L ACS LG LE GK VHG   ++G   + ++  AL++ Y K
Sbjct: 175 FQEMEHEGVKADRVVFVSLLEACSKLGDLEQGKVVHGRVTELGFEAEDVLGHALVNLYGK 234

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G   +A  LF ++   + +  N +IT Y   G +EDA  +F  M               
Sbjct: 235 CGALEEARSLFGKIVSKNVVSWNVLITAYLQNGLVEDALKLFTEM--------------- 279

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
                   ALD          R D  +  ++++ C  + SLE    +  R+    +  D 
Sbjct: 280 --------ALD--------GTRPDDVTFNNLVNLCTGVVSLEQARILHRRLIESEIHVDA 323

Query: 472 IISTSLVDFYCKCGFIK--MDEYYLMQ 496
           ++  ++++ Y K G ++    E+Y M+
Sbjct: 324 VMRNAVMNLYVKAGSLEDARAEFYRME 350



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 187/466 (40%), Gaps = 112/466 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C+    +  GK +H    + G     + + + L+ +Y +CG   +A  LF ++  +
Sbjct: 193 LLEACSKLGDLEQGKVVHGRVTELGFEAEDV-LGHALVNLYGKCGALEEARSLFGKIVSK 251

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLI---SG----------- 112
           N  SWN +I  +++ G  E +L+LF  M     + +D ++N L+   +G           
Sbjct: 252 NVVSWNVLITAYLQNGLVEDALKLFTEMALDGTRPDDVTFNNLVNLCTGVVSLEQARILH 311

Query: 113 ---------------------FAKAGELKTAR---------------------------- 123
                                + KAG L+ AR                            
Sbjct: 312 RRLIESEIHVDAVMRNAVMNLYVKAGSLEDARAEFYRMEVRDVIGNTLITSYGQCGNIDA 371

Query: 124 --TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
              +F  M  +N I+W S I  +  NG A +A+ L  +++   +E +  +   L  +I A
Sbjct: 372 SRAVFTGMECKNVISWTSSIVAHATNGQASQAMGLLHQMH---LEGVHPNKVTLLGLIDA 428

Query: 182 CADLAAL----EYGKQIHSHILVNGLDFDS--VLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C  LAA     E    I  ++L     F+S  VL ++L+N++ KCG+   A ++      
Sbjct: 429 CVSLAAAVDKNERSIVIPEYVLSVASRFESTIVLETALLNMHAKCGNVEEAERIF----- 483

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                            KM D  R         S+ WN+M+S Y +N    EA+ LF+ M
Sbjct: 484 ---------------FEKMADGER--------DSIAWNAMVSAYATNGHGLEAIELFYGM 520

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV---GVIDDVIVASALLDTYSKR 352
              GVL  + TL S+LS CS  G +  G+ +   AC V   GV       + L+D   + 
Sbjct: 521 VLQGVLPTSVTLTSILSGCSHAGLV--GQGIRYFACMVEDHGVTPTADHMNCLVDLLGRA 578

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           G   +A  L  ++   D +    ++      G +E   +  R   N
Sbjct: 579 GWLREAEDLIRKMPAGDPLTWKVLLGACRLHGDLERGTNAARKASN 624


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 231/518 (44%), Gaps = 105/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C     IH+GK +H   +K G++   L + N ++ +Y +CG   +A+ LFD+MP +
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLI-MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQ 274

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND--------------------------- 103
           N  SWN++I GF + G   ++ + F  + +  D                           
Sbjct: 275 NLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMV 334

Query: 104 --------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N LI  ++K G L  A  LF  +  ++ ++WNSMI  Y R GF
Sbjct: 335 IHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGF 394

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E   L +++  +  E ++ +   +  ++ AC + + L   + +H + L +   +    
Sbjct: 395 VFETFDLLRKMWME-EELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQY---- 449

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
              L+N                          +A I+ YA CG +  A  VF      S 
Sbjct: 450 -KELIN--------------------------NAFIAAYAKCGSLVFAEHVFFGMNTKSV 482

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN++I G+  N +  +AL  + +M R G+L D  ++ S+L AC  LG L++GK++HG 
Sbjct: 483 SSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGF 542

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  +  VA +LL                               ++Y  C +    
Sbjct: 543 VLRNGLEMNSFVAVSLL-------------------------------SLYFHCSKPFYG 571

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +  F TM +K+ + WN+M+ G SQN  P EAL LF  M    L  D+ ++AS++ AC+ +
Sbjct: 572 RTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQL 631

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           S+L LG++V        L  D  ++ SL+D Y K GF+
Sbjct: 632 SALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFL 669



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/523 (25%), Positives = 232/523 (44%), Gaps = 105/523 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R + +  LLQ C  + ++ +G++L          +    +  RL+ MY  CG P ++ L+
Sbjct: 106 RKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLV 165

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKS----LQLFNVMP-QKNDFSW------------ 106
           FD +  +N F WNA++ G+++    +++    L+L +V   Q ++F++            
Sbjct: 166 FDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCD 225

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N +I+ + K G L  A  LF+ MP +N I+WNS+I  
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRG 285

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           +  NGF  EA R F+ L  +  + L  D   + T++  C+    ++ G  IH   +  GL
Sbjct: 286 FSENGFWLEAYRAFRSL-LESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             + ++ ++L+++Y KCG                  CLS             +A  +F +
Sbjct: 345 VHELMVCNALIDMYSKCG------------------CLS-------------EAAILFRK 373

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS--TLASVLSACSSLGFLE 321
             + S V WNSMI  Y       E   L  KM     L + +  T+ ++L AC     L 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
             + +HG+              +L  ++                  Y  ++ N  I  Y+
Sbjct: 434 SLRALHGY--------------SLRHSFQ-----------------YKELINNAFIAAYA 462

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG +  A+H+F  M  KS+ SWN++I G +QNG PI+ALD +  M +L +  D FS+ S
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ++ AC  +  L+ G+++   V   GL+ +  ++ SL+  Y  C
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHC 565



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/522 (26%), Positives = 237/522 (45%), Gaps = 112/522 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL  C+   ++ VG  +H   +K G+++  L + N L+ MY +CG  ++A +LF ++
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE-LMVCNALIDMYSKCGCLSEAAILFRKI 374

Query: 68  PRRNCFSWNAMI-----EGFM--------KLGHKEKSLQ-----LFNVMPQ--------- 100
             ++  SWN+MI     EGF+        K+  +E+ ++     + N++P          
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 101 ---------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                    ++ F +     N  I+ +AK G L  A  +F  M  ++  +WN++I  + +
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 147 NGFAREAVRLFKELNSDLVERLQC--DAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           NG   +A+  + E+      RL    D F + +++ AC  L  L+YGK+IH  +L NGL+
Sbjct: 495 NGDPIKALDFYFEMT-----RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLE 549

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +S +  SL++LY                                +C K    R  F+  
Sbjct: 550 MNSFVAVSLLSLY-------------------------------FHCSKPFYGRTYFETM 578

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            D +SV WN+M+SGY  N    EAL LF +M  +G+  D   +AS+L ACS L  L  GK
Sbjct: 579 GDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGK 638

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +VH  A K  +++D  VA +L+D Y+K G    + ++F+ L   +    N MIT      
Sbjct: 639 EVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMIT------ 692

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                    G   +G   +A++LF +M + D + D+F+   V+ 
Sbjct: 693 -------------------------GFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQ 727

Query: 445 ACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           AC +   +  G    A++ T+  L+ +      ++D   + G
Sbjct: 728 ACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAG 769



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +L   +IT+YS CG   +++ +F  + NK+L  WN+++ G  +N    EA+  F  + 
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 429 KL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            + + + D F+   +I AC     + LG+ V      +GL  D  +  +++  Y KCGF+
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C+   ++ +GK++H   LK  ++     +A  L+ MY + G    +  +F+ +
Sbjct: 621 IASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMYAKSGFLGHSQRIFNRL 679

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAG------ 117
             +   SWN MI GF   G   K+++LF  M     Q + F++  ++     AG      
Sbjct: 680 NGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGL 739

Query: 118 -ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             L   +TL+   P     A   +I    R G   EA+    E+        + DA I +
Sbjct: 740 NYLAQMQTLYKLEPELEHYA--CVIDMLGRAGRLNEALNFINEMPE------EPDAKIWS 791

Query: 177 TVIGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +++ +      LE G++    +L +     DS +   L NLY   G ++    V   MK+
Sbjct: 792 SLLSSSITYVDLEMGEKFAEKLLALEANKADSYI--LLSNLYATAGKWDVVRMVRQKMKD 849


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 226/467 (48%), Gaps = 71/467 (15%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           L   N+ +   +R G   +A  LFD MP+RN  +WN+MI G+++     K+ +LF+ MP 
Sbjct: 67  LYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPD 126

Query: 101 KNDFSWNMLISGFA--KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           ++  SWN++ISG+   +   ++  R LF++MP R+ ++WN+MI  Y R+G   EA++LF 
Sbjct: 127 RDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFD 186

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
            +    V  +  +A +   +     +  A+E+  ++           DS   S+LV    
Sbjct: 187 SMQERNV--VSWNAMVTGFLQNGDVE-RAIEFFMRMPER--------DSASLSALVAGLI 235

Query: 219 KCGDFNSANQVLNMMKEPDD------FCLSALISGYANCGKMNDARRVFDRTT------- 265
           + G+ + A ++L   +  DD         + L++GY   G+++ AR++FD+         
Sbjct: 236 QNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQK 295

Query: 266 -----DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
                + + V WNSMI  Y+   +   A +LF +M+                        
Sbjct: 296 DGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKER---------------------- 333

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
                            D I  + ++  Y +     +A  LF E+   DT+  N+MI+ +
Sbjct: 334 -----------------DTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGF 376

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +  G +E A+ +F T+P K+L+SWNSMI G   NG    A +L+  M     + D+ +L+
Sbjct: 377 AQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLS 436

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           SV+S C+  ++L LG Q+  ++T   +  D  I+ SL+  Y +CG I
Sbjct: 437 SVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAI 482



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 225/520 (43%), Gaps = 117/520 (22%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK--EKSLQLFNVMPQKN 102
           N ++  Y+R      A  LFDEMP R+  SWN MI G++    +  E+   LF+ MP+++
Sbjct: 102 NSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERD 161

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             SWN +ISG+ ++G +  A  LF+ M  RN ++WN+M+  +++NG    A+  F     
Sbjct: 162 CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMR--- 218

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQI---------------HSH-ILVNGLD-- 204
            + ER   D+  L+ ++        L+  K+I               H++ IL+ G    
Sbjct: 219 -MPER---DSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQN 274

Query: 205 ---------FDS------------------VLGSSLVNLYGKCGDFNSANQVLNMMKE-- 235
                    FD                   V  +S++  Y K  D  SA  + + MKE  
Sbjct: 275 GRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERD 334

Query: 236 -----------------------------PDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                        PD    +++ISG+A  G +  AR +F     
Sbjct: 335 TISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQ 394

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V WNSMI+GY +N +   A  L+ +M   G   D  TL+SVLS CS    L  G Q+
Sbjct: 395 KNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQI 454

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    K  VI D+ + ++L+  YS+ G   +A  +F E+K+                   
Sbjct: 455 HQQITKT-VIPDIPINNSLITMYSRCGAIVEARTIFDEVKL------------------- 494

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                       K +ISWN+MI G + +G   +AL+LF  M +L +R    +  SV++AC
Sbjct: 495 -----------QKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNAC 543

Query: 447 ANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG 485
           A+   ++ G   F  +    G++       SLVD   + G
Sbjct: 544 AHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHG 583



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 161/323 (49%), Gaps = 37/323 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y++  +   A +LFD+M  R+  SWN MI G++++   E++  LF  MP  +  
Sbjct: 308 NSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTL 367

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN +ISGFA+ G L+ AR LF  +P++N ++WNSMI  Y  NG  + A  L++++   L
Sbjct: 368 TWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQM---L 424

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           ++  + D   L++V+  C+  AAL  G QIH  I    +  D  + +SL+ +Y +CG   
Sbjct: 425 LQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP-DIPINNSLITMYSRCGAIV 483

Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            A  + + +K + +    +A+I GYA  G   D                           
Sbjct: 484 EARTIFDEVKLQKEVISWNAMIGGYAFHGFAAD--------------------------- 516

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVA 342
               AL LF  M+R  V     T  SVL+AC+  GF++ G+      AC+ G+   +   
Sbjct: 517 ----ALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHF 572

Query: 343 SALLDTYSKRGMPSDACKLFSEL 365
           ++L+D   + G   +A  L + +
Sbjct: 573 ASLVDIVGRHGQLEEAMDLINSM 595



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 23/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C+   ++H+G Q+H    K  I +  +PI N L+ MY RCG   +A  +FDE+
Sbjct: 435 LSSVLSVCSGFAALHLGMQIHQQITKTVIPD--IPINNSLITMYSRCGAIVEARTIFDEV 492

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTA 122
             ++   SWNAMI G+   G    +L+LF +M     +    ++  +++  A AG +K  
Sbjct: 493 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEG 552

Query: 123 RTLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           R  F  M       PR    A  S++    R+G   EA+ L   +        + D  + 
Sbjct: 553 RMHFKSMACEFGIEPRIEHFA--SLVDIVGRHGQLEEAMDLINSMP------FEPDKAVW 604

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             ++GAC     +E  + + +  L+      S     L N+Y   G +++A ++  MM+
Sbjct: 605 GALLGACRVHNNVELAR-VAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMME 662



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D    N  I+     GRI +A+ +F  MP +++++WNSMI G  +     +A  LF  M 
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             D+      ++  +S       +E G  +F  +     + D +   +++  Y + G  +
Sbjct: 126 DRDVVSWNLMISGYVSCQGRW--VEEGRHLFDEMP----ERDCVSWNTMISGYTRSG--R 177

Query: 489 MDE 491
           MDE
Sbjct: 178 MDE 180


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 231/516 (44%), Gaps = 109/516 (21%)

Query: 11  LLQSCNTHHSIHVGKQLH--LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           ++++C   +S+ +G+ +H  + F+        + + + L++ Y   G   DA  LFD MP
Sbjct: 153 VIKACGGLNSVALGRVVHDKIQFMG---FELDVFVGSSLIKFYSENGCIHDARYLFDRMP 209

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS----------------- 105
            ++   WN M+ G++K G  + +  +F  M      P    F+                 
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ 269

Query: 106 ----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N L++ +AK G L  AR LF+ MP+ + + WN MI  YV+NGF
Sbjct: 270 LHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGF 329

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA  LF E+ S    R++ D+   ++ +   ++ A L  GK+IH +I+ NG+  D  L
Sbjct: 330 MDEASCLFHEMIS---ARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFL 386

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            S+L+++Y KC D   A ++ +     D    +A+ISGY   G  N+A  +F        
Sbjct: 387 KSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFR------- 439

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             W                 LL  +MR N V     TLASVL AC+ L  L  GK++HGH
Sbjct: 440 --W-----------------LLQERMRANSV-----TLASVLPACAGLAALTLGKELHGH 475

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K G      V SA++D Y+K G    A + F  +   D +  N+MIT  S  G+ E  
Sbjct: 476 ILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPE-- 533

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                                        EA+DLF  M     + D  S+++ +SACAN+
Sbjct: 534 -----------------------------EAIDLFRQMGMAGTKYDCVSISAALSACANL 564

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +L  G+++ A +      SD    ++L+D Y KCG
Sbjct: 565 PALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCG 600



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 226/477 (47%), Gaps = 81/477 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L  C +   I+ G QLH   +  G L    P+AN LL MY +CG+  DA  LFD M
Sbjct: 251 FACVLSVCASEIMINFGSQLHGLVVSSG-LEMDSPVANTLLAMYAKCGHLFDARRLFDMM 309

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS---------------- 105
           P+ +  +WN MI G+++ G  +++  LF+ M      P    FS                
Sbjct: 310 PKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGK 369

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + LI  + K  +++ AR +F+     + +   +MI  YV NG
Sbjct: 370 EIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNG 429

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A+ +F+ L   L ER++ ++  LA+V+ ACA LAAL  GK++H HIL NG      
Sbjct: 430 MNNNALEIFRWL---LQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCY 486

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+++++Y K                               CG+++ A + F   +D  
Sbjct: 487 VGSAIMDMYAK-------------------------------CGRLDLAHQTFIGISDKD 515

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WNSMI+    N +  EA+ LF +M   G   D  ++++ LSAC++L  L +GK++H 
Sbjct: 516 AVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHA 575

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              +     D+   SAL+D YSK G    AC++F  ++  + +  N++I  Y + GR++D
Sbjct: 576 FMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKD 635

Query: 389 AKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLF-CNMNKLDL--RMDKFS 438
           + ++F  M    +    +++ ++I      G   E +  F C   +L +  RM+ ++
Sbjct: 636 SLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYA 692



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 221/523 (42%), Gaps = 105/523 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D+    L  +LQ+C     +  G+Q H   L  GI  + + +  +LL MY+ CG   DA 
Sbjct: 43  DSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGI-LGTKLLGMYVLCGAFLDAK 101

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW--------- 106
            +F ++       WN MI GF  +G  + +L  +        +P K  F +         
Sbjct: 102 NIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLN 161

Query: 107 ------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                   + LI  +++ G +  AR LF+ MP ++ + WN M++
Sbjct: 162 SVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLN 221

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            YV+NG    A  +F E+          ++   A V+  CA    + +G Q+H  ++ +G
Sbjct: 222 GYVKNGDWDNATGVFMEMRR---TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSG 278

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L+ DS + ++L+ +Y KCG    A ++ +MM + D    + +ISGY   G M+       
Sbjct: 279 LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMD------- 331

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                                   EA  LFH+M    +  D+ T +S L   S    L  
Sbjct: 332 ------------------------EASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQ 367

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++H +  + GV  DV + SAL+D Y K                               
Sbjct: 368 GKEIHCYIIRNGVSLDVFLKSALIDIYFK------------------------------- 396

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           C  +E A+ IF       ++   +MI G   NG    AL++F  + +  +R +  +LASV
Sbjct: 397 CRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASV 456

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + ACA +++L LG+++   +   G      + ++++D Y KCG
Sbjct: 457 LPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCG 499



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 133/313 (42%), Gaps = 62/313 (19%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           L +++  C D + L  G+Q H+ +LVNG+ ++ +LG+ L+ +Y  CG F           
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFL---------- 98

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                                DA+ +F +     S  WN MI G+    +   ALL + K
Sbjct: 99  ---------------------DAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFK 137

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M   G L D  T   V+ AC  L  +  G+ VH     +G   DV V S+L+  YS+ G 
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                          I DA+++F  MP+K  + WN M+ G  +N
Sbjct: 198 -------------------------------IHDARYLFDRMPSKDGVLWNVMLNGYVKN 226

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G    A  +F  M + +   +  + A V+S CA+   +  G Q+   V   GL+ D  ++
Sbjct: 227 GDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVA 286

Query: 475 TSLVDFYCKCGFI 487
            +L+  Y KCG +
Sbjct: 287 NTLLAMYAKCGHL 299



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 186/420 (44%), Gaps = 80/420 (19%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  GK++H + ++ G+      + + L+ +Y +C +   A  +FD+    +     AMI
Sbjct: 364 TLRQGKEIHCYIIRNGVSLDVF-LKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMI 422

Query: 80  EGFMKLGHKEKSLQLFNVMPQK-------------------------NDFSWNMLISG-- 112
            G++  G    +L++F  + Q+                          +   ++L +G  
Sbjct: 423 SGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG 482

Query: 113 ------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                       +AK G L  A   F  +  ++A+ WNSMI    +NG   EA+ LF+++
Sbjct: 483 GSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM 542

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
               +   + D   ++  + ACA+L AL YGK+IH+ ++                     
Sbjct: 543 G---MAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR-------------------- 579

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G F S           D F  SALI  Y+ CG ++ A RVFD   + + V WNS+I+ Y 
Sbjct: 580 GAFRS-----------DLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYG 628

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC---KVGVID 337
           ++    ++L LFH M  +G+  D  T  +++SAC   G ++ G  +H   C   ++G++ 
Sbjct: 629 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMA 686

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTM 396
            +   + ++D + + G  ++A  + + +    D  +  T++      G +E A+   R +
Sbjct: 687 RMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNL 746



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 49/273 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C    ++ +GK+LH H LK G   S   + + ++ MY +CG    A   F  +
Sbjct: 453 LASVLPACAGLAALTLGKELHGHILKNGHGGSCY-VGSAIMDMYAKCGRLDLAHQTFIGI 511

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
             ++   WN+MI    + G  E+++ LF  M                             
Sbjct: 512 SDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGK 571

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      + + F+ + LI  ++K G L  A  +F+ M  +N ++WNS+I  Y  +G
Sbjct: 572 EIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHG 631

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN---GLDF 205
             ++++ LF  +   L + +Q D      +I AC     ++ G  IH    +    G+  
Sbjct: 632 RLKDSLNLFHGM---LGDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMA 686

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPD 237
                + +V+L+G+ G  N A  ++N M   PD
Sbjct: 687 RMEHYACMVDLFGRAGRLNEAFGMINSMPFSPD 719



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
           A  L S+L  C+    L  G+Q H      G+                            
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQMLVNGI---------------------------- 77

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
               Y+ IL   ++ +Y  CG   DAK+IF  +       WN MI G +  G    AL  
Sbjct: 78  ---GYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLF 134

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           +  M       DK++   VI AC  ++S+ LG  V  ++  +G + D  + +SL+ FY +
Sbjct: 135 YFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSE 194

Query: 484 CGFIKMDEYYL 494
            G I  D  YL
Sbjct: 195 NGCIH-DARYL 204


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 134/484 (27%), Positives = 216/484 (44%), Gaps = 105/484 (21%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++    K G  + + +LF+VMP +++ SWN +I  +A +G L  AR LF + P R+ I
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W+S+I  Y R G   EA+ LF E+     E  + + F   +V+  C+    LE GKQIH
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQ---YEGERPNQFTWGSVLRVCSMYVLLEKGKQIH 161

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +H +     FDS                             + F ++ L+  YA C  + 
Sbjct: 162 AHAIKT--QFDS-----------------------------NAFVVTGLVDMYAKCKCIL 190

Query: 256 DARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           +A  +F+   D  + V+W +M++GY  N +  +A+  F  MR  G+  +  T  S+L+AC
Sbjct: 191 EAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTAC 250

Query: 315 SSLGFLEHGKQVHGHACKVGV-------------------------------IDDVIVAS 343
            S+     G QVHG   + G                                +DD +  +
Sbjct: 251 GSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWN 310

Query: 344 ALLDTYSKRGMPSDACKLFS-----ELKV----YDTILL--------------------- 373
           +++    ++G+  +A  LF       +K+    Y ++L                      
Sbjct: 311 SMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKT 370

Query: 374 ---------NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                    N ++ +Y+  G  + A  +F  M +K +ISW S++ G   NGS  EAL LF
Sbjct: 371 GFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLF 430

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           C M  + +  D+  +A+V+SACA ++ LE G+QV A     GL S   +  SLV  Y KC
Sbjct: 431 CEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKC 490

Query: 485 GFIK 488
           G I+
Sbjct: 491 GCIE 494



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 227/499 (45%), Gaps = 90/499 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-R 69
           +L+ C+ +  +  GKQ+H H +K    +S   +   L+ MY +C    +A  LF+  P +
Sbjct: 144 VLRVCSMYVLLEKGKQIHAHAIKTQ-FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDK 202

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---------------------------- 101
           RN   W AM+ G+ + G   K+++ F  M  +                            
Sbjct: 203 RNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQV 262

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      N F  + L+  ++K G+L  AR +   M   + ++WNSMI   VR G  
Sbjct: 263 HGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLG 322

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LF+ ++   +  ++ D F   +V+   + +  +     +HS I+  G +   ++ 
Sbjct: 323 EEALSLFRIMH---LRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVN 379

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV++Y K G F+ A  V                               F++ TD   +
Sbjct: 380 NALVDMYAKRGYFDYAFDV-------------------------------FEKMTDKDVI 408

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W S+++G + N    EAL LF +MR  G+  D   +A+VLSAC+ L  LE GKQVH + 
Sbjct: 409 SWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANF 468

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR----- 385
            K G+   + V ++L+  Y+K G   DA K+F  +++ D I    +I  Y+  GR     
Sbjct: 469 LKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDHA 528

Query: 386 --IEDAKHIFRTMPNKSLIS-----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
             +E  +  F++M     I      +  MI  L ++G  +EA +L   +N++ ++ D   
Sbjct: 529 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKEL---LNQMAVQPDATV 585

Query: 439 LASVISACANISSLELGEQ 457
             ++++AC    ++ELGE+
Sbjct: 586 WKALLAACRVHGNVELGER 604



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 195/445 (43%), Gaps = 97/445 (21%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N +L    +CG   DA  LFD MP R+  SWN MI  +   G   ++ +LF   P ++ 
Sbjct: 44  SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            +W+ LISG+ + G                         C V      EA+ LF E+   
Sbjct: 104 ITWSSLISGYCRYG-------------------------CDV------EALELFWEMQ-- 130

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             E  + + F   +V+  C+    LE GKQIH+H +    D ++ + + LV++Y KC   
Sbjct: 131 -YEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKC--- 186

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISN 282
                                      C  + +A  +F+   D  + V+W +M++GY  N
Sbjct: 187 --------------------------KC--ILEAEYLFELAPDKRNHVLWTAMVTGYSQN 218

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
            +  +A+  F  MR  G+  +  T  S+L+AC S+     G QVHG   + G   +V V 
Sbjct: 219 GDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVG 278

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           SAL+D YSK G  S+A ++   ++V D +  N+M                          
Sbjct: 279 SALVDMYSKCGDLSNARRMLETMEVDDPVSWNSM-------------------------- 312

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
                IVG  + G   EAL LF  M+   +++D+F+  SV++  + +  +     V + +
Sbjct: 313 -----IVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLI 367

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFI 487
              G ++ ++++ +LVD Y K G+ 
Sbjct: 368 VKTGFEAYKLVNNALVDMYAKRGYF 392



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%)

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C  L   E    +       G +     ++ +L   SK G   DA KLF  +   D    
Sbjct: 16  CHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW 75

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI  Y++ GR+ +A+ +F   P +S I+W+S+I G  + G  +EAL+LF  M     R
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            ++F+  SV+  C+    LE G+Q+ A       DS+  + T LVD Y KC  I   EY
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEY 194



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 37/232 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C     +  GKQ+H +FLK G L S+L + N L+ MY +CG   DA  +FD M
Sbjct: 445 IAAVLSACAELTVLEFGKQVHANFLKSG-LGSSLSVDNSLVSMYAKCGCIEDANKVFDSM 503

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  +W A+I G+ + G                         G   AG ++  R+ F 
Sbjct: 504 EIQDVITWTALIVGYAQNGR------------------------GRDHAGLVEHGRSYFQ 539

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M     I      +  MI    R+G   EA  L  ++       +Q DA +   ++ AC
Sbjct: 540 SMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMA------VQPDATVWKALLAAC 593

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
                +E G++  ++ L      ++V    L NLY   G +  A +   +MK
Sbjct: 594 RVHGNVELGERAANN-LFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMK 644


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 133/519 (25%), Positives = 222/519 (42%), Gaps = 105/519 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C    S+ +G+QLH   LK G  + T  + N L+ +Y   G+   A  +F  M
Sbjct: 274 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY-VCNALVSLYFHLGSLISAEHIFSNM 332

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND------------------ 103
            +R+  ++N +I G  + G+ EK+++LF  M      P  N                   
Sbjct: 333 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQ 392

Query: 104 ----------FSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                     F+ N  I G     +AK  +++TA   F +    N + WN M+  Y    
Sbjct: 393 QLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLD 452

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             R + R+F+++    +E +  + +   +++  C  L  LE G+QIHS I+      ++ 
Sbjct: 453 DLRNSFRIFRQMQ---IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA- 508

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                         +  S LI  YA  GK++ A  +  R     
Sbjct: 509 ------------------------------YVCSVLIDMYAKLGKLDTAWDILIRFAGKD 538

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W +MI+GY   N D +AL  F +M   G+  D   L + +SAC+ L  L+ G+Q+H 
Sbjct: 539 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 598

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            AC  G   D+   +AL+  YSK                               CG IE+
Sbjct: 599 QACVSGFSSDLPFQNALVTLYSK-------------------------------CGNIEE 627

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F        I+WN+++ G  Q+G+  EAL +F  MN+  +  + F+  S + A + 
Sbjct: 628 AYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASE 687

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            ++++ G+QV A +T  G DS+  +  +++  Y KCG I
Sbjct: 688 TANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSI 726



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 135/531 (25%), Positives = 225/531 (42%), Gaps = 110/531 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+ +C++  ++  G+QLH +  K G   S   I   LL +Y +C +   AL  F E 
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLG-FASNDKIEGALLNLYAKCSDIETALNYFLET 433

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
              N   WN M+  +  L     S ++F  M                             
Sbjct: 434 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 493

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      Q N +  ++LI  +AK G+L TA  +      ++ ++W +MI  Y +  
Sbjct: 494 QIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 553

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  +A+  F+++   L   ++ D   L   + ACA L AL+ G+QIH+   V+G   D  
Sbjct: 554 FDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 610

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             ++LV LY K                               CG + +A   F++T    
Sbjct: 611 FQNALVTLYSK-------------------------------CGNIEEAYLAFEQTEAGD 639

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ WN+++SG+  +  + EAL +F +M R G+  +  T  S + A S    ++ GKQVH 
Sbjct: 640 NIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHA 699

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD--TILLNTMITVYSSCGRI 386
              K G                                 YD  T + N +I++Y+ CG I
Sbjct: 700 VITKTG---------------------------------YDSETEVCNAIISMYAKCGSI 726

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            DAK  F  +  K+ +SWN+MI   S++G   EALD F  M   ++R +  +L  V+SAC
Sbjct: 727 SDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC 786

Query: 447 ANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++I  ++ G + F  + T  GL         +VD   + G +   + ++++
Sbjct: 787 SHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILE 837



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 156/596 (26%), Positives = 241/596 (40%), Gaps = 144/596 (24%)

Query: 8   LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  LL+ C  T+ S+  G++LH   LK G  N+   ++ +LL  Y+  G+   AL +FDE
Sbjct: 70  LKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNAC-LSEKLLDFYLFKGDLDGALKVFDE 128

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG--------- 117
           MP R  F+WN MI+         K   LF  M  +N        SG  +A          
Sbjct: 129 MPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDV 188

Query: 118 -ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL---------------- 160
            E   AR ++  + + + I  N +I  Y RNGF   A R+F  L                
Sbjct: 189 VEQIHARIIYQGLGK-STIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLS 247

Query: 161 -NSDLVE--RLQCDAFIL---------ATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            N   VE  RL CD ++L         ++V+ AC  + +LE G+Q+H  +L  G   D+ 
Sbjct: 248 KNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 307

Query: 209 LGSSLVNLY-------------------------------GKCGDFNSANQVLNMMK--- 234
           + ++LV+LY                                +CG    A ++   M+   
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG 367

Query: 235 -EPDDFCLSALI----------SG-------------------------YANCGKMNDAR 258
            EPD   L++L+          SG                         YA C  +  A 
Sbjct: 368 LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETAL 427

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
             F  T   + V+WN M+  Y   ++   +  +F +M+   ++ +  T  S+L  C  LG
Sbjct: 428 NYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            LE G+Q+H    K     +  V S L+D Y+K                           
Sbjct: 488 DLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAK--------------------------- 520

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
                G+++ A  I      K ++SW +MI G +Q     +AL  F  M    +R D+  
Sbjct: 521 ----LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 576

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           L + +SACA + +L+ G+Q+ A+  + G  SD     +LV  Y KCG I  +E YL
Sbjct: 577 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNI--EEAYL 630



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 171/381 (44%), Gaps = 66/381 (17%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G+L  A  +F++MP R    WN MI        + +   LF  +   + E +  +    +
Sbjct: 117 GDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRM---VNENVTPNEGTFS 173

Query: 177 TVIGAC-ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            V+ AC     A +  +QIH+ I+  GL   +++ + L++LY + G              
Sbjct: 174 GVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNG-------------- 219

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                             ++ ARRVFD         W +MISG   N  + EA+ LF  M
Sbjct: 220 -----------------FVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDM 262

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
              G++      +SVLSAC  +  LE G+Q+HG   K+G                     
Sbjct: 263 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG--------------------- 301

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                 FS     DT + N ++++Y   G +  A+HIF  M  +  +++N++I GLSQ G
Sbjct: 302 ------FSS----DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCG 351

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A++LF  M    L  D  +LAS++ AC++  +L  G+Q+ A  T +G  S+  I  
Sbjct: 352 YGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEG 411

Query: 476 SLVDFYCKCGFIKMDEYYLMQ 496
           +L++ Y KC  I+    Y ++
Sbjct: 412 ALLNLYAKCSDIETALNYFLE 432



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 129/332 (38%), Gaps = 106/332 (31%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   + +C    ++  G+Q+H      G  +S LP  N L+ +Y +CGN  +A L F++ 
Sbjct: 577 LTNAVSACAGLQALKEGQQIHAQACVSG-FSSDLPFQNALVTLYSKCGNIEEAYLAFEQT 635

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
              +  +WNA++ GF + G+ E++L++F  M ++    N+F++                 
Sbjct: 636 EAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGK 695

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN- 147
                             N +IS +AK G +  A+  F ++  +N ++WN+MI+ Y ++ 
Sbjct: 696 QVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHG 755

Query: 148 ----------------------------------GFAREAVRLFKELNS----------- 162
                                             G   + +  F+ +N+           
Sbjct: 756 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHY 815

Query: 163 ----DLVER---------------LQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
               D++ R               ++ DA +  T++ AC     +E G +  +H L+   
Sbjct: 816 VCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIG-EFAAHHLLELE 874

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             DS     L NLY  C  +++ +     MKE
Sbjct: 875 PEDSATYVLLSNLYAVCRKWDARDLTRQKMKE 906


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 142/526 (26%), Positives = 241/526 (45%), Gaps = 112/526 (21%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T  + L  L++ C + + +   KQ+H   L    +NS +P  N LL   +   +   A L
Sbjct: 31  TLTEKLLSLIKQCKSKNLL---KQIHAQML----INS-IPKPNFLLSKIIDLKDLAYASL 82

Query: 63  LFDEMPRRNCFSWNAMIEGF----------MKLGHKEKSLQL------------------ 94
           +F+++ + N +++N M+ G           ++L +K KSL L                  
Sbjct: 83  VFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVR 142

Query: 95  ------------FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                       F      +++  + LI+ +A+ GE+  AR +F++M  R+ ++WNSMI 
Sbjct: 143 GLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMIS 202

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y + GF +EA+ LF E+     E  + D   L +V+GAC DL  L  G+ +   +L   
Sbjct: 203 GYSKMGFTKEAIGLFMEMRE---EGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKK 259

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           ++ +S +GS+L+++                               Y  CG +  ARRVFD
Sbjct: 260 MEVNSYMGSALIDM-------------------------------YGKCGDLISARRVFD 288

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
              +   V WN++I+GY  N    EA++LF+ MR  G   D  T+  VLSACS++G L+ 
Sbjct: 289 SMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDL 348

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK V  HA + G+  DV VASAL+D Y+K G   DA ++F  +   + +  N MI+  + 
Sbjct: 349 GKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAF 408

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
            G+ ++A  +FR M               S++   ++  D+              +   V
Sbjct: 409 HGQAQEALSLFRRM---------------SKDNGTVQPNDI--------------TFIGV 439

Query: 443 ISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFI 487
           +SAC +   ++ G Q+F  + +  GL       + +VD   + G +
Sbjct: 440 LSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLL 485


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 216/487 (44%), Gaps = 120/487 (24%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y + G    A  LF+EMP RN  SWNAM+ G++  GH EK+++ F +MP+++  
Sbjct: 156 NTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSA 215

Query: 105 S------------------------------------WNMLISGFAKAGELKTARTLFND 128
           S                                    +N LI+G+ + G    AR LF+ 
Sbjct: 216 SLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDR 275

Query: 129 MP--------RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           +P        RRN I+WNSMI CYVR G    A  LF ++    VER   D F   T+I 
Sbjct: 276 IPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKM----VER---DTFSWNTMIS 328

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
                                               Y +  D   A+ + + M EPD   
Sbjct: 329 G-----------------------------------YVQILDMKEASNLFSRMPEPDTLS 353

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + +ISG++  G +  A  +F R  + S V WNSMISGY  N +   A+ +F +M+  G 
Sbjct: 354 WNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGK 413

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  TL+S+LSAC+ L  L  G Q+H                                +
Sbjct: 414 KPDRHTLSSILSACAGLVDLVLGTQIH--------------------------------Q 441

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIE 419
           L ++  + D  + N+++T+YS CG I +A+ +F  M   + +ISWN+MI G + +G   E
Sbjct: 442 LVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATE 501

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLV 478
           AL LF  M + +++    +  SV++ACA+   +E G + F + V   G+        +LV
Sbjct: 502 ALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALV 561

Query: 479 DFYCKCG 485
           D   + G
Sbjct: 562 DIIGRHG 568



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 212/461 (45%), Gaps = 103/461 (22%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK--EKSLQLFNVMPQKN 102
           NR++  Y++      A  LF+EMP R+  SWN M+ G++  G K  E++  +F+ MP+ +
Sbjct: 92  NRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETD 151

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF---AREAVRLFKE 159
             SWN ++SG+AK+G +  A  LFN+MP RN ++WN+M+  Y+ NG    A E  +L  +
Sbjct: 152 CVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPK 211

Query: 160 LNSDLVERL-----QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            +S  +  L     Q D  + A  I        L+YG  +    LV+  +          
Sbjct: 212 RDSASLRALISGLIQNDKLVEAERI-------LLQYGGNVGKGDLVDAYN---------- 254

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT--------TD 266
                                        LI+GY   G   +AR++FDR         + 
Sbjct: 255 ----------------------------TLIAGYGQKGMAYEARKLFDRIPLCCDCGYSR 286

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + + WNSMI  Y+   +   A  LF KM    V  D  +  +++S     G+++     
Sbjct: 287 RNVISWNSMIMCYVRAGDIVSARELFDKM----VERDTFSWNTMIS-----GYVQ----- 332

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
                             +LD         +A  LFS +   DT+  N MI+ +S  G +
Sbjct: 333 ------------------ILDM-------KEASNLFSRMPEPDTLSWNMMISGFSEIGSL 367

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + A  +F+ +P KSL+SWNSMI G  +N     A+++F  M     + D+ +L+S++SAC
Sbjct: 368 KLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC 427

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           A +  L LG Q+   VT     +D  I+ SLV  Y +CG I
Sbjct: 428 AGLVDLVLGTQIHQLVT-KAFIADLPINNSLVTMYSRCGAI 467



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 37/323 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R G+   A  LFD+M  R+ FSWN MI G++++   +++  LF+ MP+ +  
Sbjct: 293 NSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTL 352

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWNM+ISGF++ G LK A  LF  +P ++ ++WNSMI  Y +N   + A+ +F ++    
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQ--- 409

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +E  + D   L++++ ACA L  L  G QIH  ++      D  + +SLV +Y +CG   
Sbjct: 410 LEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTMYSRCGAIV 468

Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            A  V + M  + D    +A+I GYA  G                               
Sbjct: 469 EARMVFDEMNLQRDVISWNAMIGGYAYHGFA----------------------------- 499

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVA 342
             TEAL LF  M++  V     T  SVL+AC+  G +E G++         G+   V   
Sbjct: 500 --TEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHY 557

Query: 343 SALLDTYSKRGMPSDACKLFSEL 365
           +AL+D   + G   +A  L + +
Sbjct: 558 AALVDIIGRHGQLEEAMSLINSM 580



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 17/265 (6%)

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           N  + P+ + L+  IS     G++N+AR +FD T   +++ WN MI+ Y+   E  +A  
Sbjct: 50  NSFQVPEFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQ 109

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF +M    ++     L+  +S      F+E  + +     +     D +  + +L  Y+
Sbjct: 110 LFEEMPNRDIVSWNLMLSGYISCGGK--FVERARNMFDQMPET----DCVSWNTMLSGYA 163

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K GM   A +LF+E+   + +  N M++ Y   G +E A   F+ MP +   S  ++I G
Sbjct: 164 KSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISG 223

Query: 411 LSQNGSPIEA----LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-- 464
           L QN   +EA    L    N+ K DL +D ++  ++I+            ++F R+ +  
Sbjct: 224 LIQNDKLVEAERILLQYGGNVGKGDL-VDAYN--TLIAGYGQKGMAYEARKLFDRIPLCC 280

Query: 465 -IGLDSDQIIS-TSLVDFYCKCGFI 487
             G     +IS  S++  Y + G I
Sbjct: 281 DCGYSRRNVISWNSMIMCYVRAGDI 305



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C     + +G Q+H    K  I  + LPI N L+ MY RCG   +A ++FDEM
Sbjct: 420 LSSILSACAGLVDLVLGTQIHQLVTKAFI--ADLPINNSLVTMYSRCGAIVEARMVFDEM 477

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSWNMLIS---GFAKAGELKTA 122
             +R+  SWNAMI G+   G   ++LQLF++M Q N   S+   IS     A AG ++  
Sbjct: 478 NLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEG 537

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           R  FN M   + I      + +++    R+G   EA+ L   +        + D  +   
Sbjct: 538 RREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPC------EPDKAVWGA 591

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           ++GAC     +E  +     ++   L  +S     L+ N+Y   G ++ A ++  MM++
Sbjct: 592 LLGACKVHNNVEMARAAAEALM--KLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEK 648


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 200/443 (45%), Gaps = 53/443 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N  +  + R G    A  +FDEM  RN F+WN M+ G  + G    +  +F+ MP +N  
Sbjct: 40  NSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMPSRNSV 99

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  L++G+A+ G +  AR LF+ MP RN ++WN+M+  Y+RNG    A  LF  + +  
Sbjct: 100 SWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPA-- 157

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
               + D   L  V G        E  ++I            + + ++L++ Y   G   
Sbjct: 158 ----RDDVSWLMMVSGYMRRKRFRE-AREIFDRAPSPP---PTSVCNALLSGYAGYGYLK 209

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A ++   M+ PD    +A+I+GY   G M  ARR+FD      +V W +++ GY+ N +
Sbjct: 210 DAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGD 269

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              A  +F  M    VL   + +          GF                     V S 
Sbjct: 270 VDAAWEVFQDMPDRDVLAWNTMMG---------GF---------------------VVSD 299

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
            LD         DA +LF+++   D +  NT++  Y   G ++ A   FR+M  K   SW
Sbjct: 300 RLD---------DALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSW 350

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++I G    G    AL L   M +   R D+ + + VIS CA++++L  G  V      
Sbjct: 351 NTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIK 406

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
            G + D ++ +SL+  Y KCG I
Sbjct: 407 TGFEHDALVMSSLISMYSKCGLI 429



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 196/441 (44%), Gaps = 70/441 (15%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y R G   +A  LFD MP RN  SWNAM+ G+++ G  +++ +LF+ MP ++D SW
Sbjct: 104 LLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDDVSW 163

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAW-NSMIHCYVRNGFAREAVRLFKELNSDLV 165
            M++SG+ +    + AR +F+  P     +  N+++  Y   G+ ++A  LF  +     
Sbjct: 164 LMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQRP-- 221

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           +R+  +A I                  Q+   +       D+V  +++V  Y + GD ++
Sbjct: 222 DRVSWNAMITGYTRAGMM---------QVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDA 272

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI----- 280
           A +V   M + D    + ++ G+    +++DA R+F    D   V WN+++ GYI     
Sbjct: 273 AWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDM 332

Query: 281 ----------------------SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
                                 S  +D  AL L  +M R G   D +T + V+S C+SL 
Sbjct: 333 DSATTWFRSMLEKDETSWNTVISGYKDEGALSLLSEMTRGGYRPDQATWSVVISVCASLA 392

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G+ VH    K G   D +V S+L                               I+
Sbjct: 393 ALGCGRMVHICTIKTGFEHDALVMSSL-------------------------------IS 421

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +YS CG I +A  +F  +  +  ++WN+MI   + +G   EAL LF  M K     D  +
Sbjct: 422 MYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDHAT 481

Query: 439 LASVISACANISSLELGEQVF 459
             SV+SACA+   L  G   F
Sbjct: 482 FLSVLSACAHKGYLYEGCHYF 502



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 175/419 (41%), Gaps = 96/419 (22%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           + N LL  Y   G   DA  LF  M R +  SWNAMI G+ + G  + + +LF+ MP K+
Sbjct: 194 VCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKD 253

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL-N 161
             SW  ++ G+ + G++  A  +F DMP R+ +AWN+M+  +V +    +A+RLF ++ +
Sbjct: 254 TVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPD 313

Query: 162 SDLVER-----------------------LQCDAFILATVIGA----------------- 181
            DLV                         L+ D     TVI                   
Sbjct: 314 RDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGYKDEGALSLLSEMTRGG 373

Query: 182 --------------CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
                         CA LAAL  G+ +H   +  G + D+++ SSL+++Y KCG    A+
Sbjct: 374 YRPDQATWSVVISVCASLAALGCGRMVHICTIKTGFEHDALVMSSLISMYSKCGLITEAS 433

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           QV +++ + D    +A+I+ YA  G                                  E
Sbjct: 434 QVFDLIVQRDTVTWNAMIATYAYHGLA-------------------------------AE 462

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALL 346
           AL LF +M ++    D +T  SVLSAC+  G+L  G            ++      S ++
Sbjct: 463 ALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMV 522

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED-------AKHIFRTMPN 398
           D   + G    A       K+   + +N   T++SSC    D       AK++ ++ P+
Sbjct: 523 DLLGRSGFVHQAYNF--TRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPS 579



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 119/237 (50%), Gaps = 23/237 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++  C +  ++  G+ +H+  +K G  +  L + + L+ MY +CG  T+A  +FD + +R
Sbjct: 384 VISVCASLAALGCGRMVHICTIKTGFEHDAL-VMSSLISMYSKCGLITEASQVFDLIVQR 442

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-----LISGFAKAGEL------ 119
           +  +WNAMI  +   G   ++L LF+ M  K+ FS +      ++S  A  G L      
Sbjct: 443 DTVTWNAMIATYAYHGLAAEALALFDRM-TKDRFSPDHATFLSVLSACAHKGYLYEGCHY 501

Query: 120 -KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            ++ +  +N +PR +   ++ M+    R+GF  +A    +++ S+L    Q +A+   T+
Sbjct: 502 FRSMQQDWNLVPRSDH--YSCMVDLLGRSGFVHQAYNFTRKIPSNL----QINAW--ETL 553

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             +C     ++ G+ +  ++L      D  + + L N+Y   G ++SA  V  +MKE
Sbjct: 554 FSSCNAHGDIQLGELVAKNVL-QSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKE 609


>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
          Length = 661

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 210/443 (47%), Gaps = 46/443 (10%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y++ G    A  LFD M  +N  +W  M+ G+ + G  +++ +LF++MP +N FSW
Sbjct: 129 MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSW 188

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++ G+A  G L+ AR +F+ MP RN +AW  M+  YV NG  +EA+ LF  +    + 
Sbjct: 189 TTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQ--MN 246

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               +A     +     D A   + K  H ++         V  + +V    + G  + A
Sbjct: 247 SYSWNAMATGLMSAGKVDDAVQLFDKMPHKNV---------VSWTIMVTGLAQNGFVSRA 297

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +  + M + D    +++I+ Y N G++NDA+R+FD     + V WN +I GY  NN   
Sbjct: 298 REFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKD 357

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL LF  M R+ V  D++TL SVL    S   +   +Q+HG + K+G   +  + + L+
Sbjct: 358 EALRLFLLMLRSAVSPDSTTLISVLVVSESTMEV---RQIHGLSTKLGYQPETNLGNTLV 414

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             YS+ G  S A   F                               R +  K  I+W S
Sbjct: 415 SMYSRSGDLSSAWLAF-------------------------------RRLNEKDAITWTS 443

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-II 465
           MI  L+ +G    AL  F  M +   +    +  +V+SAC ++  +E G ++F  ++ + 
Sbjct: 444 MIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVY 503

Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
           GL+      + LVD   + G+++
Sbjct: 504 GLEPTIEHYSCLVDLLGRAGYVR 526



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 166/361 (45%), Gaps = 51/361 (14%)

Query: 31  FLKKGILNSTLPIANRLLQM-----------YMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G +   L + NR+ QM            M  G   DA+ LFD+MP +N  SW  M+
Sbjct: 226 YVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMV 285

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            G  + G   ++ + F+ MP+K+  +WN +I+ +   G++  A+ LF+ MP +N + WN 
Sbjct: 286 TGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNI 345

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  Y  N    EA+RLF  +   L   +  D+  L +V+      + +E  +QIH    
Sbjct: 346 IIDGYSMNNLKDEALRLFLLM---LRSAVSPDSTTLISVL--VVSESTMEV-RQIHGLST 399

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             G   ++ LG++LV++Y + GD +SA      + E D                      
Sbjct: 400 KLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKD---------------------- 437

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                    ++ W SMI    ++     AL  F +M R G    ++T  +VLSAC+ +G 
Sbjct: 438 ---------AITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGL 488

Query: 320 LEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTM 376
           +E G+++      V  ++  I   S L+D   + G   +A ++   ++  + D  +L T+
Sbjct: 489 VEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTL 548

Query: 377 I 377
           +
Sbjct: 549 L 549



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 181/363 (49%), Gaps = 23/363 (6%)

Query: 125 LFNDMPRRN-AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           +F+ MPRR+ A+A+ +M+  ++ +     A  L++    D      C    L TV+    
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPD------CRGIHLDTVMLD-- 131

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
               ++ G+   +  L +G+   +V+  + +V+ Y + G  + A ++ ++M   + F  +
Sbjct: 132 --GYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWT 189

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
            ++ GYA+ G + +AR +FD+  + + V W  M+  Y+ N    EAL LF++M +     
Sbjct: 190 TMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQ----M 245

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           ++ +  ++ +   S G ++   Q+        V+   I+ + L    ++ G  S A + F
Sbjct: 246 NSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGL----AQNGFVSRAREFF 301

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   D    N+MIT Y++ G++ DA+ +F  MP+K+L++WN +I G S N    EAL 
Sbjct: 302 DRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALR 361

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           LF  M +  +  D  +L SV+    + S++E+  Q+    T +G   +  +  +LV  Y 
Sbjct: 362 LFLLMLRSAVSPDSTTLISVL--VVSESTMEV-RQIHGLSTKLGYQPETNLGNTLVSMYS 418

Query: 483 KCG 485
           + G
Sbjct: 419 RSG 421



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 22/222 (9%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           +Q+H    K G    T  + N L+ MY R G+ + A L F  +  ++  +W +MI+    
Sbjct: 392 RQIHGLSTKLGYQPET-NLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALAN 450

Query: 85  LGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-- 136
            G    +LQ F  M      P    F+   ++S     G ++  R +F  +     +   
Sbjct: 451 HGCAPCALQGFAQMLRCGYKPSSTTFT--AVLSACNHVGLVEKGRKIFKSISHVYGLEPT 508

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              ++ ++    R G+ REA    KE+  D ++R  CD  IL T++G+C     +E G+ 
Sbjct: 509 IEHYSCLVDLLGRAGYVREA----KEV-VDGMQRDMCDEAILGTLLGSCMTHNEVEVGRA 563

Query: 194 IHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
           +   ++   +D     G +L+ N++   G +N    V  +MK
Sbjct: 564 VGEDLV--KIDPSGSGGYTLLANVFASGGMWNEVASVWKIMK 603


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 148/571 (25%), Positives = 239/571 (41%), Gaps = 146/571 (25%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           +Q+H   L  G +N +L + +R+L MY+ C +  D   LF  +       WN +I GF  
Sbjct: 96  RQIHAKVLVCG-MNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSM 154

Query: 85  LGHKEKSLQLF------NVMPQKNDFSW-------------------------------- 106
           LG  + +L  F      NV P K  F +                                
Sbjct: 155 LGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFI 214

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            + LI  +   G +  A+ LF+++P R+ I WN M++ YV+NG    A+  F+E+ +  V
Sbjct: 215 GSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCV 274

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           +    ++     ++  CA    +  G Q+H  ++ +G + D  + ++++ +Y K      
Sbjct: 275 KP---NSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSK------ 325

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG + DAR++FD    T +V WN +I+GY+ N   
Sbjct: 326 -------------------------CGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFT 360

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV---------- 335
            EA+ LF  M  +GV  D+ T AS L +    G L++ K+VH +  + GV          
Sbjct: 361 DEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSAL 420

Query: 336 ---------------------IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
                                + DV V +A++  Y   G+  +A  LF  L + + ++ N
Sbjct: 421 VDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWL-IQEGMVPN 479

Query: 375 --TMITVYSSC--------------------------------------GRIEDAKHIFR 394
             TM +V  +C                                      GR++ A   FR
Sbjct: 480 CLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFR 539

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP K  + WN MIV  SQNG P  A+DLF  M     + D  SL++ +SACAN  +L  
Sbjct: 540 RMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYY 599

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G+++   V      SD  ++++L+D Y KCG
Sbjct: 600 GKELHCFVVRNSFISDTFVASTLIDMYSKCG 630



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 223/515 (43%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C T   +  G QLH   ++ G   S   +AN ++ MY +CGN  DA  +FD MP+ 
Sbjct: 284 LLSVCATRGIVRAGIQLHGLVIRSG-FESDPTVANTIITMYSKCGNLFDARKIFDIMPQT 342

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------DFSWNMLISG--------- 112
           +  +WN +I G+++ G  ++++ LF  M              F  ++L SG         
Sbjct: 343 DTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVH 402

Query: 113 ---------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                + K G+++ A   F      +     +MI  YV NG   
Sbjct: 403 SYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNV 462

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+ L   + E +  +   +A+V+ ACA LA+L+ GK++H  IL  GL+    +GS
Sbjct: 463 EALNLFRWL---IQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGS 519

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           S+  +Y K G                               +++ A + F R     SV 
Sbjct: 520 SITYMYAKSG-------------------------------RLDLAYQFFRRMPVKDSVC 548

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN MI  +  N +   A+ LF +M  +G   D+ +L++ LSAC++   L +GK++H    
Sbjct: 549 WNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVV 608

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +   I D  VAS L+D YSK                               CG++  A+ 
Sbjct: 609 RNSFISDTFVASTLIDMYSK-------------------------------CGKLALARS 637

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  M  K+ +SWNS+I     +G P E LDLF  M +  ++ D  +   ++SAC +   
Sbjct: 638 VFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGL 697

Query: 452 LELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG 485
           ++ G   F  +T   G+ +       +VD Y + G
Sbjct: 698 VDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAG 732



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 48/298 (16%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK+G L  A   F  MP ++++ WN MI  + +NG    A+ LF+++ +      + D+
Sbjct: 525 YAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTS---GTKFDS 581

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
             L+  + ACA+  AL YGK++H  ++ N    D+ + S+L+++                
Sbjct: 582 VSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDM---------------- 625

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                          Y+ CGK+  AR VFD     + V WNS+I+ Y ++    E L LF
Sbjct: 626 ---------------YSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLF 670

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC---KVGVIDDVIVASALLDTY 349
           H+M   G+  D  T   ++SAC   G ++ G  ++   C   + G+   +   + ++D Y
Sbjct: 671 HEMVEAGIQPDHVTFLVIMSACGHAGLVDEG--IYYFRCMTEEYGICARMEHFACMVDLY 728

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSC---GRIEDA----KHIFRTMPNKS 400
            + G   +A      +    T    T  ++  +C   G +E A    KH+    PN S
Sbjct: 729 GRAGRLHEAFDTIKSMPF--TPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNS 784



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 114/271 (42%), Gaps = 45/271 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S+ +GK+LH   LKKG+ N    + + +  MY + G    A   F  M
Sbjct: 483 MASVLPACAALASLKLGKELHCDILKKGLEN-VCQVGSSITYMYAKSGRLDLAYQFFRRM 541

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P ++   WN MI  F + G  E ++ LF  M                             
Sbjct: 542 PVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGK 601

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + F  + LI  ++K G+L  AR++F+ M  +N ++WNS+I  Y  +G
Sbjct: 602 ELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHG 661

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
             RE + LF E+   +   +Q D      ++ AC     ++ G      +    G+    
Sbjct: 662 RPRECLDLFHEM---VEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARM 718

Query: 208 VLGSSLVNLYGKCGDFNSA-NQVLNMMKEPD 237
              + +V+LYG+ G  + A + + +M   PD
Sbjct: 719 EHFACMVDLYGRAGRLHEAFDTIKSMPFTPD 749



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%)

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           M+ +Y  C   +D  ++F  +     + WN +I G S  G    AL  F  M   ++  D
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPD 176

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           K++   VI AC  ++++ L + V      +G   D  I +SL+  Y   G+I   +Y
Sbjct: 177 KYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKY 233


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 223/484 (46%), Gaps = 105/484 (21%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN---VMP-- 99
           N  L+  ++ G    +  +FD+M  R+  SW  +I G++      ++L LF+   V P  
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 100 QKNDF---------------SWNMLISGFA--------------------KAGELKTART 124
           Q++ F                +  L+ GF+                    K G+++    
Sbjct: 154 QRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCR 213

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F  M +RN ++W ++I   V  G+  EA+  F E+    + ++  D+   A  + A AD
Sbjct: 214 VFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEM---WISKVGYDSHTFAIALKASAD 270

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
            + L +GK IH+  +  G D  S + ++L  +Y K                         
Sbjct: 271 SSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNK------------------------- 305

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                 CGK +   R+F++      V W ++I+ Y+   E+  A+  F +MR++ V  + 
Sbjct: 306 ------CGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNK 359

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T A+V+SAC++L   + G+Q+HGH  ++G++D + VA                      
Sbjct: 360 YTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVA---------------------- 397

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                    N+++T+YS  G ++ A  +F  +  K +ISW+++I   SQ G   EA D  
Sbjct: 398 ---------NSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYL 448

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M +   + ++F+L+SV+S C +++ LE G+QV A V  IG+D + ++ ++L+  Y KC
Sbjct: 449 SWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKC 508

Query: 485 GFIK 488
           G ++
Sbjct: 509 GSVE 512



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 223/528 (42%), Gaps = 116/528 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    +I  G+ LH   +K G++NS   +++ L+ MYM+ G       +F +M +RN
Sbjct: 164 LKACGLGVNICFGELLHGFSVKSGLINSVF-VSSALIDMYMKVGKIEQGCRVFKKMTKRN 222

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP-------------------------------- 99
             SW A+I G +  G+  ++L  F+ M                                 
Sbjct: 223 VVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHT 282

Query: 100 -------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                   ++ F  N L + + K G+      LF  M   + ++W ++I  YV+ G    
Sbjct: 283 QTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEH 342

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           AV  FK +    V     + +  A VI ACA+LA  ++G+QIH H+L  GL     + +S
Sbjct: 343 AVEAFKRMRKSNVSP---NKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANS 399

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           +V LY K G   SA+                                VF   T    + W
Sbjct: 400 IVTLYSKSGLLKSAS-------------------------------LVFHGITRKDIISW 428

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           +++I+ Y       EA      MRR G   +   L+SVLS C S+  LE GKQVH H   
Sbjct: 429 STIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLC 488

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  + +V SAL+  YSK G   +A K+F+ +K+ + I    MI               
Sbjct: 489 IGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMIN-------------- 534

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
                            G +++G   EA++LF  ++ + L+ D  +   V++AC++   +
Sbjct: 535 -----------------GYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMV 577

Query: 453 ELGEQVFARVTIIGLDSDQIISTS------LVDFYCKCGFIKMDEYYL 494
           +LG   F  +T     ++  IS S      ++D  C+ G +   E+ +
Sbjct: 578 DLGFYYFMLMT-----NEYQISPSKEHYGCIIDLLCRAGRLSEAEHMI 620



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 169/393 (43%), Gaps = 64/393 (16%)

Query: 96  NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
           N     N    N  +    K G+L  +R +F+ M  R+ I+W ++I  YV    + EA+ 
Sbjct: 83  NAYSVHNMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALI 142

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           LF   N  +   LQ D F+++  + AC     + +G+ +H   + +GL     + S+L++
Sbjct: 143 LFS--NMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALID 200

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y K G                               K+    RVF + T  + V W ++
Sbjct: 201 MYMKVG-------------------------------KIEQGCRVFKKMTKRNVVSWTAI 229

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I+G +    + EALL F +M  + V  D+ T A  L A +    L HGK +H    K G 
Sbjct: 230 IAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGF 289

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
            +   V + L   Y+K G      +LF ++K+ D +   T+IT Y               
Sbjct: 290 DESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTY--------------- 334

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
                            Q G    A++ F  M K ++  +K++ A+VISACAN++  + G
Sbjct: 335 ----------------VQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWG 378

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           EQ+   V  +GL     ++ S+V  Y K G +K
Sbjct: 379 EQIHGHVLRLGLVDALSVANSIVTLYSKSGLLK 411



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 43/223 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ +C        G+Q+H H L+ G++++ L +AN ++ +Y + G    A L+F  +
Sbjct: 362 FAAVISACANLAIAKWGEQIHGHVLRLGLVDA-LSVANSIVTLYSKSGLLKSASLVFHGI 420

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW----------------- 106
            R++  SW+ +I  + + G+ +++    + M    P+ N+F+                  
Sbjct: 421 TRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGK 480

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + LIS ++K G ++ A  +FN M   N I+W +MI+ Y  +G
Sbjct: 481 QVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHG 540

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +++EA+ LF++++S     L+ D      V+ AC+    ++ G
Sbjct: 541 YSQEAINLFEKISS---VGLKPDYVTFIGVLTACSHAGMVDLG 580



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 21/238 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C +   +  GKQ+H H L  GI +  + + + L+ MY +CG+  +A  +F+ M
Sbjct: 463 LSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAM-VHSALISMYSKCGSVEEASKIFNGM 521

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
              N  SW AMI G+ + G+ ++++ LF  +     K D+ ++  +++  + AG +    
Sbjct: 522 KINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGF 581

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I+     +  +I    R G   EA  + + +          D  + +T+
Sbjct: 582 YYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMP------CYTDDVVWSTL 635

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGS--SLVNLYGKCGDFNSANQVLNMMK 234
           + +C     ++ G+     +L   LD +S  G+  +L N+Y   G +  A  +  +MK
Sbjct: 636 LRSCRVHGDVDRGRWTAEQLL--RLDPNSA-GTHIALANIYAAKGRWKEAAHIRKLMK 690



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 11/152 (7%)

Query: 348 TYSKRGMPSDACKLFSELK----------VYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           TYS  G  ++  +L  + K          V++ + LN+ +      G++  ++++F  M 
Sbjct: 58  TYSSPGTATECRELIQQAKQEQLAQNAYSVHNMLELNSELKQLVKQGQLCKSRYMFDKMT 117

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGE 456
           ++  ISW ++I G        EAL LF NM  +  L+ D+F ++  + AC    ++  GE
Sbjct: 118 HRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGE 177

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +       GL +   +S++L+D Y K G I+
Sbjct: 178 LLHGFSVKSGLINSVFVSSALIDMYMKVGKIE 209


>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 616

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 239/526 (45%), Gaps = 112/526 (21%)

Query: 4   RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           R+DY  LA  LQS N    I   K++H   LK    +  +   N L+   +R G+   A 
Sbjct: 82  RVDYALLAEWLQSSNGMRLI---KRIHAMALK-CFDDQVIYFGNNLISSCVRLGDLVYAR 137

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF--------------------NVMPQK 101
            +FD MP RN  +W AMI+G++K G ++++  LF                    N+  ++
Sbjct: 138 KVFDSMPDRNTVTWTAMIDGYLKFGLEDEAFSLFEDYVKHGIRFTNERMFVCLLNLCSRR 197

Query: 102 NDFSWNMLISG-------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
           ++F     + G                   +A+ GEL +A   F+ M  ++ I+W ++I 
Sbjct: 198 SEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVIS 257

Query: 143 CYVRNGFAREAVRLF-KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              R G   +A+ +F   LN   +     + F + +++ AC++  A+ +G+Q+HS ++  
Sbjct: 258 ACSRKGHGNKAIFMFIGMLNHGFLP----NEFTVCSILKACSEEKAIRFGRQVHSLVVKR 313

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
            +  D  +G+SL+++Y                               A CG+++D R+VF
Sbjct: 314 MIKTDVFVGTSLMDMY-------------------------------AKCGEISDCRKVF 342

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D  ++ ++V W S+I+ +       EA+ LF  M+R  ++ +  T+ S+L AC S+G L 
Sbjct: 343 DGMSNRNTVTWTSIIAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALL 402

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK++H    K  +  +V + S                               T++ +Y 
Sbjct: 403 LGKELHAQIIKNSIEKNVYIGS-------------------------------TLVWLYC 431

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG   DA ++ + +P++ ++SW +MI G S  G   EALD    M +  +  + F+ +S
Sbjct: 432 KCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSS 491

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            + ACAN  SL +G  + +        S+  + ++L+  Y KCGF+
Sbjct: 492 ALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFV 537



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 206/478 (43%), Gaps = 106/478 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C+      +G+Q+H + +K G+ N  L + + L+  Y +CG  T AL  FD M  +
Sbjct: 190 LLNLCSRRSEFELGRQVHGNMVKVGVGN--LIVESSLVYFYAQCGELTSALRAFDMMEEK 247

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------------------------- 95
           +  SW A+I    + GH  K++ +F                                   
Sbjct: 248 DVISWTAVISACSRKGHGNKAIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIRFGRQVH 307

Query: 96  ----NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                 M + + F    L+  +AK GE+   R +F+ M  RN + W S+I  + R GF  
Sbjct: 308 SLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGE 367

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+ +       L  +   + +++ AC  + AL  GK++H+ I+ N ++ +  +GS
Sbjct: 368 EAISLFRVMKR---RHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGS 424

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV LY K                               CG+  DA  V  +      V 
Sbjct: 425 TLVWLYCK-------------------------------CGESRDAFNVLQQLPSRDVVS 453

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MISG  S   ++EAL    +M + GV  +  T +S L AC++   L  G+ +H  A 
Sbjct: 454 WTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAK 513

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K   + +V V SAL+  Y+K G  S+A +                               
Sbjct: 514 KNHALSNVFVGSALIHMYAKCGFVSEAFR------------------------------- 542

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +F +MP K+L+SW +MI+G ++NG   EAL L   M      +D +  A+++S C +I
Sbjct: 543 VFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDI 600


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 214/467 (45%), Gaps = 68/467 (14%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           QLH   LK G   + L ++N L+ +YM+C  P                SW+A        
Sbjct: 184 QLHCSVLKSGAA-AVLSVSNALIALYMKCDTPEA--------------SWDAR------- 221

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                  ++ + MP K+D +W  ++ G+ + G++  AR++F ++  +  + WN+MI  YV
Sbjct: 222 -------KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 274

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G   +A  LF+ + S   E++  D F   +V+ ACA+     +GK +H  I+    +F
Sbjct: 275 QSGMCADAFELFRRMVS---EKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNF 331

Query: 206 DS----VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
                  + ++LV LY K G    A ++ + M   D    + ++SGY + G ++ A  VF
Sbjct: 332 VPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVF 391

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                 + + W  M+SGY+      +AL LF++MR   V     T A  ++AC  LG L+
Sbjct: 392 KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALK 451

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
           HG+Q+H H  + G        +ALL  Y+K G  +D                        
Sbjct: 452 HGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVND------------------------ 487

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                  A+ +F  MPN   +SWN+MI  L Q+G   EAL+LF  M    +  D+ S  +
Sbjct: 488 -------ARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLT 540

Query: 442 VISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFI 487
           +++AC +   ++ G   F  +    G+   +     L+D   + G I
Sbjct: 541 ILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 587



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 201/399 (50%), Gaps = 11/399 (2%)

Query: 99  PQKNDFSWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRL 156
           P +       L++  A AG L+ A   F+ +P  RR+ +  N+M+  + R   A  AV +
Sbjct: 88  PTRAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSV 147

Query: 157 FKELNSDLVERLQCDAFI-LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           F  L      R    +F  L + +G   +LAA  +  Q+H  +L +G      + ++L+ 
Sbjct: 148 FHALLGSGSLRPDDYSFTALISAVGQMHNLAA-PHCTQLHCSVLKSGAAAVLSVSNALIA 206

Query: 216 LYGKCGDFNS---ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LY KC    +   A +VL+ M + DD   + ++ GY   G +N AR VF+       V+W
Sbjct: 207 LYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVW 266

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N+MISGY+ +    +A  LF +M    V  D  T  SVLSAC++ GF  HGK VHG   +
Sbjct: 267 NAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIR 326

Query: 333 VG---VIDDVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +    V +  + V +AL+  YSK G    A ++F  + + D +  NT+++ Y   G ++ 
Sbjct: 327 LQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDK 386

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F+ MP K+ +SW  M+ G    G   +AL LF  M   D++   ++ A  I+AC  
Sbjct: 387 AVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGE 446

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + +L+ G Q+ A +   G ++      +L+  Y KCG +
Sbjct: 447 LGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 485



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 180/411 (43%), Gaps = 103/411 (25%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L +C N    +H GK +H   ++     +  + LP+ N L+ +Y + G    A  +FD 
Sbjct: 304 VLSACANAGFFVH-GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           M  ++  SWN ++ G++  G  +K++++F VMP KND SW +++SG+             
Sbjct: 363 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGY------------- 409

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
                             V  G + +A++LF ++ ++ V+   CD +  A  I AC +L 
Sbjct: 410 ------------------VHGGLSEDALKLFNQMRAEDVK--PCD-YTYAGAIAACGELG 448

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL++G+Q+H+H++  G +  +  G++L+ +Y KCG  N                      
Sbjct: 449 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVN---------------------- 486

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
                    DAR VF    +  SV WN+MIS    +    EAL LF +M   G+  D  +
Sbjct: 487 ---------DARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRIS 537

Query: 307 LASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
             ++L+AC+  G ++ G           G+       S   D Y++              
Sbjct: 538 FLTILTACNHAGLVDEGFHYFESMKRDFGI-------SPGEDHYAR-------------- 576

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNG 415
                     +I +    GRI +A+ + +TMP +   S W +++ G   NG
Sbjct: 577 ----------LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 617



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 22/242 (9%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C    ++  G+QLH H ++ G   S     N LL MY +CG   DA L+F
Sbjct: 434 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASN-SAGNALLTMYAKCGAVNDARLVF 492

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
             MP  +  SWNAMI    + GH  ++L+LF+ M  +    +  S+  +++    AG + 
Sbjct: 493 LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 552

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                F  M R   I+     +  +I    R+G   EA  L K +        +    I 
Sbjct: 553 EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMP------FEPTPSIW 606

Query: 176 ATVIGACADLAALEYGKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
             ++  C     +E+G      +  ++   D   +L   L N Y   G +  A +V  +M
Sbjct: 607 EAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYIL---LSNTYSAAGRWVDAARVRKLM 663

Query: 234 KE 235
           ++
Sbjct: 664 RD 665


>gi|302803089|ref|XP_002983298.1| hypothetical protein SELMODRAFT_10719 [Selaginella moellendorffii]
 gi|300148983|gb|EFJ15640.1| hypothetical protein SELMODRAFT_10719 [Selaginella moellendorffii]
          Length = 559

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 137/532 (25%), Positives = 247/532 (46%), Gaps = 90/532 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SCN    +  GK++H H    G+ +ST  + NRL+QMY +C  P +A L+FD +   
Sbjct: 1   LLRSCNDAAHLSQGKRIHAHIHHSGLAHST-HLQNRLIQMYGKCRRPREAQLVFDHIRAP 59

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM--PQKNDFSWNMLISG---------------- 112
           +  SW  +I  F++ G + ++L L+  M     N F +  +I                  
Sbjct: 60  DADSWMNLIAAFVRSGAEREALHLYAAMDVSPPNPFVYPSVIKACSVLRDLAQGREIHRR 119

Query: 113 -------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                              +AK G+L+TA T+F+ +  +  ++W +MI  YVRN     A
Sbjct: 120 IIQHQHCLDAVTSTALVDMYAKCGDLETAATIFSSIQEKTLVSWAAMISGYVRNERYSRA 179

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS--VLGS 211
           + +F  +N   +E L+ D FIL++++ AC+ + AL+ G+ IH+ IL +     +  V+ +
Sbjct: 180 IGIFHRMN---LEGLEPDDFILSSLLLACSKIQALDQGRTIHARILSSSSPAATNLVVET 236

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG---YANCGKMNDARRVF------D 262
           +L+ +Y  CG    A  + + M   D    + +I     Y + G    A RV        
Sbjct: 237 ALMVMYANCGSLIDAKSMFDGMSSKDSIAWATMIEAYFRYGDTGAGIAALRVMILEGVKP 296

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL-EDASTLASVLSACSSLGFLE 321
           +    +   WNS+I    S   + EAL LF +M +   L  DA TL  +L AC+++G L+
Sbjct: 297 QANFRTVECWNSVILALASAGREREALDLFQEMEKTSALVPDAVTLNRILGACAAIGALD 356

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVY 380
            G+ +H                                   S+LK++ D  + N+++ +Y
Sbjct: 357 EGRAIH-----------------------------------SQLKIHPDGPVGNSLVHMY 381

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           + CG + +A+ +F  M  ++++ W +M+V L+ +G   E L+ F  M    +  D  +  
Sbjct: 382 AKCGSLMEARQVFDGMLERNVVGWTAMVVALAHHGFHGECLEKFRLMRHHGIDPDGVAFT 441

Query: 441 SVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++++ C++   +  G   FA +T   G++        +VD   +CG +++ E
Sbjct: 442 NLLNCCSHAGLVSRGWMFFAAMTQDHGMEPTGEQYEVMVDLVARCGRLEVAE 493



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 165/413 (39%), Gaps = 89/413 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNST-LPIANRLLQMYMRCGNPTDALLLFDE 66
           L+ LL +C+   ++  G+ +H   L      +T L +   L+ MY  CG+  DA  +FD 
Sbjct: 198 LSSLLLACSKIQALDQGRTIHARILSSSSPAATNLVVETALMVMYANCGSLIDAKSMFDG 257

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           M  ++  +W  MIE + + G     +    VM          ++ G       +T     
Sbjct: 258 MSSKDSIAWATMIEAYFRYGDTGAGIAALRVM----------ILEGVKPQANFRTVEC-- 305

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
                     WNS+I      G  REA+ LF+E+       L  DA  L  ++GACA + 
Sbjct: 306 ----------WNSVILALASAGREREALDLFQEMEK--TSALVPDAVTLNRILGACAAIG 353

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL+ G+ IHS + ++    D  +G+SLV++Y                             
Sbjct: 354 ALDEGRAIHSQLKIHP---DGPVGNSLVHMY----------------------------- 381

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
             A CG + +AR+VFD   + + V W +M+     +    E L  F  MR +G+  D   
Sbjct: 382 --AKCGSLMEARQVFDGMLERNVVGWTAMVVALAHHGFHGECLEKFRLMRHHGIDPDGVA 439

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             ++L+ CS  G +  G               +  A+   D     GM           +
Sbjct: 440 FTNLLNCCSHAGLVSRGW--------------MFFAAMTQD----HGMEPTG-------E 474

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            Y+      M+ + + CGR+E A+ +   MP +       +++G S+    +E
Sbjct: 475 QYEV-----MVDLVARCGRLEVAEELMEAMPFQPDEEGWLIVLGASKTQGDVE 522


>gi|334185448|ref|NP_001078182.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273297|sp|Q9LHN5.1|PP242_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g18840
 gi|9294693|dbj|BAB03093.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642633|gb|AEE76154.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 235/476 (49%), Gaps = 50/476 (10%)

Query: 28  HLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           H+  +K G   STL    +N+L+ +Y + G   +A  +FDEM  RN +SWNA+I  ++K 
Sbjct: 11  HIRSIKSG---STLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKF 67

Query: 86  GHKEKSLQLFNVMPQKNDF-SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
            + +++ +LF     + D  ++N L+SGFAK                             
Sbjct: 68  NNVKEARELFESDNCERDLITYNTLLSGFAKT---------------------------- 99

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
             +G   EA+ +F E++    + +  D F + T++   A L  + YG+Q+H  ++  G D
Sbjct: 100 --DGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFYGEQLHGVLVKTGND 157

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALISGYANCGKMNDARRVFD 262
                 SSL+++Y KCG F     + N   ++  D    +A+I+ Y   G ++ A  VF 
Sbjct: 158 GTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAYCREGDIDKALSVFW 217

Query: 263 RTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           R  +   ++ WN++I+GY  N  + EAL +   M  NG+  D  +  +VL+  SSL  L+
Sbjct: 218 RNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSLK 277

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMIT 378
            GK+VH    K G   +  V+S ++D Y K G       A  L+    +Y     ++MI 
Sbjct: 278 IGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSA---SSMIV 334

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG---LSQNGSPIEALDLFCNMNKLDLRMD 435
            YSS G++ +AK +F ++  K+L+ W +M +G   L Q  S +E    F   N+ +   D
Sbjct: 335 GYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFI-ANETNTP-D 392

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              + SV+ AC+  + +E G+++       G+  D+ + T+ VD Y KCG ++  E
Sbjct: 393 SLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAE 448



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 220/467 (47%), Gaps = 67/467 (14%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G+QLH   +K G   +   +++ L+ MY +CG        F E+    C  +N   
Sbjct: 140 NVFYGEQLHGVLVKTGNDGTKFAVSS-LIHMYSKCGK-------FKEV----CNIFNGSC 187

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN-AIAWN 138
             F+                  +  + N +I+ + + G++  A ++F   P  N  I+WN
Sbjct: 188 VEFV------------------DSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWN 229

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           ++I  Y +NG+  EA+++   +  +    L+ D      V+   + L +L+ GK++H+ +
Sbjct: 230 TLIAGYAQNGYEEEALKMAVSMEEN---GLKWDEHSFGAVLNVLSSLKSLKIGKEVHARV 286

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
           L NG   +  + S +V++Y KCG+   A     +    + +  S++I GY++ GKM +A+
Sbjct: 287 LKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASSMIVGYSSQGKMVEAK 346

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSL 317
           R+FD  ++ + V+W +M  GY++  +    L L      N     D+  + SVL ACS  
Sbjct: 347 RLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDSLVMVSVLGACSLQ 406

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
            ++E GK++HGH+ + G++ D  + +A +D YSK                          
Sbjct: 407 AYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSK-------------------------- 440

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                CG +E A+ IF +   +  + +N+MI G + +G   ++   F +M +   + D+ 
Sbjct: 441 -----CGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEI 495

Query: 438 SLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCK 483
           +  +++SAC +   +  GE+ F + +    +  +    T ++D Y K
Sbjct: 496 TFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGK 542



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 24/240 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C+    +  GK++H H L+ GIL     +    + MY +CGN   A  +FD  
Sbjct: 396 MVSVLGACSLQAYMEPGKEIHGHSLRTGILMDK-KLVTAFVDMYSKCGNVEYAERIFDSS 454

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             R+   +NAMI G    GH+ KS Q F  M +     ++ ++  L+S     G +    
Sbjct: 455 FERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVLEGE 514

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I+     +  MI  Y +     +A+ L + +  D VE+   DA IL   
Sbjct: 515 KYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGI--DQVEK---DAVILGAF 569

Query: 179 IGACADLAALEYGKQIHSHILV----NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           + AC+     E  K++   +LV    NG  +  +      N Y   G ++   ++ + M+
Sbjct: 570 LNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQI-----ANAYASSGRWDEMQRIRHQMR 624


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 185/357 (51%), Gaps = 32/357 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N  +  ++ +G +  AR LF++ P R+ ++WN++I  YVR+G  REA+ LF  L  D
Sbjct: 157 FVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVED 216

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             + ++ D   +   +  CA +  LE GK++H  +   G+     L ++++++Y KCG  
Sbjct: 217 -GKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSL 275

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A  V   +        + +I G+A  G M DAR +FD   +     WN++++GY+ N 
Sbjct: 276 ELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNK 335

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +  EA+ LFH+M+ + V  +  T+ ++LSACS LG LE G  VH +  +  +   V + +
Sbjct: 336 QGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGT 395

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +L+D Y+K                               CG I+ A  IF+ +P+K+ ++
Sbjct: 396 SLVDMYAK-------------------------------CGNIKKAICIFKEIPDKNALT 424

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           W +MI GL+ +G   EA++ F  M  L L+ D+ +   V+SAC +   ++ G Q F+
Sbjct: 425 WTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFS 481



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 135/254 (53%), Gaps = 2/254 (0%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D F ++A +  ++  G M  ARR+FD +     V WN++I GY+ +    EAL LF ++ 
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 297 RNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
            +G  V  D  T+   +S C+ +G LE GK++H      GV   V + +A++D Y K G 
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A  +F  +     +   TMI  ++  G +EDA+ +F  MP + +  WN+++ G  QN
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               EA+ LF  M +  +  ++ ++ +++SAC+ + +LE+G  V   +    L     + 
Sbjct: 335 KQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALG 394

Query: 475 TSLVDFYCKCGFIK 488
           TSLVD Y KCG IK
Sbjct: 395 TSLVDMYAKCGNIK 408



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 149/343 (43%), Gaps = 67/343 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA+++ ++K G  E +  +F  +  K   SW  +I G A+ G ++ AR LF++MP R+  
Sbjct: 263 NAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVF 322

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            WN+++  YV+N   +EA+ LF E+    V+    +   +  ++ AC+ L ALE G  +H
Sbjct: 323 PWNALMAGYVQNKQGKEAIALFHEMQESKVDP---NEITMVNLLSACSQLGALEMGMWVH 379

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            +I  + L     LG+SLV++Y KCG+   A  +   + + +    +A+I G AN G  +
Sbjct: 380 HYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHAD 439

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A   F R  D                                G+  D  T   VLSAC 
Sbjct: 440 EAIEYFQRMIDL-------------------------------GLQPDEITFIGVLSACC 468

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS-KRGMPSDACKLFSELKVYDTILLN 374
             G ++ G+Q                 S + + Y  +R M   +C               
Sbjct: 469 HAGLVKEGRQFF---------------SLMHEKYHLERKMKHYSC--------------- 498

Query: 375 TMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGS 416
            MI +    G +++A+ +  TMP +   + W ++      +G+
Sbjct: 499 -MIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGN 540



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 130/306 (42%), Gaps = 78/306 (25%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-------------NPT 58
           +  C     + +GK+LH     KG+   T+ + N ++ MY++CG             N T
Sbjct: 231 VSGCAQMGDLELGKRLHEFVDSKGV-RCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKT 289

Query: 59  ------------------DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
                             DA +LFDEMP R+ F WNA++ G+++    ++++ LF+ M +
Sbjct: 290 VVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQE 349

Query: 101 ----KNDFSWNMLISG-----------------------------------FAKAGELKT 121
                N+ +   L+S                                    +AK G +K 
Sbjct: 350 SKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKK 409

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A  +F ++P +NA+ W +MI     +G A EA+  F+ +  DL   LQ D      V+ A
Sbjct: 410 AICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRM-IDL--GLQPDEITFIGVLSA 466

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDD 238
           C     ++ G+Q  S ++      +  +   S +++L G+ G  + A Q++N M  +PD 
Sbjct: 467 CCHAGLVKEGRQFFS-LMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDA 525

Query: 239 FCLSAL 244
               AL
Sbjct: 526 VVWGAL 531



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C+   ++ +G  +H H++ +  L  ++ +   L+ MY +CGN   A+ +F E+
Sbjct: 359 MVNLLSACSQLGALEMGMWVH-HYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEI 417

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P +N  +W AMI G    GH +++++ F  M     Q ++ ++  ++S    AG +K  R
Sbjct: 418 PDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGR 477

Query: 124 TLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M       R    ++ MI    R G   EA +L   +  D       DA +   +
Sbjct: 478 QFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMD------PDAVVWGAL 531

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             AC     +  G++  +  LV     DS +   L N+Y +      A++V  MM+ 
Sbjct: 532 FFACRMHGNITLGEKA-AMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRH 587



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 33/189 (17%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D  T   +L AC+ L +  +G  V GH  K+G   DV V +A +  +S  G    A +LF
Sbjct: 120 DHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLF 179

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            E    D +  NT+I                                G  ++G P EAL+
Sbjct: 180 DESPARDVVSWNTLIG-------------------------------GYVRSGLPREALE 208

Query: 423 LFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           LF  +  +   +R D+ ++   +S CA +  LELG+++   V   G+     +  +++D 
Sbjct: 209 LFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDM 268

Query: 481 YCKCGFIKM 489
           Y KCG +++
Sbjct: 269 YVKCGSLEL 277


>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18520-like [Vitis vinifera]
          Length = 595

 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 237/552 (42%), Gaps = 146/552 (26%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + LA  LQSC T   +   +++H   + K + NS   + N L+  Y R G   +A  +FD
Sbjct: 67  NLLAFWLQSCCTVREV---RRVH-AVVFKCLDNSVTYVNNNLISAYSRFGKLVEARKVFD 122

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-------------------NVMPQKNDF-- 104
           +MP RN  SW A++ G+ + G  +++L+LF                   N+  ++ DF  
Sbjct: 123 KMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVRANGKTFVCVLNLCSKRLDFEL 182

Query: 105 -----------SWNMLISG------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                      +W  LI        +A+ G+L  A   F+ MP R+ + W +MI    + 
Sbjct: 183 GRQIHACIVKDNWRNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQ 242

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ +F ++   +      + F + +V+ AC +  ALE+GKQ+H  I+      D 
Sbjct: 243 GRGTEALSMFSQM---MFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDV 299

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            +G+SLV +Y                               A CG++ D+R+VFD     
Sbjct: 300 FIGTSLVGMY-------------------------------AKCGEILDSRKVFDGMKKR 328

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           ++V W S+I+GY  N +  EA+ LF  M+R  +  +  T+ S+L AC S   L  GK+VH
Sbjct: 329 NTVTWTSIIAGYARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVH 388

Query: 328 GHACKVGV-------------------------------IDDVIVASALLDTYSKRGMPS 356
               K  +                               + DV+  +A++  Y+  G   
Sbjct: 389 AQIMKNSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHEP 448

Query: 357 DACKLFSEL---------------------------------KVYDTILLN------TMI 377
           +A +   E+                                  V  T+ L+       +I
Sbjct: 449 EALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQGKLIHSSVNKTLALSNVFVGSALI 508

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
            +Y+ CG + +A  +F +MP ++L+SW +MIVG ++NG   EAL L   M    + +D +
Sbjct: 509 NMYAKCGYVSEAIQVFDSMPQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAEGIEVDDY 568

Query: 438 SLASVISACANI 449
            L +V+SAC ++
Sbjct: 569 ILTTVLSACGDV 580



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 181/379 (47%), Gaps = 68/379 (17%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N LIS +++ G+L  AR +F+ MP RN ++W ++++ Y R GF  EA+RLF     D +E
Sbjct: 102 NNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLF----DDCIE 157

Query: 167 R-LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             ++ +      V+  C+     E G+QIH+ I+ +                      N 
Sbjct: 158 NGVRANGKTFVCVLNLCSKRLDFELGRQIHACIVKD----------------------NW 195

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
            N +++          SAL+  YA CG ++ A   FD+  +   V W +MI+        
Sbjct: 196 RNLIVD----------SALVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRG 245

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           TEAL +F +M  N    +  T+ SVL AC     LE GKQ+HG   K    +DV + ++L
Sbjct: 246 TEALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSL 305

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y+K                               CG I D++ +F  M  ++ ++W 
Sbjct: 306 VGMYAK-------------------------------CGEILDSRKVFDGMKKRNTVTWT 334

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           S+I G ++NG   EA+ LF  M +  +  +  ++ S++ AC +  +L +G++V A++   
Sbjct: 335 SIIAGYARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKN 394

Query: 466 GLDSDQIISTSLVDFYCKC 484
            + S+  I ++LV FYCKC
Sbjct: 395 SMQSNIYIGSTLVWFYCKC 413



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 115/248 (46%), Gaps = 40/248 (16%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           LIS Y+  GK+ +AR+VFD+  + + V W ++++GY     D EAL LF     NGV  +
Sbjct: 104 LISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVRAN 163

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD----VIVASALLDTYSKRGMPSDAC 359
             T   VL+ CS     E G+Q+H  AC   ++ D    +IV SAL              
Sbjct: 164 GKTFVCVLNLCSKRLDFELGRQIH--AC---IVKDNWRNLIVDSAL-------------- 204

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                            +  Y+ CG +  A H F  MP + ++ W +MI   SQ G   E
Sbjct: 205 -----------------VCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTE 247

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL +F  M       ++F++ SV+ AC    +LE G+Q+   +       D  I TSLV 
Sbjct: 248 ALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVG 307

Query: 480 FYCKCGFI 487
            Y KCG I
Sbjct: 308 MYAKCGEI 315


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 219/469 (46%), Gaps = 67/469 (14%)

Query: 53  RCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           R G   +A  L+ E P   R+    NA+I G++K+G  E++ ++F  M +++  SW+ ++
Sbjct: 217 RAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMV 276

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
            G+ K G++  AR LF  MP RN + W +MI  +++ G       LF  +  +    ++ 
Sbjct: 277 DGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGF--VKV 334

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +   L  +  AC++    + G Q+H  +   G +FD  LG++++ +Y +      A ++ 
Sbjct: 335 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 394

Query: 231 NMMKEPDDFCLSALISGY-------------------------------ANCGKMNDARR 259
           +MM   D    +ALI+GY                               +N GKM  +  
Sbjct: 395 DMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIE 454

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F        + W ++ISG++ N E  EA+  F +M R  V  +  TL+SVLSA + L  
Sbjct: 455 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 514

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G Q+H    K+G+                                +D  + N+++++
Sbjct: 515 LNQGLQIHTLVVKMGM-------------------------------EFDLSIQNSLVSM 543

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+ CG + D   IF ++ + +++S+NSMI G +QNG   EAL+LF  M     + ++ + 
Sbjct: 544 YTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITF 603

Query: 440 ASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
             V+SAC ++  LE G   F  + ++  ++        +VD   + GF+
Sbjct: 604 LGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFL 652



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 210/434 (48%), Gaps = 43/434 (9%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           G  +++  +F+ MP KN  SW  +++ + + G +  AR +F  MP+R   ++N+MI  Y 
Sbjct: 124 GDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYT 183

Query: 146 RNG--FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           R+      EA +LF E+     ER   ++   A +I   A    ++  ++++    V   
Sbjct: 184 RSNPMMIGEASKLFAEMR----ER---NSISYAAMITGLARAGMVDNAEELYLETPVEWR 236

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D   V  ++L++ Y K G    A ++   M E D    S+++ GY   GK+  AR +F+R
Sbjct: 237 D--PVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFER 294

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 322
             + + V W +MI G++          LF +MR+ G ++ + +TL  +  ACS  G  + 
Sbjct: 295 MPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKE 354

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK---------------------- 360
           G Q+HG   ++G   DV + +A++  Y +     +A K                      
Sbjct: 355 GIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQ 414

Query: 361 ---------LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                    LF + +  D I   TMIT +S+ G++  +  +FR MP +  I+W ++I G 
Sbjct: 415 NDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGF 474

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
             NG   EA+  F  M +  +R +  +L+SV+SA A +++L  G Q+   V  +G++ D 
Sbjct: 475 VGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDL 534

Query: 472 IISTSLVDFYCKCG 485
            I  SLV  Y KCG
Sbjct: 535 SIQNSLVSMYTKCG 548



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 50/263 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +     +++ G Q+H   +K G +   L I N L+ MY +CGN  D   +F  +
Sbjct: 502 LSSVLSASAGLATLNQGLQIHTLVVKMG-MEFDLSIQNSLVSMYTKCGNVADGHQIFTSI 560

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
              N  S+N+MI GF + G  E++L+LF+ M     + N+ ++  ++S     G L+   
Sbjct: 561 NSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGW 620

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I      +  ++    R GF  +A+        DL+  + C+       
Sbjct: 621 NYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAI--------DLIRSMPCEP------ 666

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
                           HS +      + ++LG+S ++L        +A Q+  +  EPD+
Sbjct: 667 ----------------HSGV------WGALLGASRIHLRLDVAKL-AAQQIFKL--EPDN 701

Query: 239 FCLSALISG-YANCGKMNDARRV 260
               A++S  Y++ G+  D+ +V
Sbjct: 702 AAPYAVLSFLYSSAGRNRDSEQV 724


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 241/526 (45%), Gaps = 111/526 (21%)

Query: 8   LARLLQSCNTHHS-IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A +L++C+   +   V +Q+H   +  G  +S L + N L+ +Y + G+   A L+F+ 
Sbjct: 114 FASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL-VCNPLIDLYSKNGHVDLAKLVFER 172

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS--------------- 105
           +  ++  SW AMI G  + G +++++ LF       V+P    FS               
Sbjct: 173 LFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG 232

Query: 106 ---------W---------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                    W         N L++ +++ G L  A  +F+ M RR+ I++NS+I    + 
Sbjct: 233 EQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQR 292

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           GF+  A++LF+++  D    ++ D   +A+++ ACA + A   GKQ+HS+++  G+  D 
Sbjct: 293 GFSDRALQLFEKMQLDC---MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           ++  SL++LY KC D  +A++                                F  T   
Sbjct: 350 IIEGSLLDLYVKCFDIETAHEY-------------------------------FLTTETE 378

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           + V+WN M+  Y      +E+  +F +M+  G++ +  T  S+L  C+SLG L+ G+Q+H
Sbjct: 379 NVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH 438

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
               K G   +V V S L+D Y+K G                                ++
Sbjct: 439 TQVIKSGFQFNVYVCSVLIDMYAKHG-------------------------------ELD 467

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ I + +  + ++SW +MI G +Q+    EAL LF  M    +R D    +S ISACA
Sbjct: 468 TARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACA 527

Query: 448 NISSLELGEQVFARVTIIGLDSD-----QIISTSLVDFYCKCGFIK 488
            I +L  G+Q+ A+  I G   D      + S  L+  Y KCG I+
Sbjct: 528 GIQALNQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIE 573



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 229/515 (44%), Gaps = 115/515 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C       +G+QLH   +K G+ + T  + N L+ +Y R GN   A  +F +M
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETF-VCNALVTLYSRWGNLIAAEQIFSKM 274

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ--------------------- 100
            RR+  S+N++I G  + G  +++LQLF  M      P                      
Sbjct: 275 HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGK 334

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K   S +++I G     + K  +++TA   F      N + WN M+  Y + G
Sbjct: 335 QLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLG 394

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              E+  +F ++    +E L  + +   +++  C  L AL+ G+QIH+ ++ +G  F+  
Sbjct: 395 NLSESYWIFLQMQ---IEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S L+++Y K G+ ++A  +L  ++E D    +A+I+GY                    
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQ------------------ 493

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                        ++   EAL LF +M   G+  D    +S +SAC+ +  L  G+Q+H 
Sbjct: 494 -------------HDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHA 540

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            +   G  +D+ + +AL                            N +IT+YS CG IED
Sbjct: 541 QSYISGYSEDLSIGNALAS--------------------------NVLITLYSKCGSIED 574

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-------------RMD 435
           AK  F  MP K+++SWN+MI G SQ+G   EA+ LF  M +L L               D
Sbjct: 575 AKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGEMPIEPD 634

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
                +++SAC    ++E+GE  FA   ++ L+ +
Sbjct: 635 AMIWRTLLSACTVHKNIEIGE--FAARHLLELEPE 667



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 223/515 (43%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L + C    S+   K+LH    K G     + + +RL+ +Y+  G   +A+ LFD++P  
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDV-LGSRLIDIYLAHGEVDNAIKLFDDIPSS 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW------------------ 106
           N   WN +I G +      + L LF      NV P ++ F+                   
Sbjct: 75  NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQI 134

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N LI  ++K G +  A+ +F  +  +++++W +MI    +NG  
Sbjct: 135 HAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGRE 194

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LF +++   V       ++ ++V+ AC  +   + G+Q+H  I+  GL  ++   
Sbjct: 195 DEAILLFCQMHKSAV---IPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSET--- 248

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                                       F  +AL++ Y+  G +  A ++F +      +
Sbjct: 249 ----------------------------FVCNALVTLYSRWGNLIAAEQIFSKMHRRDRI 280

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            +NS+ISG         AL LF KM+ + +  D  T+AS+LSAC+S+G    GKQ+H + 
Sbjct: 281 SYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYV 340

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G+  D+I+  +LLD Y K                               C  IE A 
Sbjct: 341 IKMGMSSDLIIEGSLLDLYVK-------------------------------CFDIETAH 369

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
             F T   ++++ WN M+V   Q G+  E+  +F  M    L  ++++  S++  C ++ 
Sbjct: 370 EYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +L+LGEQ+  +V   G   +  + + L+D Y K G
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHG 464



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 183/388 (47%), Gaps = 67/388 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  +   GE+  A  LF+D+P  N   WN +I   +    A + + LF  +   + E +
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLM---ITENV 107

Query: 169 QCDAFILATVIGACAD-LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
             D    A+V+ AC+   A  +  +QIH+ I+ +G     ++ + L++LY K G      
Sbjct: 108 TPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNG------ 161

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                     ++ A+ VF+R     SV W +MISG   N  + E
Sbjct: 162 -------------------------HVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDE 196

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+LLF +M ++ V+      +SVLSAC+ +   + G+Q+HG   K G+  +         
Sbjct: 197 AILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSE--------- 247

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
                                 T + N ++T+YS  G +  A+ IF  M  +  IS+NS+
Sbjct: 248 ----------------------TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSL 285

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I GL+Q G    AL LF  M    ++ D  ++AS++SACA++ +   G+Q+ + V  +G+
Sbjct: 286 ISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGM 345

Query: 468 DSDQIISTSLVDFYCKCGFIKM-DEYYL 494
            SD II  SL+D Y KC  I+   EY+L
Sbjct: 346 SSDLIIEGSLLDLYVKCFDIETAHEYFL 373



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 56/279 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C +  ++ +G+Q+H   +K G     + + + L+ MY + G    A  +   +   
Sbjct: 421 ILRTCTSLGALDLGEQIHTQVIKSG-FQFNVYVCSVLIDMYAKHGELDTARGILQRLREE 479

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           +  SW AMI G+ +     ++L+LF  M  +                             
Sbjct: 480 DVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIH 539

Query: 102 ---------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                          N  + N+LI+ ++K G ++ A+  F +MP +N ++WN+MI  Y +
Sbjct: 540 AQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQ 599

Query: 147 NGFAREAVRLFKELNS--------DLVERL--QCDAFILATVIGACADLAALEYGKQIHS 196
           +G+  EAV LF+E+            V  +  + DA I  T++ AC     +E G+    
Sbjct: 600 HGYGSEAVSLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAAR 659

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           H+L    + DS     L N+Y   G ++  ++   MMK+
Sbjct: 660 HLLELEPE-DSATYVLLSNMYAVSGKWDYRDRTRQMMKD 697



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 32/196 (16%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M   G+  +  T   +   C + G L   K++H    K G   + ++ S L+D       
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLID------- 53

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                   +Y + G +++A  +F  +P+ ++  WN +I GL   
Sbjct: 54  ------------------------IYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAK 89

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACAN-ISSLELGEQVFARVTIIGLDSDQII 473
               + L LF  M   ++  D+ + ASV+ AC+   +  ++ EQ+ A++   G  S  ++
Sbjct: 90  KLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLV 149

Query: 474 STSLVDFYCKCGFIKM 489
              L+D Y K G + +
Sbjct: 150 CNPLIDLYSKNGHVDL 165


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/518 (27%), Positives = 239/518 (46%), Gaps = 106/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L  C     +  G QLH   +K G L   + +AN LL MY +C    DA  LF+ +
Sbjct: 245 LACFLSVCAAEADLLSGVQLHSLAVKCG-LEQEVAVANTLLSMYAKCRCLDDAWRLFELL 303

Query: 68  PRRNCFSWNAMIEG----------------FMKLGHKEKSLQLFNVMPQKND-------- 103
           PR +  +WN MI G                 ++ G +  S+ L +++P   D        
Sbjct: 304 PRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGK 363

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          F  + L+  + K  +++TAR L++     + +  +++I  YV NG
Sbjct: 364 EVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNG 423

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +A+++F+ L   L + ++ +A  +A+V+ ACA ++AL  G++IH ++L N  +    
Sbjct: 424 MSEKALQMFRYL---LEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYE---- 476

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                    GKC                  +  SAL+  YA CG+++ +  +F + +   
Sbjct: 477 ---------GKC------------------YVESALMDMYAKCGRLDLSHYIFSKMSLKD 509

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSMIS +  N E  EAL LF +M   G+  +  T++S LSAC+SL  + +GK++HG
Sbjct: 510 EVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHG 569

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K  +  D+   SAL+D Y+K                               CG +E 
Sbjct: 570 VIIKGPIKADIFAESALIDMYAK-------------------------------CGNMEL 598

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F  MP+K+ +SWNS+I     +G   E++     M +   + D  +  ++ISACA+
Sbjct: 599 ALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAH 658

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG 485
              +E G Q+F  +T   L + ++   + +VD Y + G
Sbjct: 659 AGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSG 696



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 237/521 (45%), Gaps = 105/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +++SC    ++ +G+ +H      G L S + + + L++MY   G   DA   FD M
Sbjct: 144 LPYVVKSCAALGAVSLGRLVHRTARATG-LASDVYVGSALIKMYSDAGLLRDARDAFDGM 202

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------P---------------------- 99
           P R+C  WN M++G++K G    +++LF  M      P                      
Sbjct: 203 PWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGV 262

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      ++     N L+S +AK   L  A  LF  +PR + + WN MI   V+NG
Sbjct: 263 QLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNG 322

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF ++   L    + D+  L +++ A  DL  L+ GK++H +I+ N +  D+ 
Sbjct: 323 LLDEALGLFCDM---LRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAF 379

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L S+LV++Y KC D  +A                               R ++D      
Sbjct: 380 LVSALVDIYFKCRDVRTA-------------------------------RNLYDAARAID 408

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+ +++ISGY+ N    +AL +F  +    +  +A T+ASVL AC+S+  L  G+++HG
Sbjct: 409 VVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHG 468

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +  +        V SAL+D Y+K G    +  +FS++ + D +  N+MI+ +S  G    
Sbjct: 469 YVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGE--- 525

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                       P EALDLF  M    ++ +  +++S +SACA+
Sbjct: 526 ----------------------------PQEALDLFRQMCMEGIKYNNVTISSALSACAS 557

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           + ++  G+++   +    + +D    ++L+D Y KCG +++
Sbjct: 558 LPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMEL 598



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/533 (26%), Positives = 228/533 (42%), Gaps = 111/533 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLL 63
           D L  LL+ C +   + +G Q+H   +  G L  ++ L +  RLL MY+      DA+ +
Sbjct: 33  DRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAV 92

Query: 64  FDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVM--------PQKNDFSW------ 106
           F  +PR    +   WN +I GF   GH   ++  +  M        P  +   +      
Sbjct: 93  FSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCA 152

Query: 107 ---------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                                      + LI  ++ AG L+ AR  F+ MP R+ + WN 
Sbjct: 153 ALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNV 212

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           M+  Y++ G    AVRLF+ +    V   + +   LA  +  CA  A L  G Q+HS  +
Sbjct: 213 MMDGYIKAGDVGGAVRLFRNMR---VSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAV 269

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             GL+ +  + ++L+++Y KC                              C  ++DA R
Sbjct: 270 KCGLEQEVAVANTLLSMYAKC-----------------------------RC--LDDAWR 298

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F+       V WN MISG + N    EAL LF  M R+G   D+ TL S+L A + L  
Sbjct: 299 LFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNG 358

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ GK+VHG+  +  V  D  + SAL+D Y K      A  L+   +  D ++ +T+I+ 
Sbjct: 359 LKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISG 418

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y   G  E A  +FR +              L Q   P                 +  ++
Sbjct: 419 YVLNGMSEKALQMFRYL--------------LEQCIKP-----------------NAVTV 447

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           ASV+ ACA+IS+L LG+++   V     +    + ++L+D Y KCG + +  Y
Sbjct: 448 ASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHY 500



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 184/446 (41%), Gaps = 90/446 (20%)

Query: 66  EMPRRNCFSWN-----------------AMIEGFMKLGHKEKSLQLF------NVMPQKN 102
           +MPRR C S                   A++ G +   H    LQ+         +   N
Sbjct: 9   KMPRRPCCSTTFSATEVVTDVSSADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHN 68

Query: 103 DFSWNMLISG-FAKAGELKTARTLFNDMPRRNA---IAWNSMIHCYVRNGFAREAVRLFK 158
             + +  + G +  A   + A  +F+ +PR  A   + WN +I  +   G    AV  + 
Sbjct: 69  HLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYV 128

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
           ++ +        DA  L  V+ +CA L A+  G+ +H      GL  D  +GS+L+ +Y 
Sbjct: 129 KMWTHPAAP-SPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMY- 186

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                                         ++ G + DAR  FD       V+WN M+ G
Sbjct: 187 ------------------------------SDAGLLRDARDAFDGMPWRDCVLWNVMMDG 216

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           YI   +   A+ LF  MR +G   + +TLA  LS C++   L  G Q+H  A K G+  +
Sbjct: 217 YIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQE 276

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           V VA+ LL  Y+K     DA +LF  L                               P 
Sbjct: 277 VAVANTLLSMYAKCRCLDDAWRLFELL-------------------------------PR 305

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
             L++WN MI G  QNG   EAL LFC+M +   R D  +L S++ A  +++ L+ G++V
Sbjct: 306 DDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEV 365

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKC 484
              +    +  D  + ++LVD Y KC
Sbjct: 366 HGYIIRNCVHMDAFLVSALVDIYFKC 391


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 210/459 (45%), Gaps = 103/459 (22%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q + F  N+LI+  +K+  +  AR +F+ MP +N I W+SM+  Y + G++ EA+ +F +
Sbjct: 81  QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 140

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG- 218
           L     E    + F+LA+VI AC  L  +E G Q+H  ++ +G D D  +G+SL++ Y  
Sbjct: 141 LQRKSGE--HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSK 198

Query: 219 ------------------------------KCGDFNSANQVLNMMKE----PDDFCLSAL 244
                                         KCG    + ++   M+E    PD + +S++
Sbjct: 199 NGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSV 258

Query: 245 ISG-----------------------------------YANCGKMNDARRVFDRTTDTSS 269
           +S                                    Y  C ++   R++FD+    + 
Sbjct: 259 LSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNI 318

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W +MISGY+ N+ D EA+ LF +M R G   D     SVL++C S   LE G+QVH +
Sbjct: 319 ISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAY 378

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K  +  D  V + L+D Y+K  +  DA K+F  +   + I  N MI  YSS  ++   
Sbjct: 379 TIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLS-- 436

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                                        EAL+LF  M     + ++F+ A++I+A +N+
Sbjct: 437 -----------------------------EALELFHEMRVRLQKPNEFTFAALITAASNL 467

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +SL  G+Q   ++  +GLD    ++ +LVD Y KCG I+
Sbjct: 468 ASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIE 506



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 242/530 (45%), Gaps = 85/530 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C     +  G QLH   ++ G  +  + +   L+  Y + GN  +A L+FD++
Sbjct: 154 LASVIRACTQLGVVEKGAQLHGFVVRSG-FDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 212

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS---------------- 105
             +   +W  +I G+ K G    SL+LF      NV+P +   S                
Sbjct: 213 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N+LI  + K   +K  R LF+ M  +N I+W +MI  Y++N 
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 332

Query: 149 FAREAVRLFKELNSDLVERL--QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           F  EA++LF E+N     RL  + D F   +V+ +C    ALE G+Q+H++ +   L   
Sbjct: 333 FDWEAMKLFGEMN-----RLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANL--- 384

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                       E D+F  + LI  YA    + DA++VFD   +
Sbjct: 385 ----------------------------ESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 416

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + + +N+MI GY S  + +EAL LFH+MR      +  T A++++A S+L  L HG+Q 
Sbjct: 417 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQF 476

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    K+G+     V +AL+D Y+K G   +A K+F+     D +  N+MI+ ++  G  
Sbjct: 477 HNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEA 536

Query: 387 EDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           E+A  +FR M  + +    +++ +++   S  G   + L+ F +M    ++      A V
Sbjct: 537 EEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACV 596

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +S       L   ++   ++ I   +   I+  SL+      G +++ +Y
Sbjct: 597 VSLLGRSGKLFEAKEFIEKMPI---EPAAIVWRSLLSACRIAGNVELGKY 643


>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 182/352 (51%), Gaps = 39/352 (11%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           + K G LK AR +F+++P+R   A+N +I  Y++ G  ++++ L + L   ++E  + D 
Sbjct: 87  YLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRL---VLEGQRPDG 143

Query: 173 FILATVIGAC--ADLAALE--YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           F  + ++ A    D   L    G  +H  IL + ++ D VL ++LV+ Y K G    A +
Sbjct: 144 FTYSMILKASTSGDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARK 203

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE- 287
           V +MM E +  C +++ISGY N G + DA  +F+RT +   V++N+MI GY  + +  E 
Sbjct: 204 VFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEK 263

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           AL ++ +M+R G   + ST ASV+ ACS L   E G+QV G   K     +V   SAL+D
Sbjct: 264 ALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALID 323

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            YSK                               CGRIEDA+  F  MP K++ SW+SM
Sbjct: 324 MYSK-------------------------------CGRIEDARRAFEQMPEKNVFSWSSM 352

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           I G  +NG P EAL LF  M    +  +  +    +SAC +   +  G ++F
Sbjct: 353 IDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIF 404



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 156/383 (40%), Gaps = 105/383 (27%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           N++   H G+++H H +K G + +T  ++ +LL +Y++CG    A  +FDE+P+R   ++
Sbjct: 54  NSNTPFH-GQKIHAHIVKTGFIPNT-NVSIKLLILYLKCGCLKYARQMFDELPQRTLSAY 111

Query: 76  NAMIEGFMKLGHKEKSL------------------------------------------- 92
           N +I G++KLG  + S+                                           
Sbjct: 112 NYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDNVTLSCNLGSVVHG 171

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           Q+     + +D  +  L+  + K+G +  AR +F+ M  +N I   SMI  Y+  G   +
Sbjct: 172 QILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVED 231

Query: 153 AVRLF-KELNSDLV-----------------------ERLQCDAF-----ILATVIGACA 183
           A  +F + +  D+V                         +Q   F       A+VIGAC+
Sbjct: 232 AEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGACS 291

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            LA  E G+Q+   +L      +   GS+L+++Y KCG    A +    M E + F  S+
Sbjct: 292 VLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSS 351

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I GY   G+ +                               EAL LFHKM+   +  +
Sbjct: 352 MIDGYGKNGRPD-------------------------------EALQLFHKMQDCCIEPN 380

Query: 304 ASTLASVLSACSSLGFLEHGKQV 326
             T    LSAC   G +  G+++
Sbjct: 381 YVTFLGALSACGHAGLVSKGREI 403



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 145/304 (47%), Gaps = 36/304 (11%)

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
           +G++IH+HI+  G   ++ +   L+ LY KCG                  CL        
Sbjct: 60  HGQKIHAHIVKTGFIPNTNVSIKLLILYLKCG------------------CLKY------ 95

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
                  AR++FD     +   +N +I GY+      +++ L  ++   G   D  T + 
Sbjct: 96  -------ARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSM 148

Query: 310 VLSACSSLGFL----EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           +L A +S   +      G  VHG   K  V  D ++ +AL+D+Y K G    A K+F  +
Sbjct: 149 ILKASTSGDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMM 208

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-ALDLF 424
              + I   +MI+ Y + G +EDA+ IF     K ++ +N+MI G S++    E AL+++
Sbjct: 209 MEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVY 268

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M +   R +  + ASVI AC+ ++  E+G+QV  ++      ++    ++L+D Y KC
Sbjct: 269 VEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKC 328

Query: 485 GFIK 488
           G I+
Sbjct: 329 GRIE 332


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 219/469 (46%), Gaps = 67/469 (14%)

Query: 53  RCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           R G   +A  L+ E P   R+    NA+I G++K+G  E++ ++F  M +++  SW+ ++
Sbjct: 138 RAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMV 197

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
            G+ K G++  AR LF  MP RN + W +MI  +++ G       LF  +  +    ++ 
Sbjct: 198 DGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGF--VKV 255

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +   L  +  AC++    + G Q+H  +   G +FD  LG++++ +Y +      A ++ 
Sbjct: 256 NPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIF 315

Query: 231 NMMKEPDDFCLSALISGY-------------------------------ANCGKMNDARR 259
           +MM   D    +ALI+GY                               +N GKM  +  
Sbjct: 316 DMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIE 375

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F        + W ++ISG++ N E  EA+  F +M R  V  +  TL+SVLSA + L  
Sbjct: 376 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 435

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G Q+H    K+G+                                +D  + N+++++
Sbjct: 436 LNQGLQIHTLVVKMGM-------------------------------EFDLSIQNSLVSM 464

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y+ CG + D   IF ++ + +++S+NSMI G +QNG   EAL+LF  M     + ++ + 
Sbjct: 465 YTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITF 524

Query: 440 ASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
             V+SAC ++  LE G   F  + ++  ++        +VD   + GF+
Sbjct: 525 LGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFL 573



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 210/434 (48%), Gaps = 43/434 (9%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           G  +++  +F+ MP KN  SW  +++ + + G +  AR +F  MP+R   ++N+MI  Y 
Sbjct: 45  GDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYT 104

Query: 146 RNG--FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           R+      EA +LF E+     ER   ++   A +I   A    ++  ++++    V   
Sbjct: 105 RSNPMMIGEASKLFAEMR----ER---NSISYAAMITGLARAGMVDNAEELYLETPVEWR 157

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D   V  ++L++ Y K G    A ++   M E D    S+++ GY   GK+  AR +F+R
Sbjct: 158 D--PVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFER 215

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 322
             + + V W +MI G++          LF +MR+ G ++ + +TL  +  ACS  G  + 
Sbjct: 216 MPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKE 275

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK---------------------- 360
           G Q+HG   ++G   DV + +A++  Y +     +A K                      
Sbjct: 276 GIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQ 335

Query: 361 ---------LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                    LF + +  D I   TMIT +S+ G++  +  +FR MP +  I+W ++I G 
Sbjct: 336 NDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGF 395

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
             NG   EA+  F  M +  +R +  +L+SV+SA A +++L  G Q+   V  +G++ D 
Sbjct: 396 VGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDL 455

Query: 472 IISTSLVDFYCKCG 485
            I  SLV  Y KCG
Sbjct: 456 SIQNSLVSMYTKCG 469



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 50/263 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +     +++ G Q+H   +K G +   L I N L+ MY +CGN  D   +F  +
Sbjct: 423 LSSVLSASAGLATLNQGLQIHTLVVKMG-MEFDLSIQNSLVSMYTKCGNVADGHQIFTSI 481

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
              N  S+N+MI GF + G  E++L+LF+ M     + N+ ++  ++S     G L+   
Sbjct: 482 NSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGW 541

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I      +  ++    R GF  +A+        DL+  + C+       
Sbjct: 542 NYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAI--------DLIRSMPCEP------ 587

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
                           HS +      + ++LG+S ++L        +A Q+  +  EPD+
Sbjct: 588 ----------------HSGV------WGALLGASRIHLRLDVAKL-AAQQIFKL--EPDN 622

Query: 239 FCLSALISG-YANCGKMNDARRV 260
               A++S  Y++ G+  D+ +V
Sbjct: 623 AAPYAVLSFLYSSAGRNRDSEQV 645


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 229/518 (44%), Gaps = 106/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A + +SC    ++ +G QLH H LK     + + I    L MYM+C N +DA  LF+ +
Sbjct: 278 FASVFRSCAGLSALRLGSQLHGHALKTD-FGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
           P  N  S+NA+I G+ +     ++L +F ++                             
Sbjct: 337 PNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGL 396

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      Q N    N ++  + K G L  A  +F +M  R+A++WN++I  + +NG
Sbjct: 397 QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG 456

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              + + LF  +   L   ++ D F   +V+ ACA   AL  G +IH+ I+ + L  DS 
Sbjct: 457 NEEKTLSLFVWM---LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSF 513

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G +L+++Y K                               CG M  A ++ DR  + +
Sbjct: 514 VGIALIDMYSK-------------------------------CGMMEKAEKLHDRLAEQT 542

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN++ISG+    +  EA   F KM   GV  D  T A++L  C++L  +E GKQ+H 
Sbjct: 543 VVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHA 602

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K  +  D  ++S L+D YSK                               CG ++D
Sbjct: 603 QIIKKELQSDAYISSTLVDMYSK-------------------------------CGNMQD 631

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            + IF   PN+  ++WN+M+ G +Q+G   EAL +F  M   +++ +  +  +V+ AC +
Sbjct: 632 FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGH 691

Query: 449 ISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  +E G   F + ++  GLD      + +VD   + G
Sbjct: 692 MGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSG 729



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 218/485 (44%), Gaps = 101/485 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T+    + + Q C+   ++  GKQ H   +       T+ + N L+QMY++C +      
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTE-FKPTVFVTNCLIQMYIKCSD------ 92

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
                                     E + ++F+ MPQ++  SWN ++ G+A  G++  A
Sbjct: 93  -------------------------LEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVA 127

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILATVIG 180
           + LF+ MP R+ ++WNS+I  Y+ NG  R+ + +F ++      R+    D    A V+ 
Sbjct: 128 QKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG-----RMGTVFDRTTFAVVLK 182

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           +C+ L     G QIH   +  G D D V GS+L+++Y KC   + + Q  + M E +   
Sbjct: 183 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKN--- 239

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                                        V W+++I+G + N++    L LF +M++ GV
Sbjct: 240 ----------------------------WVSWSAIIAGCVQNDDLRGGLELFKEMQKAGV 271

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
               ST ASV  +C+ L  L  G Q+HGHA K     DV++ +A LD Y K    SDA K
Sbjct: 272 GVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQK 331

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF+ L                               PN +L S+N++IVG +++   IEA
Sbjct: 332 LFNSL-------------------------------PNHNLQSYNAIIVGYARSDKGIEA 360

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L +F  + K  L +D+ SL+    ACA I     G QV          S+  ++ +++D 
Sbjct: 361 LGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDM 420

Query: 481 YCKCG 485
           Y KCG
Sbjct: 421 YGKCG 425



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 136/517 (26%), Positives = 221/517 (42%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L+SC++      G Q+H   +K G  +  +   + LL MY +C     ++  F  M
Sbjct: 177 FAVVLKSCSSLEDHGGGIQIHGLAVKMG-FDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N  SW+A+I G ++       L+LF  M +                           
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K DF  +++I       + K   L  A+ LFN +P  N  ++N++I  Y R+ 
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ +F+ L       L  D   L+    ACA +     G Q+H      GL   S+
Sbjct: 356 KGIEALGMFRLLQKS---GLGLDEVSLSGAFRACAVIKGDLEGLQVH------GLSMKSL 406

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             S++            AN +L+M               Y  CG + +A  VF+      
Sbjct: 407 CQSNIC----------VANAILDM---------------YGKCGALVEACLVFEEMVSRD 441

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN++I+ +  N  + + L LF  M ++G+  D  T  SVL AC+    L  G ++H 
Sbjct: 442 AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHN 501

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K  +  D  V  AL+D YSK                               CG +E 
Sbjct: 502 RIIKSRLGLDSFVGIALIDMYSK-------------------------------CGMMEK 530

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +   +  ++++SWN++I G S      EA   F  M ++ +  D F+ A+++  CAN
Sbjct: 531 AEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCAN 590

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + ++ELG+Q+ A++    L SD  IS++LVD Y KCG
Sbjct: 591 LVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 627



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 181/406 (44%), Gaps = 76/406 (18%)

Query: 27  LHLHFLK-KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           L +H L  K +  S + +AN +L MY +CG   +A L+F+EM  R+  SWNA+I    + 
Sbjct: 396 LQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQN 455

Query: 86  GHKEKSLQLFNVMPQ----KNDFSWN---------------------------------- 107
           G++EK+L LF  M Q     ++F++                                   
Sbjct: 456 GNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVG 515

Query: 108 -MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             LI  ++K G ++ A  L + +  +  ++WN++I  +     + EA + F ++   L  
Sbjct: 516 IALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM---LEM 572

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +  D F  AT++  CA+L  +E GKQIH+ I+   L  D+ + S+LV++Y         
Sbjct: 573 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMY--------- 623

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                 + CG M D + +F++  +   V WN+M+ GY  +    
Sbjct: 624 ----------------------SKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGE 661

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASAL 345
           EAL +F  M+   V  + +T  +VL AC  +G +E G    H      G+   +   S +
Sbjct: 662 EALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCV 721

Query: 346 LDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAK 390
           +D   + G  S A +L   +    D ++  T++++    G +E A+
Sbjct: 722 VDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAE 767



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 17/235 (7%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L +C    ++ +GKQ+H   +KK  L S   I++ L+ MY +CGN  D  L+F++ P
Sbjct: 582 ATILDTCANLVTVELGKQIHAQIIKKE-LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 640

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTART 124
            R+  +WNAM+ G+ + G  E++L++F  M     + N  ++  ++      G ++    
Sbjct: 641 NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLH 700

Query: 125 LFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            F+ M     +      ++ ++    R+G   +A+ L + +        + DA I  T++
Sbjct: 701 YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGM------PFEADAVIWRTLL 754

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             C     +E  ++    IL    + DS     L N+Y   G +N   ++  MM+
Sbjct: 755 SICKIHGNVEVAEKAAYSILQLEPE-DSAAYVLLSNIYANAGMWNEVTKLRKMMR 808


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 222/460 (48%), Gaps = 88/460 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRR-----NCFSWNAMIEGF-----MKLGHKEKSLQL 94
           N +L+ ++    P  AL  + EM  R     + F++ ++++G       K+G K    Q+
Sbjct: 47  NSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVG-KVLHGQV 105

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
              M   + +    L++ +A  G+LK+AR LF  M  RN + W SMI  Y++N    EA+
Sbjct: 106 VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEAL 165

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            L+K++  D       D   +AT++ ACA+L  L  G ++HSHI    +   +VLGS+LV
Sbjct: 166 LLYKKMEED---GFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALV 222

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           N+                               YA CG +  AR+VFD+ +D     W++
Sbjct: 223 NM-------------------------------YAKCGDLKTARQVFDKLSDKDVYAWSA 251

Query: 275 MISGYISNNEDTEALLLFHK------MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +I GY+ NN  TEAL LF +      MR N V     T+ +V+SAC+ LG LE G+ VH 
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEV-----TILAVISACAQLGDLETGRWVHD 306

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +                  T +++G              +   L N++I ++S CG I+ 
Sbjct: 307 YI-----------------TRTQKG--------------HSVSLNNSLIDMFSKCGDIDA 335

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK IF +M  K LISWNSM+ G + +G   EAL  F  M   DL+ D+ +   V++AC++
Sbjct: 336 AKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSH 395

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
              ++ G+++F  +  + G+         +VD  C+ G +
Sbjct: 396 AGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLL 435



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 159/355 (44%), Gaps = 73/355 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C       VGK LH   +K  +L+S L I   LL MY  CG+   A  LF+ M  R
Sbjct: 85  LLKGCALLLEFKVGKVLHGQVVKY-MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHR 143

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------NDFSWNM--- 108
           N   W +MI G+MK     ++L L+  M +                     D    M   
Sbjct: 144 NKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLH 203

Query: 109 -----------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L++ +AK G+LKTAR +F+ +  ++  AW+++I  YV+N  + 
Sbjct: 204 SHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRST 263

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA++LF+E+       ++ +   +  VI ACA L  LE G+ +H +I          L +
Sbjct: 264 EALQLFREVAGG--SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNN 321

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL++++ KCGD ++A ++ + M   D      LIS                         
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKD------LIS------------------------- 350

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           WNSM++G+  +    EAL  F  M+   +  D  T   VL+ACS  G ++ GK++
Sbjct: 351 WNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKL 405



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 114/233 (48%), Gaps = 32/233 (13%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACS 315
           A  VF  T +   + WNSM+  ++++N    AL  + +M  R+  + D  T  S+L  C+
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L   + GK +HG   K  +  D+ + + LL+                            
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLN---------------------------- 122

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
              +Y++CG ++ A+ +F  M +++ + W SMI G  +N  P EAL L+  M +     D
Sbjct: 123 ---MYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + ++A+++SACA +  L +G ++ + +  + +    ++ ++LV+ Y KCG +K
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 373 LNTMITVYSSCGR--IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           LN +I    S G   +  A  +F       +++WNSM+     +  P  AL  +  M + 
Sbjct: 13  LNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLER 72

Query: 431 DLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              + D+F+  S++  CA +   ++G+ +  +V    L SD  I T+L++ Y  CG +K
Sbjct: 73  SRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 225/461 (48%), Gaps = 76/461 (16%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDA 60
           D+R+  L  ++++C    ++  GKQ+H   L  G+ L+S   + + LL MY++       
Sbjct: 73  DSRV--LPTVIKTCAALSALQTGKQMHCFALVSGLGLDSV--VLSSLLHMYVQ------- 121

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
              FD                     H + +  +F+ +PQ    + + LIS FA+ G +K
Sbjct: 122 ---FD---------------------HLKDARNVFDKLPQPGVVTSSALISRFARKGRVK 157

Query: 121 TARTLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             + LF          N ++WN MI  + R+G   +AV +F+ ++   +E L+ D   ++
Sbjct: 158 ETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMH---LEGLKPDGTSVS 214

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           +V+ A  DL     G QIH +++  GL  D  + S+L+++YGKC   +  + V N M E 
Sbjct: 215 SVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEV 274

Query: 237 DDFCLSALISGYANCGKMNDARRVFD--RTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           D    +AL++G +  G +++A  VF   +  D + V W SMI+    N +D EAL LF +
Sbjct: 275 DVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFRE 334

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+  GV  ++ T+  +L AC ++  L HGK  H  + + G+ +DV V SAL+D Y+K   
Sbjct: 335 MQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAK--- 391

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                       CGR+  ++  F  MPN++L+SWNS++ G + +
Sbjct: 392 ----------------------------CGRMLASRLCFDMMPNRNLVSWNSLMAGYAMH 423

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           G   EA+++F  M +   + D  S   V+SAC      E G
Sbjct: 424 GKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEG 464



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 188/360 (52%), Gaps = 9/360 (2%)

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +  I+    I  + +       +R+F  +   L + +  D+ +L TVI  CA L+AL+ G
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYM---LTQGIVPDSRVLPTVIKTCAALSALQTG 93

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           KQ+H   LV+GL  DSV+ SSL+++Y +      A  V + + +P     SALIS +A  
Sbjct: 94  KQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARK 153

Query: 252 GKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           G++ + + +F +T D       V WN MISG+  +    +A+L+F  M   G+  D +++
Sbjct: 154 GRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSV 213

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +SVL A   L     G Q+H +  K G+  D  V SAL+D Y K    S+   +F+E+  
Sbjct: 214 SSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDE 273

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--ISWNSMIVGLSQNGSPIEALDLFC 425
            D    N ++T  S  G +++A  +F+      L  +SW SMI   SQNG  +EAL+LF 
Sbjct: 274 VDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFR 333

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M    ++ +  ++  ++ AC NI++L  G+         G+ +D  + ++L+D Y KCG
Sbjct: 334 EMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCG 393



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++  GK  H   L+ GI N    + + L+ MY +CG    + L FD MP R
Sbjct: 350 LLPACGNIAALLHGKAAHCFSLRNGIFNDVY-VGSALIDMYAKCGRMLASRLCFDMMPNR 408

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKND-FSWNMLISGFAKAGELKTARTLF 126
           N  SWN+++ G+   G   +++ +F +M    QK D  S+  ++S   + G  +     F
Sbjct: 409 NLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYF 468

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKEL 160
           + M R + +      ++ M+    R+G   EA  + K++
Sbjct: 469 DSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQM 507


>gi|255541017|ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550688|gb|EEF52175.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 954

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 145/584 (24%), Positives = 255/584 (43%), Gaps = 141/584 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    + ++G+Q++    K G   S   +   ++ +  R G   DAL +F ++   
Sbjct: 157 VLSACAALETPNLGEQVYSLATKNGFY-SNGHVRAGMIDLLARNGRFGDALRVFYDVSCE 215

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG-------------- 112
           N   WN++I G +K G    +L +F  M ++    N F+++ +++               
Sbjct: 216 NVVCWNSIISGAVKSGEYWIALDIFYQMSRRFVVPNSFTFSSILTACASLEEVELGKGIQ 275

Query: 113 --------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                               +AK G++  A   F+ MP RN ++W +++  +++   +  
Sbjct: 276 GWVIKCCAKDIFVGTAIVNMYAKCGDIVDAVKEFSRMPVRNVVSWTAIVSGFIKRDDSIS 335

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A++ FKE+      + + + F + TVI ACA    ++   QIH  IL  G   D V+G++
Sbjct: 336 ALKFFKEMRK---MKEETNKFTVTTVISACAKPHFIKEAIQIHCWILKTGYYLDPVVGAA 392

Query: 213 LVNLYGKCGDFNSANQVLNMMK------------------------------------EP 236
           L+N+Y K    +S+  V   M+                                     P
Sbjct: 393 LINMYAKLHAISSSEMVFREMEGVKNPGIWTIMISSFAKNQDSQSAIDLLLKLLQQGLRP 452

Query: 237 DDFCLSALISG--------------------------------YANCGKMNDARRVFDRT 264
           D FCLS+++S                                 Y+ CG + D+ +VF++ 
Sbjct: 453 DKFCLSSVLSVIDSLYLGREIHCYILKTGFVLDLSVGSSLFTMYSKCGSIGDSYKVFEQI 512

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
               ++ W SMISG+  +    +A  L  KM       D +T +++LSA SS+  L+ GK
Sbjct: 513 PVKDNISWTSMISGFTEHGHAYQAFELLRKMLTERSKPDQTTFSAILSAASSIHSLQKGK 572

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++HG+A +  + D+ +V  AL++ YSK G    A K+F  L V D +  +++++ Y    
Sbjct: 573 EIHGYAYRARLGDEALVGGALVNMYSKCGALESARKMFDLLAVKDQVSCSSLVSGY---- 628

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                      +QNG   EAL LF  M   +  +D F+++SV+ 
Sbjct: 629 ---------------------------AQNGWLEEALLLFHEMLISNFTIDSFAVSSVLG 661

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           A A ++ L+ G Q+ A +  +GLDSD  + +SLV  Y KCG I+
Sbjct: 662 AIAGLNRLDFGTQLHAHLVKLGLDSDVSVGSSLVTVYSKCGSIE 705



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 221/518 (42%), Gaps = 110/518 (21%)

Query: 19  HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
           H++   K +H H +K  + NS   +AN LL  Y + G    AL +FD +P +N  SWN +
Sbjct: 63  HTVEETKVIHTHLIKTALFNSNTVVANSLLDWYCKSGALFYALKVFDTIPNKNVISWNVI 122

Query: 79  IEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLIS---------------------GF 113
           I G+ +    E S + F++M       ND ++  ++S                     GF
Sbjct: 123 ISGYNRNSLFEDSWRFFSMMHFSGFDPNDITYGCVLSACAALETPNLGEQVYSLATKNGF 182

Query: 114 --------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
                         A+ G    A  +F D+   N + WNS+I   V++G    A+ +F +
Sbjct: 183 YSNGHVRAGMIDLLARNGRFGDALRVFYDVSCENVVCWNSIISGAVKSGEYWIALDIFYQ 242

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           ++   V     ++F  ++++ ACA L  +E GK I   + +     D  +G+++VN+Y K
Sbjct: 243 MSRRFVVP---NSFTFSSILTACASLEEVELGKGIQGWV-IKCCAKDIFVGTAIVNMYAK 298

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
           CGD                               + DA + F R    + V W +++SG+
Sbjct: 299 CGD-------------------------------IVDAVKEFSRMPVRNVVSWTAIVSGF 327

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
           I  ++   AL  F +MR+     +  T+ +V+SAC+   F++   Q+H    K G   D 
Sbjct: 328 IKRDDSISALKFFKEMRKMKEETNKFTVTTVISACAKPHFIKEAIQIHCWILKTGYYLDP 387

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN- 398
           +V +AL++ Y+K                                  I  ++ +FR M   
Sbjct: 388 VVGAALINMYAK-------------------------------LHAISSSEMVFREMEGV 416

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           K+   W  MI   ++N     A+DL   + +  LR DKF L+SV+S    I SL LG ++
Sbjct: 417 KNPGIWTIMISSFAKNQDSQSAIDLLLKLLQQGLRPDKFCLSSVLSV---IDSLYLGREI 473

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
              +   G   D  + +SL   Y KCG I  D Y + +
Sbjct: 474 HCYILKTGFVLDLSVGSSLFTMYSKCGSIG-DSYKVFE 510



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 211/493 (42%), Gaps = 103/493 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C   H I    Q+H   LK G     + +   L+ MY +    + + ++F EM
Sbjct: 355 VTTVISACAKPHFIKEAIQIHCWILKTGYYLDPV-VGAALINMYAKLHAISSSEMVFREM 413

Query: 68  PR-RNCFSWNAMIEGFMKLGHKEKS----------------------LQLFNVMPQKNDF 104
              +N   W  MI  F K    + +                      L + + +    + 
Sbjct: 414 EGVKNPGIWTIMISSFAKNQDSQSAIDLLLKLLQQGLRPDKFCLSSVLSVIDSLYLGREI 473

Query: 105 SWNMLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
              +L +GF              +K G +  +  +F  +P ++ I+W SMI  +  +G A
Sbjct: 474 HCYILKTGFVLDLSVGSSLFTMYSKCGSIGDSYKVFEQIPVKDNISWTSMISGFTEHGHA 533

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            +A  L +++   L ER + D    + ++ A + + +L+ GK+IH +     L  ++++G
Sbjct: 534 YQAFELLRKM---LTERSKPDQTTFSAILSAASSIHSLQKGKEIHGYAYRARLGDEALVG 590

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
            +LVN+Y K                               CG +  AR++FD       V
Sbjct: 591 GALVNMYSK-------------------------------CGALESARKMFDLLAVKDQV 619

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
             +S++SGY  N    EALLLFH+M  +    D+  ++SVL A + L  L+ G Q+H H 
Sbjct: 620 SCSSLVSGYAQNGWLEEALLLFHEMLISNFTIDSFAVSSVLGAIAGLNRLDFGTQLHAHL 679

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G+  DV V S+L                               +TVYS CG IED  
Sbjct: 680 VKLGLDSDVSVGSSL-------------------------------VTVYSKCGSIEDCW 708

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
             F  + +  LISW +MI   +Q+G  +EAL ++  M +  +R D  +   V+SAC++ +
Sbjct: 709 KAFNQIDDADLISWTTMIASCAQHGKGVEALKIYEQMRREGIRPDSVTFVGVLSACSHAN 768

Query: 451 SLELGEQVFARVT 463
            +E G   F  +T
Sbjct: 769 LVEEGYFHFNSMT 781


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 212/449 (47%), Gaps = 69/449 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L+  ++CG+ T A  +FD+M  RN  SW  +I G ++ G  E +  LF VMP K+  
Sbjct: 116 NSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKDVT 175

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN ++ GF   G ++ A  LF  MP RN I+W S+I     NG + EA+ +F +    +
Sbjct: 176 AWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHK----M 231

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +   +  +  LA  + ACA++     G QIH  I+  G  F+  + +SL++ Y  C   +
Sbjct: 232 LASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLID 291

Query: 225 SANQVLNMMKEPDDFCLSALISGYA-NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           +A+ + N     +    +AL++GY  NC                                
Sbjct: 292 NASSIFNDNVSRNVVVWTALLTGYGLNC-------------------------------- 319

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
             T+AL +F  M R  VL + S+L S L++C  L  ++ G++VH  A K+G+  D+ V++
Sbjct: 320 RHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSN 379

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +L+  Y+K                               CG I D   +F  M  K+++S
Sbjct: 380 SLVVMYTK-------------------------------CGHINDGIAVFTRMSRKNVVS 408

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WNS+IVG +Q+G    AL LF  M +  +  D+ +LA ++SAC +   L  G   F    
Sbjct: 409 WNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFG 468

Query: 464 I-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
              G++      +S+VD   + G ++  E
Sbjct: 469 KNFGIEMTNEHYSSMVDLLGRYGQLEEAE 497



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 188/412 (45%), Gaps = 74/412 (17%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++   ++ G  +++  LFN M       + M+I G+A  G L+ A  LF +MP ++ I
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLI 113

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WNSM+   ++ G    A  +F +++    ER   +     T+I        LE+G+   
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMS----ER---NVVSWTTIING-----LLEFGR--- 158

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
                                         A  +  +M   D    ++++ G+ + G++ 
Sbjct: 159 ---------------------------VEVAECLFRVMPTKDVTAWNSMVHGFFSNGRVE 191

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           DA  +F++  + + + W S+I G   N    EAL++FHKM  +     +STLA  L+AC+
Sbjct: 192 DAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLAS-FKATSSTLACALTACA 250

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           ++     G Q+HG   K G   +  ++++L                              
Sbjct: 251 NICTPFIGVQIHGLIVKTGYCFNEYISASL------------------------------ 280

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
            I+ Y++C  I++A  IF    +++++ W +++ G   N    +AL +F  M ++ +  +
Sbjct: 281 -ISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPN 339

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + SL S +++C  + +++ G +V A    +GL+SD  +S SLV  Y KCG I
Sbjct: 340 QSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHI 391



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L SC    ++  G+++H    K G L S + ++N L+ MY +CG+  D + +F  M
Sbjct: 343 LTSALNSCCGLEAVDRGREVHAVAHKLG-LESDIFVSNSLVVMYTKCGHINDGIAVFTRM 401

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
            R+N  SWN++I G  + G    +L LF  M +     ++ +   L+S    +G L   R
Sbjct: 402 SRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGR 461

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRL 156
             F    +   I      ++SM+    R G   EA  L
Sbjct: 462 CFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEAL 499


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 163/318 (51%), Gaps = 40/318 (12%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C+++  L   +QIH  +L  GL  D +  S L+                        FC 
Sbjct: 28  CSNMEEL---RQIHGQMLKTGLILDEIPASKLLA-----------------------FCA 61

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           S       N G +  AR VFDR    ++ MWN+MI GY ++ E  EALLL+H M  + V 
Sbjct: 62  SP------NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVP 115

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +A T   +L ACSS+  LE  +Q+H H  K+G   ++   ++LL+ YSK G    A  L
Sbjct: 116 HNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLL 175

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F ++   DT+  N+MI  Y+ CG IE A  IF  MP +++ISW SMI G    G P EAL
Sbjct: 176 FDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEAL 235

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M    +++D  +L S + ACA++  L+ G+ + A +    ++ D I+   L+D Y
Sbjct: 236 NLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMY 295

Query: 482 CKCG--------FIKMDE 491
            KCG        F KM+E
Sbjct: 296 AKCGDLEEAIEVFRKMEE 313



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 182/377 (48%), Gaps = 35/377 (9%)

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           +G L  ART+F+ + R N   WN+MI  Y  +    EA+ L+  +   L   +  +A+  
Sbjct: 65  SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM---LYHSVPHNAYTF 121

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++ AC+ ++ALE  +QIH+HI+  G   +    +SL+N+Y K GD  SA  + + + +
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            D    +++I GY  CG++  A  +F+   + + + W SMISG +   +  EAL LFH+M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +  G+  D   L S L AC+ LG L+ GK +H +  K  +  D I+   L+D Y+K    
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAK---- 297

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                                      CG +E+A  +FR M  K +  W +MI G + +G
Sbjct: 298 ---------------------------CGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIIS 474
              EAL+ F  M    +  ++ +   +++AC++   +   + +F  +  I G        
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 475 TSLVDFYCKCGFIKMDE 491
             +VD   + G +K  E
Sbjct: 391 GCMVDLLGRAGLLKEAE 407



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 163/358 (45%), Gaps = 67/358 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C++  ++   +Q+H H +K G   S +   N LL +Y + G+   A LLFD++ +R
Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMG-FGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+MI+G+ K G  E + ++FN MP++N  SW  +ISG   AG+ K A  LF+ M 
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                                                ++ D   L + + ACADL  L+ 
Sbjct: 243 TAG----------------------------------IKLDNVALVSTLQACADLGVLDQ 268

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH++I  + ++ D +LG  L+++Y KCGD   A +V   M+E      +A+ISGYA 
Sbjct: 269 GKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI 328

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+                                 EAL  F KM+  GV  +  T   +
Sbjct: 329 HGR-------------------------------GREALEWFMKMQTAGVEPNQMTFTGI 357

Query: 311 LSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           L+ACS  G +   K +     ++ G    +     ++D   + G+  +A +L   + V
Sbjct: 358 LTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPV 415



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   LQ+C     +  GK +H  ++KK  +     +   L+ MY +CG+  +A+ +F +M
Sbjct: 253 LVSTLQACADLGVLDQGKWIHA-YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM 311

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             +    W AMI G+   G   ++L+ F  M     + N  ++  +++  + AG +  A+
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF  M R +        +  M+    R G  +EA  L + +       ++ +A I   +
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMP------VKPNAAIWGAL 425

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL---YGKCGDFNSANQVLNMMKE 235
           + AC     LE GKQI   IL+     D   G   ++L   +   G++N A +V   MKE
Sbjct: 426 LNACHIHGNLELGKQI-GKILIQ---VDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 32/186 (17%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +A+    +L  CS++   E  +Q+HG   K G+I D I AS LL                
Sbjct: 17  NAAQTLHLLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLL---------------- 57

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                              + G +  A+ +F  +   +   WN+MI G S +  P EAL 
Sbjct: 58  -------------AFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALL 104

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L+ +M    +  + ++   ++ AC+++S+LE  +Q+ A +  +G  S+   + SL++ Y 
Sbjct: 105 LYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYS 164

Query: 483 KCGFIK 488
           K G IK
Sbjct: 165 KSGDIK 170


>gi|255565583|ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536869|gb|EEF38507.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 661

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/549 (25%), Positives = 237/549 (43%), Gaps = 143/549 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C        G Q+H + +K G L   + +   L+ MYM+     +   +FDEM
Sbjct: 99  LSCVLKACACLSCKKFGIQVHDYCVKSGFLED-ISVGTSLVDMYMKSEYVEEGKRVFDEM 157

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-------------------------------- 95
             RN  SW +++ G+   G   ++L+ F                                
Sbjct: 158 EERNVVSWTSLLVGYAHNGLNMEALECFFEMQAGAIKPNPFTFATVLGALADSKAIADKG 217

Query: 96  ---NVMPQKNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
              + M  KN F       N LI+ ++K+G +K A+ +F++M  R+AI+WNSM+  YV N
Sbjct: 218 VQIHTMVIKNGFEATIFVCNSLINMYSKSGMVKNAKAVFDNMVTRDAISWNSMVAGYVAN 277

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ +F  L    +  ++   FI ++VI +CA++  L + +Q+H  +L  G ++D 
Sbjct: 278 GLYLEAIEMFYHLR---LAGVKLTNFIFSSVIKSCANIKELGFARQLHGQVLKGGFEYDH 334

Query: 208 VLGSSLVNLYGKCGDFNSA-----------------------------NQVLNMMKE--- 235
            + ++L+  Y K  + + A                              Q +N+  E   
Sbjct: 335 NIRTALMVAYNKGREIDDAFKIFSMMYGIRNVVSWTAIISGHLQNGLAEQAVNLFCEMSR 394

Query: 236 ----PDDFCLS-------------------------------ALISGYANCGKMNDARRV 260
               P+D+  S                               AL+  Y   G +N+A +V
Sbjct: 395 EGVRPNDYTFSTILAAQPVVSPFEVHAQVIKSDYEKSPSVGTALLDAYVKLGNLNEASKV 454

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-LGF 319
           F+R  D   V W++M++GY    +   A+ +  +M + GV  +  T +SV++AC++    
Sbjct: 455 FERIDDKDIVAWSAMVAGYAQTGDTEGAVKILIQMAKKGVEPNEYTFSSVINACTAPTAA 514

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           +E GKQ H  + K    D + V+SAL+  Y+KRG                          
Sbjct: 515 VEQGKQFHAWSIKSRFNDALCVSSALVTMYAKRG-------------------------- 548

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
                 IE A  +FR    + L+SWNSM+ G +Q+G   +AL++F  M   +L +D  + 
Sbjct: 549 -----EIESANEVFRRQGVRDLVSWNSMVSGYAQHGHARKALEVFKEMQDQNLELDGVTF 603

Query: 440 ASVISACAN 448
             VISAC +
Sbjct: 604 IGVISACTH 612



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 182/380 (47%), Gaps = 73/380 (19%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  + K+  ++  + +F++M  RN ++W S++  Y  NG   EA+  F E+ +  +   
Sbjct: 137 LVDMYMKSEYVEEGKRVFDEMEERNVVSWTSLLVGYAHNGLNMEALECFFEMQAGAI--- 193

Query: 169 QCDAFILATVIGACADLAAL-EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           + + F  ATV+GA AD  A+ + G QIH+ ++ NG +    + +SL+N+Y K        
Sbjct: 194 KPNPFTFATVLGALADSKAIADKGVQIHTMVIKNGFEATIFVCNSLINMYSKS------- 246

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                   G + +A+ VFD      ++ WNSM++GY++N    E
Sbjct: 247 ------------------------GMVKNAKAVFDNMVTRDAISWNSMVAGYVANGLYLE 282

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+ +F+ +R  GV       +SV+ +C+++  L   +Q+HG   K G   D  + +AL+ 
Sbjct: 283 AIEMFYHLRLAGVKLTNFIFSSVIKSCANIKELGFARQLHGQVLKGGFEYDHNIRTALMV 342

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR-IEDAKHIFRTMPN-KSLISWN 405
            Y+K                                GR I+DA  IF  M   ++++SW 
Sbjct: 343 AYNK--------------------------------GREIDDAFKIFSMMYGIRNVVSWT 370

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           ++I G  QNG   +A++LFC M++  +R + ++ +++++A   +S  E    V A+V   
Sbjct: 371 AIISGHLQNGLAEQAVNLFCEMSREGVRPNDYTFSTILAAQPVVSPFE----VHAQVIKS 426

Query: 466 GLDSDQIISTSLVDFYCKCG 485
             +    + T+L+D Y K G
Sbjct: 427 DYEKSPSVGTALLDAYVKLG 446



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 163/364 (44%), Gaps = 68/364 (18%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN-SDLVERLQCDAFILATVIG 180
           A+ +F+  P+++ +  N ++  Y RN    E V LF  ++ SDL+     D   L+ V+ 
Sbjct: 49  AQNVFDRSPKQDVVQCNHLLFDYSRNNSHHEVVNLFVAIHRSDLL----TDGSTLSCVLK 104

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           ACA L+  ++G Q+H + + +G   D  +G+SLV++Y K        +V + M+E     
Sbjct: 105 ACACLSCKKFGIQVHDYCVKSGFLEDISVGTSLVDMYMKSEYVEEGKRVFDEMEE----- 159

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                            R V         V W S++ GY  N  + EAL  F +M+   +
Sbjct: 160 -----------------RNV---------VSWTSLLVGYAHNGLNMEALECFFEMQAGAI 193

Query: 301 LEDASTLASVLSACS-SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
             +  T A+VL A + S    + G Q+H    K G    + V ++L++ YSK GM  +A 
Sbjct: 194 KPNPFTFATVLGALADSKAIADKGVQIHTMVIKNGFEATIFVCNSLINMYSKSGMVKNAK 253

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            +F  +   D I                               SWNSM+ G   NG  +E
Sbjct: 254 AVFDNMVTRDAI-------------------------------SWNSMVAGYVANGLYLE 282

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           A+++F ++    +++  F  +SVI +CANI  L    Q+  +V   G + D  I T+L+ 
Sbjct: 283 AIEMFYHLRLAGVKLTNFIFSSVIKSCANIKELGFARQLHGQVLKGGFEYDHNIRTALMV 342

Query: 480 FYCK 483
            Y K
Sbjct: 343 AYNK 346



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 32/233 (13%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A+ VFDR+     V  N ++  Y  NN   E + LF  + R+ +L D STL+ VL AC+ 
Sbjct: 49  AQNVFDRSPKQDVVQCNHLLFDYSRNNSHHEVVNLFVAIHRSDLLTDGSTLSCVLKACAC 108

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           L   + G QVH +  K G ++D+ V ++L+D Y K           SE            
Sbjct: 109 LSCKKFGIQVHDYCVKSGFLEDISVGTSLVDMYMK-----------SEY----------- 146

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
                    +E+ K +F  M  ++++SW S++VG + NG  +EAL+ F  M    ++ + 
Sbjct: 147 ---------VEEGKRVFDEMEERNVVSWTSLLVGYAHNGLNMEALECFFEMQAGAIKPNP 197

Query: 437 FSLASVISACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           F+ A+V+ A A+  ++ + G Q+   V   G ++   +  SL++ Y K G +K
Sbjct: 198 FTFATVLGALADSKAIADKGVQIHTMVIKNGFEATIFVCNSLINMYSKSGMVK 250



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 74/357 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +++SC     +   +QLH   LK G       I   L+  Y +     DA  +F  M
Sbjct: 302 FSSVIKSCANIKELGFARQLHGQVLKGG-FEYDHNIRTALMVAYNKGREIDDAFKIFSMM 360

Query: 68  PR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNM-------------- 108
              RN  SW A+I G ++ G  E+++ LF  M ++    ND++++               
Sbjct: 361 YGIRNVVSWTAIISGHLQNGLAEQAVNLFCEMSREGVRPNDYTFSTILAAQPVVSPFEVH 420

Query: 109 -----------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L+  + K G L  A  +F  +  ++ +AW++M+  Y + G   
Sbjct: 421 AQVIKSDYEKSPSVGTALLDAYVKLGNLNEASKVFERIDDKDIVAWSAMVAGYAQTGDTE 480

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGAC-ADLAALEYGKQIHSHILVNGLDFDSVLG 210
            AV++  ++    VE    + +  ++VI AC A  AA+E GKQ H+              
Sbjct: 481 GAVKILIQMAKKGVEP---NEYTFSSVINACTAPTAAVEQGKQFHA-------------- 523

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTDTSS 269
                 +     FN            D  C+S AL++ YA  G++  A  VF R      
Sbjct: 524 ------WSIKSRFN------------DALCVSSALVTMYAKRGEIESANEVFRRQGVRDL 565

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           V WNSM+SGY  +    +AL +F +M+   +  D  T   V+SAC+  G ++    V
Sbjct: 566 VSWNSMVSGYAQHGHARKALEVFKEMQDQNLELDGVTFIGVISACTHAGLVDEEPNV 622


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/516 (26%), Positives = 231/516 (44%), Gaps = 66/516 (12%)

Query: 32  LKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
           L   I    L     LL  Y R G   DA  +FD M  RN  +WNAM+  +++ G    +
Sbjct: 86  LADAISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLA 145

Query: 92  LQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            +LF+ MP ++  SWN +++G+  +  ++ AR LF  MP RN ++W  MI  YV      
Sbjct: 146 RKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYV---LIE 202

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +  R +    + L E +  +   L +V+ A   L      + IH  +   G + D V+G+
Sbjct: 203 QHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGT 262

Query: 212 SLVNLYGK-CGDFNSANQVLNMMKEPDDFCLSALI------------------------- 245
           +++N Y K     +SA +    M   +++  S +I                         
Sbjct: 263 AILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVP 322

Query: 246 ------SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR--- 296
                 +G A  G+++DA+ +FD+  + + V WN+MI+GY+ N    EA  LF++M    
Sbjct: 323 SRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRN 382

Query: 297 ------------RNGVLEDASTLASVLS----------------ACSSLGFLEHGKQVHG 328
                       RNG  E A      L                 ACS++  LE GKQVH 
Sbjct: 383 TISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHS 442

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   +  V +AL+  Y K        ++F  + V DT+  N+ ++        ++
Sbjct: 443 LAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDE 502

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  MP+  ++SW ++I   +Q     EA+++F +M       +   L  ++    N
Sbjct: 503 ARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGN 562

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           + + +LG+Q+      +G+DS  +++ +LV  Y KC
Sbjct: 563 LGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKC 598



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 207/443 (46%), Gaps = 36/443 (8%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           + G   DA  ++   P ++  S  +M+ G  + G  + +  LF+ + + N  SWN +I+G
Sbjct: 302 QAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITG 361

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           + +   +  A  LFN MP RN I+W  MI  Y RNG + +A+   + L+    + +    
Sbjct: 362 YMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHR---KGMLPSL 418

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
             L +   AC+++ ALE GKQ+HS  +  G  F+S + ++L+ LYGK     S  Q+ + 
Sbjct: 419 SSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDR 478

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           M   D    ++ +S        ++AR VF+       V W ++IS     ++  EA+ +F
Sbjct: 479 MTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIF 538

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             M     L +   L  +L    +LG  + G+Q+H  A K+G+   ++VA+AL+  Y K 
Sbjct: 539 RSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFK- 597

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                 C     LKV+D+                         M  + + +WN++I G +
Sbjct: 598 ------CSSADSLKVFDS-------------------------MEERDIFTWNTIITGYA 626

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQ 471
           Q+G   EA+ ++  M    +  ++ +   ++ AC++   ++ G Q F  ++   GL    
Sbjct: 627 QHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLL 686

Query: 472 IISTSLVDFYCKCGFIKMDEYYL 494
                +VD   + G ++  E+++
Sbjct: 687 EHYACMVDLLGRAGDVQGAEHFI 709



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 184/442 (41%), Gaps = 84/442 (19%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I    + G L  AR +F+ MP R+ IAWNSMI  Y  NG       L   ++      L+
Sbjct: 40  IRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGG---NLR 96

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQ 228
               +L+    A         G+   +  + +G+   ++V  +++V  Y + GD   A +
Sbjct: 97  TGTILLSGYARA---------GRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARK 147

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + + M   D    + +++GY +   M +AR +F+R  + + V W  MISGY+   +   A
Sbjct: 148 LFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRA 207

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             +F  M   G+  +   L SVLSA   LG     + +H    K G   DV+V +A+L+ 
Sbjct: 208 WDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNG 267

Query: 349 YSKR-GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS------- 400
           Y+K   M   A K F  +   +    +T+I   S  GRI+DA  +++  P KS       
Sbjct: 268 YTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSM 327

Query: 401 ------------------------LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
                                   ++SWN+MI G  QN    EA DLF   N++  R + 
Sbjct: 328 LTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLF---NRMPFR-NT 383

Query: 437 FSLASVIS-----------------------------------ACANISSLELGEQVFAR 461
            S A +I+                                   AC+NI +LE G+QV + 
Sbjct: 384 ISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSL 443

Query: 462 VTIIGLDSDQIISTSLVDFYCK 483
               G   +  +  +L+  Y K
Sbjct: 444 AVKAGCQFNSYVCNALITLYGK 465



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 69/313 (22%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           +C+   ++  GKQ+H   +K G   NS   + N L+ +Y +  +      +FD M  ++ 
Sbjct: 427 ACSNIEALETGKQVHSLAVKAGCQFNSY--VCNALITLYGKYRSIGSVRQIFDRMTVKDT 484

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
            S+N+ +   ++    +++  +FN MP  +  SW  +IS  A+A +              
Sbjct: 485 VSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQ-------------- 530

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
                              EAV +F+ +   L ER   +  IL  ++G   +L A + G+
Sbjct: 531 -----------------GNEAVEIFRSM---LHERELPNPPILTILLGLSGNLGAPQLGQ 570

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH+  +  G+D   V+ ++LV++Y KC   +S  +V + M+E D F  + +I+GYA  G
Sbjct: 571 QIHTIAIKLGMDSGLVVANALVSMYFKCSSADSL-KVFDSMEERDIFTWNTIITGYAQHG 629

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
              +A R           M+  M+S                     GVL +  T   +L 
Sbjct: 630 LGREAIR-----------MYQLMVSA--------------------GVLPNEVTFVGLLH 658

Query: 313 ACSSLGFLEHGKQ 325
           ACS  G ++ G Q
Sbjct: 659 ACSHSGLVDEGHQ 671



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 14/253 (5%)

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           + P     SA I      G++++AR VFD       + WNSMI  Y +N        L  
Sbjct: 29  RSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLAD 88

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            +   G L   + L   LS  +  G +   ++V      +GV  + +  +A++  Y + G
Sbjct: 89  AI-SGGNLRTGTIL---LSGYARAGRVRDARRVFD---GMGV-RNTVAWNAMVTCYVQNG 140

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG--- 410
             + A KLF  +   D    NTM+T Y     +E+A+++F  MP ++ +SW  MI G   
Sbjct: 141 DITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVL 200

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           + Q+G    A D+F  M    +  ++ +L SV+SA  ++    + E +   V   G + D
Sbjct: 201 IEQHG---RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERD 257

Query: 471 QIISTSLVDFYCK 483
            ++ T++++ Y K
Sbjct: 258 VVVGTAILNGYTK 270



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 106/229 (46%), Gaps = 30/229 (13%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            +G+Q+H   +K G ++S L +AN L+ MY +C +  D+L +FD M  R+ F+WN +I G
Sbjct: 567 QLGQQIHTIAIKLG-MDSGLVVANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTIITG 624

Query: 82  FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA- 136
           + + G   ++++++ +M       N+ ++  L+   + +G +      F  M     +  
Sbjct: 625 YAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTP 684

Query: 137 ----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
               +  M+    R G  + A     ++       ++ D+ I + ++GAC     +E G+
Sbjct: 685 LLEHYACMVDLLGRAGDVQGAEHFIYDMP------IEPDSVIWSALLGACKIHKNVEIGR 738

Query: 193 QIHSHILVNGLDFDSVLGSS------LVNLYGKCGDFNSANQVLNMMKE 235
           +    +        S+  S+      L N+Y   G ++   +V  +MKE
Sbjct: 739 RAAEKLF-------SIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKE 780


>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1490

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 241/482 (50%), Gaps = 36/482 (7%)

Query: 6   DYL-ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           D+L  ++LQ C     +  GK +H   +K G ++S L ++N +L +Y +CG    A   F
Sbjct: 181 DFLFPKILQGCANCGDVETGKLIHSVVIKLG-MSSCLRVSNSILAVYAKCGEWDFATKFF 239

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELK 120
             M  R+  +WN+++  + + G  E++++L   M ++       +WN+LI G+ + G+  
Sbjct: 240 RRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEMEKEGISPGLVTWNILIGGYNQLGKCD 299

Query: 121 TARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            A  L   M       +   W +MI   + NG   +A+ +F+++    +  +  +A  + 
Sbjct: 300 AAMDLMQKMENFGITADVFTWTAMISGLIHNGMRYQALDMFRKM---FLAGVVPNAVTIM 356

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           + + AC+ L  +  G ++HS  +  G   D ++G+SLV++Y KCG    A +V + +K  
Sbjct: 357 SAVSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNK 416

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLF 292
           D +  +++I+GY   G    A  +F R  D +     + WN+MISGYI N ++ EA+ LF
Sbjct: 417 DVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPNIITWNTMISGYIKNGDEGEAMDLF 476

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG------------HACKVGVIDDVI 340
            +M ++G ++  +   +++ A    G++++GK+                   V ++  + 
Sbjct: 477 QRMEKDGKVQRNTATWNLIIA----GYIQNGKKDDALEIFRKMQFSRFMPNSVTILSLLP 532

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
             + LL T   R +    C L   L     +  N +   Y+  G I  +K IF  M  K 
Sbjct: 533 ACANLLGTKMVREI--HGCVLRRNLDAIHAV-KNALTDTYAKSGDIGYSKTIFMGMETKD 589

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           +I+WNS+I G   +GS   AL+LF  M    ++ ++ +L+S+I A   + +++ G++VF 
Sbjct: 590 IITWNSLIGGYVLHGSYGPALELFNQMKTQGIKPNRGTLSSIILAHGLMGNVDEGKKVFY 649

Query: 461 RV 462
            +
Sbjct: 650 SI 651



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 220/480 (45%), Gaps = 82/480 (17%)

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F + P+ + F    L+S +AK G L  AR +F+ M  RN   W++MI  Y R    RE  
Sbjct: 107 FGLFPEPDVFVETKLLSMYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSRENRWREVS 166

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           +LF+ +   + E +  D F+   ++  CA+   +E GK IHS ++  G+     + +S++
Sbjct: 167 KLFRLM---MEEGVLPDDFLFPKILQGCANCGDVETGKLIHSVVIKLGMSSCLRVSNSIL 223

Query: 215 NLYGKCGDFNSANQVLNMMKEPD---------DFCLSA---------------------- 243
            +Y KCG+++ A +    MKE D          +C +                       
Sbjct: 224 AVYAKCGEWDFATKFFRRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEMEKEGISPGLV 283

Query: 244 ----LISGYANCGKMNDARRVFDRTTD---TSSVM-WNSMISGYISNNEDTEALLLFHKM 295
               LI GY   GK + A  +  +  +   T+ V  W +MISG I N    +AL +F KM
Sbjct: 284 TWNILIGGYNQLGKCDAAMDLMQKMENFGITADVFTWTAMISGLIHNGMRYQALDMFRKM 343

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
              GV+ +A T+ S +SACS L  +  G +VH  A K+G IDDV+V ++L+D YSK G  
Sbjct: 344 FLAGVVPNAVTIMSAVSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKL 403

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGL 411
            DA K+F  +K  D    N+MIT Y   G    A  +F  M +     ++I+WN+MI G 
Sbjct: 404 EDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPNIITWNTMISGY 463

Query: 412 SQNGSPIEALDLFCNMNK-------------------------------LDLRMDKF--- 437
            +NG   EA+DLF  M K                                 ++  +F   
Sbjct: 464 IKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQFSRFMPN 523

Query: 438 --SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
             ++ S++ ACAN+   ++  ++   V    LD+   +  +L D Y K G I   +   M
Sbjct: 524 SVTILSLLPACANLLGTKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYSKTIFM 583



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 147/320 (45%), Gaps = 45/320 (14%)

Query: 211 SSLVNLYGKCGDFNSAN--QVLN----MMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
           S+ +NL   C D  S +  ++L+    +  EPD F  + L+S YA CG + DAR+VFD  
Sbjct: 82  STYLNLLESCIDSGSIHLGRILHARFGLFPEPDVFVETKLLSMYAKCGCLVDARKVFDSM 141

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            + +   W++MI  Y   N   E   LF  M   GVL D      +L  C++ G +E GK
Sbjct: 142 RERNLYTWSAMIGAYSRENRWREVSKLFRLMMEEGVLPDDFLFPKILQGCANCGDVETGK 201

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H    K+G+   + V++++L  Y+K G    A K F  +K  D +  N+++  Y   G
Sbjct: 202 LIHSVVIKLGMSSCLRVSNSILAVYAKCGEWDFATKFFRRMKERDVVAWNSVLLAYCQNG 261

Query: 385 RIEDAKHIFRTMPNK----SLISWN----------------------------------- 405
           + E+A  +   M  +     L++WN                                   
Sbjct: 262 KHEEAVELVEEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMENFGITADVFTWT 321

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +MI GL  NG   +ALD+F  M    +  +  ++ S +SAC+ +  + LG +V +    +
Sbjct: 322 AMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSYLKVINLGSEVHSIAVKM 381

Query: 466 GLDSDQIISTSLVDFYCKCG 485
           G   D ++  SLVD Y KCG
Sbjct: 382 GFIDDVLVGNSLVDMYSKCG 401


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/527 (27%), Positives = 236/527 (44%), Gaps = 108/527 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LLQ C  + +I +G+++H          + + +  RL+ MY  C +P D+ L+F+   R+
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS------------------------- 105
           N F WNA++ G+++      ++ +F  M    +F                          
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N LI+ + K G +++A  +F+ MP+RN ++WNS+++  + NG  
Sbjct: 219 HGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVF 278

Query: 151 REAVRLFKE-LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            E+  LFK  LN D  E L  D   + TVI  CA    +  G   H   L  GL      
Sbjct: 279 EESYGLFKGLLNGD--EGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL------ 330

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                     CG+    + +L+M               Y+ CG + +AR +FD T + + 
Sbjct: 331 ----------CGELKVNSSLLDM---------------YSKCGYLCEARVLFD-TNEKNV 364

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSAC-SSLGFLEHGKQVH 327
           + WNSMI GY  + +   A  L  KM+  + V  +  TL +VL  C   + FL+  K++H
Sbjct: 365 ISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL-KEIH 423

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G+A + G I                                D ++ N  +  Y+ CG + 
Sbjct: 424 GYALRHGFIQS------------------------------DELVANAFVAGYAKCGSLH 453

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  M +K + SWN++I G  QNG P +ALDL+  M    L  D F++AS++SACA
Sbjct: 454 YAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACA 513

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            + SL  G+++   +   G + D+ I  SLV  Y +CG I + + + 
Sbjct: 514 RLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFF 560



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 145/563 (25%), Positives = 242/563 (42%), Gaps = 123/563 (21%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C     + +G   H   LK G L   L + + LL MY +CG   +A +LFD    +N  S
Sbjct: 309 CARQGEVRLGMVFHGLALKLG-LCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVIS 366

Query: 75  WNAMIEGF---------------MKLGHKEK--SLQLFNVMP------------------ 99
           WN+MI G+               M++  K K   + L NV+P                  
Sbjct: 367 WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYA 426

Query: 100 ------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                 Q ++   N  ++G+AK G L  A  +F  M  +   +WN++I  +V+NGF R+A
Sbjct: 427 LRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKA 486

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + L+  +       L+ D F +A+++ ACA L +L  GK+IH  +L NG + D  +  SL
Sbjct: 487 LDLYLLMRGS---GLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISL 543

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           V+L                               Y  CGK+  A+  FD   + + V WN
Sbjct: 544 VSL-------------------------------YVQCGKILLAKLFFDNMEEKNLVCWN 572

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MI+G+  N    +AL +FH+M  + +  D  ++   L ACS +  L  GK++H  A K 
Sbjct: 573 TMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKS 632

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            + +   V  +L+D Y+K G    +  +F  + +   +  N +IT Y   G    A  +F
Sbjct: 633 HLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELF 692

Query: 394 RTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNM---------------------- 427
           ++M N       +++ +++   +  G   E L+    M                      
Sbjct: 693 KSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGR 752

Query: 428 -----------NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ---II 473
                      N+L  + D    +S++S+C N   L++GE+V  ++  +G D  +   +I
Sbjct: 753 AGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLI 812

Query: 474 STSLVDFYCKCGFIKMDEYYLMQ 496
           S    +FY + G  K DE   M+
Sbjct: 813 S----NFYARLG--KWDEVRKMR 829



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 137/318 (43%), Gaps = 66/318 (20%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           ++  ++  C +   +E G++IH+ I  +     D VL + LV +Y  C            
Sbjct: 95  LIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSIC------------ 142

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
              P D CL                  VF+ +   +  +WN+++SGY+ N+   +A+ +F
Sbjct: 143 -DSPYDSCL------------------VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVF 183

Query: 293 HKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
            +M      + D  TL  V+ AC  +  +  G+ VHG A K  V+ DV V +AL+  Y K
Sbjct: 184 VEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGK 243

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G                                +E A  +F  MP ++L+SWNS++   
Sbjct: 244 FGF-------------------------------VESAVKVFDKMPQRNLVSWNSVMYAC 272

Query: 412 SQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
            +NG   E+  LF  +   D  L  D  ++ +VI  CA    + LG         +GL  
Sbjct: 273 LENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCG 332

Query: 470 DQIISTSLVDFYCKCGFI 487
           +  +++SL+D Y KCG++
Sbjct: 333 ELKVNSSLLDMYSKCGYL 350


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 220/457 (48%), Gaps = 73/457 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKND 103
           N +++  + CG+   A  LFDEMPRR   SW  +++G ++LG  +++  LF  M P   D
Sbjct: 121 NSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRD 180

Query: 104 FS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            + WN +I G+   G +  A  LF  MP R+ I+W+SMI     NG + +A+ LF+    
Sbjct: 181 VAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFR---- 236

Query: 163 DLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           D+V    C  + +L   + A A + A   G QIH  +                    K G
Sbjct: 237 DMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVF-------------------KLG 277

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           D++            D+F  ++L++ YA C +M  A RVF      S V+W ++++GY  
Sbjct: 278 DWHF-----------DEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGL 326

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N++  EAL +F +M R  V+ + S+  S L++C  L  +E GK +H  A K+G+     V
Sbjct: 327 NDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYV 386

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
             +L+  YSK G  SDA                                ++F+ +  K++
Sbjct: 387 GGSLVVMYSKCGYVSDAV-------------------------------YVFKGINEKNV 415

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE---QV 458
           +SWNS+IVG +Q+G  + AL LF  M +  +  D  ++  ++SAC++   L+      + 
Sbjct: 416 VSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRY 475

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           F +   + L  +    TS+VD   +CG ++  E  +M
Sbjct: 476 FGQKRSVTLTIEHY--TSMVDVLGRCGELEEAEAVVM 510



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 177/382 (46%), Gaps = 48/382 (12%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  AR +F+ +P  +   +  M+H Y +N   REA+ LF+ +          D     ++
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFK-------DVVSWNSI 123

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEP- 236
           I  C     L  G  + +  L + +   +V+  ++LV+   + G    A  +   M EP 
Sbjct: 124 IKGC-----LHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAM-EPM 177

Query: 237 --DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
             D    +A+I GY + G+++DA ++F +      + W+SMI+G   N +  +AL+LF  
Sbjct: 178 DRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRD 237

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M  +GV   +  L   LSA + +     G Q+H    K+G            D +     
Sbjct: 238 MVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLG------------DWH----- 280

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                        +D  +  +++T Y+ C ++E A  +F  +  KS++ W +++ G   N
Sbjct: 281 -------------FDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLN 327

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               EAL++F  M ++D+  ++ S  S +++C  +  +E G+ + A    +GL+S   + 
Sbjct: 328 DKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVG 387

Query: 475 TSLVDFYCKCGFIKMDEYYLMQ 496
            SLV  Y KCG++  D  Y+ +
Sbjct: 388 GSLVVMYSKCGYVS-DAVYVFK 408



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 11/244 (4%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+  + N   +++AR +FD+       ++  M+  Y  N+   EA+ LF ++      +D
Sbjct: 61  LLFHHLNNRSLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIP----FKD 116

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             +  S++  C   G +   +++     +      V+  + L+D   + G+  +A  LF 
Sbjct: 117 VVSWNSIIKGCLHCGDIVTARKLFDEMPR----RTVVSWTTLVDGLLRLGIVQEAETLFW 172

Query: 364 ELKVYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
            ++  D      N MI  Y S GR++DA  +F  MP++ +ISW+SMI GL  NG   +AL
Sbjct: 173 AMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQAL 232

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDF 480
            LF +M    + +    L   +SA A I +  +G Q+   V  +G    D+ +S SLV F
Sbjct: 233 VLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTF 292

Query: 481 YCKC 484
           Y  C
Sbjct: 293 YAGC 296



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 139/332 (41%), Gaps = 55/332 (16%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           VG Q+H    K G  +    ++  L+  Y  C     A  +F E+  ++   W A++ G+
Sbjct: 265 VGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGY 324

Query: 83  MKLGHKEKSLQLF------NVMPQKNDFSWNM---------------------------- 108
                  ++L++F      +V+P ++ F+  +                            
Sbjct: 325 GLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGG 384

Query: 109 -----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                L+  ++K G +  A  +F  +  +N ++WNS+I    ++G    A+ LF ++   
Sbjct: 385 YVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQM--- 441

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG----SSLVNLYGK 219
           L E +  D   +  ++ AC+    L+  +    +    G      L     +S+V++ G+
Sbjct: 442 LREGVDPDGITVTGLLSACSHSGMLQKARCFFRYF---GQKRSVTLTIEHYTSMVDVLGR 498

Query: 220 CGDFNSANQV-LNMMKEPDDFCLSALISGYANCGKMNDARR----VFDRTTDTSSVMWNS 274
           CG+   A  V ++M  + +     AL+S       ++ A+R    +F+   D S+  +  
Sbjct: 499 CGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAA-YVL 557

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           + + Y S++   E  L+  KM+ NGV++   +
Sbjct: 558 LSNLYASSSRWAEVALIRRKMKHNGVVKKPGS 589


>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
          Length = 661

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 209/443 (47%), Gaps = 46/443 (10%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y++ G    A  LFD M  +N  +W  M+ G+ + G  +++ +LF++MP +N FSW
Sbjct: 129 MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSW 188

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++ G+A  G L+ AR +F+ MP RN +AW  M+  YV NG  +EA+ LF  +    + 
Sbjct: 189 TTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQ--MN 246

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               +A     +     D A   + K  H ++         V  + +V    + G  + A
Sbjct: 247 SYSWNAMATGLMSAGKVDDAVQLFDKMPHKNV---------VSWTIMVTGLAQNGFVSRA 297

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +  + M + D    +++I+ Y N G++NDA+R+FD     + V WN +I GY  NN   
Sbjct: 298 REFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKD 357

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL LF  M R+ V  D++TL SVL    S   +   +Q+HG + K+G   +  + + L+
Sbjct: 358 EALRLFLLMLRSAVSPDSTTLISVLVVSESTMEV---RQIHGLSTKLGYQPETNLGNTLV 414

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             YS+ G  S A   F                               R +  K  I+W S
Sbjct: 415 SMYSRSGDLSSAWLAF-------------------------------RRLNEKDAITWTS 443

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-II 465
           MI  L+ +G    AL  F  M +   +    +  +V+SAC ++  +E G ++F  ++ + 
Sbjct: 444 MIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVY 503

Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
           GL       + LVD   + G+++
Sbjct: 504 GLGPTIEHYSCLVDLLGRAGYVR 526



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 166/361 (45%), Gaps = 51/361 (14%)

Query: 31  FLKKGILNSTLPIANRLLQM-----------YMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  G +   L + NR+ QM            M  G   DA+ LFD+MP +N  SW  M+
Sbjct: 226 YVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMV 285

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            G  + G   ++ + F+ MP+K+  +WN +I+ +   G++  A+ LF+ MP +N + WN 
Sbjct: 286 TGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNI 345

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  Y  N    EA+RLF  +   L   +  D+  L +V+      + +E  +QIH    
Sbjct: 346 IIDGYSMNNLKDEALRLFLLM---LRSAVSPDSTTLISVL--VVSESTMEV-RQIHGLST 399

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             G   ++ LG++LV++Y + GD +SA      + E D                      
Sbjct: 400 KLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKD---------------------- 437

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                    ++ W SMI    ++     AL  F +M R G    ++T  +VLSAC+ +G 
Sbjct: 438 ---------AITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGL 488

Query: 320 LEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTM 376
           +E G+++      V G+   +   S L+D   + G   +A ++   ++  + D  +L T+
Sbjct: 489 VEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTL 548

Query: 377 I 377
           +
Sbjct: 549 L 549



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 181/363 (49%), Gaps = 23/363 (6%)

Query: 125 LFNDMPRRN-AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           +F+ MPRR+ A+A+ +M+  ++ +     A  L++    D      C    L TV+    
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPD------CRGIHLDTVMLD-- 131

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
               ++ G+   +  L +G+   +V+  + +V+ Y + G  + A ++ ++M   + F  +
Sbjct: 132 --GYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWT 189

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
            ++ GYA+ G + +AR +FD+  + + V W  M+  Y+ N    EAL LF++M +     
Sbjct: 190 TMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQ----M 245

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           ++ +  ++ +   S G ++   Q+        V+   I+ + L    ++ G  S A + F
Sbjct: 246 NSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGL----AQNGFVSRAREFF 301

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   D    N+MIT Y++ G++ DA+ +F  MP+K+L++WN +I G S N    EAL 
Sbjct: 302 DRMPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALR 361

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           LF  M +  +  D  +L SV+    + S++E+  Q+    T +G   +  +  +LV  Y 
Sbjct: 362 LFLLMLRSAVSPDSTTLISVL--VVSESTMEV-RQIHGLSTKLGYQPETNLGNTLVSMYS 418

Query: 483 KCG 485
           + G
Sbjct: 419 RSG 421



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 22/222 (9%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           +Q+H    K G    T  + N L+ MY R G+ + A L F  +  ++  +W +MI+    
Sbjct: 392 RQIHGLSTKLGYQPET-NLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALAN 450

Query: 85  LGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-- 136
            G    +LQ F  M      P    F+   ++S     G ++  R +F  +     +   
Sbjct: 451 HGCAPCALQGFAQMLRCGYKPSSTTFT--AVLSACNHVGLVEKGRKIFKSISHVYGLGPT 508

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              ++ ++    R G+ REA    KE+  D ++R  CD  IL T++G+C     +E G+ 
Sbjct: 509 IEHYSCLVDLLGRAGYVREA----KEV-VDGMQRDMCDEAILGTLLGSCMTHNEVEVGRA 563

Query: 194 IHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
           +   ++   +D     G +L+ N++   G +N    V  +MK
Sbjct: 564 VGEDLV--KIDPSGSGGYTLLANVFASGGMWNEVASVWKIMK 603


>gi|255545044|ref|XP_002513583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547491|gb|EEF48986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 206/448 (45%), Gaps = 68/448 (15%)

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S N+ I+ +A  G+L  AR LF+ MP+R +++WN+MI  Y++ G  +E+  L   ++   
Sbjct: 37  STNIAITRYAIKGQLDFARCLFDKMPQRTSVSWNTMISSYLKWGKFKESFSLLSLMHRS- 95

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
               Q D    +T++  C    +   GKQIH  +L +G     ++GS L+  YG C   +
Sbjct: 96  --NTQLDETTFSTILSVCTRTQSFCDGKQIHCLVLKSGCGSFELVGSVLLYFYGNCSQID 153

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V + + + ++   S+++  Y   G + DA  +F +      V W+ +ISGY  +  
Sbjct: 154 DAKRVFDELHDKNEVVWSSMVVCYVQRGLLTDAYDLFVKMPKKEVVSWSKLISGYAKSEV 213

Query: 285 DTE-ALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
            +E AL LF  MR +G VL +  TL SV+  C  LG L  G  VHG   K G   D  ++
Sbjct: 214 RSEKALELFQLMRESGEVLPNEFTLDSVIRVCGKLGALSEGMVVHGILIKTGFEFDQSIS 273

Query: 343 SALLDTY--------SKR-----------------------GMPSDACKLFSELKVYDTI 371
            AL+  Y        +KR                       G   DA  +F+     ++ 
Sbjct: 274 GALVQFYCDCEAIDDAKRIYDGIAYPCSSASNSLIEGYVLLGRIKDADLIFNRATEKNSA 333

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS---------------------------- 403
           L N M+  YS  GR+ED+K +F  MP K++IS                            
Sbjct: 334 LCNLMVKAYSMSGRVEDSKTLFEKMPQKTIISSNTMISVYSRNGELDKALMLFEQTKDQR 393

Query: 404 ----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
               WNSM+ G  QN    EAL L+  M +  +   + + + +  AC+ I SL+ G+ + 
Sbjct: 394 NPVTWNSMLSGYVQNEQHEEALKLYVTMKRSSVDCTRSTFSVLFRACSYIGSLQQGKMLH 453

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           A +      S+  + TSLVD Y KCG I
Sbjct: 454 ANLIKTPFASNVYVGTSLVDMYSKCGSI 481



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 208/510 (40%), Gaps = 129/510 (25%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           +T++D    + +L  C    S   GKQ+H   LK G  +  L + + LL  Y  C    D
Sbjct: 96  NTQLDETTFSTILSVCTRTQSFCDGKQIHCLVLKSGCGSFEL-VGSVLLYFYGNCSQIDD 154

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
           A  +FDE+  +N   W++M+  +++ G    +  LF  MP+K   SW+ LISG+AK+   
Sbjct: 155 AKRVFDELHDKNEVVWSSMVVCYVQRGLLTDAYDLFVKMPKKEVVSWSKLISGYAKSE-- 212

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
                                    VR+  A E  +L +E    L      + F L +VI
Sbjct: 213 -------------------------VRSEKALELFQLMRESGEVLP-----NEFTLDSVI 242

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
             C  L AL  G  +H  ++  G +FD  +  +LV  Y  C   + A ++ + +  P   
Sbjct: 243 RVCGKLGALSEGMVVHGILIKTGFEFDQSISGALVQFYCDCEAIDDAKRIYDGIAYPCSS 302

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMW--------------------------- 272
             ++LI GY   G++ DA  +F+R T+ +S +                            
Sbjct: 303 ASNSLIEGYVLLGRIKDADLIFNRATEKNSALCNLMVKAYSMSGRVEDSKTLFEKMPQKT 362

Query: 273 ----NSMISGYISNNEDTEALLLFHK--------------------------------MR 296
               N+MIS Y  N E  +AL+LF +                                M+
Sbjct: 363 IISSNTMISVYSRNGELDKALMLFEQTKDQRNPVTWNSMLSGYVQNEQHEEALKLYVTMK 422

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           R+ V    ST + +  ACS +G L+ GK +H +  K     +V V ++L+D YSK     
Sbjct: 423 RSSVDCTRSTFSVLFRACSYIGSLQQGKMLHANLIKTPFASNVYVGTSLVDMYSK----- 477

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
                                     CG I DAK  F ++   ++ +W ++I G + +G 
Sbjct: 478 --------------------------CGSIFDAKKSFSSISAPNVAAWTALINGYAHHGF 511

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             EA+ LF +M +  +  +  +   +++AC
Sbjct: 512 GSEAILLFQHMLEQKVVPNGATFVGILTAC 541



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 5/256 (1%)

Query: 237 DDFCLSAL---ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           DD C  +    I+ YA  G+++ AR +FD+    +SV WN+MIS Y+   +  E+  L  
Sbjct: 31  DDPCTVSTNIAITRYAIKGQLDFARCLFDKMPQRTSVSWNTMISSYLKWGKFKESFSLLS 90

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            M R+    D +T +++LS C+       GKQ+H    K G     +V S LL  Y    
Sbjct: 91  LMHRSNTQLDETTFSTILSVCTRTQSFCDGKQIHCLVLKSGCGSFELVGSVLLYFYGNCS 150

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
              DA ++F EL   + ++ ++M+  Y   G + DA  +F  MP K ++SW+ +I G ++
Sbjct: 151 QIDDAKRVFDELHDKNEVVWSSMVVCYVQRGLLTDAYDLFVKMPKKEVVSWSKLISGYAK 210

Query: 414 NGSPIE-ALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +    E AL+LF  M +  ++  ++F+L SVI  C  + +L  G  V   +   G + DQ
Sbjct: 211 SEVRSEKALELFQLMRESGEVLPNEFTLDSVIRVCGKLGALSEGMVVHGILIKTGFEFDQ 270

Query: 472 IISTSLVDFYCKCGFI 487
            IS +LV FYC C  I
Sbjct: 271 SISGALVQFYCDCEAI 286



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 134/286 (46%), Gaps = 35/286 (12%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
           GI       +N L++ Y+  G   DA L+F+    +N    N M++ +   G  E S  L
Sbjct: 295 GIAYPCSSASNSLIEGYVLLGRIKDADLIFNRATEKNSALCNLMVKAYSMSGRVEDSKTL 354

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREA 153
           F  MPQK   S N +IS +++ GEL  A  LF     +RN + WNSM+  YV+N    EA
Sbjct: 355 FEKMPQKTIISSNTMISVYSRNGELDKALMLFEQTKDQRNPVTWNSMLSGYVQNEQHEEA 414

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           ++L+  +    V+   C     + +  AC+ + +L+ GK +H++++      +  +G+SL
Sbjct: 415 LKLYVTMKRSSVD---CTRSTFSVLFRACSYIGSLQQGKMLHANLIKTPFASNVYVGTSL 471

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           V++Y K                               CG + DA++ F   +  +   W 
Sbjct: 472 VDMYSK-------------------------------CGSIFDAKKSFSSISAPNVAAWT 500

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           ++I+GY  +   +EA+LLF  M    V+ + +T   +L+AC   G 
Sbjct: 501 ALINGYAHHGFGSEAILLFQHMLEQKVVPNGATFVGILTACDRAGL 546


>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
 gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 194/415 (46%), Gaps = 72/415 (17%)

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           + K G    S +LF  MP++N  +WN +ISG+ K G++K+A  LF+ M  RNA++W  MI
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMI 61

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             + R+G    A R F E+            F L  V                       
Sbjct: 62  DGFARSGDMVAARRTFNEV-----------PFELKNV----------------------- 87

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
                 V  + +++ Y   G+  +A  +   M + + F  S++ISGY   G + +AR +F
Sbjct: 88  ------VTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIF 141

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           DR    + V WNS+I GY  N    EAL  F KM+  G   D  T+  VLSAC+ L  L+
Sbjct: 142 DRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLD 201

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK VH   C  G+  +  V +AL+D Y+K                              
Sbjct: 202 VGKDVHKMICAKGMKLNEFVVNALVDMYAK------------------------------ 231

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG +  A+ IF  M NK+   WNSMI G + +G   EAL+ F  M + + + D+ +  S
Sbjct: 232 -CGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLS 290

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           V+SAC +   +E+G ++F+++   GL +       LVD   + G I+ D Y+L++
Sbjct: 291 VLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQ-DAYHLIK 344



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 168/356 (47%), Gaps = 67/356 (18%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
            ++  + R G+   A   F+E+P   +N  +W  MI+G+   G  E +  LF  MPQ+N 
Sbjct: 59  EMIDGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNF 118

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F W+ +ISG+ K G +K AR +F+ +P RN + WNS+I  Y +NGF  EA+  F ++ + 
Sbjct: 119 FVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQN- 177

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             E  + D   +  V+ ACA L+ L+ GK +H  I   G+  +                 
Sbjct: 178 --EGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLN----------------- 218

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                         +F ++AL+  YA CG +  AR +F+R T+ ++  WNSMISG+  + 
Sbjct: 219 --------------EFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHG 264

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +  EAL  F +M  +    D  T  SVLSAC   GF+E G ++     + G+       S
Sbjct: 265 KTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMERYGL-------S 317

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           A +  Y                          ++ +    GRI+DA H+ ++MP K
Sbjct: 318 ASIKHYG------------------------CLVDLLGRAGRIQDAYHLIKSMPMK 349



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 24/239 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L +C     + VGK +H     KG+ LN    + N L+ MY +CG+ T A L+F+ M  
Sbjct: 190 VLSACAQLSLLDVGKDVHKMICAKGMKLNEF--VVNALVDMYAKCGDLTGARLIFERMTN 247

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTARTL 125
           +N   WN+MI GF   G  +++L+ F  M + N    + ++  ++S     G ++    +
Sbjct: 248 KNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEI 307

Query: 126 FNDMPRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           F+ M R    A      C V    R G  ++A  L K +       ++ +  +    +GA
Sbjct: 308 FSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSM------PMKPNDTVWGAFLGA 361

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSS-----LVNLYGKCGDFNSANQVLNMMKE 235
           C      +  +Q+   +  +    DS  G+      L+N+Y   G +  A +V  +M +
Sbjct: 362 CRIHMDNDMVEQVVEDVCTSDSSVDS--GNDPHYALLLNIYAGSGSWEKAGRVSMVMAD 418



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y+ CG I D++ +F  MP +++++WN+MI G  +NG    A  LF          DK S
Sbjct: 1   MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLF----------DKMS 50

Query: 439 LASVISACANISSL-ELGEQVFARVTI--IGLDSDQIIS-TSLVDFYCKCG 485
             + +S    I      G+ V AR T   +  +   +++ T ++D Y   G
Sbjct: 51  TRNAVSWIEMIDGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKG 101


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 239/509 (46%), Gaps = 80/509 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           KQ H H ++ G+ +     A++L  +       +   A  +FDE+P+ N F+WN +I  +
Sbjct: 48  KQTHAHMIRTGMFSDPYS-ASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAY 106

Query: 83  MKLGHKEKSLQLF--------NVMPQKNDFSW---------------------------- 106
                   S+  F           P K  F +                            
Sbjct: 107 ASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGS 166

Query: 107 -----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                N LI  +   G+L +A  +F  +  ++ ++WNSMI+ +V+ G   +A+ LFK++ 
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           S   E ++     +  V+ ACA +  LE+G+++ S+I  N ++ +  L ++++++Y KCG
Sbjct: 227 S---EDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCG 283

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
               A ++ + M+E D+   + ++ GYA       AR V +       V WN++IS Y  
Sbjct: 284 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQ 343

Query: 282 NNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
           N +  EALL+FH+++ +  +  +  TL S LSAC+ +G LE G+ +H +  K G+  +  
Sbjct: 344 NGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFY 403

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V SAL+  YSK                               CG +E A+ +F ++  + 
Sbjct: 404 VTSALIHMYSK-------------------------------CGDLEKAREVFNSVEKRD 432

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           +  W++MI GL+ +G   EA+D+F  M + +++ +  +  +V  AC++   ++  E +F 
Sbjct: 433 VFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFY 492

Query: 461 RV-TIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ +  G+  +      +VD   + G+++
Sbjct: 493 KMESSYGIVPEDKHYACIVDVLGRSGYLE 521



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 144/293 (49%), Gaps = 34/293 (11%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NAM++ + K G  E + +LF+ M +K++ +W  ++ G+A + + + AR + N MP+++ +
Sbjct: 273 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIV 332

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           AWN++I  Y +NG   EA+ +F EL   L + ++ +   L + + ACA + ALE G+ IH
Sbjct: 333 AWNALISAYEQNGKPNEALLVFHELQ--LQKNIKLNQITLVSTLSACAQVGALELGRWIH 390

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           S+I  NG+          +N Y                        SALI  Y+ CG + 
Sbjct: 391 SYIKKNGIK---------MNFY----------------------VTSALIHMYSKCGDLE 419

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            AR VF+        +W++MI G   +   +EA+ +F+KM+   V  +  T  +V  ACS
Sbjct: 420 KAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACS 479

Query: 316 SLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             G ++  + + +      G++ +    + ++D   + G    A K    + +
Sbjct: 480 HTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPI 532



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 140/314 (44%), Gaps = 65/314 (20%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           ++I  C+ L  L   KQ H+H++  G+  D    S L                       
Sbjct: 36  SLIDRCSSLRQL---KQTHAHMIRTGMFSDPYSASKL----------------------- 69

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
             F ++AL S +A+   +  AR+VFD     +S  WN++I  Y S  +   ++  F  M 
Sbjct: 70  --FAIAAL-SSFAS---LEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMV 123

Query: 296 -RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
              +    +  T   ++ A + +  L  G+ +HG A K  V  DV VA            
Sbjct: 124 SSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVA------------ 171

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                              N++I  Y SCG ++ A  +F T+  K ++SWNSMI G  Q 
Sbjct: 172 -------------------NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 212

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           GSP +AL+LF  M   D++    ++  V+SACA I  LE G +V + +    ++ +  ++
Sbjct: 213 GSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLA 272

Query: 475 TSLVDFYCKCGFIK 488
            +++D Y KCG I+
Sbjct: 273 NAMLDMYTKCGSIE 286


>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
 gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
          Length = 734

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 232/521 (44%), Gaps = 106/521 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           ++ +   ARLLQ C +  ++  G++LH    + G  +S+  +   ++QMY +CG   DA 
Sbjct: 11  ESEVSRYARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSY-LRRCVVQMYAKCGCLADAK 69

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-QKNDFSW-------------- 106
             FDE+  +N F WN MI G+ + G   ++L+LF+ M    N F +              
Sbjct: 70  AAFDEIADKNDFVWNLMISGYARSGKNREALELFHKMDIPPNGFIFASALAACAGLGDLE 129

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N L++ +A+ G +     +F+ MPR+N ++WN+MI  +
Sbjct: 130 QGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAF 189

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V+  +  +A+ L+  +     ERL+ + F+ A+++ ACA L  L+ G  IH  I   GL 
Sbjct: 190 VQCDYPEQALELYHRMKR---ERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLGLQ 246

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D V+ ++L+N+Y KCG  + A +V + +   D F  +++I+GYA  G            
Sbjct: 247 RDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGF----------- 295

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                +EA   + +MRR+ V   ++T  ++LSACS+   LE GK
Sbjct: 296 --------------------GSEAFAFYDRMRRDCVSPTSATFVALLSACST---LEQGK 332

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H      G     +V +AL+  YS+ G   DA  LF++++  D +  + M+T +    
Sbjct: 333 HLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSH---- 388

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                      +Q G P +AL LF  M    +++   +  S + 
Sbjct: 389 ---------------------------AQFGDPGKALTLFRQMILEGMQLSLPTFCSALQ 421

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AC+      L + +   +   G+D    I   LV  Y KCG
Sbjct: 422 ACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCG 462



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 221/521 (42%), Gaps = 111/521 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  L +C     +  G+++H   L+   + S + + N L+ MY RCG+  + + +FD M
Sbjct: 115 FASALAACAGLGDLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAM 174

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
           PR+N  SWNAMI  F++  + E++L+L++ M ++    N F +                 
Sbjct: 175 PRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLQLGS 234

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LI+ ++K G +  A  +F+ +  R+   W SMI  Y + G
Sbjct: 235 SIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLG 294

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA   +  +  D      C +   AT +   +  + LE GK +H  +   G +  +V
Sbjct: 295 FGSEAFAFYDRMRRD------CVSPTSATFVALLSACSTLEQGKHLHEEVKAFGFESITV 348

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+ +Y +CG    A  +   M++ D                               
Sbjct: 349 VETALMFMYSRCGSLEDAEFLFAKMQQKD------------------------------- 377

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W++M++ +    +  +AL LF +M   G+     T  S L ACS        K +  
Sbjct: 378 YVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIR- 436

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                           L+D              +S +   D+I  + +++ YS CG +E+
Sbjct: 437 ---------------ELID--------------WSGIDKMDSIRAD-LVSAYSKCGDMEE 466

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ IF  M ++ +++W  MI G +Q G    AL+LF  M    +  D  + +SV+ AC+N
Sbjct: 467 ARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN 526

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIK 488
              LE G +V AR+    G      +   L++ Y +CG ++
Sbjct: 527 ---LEDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMR 564



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 135/248 (54%), Gaps = 35/248 (14%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           ++  YA CG + DA+  FD   D +  +WN MISGY  + ++ EAL LFHKM    +  +
Sbjct: 55  VVQMYAKCGCLADAKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKM---DIPPN 111

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
               AS L+AC+ LG LE G+++H       V++   +AS                    
Sbjct: 112 GFIFASALAACAGLGDLEQGREIHKR-----VLESRSIAS-------------------- 146

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                D ++ N+++T+Y+ CG + +   IF  MP K+L+SWN+MI    Q   P +AL+L
Sbjct: 147 -----DVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQALEL 201

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           +  M +  L  + F  AS+++ACA++ +L+LG  +  R+T +GL  D ++  +L++ Y K
Sbjct: 202 YHRMKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLGLQRDIVMENALINMYSK 261

Query: 484 CGFIKMDE 491
           CG   MDE
Sbjct: 262 CGC--MDE 267



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 215/477 (45%), Gaps = 104/477 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL +C +  ++ +G  +H      G L   + + N L+ MY +CG   +AL +F  +
Sbjct: 217 FASLLTACASLGNLQLGSSIHQRITSLG-LQRDIVMENALINMYSKCGCMDEALEVFSGL 275

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-----SWNMLISG---- 112
             R+ F+W +MI G+ +LG   ++   ++ M      P    F     + + L  G    
Sbjct: 276 ATRDVFTWTSMIAGYAQLGFGSEAFAFYDRMRRDCVSPTSATFVALLSACSTLEQGKHLH 335

Query: 113 ---------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                +++ G L+ A  LF  M +++ ++W++M+  + + G   
Sbjct: 336 EEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPG 395

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF+++   ++E +Q       + + AC+                   L  DS L  
Sbjct: 396 KALTLFRQM---ILEGMQLSLPTFCSALQACS-------------------LKRDSRLSK 433

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           ++  L     D++  +++        D   + L+S Y+ CG M +AR++FDR      + 
Sbjct: 434 TIRELI----DWSGIDKM--------DSIRADLVSAYSKCGDMEEARKIFDRMESRDVLT 481

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W  MI GY    +   AL LFH+M+  GV  D+ T +SVL ACS+   LE G++VH    
Sbjct: 482 WTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN---LEDGREVHAR-- 536

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
                   I+A       ++ G  SD              L N +I +Y+ CG + DA+ 
Sbjct: 537 --------ILA-------AQGGKMSD-------------FLGNGLINMYARCGSMRDARQ 568

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           IF +M   S ISW++++   +++G   + +D +  M    +  D  +L +++++C++
Sbjct: 569 IFESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSH 625



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 196/452 (43%), Gaps = 100/452 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C+T   +  GK LH      G  + T+ +   L+ MY RCG+  DA  LF +M ++
Sbjct: 321 LLSACST---LEQGKHLHEEVKAFGFESITV-VETALMFMYSRCGSLEDAEFLFAKMQQK 376

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM---------PQ----------KND-------- 103
           +  SW+AM+    + G   K+L LF  M         P           K D        
Sbjct: 377 DYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIR 436

Query: 104 --FSWNM----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
               W+           L+S ++K G+++ AR +F+ M  R+ + W  MI  Y + G ++
Sbjct: 437 ELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSK 496

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-NGLDFDSVLG 210
            A+ LF  +  + VE    D+   ++V+ AC++L   E G+++H+ IL   G      LG
Sbjct: 497 AALELFHRMKPEGVEP---DSVTFSSVLQACSNL---EDGREVHARILAAQGGKMSDFLG 550

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + L+N+Y                               A CG M DAR++F+    +S +
Sbjct: 551 NGLINMY-------------------------------ARCGSMRDARQIFESMDRSSRI 579

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+++++    + +  + +  +  M   GV+ D  TL ++L++CS  G  +        A
Sbjct: 580 SWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSHAGLTD-------EA 632

Query: 331 CK--VGVIDDVIVA------SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           C     +I D  +         ++D   + G   +A +L S +   D + LNTM+   ++
Sbjct: 633 CHYFTWIISDFELPHLDEHYQCMVDLLCRAGRLDEAEELISMIDRPDVVTLNTML---AA 689

Query: 383 CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ 413
           C   +D     RT    +S  S  +  V LSQ
Sbjct: 690 CKNQQDLHRGARTAAQMQSTESCAAPFVLLSQ 721


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 218/462 (47%), Gaps = 75/462 (16%)

Query: 13  QSCNTHHSIH---VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           + C++   I+   +GKQ+H   L+ G     L + N LL++Y +  +   A L+F EMP 
Sbjct: 220 EGCDSLSEIYGNELGKQIHCLALRLG-FGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPE 278

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTL 125
            N  SWN MI GF +    +KS++    M     Q N+ +   ++    ++G+++T R +
Sbjct: 279 VNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRI 338

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+ +P+ +  AWN+M+  Y       EA+  F+++     + L+ D   L+ ++ +CA L
Sbjct: 339 FSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQ---FQNLKPDKTTLSVILSSCARL 395

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             LE GKQIH  ++   +  +S +                               +S LI
Sbjct: 396 RFLEGGKQIHGVVIRTEISKNSHI-------------------------------VSGLI 424

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVL-ED 303
           + Y+ C KM  +  +FD   +   +  WNSMISG+  N  DT+AL+LF +M +  VL  +
Sbjct: 425 AVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPN 484

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            ++ A+VLS+CS L  L HG+Q HG   K G + D  V +AL D Y K            
Sbjct: 485 ETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCK------------ 532

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CG I+ A+  F  +  K+ + WN MI G   NG   EA+ L
Sbjct: 533 -------------------CGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGL 573

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +  M     + D  +  SV++AC++   +E G ++ + +  I
Sbjct: 574 YRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRI 615



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 220/466 (47%), Gaps = 89/466 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N +++ +++ G  + + ++F+ M  ++ +SWN  ++   K G+L  A  +F+ MP R+ +
Sbjct: 11  NRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVV 70

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI-----LATVIGACADLAALEY 190
           +WN+MI   VR GF  +A+ ++K        R+ CD F+     LA+V+ AC+ +    +
Sbjct: 71  SWNNMISVLVRKGFEEKALVVYK--------RMVCDGFLPSRFTLASVLSACSKVLDGVF 122

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF-NSANQVLNMMKEPDDFCLSALISGYA 249
           G + H   +  GLD +  +G++L+++Y KCG   +   +V   + +P++   +A+I G A
Sbjct: 123 GMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLA 182

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
                                            N+  EA+ +F  M   GV  D+  L++
Sbjct: 183 R-------------------------------ENKVLEAVQMFRLMCEKGVQVDSVCLSN 211

Query: 310 VLS------ACSSLGFL---EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           +LS       C SL  +   E GKQ+H  A ++G   D+ + ++LL+ Y+K    + A  
Sbjct: 212 ILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAEL 271

Query: 361 LFSELKVYDTILLNTM--------------------------------ITVYSSC---GR 385
           +F+E+   + +  N M                                I+V  +C   G 
Sbjct: 272 IFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGD 331

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +E  + IF ++P  S+ +WN+M+ G S      EA+  F  M   +L+ DK +L+ ++S+
Sbjct: 332 VETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSS 391

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           CA +  LE G+Q+   V    +  +  I + L+  Y +C  +++ E
Sbjct: 392 CARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISE 437



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 140/529 (26%), Positives = 217/529 (41%), Gaps = 120/529 (22%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N  L    + G+  +A  +FD MP R+  SWN MI   ++ G +EK+L ++  M      
Sbjct: 42  NAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFL 101

Query: 99  PQ---------------------------------KNDFSWNMLISGFAKAGEL-KTART 124
           P                                  KN F  N L+S +AK G +      
Sbjct: 102 PSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVR 161

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG---- 180
           +F  + + N +++ ++I    R     EAV++F+ +    V   Q D+  L+ ++     
Sbjct: 162 VFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGV---QVDSVCLSNILSISAP 218

Query: 181 --ACADLAAL---EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
              C  L+ +   E GKQIH   L  G   D  L +SL+ +Y K  D N A  +   M E
Sbjct: 219 REGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPE 278

Query: 236 PDDFCLSALISGYAN-----------------------------------CGKMNDARRV 260
            +    + +I G+                                      G +   RR+
Sbjct: 279 VNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRI 338

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F      S   WN+M+SGY +     EA+  F +M+   +  D +TL+ +LS+C+ L FL
Sbjct: 339 FSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFL 398

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E GKQ+HG   +  +  +  + S L                               I VY
Sbjct: 399 EGGKQIHGVVIRTEISKNSHIVSGL-------------------------------IAVY 427

Query: 381 SSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFS 438
           S C ++E ++ IF    N+  +  WNSMI G   N    +AL LF  M++   L  ++ S
Sbjct: 428 SECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETS 487

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            A+V+S+C+ + SL  G Q    V   G  SD  + T+L D YCKCG I
Sbjct: 488 FATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEI 536



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 217/513 (42%), Gaps = 94/513 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDE 66
           LA +L +C+       G + H   +K G L+  + + N LL MY +CG   D  + +F+ 
Sbjct: 107 LASVLSACSKVLDGVFGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFIVDYGVRVFES 165

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------- 101
           + + N  S+ A+I G  +     +++Q+F +M +K                         
Sbjct: 166 LSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSL 225

Query: 102 ----------------------NDFSWN-MLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
                                  D   N  L+  +AK  ++  A  +F +MP  N ++WN
Sbjct: 226 SEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWN 285

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
            MI  + +   + ++V     +        Q +     +V+GAC     +E G++I S I
Sbjct: 286 IMIVGFGQEYRSDKSVEFLTRMRDS---GFQPNEVTCISVLGACFRSGDVETGRRIFSSI 342

Query: 199 ----------LVNG----------------LDFD---------SVLGSSLVNLYGKCGDF 223
                     +++G                + F          SV+ SS   L    G  
Sbjct: 343 PQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGK 402

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISN 282
                V+      +   +S LI+ Y+ C KM  +  +FD   +   +  WNSMISG+  N
Sbjct: 403 QIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHN 462

Query: 283 NEDTEALLLFHKMRRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
             DT+AL+LF +M +  VL  + ++ A+VLS+CS L  L HG+Q HG   K G + D  V
Sbjct: 463 MLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFV 522

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM----P 397
            +AL D Y K G    A + F  +   +T++ N MI  Y   GR ++A  ++R M     
Sbjct: 523 ETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGE 582

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
               I++ S++   S +G     L++  +M ++
Sbjct: 583 KPDGITFVSVLTACSHSGLVETGLEILSSMQRI 615



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 41/292 (14%)

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G+  D+ L + L++LY +CGD + A +V + M   D +  +A ++     G + +A  VF
Sbjct: 2   GMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVF 61

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D   +   V WN+MIS  +    + +AL+++ +M  +G L    TLASVLSACS +    
Sbjct: 62  DGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGV 121

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G + HG A K G+  ++ V +ALL  Y+K                              
Sbjct: 122 FGMRCHGVAVKTGLDKNIFVGNALLSMYAK------------------------------ 151

Query: 382 SCGRIED-AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
            CG I D    +F ++   + +S+ ++I GL++    +EA+ +F  M +  +++D   L+
Sbjct: 152 -CGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLS 210

Query: 441 SVIS------ACANISSL---ELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           +++S       C ++S +   ELG+Q+      +G   D  ++ SL++ Y K
Sbjct: 211 NILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAK 262



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 151/350 (43%), Gaps = 74/350 (21%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSW 106
           R G+      +F  +P+ +  +WNAM+ G+    H E      + +Q  N+ P K   S 
Sbjct: 328 RSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSV 387

Query: 107 NM---------------------------------LISGFAKAGELKTARTLFNDMPRRN 133
            +                                 LI+ +++  +++ +  +F+D     
Sbjct: 388 ILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINEL 447

Query: 134 AIA-WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
            IA WNSMI  +  N    +A+ LF+ ++   V  L  +    ATV+ +C+ L +L +G+
Sbjct: 448 DIACWNSMISGFRHNMLDTKALILFRRMHQTAV--LCPNETSFATVLSSCSRLCSLLHGR 505

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q H  ++ +G   DS + ++L ++Y K                               CG
Sbjct: 506 QFHGLVVKSGYVSDSFVETALTDMYCK-------------------------------CG 534

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           +++ AR+ FD     ++V+WN MI GY  N    EA+ L+ KM  +G   D  T  SVL+
Sbjct: 535 EIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLT 594

Query: 313 ACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKL 361
           ACS  G +E G ++     ++ G+  ++     ++D   + G   DA KL
Sbjct: 595 ACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 644



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 78/155 (50%)

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  D  + + LLD Y + G    A K+F E+ V D    N  +T     G + +A  +
Sbjct: 1   MGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEV 60

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP + ++SWN+MI  L + G   +AL ++  M        +F+LASV+SAC+ +   
Sbjct: 61  FDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDG 120

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             G +        GLD +  +  +L+  Y KCGFI
Sbjct: 121 VFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFI 155



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L SC+   S+  G+Q H   +K G ++ +  +   L  MY +CG    A   FD +
Sbjct: 488 FATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSF-VETALTDMYCKCGEIDSARQFFDAV 546

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
            R+N   WN MI G+   G  ++++ L+  M     + +  ++  +++  + +G ++T  
Sbjct: 547 LRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGL 606

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRL 156
            + + M R + I      +  ++ C  R G   +A +L
Sbjct: 607 EILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 644


>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
 gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
          Length = 734

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/521 (26%), Positives = 231/521 (44%), Gaps = 106/521 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           ++ +   ARLLQ C +  ++  G++LH    + G  +S+  +   ++QMY +CG   DA 
Sbjct: 11  ESEVSRYARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSY-LRRCVVQMYAKCGCLADAK 69

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-QKNDFSW-------------- 106
             FDE+  +N F WN MI G+ + G   ++L+LF+ M    N F +              
Sbjct: 70  AAFDEIADKNDFVWNLMISGYARSGKNREALELFHKMDIPPNGFIFASALAACAGLGDLE 129

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N L++ +A+ G +     +F+ MPR+N ++WN+MI  +
Sbjct: 130 QGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAF 189

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V+  +  +A+ L+  +     ERL+ + F+ A+++ ACA L  LE G  IH  I   GL 
Sbjct: 190 VQCDYPEQALELYHRMKR---ERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLGLQ 246

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D V+ ++L+N+Y KCG  + A +V + +   D F  +++I+GYA  G            
Sbjct: 247 RDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGF----------- 295

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                +EA   +  MRR+ V   ++T  ++LSACS+   LE GK
Sbjct: 296 --------------------GSEAFAFYDGMRRDCVSPTSATFVALLSACST---LEQGK 332

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H      G     +V +AL+  YS+ G   DA  LF++++  D +  + M+T +    
Sbjct: 333 HLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSH---- 388

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                      +Q G P +AL LF  M    +++   +  S + 
Sbjct: 389 ---------------------------AQFGDPGKALTLFRQMILEGMQLSLPTFCSALQ 421

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AC+      L + +   +   G+D    I   LV  Y KCG
Sbjct: 422 ACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCG 462



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 221/521 (42%), Gaps = 111/521 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A  L +C     +  G+++H   L+   + S + + N L+ MY RCG+  + + +FD M
Sbjct: 115 FASALAACAGLGDLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAM 174

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
           PR+N  SWNAMI  F++  + E++L+L++ M ++    N F +                 
Sbjct: 175 PRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLELGS 234

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LI+ ++K G +  A  +F+ +  R+   W SMI  Y + G
Sbjct: 235 SIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLG 294

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA   +  +  D      C +   AT +   +  + LE GK +H  +   G +  +V
Sbjct: 295 FGSEAFAFYDGMRRD------CVSPTSATFVALLSACSTLEQGKHLHEEVKAFGFESITV 348

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+ +Y +CG    A  +   M++ D                               
Sbjct: 349 VETALMFMYSRCGSLEDAEFLFAKMQQKD------------------------------- 377

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W++M++ +    +  +AL LF +M   G+     T  S L ACS        K +  
Sbjct: 378 YVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIR- 436

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                           L+D              +S +   D+I  + +++ YS CG +E+
Sbjct: 437 ---------------ELID--------------WSGIDKMDSIRAD-LVSAYSKCGDMEE 466

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ IF  M ++ +++W  MI G +Q G    AL+LF  M    +  D  + +SV+ AC+N
Sbjct: 467 ARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN 526

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIK 488
              LE G +V AR+    G      +   L++ Y +CG ++
Sbjct: 527 ---LEDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMR 564



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 35/248 (14%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           ++  YA CG + DA+  FD   D +  +WN MISGY  + ++ EAL LFHKM    +  +
Sbjct: 55  VVQMYAKCGCLADAKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKM---DIPPN 111

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
               AS L+AC+ LG LE G+++H       V++   +AS                    
Sbjct: 112 GFIFASALAACAGLGDLEQGREIHKR-----VLESPSIAS-------------------- 146

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                D ++ N+++T+Y+ CG + +   IF  MP K+L+SWN+MI    Q   P +AL+L
Sbjct: 147 -----DVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQALEL 201

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           +  M +  L  + F  AS+++ACA++ +LELG  +  R+T +GL  D ++  +L++ Y K
Sbjct: 202 YHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLGLQRDIVMENALINMYSK 261

Query: 484 CGFIKMDE 491
           CG   MDE
Sbjct: 262 CGC--MDE 267



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 215/477 (45%), Gaps = 104/477 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL +C +  ++ +G  +H      G L   + + N L+ MY +CG   +AL +F  +
Sbjct: 217 FASLLTACASLGNLELGSSIHQRITSLG-LQRDIVMENALINMYSKCGCMDEALEVFSGL 275

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-----SWNMLISG---- 112
             R+ F+W +MI G+ +LG   ++   ++ M      P    F     + + L  G    
Sbjct: 276 ATRDVFTWTSMIAGYAQLGFGSEAFAFYDGMRRDCVSPTSATFVALLSACSTLEQGKHLH 335

Query: 113 ---------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                +++ G L+ A  LF  M +++ ++W++M+  + + G   
Sbjct: 336 EEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPG 395

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF+++   ++E +Q       + + AC+                   L  DS L  
Sbjct: 396 KALTLFRQM---ILEGMQLSLPTFCSALQACS-------------------LKRDSRLSK 433

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           ++  L     D++  +++        D   + L+S Y+ CG M +AR++FDR      + 
Sbjct: 434 TIRELI----DWSGIDKM--------DSIRADLVSAYSKCGDMEEARKIFDRMESRDVLT 481

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W  MI GY    +   AL LFH+M+  GV  D+ T +SVL ACS+   LE G++VH    
Sbjct: 482 WTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN---LEDGREVHAR-- 536

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
                   I+A       ++ G  SD              L N +I +Y+ CG + DA+ 
Sbjct: 537 --------ILA-------AQGGKMSD-------------FLGNGLINMYARCGSMRDARQ 568

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           IF +M   S ISW++++   +++G   + +D +  M    +  D  +L +++++C++
Sbjct: 569 IFESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSH 625



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 196/452 (43%), Gaps = 100/452 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C+T   +  GK LH      G  + T+ +   L+ MY RCG+  DA  LF +M ++
Sbjct: 321 LLSACST---LEQGKHLHEEVKAFGFESITV-VETALMFMYSRCGSLEDAEFLFAKMQQK 376

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM---------PQ----------KND-------- 103
           +  SW+AM+    + G   K+L LF  M         P           K D        
Sbjct: 377 DYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIR 436

Query: 104 --FSWNM----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
               W+           L+S ++K G+++ AR +F+ M  R+ + W  MI  Y + G ++
Sbjct: 437 ELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSK 496

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-NGLDFDSVLG 210
            A+ LF  +  + VE    D+   ++V+ AC++L   E G+++H+ IL   G      LG
Sbjct: 497 AALELFHRMKPEGVEP---DSVTFSSVLQACSNL---EDGREVHARILAAQGGKMSDFLG 550

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + L+N+Y                               A CG M DAR++F+    +S +
Sbjct: 551 NGLINMY-------------------------------ARCGSMRDARQIFESMDRSSRI 579

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+++++    + +  + +  +  M   GV+ D  TL ++L++CS  G  +        A
Sbjct: 580 SWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSHAGLTD-------EA 632

Query: 331 CK--VGVIDDVIVA------SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           C     +I D  +         ++D   + G   +A +L S +   D + LNTM+   ++
Sbjct: 633 CHYFTWIISDFELPHLDEHYQCMVDLLCRAGRLDEAEELISMIDRPDVVTLNTML---AA 689

Query: 383 CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ 413
           C   +D     RT    +S  S  +  V LSQ
Sbjct: 690 CKNQQDLHRGARTAAQMQSTESCAAPFVLLSQ 721


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 212/471 (45%), Gaps = 90/471 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++    K G  + + +LF+VMP +++ SWN +I  +A +G L  AR LF + P R+ I
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W+S+I  Y R G   EA+ LF E+     E  + + F   +V+  C+    LE GKQIH
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQ---YEGERPNQFTWGSVLRVCSMYVLLEKGKQIH 161

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +H +    D ++ + + LV++Y KC     A  +  +   PD                  
Sbjct: 162 AHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELA--PD------------------ 201

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                       + V+W +M++GY  N +  +A+  F  MR  G+  +  T  S+L+AC 
Sbjct: 202 ----------KRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACG 251

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           S+     G QVHG   + G   +V V SAL+D YSK G  S+A ++   ++V D +  N+
Sbjct: 252 SISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNS 311

Query: 376 MIT----------------------------------------VYSSCGRIEDAKHIFRT 395
           MI                                         +Y+  G  + A  +F  
Sbjct: 312 MIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEK 371

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC--------A 447
           M +K +ISW S++ G   NGS  EAL LFC M  + +  D+  +A+V+SA         A
Sbjct: 372 MTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYA 431

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-----FIKMDEYY 493
               +E   +VF  + I     D I  T+L+  Y + G     F  M+E Y
Sbjct: 432 KCGCIEDANKVFDSMEI----QDVITWTALIVGYAQNGRGRDYFQSMEEVY 478



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 45/326 (13%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  +   G Q+H   ++ G   + + + + L+ MY +CG+ ++A  + + M   
Sbjct: 246 ILTACGSISACGFGAQVHGCIVRSG-FGANVFVGSALVDMYSKCGDLSNARRMLETMEVD 304

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW-----NMLISGFAKAGELKT 121
           +  SWN+MI G ++ G  E++L LF +M  +    ++F++     N L+  +AK G    
Sbjct: 305 DPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDY 364

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A  +F  M  ++ I+W S++   V NG   EA+RLF E+    +  +  D  ++A V+  
Sbjct: 365 AFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMR---IMGIHPDQIVIAAVL-- 419

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
                                    S L +SLV++Y KCG    AN+V + M+  D    
Sbjct: 420 -------------------------SALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITW 454

Query: 242 SALISGYANCGKMNDARRVFDRT--TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
           +ALI GYA  G+  D  +  +           +  MI     + +  EA  L ++M    
Sbjct: 455 TALIVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQM---A 511

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQ 325
           V  DA+   ++L+AC   G +E G++
Sbjct: 512 VQPDATVWKALLAACRVHGNVELGER 537



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 177/443 (39%), Gaps = 67/443 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-R 69
           +L+ C+ +  +  GKQ+H H +K    +S   +   L+ MY +C    +A  LF+  P +
Sbjct: 144 VLRVCSMYVLLEKGKQIHAHAIKTQ-FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDK 202

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---------------------------- 101
           RN   W AM+ G+ + G   K+++ F  M  +                            
Sbjct: 203 RNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQV 262

Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                      N F  + L+  ++K G+L  AR +   M   + ++WNSMI   VR G  
Sbjct: 263 HGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLG 322

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVI-GACADLAALEYGKQIHSHILVNGLDFDSVL 209
            EA+ LF+ ++   +  ++ D F   +++  A  D+ A          +     D D + 
Sbjct: 323 EEALSLFRIMH---LRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVIS 379

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMK----EPDDFCLSA--------LISGYANCGKMNDA 257
            +SLV      G +  A ++   M+     PD   ++A        L+S YA CG + DA
Sbjct: 380 WTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDA 439

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSS 316
            +VFD       + W ++I GY  N    +    F  M    G+       A ++     
Sbjct: 440 NKVFDSMEIQDVITWTALIVGYAQNGRGRD---YFQSMEEVYGIKPGPEHYACMIDLLGR 496

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILL 373
            G L   K++     ++ V  D  V  ALL      G   +   A     EL+  + +  
Sbjct: 497 SGKLMEAKELLN---QMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPY 553

Query: 374 NTMITVYSSCGRIEDAKHIFRTM 396
             +  +YS+ G+ E+A    R M
Sbjct: 554 VLLSNLYSAAGKWEEAAKTRRLM 576



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%)

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C  L   E    +       G +     ++ +L   SK G   DA KLF  +   D    
Sbjct: 16  CHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW 75

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           NTMI  Y++ GR+ +A+ +F   P +S I+W+S+I G  + G  +EAL+LF  M     R
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            ++F+  SV+  C+    LE G+Q+ A       DS+  + T LVD Y KC  I   EY
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEY 194


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 218/462 (47%), Gaps = 75/462 (16%)

Query: 13  QSCNTHHSIH---VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           + C++   I+   +GKQ+H   L+ G     L + N LL++Y +  +   A L+F EMP 
Sbjct: 254 EGCDSLSEIYGNELGKQIHCLALRLG-FGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPE 312

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTL 125
            N  SWN MI GF +    +KS++    M     Q N+ +   ++    ++G+++T R +
Sbjct: 313 VNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRI 372

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F+ +P+ +  AWN+M+  Y       EA+  F+++     + L+ D   L+ ++ +CA L
Sbjct: 373 FSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQ---FQNLKPDKTTLSVILSSCARL 429

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             LE GKQIH  ++   +  +S +                               +S LI
Sbjct: 430 RFLEGGKQIHGVVIRTEISKNSHI-------------------------------VSGLI 458

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVL-ED 303
           + Y+ C KM  +  +FD   +   +  WNSMISG+  N  DT+AL+LF +M +  VL  +
Sbjct: 459 AVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPN 518

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            ++ A+VLS+CS L  L HG+Q HG   K G + D  V +AL D Y K            
Sbjct: 519 ETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCK------------ 566

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CG I+ A+  F  +  K+ + WN MI G   NG   EA+ L
Sbjct: 567 -------------------CGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGL 607

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +  M     + D  +  SV++AC++   +E G ++ + +  I
Sbjct: 608 YRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRI 649



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/535 (25%), Positives = 238/535 (44%), Gaps = 121/535 (22%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           YLA LL+          GK +H   ++ G+ + T  + NRLL +Y+ CG+   A  +FDE
Sbjct: 8   YLASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTY-LCNRLLDLYIECGDGDYARKVFDE 66

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
                                          M  ++ +SWN  ++   K G+L  A  +F
Sbjct: 67  -------------------------------MSVRDVYSWNAFLTFRCKVGDLGEACEVF 95

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI-----LATVIGA 181
           + MP R+ ++WN+MI   VR GF  +A+ ++K        R+ CD F+     LA+V+ A
Sbjct: 96  DGMPERDVVSWNNMISVLVRKGFEEKALVVYK--------RMVCDGFLPSRFTLASVLSA 147

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF-NSANQVLNMMKEPDDFC 240
           C+ +    +G + H   +  GLD +  +G++L+++Y KCG   +   +V   + +P++  
Sbjct: 148 CSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVS 207

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +A+I G A                                 N+  EA+ +F  M   GV
Sbjct: 208 YTAVIGGLAR-------------------------------ENKVLEAVQMFRLMCEKGV 236

Query: 301 LEDASTLASVLS------ACSSLGFL---EHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
             D+  L+++LS       C SL  +   E GKQ+H  A ++G   D+ + ++LL+ Y+K
Sbjct: 237 QVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAK 296

Query: 352 RGMPSDACKLFSELKVYDTILLNTM--------------------------------ITV 379
               + A  +F+E+   + +  N M                                I+V
Sbjct: 297 NKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISV 356

Query: 380 YSSC---GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
             +C   G +E  + IF ++P  S+ +WN+M+ G S      EA+  F  M   +L+ DK
Sbjct: 357 LGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDK 416

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            +L+ ++S+CA +  LE G+Q+   V    +  +  I + L+  Y +C  +++ E
Sbjct: 417 TTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISE 471



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 151/350 (43%), Gaps = 74/350 (21%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSW 106
           R G+      +F  +P+ +  +WNAM+ G+    H E      + +Q  N+ P K   S 
Sbjct: 362 RSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSV 421

Query: 107 NM---------------------------------LISGFAKAGELKTARTLFNDMPRRN 133
            +                                 LI+ +++  +++ +  +F+D     
Sbjct: 422 ILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINEL 481

Query: 134 AIA-WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
            IA WNSMI  +  N    +A+ LF+ ++   V  L  +    ATV+ +C+ L +L +G+
Sbjct: 482 DIACWNSMISGFRHNMLDTKALILFRRMHQTAV--LCPNETSFATVLSSCSRLCSLLHGR 539

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q H  ++ +G   DS + ++L ++Y K                               CG
Sbjct: 540 QFHGLVVKSGYVSDSFVETALTDMYCK-------------------------------CG 568

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           +++ AR+ FD     ++V+WN MI GY  N    EA+ L+ KM  +G   D  T  SVL+
Sbjct: 569 EIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLT 628

Query: 313 ACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKL 361
           ACS  G +E G ++     ++ G+  ++     ++D   + G   DA KL
Sbjct: 629 ACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 678



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L SC+   S+  G+Q H   +K G ++ +  +   L  MY +CG    A   FD +
Sbjct: 522 FATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSF-VETALTDMYCKCGEIDSARQFFDAV 580

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
            R+N   WN MI G+   G  ++++ L+  M     + +  ++  +++  + +G ++T  
Sbjct: 581 LRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGL 640

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRL 156
            + + M R + I      +  ++ C  R G   +A +L
Sbjct: 641 EILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 678


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 144/527 (27%), Positives = 228/527 (43%), Gaps = 112/527 (21%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   L+++    + ++ GKQ+H H LK G L     + N LL MY +CG   +A+ +F+ 
Sbjct: 41  FFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIF-VKNSLLGMYWKCGAGGNAVDMFER 99

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------- 101
           M  R+  SWN MI GF + G   KSL +F  M ++                         
Sbjct: 100 MEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLT 159

Query: 102 ----------------NDFSWNMLISGFAKAGELKTARTLF-----NDMPRRNAIAWNSM 140
                           ++F  + LI  + K G++K A  +F     N++  RN   WN M
Sbjct: 160 HGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVM 219

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  YV N     A+ LF E+   L   +  D+  +  V+  C+ L  L  GKQIH  IL 
Sbjct: 220 ILGYVSNECLSLALELFVEM---LELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILG 276

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            GLD D  +G++L+ +Y KCGD  ++ Q                               +
Sbjct: 277 LGLDDDVRVGTALMEMYFKCGDPETSLQ-------------------------------I 305

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F R+ + + VMW S++     N    EAL  F +   +    D   L + L ACS L   
Sbjct: 306 FKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLK 365

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G  +HG A K+G   DV V  AL+D Y K                             
Sbjct: 366 PRGMAIHGFAIKMGFDSDVFVGGALVDFYGK----------------------------- 396

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG +E A+ +F  +  + L+SWN++I G +QN    EAL  F +M    ++ +  ++A
Sbjct: 397 --CGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMA 454

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            ++S C ++S + L ++V   +     +++ +++ SL+  Y KCG I
Sbjct: 455 CILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDI 501



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 203/495 (41%), Gaps = 116/495 (23%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-----E 66
           L SC +   +  G ++H   +KKG+ +S   + + L++MYM+CG+  +A  +F+     E
Sbjct: 149 LSSCASIKCLTHGLEIHGFLVKKGV-DSDEFLVSALIEMYMKCGDIKNAENVFERIRDNE 207

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------PQKNDFSWN 107
           +  RN   WN MI G++       +L+LF  M                    Q  D +  
Sbjct: 208 LVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVG 267

Query: 108 MLISG--------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
             I G                    + K G+ +T+  +F      N + W S++    +N
Sbjct: 268 KQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQN 327

Query: 148 GFAREAVRLFKELNSDLVERLQC---DAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           G+  EA+  F E        L C   D  IL   + AC+ L+    G  IH   +  G D
Sbjct: 328 GYPNEALEFFSEF------MLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFD 381

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D  +G +LV+ YGK                               CG M  A++VF   
Sbjct: 382 SDVFVGGALVDFYGK-------------------------------CGDMEYAQQVFYGL 410

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           +    V WN++ISG+  N    EAL  F  M+   +  +  T+A +LS C+ L  +   K
Sbjct: 411 STRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCK 470

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +VH                               C L       + ++ N++I+ Y+ CG
Sbjct: 471 EVH-------------------------------CYLLRHWFETNALVNNSLISAYAKCG 499

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            I  ++ +F  +P ++ ++WNS+++G   +G   E    F  M + +++ D  +  S++S
Sbjct: 500 DIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLS 559

Query: 445 ACANISSLELGEQVF 459
           +C++   ++ G + F
Sbjct: 560 SCSHSGKVDAGWKYF 574



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 33/193 (17%)

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           +E+      ++ A   L  +  GKQ+HGH  K G + D+ V ++LL  Y K         
Sbjct: 36  VEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWK--------- 86

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 CG   +A  +F  M  +  +SWN+MI G  Q+G  +++
Sbjct: 87  ----------------------CGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKS 124

Query: 421 LDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           L +F  M K       ++ +  + +S+CA+I  L  G ++   +   G+DSD+ + ++L+
Sbjct: 125 LVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALI 184

Query: 479 DFYCKCGFIKMDE 491
           + Y KCG IK  E
Sbjct: 185 EMYMKCGDIKNAE 197


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 245/531 (46%), Gaps = 89/531 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
            +  C T   +   K +H   L  GIL  TL + + L+  Y+  G  + A+ L    P  
Sbjct: 34  FIHKCKTISQV---KLIHQKLLSFGIL--TLNLTSHLISTYISLGCLSHAVSLLRRFPPS 88

Query: 71  NC--FSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
           +   + WN++I  +   G   K L  F +M                              
Sbjct: 89  DAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDS 148

Query: 101 -----------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                       N F  N L++ +++ G L  AR +F++MP  + ++WNS+I  Y + G 
Sbjct: 149 SHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGK 208

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            + A+ +F ++ ++   R   D   L  V+  CA +     GKQ H   + + +  +  +
Sbjct: 209 PKMALEMFSKMTNEFGFRP--DDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFV 266

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS- 268
           G+ LV++Y K G  + AN V + M   D    +A+++GY+  G+  DA R+F++  +   
Sbjct: 267 GNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKI 326

Query: 269 ---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V W++ ISGY       EAL +  +M  +G+  +  TL SVLS C+S+G L HGK+
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H +A K                      P D   L       + +++N +I +Y+ C +
Sbjct: 387 IHCYAIKY---------------------PMD---LRKNGHGDENMVINQLIDMYAKCKK 422

Query: 386 IEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLAS 441
           ++ A+ +F ++  K   +++W  MI G SQ+G   +AL+L   M + D   R + F+++ 
Sbjct: 423 VDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISC 482

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQ-----IISTSLVDFYCKCGFI 487
            + ACA++++L +G+Q+ A      L + Q      +S  L+D Y KCG I
Sbjct: 483 ALVACASLAALSIGKQIHA----YALRNQQNAVPLFVSNCLIDMYAKCGDI 529



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 238/552 (43%), Gaps = 132/552 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C    S+  G   H      G +++   + N L+ MY RCG+ +DA  +FDEMP  
Sbjct: 133 VFKACGEISSVRCGDSSHALSRVTGFMSNVF-VGNALVAMYSRCGSLSDARKVFDEMPVW 191

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMPQ------------- 100
           +  SWN++IE + KLG  + +L++F                 NV+P              
Sbjct: 192 DVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQF 251

Query: 101 ----------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                     +N F  N L+  +AK G +  A T+F++MP ++ ++WN+M+  Y + G  
Sbjct: 252 HGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRF 311

Query: 151 REAVRLFKELNSD--------------------------------LVERLQCDAFILATV 178
            +AVRLF+++  +                                L   ++ +   L +V
Sbjct: 312 EDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +  CA + AL +GK+IH + +   +D          N +G        N V+N       
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKYPMDLRK-------NGHG------DENMVINQ------ 412

Query: 239 FCLSALISGYANCGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                LI  YA C K++ AR +FD  +  +   V W  MI GY  + +  +AL L  +M 
Sbjct: 413 -----LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 467

Query: 297 RNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
                   +A T++  L AC+SL  L  GKQ+H +A +                      
Sbjct: 468 EEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALR---------------------N 506

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             +A  LF         + N +I +Y+ CG I DA+ +F  M  K+ ++W S++ G   +
Sbjct: 507 QQNAVPLF---------VSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMH 557

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQII 473
           G   EAL +F  M ++  ++D  +L  V+ AC++   ++ G + F R+ T  G+      
Sbjct: 558 GYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEH 617

Query: 474 STSLVDFYCKCG 485
              LVD   + G
Sbjct: 618 YACLVDLLGRAG 629



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 165/385 (42%), Gaps = 90/385 (23%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           +N F  N +++ + K G  +++  +F+ MP K+  SWN +++G+++ G  + A  LF  M
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQM 321

Query: 130 P----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
                + + + W++ I  Y + G   EA+ + +++   L   ++ +   L +V+  CA +
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM---LSSGIKPNEVTLISVLSGCASV 378

Query: 186 AALEYGKQIHSHILVNGLDF-------DSVLGSSLVNLYGKC------------------ 220
            AL +GK+IH + +   +D        ++++ + L+++Y KC                  
Sbjct: 379 GALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKER 438

Query: 221 ---------------GDFNSANQVLNMMKE------PDDFCLSA---------------- 243
                          GD N A ++L+ M E      P+ F +S                 
Sbjct: 439 DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQ 498

Query: 244 --------------------LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                               LI  YA CG + DAR VFD   + + V W S+++GY  + 
Sbjct: 499 IHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHG 558

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVA 342
              EAL +F +MRR G   D  TL  VL ACS  G ++ G +         GV       
Sbjct: 559 YGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHY 618

Query: 343 SALLDTYSKRGMPSDACKLFSELKV 367
           + L+D   + G  + A +L  E+ +
Sbjct: 619 ACLVDLLGRAGRLNAALRLIEEMPM 643



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 36/253 (14%)

Query: 242 SALISGYANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
           S LIS Y + G ++ A  +  R   +D     WNS+I  Y +N    + L  F  M    
Sbjct: 63  SHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLS 122

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              D  T   V  AC  +  +  G   H  +   G + +V V +AL              
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNAL-------------- 168

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                            + +YS CG + DA+ +F  MP   ++SWNS+I   ++ G P  
Sbjct: 169 -----------------VAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 420 ALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           AL++F  M N+   R D  +L +V+  CA++ +  LG+Q         +  +  +   LV
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 479 DFYCKCGFIKMDE 491
           D Y K G   MDE
Sbjct: 272 DMYAKFGM--MDE 282



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 107/235 (45%), Gaps = 22/235 (9%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C +  ++ +GKQ+H + L+       L ++N L+ MY +CG+  DA L+FD M  +N
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKN 543

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-----MLISGFAKAGELKTARTLF 126
             +W +++ G+   G+ E++L +F  M ++  F  +     +++   + +G +      F
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFEEM-RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M     ++     +  ++    R G    A+RL +E+       ++    +   ++  
Sbjct: 603 NRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMP------MEPPPVVWVALLSC 656

Query: 182 CADLAALEYGKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           C     +E G+     I  L +  D    L   L N+Y   G +    ++ ++M+
Sbjct: 657 CRIHGKVELGEYAAKKITELASNNDGSYTL---LSNMYANAGRWKDVTRIRSLMR 708


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 213/486 (43%), Gaps = 105/486 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           + + L+ MY + G   +A  +FD MP RN  SW  MI G+       ++L LF +M ++ 
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREE 204

Query: 102 ---NDFSW-----------------------------------NMLISGFAKAGELKTAR 123
              N+F +                                   N L++ +AK G L  A 
Sbjct: 205 EGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDAL 264

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
             F     +N+I W++MI    ++G + +A++LF  ++   +  ++   F    VI AC+
Sbjct: 265 QTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMH---LSGIRPSEFTFVGVINACS 321

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           DL A   GKQ+H ++L   L F+S +                             + ++A
Sbjct: 322 DLGAAWEGKQVHDYLL--KLGFESQI-----------------------------YVMTA 350

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+  YA C  + DAR+ FD   +   V+W SMI GY+ N E+ +AL L+ +M   G+L +
Sbjct: 351 LVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPN 410

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T+ASVL ACSSL  LE GKQ+H    K G   +V + SAL   Y+K G   D   +F 
Sbjct: 411 ELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFR 470

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +   D I  N MI+                               GLSQNG   EAL+L
Sbjct: 471 RMPARDVISWNAMIS-------------------------------GLSQNGCGKEALEL 499

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYC 482
           F  M     + D  +  +++SAC+++  +E G   F  +    G+D        +VD   
Sbjct: 500 FEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILS 559

Query: 483 KCGFIK 488
           + G +K
Sbjct: 560 RAGKLK 565



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 224/524 (42%), Gaps = 111/524 (21%)

Query: 7   YLARLLQSCNTHH-SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           +   LLQ   TH+ S+  GK LH   +K    +S + IAN L+ +Y +C    +A  +F+
Sbjct: 9   FFTALLQ--YTHNRSLQKGKALHAQIIKSS--SSCVYIANSLVNLYAKCQRLREAKFVFE 64

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKS--LQLFNVMPQKND-------------------- 103
            +  ++  SWN +I G+ + G    S  ++LF  M  +N                     
Sbjct: 65  RIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDA 124

Query: 104 -------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                              F  + L++ + KAG    AR +F+ MP RN+++W +MI  Y
Sbjct: 125 AGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGY 184

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
                A EA+ LF+ +     E    + F+  +V+ A      +  GKQIH   + NGL 
Sbjct: 185 ASQKLAAEALGLFRLMRR---EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLL 241

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
               +G++LV +Y KCG  + A Q      + +    SA+I+G A  G            
Sbjct: 242 SIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSG------------ 289

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                              +  +AL LF  M  +G+     T   V++ACS LG    GK
Sbjct: 290 -------------------DSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGK 330

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           QVH +  K+G    + V +AL+D Y+K     DA K F  L+  D +L  +MI       
Sbjct: 331 QVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIG------ 384

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                    G  QNG   +AL L+  M    +  ++ ++ASV+ 
Sbjct: 385 -------------------------GYVQNGENEDALSLYGRMEMEGILPNELTMASVLK 419

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           AC+++++LE G+Q+ AR    G   +  I ++L   Y KCG +K
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLK 463



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L++C++  ++  GKQ+H   +K G     +PI + L  MY +CG   D  L+F  M
Sbjct: 414 MASVLKACSSLAALEQGKQIHARTVKYG-FGLEVPIGSALSTMYAKCGCLKDGTLVFRRM 472

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           P R+  SWNAMI G  + G  +++L+LF  M
Sbjct: 473 PARDVISWNAMISGLSQNGCGKEALELFEEM 503


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 239/508 (47%), Gaps = 79/508 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           KQ H H ++ G  +     A++L  M       +   A  +FDE+P+ N F+WN +I  +
Sbjct: 47  KQTHGHMIRTGTFSDPYS-ASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAY 105

Query: 83  MKLGHKEKSLQLF-------NVMPQKNDFSW----------------------------- 106
                   S+  F          P K  F +                             
Sbjct: 106 ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSD 165

Query: 107 ----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
               N LI  +   G+L +A  +F  +  ++ ++WNSMI+ +V+ G   +A+ LFK++ S
Sbjct: 166 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 225

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
              E ++     +  V+ ACA +  LE+G+Q+ S+I  N ++ +  L ++++++Y KCG 
Sbjct: 226 ---EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A ++ + M+E D+   + ++ GYA       AR V +       V WN++IS Y  N
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342

Query: 283 NEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
            +  EAL++FH+++    ++ +  TL S LSAC+ +G LE G+ +H +  K G+  +  V
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHV 402

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            SAL+  YSK                               CG +E ++ +F ++  + +
Sbjct: 403 TSALIHMYSK-------------------------------CGDLEKSREVFNSVEKRDV 431

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
             W++MI GL+ +G   EA+D+F  M + +++ +  +  +V  AC++   ++  E +F +
Sbjct: 432 FVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQ 491

Query: 462 V-TIIGLDSDQIISTSLVDFYCKCGFIK 488
           + +  G+  ++     +VD   + G+++
Sbjct: 492 MESNYGIVPEEKHYACIVDVLGRSGYLE 519



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 162/360 (45%), Gaps = 70/360 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G+Q+   ++++  +N  L +AN +L MY +CG+  DA  LFD M  +
Sbjct: 238 VLSACAKIRNLEFGRQV-CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 296

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  +W  M++G+      E + ++ N MPQK+  +WN LIS                   
Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISA------------------ 338

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                        Y +NG   EA+ +F EL   L + ++ +   L + + ACA + ALE 
Sbjct: 339 -------------YEQNGKPNEALIVFHEL--QLQKNMKLNQITLVSTLSACAQVGALEL 383

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA- 249
           G+ IHS+I  +G+  +  + S+L+++Y KCGD   + +V N +++ D F  SA+I G A 
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443

Query: 250 -NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
             CG                                  EA+ +F+KM+   V  +  T  
Sbjct: 444 HGCG---------------------------------NEAVDMFYKMQEANVKPNGVTFT 470

Query: 309 SVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +V  ACS  G ++  + + H      G++ +    + ++D   + G    A K    + +
Sbjct: 471 NVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPI 530



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 64/313 (20%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           ++I  C  L  L   KQ H H++  G   D    S L                       
Sbjct: 35  SLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKL----------------------- 68

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
             F ++AL S +A+   +  AR+VFD     +S  WN++I  Y S  +   ++  F  M 
Sbjct: 69  --FAMAAL-SSFAS---LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMV 122

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
             +    +  T   ++ A + +  L  G+ +HG A K  V  DV VA             
Sbjct: 123 SESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVA------------- 169

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N++I  Y SCG ++ A  +F T+  K ++SWNSMI G  Q G
Sbjct: 170 ------------------NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKG 211

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
           SP +AL+LF  M   D++    ++  V+SACA I +LE G QV + +    ++ +  ++ 
Sbjct: 212 SPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLAN 271

Query: 476 SLVDFYCKCGFIK 488
           +++D Y KCG I+
Sbjct: 272 AMLDMYTKCGSIE 284


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 190/389 (48%), Gaps = 65/389 (16%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+  +A    +++AR +F+  P+R+ ++W +MI  YV+ GFARE V LF E+     E
Sbjct: 164 NTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCG---E 220

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            LQ D   L  V+ +CA L  L  G+++H +I+ N          S VNL          
Sbjct: 221 NLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN----------SNVNL---------- 260

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                     D F  +AL+  Y  CG  N AR+VF      + V WNSMISG     +  
Sbjct: 261 ----------DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFK 310

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           E+L +F KM+R GV  D  TL +VL++C++LG LE GK VH +  +  +  D  + +AL+
Sbjct: 311 ESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALV 370

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y+K                               CG I+ A  +F+ M  K + S+ +
Sbjct: 371 DMYAK-------------------------------CGSIDQACWVFQAMNRKDVYSYTA 399

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TII 465
           MIVGL+ +G   +ALDLF  M K+ +  D+ +   V++AC+++  +E G + F  + TI 
Sbjct: 400 MIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIY 459

Query: 466 GLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            L         +VD   + G I   E ++
Sbjct: 460 NLRPQLEHYGCMVDLLGRAGLINEAEEFI 488



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 207/473 (43%), Gaps = 123/473 (26%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  G+++H   +K G L S + ++N L++MY  C     A  +FD  P+R
Sbjct: 131 VLKACAESRAVREGEEVHGQAIKMG-LASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQR 189

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------------- 102
           +  SW  MI+G++K+G   + + LF  M  +N                            
Sbjct: 190 DLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLH 249

Query: 103 ------------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                        F  N L+  + K G+   AR +F +MP +N ++WNSMI    + G  
Sbjct: 250 RYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQF 309

Query: 151 REAVRLFKELNSDLVERL--QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +E++ +F+++     +RL  + D   L  V+ +CA+L  LE GK +H+++  N +  D  
Sbjct: 310 KESLYMFRKM-----QRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGF 364

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV++Y KCG  + A  V   M   D +  +A+I G A  G                
Sbjct: 365 IGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHG---------------- 408

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK---- 324
                          +  +AL LF +M + G+  D  T   VL+ACS +G +E G+    
Sbjct: 409 ---------------QGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFE 453

Query: 325 ----------QVHGHACKVGVIDDVIVASALLDTYSK--RGMPSD-----------ACKL 361
                     Q+  + C V    D++  + L++   +  R MP +           ACK+
Sbjct: 454 DMSTIYNLRPQLEHYGCMV----DLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKI 509

Query: 362 FSELKVYDTILLNT-------------MITVYSSCGRIEDAKHIFRTMPNKSL 401
             ++++ ++++                M  +YSS  R  DA  + +TM  ++L
Sbjct: 510 HGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNL 562



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 170/370 (45%), Gaps = 67/370 (18%)

Query: 120 KTARTLFNDMPRRNAIAWNSMIH-CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           + A +L   +   N   +N++I      N  + E + ++K++   L + +  D + +  V
Sbjct: 75  RYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQM---LSKGIVPDNYTIPFV 131

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + ACA+  A+  G+++H   +  GL  D  + ++L+ +Y                     
Sbjct: 132 LKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMY--------------------- 170

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                     A C  +  AR+VFD +     V W +MI GY+      E + LF +M   
Sbjct: 171 ----------AVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGE 220

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSD 357
            +  D  TL  VLS+C+ LG L  G+++H +  +   ++ DV V +AL+D Y K G  + 
Sbjct: 221 NLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANF 280

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           A K+F E+ V + +  N+MI+                               GL+Q G  
Sbjct: 281 ARKVFQEMPVKNVVSWNSMIS-------------------------------GLAQKGQF 309

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            E+L +F  M +L ++ D  +L +V+++CAN+  LELG+ V A +    + +D  I  +L
Sbjct: 310 KESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNAL 369

Query: 478 VDFYCKCGFI 487
           VD Y KCG I
Sbjct: 370 VDMYAKCGSI 379



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 54/350 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L SC     + +G++LH + ++   +N  + + N L+ MY++CG+   A  +F EM
Sbjct: 229 LVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEM 288

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
           P +N  SWN+MI G  + G  ++SL +F  M                             
Sbjct: 289 PVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGK 348

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      + + F  N L+  +AK G +  A  +F  M R++  ++ +MI     +G
Sbjct: 349 WVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHG 408

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI-LVNGLDFDS 207
              +A+ LF E+    +E    D      V+ AC+ +  +E G++    +  +  L    
Sbjct: 409 QGGKALDLFSEMPKMGIEP---DEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQL 465

Query: 208 VLGSSLVNLYGKCGDFNSANQ-VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT-- 264
                +V+L G+ G  N A + + NM  EPD F L AL+      GK+     V  +   
Sbjct: 466 EHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEK 525

Query: 265 ----TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                D + V+ +++   Y S N   +AL L   M+    LE     +S+
Sbjct: 526 IEPRKDGAYVLMSNI---YSSANRWRDALKLRKTMKERN-LEKTPGCSSI 571


>gi|168004577|ref|XP_001754988.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694092|gb|EDQ80442.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 437

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 180/382 (47%), Gaps = 68/382 (17%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N L++ + K G +  AR +F++M  R+   W  M+  Y R G   EA R+++++   
Sbjct: 11  FVLNALLNMYMKCGSITDARQVFDNMRERDMFTWTMMLTGYARLGHLEEAYRVYEQM--- 67

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L ERL  D     T++  CA L +LE GK++H  ++  G+  D +LG++L+++Y K    
Sbjct: 68  LEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAK---- 123

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      CG +     +F    D   V WN +I+G   N 
Sbjct: 124 ---------------------------CGNIRQGHTMFTEMKDRDVVTWNIIIAGAARNG 156

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EA  LF  MR  G+  D  T   VL+ CSSL   E G+ +H +  + G+  D+ V +
Sbjct: 157 YFDEAFELFEAMREAGLKPDKVTYVCVLNVCSSL---EQGRILHSYIIEAGLELDLWVGT 213

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           ALL+                               +YS+C  +EDA  IF  +P ++L++
Sbjct: 214 ALLN-------------------------------MYSNCRSLEDALQIFEKLPERNLVT 242

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W S+I   +Q G P +A   +  M K  +  DKF+  +V+  CA +  LE G+QV   + 
Sbjct: 243 WTSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMGDLEKGKQVHDHMV 302

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
             G+ +DQI+ ++L+D Y KCG
Sbjct: 303 KSGIATDQILDSTLIDMYAKCG 324



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 173/384 (45%), Gaps = 71/384 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C +  S+  GK++H   +K GI +S   + N L+ MY +CGN      +F EM  R
Sbjct: 82  ILSVCASLRSLEKGKKVHCDMIKAGI-HSDRILGNTLIDMYAKCGNIRQGHTMFTEMKDR 140

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------------- 105
           +  +WN +I G  + G+ +++ +LF  M      P K  +                    
Sbjct: 141 DVVTWNIIIAGAARNGYFDEAFELFEAMREAGLKPDKVTYVCVLNVCSSLEQGRILHSYI 200

Query: 106 ---------W--NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                    W    L++ ++    L+ A  +F  +P RN + W S+I  Y + G   +A 
Sbjct: 201 IEAGLELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNLVTWTSVIAAYAQAGIPEKAW 260

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
             ++++   L E +  D F   TV+  CA +  LE GKQ+H H++ +G+  D +L S+L+
Sbjct: 261 IFYEKM---LKEGIVADKFAYTTVLHVCATMGDLEKGKQVHDHMVKSGIATDQILDSTLI 317

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           ++                               YA CG+ + A ++ +   +   V + +
Sbjct: 318 DM-------------------------------YAKCGRTDIAHQLLEIMDERDVVSYTA 346

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +I G++      EAL  F  M+R+GVL +  T   VL AC+ LG L  G+++H    K G
Sbjct: 347 LIVGHVRQGRFQEALQTFSSMQRDGVLPNTVTFVGVLKACTGLGSLVEGRRIHASIIKAG 406

Query: 335 VIDDVIVASALLDTYSKRGMPSDA 358
           +  D  +  AL D Y+K    +DA
Sbjct: 407 LAQDSSLKYALADMYAKCSSWTDA 430



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 43/253 (16%)

Query: 16  NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           N   S+  G+ LH + ++ G L   L +   LL MY  C +  DAL +F+++P RN  +W
Sbjct: 185 NVCSSLEQGRILHSYIIEAG-LELDLWVGTALLNMYSNCRSLEDALQIFEKLPERNLVTW 243

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW------------------------- 106
            ++I  + + G  EK+   +  M ++    + F++                         
Sbjct: 244 TSVIAAYAQAGIPEKAWIFYEKMLKEGIVADKFAYTTVLHVCATMGDLEKGKQVHDHMVK 303

Query: 107 ----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL 156
                     + LI  +AK G    A  L   M  R+ +++ ++I  +VR G  +EA++ 
Sbjct: 304 SGIATDQILDSTLIDMYAKCGRTDIAHQLLEIMDERDVVSYTALIVGHVRQGRFQEALQT 363

Query: 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216
           F  +  D V     +      V+ AC  L +L  G++IH+ I+  GL  DS L  +L ++
Sbjct: 364 FSSMQRDGV---LPNTVTFVGVLKACTGLGSLVEGRRIHASIIKAGLAQDSSLKYALADM 420

Query: 217 YGKCGDFNSANQV 229
           Y KC  +  A +V
Sbjct: 421 YAKCSSWTDAQEV 433



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 71/122 (58%)

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
           V  T +LN ++ +Y  CG I DA+ +F  M  + + +W  M+ G ++ G   EA  ++  
Sbjct: 7   VPSTFVLNALLNMYMKCGSITDARQVFDNMRERDMFTWTMMLTGYARLGHLEEAYRVYEQ 66

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M +  L +D  +  +++S CA++ SLE G++V   +   G+ SD+I+  +L+D Y KCG 
Sbjct: 67  MLEERLPLDGVTFTTILSVCASLRSLEKGKKVHCDMIKAGIHSDRILGNTLIDMYAKCGN 126

Query: 487 IK 488
           I+
Sbjct: 127 IR 128


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/508 (25%), Positives = 242/508 (47%), Gaps = 83/508 (16%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           HV  Q+ LH L   +L        +L+   ++  +   A  LFD++P+ N F +N +I+G
Sbjct: 54  HVHAQIILHGLATQVLT-----LGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKG 108

Query: 82  FMKLGHKEKSLQLF------NVMPQKNDFS--------------W--------------- 106
           +       KSL L+       ++P  N F+              W               
Sbjct: 109 YSNSSDPIKSLLLYRRMVCDGILP--NQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMG 166

Query: 107 ------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                 N +++ +   G + +AR +F+D+  R  ++WNSMI+ Y + G + EAV +F+E+
Sbjct: 167 SHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREM 226

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
                  L+ D F L  ++         + G+ +H H++V G++ DS++ ++L+++Y KC
Sbjct: 227 QE---VGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKC 283

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G+   A  V + M + D    + +I+ YAN G ++ A   F++    + V WNS+I  ++
Sbjct: 284 GNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHV 343

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
                 EA+ LF++M  +GV+ + +TL ++LS+CS +G L  GKQ H +     + D+ I
Sbjct: 344 QEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSY-----IFDNNI 398

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
             SA                           L N +I +Y+ CG ++ A  +F  MP K+
Sbjct: 399 TLSA--------------------------TLCNAIIDMYAKCGALQTAMDVFFGMPEKN 432

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            +SWN +I  L+ +G   EA+++F  M    +  D+ +   ++SAC++   ++ G+  F 
Sbjct: 433 AVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFE 492

Query: 461 RVTI-IGLDSDQIISTSLVDFYCKCGFI 487
            + +  G+  D      +VD   + G +
Sbjct: 493 IMNLTFGISPDVEHYACMVDLLGRRGLL 520



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 189/389 (48%), Gaps = 36/389 (9%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+S   +  +L+ A  LF+ +P+ N   +N +I  Y  +    +++ L++ +  D +   
Sbjct: 74  LVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPN 133

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           Q   F +  V+ ACA  +    G  +H+     G+   + + ++++N+Y           
Sbjct: 134 Q---FTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIY----------- 179

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                 CG +  ARRVFD  ++ + V WNSMI+GY       EA
Sbjct: 180 --------------------VACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEA 219

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           +L+F +M+  G+  D  TL  +LS  +  G  + G+ VH H    G+  D IV +AL+D 
Sbjct: 220 VLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDM 279

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K G    A  +F ++   D +    MI  Y++ G I+ A   F  MP K+++SWNS+I
Sbjct: 280 YAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSII 339

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
               Q G   EA+DLF  M    +  +  +L +++S+C+++  L LG+Q  + +    + 
Sbjct: 340 WCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNIT 399

Query: 469 SDQIISTSLVDFYCKCGFIK--MDEYYLM 495
               +  +++D Y KCG ++  MD ++ M
Sbjct: 400 LSATLCNAIIDMYAKCGALQTAMDVFFGM 428



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 196/498 (39%), Gaps = 153/498 (30%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C       +G  +H    K G + S   + N +L +Y+ CG  T A  +FD++  R
Sbjct: 140 VLKACAAKSCYWLGVCVHAQSFKLG-MGSHACVQNAILNIYVACGLITSARRVFDDISER 198

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
              SWN+MI G+ K+G  E+++ +F  M +                              
Sbjct: 199 TLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVH 258

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTL-------------------------- 125
                     +    N L+  +AK G LK A+++                          
Sbjct: 259 LHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLID 318

Query: 126 -----FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA---- 176
                FN MP +N ++WNS+I C+V+ G   EAV LF  +         CD+ ++A    
Sbjct: 319 CALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRM---------CDSGVMANDTT 369

Query: 177 --TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
              ++ +C+ +  L  GKQ HS+I  N +   + L ++++++Y KCG   +A  V   M 
Sbjct: 370 LVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP 429

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           E +                               +V WN +I     +    EA+ +F K
Sbjct: 430 EKN-------------------------------AVSWNVIIGALALHGYGKEAIEMFEK 458

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQ--------------VHGHAC--------- 331
           M+ +GV  D  T   +LSACS  G ++ G+               V  +AC         
Sbjct: 459 MQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRG 518

Query: 332 ----------KVGVIDDVIVASALLD---TYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
                     K+ V  DV+V SALL    TY    +     K   EL  Y++ L   +  
Sbjct: 519 LLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSN 578

Query: 379 VYSSCGRIEDAKHIFRTM 396
           +YS   R +D K+I++ +
Sbjct: 579 MYSESQRWDDMKNIWKIL 596



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 145/314 (46%), Gaps = 65/314 (20%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           L  +I  C  L  L   K +H+ I+++GL                      A QVL + K
Sbjct: 39  LHYLIDQCISLKQL---KHVHAQIILHGL----------------------ATQVLTLGK 73

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                    L+S       +  A ++FD+    +  M+N +I GY ++++  ++LLL+ +
Sbjct: 74  ---------LVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRR 124

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M  +G+L +  T+  VL AC++      G  VH  + K+                   GM
Sbjct: 125 MVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKL-------------------GM 165

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
            S AC            + N ++ +Y +CG I  A+ +F  +  ++L+SWNSMI G S+ 
Sbjct: 166 GSHAC------------VQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKM 213

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G   EA+ +F  M ++ L  D F+L  ++S      + +LG  V   + + G++ D I++
Sbjct: 214 GRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVT 273

Query: 475 TSLVDFYCKCGFIK 488
            +L+D Y KCG +K
Sbjct: 274 NALMDMYAKCGNLK 287


>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
 gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
          Length = 618

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 226/487 (46%), Gaps = 105/487 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG-HKEKSLQLFNVM--- 98
           ++N L+  Y+R     +A  +FDEMP R+  SW AM+ G+ KLG H E +  L +++   
Sbjct: 126 VSNNLISAYVRFDEVANARKVFDEMPERSIVSWTAMMNGYQKLGCHGEVARLLMDMLIAG 185

Query: 99  PQKNDFSWNMLISG----------------------------------FAKAGELKTART 124
            Q N  ++  L+                                    +A+ G++  A T
Sbjct: 186 VQGNSLTFVCLLKSCGERCDARLGQQVHCCVVKGGWSNVIVDSAITHFYAQCGDVAAAST 245

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ M  R+ I+W +MI  YV++G + +A+++F  + S   E  + + F + + + ACA+
Sbjct: 246 VFDRMASRDVISWTTMITAYVQHGHSDKALQMFPTMVS---EGFRPNEFTVCSALKACAE 302

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
             AL +GKQ+H  I+     +D  +GS+LV +Y                           
Sbjct: 303 EKALRFGKQLHGAIVKKLYKYDIHVGSALVTMY--------------------------- 335

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
               A CG++ DA+ VFD+    +++ W SMISGY  +    EA+LLF KM+   V  + 
Sbjct: 336 ----ARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNH 391

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+ S+LSAC S+  + HGK++H    K  + +++ + S L+  Y++RG  + A ++   
Sbjct: 392 LTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILE- 450

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                                          MP++  ++W +MI G +  G  +EAL   
Sbjct: 451 ------------------------------AMPDRDAVAWTAMISGYNNLGHNVEALKSL 480

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M    +  + ++ +S + ACA + +L+ G ++   V      S+  +  SL+D Y +C
Sbjct: 481 DEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRC 540

Query: 485 GFIKMDE 491
           G  K+DE
Sbjct: 541 G--KVDE 545



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 215/478 (44%), Gaps = 106/478 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC       +G+Q+H   +K G  N  +  A  +   Y +CG+   A  +FD M  R
Sbjct: 196 LLKSCGERCDARLGQQVHCCVVKGGWSNVIVDSA--ITHFYAQCGDVAAASTVFDRMASR 253

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS--------------------- 105
           +  SW  MI  +++ GH +K+LQ+F  M     + N+F+                     
Sbjct: 254 DVISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLH 313

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + L++ +A+ GE+  A+T+F+ MPRRN I W SMI  Y ++G   
Sbjct: 314 GAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGE 373

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EAV LF+++    + R+  +   + +++ AC  + ++ +GK++H+ I+ N ++ +  +GS
Sbjct: 374 EAVLLFRKMK---MRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQIGS 430

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV  Y + G+   A ++L  M                                D  +V 
Sbjct: 431 TLVWFYNRRGEHTYATRILEAMP-------------------------------DRDAVA 459

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MISGY +   + EAL    +M  +GV+ +  T +S L AC+ L  L+ G+++HG   
Sbjct: 460 WTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVN 519

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     +V V  +L+D Y + G   +A ++F  +  ++ +    MIT             
Sbjct: 520 KTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMIT------------- 566

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                             G +QNG   EAL     M +    +D+F L++V+S+C + 
Sbjct: 567 ------------------GFTQNGRSEEALKYMFLMQQEGYVVDEFVLSTVLSSCGDF 606



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 173/382 (45%), Gaps = 66/382 (17%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N LIS + +  E+  AR +F++MP R+ ++W +M++ Y + G   E  RL  ++   
Sbjct: 125 FVSNNLISAYVRFDEVANARKVFDEMPERSIVSWTAMMNGYQKLGCHGEVARLLMDM--- 181

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L+  +Q ++     ++ +C +      G+Q+H  ++  G   + ++ S++ + Y +CGD 
Sbjct: 182 LIAGVQGNSLTFVCLLKSCGERCDARLGQQVHCCVVKGGWS-NVIVDSAITHFYAQCGDV 240

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            +A+ V + M   D                                + W +MI+ Y+ + 
Sbjct: 241 AAASTVFDRMASRD-------------------------------VISWTTMITAYVQHG 269

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              +AL +F  M   G   +  T+ S L AC+    L  GKQ+HG   K     D+ V S
Sbjct: 270 HSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKKLYKYDIHVGS 329

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+  Y++ G   DA  +F ++   +TI   +MI+ Y+  G  E+A  +FR M  + +  
Sbjct: 330 ALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVF- 388

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
                                         ++  ++ S++SAC ++ S+  G+++ A++ 
Sbjct: 389 ------------------------------VNHLTIVSLLSACGSMQSIYHGKELHAQII 418

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
              ++ +  I ++LV FY + G
Sbjct: 419 KNCMEENLQIGSTLVWFYNRRG 440



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 43/217 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C +  SI+ GK+LH   +K   +   L I + L+  Y R G  T A  + + M
Sbjct: 394 IVSLLSACGSMQSIYHGKELHAQIIKN-CMEENLQIGSTLVWFYNRRGEHTYATRILEAM 452

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNM------------- 108
           P R+  +W AMI G+  LGH  ++L+  +      V+P    +S  +             
Sbjct: 453 PDRDAVAWTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGR 512

Query: 109 --------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               LI  + + G++  AR +F+ MP  N + W  MI  + +NG
Sbjct: 513 RIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGFTQNG 572

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
            + EA++    +     E    D F+L+TV+ +C D 
Sbjct: 573 RSEEALKYMFLMQQ---EGYVVDEFVLSTVLSSCGDF 606


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 224/494 (45%), Gaps = 83/494 (16%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFDEMP 68
           LQ C+ H  +  GKQLH       IL S  P   +A++L+  Y +  +   A  +FD  P
Sbjct: 41  LQHCSDHRLLRQGKQLHARL----ILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTP 96

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF---------NVMPQ------------------- 100
            RN F+WNAM+ G+        +L LF         N  P                    
Sbjct: 97  HRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPE 156

Query: 101 ---------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                           + F  N LI+ + +  E+  AR +F+ M  R+ + WN+MI  Y 
Sbjct: 157 LAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYS 216

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +     E  RL+ E+ +  V  +  +     +V+ AC     L +G ++H  +  +G++ 
Sbjct: 217 QRRLYDECKRLYLEMLN--VSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEI 274

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  L +++V +Y KCG  + A ++   M+E D+    A+ISGY + G ++DA  VF    
Sbjct: 275 DVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVE 334

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           +    MWN++ISG + N +      L  +M+ +G+  +A TLAS+L + S    L  GK+
Sbjct: 335 NPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKE 394

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHG+A + G   +V V+++++D Y K G                             CG 
Sbjct: 395 VHGYAIRRGYEQNVYVSTSIIDAYGKLG---------------------------CICG- 426

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
              A+ +F    ++SLI W S+I   + +G    AL L+  M    +R D  +L SV++A
Sbjct: 427 ---ARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTA 483

Query: 446 CANISSLELGEQVF 459
           CA+   ++    +F
Sbjct: 484 CAHSGLVDEAWNIF 497



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 180/398 (45%), Gaps = 35/398 (8%)

Query: 92  LQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           L L +V P  ++F  + LI  ++K+     AR +F+  P RN   WN+M+  Y  N   R
Sbjct: 60  LILLSVTP--DNFLASKLILFYSKSNHAHFARKVFDTTPHRNTFTWNAMLLGYSFNSMFR 117

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACAD-LAALEYGKQIHSHILVNGLDFDSVLG 210
            A+ LF             D F ++ V+ A A    + E  K++H  IL  GL       
Sbjct: 118 HALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKEVHCLILRRGL------- 170

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                                     D F L+ALI+ Y  C ++  AR VFD  ++   V
Sbjct: 171 ------------------------YSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIV 206

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            WN+MI GY       E   L+ +M   + V  +  T  SV+ AC     L  G ++H  
Sbjct: 207 TWNAMIGGYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRF 266

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  DV +++A++  Y+K G    A ++F  ++  D +    +I+ Y   G ++DA
Sbjct: 267 VKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDA 326

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +FR + N  L  WN++I G+ QN       DL   M    L  +  +LAS++ + +  
Sbjct: 327 MGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYF 386

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           S+L  G++V       G + +  +STS++D Y K G I
Sbjct: 387 SNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCI 424



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 168/396 (42%), Gaps = 72/396 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++Q+C     +  G +LH  F+K+  +   + ++N ++ MY +CG    A  +F+ M  +
Sbjct: 247 VMQACGQSMDLAFGMELH-RFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREK 305

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  ++ A+I G+M  G  + ++ +F  +       WN +ISG  +  + +    L   M 
Sbjct: 306 DEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQ 365

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                                                L  +A  LA+++ + +  + L  
Sbjct: 366 GSG----------------------------------LSPNAVTLASILPSFSYFSNLRG 391

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK++H + +  G + +  + +S+++ YGK G                  C+         
Sbjct: 392 GKEVHGYAIRRGYEQNVYVSTSIIDAYGKLG------------------CI--------- 424

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG    AR VFD +   S ++W S+IS Y ++ +   AL L+ +M   G+  D  TL SV
Sbjct: 425 CG----ARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQMLDKGIRPDPVTLTSV 480

Query: 311 LSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           L+AC+  G ++    + +    K G+   V   + ++   S+ G  S+A +  SE+ +  
Sbjct: 481 LTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEMPIEP 540

Query: 370 TI-LLNTMITVYSSCGRIEDAK----HIFRTMPNKS 400
           +  +   ++   S  G +E  K    H+F   P  +
Sbjct: 541 SAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENT 576


>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
 gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
          Length = 829

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 232/525 (44%), Gaps = 103/525 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  +I +GK +H   +  G+L   + + N ++ MY +CG    A  +F+ M  +
Sbjct: 149 VLDACASMRAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAK 208

Query: 71  NCFSWNAMI----------EGFMKLGH------KEKSLQLFNVMP--------------- 99
           N  +WN MI          E F  LG       +   + L +V+                
Sbjct: 209 NAVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSIVRGRIVH 268

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + ++   N L++ + K G+L+ AR     +  R+ I+W +++  Y R+G  +
Sbjct: 269 EIVAGEGLESDNTVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGK 328

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ + K ++    E ++ D+F    ++ +C  +AAL  G++IH  +  +G++ D VL +
Sbjct: 329 RAIAVIKRMDH---EGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQT 385

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV- 270
           +LV++YGK                               CG  + ARR FDR +D   V 
Sbjct: 386 ALVDMYGK-------------------------------CGNPDAARRAFDRMSDVRDVT 414

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +WN++++ Y+  ++  E L +F +M   GV  DA T  S+L AC+SL  L  G+  H   
Sbjct: 415 VWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRM 474

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            + G+ D   VASA                          +L  ++I +Y+ CG + DAK
Sbjct: 475 LERGLFDRQAVASA-------------------------DLLTTSVINMYAKCGSLADAK 509

Query: 391 HIF---RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
             F   R      +++W++M+   SQ G   EAL  F +M +  ++ D  S  S I+ C+
Sbjct: 510 AEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCS 569

Query: 448 NISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +   +      F  +    G+   +     LVD   + G+I+  E
Sbjct: 570 HSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAE 614



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 206/460 (44%), Gaps = 106/460 (23%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKT- 121
           M  R+ FSWN  I  + + GH  ++L++F  M       +  S   ++  FA  G+L   
Sbjct: 1   MADRSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIAILDAFASLGDLSQG 60

Query: 122 -----------------------------------ARTLFNDMPRRNAIAWNSMIHCYVR 146
                                              AR  F+ M  RN ++W++MI  Y +
Sbjct: 61  EFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQ 120

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G   +A+ LF  ++    E ++ +A    +V+ ACA + A+  GK IH  I+ +GL  D
Sbjct: 121 RGHPGDALELFVRMDH---EGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGD 177

Query: 207 SV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
            V LG+++VN+YGKC                               G+++ AR VF+R  
Sbjct: 178 DVILGNTIVNMYGKC-------------------------------GEVDLAREVFERME 206

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             ++V WN+MI+    ++   EA  L  +M  +G+  +  TL SV+ AC+ +  +  G+ 
Sbjct: 207 AKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSIVRGRI 266

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH                   +  +  G+ SD              + N ++ +Y  CG+
Sbjct: 267 VH-------------------EIVAGEGLESD------------NTVANALVNLYGKCGK 295

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +  A+H    +  +  ISW +++   +++G    A+ +   M+   +++D F+  +++ +
Sbjct: 296 LRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLES 355

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           C  I++L LGE++  R+   G++ D ++ T+LVD Y KCG
Sbjct: 356 CVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCG 395



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 123/508 (24%), Positives = 216/508 (42%), Gaps = 110/508 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+  H    +   L S + +A  +L MY RCG+ + A   FD M  RN  SW+AMI  + 
Sbjct: 60  GEFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYA 119

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSW--------------------------------- 106
           + GH   +L+LF  M  +    N  ++                                 
Sbjct: 120 QRGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDV 179

Query: 107 ---NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
              N +++ + K GE+  AR +F  M  +NA+ WN+MI    R+   +EA  L  E++ D
Sbjct: 180 ILGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLD 239

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               L+ +   L +VI ACA + ++  G+ +H  +   GL+ D+ + ++LVNLYGK    
Sbjct: 240 ---GLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGK---- 292

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      CGK+  AR   +       + W ++++ Y  + 
Sbjct: 293 ---------------------------CGKLRAARHALEGIETRDKISWTTLLAAYARHG 325

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
               A+ +  +M   GV  D+ T  ++L +C ++  L  G+++H    + G+  D ++ +
Sbjct: 326 HGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQT 385

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+D Y K G P  A + F                      R+ D + +           
Sbjct: 386 ALVDMYGKCGNPDAARRAFD---------------------RMSDVRDV---------TV 415

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+++          E L +F  M+   +  D  +  S++ ACA++++L LG    +R+ 
Sbjct: 416 WNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRML 475

Query: 464 IIGL------DSDQIISTSLVDFYCKCG 485
             GL       S  +++TS+++ Y KCG
Sbjct: 476 ERGLFDRQAVASADLLTTSVINMYAKCG 503



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 168/369 (45%), Gaps = 69/369 (18%)

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV--ERLQCDAFILATVIGACADLA 186
           M  R+  +WN  I  Y RNG    A+ +F+ +  + V  +R+ C A     ++ A A L 
Sbjct: 1   MADRSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIA-----ILDAFASLG 55

Query: 187 ALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            L  G+  H  +   +GL  D V+ ++++ +Y +C                         
Sbjct: 56  DLSQGEFFHRTVCEASGLGSDVVVATAVLTMYNRC------------------------- 90

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
                 G ++ ARR FD     + V W++MI+ Y       +AL LF +M   GV  +A 
Sbjct: 91  ------GSVSHARRAFDAMVVRNVVSWSAMIAAYAQRGHPGDALELFVRMDHEGVKANAI 144

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T  SVL AC+S+  +  GK +H          + IVA  LL                   
Sbjct: 145 TFVSVLDACASMRAIALGKSIH----------ERIVADGLLGD----------------- 177

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
              D IL NT++ +Y  CG ++ A+ +F  M  K+ ++WN+MI   S++    EA  L  
Sbjct: 178 ---DVILGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLG 234

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M+   LR +K +L SVI ACA + S+  G  V   V   GL+SD  ++ +LV+ Y KCG
Sbjct: 235 EMDLDGLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCG 294

Query: 486 FIKMDEYYL 494
            ++   + L
Sbjct: 295 KLRAARHAL 303



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 158/401 (39%), Gaps = 92/401 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    SI  G+ +H     +G L S   +AN L+ +Y +CG    A    + +
Sbjct: 248 LVSVIDACAWMQSIVRGRIVHEIVAGEG-LESDNTVANALVNLYGKCGKLRAARHALEGI 306

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             R+  SW  ++  + + GH ++++ +   M  +    + F++                 
Sbjct: 307 ETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGE 366

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPR-RNAIAWNSMIHCYVRN 147
                               L+  + K G    AR  F+ M   R+   WN+++  YV  
Sbjct: 367 EIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVWNALLAAYVLR 426

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD- 206
              +E + +F  ++   ++ +  DA    +++ ACA LAAL  G+  HS +L  GL FD 
Sbjct: 427 DQGKETLGIFARMS---LQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGL-FDR 482

Query: 207 ------SVLGSSLVNLYGKCGDFNSANQVL---NMMKEPDDFCLSALISGYANCGKMNDA 257
                  +L +S++N+Y KCG    A          +  D    SA+++ Y+  G   +A
Sbjct: 483 QAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEA 542

Query: 258 RRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR----------------- 296
            R F           SV + S I+G   +    EA+  F  +R                 
Sbjct: 543 LRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVD 602

Query: 297 ---RNGVLEDA-------------STLASVLSACSSLGFLE 321
              R G + +A             ST  ++LSAC + G LE
Sbjct: 603 LLSRAGWIREAEALMRRAPLGAHHSTWMTLLSACRTYGDLE 643


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 237/515 (46%), Gaps = 109/515 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+ +H   +K G +   + +A+ L+ MY +     D++ +FDEMP R+  SWN +I  F
Sbjct: 124 LGRMIHTVVVKSGHVCDVV-VASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSF 182

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWN----------------------------------- 107
            + G  EK+L+LF  M +++DF  N                                   
Sbjct: 183 YQRGDAEKALELFGRM-ERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELD 241

Query: 108 -----MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
                 L+  + +   L+ AR +F  M R++ +AWNSMI  YV  G ++  V L   LN 
Sbjct: 242 EYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVEL---LNR 298

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
            ++E  +     L +++ AC+    L +GK +H +++ + +D D  +  SL++LY KC  
Sbjct: 299 MIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKC-- 356

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                        G++  A  VF +T       WN MISGY+S 
Sbjct: 357 -----------------------------GEVKLAETVFLKTQKDVVESWNVMISGYVSV 387

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               +A+ ++ +M   GV  D  T  SVLS CS L  LE GKQ+H           + ++
Sbjct: 388 GNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIH-----------LSIS 436

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
            + L+T                    D +LL+ ++ +YS CG +++A  IF ++P K ++
Sbjct: 437 ESRLET--------------------DELLLSALLDMYSKCGNVKEASRIFNSIPKKDVV 476

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW  MI     +G P EAL  F  M K  ++ D  +  +V+SAC +   ++ G + F+++
Sbjct: 477 SWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQM 536

Query: 463 -TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            +  G+++     + L+D   + G + ++ Y ++Q
Sbjct: 537 RSKYGIEASIEQYSCLIDILGRAGRL-LEAYGILQ 570



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 224/522 (42%), Gaps = 107/522 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL+ C    S+   K +H   L  G L S + +   L+ +Y  C +   A L+F+ +
Sbjct: 6   LLSLLRECTNTKSLRQAKLVHQRILTVG-LRSDVVLCKSLINVYFACKDHCSARLVFENI 64

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKAGELKT 121
             R + + WN+++ G+ K      +L++F  +        + F++  +I  +   G    
Sbjct: 65  DIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFL 124

Query: 122 ARTL-----------------------------------FNDMPRRNAIAWNSMIHCYVR 146
            R +                                   F++MP R+  +WN++I  + +
Sbjct: 125 GRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQ 184

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G A +A+ LF  +     E    ++  +   I AC+ L  LE GK+IH   L    + D
Sbjct: 185 RGDAEKALELFGRMERSDFEP---NSVSITVAISACSRLLCLERGKEIHRKYLKKEFELD 241

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + S+LV++                               Y  C  +  AR VF +   
Sbjct: 242 EYVNSALVDM-------------------------------YGRCDFLEMAREVFQQMRR 270

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            S V WNSMI GY++  +    + L ++M   G     +TL S+L ACS    L HGK V
Sbjct: 271 KSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFV 330

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG+  +  V  D+ +  +L+D Y K G          E+K+ +T+ L T   V       
Sbjct: 331 HGYVIRSVVDADIYINCSLIDLYFKCG----------EVKLAETVFLKTQKDVVE----- 375

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                           SWN MI G    G+  +A+D++  M  + ++ D  +  SV+S C
Sbjct: 376 ----------------SWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTC 419

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + +++LE G+Q+   ++   L++D+++ ++L+D Y KCG +K
Sbjct: 420 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVK 461



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 165/382 (43%), Gaps = 75/382 (19%)

Query: 121 TARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-----DAFI 174
           +AR +F ++  R +   WNS++  Y +N    + +++FK L       L C     D+F 
Sbjct: 56  SARLVFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRL-------LNCPICVPDSFT 108

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
              VI A   L     G+ IH+ ++ +G   D V+ SSLV +Y K   F           
Sbjct: 109 YPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFE---------- 158

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                                D+ +VFD   +     WN++IS +    +  +AL LF +
Sbjct: 159 ---------------------DSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGR 197

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M R+    ++ ++   +SACS L  LE GK++H    K     D  V SAL+D Y +   
Sbjct: 198 MERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGR--- 254

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                       C  +E A+ +F+ M  KSL++WNSMI G    
Sbjct: 255 ----------------------------CDFLEMAREVFQQMRRKSLVAWNSMIRGYVAR 286

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G     ++L   M     R  + +L S++ AC+   +L  G+ V   V    +D+D  I+
Sbjct: 287 GDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYIN 346

Query: 475 TSLVDFYCKCGFIKMDEYYLMQ 496
            SL+D Y KCG +K+ E   ++
Sbjct: 347 CSLIDLYFKCGEVKLAETVFLK 368



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 64/324 (19%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           L +++  C +  +L   K +H  IL  GL  D VL  SL+N+Y  C D  SA        
Sbjct: 6   LLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSA-------- 57

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFH 293
                                  R VF+     S V +WNS++SGY  N+   + L +F 
Sbjct: 58  -----------------------RLVFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFK 94

Query: 294 KMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           ++    + + D+ T  +V+ A  +LG    G+ +H    K G + DV+VAS+L+  Y+K 
Sbjct: 95  RLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKF 154

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
            +                                ED+  +F  MP + + SWN++I    
Sbjct: 155 NL-------------------------------FEDSVQVFDEMPERDVASWNTVISSFY 183

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q G   +AL+LF  M + D   +  S+   ISAC+ +  LE G+++  +      + D+ 
Sbjct: 184 QRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEY 243

Query: 473 ISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++++LVD Y +C F++M      Q
Sbjct: 244 VNSALVDMYGRCDFLEMAREVFQQ 267



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 16/234 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++  GKQ+HL  + +  L +   + + LL MY +CGN  +A  +F+ +P++
Sbjct: 415 VLSTCSQLAALEKGKQIHLS-ISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKK 473

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW  MI  +   G   ++L  F+ M     + +  ++  ++S    AG +      F
Sbjct: 474 DVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYF 533

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M  +  I      ++ +I    R G   EA  + ++         + +A +L+T+  A
Sbjct: 534 SQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQ-----KPETRDNAELLSTLFCA 588

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C        G  I + +LV     D+   + L NLY     +++A +V   MKE
Sbjct: 589 CCLHRDHLLGYTI-AKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMKE 641


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 230/518 (44%), Gaps = 105/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C     IH+GK +H   +K G++   L + N ++ +Y +CG   +A+ LFD+MP +
Sbjct: 216 LIKACTGKCDIHLGKSVHGMAVKMGLI-MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQ 274

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND--------------------------- 103
           N  SWN++I GF + G   ++ + F  + +  D                           
Sbjct: 275 NLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMV 334

Query: 104 --------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N LI  ++K G L  A  LF  +  ++ ++WNSMI  Y R GF
Sbjct: 335 IHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGF 394

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E   L +++  +  E ++ +   +  ++ AC + + L   + +H + L +   +    
Sbjct: 395 VFETFDLLRKMWME-EELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQY---- 449

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
              L+N                          +A I+ YA CG +  A  VF      S 
Sbjct: 450 -KELIN--------------------------NAFIAAYAKCGSLVFAEHVFFGMNTKSV 482

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN++I G+  N +  +AL  + +M R G+L D  ++ S+L AC  LG L++GK++HG 
Sbjct: 483 SSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGF 542

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  +  VA +LL                               ++Y  C +    
Sbjct: 543 VLRNGLEMNSFVAVSLL-------------------------------SLYFHCSKPFYG 571

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +  F  M +K+ + WN+M+ G SQN  P EAL LF  M    L  D+ ++AS++ AC+ +
Sbjct: 572 RTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQL 631

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           S+L LG++V        L  D  ++ SL+D Y K GF+
Sbjct: 632 SALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFL 669



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 134/523 (25%), Positives = 232/523 (44%), Gaps = 105/523 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R + +  LLQ C  + ++ +G++L          +    +  RL+ MY  CG P ++ L+
Sbjct: 106 RKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLV 165

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKS----LQLFNVMP-QKNDFSW------------ 106
           FD +  +N F WNA++ G+++    +++    L+L +V   Q ++F++            
Sbjct: 166 FDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCD 225

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N +I+ + K G L  A  LF+ MP +N I+WNS+I  
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRG 285

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           +  NGF  EA R F+ L  +  + L  D   + T++  C+    ++ G  IH   +  GL
Sbjct: 286 FSENGFWLEAYRAFRSL-LESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGL 344

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             + ++ ++L+++Y KCG                  CLS             +A  +F +
Sbjct: 345 VHELMVCNALIDMYSKCG------------------CLS-------------EAAILFRK 373

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS--TLASVLSACSSLGFLE 321
             + S V WNSMI  Y       E   L  KM     L + +  T+ ++L AC     L 
Sbjct: 374 IENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELL 433

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
             + +HG+              +L  ++                  Y  ++ N  I  Y+
Sbjct: 434 SLRALHGY--------------SLRHSFQ-----------------YKELINNAFIAAYA 462

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG +  A+H+F  M  KS+ SWN++I G +QNG PI+ALD +  M +L +  D FS+ S
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ++ AC  +  L+ G+++   V   GL+ +  ++ SL+  Y  C
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHC 565



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 238/522 (45%), Gaps = 112/522 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL  C+   ++ VG  +H   +K G+++  L + N L+ MY +CG  ++A +LF ++
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHE-LMVCNALIDMYSKCGCLSEAAILFRKI 374

Query: 68  PRRNCFSWNAMI-----EGFM--------KLGHKEKSLQ-----LFNVMPQ--------- 100
             ++  SWN+MI     EGF+        K+  +E+ ++     + N++P          
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLS 434

Query: 101 ---------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                    ++ F +     N  I+ +AK G L  A  +F  M  ++  +WN++I  + +
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 147 NGFAREAVRLFKELNSDLVERLQC--DAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           NG   +A+  + E+      RL    D F + +++ AC  L  L+YGK+IH  +L NGL+
Sbjct: 495 NGDPIKALDFYFEMT-----RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLE 549

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +S +  SL++LY                                +C K    R  F+R 
Sbjct: 550 MNSFVAVSLLSLY-------------------------------FHCSKPFYGRTYFERM 578

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            D +SV WN+M+SGY  N    EAL LF +M  +G+  D   +AS+L ACS L  L  GK
Sbjct: 579 GDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGK 638

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +VH  A K  +++D  VA +L+D Y+K G    + ++F+ L   +    N MIT      
Sbjct: 639 EVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMIT------ 692

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                    G   +G   +A++LF +M + D + D+F+   V+ 
Sbjct: 693 -------------------------GFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQ 727

Query: 445 ACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           AC +   +  G    A++ T+  L+ +      ++D   + G
Sbjct: 728 ACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAG 769



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +L   +IT+YS CG   +++ +F  + NK+L  WN+++ G  +N    EA+  F  + 
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 429 KL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            + + + D F+   +I AC     + LG+ V      +GL  D  +  +++  Y KCGF+
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C+   ++ +GK++H   LK  ++     +A  L+ MY + G    +  +F+ +
Sbjct: 621 IASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMYAKSGFLGHSQRIFNRL 679

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAG------ 117
             +   SWN MI GF   G   K+++LF  M     Q + F++  ++     AG      
Sbjct: 680 NGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGL 739

Query: 118 -ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             L   +TL+   P     A   +I    R G   EA+    E+        + DA I +
Sbjct: 740 NYLAQMQTLYKLEPELEHYA--CVIDMLGRAGRLNEALNFINEMPE------EPDAKIWS 791

Query: 177 TVIGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +++ +      LE G++    +L +     DS +   L NLY   G ++    V   MK+
Sbjct: 792 SLLSSSITYVDLEMGEKFAEKLLALEANKADSYI--LLSNLYATAGKWDVVRMVRQKMKD 849


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 211/448 (47%), Gaps = 68/448 (15%)

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S N+ IS +AK  +L  AR LF+ MP+R  ++WN+MI  Y ++G   EA+ L   ++   
Sbjct: 74  STNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRS- 132

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++      ++V+  CA L  L  GK IH  +L +G +   ++GS+L+  Y  C +  
Sbjct: 133 --HMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIG 190

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V +++   ++   S ++ GY  C  M+DA  VF +      V W ++ISG+  N +
Sbjct: 191 EARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGD 250

Query: 285 DT-EALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
              +AL +F  M R+G    +  T   V+ AC  LG L  G+ VHG   K G+  D  + 
Sbjct: 251 GCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIG 310

Query: 343 SALLDTYSK-------------------------------RGMPSDACKLFSELKVYDTI 371
            AL++ Y +                                G   DA  +F+ +   + +
Sbjct: 311 GALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPV 370

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSL------------------------------ 401
             N MI  Y+  G+++D+K +F  MP +++                              
Sbjct: 371 SYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEK 430

Query: 402 --ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             ++WNSMI G   +G P EAL L+  M++L ++  + + +++  AC+ + SL+ G+ + 
Sbjct: 431 DPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLH 490

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           A +     +S+  + TSL+D Y KCG I
Sbjct: 491 AHLIKTPFESNVYVGTSLIDMYSKCGSI 518



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 210/516 (40%), Gaps = 129/516 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L  C     +  GK +H   LK G  +  L + + LL  Y  C    +A  +FD +
Sbjct: 141 FSSVLSVCARLRCLRDGKLIHCLVLKSGSESFEL-VGSALLYFYASCFEIGEARRVFDVL 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE-LKTARTLF 126
            RRN   W+ M+ G++     + +L +F  MP+++  +W  LISGF+K G+    A  +F
Sbjct: 200 VRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMF 259

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             M R      N                                  F    V+ AC  L 
Sbjct: 260 RLMMRSGETTPNE---------------------------------FTFDCVVRACGRLG 286

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-------------------------- 220
            L  G+ +H  ++  GL++D  +G +LV  Y +C                          
Sbjct: 287 ILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIE 346

Query: 221 -----GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDTSSVM 271
                G    A  V N M E +    + +I GYA  G+M+D++R+F+    RT  +S+ M
Sbjct: 347 GLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTM 406

Query: 272 ----------------------------WNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                                       WNSMISGYI + +  EAL L+  M R  + + 
Sbjct: 407 ISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQT 466

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            ST +++  ACS LG L+ G+ +H H  K     +V V ++L+D YSK            
Sbjct: 467 RSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSK------------ 514

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CG I +A+  F ++ + ++ +W ++I G + +G   EA+ L
Sbjct: 515 -------------------CGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISL 555

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F  M +  L  +  +   V+SAC+    +  G ++F
Sbjct: 556 FDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIF 591



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 203/470 (43%), Gaps = 109/470 (23%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA-R 151
           ++F+V+ ++N+  W++++ G+     +  A ++F  MPRR+ +AW ++I  + +NG    
Sbjct: 194 RVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCG 253

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ +F+ +          + F    V+ AC  L  L  G+ +H  ++  GL++D  +G 
Sbjct: 254 KALEMFRLMMRS--GETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGG 311

Query: 212 SLVNLYGKC-------------------------------GDFNSANQVLNMMKEPDDFC 240
           +LV  Y +C                               G    A  V N M E +   
Sbjct: 312 ALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVS 371

Query: 241 LSALISGYANCGKMNDARRVFD----RTTDTSSVM------------------------- 271
            + +I GYA  G+M+D++R+F+    RT  +S+ M                         
Sbjct: 372 YNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKD 431

Query: 272 ---WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              WNSMISGYI + +  EAL L+  M R  + +  ST +++  ACS LG L+ G+ +H 
Sbjct: 432 PVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHA 491

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDA----CKLFSELKVYDTILLN---------- 374
           H  K     +V V ++L+D YSK G   +A      +FS      T L+N          
Sbjct: 492 HLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSE 551

Query: 375 ------------------TMITVYSSCGR---IEDAKHIFRTMP-----NKSLISWNSMI 408
                             T + V S+C R   + +   IF +M        +L  +  ++
Sbjct: 552 AISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVV 611

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
             L ++G   EA +    + K+ L  D     +++SAC     LE+GE+V
Sbjct: 612 DLLGRSGHIREAEEF---IKKMPLEADGVVWGALLSACWFWMDLEVGERV 658



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 69/116 (59%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           + I  N  I+ Y+   +++ A+ +F  MP ++++SWN+MI   S++G   EAL L  +M+
Sbjct: 71  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 130

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  +++ + + +SV+S CA +  L  G+ +   V   G +S +++ ++L+ FY  C
Sbjct: 131 RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASC 186


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/520 (28%), Positives = 236/520 (45%), Gaps = 105/520 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++++C    ++    QLH  F+ KG     + +   L+  Y + G   +A L+FD +
Sbjct: 157 LASVVRACTQLGNLSQALQLH-GFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGL 215

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             +   +W A+I G+ KLG  E SL+LFN M + + +    +IS                
Sbjct: 216 KVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGK 275

Query: 113 ------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                   + K  ++KT R LFN +  ++ ++W +MI   ++N 
Sbjct: 276 QIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNS 335

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  +A+ LF E+   + +  + DAF   +V+ +C  L AL+ G+Q+H++ +   +D    
Sbjct: 336 FHGDAMDLFVEM---VRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNID---- 388

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                       DDF  + LI  YA C  + +AR+VFD     +
Sbjct: 389 ---------------------------NDDFVKNGLIDMYAKCDSLTNARKVFDLVAAIN 421

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V +N+MI GY   ++  EAL LF +MR +       T  S+L   SSL  LE   Q+H 
Sbjct: 422 VVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHC 481

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K GV  D    SAL+D YSK     DA  +F E  +YD                   
Sbjct: 482 LIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEE--IYD------------------- 520

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                     + ++ WN+M  G SQ     E+L L+ ++    L+ ++F+ A+VI+A +N
Sbjct: 521 ----------RDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASN 570

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           I+SL  G+Q   +V  +GLD D  ++ SLVD Y KCG I+
Sbjct: 571 IASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIE 610



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/463 (27%), Positives = 212/463 (45%), Gaps = 77/463 (16%)

Query: 28  HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR------NCFSWNAMIEG 81
           H  FL K  ++ TL  +  LL  +++   P D+ +L      R         S N +   
Sbjct: 13  HFKFLNKDNVSQTLHFST-LLPPFLQ---PHDSPILIQRKIGRELGKLLQLPSPNILTSH 68

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           + K  H    +  F+   Q + F  N L+  ++K      A+ LF+ MP RN + W+SM+
Sbjct: 69  YYKKIHAHIVVLGFH---QHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMV 125

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y ++G++ EA+ LF        E+   + +ILA+V+ AC  L  L    Q+H  ++  
Sbjct: 126 SMYTQHGYSVEALLLFCRFMRSCSEK--PNEYILASVVRACTQLGNLSQALQLHGFVVKG 183

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G   D  +G+SL++ Y K                                G +++AR +F
Sbjct: 184 GFVQDVYVGTSLIDFYAKR-------------------------------GYVDEARLIF 212

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D     ++V W ++I+GY        +L LF++MR   V  D   ++SVLSACS L FLE
Sbjct: 213 DGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLE 272

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GKQ+HG+  + G   DV V + ++D Y K                              
Sbjct: 273 GGKQIHGYVLRRGFDMDVSVVNGIIDFYLK------------------------------ 302

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            C +++  + +F  + +K ++SW +MI G  QN    +A+DLF  M +   + D F   S
Sbjct: 303 -CHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTS 361

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           V+++C ++ +L+ G QV A    + +D+D  +   L+D Y KC
Sbjct: 362 VLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKC 404



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/520 (26%), Positives = 233/520 (44%), Gaps = 110/520 (21%)

Query: 8   LARLLQ--SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           L +LLQ  S N   S H  K++H H +  G     + + N LL  Y +    +DA  LFD
Sbjct: 53  LGKLLQLPSPNILTS-HYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFD 111

Query: 66  EMPRRNCFSWNAMIEGFMK------------------------------------LGHKE 89
            MP RN  +W++M+  + +                                    LG+  
Sbjct: 112 TMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLS 171

Query: 90  KSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           ++LQL   + +    ++ +    LI  +AK G +  AR +F+ +  +  + W ++I  Y 
Sbjct: 172 QALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYA 231

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           + G +  +++LF ++    V     D +++++V+ AC+ L  LE GKQIH ++L  G D 
Sbjct: 232 KLGRSEVSLKLFNQMREGDV---YPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDM 288

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D     S+VN                            +I  Y  C K+   R++F+R  
Sbjct: 289 DV----SVVN---------------------------GIIDFYLKCHKVKTGRKLFNRLV 317

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           D   V W +MI+G + N+   +A+ LF +M R G   DA    SVL++C SL  L+ G+Q
Sbjct: 318 DKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQ 377

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH +A KV + +D  V + L+D Y+K                               C  
Sbjct: 378 VHAYAIKVNIDNDDFVKNGLIDMYAK-------------------------------CDS 406

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF-SLASVIS 444
           + +A+ +F  +   +++S+N+MI G S+    +EALDLF  M +L L      +  S++ 
Sbjct: 407 LTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREM-RLSLSPPTLLTFVSLLG 465

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             +++  LEL  Q+   +   G+  D    ++L+D Y KC
Sbjct: 466 LSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKC 505



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 215/503 (42%), Gaps = 111/503 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ +L +C+    +  GKQ+H + L++G  +  + + N ++  Y++C        LF+ +
Sbjct: 258 ISSVLSACSMLEFLEGGKQIHGYVLRRG-FDMDVSVVNGIIDFYLKCHKVKTGRKLFNRL 316

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
             ++  SW  MI G M+      ++ LF  M +K                          
Sbjct: 317 VDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGR 376

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        +DF  N LI  +AK   L  AR +F+ +   N +++N+MI  Y R  
Sbjct: 377 QVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQD 436

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK---QIHSHILVNGLDF 205
              EA+ LF+E+      RL      L T +      ++L   +   QIH  I+  G+  
Sbjct: 437 KLVEALDLFREM------RLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSL 490

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           DS  GS+L+++                               Y+ C  + DAR VF+   
Sbjct: 491 DSFAGSALIDV-------------------------------YSKCSCVGDARLVFEEIY 519

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           D   V+WN+M SGY    E+ E+L L+  ++ + +  +  T A+V++A S++  L HG+Q
Sbjct: 520 DRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQ 579

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H    K+G+ DD  V ++L+D Y+K G   ++ K FS     D    N+MI+ Y     
Sbjct: 580 FHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTY----- 634

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                                     +Q+G   +AL++F  M    ++ +  +   ++SA
Sbjct: 635 --------------------------AQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSA 668

Query: 446 CANISSLELGEQVFARVTIIGLD 468
           C++   L+LG   F  ++  G++
Sbjct: 669 CSHAGLLDLGFHHFESMSKFGIE 691



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 188/445 (42%), Gaps = 106/445 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L SC +  ++  G+Q+H + +K  I N    + N L+ MY +C + T+A  +FD +   
Sbjct: 362 VLNSCGSLQALQKGRQVHAYAIKVNIDNDDF-VKNGLIDMYAKCDSLTNARKVFDLVAAI 420

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQK------------------------ 101
           N  S+NAMIEG+ +     ++L LF  M     P                          
Sbjct: 421 NVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIH 480

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     + F+ + LI  ++K   +  AR +F ++  R+ + WN+M   Y +     
Sbjct: 481 CLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENE 540

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E+++L+K+L    + RL+ + F  A VI A +++A+L +G+Q H                
Sbjct: 541 ESLKLYKDLQ---MSRLKPNEFTFAAVIAAASNIASLRHGQQFH---------------- 581

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                          NQV+ M  + D F  ++L+  YA CG + ++ + F  T       
Sbjct: 582 ---------------NQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIAC 626

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNSMIS Y  + +  +AL +F +M   GV  +  T   +LSACS  G L+ G        
Sbjct: 627 WNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMS 686

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+               + G+   AC                M+++    G+I +AK 
Sbjct: 687 KFGI---------------EPGIDHYAC----------------MVSLLGRAGKIYEAKE 715

Query: 392 IFRTMPNK-SLISWNSMIVGLSQNG 415
             + MP K + + W S++     +G
Sbjct: 716 FVKKMPIKPAAVVWRSLLSACRVSG 740



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 140/301 (46%), Gaps = 62/301 (20%)

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
            Y K+IH+HI+V G                                + D F ++ L+  Y
Sbjct: 68  HYYKKIHAHIVVLGF------------------------------HQHDVFLVNTLLHAY 97

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNGVLEDASTL 307
           +     +DA+++FD     + V W+SM+S Y  +    EALLLF + MR      +   L
Sbjct: 98  SKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYIL 157

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ASV+ AC+ LG L    Q+HG   K G + DV V ++L+D Y+KRG              
Sbjct: 158 ASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGY------------- 204

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                             +++A+ IF  +  K+ ++W ++I G ++ G    +L LF  M
Sbjct: 205 ------------------VDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQM 246

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            + D+  D++ ++SV+SAC+ +  LE G+Q+   V   G D D  +   ++DFY KC  +
Sbjct: 247 REGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKV 306

Query: 488 K 488
           K
Sbjct: 307 K 307


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 215/492 (43%), Gaps = 100/492 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
            RLL  C   + +   K+L  H        +   + NRLL +Y + GN +DA  LFD+M 
Sbjct: 26  TRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMS 85

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
           RR+ FSWNAM+  + K G+ E    +F+ M   +  S+N +I+GF+              
Sbjct: 86  RRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSG------------- 132

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
                             NG + +A+  F  +     E  +   +   +V+ AC+ L  +
Sbjct: 133 ------------------NGCSSQALEFFVRMQE---EGFESTDYTHVSVLHACSQLLDI 171

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE------------- 235
           + GKQIH  I+   L     + ++L N+Y KCG  + A  + + M               
Sbjct: 172 KRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGY 231

Query: 236 ----------------------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
                                 PD   +S ++S Y  CG +++A + F    +   V W 
Sbjct: 232 LQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWT 291

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +M+ G   N ++ +ALLLF +M    V  D  T++SV+S+C+ L  L  G+ VHG A   
Sbjct: 292 TMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIF 351

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           GV  D++V+SAL+D YSK G  +DA  +F  +   + I  N+M                 
Sbjct: 352 GVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSM----------------- 394

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
                         I+G +QNG  +EAL L+  M   +L+ D  +   V+SAC +   +E
Sbjct: 395 --------------ILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVE 440

Query: 454 LGEQVFARVTII 465
            G+  F  ++ I
Sbjct: 441 RGQGYFYSISKI 452



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 166/315 (52%), Gaps = 35/315 (11%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+ L + L++LY K G+ + A  + + M   D F  +A++S Y+  G + D R VFD+ +
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
              +V +N++I+G+  N   ++AL  F +M+  G      T  SVL ACS L  ++ GKQ
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQ 176

Query: 326 VHGHACKVGVIDDVIVASALLDTYSK-------------------------------RGM 354
           +HG      + + V V +AL + Y+K                                G 
Sbjct: 177 IHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQ 236

Query: 355 PSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           P    KLF E++    + D + ++ +++ Y  CG I++A   FR +  K  + W +M+VG
Sbjct: 237 PETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVG 296

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            +QNG   +AL LF  M   ++R D F+++SV+S+CA ++SL  G+ V  +  I G+D D
Sbjct: 297 CAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHD 356

Query: 471 QIISTSLVDFYCKCG 485
            ++S++LVD Y KCG
Sbjct: 357 LLVSSALVDMYSKCG 371



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 110/239 (46%), Gaps = 23/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC    S+  G+ +H   +  G+ +  L +++ L+ MY +CG   DA ++F  M
Sbjct: 325 ISSVVSSCARLASLCQGQAVHGKAVIFGV-DHDLLVSSALVDMYSKCGETADAWIVFKRM 383

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTAR 123
             RN  SWN+MI G+ + G   ++L L+  M  +N    + ++  ++S    AG ++  +
Sbjct: 384 LTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQ 443

Query: 124 TLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  + + + +      ++ MI+   R G+  +AV L K +        + +  I +T+
Sbjct: 444 GYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMT------FEPNCLIWSTL 497

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMK 234
           +  C     +  G+    H+     + D         L N+Y  CG +     V ++MK
Sbjct: 498 LSVCRINCDVNNGEMAARHLF----ELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMK 552


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 247/522 (47%), Gaps = 108/522 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP- 68
           LL+SC    +  +GK +H   ++ G+ L+S   + N L+ +Y +CG+   A L+F+ M  
Sbjct: 32  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSV--VLNTLISLYSKCGDTETARLIFEGMGN 89

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK------------NDFSW-NML 109
           +R+  SW+AM+  F     + +++  F         P +             +++W   +
Sbjct: 90  KRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEI 149

Query: 110 ISGFA----------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
           I GF                        +G+L +A  +F+ MP RN + W  MI  + + 
Sbjct: 150 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 209

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G AR+A+ LF  L+ +L   +  D F  ++V+ AC +L  L  GKQ+HS ++  GL  D 
Sbjct: 210 GCARDAIDLF--LDMELSGYVP-DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 266

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            +G SLV++Y KC                            A  G ++D+R+VF++  + 
Sbjct: 267 CVGCSLVDMYAKC----------------------------AADGSVDDSRKVFEQMPEH 298

Query: 268 SSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           + + W ++I+ Y+ + E D EA+ LF KM    +  +  + +SVL AC +L     G+QV
Sbjct: 299 NVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQV 358

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           + +A K+G+     V ++L+  Y++ G                               R+
Sbjct: 359 YSYAVKLGIASVNCVGNSLISMYARSG-------------------------------RM 387

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           EDA+  F  +  K+L+S+N+++ G ++N    EA  LF  +    + +  F+ AS++S  
Sbjct: 388 EDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGA 447

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           A+I ++  GEQ+  R+   G  S+Q I  +L+  Y +CG I+
Sbjct: 448 ASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 489



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 235/496 (47%), Gaps = 109/496 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDE 66
            A ++++C+  +   VG+ ++   +K G L + + +   L+ M+++  G+   A  +FD+
Sbjct: 131 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 190

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNM------------ 108
           MP RN  +W  MI  F +LG    ++ LF        +P +  +S  +            
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250

Query: 109 ---------------------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                L+  +AK    G +  +R +F  MP  N ++W ++I  Y
Sbjct: 251 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 310

Query: 145 VRNGFA-REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           V++G   +EA+ LF ++ S     ++ + F  ++V+ AC +L+    G+Q++S+ +    
Sbjct: 311 VQSGECDKEAIELFCKMISG---HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--- 364

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
                LG + VN  G                       ++LIS YA  G+M DAR+ FD 
Sbjct: 365 -----LGIASVNCVG-----------------------NSLISMYARSGRMEDARKAFDI 396

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + V +N+++ GY  N +  EA LLF+++   G+   A T AS+LS  +S+G +  G
Sbjct: 397 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 456

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +Q+HG                LL    K G  S+ C            + N +I++YS C
Sbjct: 457 EQIHGR---------------LL----KGGYKSNQC------------ICNALISMYSRC 485

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G IE A  +F  M ++++ISW SMI G +++G    AL++F  M +   + ++ +  +V+
Sbjct: 486 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 545

Query: 444 SACANISSLELGEQVF 459
           SAC+++  +  G++ F
Sbjct: 546 SACSHVGMISEGQKHF 561



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 61/316 (19%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D    + ++ +C      + GK +H  ++ +GL+ DSV+ ++L++LY KCGD  +A  + 
Sbjct: 25  DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 84

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
             M    D                               V W++M+S + +N+ + +A+ 
Sbjct: 85  EGMGNKRDL------------------------------VSWSAMVSCFANNSMEWQAIW 114

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTY 349
            F  M   G   +    A+V+ ACS+  +   G+ ++G   K G ++ DV V   L+D +
Sbjct: 115 TFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMF 174

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K                                G +  A  +F  MP ++L++W  MI 
Sbjct: 175 VK------------------------------GSGDLGSAYKVFDKMPERNLVTWTLMIT 204

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
             +Q G   +A+DLF +M       D+F+ +SV+SAC  +  L LG+Q+ +RV  +GL  
Sbjct: 205 RFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLAL 264

Query: 470 DQIISTSLVDFYCKCG 485
           D  +  SLVD Y KC 
Sbjct: 265 DVCVGCSLVDMYAKCA 280



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL    +  ++  G+Q+H   LK G   S   I N L+ MY RCGN   A  +F+EM
Sbjct: 440 FASLLSGAASIGAMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEM 498

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             RN  SW +MI GF K G   ++L++F+ M     + N+ ++  ++S  +  G +   +
Sbjct: 499 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 558

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M + + I      +  M+    R+G   EA+     +       L  DA +  T+
Sbjct: 559 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP------LMADALVWRTL 612

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      E G+     IL    D D      L NL+   G +    ++   MKE
Sbjct: 613 LGACRVHGNTELGRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKIRKSMKE 668


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/511 (25%), Positives = 230/511 (45%), Gaps = 102/511 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C++ +   +G  LH   L  G L+    IA+ L+  Y + G    A  +FD MP R
Sbjct: 75  LLKACSSLNLFSLGLSLHQRILVSG-LSLDAYIASSLINFYAKFGFADVARKVFDFMPER 133

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           N   W ++I  + + G   ++  LF+ M ++                             
Sbjct: 134 NVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSA 193

Query: 102 ------NDFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                 +D +  N ++S + K   ++ +R LF+ M +R+ ++WNS++  Y + G+  E +
Sbjct: 194 ILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVL 253

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            L K +    ++  + D     +V+   A    L+ G+ +H  IL    D D+ + +SL+
Sbjct: 254 LLLKTMR---IQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLI 310

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            +Y K G+                               ++ A R+F+R+ D   V+W +
Sbjct: 311 VMYLKGGN-------------------------------IDIAFRMFERSLDKDVVLWTA 339

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MISG + N    +AL +F +M + GV    +T+ASV++AC+ LG    G  VHG+     
Sbjct: 340 MISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGY----- 394

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                                     +F      D    N+++T+++ CG ++ +  +F 
Sbjct: 395 --------------------------MFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFD 428

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            M  ++L+SWN+MI G +QNG   +AL LF  M       D  ++ S++  CA+   L L
Sbjct: 429 KMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHL 488

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G+ + + V   GL    ++ TSLVD YCKCG
Sbjct: 489 GKWIHSFVIRNGLRPCILVDTSLVDMYCKCG 519



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/499 (23%), Positives = 215/499 (43%), Gaps = 115/499 (23%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH--------KEK 90
           S + ++N +L MY +C N   +  LFD M +R+  SWN+++  + ++G+        K  
Sbjct: 200 SDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTM 259

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR------------------- 131
            +Q F   PQ    ++  ++S  A  GELK  R L   + R                   
Sbjct: 260 RIQGFEPDPQ----TFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLK 315

Query: 132 ----------------RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                           ++ + W +MI   V+NG A +A+ +F+++   L   ++     +
Sbjct: 316 GGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQM---LKFGVKSSTATM 372

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A+VI ACA L +   G  +H ++  + L  D    +SLV ++ KC               
Sbjct: 373 ASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKC--------------- 417

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                           G ++ +  VFD+    + V WN+MI+GY  N    +AL LF++M
Sbjct: 418 ----------------GHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEM 461

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R +    D+ T+ S+L  C+S G L  GK +H    + G+   ++V ++L+D Y K    
Sbjct: 462 RSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK---- 517

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                                      CG ++ A+  F  MP+  L+SW+++IVG   +G
Sbjct: 518 ---------------------------CGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHG 550

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIIS 474
               AL  +    +  ++ +     SV+S+C++   +E G  ++  +T   G+  +    
Sbjct: 551 KGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHH 610

Query: 475 TSLVDFYCKCGFIKMDEYY 493
             +VD   + G  +++E Y
Sbjct: 611 ACVVDLLSRAG--RVEEAY 627



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 165/379 (43%), Gaps = 68/379 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+ +AK G    AR +F+ MP RN + W S+I CY R G   EA  LF E+     + +
Sbjct: 110 LINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRR---QGI 166

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           Q  +  + +++   ++LA ++                  + GS++  LYG   D N +N 
Sbjct: 167 QPSSVTMLSLLFGVSELAHVQ-----------------CLHGSAI--LYGFMSDINLSNS 207

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           +L+M               Y  C  +  +R++FD       V WNS++S Y       E 
Sbjct: 208 MLSM---------------YGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEV 252

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           LLL   MR  G   D  T  SVLS  +S G L+ G+ +HG   +     D  V ++L   
Sbjct: 253 LLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSL--- 309

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
                                       I +Y   G I+ A  +F    +K ++ W +MI
Sbjct: 310 ----------------------------IVMYLKGGNIDIAFRMFERSLDKDVVLWTAMI 341

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            GL QNGS  +AL +F  M K  ++    ++ASVI+ACA + S  LG  V   +    L 
Sbjct: 342 SGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELP 401

Query: 469 SDQIISTSLVDFYCKCGFI 487
            D     SLV  + KCG +
Sbjct: 402 MDIATQNSLVTMHAKCGHL 420



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 16/202 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LLQ C +   +H+GK +H   ++ G L   + +   L+ MY +CG+   A   F++M
Sbjct: 473 IVSLLQGCASTGQLHLGKWIHSFVIRNG-LRPCILVDTSLVDMYCKCGDLDIAQRCFNQM 531

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P  +  SW+A+I G+   G  E +L+ ++   +     N   +  ++S  +  G ++   
Sbjct: 532 PSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGL 591

Query: 124 TLFNDMPRRNAIAWNSMIHCYV-----RNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            ++  M R   IA N   H  V     R G   EA  L+K+  SD V        +L  +
Sbjct: 592 NIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLD------VLGII 645

Query: 179 IGACADLAALEYGKQIHSHILV 200
           + AC      E G  I + IL+
Sbjct: 646 LDACRANGNNELGDTIANDILM 667


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 218/477 (45%), Gaps = 105/477 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     + +G+ +H   +K+G++   + + + L+ MY +C     A+ LFDEMP +
Sbjct: 112 VLKACGGLRRVVLGQMIHTCLVKEGLMVDIV-VGSSLVGMYAKCNEFECAVKLFDEMPDK 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSL-------------------------------------- 92
           +   WN +I  + + G  E++L                                      
Sbjct: 171 DVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIH 230

Query: 93  -QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            +L N   + + F    L+  + K G+L+ A  +F  MP +  +AWNSMI+ Y   G   
Sbjct: 231 KELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGI 290

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             ++LFK + S   E ++     L + + AC+  A L  GK +H +I+ N +  D  L S
Sbjct: 291 SCIQLFKRMYS---EGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNS 347

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL++L                               Y  CGK+  A  +F     T++V 
Sbjct: 348 SLMDL-------------------------------YFKCGKVESAETIFKLMPKTTTVS 376

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN MISGY++  +  +AL LF +M ++ V  DA T  SVL+ACS L  LE G+++H    
Sbjct: 377 WNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIV 436

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  + ++ +V  ALLD Y+K                               CG +E+A  
Sbjct: 437 ERNLGNNEVVMGALLDMYAK-------------------------------CGAVEEAFG 465

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +F+ +P + L+SW SMI     +G   EAL+LF  M + +++ D+ +  +++SAC++
Sbjct: 466 VFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSH 522



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 181/380 (47%), Gaps = 65/380 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  +AK  E + A  LF++MP ++   WN++I CY ++G   EA+R F  +     E  
Sbjct: 147 LVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEP- 205

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D+  + T I +CA L  L+ G++IH  ++ +G   DS + ++LV++            
Sbjct: 206 --DSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDM------------ 251

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                              Y  CG++  A  VF++  + + V WNSMI+GY    +    
Sbjct: 252 -------------------YGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISC 292

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           + LF +M   GV    +TL S L ACS    L  GK VHG+  +  +  D+ + S+L+D 
Sbjct: 293 IQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDL 352

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G                               ++E A+ IF+ MP  + +SWN MI
Sbjct: 353 YFKCG-------------------------------KVESAETIFKLMPKTTTVSWNVMI 381

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G    G   +AL LF  M+K  +  D  +  SV++AC+ +++LE G ++   +    L 
Sbjct: 382 SGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLG 441

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           +++++  +L+D Y KCG ++
Sbjct: 442 NNEVVMGALLDMYAKCGAVE 461



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 181/411 (44%), Gaps = 73/411 (17%)

Query: 90  KSLQLFNVMPQK-------ND-FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAW-NSM 140
           KSL+   V+ QK       ND +    LIS +        A+ +F+ +     I+  N +
Sbjct: 17  KSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGL 76

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           +  Y RN    EA+ LF +L       L+ D++   +V+ AC  L  +  G+ IH+ ++ 
Sbjct: 77  MAGYTRNCMYDEALGLFDKLMC--YPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVK 134

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            GL  D V+GSSLV +Y K                               C +   A ++
Sbjct: 135 EGLMVDIVVGSSLVGMYAK-------------------------------CNEFECAVKL 163

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD   D     WN++IS Y  + +  EAL  F  MRR G   D+ T+ + +S+C+ L  L
Sbjct: 164 FDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDL 223

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           + G+++H      G   D  V++AL+D Y K                             
Sbjct: 224 DRGREIHKELVNSGFRMDSFVSAALVDMYGK----------------------------- 254

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG++E A  +F  MPNK++++WNSMI G    G  I  + LF  M    ++    +L 
Sbjct: 255 --CGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLT 312

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           S + AC+  + L  G+ V   +    +  D  +++SL+D Y KCG ++  E
Sbjct: 313 STLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAE 363



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 16/234 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++  G+++H   +++ + N+ + +   LL MY +CG   +A  +F  +P R
Sbjct: 415 VLAACSQLAALEKGREIHNLIVERNLGNNEV-VMGALLDMYAKCGAVEEAFGVFKCLPER 473

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTARTLF 126
           +  SW +MI  +   G   ++L+LF  M Q N      ++  ++S  + AG +      F
Sbjct: 474 DLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHF 533

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M     I      ++ +I    R G   EA  + +  N ++ +  Q    +L+T+  A
Sbjct: 534 NQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQS-NPEISDDFQ----LLSTLFSA 588

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     L+ G +I  +++    D DS     L N+Y   G ++    V + MK+
Sbjct: 589 CRLHKNLDLGVEIAENLIDKDPD-DSSTYIILSNMYASFGKWDEVRMVRSKMKD 641


>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
          Length = 818

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 231/516 (44%), Gaps = 109/516 (21%)

Query: 11  LLQSCNTHHSIHVGKQLH--LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           ++++C   +S+ +G+ +H  + F+        + + + L++ Y   G   DA  LFD MP
Sbjct: 153 VIKACGGLNSVALGRVVHDKIQFMG---FELDVFVGSSLIKFYSENGCIHDARYLFDRMP 209

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS----------------- 105
            ++   WN M+ G++K G  + +  +F  M      P    F+                 
Sbjct: 210 SKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ 269

Query: 106 ----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N L++ +AK G L  AR LF+ MP+ + + WN MI  YV+NGF
Sbjct: 270 LHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGF 329

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA  LF E+ S     ++ D+   ++ +   ++ A L  GK+IH +I+ NG+  D  L
Sbjct: 330 MDEASCLFHEMIS---AGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFL 386

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            S+L+++Y K                               C  +  A ++FD+ T    
Sbjct: 387 KSALIDIYFK-------------------------------CRDVEMAHKIFDQRTPVDI 415

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V+  +MISGY+ N  +  AL +F  + +  +  ++ TLASVL AC+ L  L  GK++HGH
Sbjct: 416 VVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGH 475

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K G      V SA++D Y+K G    A + F  +   D +  N+MIT  S  G+ E  
Sbjct: 476 ILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPE-- 533

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                                        EA+DLF  M     + D  S+++ +SACAN+
Sbjct: 534 -----------------------------EAIDLFRQMGMAGTKYDCVSISAALSACANL 564

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +L  G+++ A +      SD    ++L+D Y KCG
Sbjct: 565 PALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCG 600



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 224/477 (46%), Gaps = 81/477 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L  C +   I+ G QLH   +  G L    P+AN LL MY +CG+  DA  LFD M
Sbjct: 251 FACVLSVCASEIMINFGSQLHGLVVSSG-LEMDSPVANTLLAMYAKCGHLFDARRLFDMM 309

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS---------------- 105
           P+ +  +WN MI G+++ G  +++  LF+ M      P    FS                
Sbjct: 310 PKTDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGK 369

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + LI  + K  +++ A  +F+     + +   +MI  YV NG
Sbjct: 370 EIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNG 429

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A+ +F+ L   L ER++ ++  LA+V+ ACA LAAL  GK++H HIL NG      
Sbjct: 430 MNNNALEIFRWL---LQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCY 486

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+++++Y K                               CGK++ A + F   +   
Sbjct: 487 VGSAIMDMYAK-------------------------------CGKLDLAHQTFIGISXKD 515

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WNSMI+    N +  EA+ LF +M   G   D  ++++ LSAC++L  L +GK++H 
Sbjct: 516 AVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHA 575

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              +     D+   SAL+D YSK G    AC++F  ++  + +  N++I  Y + GR++D
Sbjct: 576 FMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYGNHGRLKD 635

Query: 389 AKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLF-CNMNKLDL--RMDKFS 438
           + ++F  M    +    +++ ++I      G   E +  F C   +L +  RM+ ++
Sbjct: 636 SLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYA 692



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 221/523 (42%), Gaps = 105/523 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D+    L  +LQ+C     +  G+Q H   L  GI  + + +  +LL MY+ CG   DA 
Sbjct: 43  DSLAPQLVSILQTCTDPSGLSHGRQAHAQMLVNGIGYNGI-LGTKLLGMYVLCGAFLDAK 101

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW--------- 106
            +F ++       WN MI GF  +G  + +L  +        +P K  F +         
Sbjct: 102 NIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLN 161

Query: 107 ------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                   + LI  +++ G +  AR LF+ MP ++ + WN M++
Sbjct: 162 SVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLN 221

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            YV+NG    A  +F E+          ++   A V+  CA    + +G Q+H  ++ +G
Sbjct: 222 GYVKNGDWDNATGVFMEMRR---TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSG 278

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L+ DS + ++L+ +Y KCG    A ++ +MM + D    + +ISGY   G M+       
Sbjct: 279 LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMD------- 331

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                                   EA  LFH+M   G+  D+ T +S L   S    L  
Sbjct: 332 ------------------------EASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQ 367

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++H +  + GV  DV + SAL+D Y K                               
Sbjct: 368 GKEIHCYIIRNGVSLDVFLKSALIDIYFK------------------------------- 396

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           C  +E A  IF       ++   +MI G   NG    AL++F  + +  +R +  +LASV
Sbjct: 397 CRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASV 456

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + ACA +++L LG+++   +   G      + ++++D Y KCG
Sbjct: 457 LPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCG 499



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 174/381 (45%), Gaps = 79/381 (20%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++  GK++H + ++ G+ +  + + + L+ +Y +C +   A  +FD+    +     AMI
Sbjct: 364 TLRQGKEIHCYIIRNGV-SLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMI 422

Query: 80  EGFMKLGHKEKSLQLFNVMPQK-------------------------NDFSWNMLISG-- 112
            G++  G    +L++F  + Q+                          +   ++L +G  
Sbjct: 423 SGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG 482

Query: 113 ------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                       +AK G+L  A   F  +  ++A+ WNSMI    +NG   EA+ LF+++
Sbjct: 483 GSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQM 542

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
               +   + D   ++  + ACA+L AL YGK+IH+ ++                     
Sbjct: 543 G---MAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR-------------------- 579

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G F S           D F  SALI  Y+ CG ++ A RVFD   + + V WNS+I+ Y 
Sbjct: 580 GAFRS-----------DLFAESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYG 628

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC---KVGVID 337
           ++    ++L LFH M  +G+  D  T  +++SAC   G ++ G  +H   C   ++G++ 
Sbjct: 629 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMA 686

Query: 338 DVIVASALLDTYSKRGMPSDA 358
            +   + ++D + + G  ++A
Sbjct: 687 RMEHYACMVDLFGRAGRLNEA 707



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 49/273 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C    ++ +GK+LH H LK G   S   + + ++ MY +CG    A   F  +
Sbjct: 453 LASVLPACAGLAALTLGKELHGHILKNGHGGSCY-VGSAIMDMYAKCGKLDLAHQTFIGI 511

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
             ++   WN+MI    + G  E+++ LF  M                             
Sbjct: 512 SXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGK 571

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      + + F+ + LI  ++K G L  A  +F+ M  +N ++WNS+I  Y  +G
Sbjct: 572 EIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYGNHG 631

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN---GLDF 205
             ++++ LF  +   L + +Q D      +I AC     ++ G  IH    +    G+  
Sbjct: 632 RLKDSLNLFHGM---LGDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMA 686

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPD 237
                + +V+L+G+ G  N A  ++N M   PD
Sbjct: 687 RMEHYACMVDLFGRAGRLNEAFGMINSMPFSPD 719



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 32/191 (16%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
           A  L S+L  C+    L HG+Q H      G+                            
Sbjct: 46  APQLVSILQTCTDPSGLSHGRQAHAQMLVNGI---------------------------- 77

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
               Y+ IL   ++ +Y  CG   DAK+IF  +       WN MI G +  G    AL  
Sbjct: 78  ---GYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLF 134

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           +  M       DK++   VI AC  ++S+ LG  V  ++  +G + D  + +SL+ FY +
Sbjct: 135 YFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSE 194

Query: 484 CGFIKMDEYYL 494
            G I  D  YL
Sbjct: 195 NGCIH-DARYL 204


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 209/478 (43%), Gaps = 103/478 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C +   +  GK LH   +K G+ +  + I   L+ MY +CGN  D           
Sbjct: 100 VLKACASLSIVKHGKALHAESIKNGV-DFDVMIGTSLVCMYAKCGNVVD----------- 147

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                               S ++F+ MP++N  +WN +I G+   G+ K+A  LF  M 
Sbjct: 148 --------------------SRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS 187

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R A+ W  MI  + R+G    A R F ++ S+L                          
Sbjct: 188 IRTAVTWIEMIDGFARSGDTETARRFFDDVPSELR------------------------- 222

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
                          + V  + +V+ Y +  +  +A +V   M + + F  S++ISGY  
Sbjct: 223 ---------------NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCK 267

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + +AR +FDR    + V WNS+ISGY  N    EAL  F KM+  G   D  T+ASV
Sbjct: 268 KGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASV 327

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSACS LG L+ GK++H      G+  +  V + L+D Y+K                   
Sbjct: 328 LSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAK------------------- 368

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG + +A+ IF  M +++   WNSMI G + +G   EAL+ F  M   
Sbjct: 369 ------------CGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDS 416

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
               D+ +  SV+SACA+   +  G ++F+R+   GL +       L+D   + G IK
Sbjct: 417 HEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIK 474



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 160/323 (49%), Gaps = 36/323 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           ++  + R G+   A   FD++P   RN  +W  M++G+ +    E + ++F  MPQ+N F
Sbjct: 197 MIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFF 256

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +W+ +ISG+ K G +K AR++F+ +P RN + WNS+I  Y +NGF+ EA+  F ++ +  
Sbjct: 257 AWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQA-- 314

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            E  + D   +A+V+ AC+ L  L+ GK+IH  +   G+  +  + + LV++Y KCGD  
Sbjct: 315 -EGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLA 373

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
           +A  +   M   +  C +++ISG+A  G                               +
Sbjct: 374 NARLIFEGMAHRNRACWNSMISGFAIHG-------------------------------Q 402

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL  F +M  +    D  T  SVLSAC+  GF+  G ++     K G+   +     
Sbjct: 403 SKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGC 462

Query: 345 LLDTYSKRGMPSDACKLFSELKV 367
           L+D   + G   +A  L   + V
Sbjct: 463 LIDLLGRAGRIKEAYDLIKRMPV 485



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 175/349 (50%), Gaps = 41/349 (11%)

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           W  +I  Y+  G  REA+ ++  L    V  L     +L     ACA L+ +++GK +H+
Sbjct: 63  WCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVLK----ACASLSIVKHGKALHA 118

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
             + NG+DFD ++G+SLV                         C+      YA CG + D
Sbjct: 119 ESIKNGVDFDVMIGTSLV-------------------------CM------YAKCGNVVD 147

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           +R+VFD   + ++V WN+MI GY+ N +   A+LLF KM     +  A T   ++   + 
Sbjct: 148 SRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS----IRTAVTWIEMIDGFAR 203

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
            G  E  ++          + +V+  + ++D Y++      A ++F  +   +    ++M
Sbjct: 204 SGDTETARRFFDDVPSE--LRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSM 261

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           I+ Y   G +++A+ IF  +P ++L++WNS+I G +QNG   EAL+ F  M       D+
Sbjct: 262 ISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDE 321

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++ASV+SAC+ +  L+ G+++   +   G+  +Q +   LVD Y KCG
Sbjct: 322 VTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCG 370



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 49/279 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A +L +C+    +  GK++H     KGI LN    + N L+ MY +CG+  +A L+F+ 
Sbjct: 324 IASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQF--VLNGLVDMYAKCGDLANARLIFEG 381

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTA 122
           M  RN   WN+MI GF   G  +++L+ F  M       ++ ++  ++S  A  G +   
Sbjct: 382 MAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAG 441

Query: 123 RTLFNDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             +F+ M +         +  +I    R G  +EA  L K +       ++ +  +   +
Sbjct: 442 LEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMP------VKPNDVVWGAL 495

Query: 179 IGACADLAALEYGKQIHSHI------LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           +GAC     +E   ++   I      + +G D   VL   L N+Y     +  A ++   
Sbjct: 496 LGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVL---LSNIYAASDRWEKAEKM--- 549

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                               +M  A + F +T+  SS+M
Sbjct: 550 --------------------RMEMANKGFQKTSGCSSIM 568



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS-VISACANISSLELGEQV 458
           SL +W  +I      G+P EAL ++  + +  + +    +A  V+ ACA++S ++ G+ +
Sbjct: 59  SLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYL--LGVAPLVLKACASLSIVKHGKAL 116

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCG 485
            A     G+D D +I TSLV  Y KCG
Sbjct: 117 HAESIKNGVDFDVMIGTSLVCMYAKCG 143


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/530 (26%), Positives = 228/530 (43%), Gaps = 113/530 (21%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           MDTR   L  LL++C    S+  GK +H   +  G+ N    +   L+  Y+ C     A
Sbjct: 1   MDTR--KLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIF-LCKTLINQYLSCHLYDHA 57

Query: 61  LLLFDEMPRRNCFS-WNAMIEGFMKLGHKEKSLQLFNVM---PQKNDFSWNM-------- 108
             +FD M      S WN ++ G+ K     ++L+LF  +   P     S+          
Sbjct: 58  KCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACG 117

Query: 109 -----------------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                                        L+  + K    + A  LFN+MP ++   WN+
Sbjct: 118 GLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNT 177

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERL--QCDAFILATVIGACADLAALEYGKQIHSH 197
           +I CY ++G  ++A+  F      L+ R   + ++  + T I +CA L  L  G +IH  
Sbjct: 178 VISCYYQSGNFKDALEYF-----GLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEE 232

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           ++ +G   DS + S+LV++                               Y  CG +  A
Sbjct: 233 LINSGFLLDSFISSALVDM-------------------------------YGKCGHLEMA 261

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
             +F++    + V WNSMISGY    +    + LF +M   GV    +TL+S++  CS  
Sbjct: 262 IEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRS 321

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             L  GK VHG+  +  +  DV V S+L+D Y K                          
Sbjct: 322 ARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFK-------------------------- 355

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                CG++E A+ IF+ +P   ++SWN MI G    G   EAL LF  M K  +  D  
Sbjct: 356 -----CGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAI 410

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  SV++AC+ +++LE G+++   +    LD+++++  +L+D Y KCG +
Sbjct: 411 TFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAV 460



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 231/526 (43%), Gaps = 107/526 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C   H   +GK +H   +K G++   + + + L+ MY +C     A+ LF+EMP +
Sbjct: 112 VFKACGGLHRYVLGKMIHTCLIKTGLMMDIV-VGSSLVGMYGKCNAFEKAIWLFNEMPEK 170

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK----------------------- 101
           +   WN +I  + + G+ + +L+ F +M      P                         
Sbjct: 171 DVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIH 230

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     + F  + L+  + K G L+ A  +F  MP++  +AWNSMI  Y   G   
Sbjct: 231 EELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDII 290

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             ++LFK + +   E ++     L+++I  C+  A L  GK +H + + N +        
Sbjct: 291 SCIQLFKRMYN---EGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRI-------- 339

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                  +PD F  S+L+  Y  CGK+  A ++F     +  V 
Sbjct: 340 -----------------------QPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVS 376

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN MISGY++  +  EAL LF +MR++ V  DA T  SVL+ACS L  LE GK++H    
Sbjct: 377 WNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLII 436

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  + ++ +V  ALLD Y+K G   +A  +F  L   D +   +MIT Y S         
Sbjct: 437 EKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGS--------- 487

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                 +G    AL+LF  M + +++ D+ +  +++SAC +   
Sbjct: 488 ----------------------HGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGL 525

Query: 452 LELGEQVFAR-VTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++ G   F + + + G+       + L+D   + G +  + Y ++Q
Sbjct: 526 VDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLH-EAYEILQ 570



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 190/432 (43%), Gaps = 81/432 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC     ++ G ++H   +  G L  +  I++ L+ MY +CG+   A+ +F++MP++ 
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSF-ISSALVDMYGKCGHLEMAIEIFEQMPKKT 272

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM------P-------------------------- 99
             +WN+MI G+   G     +QLF  M      P                          
Sbjct: 273 VVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHG 332

Query: 100 -------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                  Q + F  + L+  + K G+++ A  +F  +P+   ++WN MI  YV  G   E
Sbjct: 333 YTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFE 392

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF E+    VE    DA    +V+ AC+ LAALE GK+IH+ I+   LD + V+   
Sbjct: 393 ALGLFSEMRKSYVES---DAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVV--- 446

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                       + AL+  YA CG +++A  VF        V W
Sbjct: 447 ----------------------------MGALLDMYAKCGAVDEAFSVFKCLPKRDLVSW 478

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
            SMI+ Y S+     AL LF +M ++ V  D     ++LSAC   G ++ G         
Sbjct: 479 TSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMIN 538

Query: 333 V-GVIDDVIVASALLDTYSKRGMPSDACKLFSE-LKVYDTILLNTMITVYSSC---GRIE 387
           V G+I  V   S L+D   + G   +A ++  +  ++ D + L  + T++S+C     I+
Sbjct: 539 VYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVEL--LSTLFSACRLHRNID 596

Query: 388 DAKHIFRTMPNK 399
               I RT+ +K
Sbjct: 597 LGAEIARTLIDK 608



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 16/234 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++  GK++H   ++K + N+ + +   LL MY +CG   +A  +F  +P+R
Sbjct: 415 VLTACSQLAALEKGKEIHNLIIEKKLDNNEV-VMGALLDMYAKCGAVDEAFSVFKCLPKR 473

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTARTLF 126
           +  SW +MI  +   GH   +L+LF  M Q N      ++  ++S    AG +      F
Sbjct: 474 DLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYF 533

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M     I      ++ +I    R G   EA  + ++ N ++ +    D  +L+T+  A
Sbjct: 534 NQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ-NPEIRD----DVELLSTLFSA 588

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     ++ G +I +  L++    DS     L N+Y     ++    V + MKE
Sbjct: 589 CRLHRNIDLGAEI-ARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKE 641


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 246/523 (47%), Gaps = 110/523 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP- 68
           LL+SC    +  +GK +H   ++ G+ L+S   + N L+ +Y +CG+   A L+F+ M  
Sbjct: 50  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSV--VLNTLISLYSKCGDTETARLIFEGMGN 107

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK------------NDFSW-NML 109
           +R+  SW+AM+  F     + +++  F         P +             +++W   +
Sbjct: 108 KRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEI 167

Query: 110 ISGFA----------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
           I GF                        +G+L +A  +F+ MP RN + W  MI  + + 
Sbjct: 168 IYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQL 227

Query: 148 GFAREAVRLFKELN-SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           G AR+A+ LF ++  S  V     D F  ++V+ AC +L  L  GKQ+HS ++  GL  D
Sbjct: 228 GCARDAIDLFLDMELSGYVP----DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALD 283

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             +G SLV++Y KC                            A  G ++D+R+VF++  +
Sbjct: 284 VCVGCSLVDMYAKC----------------------------AADGSVDDSRKVFEQMPE 315

Query: 267 TSSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            + + W ++I+ Y+ + E D EA+ LF KM    +  +  + +SVL AC +L     G+Q
Sbjct: 316 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 375

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           V+ +A K+G+     V ++L+  Y++ G                               R
Sbjct: 376 VYSYAVKLGIASVNCVGNSLISMYARSG-------------------------------R 404

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +EDA+  F  +  K+L+S+N+++ G ++N    EA  LF  +    + +  F+ AS++S 
Sbjct: 405 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 464

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            A+I ++  GEQ+  R+   G  S+Q I  +L+  Y +CG I+
Sbjct: 465 AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 507



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 235/496 (47%), Gaps = 109/496 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDE 66
            A ++++C+  +   VG+ ++   +K G L + + +   L+ M+++  G+   A  +FD+
Sbjct: 149 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 208

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNM------------ 108
           MP RN  +W  MI  F +LG    ++ LF        +P +  +S  +            
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 268

Query: 109 ---------------------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                L+  +AK    G +  +R +F  MP  N ++W ++I  Y
Sbjct: 269 KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 328

Query: 145 VRNGFA-REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           V++G   +EA+ LF ++ S     ++ + F  ++V+ AC +L+    G+Q++S+ +    
Sbjct: 329 VQSGECDKEAIELFCKMISG---HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK--- 382

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
                LG + VN  G                       ++LIS YA  G+M DAR+ FD 
Sbjct: 383 -----LGIASVNCVG-----------------------NSLISMYARSGRMEDARKAFDI 414

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + V +N+++ GY  N +  EA LLF+++   G+   A T AS+LS  +S+G +  G
Sbjct: 415 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKG 474

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +Q+HG                LL    K G  S+ C            + N +I++YS C
Sbjct: 475 EQIHGR---------------LL----KGGYKSNQC------------ICNALISMYSRC 503

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G IE A  +F  M ++++ISW SMI G +++G    AL++F  M +   + ++ +  +V+
Sbjct: 504 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 563

Query: 444 SACANISSLELGEQVF 459
           SAC+++  +  G++ F
Sbjct: 564 SACSHVGMISEGQKHF 579



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 211/456 (46%), Gaps = 75/456 (16%)

Query: 42  PIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
           P+ NRL++  +  G    A    D M ++N           +K   + ++ QL  ++ +K
Sbjct: 11  PLKNRLIRQ-LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRK 69

Query: 102 --------NDFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFARE 152
                   +    N LIS ++K G+ +TAR +F  M  +R+ ++W++M+ C+  N    +
Sbjct: 70  LMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQ 129

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLGS 211
           A+  F ++   L      + +  A VI AC++      G+ I+  ++  G L+ D  +G 
Sbjct: 130 AIWTFLDM---LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGC 186

Query: 212 SLVNLYGK-CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
            L++++ K  GD  SA +V + M E +    + +I+ +A  G   D              
Sbjct: 187 ELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARD-------------- 232

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
                            A+ LF  M  +G + D  T +SVLSAC+ LG L  GKQ+H   
Sbjct: 233 -----------------AIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRV 275

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            ++G+  DV V  +L+D Y+K       C                     ++ G ++D++
Sbjct: 276 IRLGLALDVCVGCSLVDMYAK-------C---------------------AADGSVDDSR 307

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGS-PIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +F  MP  +++SW ++I    Q+G    EA++LFC M    +R + FS +SV+ AC N+
Sbjct: 308 KVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 367

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           S    GEQV++    +G+ S   +  SL+  Y + G
Sbjct: 368 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG 403



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL    +  ++  G+Q+H   LK G   S   I N L+ MY RCGN   A  +F+EM
Sbjct: 458 FASLLSGAASIGAMGKGEQIHGRLLKGG-YKSNQCICNALISMYSRCGNIEAAFQVFNEM 516

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             RN  SW +MI GF K G   ++L++F+ M     + N+ ++  ++S  +  G +   +
Sbjct: 517 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 576

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M + + I      +  M+    R+G   EA+     +       L  DA +  T+
Sbjct: 577 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP------LMADALVWRTL 630

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      E G+     IL    D D      L NL+   G +    ++   MKE
Sbjct: 631 LGACRVHGNTELGRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKIRKSMKE 686


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 234/517 (45%), Gaps = 110/517 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA--NRLLQMYMRCGNPTDALLLFDEMP 68
           +L  C     +  G+Q+H   ++   L S L I   N  + MY++CG    A+  F  M 
Sbjct: 219 ILSGCEAPSLLEQGRQIHALVVESS-LESHLDIGVLNLTINMYVKCGCLDGAVQTFARMK 277

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISG------------ 112
           RR+  SW  MI  + + G    SLQLF  M       N  ++  ++SG            
Sbjct: 278 RRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQ 337

Query: 113 -----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMI-HCYVRNG 148
                                  +++    + +R+LF+ M  R++++W+++I  C   + 
Sbjct: 338 IHALVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDS 397

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             R+A+ L++ +   L E +      L+ V+ AC  LA L+ GK +H+H++ +GL+ D +
Sbjct: 398 HCRDALPLYRSM---LHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGD-L 453

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G SLVN+Y K                               CG + +AR+VFDR  + S
Sbjct: 454 VGISLVNMYAK-------------------------------CGTVGEARKVFDRINNRS 482

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            ++WNSMI+ Y    +  EAL LF +M+  GV  D  T  +VL+AC +   LE+G+ +H 
Sbjct: 483 RILWNSMITAY-QEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHT 541

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                G   DV VA+AL + Y+K                               CG + +
Sbjct: 542 RIVDSGFAADVRVATALFNMYAK-------------------------------CGSLGE 570

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F +M  + ++SWN+MI    Q      A+ L   M    +R DK +  S+++AC++
Sbjct: 571 ARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSD 630

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            + L  G Q+ + +    L++D ++ T L+  Y  CG
Sbjct: 631 PNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCG 667



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 140/520 (26%), Positives = 228/520 (43%), Gaps = 112/520 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C     +  G+Q+H   ++   L S + +AN LL MY RC +  D+  LFD M  R
Sbjct: 322 ILSGCEAPSLLEQGRQIHALVVESS-LESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVR 380

Query: 71  NCFSWNAMIEGFMKL-GHKEKSLQLF------NVMPQ----------------------- 100
           +  SW+ +I    +   H   +L L+       VMP+                       
Sbjct: 381 DSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLV 440

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                    + D     L++ +AK G +  AR +F+ +  R+ I WNSMI  Y       
Sbjct: 441 HAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQEKD-PH 499

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+E+     E +  D     TV+ AC + A LE G+ IH+ I+ +G   D  + +
Sbjct: 500 EALHLFREMQP---EGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVAT 556

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L N+Y K                               CG + +AR VFD       V 
Sbjct: 557 ALFNMYAK-------------------------------CGSLGEARGVFDSMVFRDVVS 585

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI+ Y+   +   A+ L   M+  G+  D +T  S+L+ACS    L  G+Q+H    
Sbjct: 586 WNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIA 645

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +  + +D+++ + L                               IT+Y++CG + +A+ 
Sbjct: 646 ESRLENDIVMVTGL-------------------------------ITMYANCGSLNNARE 674

Query: 392 IFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           IF  +       ++ L  W SMI    Q+G   +AL+L+  M+   +  D+ +  SV++A
Sbjct: 675 IFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNA 734

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           CA++S L  G+ + ARV   GL +D  ++ S+V  Y KCG
Sbjct: 735 CAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCG 774



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 232/525 (44%), Gaps = 99/525 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C +   +  GK +H H ++ G+    + I+  L+ MY +CG   +A  +FD +
Sbjct: 421 LSMVLEACGSLAELKGGKLVHAHVIESGLEGDLVGIS--LVNMYAKCGTVGEARKVFDRI 478

Query: 68  PRRNCFSWNAMIEGFMKLGHKE-----KSLQLFNVMPQKNDF------------------ 104
             R+   WN+MI  + +    E     + +Q   V P +  F                  
Sbjct: 479 NNRSRILWNSMITAYQEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRT 538

Query: 105 -SWNMLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
               ++ SGF              AK G L  AR +F+ M  R+ ++WN+MI  YV+   
Sbjct: 539 IHTRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRD 598

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
              A+ L   +    +E ++ D     +++ AC+D   L  G+QIHS I  + L+ D V+
Sbjct: 599 GEGAISLCWAMQ---LEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVM 655

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            + L+ +Y  CG  N+A ++ + +              ++N  + +  R +F        
Sbjct: 656 VTGLITMYANCGSLNNAREIFDNI--------------FSNSRQHH--RDLF-------- 691

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            +W SMI+ Y  + E  +AL L+ +M    V  D  T  SVL+AC+ L  L  G+ +H  
Sbjct: 692 -LWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHAR 750

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  DV VA++++  Y K G   +A  +F + K  D  L   +I  Y+  G  E A
Sbjct: 751 VMRRGLATDVAVANSIVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQA 810

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             IFR                L Q+G                + +   +  +++SAC+++
Sbjct: 811 LWIFRR---------------LRQDG----------------IELSNLTFVAMLSACSHV 839

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
             +E G + FA +  +G++ +    + LVD   + G +   E +L
Sbjct: 840 GLIEEGCEFFASMAELGIEPNMEHHSCLVDLLARAGHLHTAEEFL 884



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 217/518 (41%), Gaps = 106/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++  GK +    L    L   + + N  + MY++CG    A+  F  M RR
Sbjct: 16  LLTACTKLGALEEGKLIQ-DRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQTFARMKRR 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTL- 125
           +  SW  MI  + + G    SLQLF  M       N  ++  ++SG      L+  R + 
Sbjct: 75  DVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIH 134

Query: 126 -----------------------------------FNDMPRRNAIAWNSMIHCYVRNGFA 150
                                              F  M RR+ ++W  MI  Y ++G  
Sbjct: 135 ALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYSQDGKF 194

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
             +++LF+E+   L+E    ++    +++  C   + LE G+QIH+ ++      +S L 
Sbjct: 195 SLSIQLFREM---LLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVV------ESSLE 245

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           S L        D    N  +NM               Y  CG ++ A + F R      V
Sbjct: 246 SHL--------DIGVLNLTINM---------------YVKCGCLDGAVQTFARMKRRDVV 282

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W  MI  Y  + + + +L LF +M   G   ++ T  S+LS C +   LE G+Q+H   
Sbjct: 283 SWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALV 342

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +  +   V+VA++LL  YS+                               C   ED++
Sbjct: 343 VESSLESHVVVANSLLGMYSR-------------------------------CRSWEDSR 371

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPI-EALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +F  M  +  +SW+++I+  S+  S   +AL L+ +M    +     +L+ V+ AC ++
Sbjct: 372 SLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSL 431

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + L+ G+ V A V   GL+ D ++  SLV+ Y KCG +
Sbjct: 432 AELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTV 468



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 126/299 (42%), Gaps = 50/299 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM--- 67
           LL +C+  + +  G+Q+H  ++ +  L + + +   L+ MY  CG+  +A  +FD +   
Sbjct: 624 LLNACSDPNRLVDGRQIH-SWIAESRLENDIVMVTGLITMYANCGSLNNAREIFDNIFSN 682

Query: 68  ---PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------NDFS 105
                R+ F W +MI  + + G   K+L+L+  M  +                   +D  
Sbjct: 683 SRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLR 742

Query: 106 W--------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                                N ++  + K G    A  +F     ++   W ++I  Y 
Sbjct: 743 QGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYA 802

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           R+G   +A+ +F+ L  D +E           ++ AC+ +  +E G +  + +   G++ 
Sbjct: 803 RHGHGEQALWIFRRLRQDGIE---LSNLTFVAMLSACSHVGLIEEGCEFFASMAELGIEP 859

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDR 263
           +    S LV+L  + G  ++A + L+ M    +   L+AL++     G +  ARRV ++
Sbjct: 860 NMEHHSCLVDLLARAGHLHTAEEFLSRMPVAANTIVLTALLAACRVHGDVERARRVAEK 918



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 31/190 (16%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M R G+  D   + ++L+AC+ LG LE GK +        +  D+ V +  ++ Y K G 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A + F+ +K  D +    MI  YS  G+   +  +FR M              L + 
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREM--------------LLEG 106

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
            +P                 +  +  S++S C   S LE G Q+ A V    L+S  +++
Sbjct: 107 TAP-----------------NSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVA 149

Query: 475 TSLVDFYCKC 484
            SL+  Y +C
Sbjct: 150 NSLLGMYSRC 159



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 70/130 (53%), Gaps = 6/130 (4%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +++ +L +C     +  G+ +H   +++G L + + +AN ++ MY +CG+  +A ++
Sbjct: 725 RVTFIS-VLNACAHLSDLRQGQAIHARVMRRG-LATDVAVANSIVFMYGKCGSFDEASIV 782

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGEL 119
           F++   ++   W A+I  + + GH E++L +F  + Q     ++ ++  ++S  +  G +
Sbjct: 783 FEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACSHVGLI 842

Query: 120 KTARTLFNDM 129
           +     F  M
Sbjct: 843 EEGCEFFASM 852


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 228/500 (45%), Gaps = 106/500 (21%)

Query: 29  LHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           +H L + I   S + + + L+  Y    +  +A  +F+EM  R+  SW +MI    + GH
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGH 202

Query: 88  KEKSLQLFN------VMPQK----------------NDFSW-----------------NM 108
            +K L++ +      ++P K                ++  W                 N 
Sbjct: 203 WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNA 262

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LIS + K G L  A   F  MP R   +WN++I  +V+N   +EA+R+F+E+   L+  +
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM---LLHGV 319

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D   L +V+ ACA L  L  G  +HS+I  NG+  D++L +SL+N+Y K         
Sbjct: 320 TPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK--------- 370

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                 CG M  A RVF   T    V W  M+ GY+  ++ T A
Sbjct: 371 ----------------------CGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMA 408

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             LF +M+   V+     L S+LSACS LG L+ G+++H +  ++ V  D+ + SAL+D 
Sbjct: 409 FNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDM 468

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K G    A ++F                               R M +K  +SWN+MI
Sbjct: 469 YAKCGCIDTASEIF-------------------------------RKMQHKQTLSWNAMI 497

Query: 409 VGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
            GL+ NG   EA++LF  M +L D + D  +L +V+ ACA++  ++ G + F  ++ +G+
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGV 557

Query: 468 DSDQIISTSLVDFYCKCGFI 487
             D      +VD   + G +
Sbjct: 558 VPDTEHYGCIVDLLGRAGML 577



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 193/437 (44%), Gaps = 76/437 (17%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN------------------- 133
           ++F+ M Q N F WN +I G++     + A  +F +M RR                    
Sbjct: 73  KVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFA 132

Query: 134 AIAWNS---MIHCYVRN-GFARE------------AVRLFKELNSDLVERLQCDAFILAT 177
            + W S    IH  VR  GF  +            A R  +E +    E  + D     +
Sbjct: 133 GLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTS 192

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-------NQVL 230
           +I ACA     +   ++ S +   G+  + V   ++++L   CG   +        NQV 
Sbjct: 193 MISACAQCGHWDKVLKMLSEMQAEGIIPNKV---TIISLLSACGQTQAVDEGRWVYNQVG 249

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
               E D    +ALIS Y  CG ++DA   F       +  WN++I G++ N+E  EAL 
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +F +M  +GV  D  TL SVLSAC+ LG L  G  VH +    G+               
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGI--------------- 354

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                   C         D IL N++I +Y+ CG +  A+ +F+TM  K ++SW  M+ G
Sbjct: 355 -------CC---------DNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCG 398

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
             +      A +LF  M   ++   + +L S++SAC+ + +L+ G ++ + +  + +  D
Sbjct: 399 YVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKD 458

Query: 471 QIISTSLVDFYCKCGFI 487
             + ++LVD Y KCG I
Sbjct: 459 LCLESALVDMYAKCGCI 475



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 167/380 (43%), Gaps = 68/380 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L++  A   +++ AR +F+ M + NA  WN MI  Y      R+A+ +F+E+    V   
Sbjct: 58  LLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSP- 116

Query: 169 QCDAFILATVIGACADLAALEY---GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             D + +A V+ A A  A L++   G  IH+ +   G   D  + S LVN YG    F S
Sbjct: 117 --DNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGA---FRS 171

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                       + +A +VF+   +   V W SMIS        
Sbjct: 172 ----------------------------VEEASKVFEEMYERDVVSWTSMISACAQCGHW 203

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            + L +  +M+  G++ +  T+ S+LSAC     ++ G+ V+    K G+  DV + +AL
Sbjct: 204 DKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNAL 263

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
                                          I++Y+ CG + DA   F+ MP +   SWN
Sbjct: 264 -------------------------------ISMYTKCGCLSDALEAFQAMPARYTKSWN 292

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           ++I G  QN    EAL +F  M    +  D  +L SV+SACA +  L  G  V + +   
Sbjct: 293 TLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDN 352

Query: 466 GLDSDQIISTSLVDFYCKCG 485
           G+  D I++ SL++ Y KCG
Sbjct: 353 GICCDNILTNSLINMYAKCG 372


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 203/413 (49%), Gaps = 35/413 (8%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G    ALL+   +      S N ++  +  L     SL  F+ +P KN  S+N L++ 
Sbjct: 46  RLGAAVHALLVKTALTHHTLLS-NRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAA 104

Query: 113 FAKA-GELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL---VE 166
            A+  G L  A  L + MP   RN +++N++I    R+G   EA+R+F +L  D     +
Sbjct: 105 LARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQ 164

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           ++  D F + +   ACA L    + +++H  ++V+G++   ++ +++V+ Y K G    A
Sbjct: 165 QVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDA 224

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V + M   D    +++I+GY     ++DA +VFD      ++ W ++ISG+  N E+ 
Sbjct: 225 RGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEE 284

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            AL LF +M   GV+     L S L AC+ +G +  GK+VHG   +              
Sbjct: 285 IALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILR-------------- 330

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                R + SD   +F         + N +I +YS CG +  A  +F  M  + +ISWNS
Sbjct: 331 -----RSIGSDPFNVF---------IHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNS 376

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           M+ G S NG   ++L +F  M K +++    +  +V++AC++   +  G ++ 
Sbjct: 377 MVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRIL 429



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 187/383 (48%), Gaps = 41/383 (10%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G  +H   +K  + + TL ++NRL+ +Y     P  +L  FD++P +N  S+N+++   
Sbjct: 47  LGAAVHALLVKTALTHHTL-LSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAAL 105

Query: 83  MK-LGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            +  G    +L+L + MP   +N  S+N +IS  A                         
Sbjct: 106 ARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLA------------------------- 140

Query: 140 MIHCYVRNGFAREAVRLFKELNSDL---VERLQCDAFILATVIGACADLAALEYGKQIHS 196
                 R+G   EA+R+F +L  D     +++  D F + +   ACA L    + +++H 
Sbjct: 141 ------RHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHG 194

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            ++V+G++   ++ +++V+ Y K G    A  V + M   D    +++I+GY     ++D
Sbjct: 195 AVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDD 254

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A +VFD      ++ W ++ISG+  N E+  AL LF +M   GV+     L S L AC+ 
Sbjct: 255 AVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAK 314

Query: 317 LGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           +G +  GK+VHG   +  +  D   V + +AL+D YSK G    A  +F  +   D I  
Sbjct: 315 VGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISW 374

Query: 374 NTMITVYSSCGRIEDAKHIFRTM 396
           N+M+T +S  G+ + +  +F  M
Sbjct: 375 NSMVTGFSHNGQGKQSLAVFERM 397



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 12/307 (3%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  +H+ ++   L   ++L + LV LY       ++    + +   +    ++L++  A 
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 251 C-GKMNDARRVFDRTTDTSS--VMWNSMISGYISNNEDTEALLLFHKMRRN------GVL 301
             G + DA R+ D     S   V +N++IS    +  ++EAL +F ++ R+       V 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ S  SAC+ L    H +++HG     G+   VI+A+A++D YSK G   DA  +
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV 227

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F ++ + D++   +MI  Y     ++DA  +F  MP +  I+W ++I G  QNG    AL
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIAL 287

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ---IISTSLV 478
           +LF  M    +    F+L S + ACA +  +  G++V   +    + SD     I  +L+
Sbjct: 288 ELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALI 347

Query: 479 DFYCKCG 485
           D Y KCG
Sbjct: 348 DMYSKCG 354



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 173/388 (44%), Gaps = 47/388 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           ++LH   +  G +  T+ +AN ++  Y + G   DA  +FD+M  R+  SW +MI G+ +
Sbjct: 190 RELHGAVVVSG-MEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCR 248

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
               + ++Q+F++MP ++  +W  LISG  + GE + A  LF  M     +         
Sbjct: 249 ASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVP-------- 300

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL- 203
                                       F L + +GACA +  +  GK++H  IL   + 
Sbjct: 301 --------------------------TPFALVSCLGACAKVGLVARGKEVHGFILRRSIG 334

Query: 204 --DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
              F+  + ++L+++Y KCGD  +A  V + M E D    +++++G+++ G+   +  VF
Sbjct: 335 SDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVF 394

Query: 262 DR----TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           +R        + V + ++++        ++   +   M+ +GV   A   A+ + A    
Sbjct: 395 ERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRN 454

Query: 318 GFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILL 373
             LE   + + G + K+G +       ALL      G   +  +  +   +L+  ++   
Sbjct: 455 RQLEEASEFIKGLSSKIG-LGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRY 513

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSL 401
             +  +YS+ G+ +DA+ +   M  K L
Sbjct: 514 VMLSNIYSAAGQWDDARQVRALMKGKGL 541



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G  VH    K  +    ++++ L+  Y+    P+ +   F +L   +    N+++   + 
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 383 C-GRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNM------NKLDLR 433
             G + DA  +   MP  +++++S+N++I  L+++G   EAL +F  +       +  + 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +D+F++ S  SACA +       ++   V + G++   I++ ++VD Y K G ++
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVE 222


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 228/500 (45%), Gaps = 106/500 (21%)

Query: 29  LHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87
           +H L + I   S + + + L+  Y    +  +A  +F+EM  R+  SW +MI    + GH
Sbjct: 143 IHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGH 202

Query: 88  KEKSLQLFN------VMPQK----------------NDFSW-----------------NM 108
            +K L++ +      ++P K                ++  W                 N 
Sbjct: 203 WDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNA 262

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LIS + K G L  A   F  MP R   +WN++I  +V+N   +EA+R+F+E+   L+  +
Sbjct: 263 LISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM---LLHGV 319

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D   L +V+ ACA L  L  G  +HS+I  NG+  D++L +SL+N+Y K         
Sbjct: 320 TPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK--------- 370

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                 CG M  A RVF   T    V W  M+ GY+  ++ T A
Sbjct: 371 ----------------------CGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMA 408

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             LF +M+   V+     L S+LSACS LG L+ G+++H +  ++ V  D+ + SAL+D 
Sbjct: 409 FNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDM 468

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K G    A ++F                               R M +K  +SWN+MI
Sbjct: 469 YAKCGCIDTASEIF-------------------------------RKMQHKQTLSWNAMI 497

Query: 409 VGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
            GL+ NG   EA++LF  M +L D + D  +L +V+ ACA++  ++ G + F  ++ +G+
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGV 557

Query: 468 DSDQIISTSLVDFYCKCGFI 487
             D      +VD   + G +
Sbjct: 558 VPDTEHYGCIVDLLGRAGML 577



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 193/437 (44%), Gaps = 76/437 (17%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN------------------- 133
           ++F+ M Q N F WN +I G++     + A  +F +M RR                    
Sbjct: 73  KVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFA 132

Query: 134 AIAWNS---MIHCYVRN-GFARE------------AVRLFKELNSDLVERLQCDAFILAT 177
            + W S    IH  VR  GF  +            A R  KE +    E  + D     +
Sbjct: 133 GLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTS 192

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA-------NQVL 230
           +I ACA     +   ++ S +   G+  + V   ++++L   CG   +        NQV 
Sbjct: 193 MISACAQCGHWDKVLKMLSEMQAEGIIPNKV---TIISLLSACGQTQAVDEGRWVYNQVG 249

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
               E D    +ALIS Y  CG ++DA   F       +  WN++I G++ N+E  EAL 
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +F +M  +GV  D  TL SVLSAC+ LG L  G  VH +    G+               
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGI--------------- 354

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                   C         D IL N++I +Y+ CG +  A+ +F+TM  K ++SW  M+ G
Sbjct: 355 -------CC---------DNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCG 398

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
             +      A +LF  M   ++   + +L S++SAC+ + +L+ G ++ + +  + +  D
Sbjct: 399 YVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKD 458

Query: 471 QIISTSLVDFYCKCGFI 487
             + ++LVD Y KCG I
Sbjct: 459 LCLESALVDMYAKCGCI 475



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 167/380 (43%), Gaps = 68/380 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L++  A   +++ AR +F+ M + NA  WN MI  Y      R+A+ +F+E+    V   
Sbjct: 58  LLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSP- 116

Query: 169 QCDAFILATVIGACADLAALEY---GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             D + +A V+ A A  A L++   G  IH+ +   G   D  + S LVN YG    F S
Sbjct: 117 --DNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGA---FRS 171

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                       + +A +VF+   +   V W SMIS        
Sbjct: 172 ----------------------------VKEASKVFEEMYERDVVSWTSMISACAQCGHW 203

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            + L +  +M+  G++ +  T+ S+LSAC     ++ G+ V+    K G+  DV + +AL
Sbjct: 204 DKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNAL 263

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
                                          I++Y+ CG + DA   F+ MP +   SWN
Sbjct: 264 -------------------------------ISMYTKCGCLSDALEAFQAMPARYTKSWN 292

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           ++I G  QN    EAL +F  M    +  D  +L SV+SACA +  L  G  V + +   
Sbjct: 293 TLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDN 352

Query: 466 GLDSDQIISTSLVDFYCKCG 485
           G+  D I++ SL++ Y KCG
Sbjct: 353 GICCDNILTNSLINMYAKCG 372


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 191/425 (44%), Gaps = 56/425 (13%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FDEM  RN F+WN M+ G ++     ++ ++F+ MP +N  SW  L++G+A+ G +  AR
Sbjct: 57  FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEAR 116

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LFN +P RN ++WN+M+  Y RNG  + A  LF                          
Sbjct: 117 ELFNRIPDRNVVSWNAMVSGYARNGMVKRARELF-------------------------- 150

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           D+                    D V   ++++ Y K      A ++ + M  P     +A
Sbjct: 151 DMMPWR----------------DDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNA 194

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+SGY   G M  A  +F +    + V WN MI+GY        A  LF +M    VL  
Sbjct: 195 LLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSR 254

Query: 304 ASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            + +          G+L++G         K     D +  + ++D + +     DA KLF
Sbjct: 255 TAIMR---------GYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLF 305

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           SE+   D I  + ++  Y   G ++ A   F   PNK  ISWN++I G    G    AL 
Sbjct: 306 SEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEG----ALS 361

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L   M +  L+ D+ +L+ VIS CA++ SL  G+ V       G + D ++ +SL+  Y 
Sbjct: 362 LLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYS 421

Query: 483 KCGFI 487
           KCG I
Sbjct: 422 KCGLI 426



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 206/453 (45%), Gaps = 84/453 (18%)

Query: 40  TLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
            +P+ N      LL  Y RCG   +A  LF+ +P RN  SWNAM+ G+ + G  +++ +L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR----------------------- 131
           F++MP ++D SW  +ISG+ K   ++ AR LF+ MP                        
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAE 209

Query: 132 --------RNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFILATVIGAC 182
                   RN ++WN MI  Y R G    A RLF E+   D++ R    A +   +    
Sbjct: 210 VLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRT---AIMRGYLQNGS 266

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
            D A   +    H          D+V  +++++ + +    + A ++ + M + D     
Sbjct: 267 VDAAWKVFKDMPHR---------DTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWH 317

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           A++ GY   G M+ A   F R  +  ++ WN++ISGY    +D  AL L  +M R G+  
Sbjct: 318 AILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGY----KDEGALSLLSEMIRGGLKP 373

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D +TL+ V+S C+SL  L  GK VH  A K G   D +V S+L+  YSK G+ S+A ++F
Sbjct: 374 DQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVF 433

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   DT+  N MI  Y+  G  +                               EAL 
Sbjct: 434 ELILQRDTVTWNAMIATYAYHGLAD-------------------------------EALK 462

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           +F  M K   R D  +  S++SACA+   L  G
Sbjct: 463 VFDMMTKAGFRPDHATFLSILSACAHKGYLYEG 495



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 116/241 (48%), Gaps = 25/241 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C +  S+  GK +HL  +K G  +  L + + L+ MY +CG  ++A  +F+ +
Sbjct: 378 LSVVISICASLVSLGCGKMVHLWAIKTGFEHDAL-VMSSLISMYSKCGLISEASQVFELI 436

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGEL---- 119
            +R+  +WNAMI  +   G  +++L++F++M +     +  ++  ++S  A  G L    
Sbjct: 437 LQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGC 496

Query: 120 ---KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              ++ +  +N +PR +   ++ M+    R+GF  +A         D   R+  D    A
Sbjct: 497 YHFRSMQEDWNLVPRSD--HYSCMVDLLGRSGFIHQAY--------DFTRRIPSDHRTTA 546

Query: 177 --TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             T+  AC     ++ G+ I  ++L      D  + + L N+Y     ++SA  V   MK
Sbjct: 547 WETLFSACNSHGEIQLGEIIARNVL-KARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMK 605

Query: 235 E 235
           E
Sbjct: 606 E 606


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 203/413 (49%), Gaps = 35/413 (8%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G    ALL+   +      S N ++  +  L     SL  F+ +P KN  S+N L++ 
Sbjct: 46  RLGAAVHALLVKTALTHHTLLS-NRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAA 104

Query: 113 FAKA-GELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL---VE 166
            A+  G L  A  L + MP   RN +++N++I    R+G   EA+R+F +L  D     +
Sbjct: 105 LARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQ 164

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           ++  D F + +   ACA L    + +++H  ++V+G++   ++ +++V+ Y K G    A
Sbjct: 165 QVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDA 224

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V + M   D    +++I+GY     ++DA +VFD      ++ W ++ISG+  N E+ 
Sbjct: 225 RGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEE 284

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            AL LF +M   GV+     L S L AC+ +G +  GK+VHG   +              
Sbjct: 285 IALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILR-------------- 330

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                R + SD   +F         + N +I +YS CG +  A  +F  M  + +ISWNS
Sbjct: 331 -----RSIGSDPFNVF---------IHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNS 376

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           M+ G S NG   ++L +F  M K +++    +  +V++AC++   +  G ++ 
Sbjct: 377 MVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRIL 429



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 187/383 (48%), Gaps = 41/383 (10%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G  +H   +K  + + TL ++NRL+ +Y     P  +L  FD++P +N  S+N+++   
Sbjct: 47  LGAAVHALLVKTALTHHTL-LSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAAL 105

Query: 83  MK-LGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            +  G    +L+L + MP   +N  S+N +IS  A                         
Sbjct: 106 ARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLA------------------------- 140

Query: 140 MIHCYVRNGFAREAVRLFKELNSDL---VERLQCDAFILATVIGACADLAALEYGKQIHS 196
                 R+G   EA+R+F +L  D     +++  D F + +   ACA L    + +++H 
Sbjct: 141 ------RHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHG 194

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            ++V+G++   ++ +++V+ Y K G    A  V + M   D    +++I+GY     ++D
Sbjct: 195 AVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDD 254

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A +VFD      ++ W ++ISG+  N E+  AL LF +M   GV+     L S L AC+ 
Sbjct: 255 AVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAK 314

Query: 317 LGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           +G +  GK+VHG   +  +  D   V + +AL+D YSK G    A  +F  +   D I  
Sbjct: 315 VGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISW 374

Query: 374 NTMITVYSSCGRIEDAKHIFRTM 396
           N+M+T +S  G+ + +  +F  M
Sbjct: 375 NSMVTGFSHNGQGKQSLAVFERM 397



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 12/307 (3%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  +H+ ++   L   ++L + LV LY       ++    + +   +    ++L++  A 
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 251 C-GKMNDARRVFDRTTDTSS--VMWNSMISGYISNNEDTEALLLFHKMRRN------GVL 301
             G + DA R+ D     S   V +N++IS    +  ++EAL +F ++ R+       V 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ S  SAC+ L    H +++HG     G+   VI+A+A++D YSK G   DA  +
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGV 227

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F ++ + D++   +MI  Y     ++DA  +F  MP +  I+W ++I G  QNG    AL
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIAL 287

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ---IISTSLV 478
           +LF  M    +    F+L S + ACA +  +  G++V   +    + SD     I  +L+
Sbjct: 288 ELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALI 347

Query: 479 DFYCKCG 485
           D Y KCG
Sbjct: 348 DMYSKCG 354



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 173/388 (44%), Gaps = 47/388 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           ++LH   +  G +  T+ +AN ++  Y + G   DA  +FD+M  R+  SW +MI G+ +
Sbjct: 190 RELHGAVVVSG-MEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCR 248

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
               + ++Q+F++MP ++  +W  LISG  + GE + A  LF  M     +         
Sbjct: 249 ASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVP-------- 300

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL- 203
                                       F L + +GACA +  +  GK++H  IL   + 
Sbjct: 301 --------------------------TPFALVSCLGACAKVGLVARGKEVHGFILRRSIG 334

Query: 204 --DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
              F+  + ++L+++Y KCGD  +A  V + M E D    +++++G+++ G+   +  VF
Sbjct: 335 SDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVF 394

Query: 262 DR----TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           +R        + V + ++++        ++   +   M+ +GV   A   A+ + A    
Sbjct: 395 ERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRN 454

Query: 318 GFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILL 373
             LE   + + G + K+G +       ALL      G   +  +  +   +L+  ++   
Sbjct: 455 RQLEEASEFIKGLSSKIG-LGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRY 513

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSL 401
             +  +YS+ G+ +DA+ +   M  K L
Sbjct: 514 VMLSNIYSAAGQWDDARQVRALMKGKGL 541



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G  VH    K  +    ++++ L+  Y+    P+ +   F +L   +    N+++   + 
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 383 C-GRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNM------NKLDLR 433
             G + DA  +   MP  +++++S+N++I  L+++G   EAL +F  +       +  + 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +D+F++ S  SACA +       ++   V + G++   I++ ++VD Y K G ++
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVE 222


>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
 gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
          Length = 590

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 221/498 (44%), Gaps = 82/498 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+  + +  GK++H  ++        + +   L+ MY +CGN   A  +F+ + R+
Sbjct: 47  VLGACSCQNELPFGKKVHA-YISASEFKWDISLQTSLVNMYAKCGNLEGARKVFNRLERK 105

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM---------------------- 108
           +  SW+ MI  + + G   ++++++ +M  +     N                       
Sbjct: 106 DVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQV 165

Query: 109 ------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             L+  + K G L+ A+  F+ + +R+ + WN M+  Y   G  
Sbjct: 166 HGRLVSLGLETDVAVGSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSP 225

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           ++ +  +  ++      ++ +A     V+ AC+ +  L  G+++HS I+ +GL+ D  + 
Sbjct: 226 QQVIEAYDAMD------VEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTME 279

Query: 211 SSLVNLYGKCGDFNSANQVLNMM--KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +SL++LY KC    SA QV   M  K+ D    +AL++ YA CG +  A+RVF    D  
Sbjct: 280 TSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDTALLNMYAACGNLEAAKRVFGSRRDER 339

Query: 269 S--VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W +MI+ Y       EAL L+  M    +  ++ T  SVLSACSSLG +  G+++
Sbjct: 340 RDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKI 399

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H                                 L  + +  D  + N+++++Y+ CG +
Sbjct: 400 HS-------------------------------SLEGKAEELDVAVQNSLLSLYARCGSL 428

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            DA   F  + N+ + SW  M+   + +G    AL+L   M    +  D  +  SV+ AC
Sbjct: 429 RDAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLHAC 488

Query: 447 ANISSLELGEQVFARVTI 464
           ++  SLE G   F  + +
Sbjct: 489 SHEGSLERGWASFVSMAV 506



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 217/465 (46%), Gaps = 79/465 (16%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------- 101
           M ++N +SW+ MI  + + G + ++  LF  M  +                         
Sbjct: 1   MQQKNVYSWSMMIGAYAQNGRRNEAFLLFERMESEGIRPNAVTCLHVLGACSCQNELPFG 60

Query: 102 ---------NDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                    ++F W++     L++ +AK G L+ AR +FN + R++ I+W++MI  Y ++
Sbjct: 61  KKVHAYISASEFKWDISLQTSLVNMYAKCGNLEGARKVFNRLERKDVISWSTMISAYNQS 120

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ +++ + S+    ++ +A     VIGAC     +  G+Q+H  ++  GL+ D 
Sbjct: 121 GRHSEAIEIYRLMESET--SVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLETDV 178

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            +GS+LV L                               Y  CG + DA++ FDR    
Sbjct: 179 AVGSALVQL-------------------------------YVKCGNLEDAKKAFDRVEKR 207

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             + WN M+S Y       + +  +  M    V  +A T  +VL ACS++  L  G++VH
Sbjct: 208 DVLCWNFMLSAYSERGSPQQVIEAYDAM---DVEPNAVTYTNVLIACSAMEDLAQGQKVH 264

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN--TMITVYSSCGR 385
                 G+  D+ + ++LL  Y K      AC++F  +   DT ++    ++ +Y++CG 
Sbjct: 265 SRIVSSGLETDMTMETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDTALLNMYAACGN 324

Query: 386 IEDAKHIF--RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           +E AK +F  R    + ++ W +MI   +Q G   EAL L+  M   +++ +  +  SV+
Sbjct: 325 LEAAKRVFGSRRDERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVL 384

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           SAC+++ ++  G ++ + +     + D  +  SL+  Y +CG ++
Sbjct: 385 SACSSLGNILEGRKIHSSLEGKAEELDVAVQNSLLSLYARCGSLR 429


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 180/345 (52%), Gaps = 34/345 (9%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF-KELNSDLVERLQCDAFIL 175
           G ++ AR LF+  P R+ ++WN++I  YVR G   EA+ LF + +  D V R   D   +
Sbjct: 174 GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVR--PDEVTM 231

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
              +  C  +  LE G+++H  +  +G+     L ++L+++Y KCG    A  V   ++ 
Sbjct: 232 IAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEH 291

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                 + +I G+A  G M+DAR+VFD   +     WN++++GY+   +  EAL LFH+M
Sbjct: 292 RTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEM 351

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +   V+ D  T+ ++L+ACS LG LE G  VH +  K  ++  V + ++L+D Y+K    
Sbjct: 352 QEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAK---- 407

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                                      CG IE A HIF+ +P K+ ++W +MI GL+ +G
Sbjct: 408 ---------------------------CGNIEKAIHIFKEIPEKNALTWTAMICGLANHG 440

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
              EA++ F  M +L  + D+ +   V+SAC +   ++ G + F+
Sbjct: 441 HANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFS 485



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 172/380 (45%), Gaps = 46/380 (12%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYV--------RNGFAREAVRLFKELNSDLVERLQC 170
           L+ A  L + +P   A A+N+ I             +G  R  + L++ L      R   
Sbjct: 69  LRHALALLSSLP---ASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTAR--P 123

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D      ++ ACA L    YG    +H+L  GLD D  +              N+A   L
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFV-------------VNAATHFL 170

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           ++                   G M DARR+FDR+     V WN++I GY+      EAL 
Sbjct: 171 SIR------------------GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALE 212

Query: 291 LFHKMRRNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           LF +M      V  D  T+ + +S C  +  LE G+++HG     GV   V + +AL+D 
Sbjct: 213 LFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDM 272

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G    A  +F  ++    +   TMI  ++  G ++DA+ +F  MP + +  WN+++
Sbjct: 273 YIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALM 332

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G  Q     EAL LF  M +  +  D+ ++ ++++AC+ + +LE+G  V   +    L 
Sbjct: 333 TGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLV 392

Query: 469 SDQIISTSLVDFYCKCGFIK 488
               + TSL+D Y KCG I+
Sbjct: 393 FSVALGTSLIDMYAKCGNIE 412



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 166/408 (40%), Gaps = 101/408 (24%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +  C     + +G++LH  F+    ++ T+ + N L+ MY++CG+   A  +F+ +  R 
Sbjct: 235 VSGCGQMRDLELGRRLH-GFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRT 293

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
             SW  MI GF K G  + + ++F+ MP+++ F WN L++G+ +  + K A +LF++M  
Sbjct: 294 VVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQE 353

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
            + +                                   D   +  ++ AC+ L ALE G
Sbjct: 354 ASVVP----------------------------------DEITMVNLLTACSQLGALEMG 379

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
             +H +I  + L F   LG+SL+++Y KCG+   A  +   + E +    +A+I G AN 
Sbjct: 380 MWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANH 439

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G  N                               EA+  F  M   G   D  T   VL
Sbjct: 440 GHAN-------------------------------EAIEHFRTMIELGQKPDEITFIGVL 468

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT--YSKRGMPSDACKLFSELKVYD 369
           SAC   G ++ G++                  +L++T  + +R M   +C          
Sbjct: 469 SACCHAGLVKEGREFF----------------SLMETKYHLERKMKHYSC---------- 502

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGS 416
                 MI +    G +++A+ +  TMP     + W ++       G+
Sbjct: 503 ------MIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGN 544



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 34/204 (16%)

Query: 289 LLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           L L+  + R+G    D  T   +L AC+ L    +G     H  ++G+  DV V +A   
Sbjct: 109 LPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATH 168

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
             S RG                                +EDA+ +F   P + L+SWN++
Sbjct: 169 FLSIRG-------------------------------PMEDARRLFDRSPVRDLVSWNTL 197

Query: 408 IVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFARVTII 465
           I G  + G+P EAL+LF  M   D  +R D+ ++ + +S C  +  LELG ++   V   
Sbjct: 198 IGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSD 257

Query: 466 GLDSDQIISTSLVDFYCKCGFIKM 489
           G+     +  +L+D Y KCG ++M
Sbjct: 258 GVSCTVRLMNALMDMYIKCGSLEM 281



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 17/236 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C+   ++ +G  +H  +++K  L  ++ +   L+ MY +CGN   A+ +F E+
Sbjct: 363 MVNLLTACSQLGALEMGMWVH-RYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEI 421

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
           P +N  +W AMI G    GH  ++++ F  M     + ++ ++  ++S    AG +K  R
Sbjct: 422 PEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGR 481

Query: 124 TLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M       R    ++ MI    R G   EA +L   +       ++ DA +   +
Sbjct: 482 EFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMP------MEPDAVVWGAI 535

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             AC     +  G++  +  LV     DS +   L N+Y +      A++V  MM+
Sbjct: 536 FFACRMQGNISLGEKA-AMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMR 590


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 223/487 (45%), Gaps = 79/487 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL--- 92
           I   T+   N +L  Y +      A+  F++M  R+  SWN MI    + G   ++L   
Sbjct: 199 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLV 258

Query: 93  -----------------------QLFNV-------------MPQKNDFSWNMLISGFAKA 116
                                  +LF++             +PQ + +  + LI  +AK 
Sbjct: 259 VEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K A+ +FN +  RN+++W  +I   ++     ++V LF ++ ++L   +  D F LA
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL---MAIDQFALA 375

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C +   L  G+Q+HS  L +G +   V+ +SL++LY KCGD  +A  V + M E 
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 435

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    +++I+ Y+  G +  AR  FD     +++ WN+M+  YI +  + + L ++  M 
Sbjct: 436 DIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAML 495

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            +  V  D  T  ++   C+ +G  + G Q+ GH  K G+I +V VA             
Sbjct: 496 SQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA------------- 542

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N  IT+YS CGRI +A+ +F  +  K ++SWN+MI G SQ+G
Sbjct: 543 ------------------NAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 584

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A   F +M     + D  S  +V+S C++   ++ G+  F  +T +       IS 
Sbjct: 585 MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRV-----HGISP 639

Query: 476 SLVDFYC 482
            L  F C
Sbjct: 640 GLEHFSC 646



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 209/413 (50%), Gaps = 35/413 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            A+++ F++ G+ + + +LF+ + +   F  N +++G+AK   +  A   F DM  R+ +
Sbjct: 177 TALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVV 236

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN MI    ++G  REA+ L  E++   V   + D+    + + ACA L +L +GKQ+H
Sbjct: 237 SWNMMIAALSQSGRVREALGLVVEMHRKGV---RLDSTTYTSSLTACARLFSLGWGKQLH 293

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +                               +V+  + + D +  SALI  YA CG   
Sbjct: 294 A-------------------------------KVIRSLPQIDPYVASALIELYAKCGSFK 322

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A+RVF+   D +SV W  +I G +     ++++ LF++MR   +  D   LA+++S C 
Sbjct: 323 EAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCF 382

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +   L  G+Q+H    K G    ++V+++L+  Y+K G   +A  +FS +   D +   +
Sbjct: 383 NRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 442

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRM 434
           MIT YS  G I  A+  F  M  ++ I+WN+M+    Q+G+  + L ++  M ++ D+  
Sbjct: 443 MITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 502

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           D  +  ++   CA+I + +LG+Q+       GL  +  ++ + +  Y KCG I
Sbjct: 503 DWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRI 555



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 213/471 (45%), Gaps = 75/471 (15%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+ M++RCG    A  LF ++ R   F  N+M+ G+ KL   + +++ F  M +++
Sbjct: 175 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 234

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRN-------------------AIAWNSMIHC 143
             SWNM+I+  +++G ++ A  L  +M R+                    ++ W   +H 
Sbjct: 235 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 294

Query: 144 --------------------YVRNGFAREAVRLFKEL----------------------- 160
                               Y + G  +EA R+F  L                       
Sbjct: 295 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 354

Query: 161 -----NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
                N    E +  D F LAT+I  C +   L  G+Q+HS  L +G +   V+ +SL++
Sbjct: 355 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 414

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           LY KCGD  +A  V + M E D    +++I+ Y+  G +  AR  FD     +++ WN+M
Sbjct: 415 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAM 474

Query: 276 ISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +  YI +  + + L ++  M  +  V  D  T  ++   C+ +G  + G Q+ GH  K G
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 534

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +I +V VA+A +  YSK G  S+A KLF  L   D +  N MIT YS  G  + A   F 
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 395 TMPNKS----LISWNSMIVGLSQNGSPIEA---LDLFCNMNKLDLRMDKFS 438
            M +K      IS+ +++ G S +G   E     D+   ++ +   ++ FS
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 225/491 (45%), Gaps = 76/491 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L+SC +  ++   + LH   +  G L S + + N LL  Y+ CG  +DA  L    
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVG-LASAVFLQNTLLHAYLSCGALSDARRL---- 61

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                     L   + + N  + N++++G+AK G L  A  LF+
Sbjct: 62  --------------------------LRADIKEPNVITHNIMMNGYAKQGSLSDAEELFD 95

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACA 183
            MPRR+  +WN+++  Y       +A R    L + +      D    AF    V+ +C 
Sbjct: 96  RMPRRDVASWNTLMSGYF------QARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCG 149

Query: 184 DLAALEYGKQIHSHILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
            L   E   Q+    L    DF  D  + ++LV+++ +CG  + A+++ + ++ P  FC 
Sbjct: 150 ALGCRELAPQLLG--LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCR 207

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +++++GYA    ++ A   F+   +   V WN MI+    +    EAL L  +M R GV 
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D++T  S L+AC+ L  L  GKQ+H                                K+
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHA-------------------------------KV 296

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
              L   D  + + +I +Y+ CG  ++AK +F ++ +++ +SW  +I G  Q     +++
Sbjct: 297 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 356

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M    + +D+F+LA++IS C N   L LG Q+ +     G +   ++S SL+  Y
Sbjct: 357 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLY 416

Query: 482 CKCGFIKMDEY 492
            KCG ++  E+
Sbjct: 417 AKCGDLQNAEF 427



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 174/402 (43%), Gaps = 45/402 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C     + +G+QLH   LK G  N  + ++N L+ +Y +CG+  +A  +F  M
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSM 432

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW +MI  + ++G+  K+ + F+ M  +N  +W                     
Sbjct: 433 SERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITW--------------------- 471

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     N+M+  Y+++G   + ++++  + S   + +  D     T+   CAD+ A
Sbjct: 472 ----------NAMLGAYIQHGAEEDGLKMYSAMLSQ--KDVTPDWVTYVTLFRGCADIGA 519

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            + G QI  H +  GL  +  + ++ + +Y KCG  + A ++ +++   D    +A+I+G
Sbjct: 520 NKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITG 579

Query: 248 YANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLE 302
           Y+  G    A + FD    +      + + +++SG   +    E  L F  M R +G+  
Sbjct: 580 YSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISP 639

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDAC 359
                + ++      G L   K +     K+ +     V  ALL      G   +   A 
Sbjct: 640 GLEHFSCMVDLLGRAGHLTEAKDLID---KMPMKPTAEVWGALLSACKIHGNDELAELAA 696

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           K   EL   D+     +  +YS  G+ +D+  + + M +K +
Sbjct: 697 KHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 738


>gi|296084954|emb|CBI28363.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/508 (26%), Positives = 229/508 (45%), Gaps = 86/508 (16%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q  L  + +  +++   + N  L+MY+  G   +A  LFDEMP R+  SW  ++ G+ + 
Sbjct: 36  QTKLKPIPQNEIHARTRLFNLYLRMYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARH 95

Query: 86  GHKEKSLQLFNVM----------PQK---------------------------------N 102
           G   + L +F  M          P                                   +
Sbjct: 96  GPASEVLMMFWDMLCGSGGGLLRPDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVD 155

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F  N L+S +   G L+ A  +F  + + + + W+S++  YV+NG   E +R+F ++ S
Sbjct: 156 SFVENALVSMYGSCGALEDAAVVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVS 215

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
             +E    DAF  + V+GAC +L   ++G Q H +I+  G  FDS L             
Sbjct: 216 GGIEP---DAFAFSMVLGACTNLECWDFGTQAHCYIIKMG--FDSCL------------- 257

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                           +  ++L+  YA CG +   RRVF   ++ + V WN+ I+GY+ N
Sbjct: 258 ----------------YLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHN 301

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               EAL +F  +       D  +L S+L A S LG L+HGK++HG+  + G+  +  V 
Sbjct: 302 FHYLEALRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVV 361

Query: 343 SALLDTY-----SKRGMPSDACKL----FSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           S+LLD Y      +   P     L    + E   YD  ++ +++   S    +E AK +F
Sbjct: 362 SSLLDMYIGCIDHESLYPRVEVPLKLLNYLEGGGYDEFIMTSLLKWCSLESSLETAKRVF 421

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             +       W+++I G S NG   EAL LF  M    ++ ++F+  SVI AC  + +L 
Sbjct: 422 TRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLR 481

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFY 481
            G+++  ++   G +S+  +  +L++ Y
Sbjct: 482 KGKELHCKILRSGYESNFSVVNTLINLY 509



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 143/534 (26%), Positives = 249/534 (46%), Gaps = 90/534 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C     +  G+ +H   +K+  +  +  + N L+ MY  CG   DA ++F  +
Sbjct: 124 FAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSF-VENALVSMYGSCGALEDAAVVFGGI 182

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS-----------W---- 106
            + +   W++++ G++K G +E+ L++F       + P    FS           W    
Sbjct: 183 DKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGT 242

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+  +AK G+L+  R +F+ M  +N ++WN+ I+ YV N 
Sbjct: 243 QAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNF 302

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+R+F+ L   + E  QCD F L +++ A + L  L++GK+IH +IL  G++ +  
Sbjct: 303 HYLEALRIFQIL---MEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRY 359

Query: 209 LGSSLVNLYGKCGDFNSAN-------QVLNMMKEP--DDFCLSALISGYANCGKMNDARR 259
           + SSL+++Y  C D  S         ++LN ++    D+F +++L+   +    +  A+R
Sbjct: 360 VVSSLLDMYIGCIDHESLYPRVEVPLKLLNYLEGGGYDEFIMTSLLKWCSLESSLETAKR 419

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF R     +  W+++ISG+  N    EAL LF KM+ +G+  +  T  SV+ AC +L  
Sbjct: 420 VFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALEN 479

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  GK++H    + G   +  V + L++ YS+      A KL                  
Sbjct: 480 LRKGKELHCKILRSGYESNFSVVNTLINLYSELWQHKQALKL------------------ 521

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL--SQNGSPIEALDLFCNMNKLDLRMDKF 437
              C  I D++           ISWN +I     +++   I  L     ++  +L  D  
Sbjct: 522 ---CSMIPDSE-----------ISWNFLIRACLGAEDYEIIHKLLWRIQVSHGNL--DPV 565

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           S   + ++C++   L +G Q  A +T  GL S   IS SL+  Y  CG  K DE
Sbjct: 566 SACDIFASCSSPVLLNVGTQAHAYMTKRGLISHPTISNSLIQMYSACG--KFDE 617



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 189/440 (42%), Gaps = 97/440 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK++H + L+ GI  +   + + LL MY+ C    D   L+   PR              
Sbjct: 342 GKEIHGYILRAGI-ETNRYVVSSLLDMYIGC---IDHESLY---PR-------------- 380

Query: 84  KLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                E  L+L N +     ++F    L+   +    L+TA+ +F  + + +   W+++I
Sbjct: 381 ----VEVPLKLLNYLEGGGYDEFIMTSLLKWCSLESSLETAKRVFTRVEQPDTAPWSALI 436

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             +  NG   EA++LF+++  D    ++ + F   +VI AC  L  L  GK++H  IL +
Sbjct: 437 SGHSWNGCFAEALKLFRKMQFD---GIKANEFTFTSVILACLALENLRKGKELHCKILRS 493

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G + +  + ++L+NLY +      A ++ +M+  PD                        
Sbjct: 494 GYESNFSVVNTLINLYSELWQHKQALKLCSMI--PD------------------------ 527

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEAL--LLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                 S + WN +I   +   ED E +  LL+     +G L+  S    + ++CSS   
Sbjct: 528 ------SEISWNFLIRACL-GAEDYEIIHKLLWRIQVSHGNLDPVSA-CDIFASCSSPVL 579

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  G Q H +  K G+I    ++                               N++I +
Sbjct: 580 LNVGTQAHAYMTKRGLISHPTIS-------------------------------NSLIQM 608

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           YS+CG+ ++A   F  MP K   SW S++    ++G P EAL+L   M   +   D+ + 
Sbjct: 609 YSACGKFDEAVQAFNLMPEKDTCSWTSILSARVEHGHPSEALNLISQMRWKNKPADQSTF 668

Query: 440 ASVISACANISSLELGEQVF 459
            SV++ACA +  ++   ++F
Sbjct: 669 RSVLNACAQMGLVDEAFRLF 688



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL----DLFC 425
           T L N  + +Y + G +++A+ +F  MP +SL+SW  ++ G +++G   E L    D+ C
Sbjct: 51  TRLFNLYLRMYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLC 110

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                 LR D F  A V+ AC  +  L  G  V   V       D  +  +LV  Y  CG
Sbjct: 111 GSGGGLLRPDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCG 170

Query: 486 FIK 488
            ++
Sbjct: 171 ALE 173


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 195/398 (48%), Gaps = 67/398 (16%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           ++F +    +  + N +++ + + GE   AR +F+++  ++ ++WNS++  Y + GFARE
Sbjct: 142 EVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFARE 201

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           AV +F  L  +     + D   L +V+GAC +L  LE G+ +   ++  G+  +S +GS 
Sbjct: 202 AVEVFGRLREE--SGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGS- 258

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                         ALIS Y+ CG++  +RR+FD       + W
Sbjct: 259 ------------------------------ALISMYSKCGELVSSRRIFDGMPSRDFITW 288

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N+ IS Y  N    EA+ LFH M+ NGV  +  TL +VLSAC+S+G L+ GKQ+  +A  
Sbjct: 289 NAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATH 348

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
            G+  D+ VA+AL+D Y+K                               CG +E A+ +
Sbjct: 349 RGLQHDIFVATALIDMYAK-------------------------------CGSLESAQRV 377

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANIS 450
           F  MP K+  SWN+MI  L+ +G   EAL LF  M+      R +  +  S++SAC +  
Sbjct: 378 FNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAG 437

Query: 451 SLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
            ++ G ++F  + T+ GL       + +VD   + G +
Sbjct: 438 LVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHL 475



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 178/399 (44%), Gaps = 96/399 (24%)

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           +L   ++ P  ND+++N++         L+   T ++D P          +H Y +    
Sbjct: 69  TLIFSHITPHPNDYAFNIM---------LRATTTTWHDYPL--------TLHLYHQ---- 107

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
                  K LN      +  + F    V  ACA+L  +   +  H  +   GLD D    
Sbjct: 108 ------MKTLN------ISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTV 155

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +S+V +Y +                               CG+   AR+VFD  T+   V
Sbjct: 156 NSMVTMYFR-------------------------------CGENGVARKVFDEITEKDLV 184

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            WNS++SGY       EA+ +F ++R  +G   D  +L SVL AC  LG LE G+ V G 
Sbjct: 185 SWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGF 244

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  +  + SAL                               I++YS CG +  +
Sbjct: 245 VVERGMKVNSYIGSAL-------------------------------ISMYSKCGELVSS 273

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + IF  MP++  I+WN+ I   +QNG   EA+ LF +M +  +  +K +L +V+SACA+I
Sbjct: 274 RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASI 333

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +L+LG+Q+    T  GL  D  ++T+L+D Y KCG ++
Sbjct: 334 GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLE 372


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 218/482 (45%), Gaps = 91/482 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A+LL SC    S    + +H   L     +  + I NRL+ +Y +C    DA  LFD M
Sbjct: 18  FAKLLDSCLRSRSARGTRLVHARILMTQ-FSMEIFIQNRLIDVYGKCDCLDDARKLFDRM 76

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                          PQ+N F+WN LIS   K+G L  A  LF 
Sbjct: 77  -------------------------------PQRNTFTWNSLISVLTKSGFLDEAARLFG 105

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP  +  +WNSM+  + ++    E++  F +++    E    + +   + + ACA L  
Sbjct: 106 SMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHR---EDFLLNEYSFGSALSACAGLMD 162

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G Q+H+ +  +    D  +GS+L+++                               
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDM------------------------------- 191

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+ CG +  A  VF    + + V WNS+I+ Y  N   +EAL +F +M  +G+  D  TL
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTL 251

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 366
           ASV+SAC+SL  L+ G Q+H    K     DD+++ +AL+D Y+K    ++A ++F  + 
Sbjct: 252 ASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
           + + +   +M++ Y+    ++ A+ +F  M  ++++SWN++I G +QNG   EAL LF  
Sbjct: 312 IRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRL 371

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           + +  +    ++  ++                        L SD  +  SL+D Y KCG 
Sbjct: 372 LKRESIWPTHYTFGNL------------------------LKSDIFVGNSLIDMYMKCGS 407

Query: 487 IK 488
           I+
Sbjct: 408 IE 409



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 103/199 (51%)

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           H + R+  L ++S  A +L +C         + VH          ++ + + L+D Y K 
Sbjct: 4   HGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKC 63

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
               DA KLF  +   +T   N++I+V +  G +++A  +F +MP     SWNSM+ G +
Sbjct: 64  DCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFA 123

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q+    E+L+ F  M++ D  ++++S  S +SACA +  L +G QV A V+     +D  
Sbjct: 124 QHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVY 183

Query: 473 ISTSLVDFYCKCGFIKMDE 491
           + ++L+D Y KCG +   E
Sbjct: 184 MGSALIDMYSKCGSVACAE 202



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 136/322 (42%), Gaps = 52/322 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C +  ++  G Q+H   +K       L + N L+ MY +C    +A  +FD M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL-- 125
             RN  S  +M+ G+ +    + +  +F+ M Q+N  SWN LI+G+ + GE + A  L  
Sbjct: 311 SIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFR 370

Query: 126 --------------------------------------------FNDMPRRNAIAWNSMI 141
                                                       F  M  R+ ++WN++I
Sbjct: 371 LLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAII 430

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y +NG+  EA+++F+++   LV   + D   +  V+ AC+    +E G+     +  +
Sbjct: 431 VGYAQNGYGAEALQIFRKM---LVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEH 487

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRV 260
           GL       + +V+L G+ G  N A  ++  M   PD     +L++     G +   +  
Sbjct: 488 GLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHA 547

Query: 261 FDRTTDTSSVMWNSMISGYISN 282
            ++  +     WNS     +SN
Sbjct: 548 AEKLLEIDP--WNSGPYVLLSN 567


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 215/462 (46%), Gaps = 77/462 (16%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  N ++E +   G    +L+ F  +P  N +S+N  IS   +AG+L  AR L   MP
Sbjct: 44  DTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGDLAAARDLLGRMP 103

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            RNA++WN++I    R+G   EA+ +++ +   L E L    F LA+V+ AC  +AAL+ 
Sbjct: 104 DRNAVSWNTVIAAVARSGSPGEALEMYQGM---LQEGLAPTNFTLASVLSACGAVAALDD 160

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++ H   +  GLD    + + L+ +Y KCG    A ++ + M  P++   +A++ G A 
Sbjct: 161 GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 220

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G ++DA R                               LF +M R G+  D   ++SV
Sbjct: 221 GGAVDDALR-------------------------------LFARMSRTGIRVDPVAVSSV 249

Query: 311 LSACSS--------LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           L AC+            ++  + +H    + G   D  V ++L+D Y+K     +A K+F
Sbjct: 250 LGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVF 309

Query: 363 SELKVYDTILLNTMITVY--------------------------------SSCGRIED-- 388
             L     +  N +IT Y                                +SC +  D  
Sbjct: 310 ESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVP 369

Query: 389 -AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ +F  +P  S+ +WN+++ G  Q     E +DLF  M   +++ D+ +LA ++S+C+
Sbjct: 370 SARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCS 429

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            + + ELG+QV +    + L +D  +++ L+D Y KCG + +
Sbjct: 430 RLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGI 471



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/527 (27%), Positives = 229/527 (43%), Gaps = 124/527 (23%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------- 101
           R G+   A  L   MP RN  SWN +I    + G   ++L+++  M Q+           
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLAS 147

Query: 102 ----------------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
                                       + F  N L+  + K G +  A  LF+ MP  N
Sbjct: 148 VLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPN 207

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY--- 190
            +++ +M+    + G   +A+RLF  ++      ++ D   +++V+GACA   A +Y   
Sbjct: 208 EVSFTAMMGGLAQGGAVDDALRLFARMSR---TGIRVDPVAVSSVLGACAQACAGDYNVA 264

Query: 191 -----GKQIHSHILVNGLDFDSVLGSSLVNLY---------------------------- 217
                 + IH+ ++  G   D  +G+SLV+LY                            
Sbjct: 265 RAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILI 324

Query: 218 ---GKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMND---ARRVFDRTTDT 267
              G+ G +  A +VL  M+E    P++   S ++   A+C K  D   AR +FD+    
Sbjct: 325 TGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNML---ASCIKARDVPSARAMFDKIPKP 381

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           S   WN+++SGY       E + LF +M+   V  D +TLA +LS+CS LG  E GKQVH
Sbjct: 382 SVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVH 441

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             + ++ + +D+ VAS L+D YSK                               CG++ 
Sbjct: 442 SASVRLLLHNDMFVASGLIDIYSK-------------------------------CGQVG 470

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A  IF  M  + ++ WNSMI GL+ +    EA D    M +  +   + S AS+I+ CA
Sbjct: 471 IALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCA 530

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            +SS+  G Q+ A+V   G D +  +  SL+D Y K G   MD+  L
Sbjct: 531 RLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSG--NMDDARL 575



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 208/444 (46%), Gaps = 74/444 (16%)

Query: 13  QSC----NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           Q+C    N   +I + + +H   ++KG   S   + N L+ +Y +     +A+ +F+ + 
Sbjct: 255 QACAGDYNVARAIQLAQSIHALVVRKG-FGSDQHVGNSLVDLYAKGMKMDEAIKVFESLS 313

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
             +  SWN +I G+ +LG  E+++++   M +     N+ +++ +++   KA ++ +AR 
Sbjct: 314 SVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARA 373

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ +P+ +   WN+++  Y +    +E + LF+ +     + +Q D   LA ++ +C+ 
Sbjct: 374 MFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQH---QNVQPDRTTLAVILSSCSR 430

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L   E GKQ+HS                                 + ++   D F  S L
Sbjct: 431 LGNFELGKQVHS-------------------------------ASVRLLLHNDMFVASGL 459

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           I  Y+ CG++  A  +F+  T+   V WNSMISG   ++   EA     +MR NG+    
Sbjct: 460 IDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTE 519

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S+ AS+++ C+ L  +  G+Q+H    K G   +V V  +L+D Y+K             
Sbjct: 520 SSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAK------------- 566

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                              G ++DA+  F  M  K+L++WN MI G +QNG   +A++LF
Sbjct: 567 ------------------SGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELF 608

Query: 425 CNMNKLDLRMDKFSLASVISACAN 448
             M     + D  +  +V++ C++
Sbjct: 609 EYMLTTKQKPDSVTFIAVLTGCSH 632



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 41/308 (13%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K  H+ +L  GL  D+ L + LV LY   G    A +    +  P+ +  +A IS     
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G +  AR +  R  D ++V WN++I+    +    EAL ++  M + G+     TLASVL
Sbjct: 90  GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVL 149

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           SAC ++  L+ G++ HG A KVG+     V + LL  Y+K G  +DA +LF  +      
Sbjct: 150 SACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM------ 203

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                                    P+ + +S+ +M+ GL+Q G+  +AL LF  M++  
Sbjct: 204 -------------------------PSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTG 238

Query: 432 LRMDKFSLASVISACA-------NIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           +R+D  +++SV+ ACA       N++ +++L + + A V   G  SDQ +  SLVD Y K
Sbjct: 239 IRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAK 298

Query: 484 CGFIKMDE 491
              +KMDE
Sbjct: 299 G--MKMDE 304



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%)

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
           + K  H      G+  D  + + L++ YS  G+P  A + F  L   +    N  I+   
Sbjct: 28  NAKAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAAC 87

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             G +  A+ +   MP+++ +SWN++I  ++++GSP EAL+++  M +  L    F+LAS
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLAS 147

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           V+SAC  +++L+ G +       +GLD  Q +   L+  Y KCG +
Sbjct: 148 VLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSV 193



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 170/414 (41%), Gaps = 79/414 (19%)

Query: 29  LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
           L F+++          + +L   ++  +   A  +FD++P+ +  +WN ++ G+ +    
Sbjct: 340 LEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELH 399

Query: 89  EKSLQLF------NVMPQK--------------------------------ND-FSWNML 109
           ++++ LF      NV P +                                ND F  + L
Sbjct: 400 QETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGL 459

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I  ++K G++  A  +FN M  R+ + WNSMI     +  + EA    K++  + +   +
Sbjct: 460 IDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTE 519

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
                 A++I  CA L+++  G+Q+H+ +L +G D +  +G SL+++Y K G+       
Sbjct: 520 SS---YASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGN------- 569

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                                   M+DAR  F+     + V WN MI GY  N    +A+
Sbjct: 570 ------------------------MDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAV 605

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDT 348
            LF  M       D+ T  +VL+ CS  G ++      +      G+   V   + L+D 
Sbjct: 606 ELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDA 665

Query: 349 YSKRGMPSDACKLFSELKVYD-----TILLNTMITVYSSCGRIEDAKHIFRTMP 397
            ++    ++   +  ++   D      +LL   +  +++      AKH+FR  P
Sbjct: 666 LARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDP 719



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 43/215 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L SC+   +  +GKQ+H   ++  +L++ + +A+ L+ +Y +CG    AL++F+ M
Sbjct: 421 LAVILSSCSRLGNFELGKQVHSASVRL-LLHNDMFVASGLIDIYSKCGQVGIALIIFNMM 479

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------------PQ-- 100
             R+   WN+MI G       E++      M                         PQ  
Sbjct: 480 TERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGR 539

Query: 101 -------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K+ +  N+     LI  +AK+G +  AR  FN M  +N +AWN MIH Y +NG
Sbjct: 540 QMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNG 599

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           F  +AV LF+ +   L  + + D+     V+  C+
Sbjct: 600 FGEKAVELFEYM---LTTKQKPDSVTFIAVLTGCS 631



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A ++  C    SI  G+Q+H   LK G  +  + +   L+ MY + GN  DA L F+ M 
Sbjct: 523 ASMINLCARLSSIPQGRQMHAQVLKDG-YDQNVYVGCSLIDMYAKSGNMDDARLFFNCMI 581

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND-FSWNMLISGFAKAGELKTART 124
            +N  +WN MI G+ + G  EK+++LF  M    QK D  ++  +++G + +G +  A T
Sbjct: 582 VKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVT 641

Query: 125 LFNDM 129
            FN M
Sbjct: 642 FFNSM 646


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 205/391 (52%), Gaps = 40/391 (10%)

Query: 104 FSWNMLISGFAKAGE---LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
           FS + LIS F+  G    L  +R LF+ +   N   WN+MI  Y R+   REA+ L+  +
Sbjct: 42  FSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSM 101

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
            +  +     + F    ++ +CA L++LE G ++HSHI+ +G                  
Sbjct: 102 IAKGIA--PPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGF----------------- 142

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                         E D F  +ALI  Y+  G +N AR +FD +     V +N+MI GY 
Sbjct: 143 --------------ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYA 188

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK--VGVIDD 338
             N+   AL LF +M+ +G+L D  T  ++ S CS L     GKQ+H    K    +  +
Sbjct: 189 EVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSN 248

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-LNTMITVYSSCGRIEDAKHIFRTMP 397
           +++ SA++D Y+K G+ + A ++FS +    +    ++M+  Y+ CG I  A+ +F  M 
Sbjct: 249 ILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMH 308

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            + +ISW +MI G SQ G   EAL+LF  M  L ++ D+ +L +V+SACA + + +LG++
Sbjct: 309 ERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKR 368

Query: 458 VFARVTIIGL-DSDQIISTSLVDFYCKCGFI 487
           ++ +    G+ + + I++ +++D Y KCG I
Sbjct: 369 LYHQYIENGVFNQNTILTAAVMDMYAKCGSI 399



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 232/499 (46%), Gaps = 89/499 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL----LLFDE 66
           LL+SC    S   G Q+H   +  G+ +    I+ RL+  +   G+  D L    LLF +
Sbjct: 15  LLESCK---SFKQGLQIHAQTIVNGLHHQIFSIS-RLISFFSLLGS-KDGLDHSRLLFSQ 69

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-----NDFSW--------------- 106
           +   N F WN MI G+ +  +  +++ L+  M  K     N+F++               
Sbjct: 70  IDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEP 129

Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N LI  ++  G L  ARTLF++   R+ +++N+MI  Y  
Sbjct: 130 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189

Query: 147 NGFAREAVRLFKEL-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
                 A+ LF E+ NS ++     D F    +   C+ L     GKQIH+ +  N    
Sbjct: 190 VNQPESALCLFGEMQNSGILP----DEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI 245

Query: 206 DS--VLGSSLVNLYGKCGDFNSANQVLNMM-KEPDDFCLSALISGYANCGKMNDARRVFD 262
           DS  +L S++V++Y KCG  N A +V + M         S+++ GYA CG++N AR++F+
Sbjct: 246 DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFN 305

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
              +   + W +MISGY    + +EAL LF +M   G+  D  TL +VLSAC+ LG  + 
Sbjct: 306 HMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDL 365

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK+++    + GV +                               +TIL   ++ +Y+ 
Sbjct: 366 GKRLYHQYIENGVFNQ------------------------------NTILTAAVMDMYAK 395

Query: 383 CGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           CG I+ A  IFR +    K+   +NSMI GL+Q+G    A+ +F  +    L+ D+ +  
Sbjct: 396 CGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFV 455

Query: 441 SVISACANISSLELGEQVF 459
            V+ AC +   +E G+++F
Sbjct: 456 GVLCACGHSGLIEEGKKLF 474



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 68/311 (21%)

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           + + G QIH+  +VNGL                       +Q+         F +S LIS
Sbjct: 21  SFKQGLQIHAQTIVNGLH----------------------HQI---------FSISRLIS 49

Query: 247 GYANCGK---MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            ++  G    ++ +R +F +    +  MWN+MI GY  ++   EA++L+  M   G+   
Sbjct: 50  FFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPP 109

Query: 304 AS-TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
            + T   +L++C+ L  LE G +VH H  K G   D+ V +AL+  YS  G  + A  LF
Sbjct: 110 NNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLF 169

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            E  V D +  NTMI  Y+   + E A  +F  M N  ++                    
Sbjct: 170 DESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILP------------------- 210

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDF 480
                       D+F+  ++ S C+ ++   +G+Q+ A+V   +  +DS+ ++ +++VD 
Sbjct: 211 ------------DEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDM 258

Query: 481 YCKCGFIKMDE 491
           Y KCG I + E
Sbjct: 259 YAKCGLINIAE 269



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 15/144 (10%)

Query: 357 DACKLFSE-LKVYDTILLN----------TMITVYSSCGRIEDAKH---IFRTMPNKSLI 402
           ++CK F + L+++   ++N           +I+ +S  G  +   H   +F  +   +L 
Sbjct: 17  ESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLF 76

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
            WN+MI G S++ +P EA+ L+ +M  K     + F+   ++++CA +SSLE G +V + 
Sbjct: 77  MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 136

Query: 462 VTIIGLDSDQIISTSLVDFYCKCG 485
           +   G +SD  +  +L+  Y   G
Sbjct: 137 IIKHGFESDLFVRNALIHLYSVFG 160



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 108/244 (44%), Gaps = 28/244 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    +  +GK+L+  +++ G+ N    +   ++ MY +CG+   AL +F  +
Sbjct: 350 LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409

Query: 68  PR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKT 121
            +  +  F +N+MI G  + G  E ++ +F  +     + ++ ++  ++     +G ++ 
Sbjct: 410 GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEE 469

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERL--QCDAFI 174
            + LF  M     I      +  M+    R G   EA         DLV+++  + ++ I
Sbjct: 470 GKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAY--------DLVQKMPFEANSVI 521

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLN 231
              ++ AC     ++ G+     +    L+ ++  G+  V   N+      +  A QV  
Sbjct: 522 WRALLSACRTHGNVKIGEIAGQKL----LEMEAQHGARYVLLSNILADANQWEEARQVRK 577

Query: 232 MMKE 235
           +M++
Sbjct: 578 VMED 581


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 206/441 (46%), Gaps = 50/441 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           NR +  +MR G   DA  LF  MPRR+  ++N M+ G+   G   ++L  F  +P+ + F
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSF 170

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S+N L+     +  L   R LF++MP ++++++N MI  +  +G    A   F       
Sbjct: 171 SYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYF------- 223

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                              DLA                 + D+V  + ++  Y + G   
Sbjct: 224 -------------------DLAP----------------EKDAVSWNGMLAAYVRNGRIQ 248

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A ++ +   E D    +AL++GY    ++ +A+++F++      V WN+M+SGY    +
Sbjct: 249 EARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGD 308

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EA  LF        + D  T  +++S  +  G LE  K+V           + +  +A
Sbjct: 309 MAEARRLFDV----APIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPD----KNAVSWNA 360

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           ++  Y +R M  +A +LF  +   +    NTM+T Y+  G +++A+ IF  MP K  +SW
Sbjct: 361 MMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSW 420

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            +M+   SQ G   E L LF  M +    +++ + A V+S CA+I++LE G Q+ +R+  
Sbjct: 421 AAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIK 480

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
            G      +  +L+  Y KCG
Sbjct: 481 AGYGVGCFVGNALLAMYFKCG 501



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 200/429 (46%), Gaps = 45/429 (10%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FD  P ++  SWN M+  +++ G  +++ +LF+   + +  SWN L++G+ +  +++ A+
Sbjct: 223 FDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQ 282

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +FN MP+R+ ++WN+M+  Y R G   EA RLF       V  ++ D F    ++   A
Sbjct: 283 KMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFD------VAPIR-DVFTWTAIVSGYA 335

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
               LE  K++   +     D ++V  ++++  Y +      A ++ + M   +    + 
Sbjct: 336 QNGMLEEAKRVFDAM----PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNT 391

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +++GYA  G +++AR +F       +V W +M++ Y       E L LF +M R G   +
Sbjct: 392 MLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVN 451

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            S  A VLS C+ +  LE G Q+H    K G      V +ALL  Y K G   +A   F 
Sbjct: 452 RSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFE 511

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           E++  D +  NTMI  Y        A+H F                         EAL++
Sbjct: 512 EMEERDVVSWNTMIAGY--------ARHGFGK-----------------------EALEV 540

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYC 482
           F  M K   + D  +L  V++AC++   +E G   F  +    G+ +     T ++D   
Sbjct: 541 FDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLG 600

Query: 483 KCGFIKMDE 491
           + G  ++DE
Sbjct: 601 RAG--RLDE 607



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 203/446 (45%), Gaps = 89/446 (19%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y + G   +A  +FD MP +N  SWNAM+  +++    E++ +LF+ MP +N  SW
Sbjct: 330 IVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW 389

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +++G+A+AG L  AR +F  MP+++A++W +M+  Y + GF+ E ++LFKE+      
Sbjct: 390 NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMG----- 444

Query: 167 RLQCDAFI----LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
             +C  ++     A V+  CAD+AALE G Q+HS ++  G      +G++L+ +Y KCG 
Sbjct: 445 --RCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGS 502

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A+     M+E D    + +I+GYA  G        F +                   
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHG--------FGK------------------- 535

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG---------------KQVH 327
               EAL +F  MR+     D  TL  VL+ACS  G +E G               K  H
Sbjct: 536 ----EALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEH 591

Query: 328 GHAC------KVGVIDDVI-------------VASALLDT---YSKRGMPSDACKLFSEL 365
            + C      + G +D+ +             +  ALL     +    +  +A +   EL
Sbjct: 592 -YTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFEL 650

Query: 366 KVYDTILLNTMITVYSSCGRIEDA---KHIF-----RTMPNKSLISWNSMIVGLSQNGS- 416
           +  +  +   +  +Y+S G+  D    +HI      + +P  S I   + +   S   S 
Sbjct: 651 EPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSV 710

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASV 442
             E  D++  +  LD+RM K    S 
Sbjct: 711 HPEREDIYAFLEDLDIRMKKAGYVSA 736



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 17/234 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G QLH   +K G       + N LL MY +CG+  +A   F+EM  R
Sbjct: 458 VLSTCADIAALECGMQLHSRLIKAGYGVGCF-VGNALLAMYFKCGSMEEAHSAFEEMEER 516

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN MI G+ + G  +++L++F+ M     + +D +   +++  + +G ++   + F
Sbjct: 517 DVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYF 576

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M R   +A     +  MI    R G   EAV L K++        + D+ +   ++GA
Sbjct: 577 YSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMP------FEPDSTMWGALLGA 630

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                  E G+     I     + ++ +   L N+Y   G +   +++ ++M E
Sbjct: 631 SRIHRNSELGRNAAEKIFELEPE-NAGMYVLLSNIYASSGKWRDVDKMRHIMHE 683



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 10/153 (6%)

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           A+A   ++ +   P+DAC   +     + I  N  IT +   GR+ DA+ +F  MP +S 
Sbjct: 81  AAARQRSHRRPPAPADAC--ITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRST 138

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
            ++N+M+ G + NG   +AL  F ++     R D FS  +++ A    SSL     +F  
Sbjct: 139 STYNTMLAGYAANGRLPQALSFFRSIP----RPDSFSYNTLLHALGVSSSLADVRALFDE 194

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           + +     D +    ++  +   G + +  +Y 
Sbjct: 195 MPV----KDSVSYNVMISSHANHGLVSLARHYF 223



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 330 ACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           AC  G  D +VI  +  +  + + G   DA +LF+ +    T   NTM+  Y++ GR+  
Sbjct: 97  ACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQ 156

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   FR++P     S+N+++  L  + S  +   LF  M       D  S   +IS+ AN
Sbjct: 157 ALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPV----KDSVSYNVMISSHAN 212

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              + L    F     +  + D +    ++  Y + G I+
Sbjct: 213 HGLVSLARHYFD----LAPEKDAVSWNGMLAAYVRNGRIQ 248


>gi|302789718|ref|XP_002976627.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
 gi|300155665|gb|EFJ22296.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
          Length = 734

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/522 (25%), Positives = 234/522 (44%), Gaps = 117/522 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    +  G+++H   +  G    T+ ++  +L MY +C    DA  +FD + R+
Sbjct: 110 ILGACSNLGDVETGRKIHARMVFLGWDTDTV-VSTAILGMYSKCEKLGDAKKIFDSLRRK 168

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNML--------------- 109
           +  SW A+I  F +LG    +L+LF       V P ++ F  N+L               
Sbjct: 169 DVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFV-NILAACTYMDALEDGDKL 227

Query: 110 -------------------ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                              ++ +++ G L  A+  F+ +  ++  +WN+++  Y+++G  
Sbjct: 228 YKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAYIQHGHI 287

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            +A+ L+KE++   V   + D F    ++GAC+ L ALE G++IH+              
Sbjct: 288 SQALSLYKEMD---VHGAEPDTFTHVCLLGACSSLGALEEGERIHA-------------- 330

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                                M  +PD    SA+++ YA CG +  A   F + + ++ V
Sbjct: 331 --------------------RMGDKPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVV 370

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +WN++I+GY+      EAL L+H M   G+  D  T +SVL ACS    L  G+ VH   
Sbjct: 371 VWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARI 430

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G+  +V+V                              L N ++ +++ CG +  A 
Sbjct: 431 VSRGL--EVVVP-----------------------------LQNGLVNMFAKCGSLTLAL 459

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN-- 448
            +FR M +++ +SWNSM+    Q+G    A +LF  M        + +  S+++ C++  
Sbjct: 460 EMFRGMASRNTVSWNSMVTAFCQHGDGGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSA 519

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFY-----CKCG 485
            SSL+ G+ +  R+T  G+DSD  ++T L+  Y      KCG
Sbjct: 520 CSSLDQGKALHQRITASGVDSDPTVATCLLTMYLLNALAKCG 561



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/520 (24%), Positives = 223/520 (42%), Gaps = 108/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
            RLL+ C    S+  G ++H    + G+   T  + N L+QMY  CG    A  +FD++ 
Sbjct: 7   GRLLRECGLSKSLSKGMEIHKKLAESGVDKDTY-LGNNLIQMYGNCGCVGKAREIFDKLI 65

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSL------QLFNVMPQKNDFSW---------------- 106
            RN +SW  M+  + + GH  ++L       L  + P    F W                
Sbjct: 66  DRNVYSWTIMLSAYAQNGHYMEALVLSYQMDLEGIRPNSVTFLWILGACSNLGDVETGRK 125

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                              ++  ++K  +L  A+ +F+ + R++ ++W ++I  + + G 
Sbjct: 126 IHARMVFLGWDTDTVVSTAILGMYSKCEKLGDAKKIFDSLRRKDVVSWTAIITAFSQLGR 185

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            R A+ LF E++ D V   + +      ++ AC  + ALE G +++   +  G   D  +
Sbjct: 186 PRVALELFWEMDLDGV---KPNESTFVNILAACTYMDALEDGDKLYKRAISCGYGADVFV 242

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           GS+ V +Y + G+                               + +A+  FD   + S+
Sbjct: 243 GSTAVTMYSRFGN-------------------------------LVEAKAAFDHLREKST 271

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN+++  YI +   ++AL L+ +M  +G   D  T   +L ACSSLG LE G+++H  
Sbjct: 272 GSWNAIVRAYIQHGHISQALSLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIH-- 329

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             ++G   D +  SA++  Y+K                               CG IE A
Sbjct: 330 -ARMGDKPDGLAGSAIVAMYAK-------------------------------CGGIEHA 357

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
              F  M + +++ WN++I G  Q     EALDL+  MN   L  D ++ +SV+ AC+  
Sbjct: 358 MTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACSGA 417

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             L  G  V AR+   GL+    +   LV+ + KCG + +
Sbjct: 418 KDLSEGRAVHARIVSRGLEVVVPLQNGLVNMFAKCGSLTL 457



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 214/490 (43%), Gaps = 105/490 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G +L+   +  G   + + + +  + MY R GN  +A   FD +  +
Sbjct: 211 ILAACTYMDALEDGDKLYKRAISCG-YGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREK 269

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------------- 99
           +  SWNA++  +++ GH  ++L L+  M                                
Sbjct: 270 STGSWNAIVRAYIQHGHISQALSLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIH 329

Query: 100 -----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                + +  + + +++ +AK G ++ A T F  M   N + WN++I  YV+    +EA+
Sbjct: 330 ARMGDKPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEAL 389

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            L+  +N   +E L+ D +  ++V+GAC+    L  G+ +H+ I+  GL+    L + LV
Sbjct: 390 DLYHAMN---LEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIVSRGLEVVVPLQNGLV 446

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           N++ KC                               G +  A  +F      ++V WNS
Sbjct: 447 NMFAKC-------------------------------GSLTLALEMFRGMASRNTVSWNS 475

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL-----SACSSLGFLEHGKQVHGH 329
           M++ +  + +   A  LF +M   G      T  S+L     SACSSL   + GK +H  
Sbjct: 476 MVTAFCQHGDGGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSACSSL---DQGKALHQR 532

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
               GV  D  VA+ LL  Y                      LLN +    + CG ++DA
Sbjct: 533 ITASGVDSDPTVATCLLTMY----------------------LLNAL----AKCGALDDA 566

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  +  K+++SW +MIVG +Q+     AL+LF  M    ++ D+ +  S++ AC++ 
Sbjct: 567 RAVFDGIRGKNVLSWTAMIVGYAQHARGDGALELFREMELDGIQADEITFTSILHACSHR 626

Query: 450 SSLELGEQVF 459
             + +G + F
Sbjct: 627 GLVRVGREYF 636



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 182/420 (43%), Gaps = 90/420 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKK--GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           LL +C++  ++  G+++H     K  G+  S +      + MY +CG    A+  F +M 
Sbjct: 312 LLGACSSLGALEEGERIHARMGDKPDGLAGSAI------VAMYAKCGGIEHAMTAFTKMS 365

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------PQKNDFS---- 105
             N   WNA+I G+++  H +++L L++ M                       D S    
Sbjct: 366 SSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEGRA 425

Query: 106 ----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N L++ FAK G L  A  +F  M  RN ++WNSM+  + ++G 
Sbjct: 426 VHARIVSRGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSWNSMVTAFCQHGD 485

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLA--ALEYGKQIHSHILVNGLDFDS 207
              A  LFKE+   L+E  +       +++  C+  A  +L+ GK +H  I  +G+D D 
Sbjct: 486 GGGAFELFKEM---LLEGGEPHEQTFTSILNFCSHSACSSLDQGKALHQRITASGVDSDP 542

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + + L+ +Y                          L++  A CG ++DAR VFD     
Sbjct: 543 TVATCLLTMY--------------------------LLNALAKCGALDDARAVFDGIRGK 576

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           + + W +MI GY  +     AL LF +M  +G+  D  T  S+L ACS  G +  G++  
Sbjct: 577 NVLSWTAMIVGYAQHARGDGALELFREMELDGIQADEITFTSILHACSHRGLVRVGREYF 636

Query: 328 GHACKVGVIDDVIVASA-----LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
               +  V D  I  SA     ++D  ++ G   +A ++    KV+  I    ++T+ SS
Sbjct: 637 ----RSMVEDHAIAPSAEHYNVVMDMLARAGRVGEAEEV---AKVFPAIKHVALMTLVSS 689


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 140/525 (26%), Positives = 235/525 (44%), Gaps = 121/525 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  LQ C        GK LH   LK+G     L   N LL MY++     DA  LFDEMP
Sbjct: 42  ANALQDCIQKDEPSRGKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMP 100

Query: 69  RRNCFSWNAMIEG-------------FMKLGHKEKSLQ---------------------- 93
            RN  S+  +I+G             F++L  +   L                       
Sbjct: 101 ERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWG 160

Query: 94  ----LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
               +F +  + N F    LI  ++  G +  AR +F+ +  ++ ++W  M+ C+  N  
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            +EA++LF ++    +   + + F  A+V  AC  L A + GK +H   L +  + D  +
Sbjct: 221 FKEALKLFSQMR---MVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYV 277

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G +L++LY K GD                               ++DARR F+       
Sbjct: 278 GVALLDLYTKSGD-------------------------------IDDARRAFEEIPKKDV 306

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W+ MI+ Y  +++  EA+ +F +MR+  VL +  T ASVL AC+++  L  G Q+H H
Sbjct: 307 IPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCH 366

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K+G+  DV V++AL+D Y+K G                               R+E++
Sbjct: 367 VIKIGLHSDVFVSNALMDVYAKCG-------------------------------RMENS 395

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F   P+++ ++WN++IVG  Q G   +AL LF NM +  ++  + + +S + ACA++
Sbjct: 396 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 455

Query: 450 SSLELGEQVFA------RVTIIG----------LDSDQIISTSLV 478
           ++LE G Q+ +      ++T +G          LD  Q   TS++
Sbjct: 456 AALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMI 500



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 176/382 (46%), Gaps = 65/382 (17%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F+WN+L++ + K+  L  A  LF++MP RN I++ ++I  Y  +    EA+ LF  L+  
Sbjct: 74  FAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR- 132

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             E  + + F+  T++         E G  IH+ I   G + ++ +G+            
Sbjct: 133 --EGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGT------------ 178

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                              ALI  Y+ CG+++ AR VFD       V W  M++ +  N+
Sbjct: 179 -------------------ALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAEND 219

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EAL LF +MR  G   +  T ASV  AC  L   + GK VHG A K     D+ V  
Sbjct: 220 CFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGV 279

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           ALLD Y+K G                                I+DA+  F  +P K +I 
Sbjct: 280 ALLDLYTKSG-------------------------------DIDDARRAFEEIPKKDVIP 308

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W+ MI   +Q+    EA+++F  M +  +  ++F+ ASV+ ACA +  L LG Q+   V 
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
            IGL SD  +S +L+D Y KCG
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCG 390



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 63/350 (18%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N+ +  + R GF+ ++ +L +E     V   + ++   A  +  C        GK +H  
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEFVGH-VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCE 63

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           IL  G                 C D  + N +LNM  + D  C               DA
Sbjct: 64  ILKRG----------------GCLDLFAWNILLNMYVKSDFLC---------------DA 92

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
            ++FD   + +++ + ++I GY  +    EA+ LF ++ R G   +     ++L    S 
Sbjct: 93  SKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVST 152

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
              E G  +H    K+G   +  V +AL+D YS                           
Sbjct: 153 DCGELGWGIHACIFKLGHESNAFVGTALIDAYS--------------------------- 185

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                CGR++ A+ +F  +  K ++SW  M+   ++N    EAL LF  M  +  + + F
Sbjct: 186 ----VCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNF 241

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + ASV  AC  + + ++G+ V         + D  +  +L+D Y K G I
Sbjct: 242 TFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDI 291



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 111/279 (39%), Gaps = 68/279 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +LQ+C T   +++G Q+H H +K G L+S + ++N L+ +Y +C             
Sbjct: 344 FASVLQACATMEGLNLGNQIHCHVIKIG-LHSDVFVSNALMDVYAKC------------- 389

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                             G  E S++LF   P +ND +WN +I G  + G+ + A  LF 
Sbjct: 390 ------------------GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFL 431

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M                                  L  R+Q      ++ + ACA LAA
Sbjct: 432 NM----------------------------------LEYRVQATEVTYSSALRACASLAA 457

Query: 188 LEYGKQIHS-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           LE G QIHS  +  + L F  VL +         G     + + +   EP     + ++ 
Sbjct: 458 LEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVW 517

Query: 247 GYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNE 284
                G ++ A ++ D      SVM W +++   + +N+
Sbjct: 518 LLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHND 556


>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 212/457 (46%), Gaps = 73/457 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           KQ+  H +  G++  T P++  L    +   G+   A LLF+++   N + WN MI GF 
Sbjct: 175 KQIQAHMIITGLITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMIRGFS 234

Query: 84  KLGHKEKSLQLFNVMPQKND--------FS--------------------W--------- 106
                   L  F  M ++          F+                    W         
Sbjct: 235 NAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFLTALEGESIHCAIWKIGFPCALL 294

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LI  ++  G L  AR +F++ P R+ ++W SMI  Y  + +  +A++LF   +S L
Sbjct: 295 VQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLF---DSML 351

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +  ++ +   + +V+ AC+    L  GK IH ++    L+    L ++++++Y KCG   
Sbjct: 352 LSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLV 411

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
           +A ++ + M   D F  +++++GYA  G++  AR+ FD     + V WN+MI+GY  NN+
Sbjct: 412 AAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQ 471

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             +A++LFH M   G++   +TL  VLSAC  LG+L+ G+ +H +  +            
Sbjct: 472 PKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIE------------ 519

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
                              + K    I+ N +I +Y+ CG I+ A  +F  MP + L+SW
Sbjct: 520 ------------------RKQKGTSVIIANALIDMYAKCGVIDAAARVFNGMPGRDLVSW 561

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
           NSMI   + +G   +AL +F  M     + D  +  S
Sbjct: 562 NSMIAACASHGHAKQALLMFGQMIHEGFKPDDITFES 598



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 176/377 (46%), Gaps = 35/377 (9%)

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
             A  G+++ A  LFN +   N   WN+MI  +         +  F ++  + VE +   
Sbjct: 201 ALADTGDIRHAHLLFNQIEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVE-MDTR 259

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           +F+ A +  +   L ALE G+ IH  I   G     ++ + L++ Y   G          
Sbjct: 260 SFVFA-LKASEQFLTALE-GESIHCAIWKIGFPCALLVQNGLIHFYSVHG---------- 307

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
                   CL               AR+VFD T     V W SMI GY +++  T+AL L
Sbjct: 308 --------CLVL-------------ARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKL 346

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  M  + V  +  T+ SVLSACS  G L  GK +H +  +  +   V + +A+LD Y K
Sbjct: 347 FDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVK 406

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G    A ++F  +   D     +M+  Y+  G +E A+  F  MP ++++SWN+MI G 
Sbjct: 407 CGCLVAAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGY 466

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV-FARVTIIGLDSD 470
           SQN  P +A+ LF +M    L   + +L  V+SAC  +  L+LG  +    +      + 
Sbjct: 467 SQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTS 526

Query: 471 QIISTSLVDFYCKCGFI 487
            II+ +L+D Y KCG I
Sbjct: 527 VIIANALIDMYAKCGVI 543



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 65/299 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+    + +GK +H  ++++  LN ++ + N +L MY++CG               
Sbjct: 365 VLSACSQKGDLSLGKSIH-EYVRRKNLNLSVNLMNAILDMYVKCG--------------- 408

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
            C                  + ++F+ M  K+ FSW  +++G+AK GEL+ AR  F+DMP
Sbjct: 409 -CLV---------------AAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMP 452

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           +RN ++WN+MI  Y +N   ++A+ LF  +   + E L      L  V+ AC  L  L+ 
Sbjct: 453 KRNVVSWNAMIAGYSQNNQPKKAIVLFHHM---VGEGLIPIENTLVCVLSACGQLGYLDL 509

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ IH + +       SV+ ++                              ALI  YA 
Sbjct: 510 GRLIHMYHIERKQKGTSVIIAN------------------------------ALIDMYAK 539

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           CG ++ A RVF+       V WNSMI+   S+    +ALL+F +M   G   D  T  S
Sbjct: 540 CGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFKPDDITFES 598


>gi|255553939|ref|XP_002518010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542992|gb|EEF44528.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 824

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 240/526 (45%), Gaps = 84/526 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT-DALLLFDEM 67
           A +L  C     I+VGK  H + +K G+   TL + N L+ MY +CG  + DA   F  +
Sbjct: 81  AVILPVCARMRDIYVGKSFHCYMIKTGMETHTL-VGNALVSMYAKCGLVSYDAYAAFQSI 139

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQ----KNDFSW- 106
             ++  SWNA+I GF +    + +L+LF                 V+P       D ++ 
Sbjct: 140 YHKDVVSWNAIIAGFSENKMVDSALRLFFFMLKTQIKPNHATIATVLPLLASLATDTAYL 199

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N L+S     G +K A  LF  M  R+ I+WN++I  +
Sbjct: 200 FGREIHCYILRHNESLADVSVCNALLSFHLMVGRVKEAELLFRRMELRDLISWNAIISGF 259

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
             NG   +++ LF+EL    +E  + D+  L +++ ACA L  L+ G++IHS++L +   
Sbjct: 260 ASNGEWSKSLELFQELL--YLESNEPDSVTLVSILPACAQLQNLKAGREIHSYVLRHPYL 317

Query: 205 F-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           + D+ +G+                               AL+S YA C  +  A   F  
Sbjct: 318 YQDTSVGN-------------------------------ALVSFYAKCNNLVAAYHTFLM 346

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 + WNSM+  +     + +   L H M   G+  D+ T+ ++L  C+++  ++  
Sbjct: 347 IPSRDLISWNSMLDAFAIGGRNAQFFKLLHWMHTEGIRPDSITILTILHFCANVLKVDKV 406

Query: 324 KQVHGHACKVGVID---DVIVASALLDTYSKRGMPSDACKLFSELK-VYDTILLNTMITV 379
           K+ H ++ + G++    +    +A+LDTY+K      A K+F  L    + +  N+MI+ 
Sbjct: 407 KETHCYSLRCGLLQSDFEPTTRNAMLDTYAKCSNVEYAFKVFQTLSDNRNLVTFNSMISG 466

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y +CG  +DA  IF  MP   L +WN M+ G ++N  P +A  LF  +    ++ D  ++
Sbjct: 467 YVNCGLYDDAYMIFEKMPASDLTTWNLMVRGCAENDCPDQAFSLFRELQARGMKPDAVTI 526

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            S++ +CA  +S+ L +Q    V     D D  +  +L+D Y KCG
Sbjct: 527 ISLLPSCAQTASVHLMKQCHGYVIRACFD-DAHLEGALLDLYAKCG 571



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 227/497 (45%), Gaps = 80/497 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL S  T  +   G+++H + L+     + + + N LL  ++  G   +A LLF  M  R
Sbjct: 188 LLASLATDTAYLFGREIHCYILRHNESLADVSVCNALLSFHLMVGRVKEAELLFRRMELR 247

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMPQ------------- 100
           +  SWNA+I GF   G   KSL+LF                 +++P              
Sbjct: 248 DLISWNAIISGFASNGEWSKSLELFQELLYLESNEPDSVTLVSILPACAQLQNLKAGREI 307

Query: 101 -----------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                      ++    N L+S +AK   L  A   F  +P R+ I+WNSM+  +   G 
Sbjct: 308 HSYVLRHPYLYQDTSVGNALVSFYAKCNNLVAAYHTFLMIPSRDLISWNSMLDAFAIGG- 366

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL---DFD 206
            R A + FK L+    E ++ D+  + T++  CA++  ++  K+ H + L  GL   DF+
Sbjct: 367 -RNA-QFFKLLHWMHTEGIRPDSITILTILHFCANVLKVDKVKETHCYSLRCGLLQSDFE 424

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDARRVFDRTT 265
               +++++ Y KC +   A +V   + +  +    +++ISGY NCG  +DA  +F++  
Sbjct: 425 PTTRNAMLDTYAKCSNVEYAFKVFQTLSDNRNLVTFNSMISGYVNCGLYDDAYMIFEKMP 484

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            +    WN M+ G   N+   +A  LF +++  G+  DA T+ S+L +C+    +   KQ
Sbjct: 485 ASDLTTWNLMVRGCAENDCPDQAFSLFRELQARGMKPDAVTIISLLPSCAQTASVHLMKQ 544

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            HG+  +    DD  +  ALLD Y+K                               CG 
Sbjct: 545 CHGYVIR-ACFDDAHLEGALLDLYAK-------------------------------CGD 572

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +  A  +F + P + L+ + +M+ G + +G   EAL +F +M  L ++ D   + +V+SA
Sbjct: 573 LGYAFKLFHSNPGRDLVVFTAMVGGYAMHGMGEEALRIFSDMLDLGIKPDHIVITAVLSA 632

Query: 446 CANISSLELGEQVFARV 462
           C +   ++ G ++F  +
Sbjct: 633 CCHAGLVDEGLKIFHSI 649



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/488 (22%), Positives = 204/488 (41%), Gaps = 118/488 (24%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNC----FSWNAMIEGFMKLG-HKEKSLQLFN-------- 96
           MY +CG  +D+  LF E+   NC      WN ++ GF     H  ++   FN        
Sbjct: 16  MYAKCGAFSDSNKLFGEI--SNCSHDPIFWNILLSGFAASPIHDAQTFSFFNRMRVANQV 73

Query: 97  ---------VMP-----------------------QKNDFSWNMLISGFAKAGELKT-AR 123
                    ++P                       + +    N L+S +AK G +   A 
Sbjct: 74  KPTSVTAAVILPVCARMRDIYVGKSFHCYMIKTGMETHTLVGNALVSMYAKCGLVSYDAY 133

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
             F  +  ++ ++WN++I  +  N     A+RLF  +   L  +++ +   +ATV+   A
Sbjct: 134 AAFQSIYHKDVVSWNAIIAGFSENKMVDSALRLFFFM---LKTQIKPNHATIATVLPLLA 190

Query: 184 DLA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            LA   A  +G++IH +IL +    +S+   S+ N                         
Sbjct: 191 SLATDTAYLFGREIHCYILRHN---ESLADVSVCN------------------------- 222

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
             AL+S +   G++ +A  +F R      + WN++ISG+ SN E +++L LF ++     
Sbjct: 223 --ALLSFHLMVGRVKEAELLFRRMELRDLISWNAIISGFASNGEWSKSLELFQELLYLES 280

Query: 301 LE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
            E D+ TL S+L AC+ L  L+ G+++H +  +   +                       
Sbjct: 281 NEPDSVTLVSILPACAQLQNLKAGREIHSYVLRHPYL----------------------- 317

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                    DT + N +++ Y+ C  +  A H F  +P++ LISWNSM+   +  G   +
Sbjct: 318 -------YQDTSVGNALVSFYAKCNNLVAAYHTFLMIPSRDLISWNSMLDAFAIGGRNAQ 370

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA---RVTIIGLDSDQIISTS 476
              L   M+   +R D  ++ +++  CAN+  ++  ++      R  ++  D +     +
Sbjct: 371 FFKLLHWMHTEGIRPDSITILTILHFCANVLKVDKVKETHCYSLRCGLLQSDFEPTTRNA 430

Query: 477 LVDFYCKC 484
           ++D Y KC
Sbjct: 431 MLDTYAKC 438



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 155/399 (38%), Gaps = 104/399 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++  G+++H + L+   L     + N L+  Y +C N   A   F  +
Sbjct: 288 LVSILPACAQLQNLKAGREIHSYVLRHPYLYQDTSVGNALVSFYAKCNNLVAAYHTFLMI 347

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P R+  SWN+M++ F   G   +  +L + M                             
Sbjct: 348 PSRDLISWNSMLDAFAIGGRNAQFFKLLHWMHTEGIRPDSITILTILHFCANVLKVDKVK 407

Query: 101 ------------KNDF---SWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCY 144
                       ++DF   + N ++  +AK   ++ A  +F  +   RN + +NSMI  Y
Sbjct: 408 ETHCYSLRCGLLQSDFEPTTRNAMLDTYAKCSNVEYAFKVFQTLSDNRNLVTFNSMISGY 467

Query: 145 VRNGFAREAVRLFKELNS-----------------------DLVERLQC-----DAFILA 176
           V  G   +A  +F+++ +                        L   LQ      DA  + 
Sbjct: 468 VNCGLYDDAYMIFEKMPASDLTTWNLMVRGCAENDCPDQAFSLFRELQARGMKPDAVTII 527

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           +++ +CA  A++   KQ H +++    D D+ L  +L++LY KCGD   A ++ +     
Sbjct: 528 SLLPSCAQTASVHLMKQCHGYVIRACFD-DAHLEGALLDLYAKCGDLGYAFKLFHSNPGR 586

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D    +A++ GYA  G   +A R+F    D                              
Sbjct: 587 DLVVFTAMVGGYAMHGMGEEALRIFSDMLDL----------------------------- 617

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
             G+  D   + +VLSAC   G ++ G ++  H+ + G+
Sbjct: 618 --GIKPDHIVITAVLSACCHAGLVDEGLKIF-HSIEKGI 653



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 61/239 (25%)

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           N+Y KCG F+ +N+               L    +NC                  + WN 
Sbjct: 15  NMYAKCGAFSDSNK---------------LFGEISNCSH--------------DPIFWNI 45

Query: 275 MISGYISNN-EDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           ++SG+ ++   D +    F++MR  N V   + T A +L  C+ +  +  GK  H +  K
Sbjct: 46  LLSGFAASPIHDAQTFSFFNRMRVANQVKPTSVTAAVILPVCARMRDIYVGKSFHCYMIK 105

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
            G+    +V +AL+  Y+K G+ S                               DA   
Sbjct: 106 TGMETHTLVGNALVSMYAKCGLVS------------------------------YDAYAA 135

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           F+++ +K ++SWN++I G S+N     AL LF  M K  ++ +  ++A+V+   A++++
Sbjct: 136 FQSIYHKDVVSWNAIIAGFSENKMVDSALRLFFFMLKTQIKPNHATIATVLPLLASLAT 194



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DL 432
           +Y+ CG   D+  +F  + N S   I WN ++ G +   SPI     F   N++     +
Sbjct: 16  MYAKCGAFSDSNKLFGEISNCSHDPIFWNILLSGFA--ASPIHDAQTFSFFNRMRVANQV 73

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +    + A ++  CA +  + +G+     +   G+++  ++  +LV  Y KCG +  D Y
Sbjct: 74  KPTSVTAAVILPVCARMRDIYVGKSFHCYMIKTGMETHTLVGNALVSMYAKCGLVSYDAY 133

Query: 493 YLMQ 496
              Q
Sbjct: 134 AAFQ 137


>gi|255553863|ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542954|gb|EEF44490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 483

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 221/490 (45%), Gaps = 108/490 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT-DALLLFDEM 67
           A LLQ+C    S + G Q+H H +K G L +   + N LL +Y +      +   +FD +
Sbjct: 55  ASLLQTCTKVVSFNHGLQIHAHVVKSG-LETDRFVGNSLLALYFKLSTDFFETRRVFDGL 113

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----NVMPQKNDFSWN---------------- 107
             R+  SW +MI G++K    +K+L LF    +V    N F+ +                
Sbjct: 114 YFRDVISWTSMITGYVKGEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGK 173

Query: 108 -----MLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                ++I GF               +  EL  AR LF+++   +AI W S+I  Y RN 
Sbjct: 174 CFHCVIMIRGFHSNHVIGSALIDLYGRNYELDDARRLFDELLEPDAICWTSVISAYTRND 233

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+  F  +   L   L  D F   TV+ AC +L  L+ GK++H+ ++ +G   + V
Sbjct: 234 MYDKALGFFYLMQRKL--GLAPDGFTFGTVLTACGNLRRLKQGKEVHAKLITSGFSGNVV 291

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + SSLV++YGK                               CG +++++RVFDR +  +
Sbjct: 292 VESSLVDMYGK-------------------------------CGLVDESQRVFDRMSVKN 320

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV W++++ G+  N +    + +F +M   G  +D  +  +VL AC+ L  +  GK+VH 
Sbjct: 321 SVSWSALLGGFCQNGDFESVIRIFREM---GEADDLYSFGTVLRACAGLAAVRQGKEVHC 377

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              + G   DVI+ SAL+D Y+K                               CG I+ 
Sbjct: 378 QYVRRGGWRDVIIESALVDLYAK-------------------------------CGCIDF 406

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  IF  M  ++LI+WNSMI G +QNG   EAL +F  M K   + D  +   V+ AC++
Sbjct: 407 AHRIFTKMTVRNLITWNSMICGFAQNGWAEEALRIFDEMVKEGTKPDYITFIGVLFACSH 466

Query: 449 ISSLELGEQV 458
                L + +
Sbjct: 467 TDREPLAKGI 476



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 149/329 (45%), Gaps = 62/329 (18%)

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           LNS     +    FI A+++  C  + +  +G QIH+H++ +GL+ D  +G+SL+ LY  
Sbjct: 39  LNSIDSREISNKPFIYASLLQTCTKVVSFNHGLQIHAHVVKSGLETDRFVGNSLLALY-- 96

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                         K   DF                + RRVFD       + W SMI+GY
Sbjct: 97  -------------FKLSTDFF---------------ETRRVFDGLYFRDVISWTSMITGY 128

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
           +   +  +AL LF +M   GV  +A TL++V+ AC+ LG L  GK  H      G   + 
Sbjct: 129 VKGEKPKKALDLFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHSNH 188

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           ++ SAL+D Y +     DA +LF EL   D                              
Sbjct: 189 VIGSALIDLYGRNYELDDARRLFDELLEPDA----------------------------- 219

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQV 458
             I W S+I   ++N    +AL  F  M  KL L  D F+  +V++AC N+  L+ G++V
Sbjct: 220 --ICWTSVISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGNLRRLKQGKEV 277

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            A++   G   + ++ +SLVD Y KCG +
Sbjct: 278 HAKLITSGFSGNVVVESSLVDMYGKCGLV 306



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 139/295 (47%), Gaps = 47/295 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++++C    ++ +GK  H   + +G  +S   I + L+ +Y R     DA  LFDE+
Sbjct: 156 LSAVIKACTDLGTLMLGKCFHCVIMIRG-FHSNHVIGSALIDLYGRNYELDDARRLFDEL 214

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
              +   W ++I  + +    +K+L  F +M +K                          
Sbjct: 215 LEPDAICWTSVISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGNLRRLKQG 274

Query: 102 ---------NDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                    + FS N+++       + K G +  ++ +F+ M  +N+++W++++  + +N
Sbjct: 275 KEVHAKLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMSVKNSVSWSALLGGFCQN 334

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G     +R+F+E+          D +   TV+ ACA LAA+  GK++H   +  G   D 
Sbjct: 335 GDFESVIRIFREMGE------ADDLYSFGTVLRACAGLAAVRQGKEVHCQYVRRGGWRDV 388

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           ++ S+LV+LY KCG  + A+++   M   +    +++I G+A  G   +A R+FD
Sbjct: 389 IIESALVDLYAKCGCIDFAHRIFTKMTVRNLITWNSMICGFAQNGWAEEALRIFD 443



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%)

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
           ++P+ +L +    I+G  ++G+ + ALD+  +++  ++    F  AS++  C  + S   
Sbjct: 10  SLPSFNLKNKEIKIIGFCKSGALLHALDILNSIDSREISNKPFIYASLLQTCTKVVSFNH 69

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           G Q+ A V   GL++D+ +  SL+  Y K
Sbjct: 70  GLQIHAHVVKSGLETDRFVGNSLLALYFK 98


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 223/487 (45%), Gaps = 79/487 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL--- 92
           I   T+   N +L  Y +      A+  F++M  R+  SWN MI    + G   ++L   
Sbjct: 189 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLV 248

Query: 93  -----------------------QLFNV-------------MPQKNDFSWNMLISGFAKA 116
                                  +LF++             +PQ + +  + LI  +AK 
Sbjct: 249 VEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 308

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K A+ +FN +  RN+++W  +I   ++     ++V LF ++ ++L   +  D F LA
Sbjct: 309 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL---MAIDQFALA 365

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C +   L  G+Q+HS  L +G +   V+ +SL++LY KCGD  +A  V + M E 
Sbjct: 366 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 425

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    +++I+ Y+  G +  AR  FD     +++ WN+M+  YI +  + + L ++  M 
Sbjct: 426 DIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAML 485

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            +  V  D  T  ++   C+ +G  + G Q+ GH  K G+I +V VA             
Sbjct: 486 SQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA------------- 532

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N  IT+YS CGRI +A+ +F  +  K ++SWN+MI G SQ+G
Sbjct: 533 ------------------NAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 574

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A   F +M     + D  S  +V+S C++   ++ G+  F  +T +       IS 
Sbjct: 575 MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRV-----HGISP 629

Query: 476 SLVDFYC 482
            L  F C
Sbjct: 630 GLEHFSC 636



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 249/558 (44%), Gaps = 113/558 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG------------ 55
           LA  L+SC +  ++   + LH   +  G L S + + N LL  Y+ CG            
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVG-LASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 56  --NP------------------TDALLLFDEMPRRNCFSWN------------------- 76
              P                  +DA  LFD MPRR+  SWN                   
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGAL 141

Query: 77  --------------------------AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
                                     A+++ F++ G+ + + +LF+ + +   F  N ++
Sbjct: 142 GCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSML 201

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +G+AK   +  A   F DM  R+ ++WN MI    ++G  REA+ L  E++   V   + 
Sbjct: 202 AGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV---RL 258

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+    + + ACA L +L +GKQ+H+                               +V+
Sbjct: 259 DSTTYTSSLTACARLFSLGWGKQLHA-------------------------------KVI 287

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
             + + D +  SALI  YA CG   +A+RVF+   D +SV W  +I G +     ++++ 
Sbjct: 288 RSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVE 347

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF++MR   +  D   LA+++S C +   L  G+Q+H    K G    ++V+++L+  Y+
Sbjct: 348 LFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYA 407

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G   +A  +FS +   D +   +MIT YS  G I  A+  F  M  ++ I+WN+M+  
Sbjct: 408 KCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGA 467

Query: 411 LSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
             Q+G+  + L ++  M ++ D+  D  +  ++   CA+I + +LG+Q+       GL  
Sbjct: 468 YIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLIL 527

Query: 470 DQIISTSLVDFYCKCGFI 487
           +  ++ + +  Y KCG I
Sbjct: 528 NVSVANAAITMYSKCGRI 545



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 213/471 (45%), Gaps = 75/471 (15%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+ M++RCG    A  LF ++ R   F  N+M+ G+ KL   + +++ F  M +++
Sbjct: 165 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 224

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRN-------------------AIAWNSMIHC 143
             SWNM+I+  +++G ++ A  L  +M R+                    ++ W   +H 
Sbjct: 225 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 284

Query: 144 --------------------YVRNGFAREAVRLFKEL----------------------- 160
                               Y + G  +EA R+F  L                       
Sbjct: 285 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 344

Query: 161 -----NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
                N    E +  D F LAT+I  C +   L  G+Q+HS  L +G +   V+ +SL++
Sbjct: 345 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 404

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           LY KCGD  +A  V + M E D    +++I+ Y+  G +  AR  FD     +++ WN+M
Sbjct: 405 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAM 464

Query: 276 ISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +  YI +  + + L ++  M  +  V  D  T  ++   C+ +G  + G Q+ GH  K G
Sbjct: 465 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 524

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +I +V VA+A +  YSK G  S+A KLF  L   D +  N MIT YS  G  + A   F 
Sbjct: 525 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 584

Query: 395 TMPNKS----LISWNSMIVGLSQNGSPIEA---LDLFCNMNKLDLRMDKFS 438
            M +K      IS+ +++ G S +G   E     D+   ++ +   ++ FS
Sbjct: 585 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 635



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 151/315 (47%), Gaps = 26/315 (8%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-M 233
           LA  + +C    AL   + +H  ++  GL     L ++L++ Y  CG  + A ++L   +
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           KEP+    + +++GYA  G ++DA  +FDR        WN+++S                
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMS---------------- 126

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
                    D S  A    +C +LG  E   Q+ G   K     D  V +AL+D + + G
Sbjct: 127 ---------DTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 177

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
               A +LFS+++       N+M+  Y+    I+ A   F  M  + ++SWN MI  LSQ
Sbjct: 178 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 237

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           +G   EAL L   M++  +R+D  +  S ++ACA + SL  G+Q+ A+V       D  +
Sbjct: 238 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 297

Query: 474 STSLVDFYCKCGFIK 488
           +++L++ Y KCG  K
Sbjct: 298 ASALIELYAKCGSFK 312



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 174/402 (43%), Gaps = 45/402 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C     + +G+QLH   LK G  N  + ++N L+ +Y +CG+  +A  +F  M
Sbjct: 364 LATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSM 422

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW +MI  + ++G+  K+ + F+ M  +N  +W                     
Sbjct: 423 SERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITW--------------------- 461

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     N+M+  Y+++G   + ++++  + S   + +  D     T+   CAD+ A
Sbjct: 462 ----------NAMLGAYIQHGAEEDGLKMYSAMLSQ--KDVTPDWVTYVTLFRGCADIGA 509

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            + G QI  H +  GL  +  + ++ + +Y KCG  + A ++ +++   D    +A+I+G
Sbjct: 510 NKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITG 569

Query: 248 YANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLE 302
           Y+  G    A + FD    +      + + +++SG   +    E  L F  M R +G+  
Sbjct: 570 YSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISP 629

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDAC 359
                + ++      G L   K +     K+ +     V  ALL      G   +   A 
Sbjct: 630 GLEHFSCMVDLLGRAGHLTEAKDLID---KMPMKPTAEVWGALLSACKIHGNDELAELAA 686

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           K   EL   D+     +  +YS  G+ +D+  + + M +K +
Sbjct: 687 KHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 728


>gi|147801708|emb|CAN65641.1| hypothetical protein VITISV_018600 [Vitis vinifera]
          Length = 869

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 145/539 (26%), Positives = 240/539 (44%), Gaps = 106/539 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +++ C    +   G+ LH H +K G+ N     AN LL MY+      DA  LFDE 
Sbjct: 6   IVSVIRQCGRXRAFRHGRSLHAHIIKLGVFNDVF-FANNLLAMYVDISLLKDARRLFDET 64

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSW---------------- 106
             RN  +W  MI  +   G  + +L+ +  M +      N F +                
Sbjct: 65  LERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESG 124

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N L+  + K G L +AR +F+D+   ++ +WN+MI  Y + 
Sbjct: 125 KLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKE 184

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL-VNGLDFD 206
           G   EAV LF ++     + +  ++ I     G    L AL +   +H   L ++G  F 
Sbjct: 185 GLMEEAVNLFYQMPEP--DTVSWNSIIAG--FGCKESLGALRFVCMMHRKGLKLDGFTFS 240

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-----------FCLSALISGYANCGKMN 255
             L +        CG F    Q+L M+K+              F  SAL+  Y+NC +++
Sbjct: 241 CALKT--------CGCF----QLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNELD 288

Query: 256 DARRVFDRTTDTSS------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           +A ++FD  +  S+       +WNSM+SGY+ N +++ A+ L  ++   G   D+ T  S
Sbjct: 289 EAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSLGARVDSYTFGS 348

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
            L  C +L     G QV G A   G   D +V S L+D                      
Sbjct: 349 ALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILID---------------------- 386

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                    +Y++ G+I+DA  +F  +P K ++ W+S+I   ++ G       LF +M  
Sbjct: 387 ---------LYANDGKIKDALRLFHRLPEKDIVVWSSLISWYTKMGLNSLVFSLFRDMVN 437

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           LD+ +D+F ++SV+ AC+++  L  G+QV +     G +S++I  TSL+D Y KCG I+
Sbjct: 438 LDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIE 496



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 151/329 (45%), Gaps = 48/329 (14%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           + +VI  C    A  +G+ +H+HI+                   K G FN          
Sbjct: 6   IVSVIRQCGRXRAFRHGRSLHAHII-------------------KLGVFN---------- 36

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
             D F  + L++ Y +   + DARR+FD T + +   W +MIS Y S+     AL  + +
Sbjct: 37  --DVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQ 94

Query: 295 MRR------NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           M        NG L  A     VL AC  +G LE GK +HG   +  +  D ++ + LLD 
Sbjct: 95  MLESKSETPNGFLYSA-----VLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDM 149

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G  S A K+F ++    +   NTMI+ Y   G +E+A ++F  MP    +SWNS+I
Sbjct: 150 YVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSII 209

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G     S + AL   C M++  L++D F+ +  +  C     L + +Q+   V   G  
Sbjct: 210 AGFGCKES-LGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFG 268

Query: 469 SDQIISTSLVDFYCKCG----FIKM-DEY 492
           S    +++LVD Y  C      IKM DEY
Sbjct: 269 SCCFTASALVDSYSNCNELDEAIKMFDEY 297



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 119/507 (23%), Positives = 197/507 (38%), Gaps = 147/507 (28%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD----- 65
           +L++C     +  GK +H    +  +   T+ + N LL MY++CG+ + A  +FD     
Sbjct: 111 VLKACGLVGDLESGKLIHGRVFRANLGFDTV-LMNTLLDMYVKCGSLSSARKVFDDILCP 169

Query: 66  --------------------------EMPRRNCFSWNAMIEGFMKLGHKEK--SLQLFNV 97
                                     +MP  +  SWN++I GF   G KE   +L+   +
Sbjct: 170 SSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGF---GCKESLGALRFVCM 226

Query: 98  MPQKN---------------------------------------DFSWNMLISGFAKAGE 118
           M +K                                         F+ + L+  ++   E
Sbjct: 227 MHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNE 286

Query: 119 LKTARTLFNDMPRRNA------IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           L  A  +F++    +A        WNSM+  YV N     A+ L  +++S L  R+  D+
Sbjct: 287 LDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHS-LGARV--DS 343

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           +   + +  C +L     G Q+    + +G + D V+GS L++LY               
Sbjct: 344 YTFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLY--------------- 388

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                           AN GK+ DA R+F R  +   V+W+S+IS Y     ++    LF
Sbjct: 389 ----------------ANDGKIKDALRLFHRLPEKDIVVWSSLISWYTKMGLNSLVFSLF 432

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             M    +  D   ++SVL ACSSL  L  GKQVH    K G   + I  ++L+D Y+K 
Sbjct: 433 RDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAK- 491

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                         CG IED   +F     +  + +  +I+G  
Sbjct: 492 ------------------------------CGEIEDGLALFYCTSERDTVCYTGIIMGCG 521

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSL 439
           QNG  +EA+  F  M +L L+ ++ + 
Sbjct: 522 QNGRAMEAVGFFQEMIELGLKPNEITF 548



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 30/183 (16%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D   + SV+  C       HG+ +H H  K+GV +DV  A+ LL  Y    +  DA +LF
Sbjct: 2   DLHRIVSVIRQCGRXRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLF 61

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            E    +     TMI+ YSS GR + A   +  M               S++ +P     
Sbjct: 62  DETLERNVATWTTMISAYSSSGRPDTALKFYVQMLE-------------SKSETP----- 103

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
                       + F  ++V+ AC  +  LE G+ +  RV    L  D ++  +L+D Y 
Sbjct: 104 ------------NGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYV 151

Query: 483 KCG 485
           KCG
Sbjct: 152 KCG 154


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 223/487 (45%), Gaps = 79/487 (16%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL--- 92
           I   T+   N +L  Y +      A+  F++M  R+  SWN MI    + G   ++L   
Sbjct: 199 IERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLV 258

Query: 93  -----------------------QLFNV-------------MPQKNDFSWNMLISGFAKA 116
                                  +LF++             +PQ + +  + LI  +AK 
Sbjct: 259 VEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKC 318

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G  K A+ +FN +  RN+++W  +I   ++     ++V LF ++ ++L   +  D F LA
Sbjct: 319 GSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL---MAIDQFALA 375

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           T+I  C +   L  G+Q+HS  L +G +   V+ +SL++LY KCGD  +A  V + M E 
Sbjct: 376 TLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER 435

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
           D    +++I+ Y+  G +  AR  FD     +++ WN+M+  YI +  + + L ++  M 
Sbjct: 436 DIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAML 495

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            +  V  D  T  ++   C+ +G  + G Q+ GH  K G+I +V VA             
Sbjct: 496 SQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVA------------- 542

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N  IT+YS CGRI +A+ +F  +  K ++SWN+MI G SQ+G
Sbjct: 543 ------------------NAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHG 584

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              +A   F +M     + D  S  +V+S C++   ++ G+  F  +T +       IS 
Sbjct: 585 MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRV-----HGISP 639

Query: 476 SLVDFYC 482
            L  F C
Sbjct: 640 GLEHFSC 646



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 209/413 (50%), Gaps = 35/413 (8%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            A+++ F++ G+ + + +LF+ + +   F  N +++G+AK   +  A   F DM  R+ +
Sbjct: 177 TALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVV 236

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN MI    ++G  REA+ L  E++   V   + D+    + + ACA L +L +GKQ+H
Sbjct: 237 SWNMMIAALSQSGRVREALGLVVEMHRKGV---RLDSTTYTSSLTACARLFSLGWGKQLH 293

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +                               +V+  + + D +  SALI  YA CG   
Sbjct: 294 A-------------------------------KVIRSLPQIDPYVASALIELYAKCGSFK 322

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A+RVF+   D +SV W  +I G +     ++++ LF++MR   +  D   LA+++S C 
Sbjct: 323 EAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCF 382

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +   L  G+Q+H    K G    ++V+++L+  Y+K G   +A  +FS +   D +   +
Sbjct: 383 NRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTS 442

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRM 434
           MIT YS  G I  A+  F  M  ++ I+WN+M+    Q+G+  + L ++  M ++ D+  
Sbjct: 443 MITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTP 502

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           D  +  ++   CA+I + +LG+Q+       GL  +  ++ + +  Y KCG I
Sbjct: 503 DWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRI 555



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 213/471 (45%), Gaps = 75/471 (15%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           +   L+ M++RCG    A  LF ++ R   F  N+M+ G+ KL   + +++ F  M +++
Sbjct: 175 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERD 234

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRN-------------------AIAWNSMIHC 143
             SWNM+I+  +++G ++ A  L  +M R+                    ++ W   +H 
Sbjct: 235 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 294

Query: 144 --------------------YVRNGFAREAVRLFKEL----------------------- 160
                               Y + G  +EA R+F  L                       
Sbjct: 295 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 354

Query: 161 -----NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
                N    E +  D F LAT+I  C +   L  G+Q+HS  L +G +   V+ +SL++
Sbjct: 355 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 414

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           LY KCGD  +A  V + M E D    +++I+ Y+  G +  AR  FD     +++ WN+M
Sbjct: 415 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAM 474

Query: 276 ISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +  YI +  + + L ++  M  +  V  D  T  ++   C+ +G  + G Q+ GH  K G
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 534

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +I +V VA+A +  YSK G  S+A KLF  L   D +  N MIT YS  G  + A   F 
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 395 TMPNKS----LISWNSMIVGLSQNGSPIEA---LDLFCNMNKLDLRMDKFS 438
            M +K      IS+ +++ G S +G   E     D+   ++ +   ++ FS
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 224/491 (45%), Gaps = 76/491 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L+SC +  ++   + LH   +  G L S + + N LL  Y  CG  +DA  L    
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVG-LASAVFLQNTLLHAYFSCGALSDARRL---- 61

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                     L   + + N  + N++++G+AK G L  A  LF+
Sbjct: 62  --------------------------LRADIKEPNVITHNIMMNGYAKQGSLSDAEELFD 95

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACA 183
            MPRR+  +WN+++  Y       +A R    L + +      D    AF    V+ +C 
Sbjct: 96  RMPRRDVASWNTLMSGYF------QARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCG 149

Query: 184 DLAALEYGKQIHSHILVNGLDF--DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
            L   E   Q+    L    DF  D  + ++LV+++ +CG  + A+++ + ++ P  FC 
Sbjct: 150 ALGCRELAPQLLG--LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCR 207

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +++++GYA    ++ A   F+   +   V WN MI+    +    EAL L  +M R GV 
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D++T  S L+AC+ L  L  GKQ+H                                K+
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHA-------------------------------KV 296

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
              L   D  + + +I +Y+ CG  ++AK +F ++ +++ +SW  +I G  Q     +++
Sbjct: 297 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 356

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M    + +D+F+LA++IS C N   L LG Q+ +     G +   ++S SL+  Y
Sbjct: 357 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLY 416

Query: 482 CKCGFIKMDEY 492
            KCG ++  E+
Sbjct: 417 AKCGDLQNAEF 427



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/479 (21%), Positives = 204/479 (42%), Gaps = 57/479 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA L+  C     + +G+QLH   LK G  N  + ++N L+ +Y +CG+  +A  +F  M
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSG-HNRAIVVSNSLISLYAKCGDLQNAEFVFSSM 432

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW +MI  + ++G+  K+ + F+ M  +N  +W                     
Sbjct: 433 SERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITW--------------------- 471

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                     N+M+  Y+++G   + ++++  + S   + +  D     T+   CAD+ A
Sbjct: 472 ----------NAMLGAYIQHGAEEDGLKMYSAMLSQ--KDVTPDWVTYVTLFRGCADIGA 519

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            + G QI  H +  GL  +  + ++ + +Y KCG  + A ++ +++   D    +A+I+G
Sbjct: 520 NKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITG 579

Query: 248 YANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLE 302
           Y+  G    A + FD    +      + + +++SG   +    E  L F  M R +G+  
Sbjct: 580 YSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISP 639

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDAC 359
                + ++      G L   K +     K+ +     V  ALL      G   +   A 
Sbjct: 640 GLEHFSCMVDLLGRAGHLTEAKDLID---KMPMKPTAEVWGALLSACKIHGNDELAELAA 696

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL-----ISW----NSMIVG 410
           K   EL   D+     +  +YS  G+ +D+  + + M +K +      SW    N + V 
Sbjct: 697 KHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVF 756

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
            + + S  + + +    NKLD  M+K +    +   +  S +   E++     I+ L +
Sbjct: 757 KADDVSHPQVIAI---RNKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPA 812


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 210/420 (50%), Gaps = 70/420 (16%)

Query: 33  KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92
           +KG   S   + N L+ MY +C    +A+ +F+ +P     SWN +I GF + G   K++
Sbjct: 1   RKG-FGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAV 59

Query: 93  QLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           ++ ++M +     N+ +++ L++   KA ++ +AR +F+ + R +   WN+++  Y +  
Sbjct: 60  EVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEE 119

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             ++ + LF+ +     + +Q D   LA ++ +C+ L  L++G+Q+HS  +   L  D  
Sbjct: 120 QHQDTIELFRRMQH---QNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMF 176

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S LV++Y K                               CG++  AR +F++ T+  
Sbjct: 177 VASGLVDMYSK-------------------------------CGQIGIARSIFNKMTERD 205

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNS+ISG   ++ + EA   F +MR NG++   S+ AS++++CS L  + HG+Q+H 
Sbjct: 206 VVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHA 265

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +V V SAL+D Y+K G   DA +LF                          
Sbjct: 266 QVMKDGYDQNVYVGSALIDMYAKCGNMDDA-RLF-------------------------- 298

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
               F TM  K++++WN MI G +QNG   +A++LF  M   + + D  +  +V++ C++
Sbjct: 299 ----FDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSH 354



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 145/277 (52%), Gaps = 35/277 (12%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L+  +G+ G    A +VL++M+E    P++   S L++       ++ AR +FD+ +  S
Sbjct: 45  LITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPS 104

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              WN+++SGY    +  + + LF +M+   V  D +TLA +LS+CS LG L+ G+QVH 
Sbjct: 105 VTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHS 164

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            + +  + +D+ VAS L+D YSK                               CG+I  
Sbjct: 165 ASVRFLLHNDMFVASGLVDMYSK-------------------------------CGQIGI 193

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ IF  M  + ++ WNS+I GL+ +    EA D F  M +  +   + S AS+I++C+ 
Sbjct: 194 ARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR 253

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +SS+  G Q+ A+V   G D +  + ++L+D Y KCG
Sbjct: 254 LSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCG 290



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 118/282 (41%), Gaps = 66/282 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L SC+    +  G+Q+H   ++  +L++ + +A+ L+ MY +CG    A  +F++M
Sbjct: 143 LAVILSSCSKLGILDFGRQVHSASVRF-LLHNDMFVASGLVDMYSKCGQIGIARSIFNKM 201

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMP---------------------- 99
             R+   WN++I G       +++   F       +MP                      
Sbjct: 202 TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGR 261

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       +N +  + LI  +AK G +  AR  F+ M  +N +AWN MIH Y +NG
Sbjct: 262 QIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNG 321

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +AV LF+ +   L    + DA     V+  C+           HS ++   + F + 
Sbjct: 322 LGDKAVELFEYM---LTTEQKPDAVTFIAVLTGCS-----------HSGLVDKAMAFFNS 367

Query: 209 LGSS------------LVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +S            L++  G+ G F     +++ M   DD
Sbjct: 368 MENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDD 409



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 35/191 (18%)

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS---SCGR--- 385
           + G   D  V ++L+D Y+K     +A K+F  L     +  N +IT +    SC +   
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 386 -----------------------------IEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
                                        +  A+ +F  +   S+ +WN+++ G  Q   
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQ 120

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
             + ++LF  M   +++ D+ +LA ++S+C+ +  L+ G QV +      L +D  +++ 
Sbjct: 121 HQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASG 180

Query: 477 LVDFYCKCGFI 487
           LVD Y KCG I
Sbjct: 181 LVDMYSKCGQI 191


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 215/485 (44%), Gaps = 105/485 (21%)

Query: 40  TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM- 98
           +L + N LL M++R GN  DA  +F  M +RN FSWN ++ G+ K G  +++L L++ M 
Sbjct: 140 SLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRML 199

Query: 99  -----PQKNDFSW---------------------------------NMLISGFAKAGELK 120
                P    F                                   N LI+ + K G++ 
Sbjct: 200 WVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVN 259

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           TAR +F+ MP R+ I+WN+MI  Y  NG   E +RLF  +    V+    D   + +VI 
Sbjct: 260 TARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDP---DLMTMTSVIT 316

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           AC  L     G+QIH ++L      D  + +SL+ +Y   G    A  V +  +  D   
Sbjct: 317 ACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVS 376

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +A+ISGY NC                  +M               +AL  +  M   G+
Sbjct: 377 WTAMISGYENC------------------LM-------------PQKALETYKMMEAEGI 405

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           + D  T+A VLSACS L  L+ G  +H  A + G++   IVA++L+D Y+K         
Sbjct: 406 MPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAK--------- 456

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 C  I+ A  IF +   K+++SW S+I+GL  N    EA
Sbjct: 457 ----------------------CKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEA 494

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L  F  M +  L+ +  +L  V+SACA I +L  G+++ A     G+  D  +  +++D 
Sbjct: 495 LFFFREMIR-RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDM 553

Query: 481 YCKCG 485
           Y +CG
Sbjct: 554 YVRCG 558



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 219/488 (44%), Gaps = 107/488 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  G+++H+H ++ G   S + + N L+ MY++CG+   A L+FD+MP R
Sbjct: 213 VLRTCGGMPNLVRGREIHVHVIRYG-FESDVDVVNALITMYVKCGDVNTARLVFDKMPNR 271

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
           +  SWNAMI G+ + G   + L+LF +M +                              
Sbjct: 272 DRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIH 331

Query: 101 ----KNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
               + +F       N LI  ++  G ++ A T+F+    R+ ++W +MI  Y      +
Sbjct: 332 GYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQ 391

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+  +K + +   E +  D   +A V+ AC+ L  L+ G  +H      GL   S++ +
Sbjct: 392 KALETYKMMEA---EGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVAN 448

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC                              C  ++ A  +F  T + + V 
Sbjct: 449 SLIDMYAKC-----------------------------KC--IDKALEIFHSTLEKNIVS 477

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+I G   NN   EAL  F +M R  +  ++ TL  VLSAC+ +G L  GK++H HA 
Sbjct: 478 WTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHAL 536

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + GV  D  + +A+LD Y +                               CGR+E A  
Sbjct: 537 RTGVSFDGFMPNAILDMYVR-------------------------------CGRMEYAWK 565

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F ++ +  + SWN ++ G ++ G    A +LF  M + ++  ++ +  S++ AC+    
Sbjct: 566 QFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGM 624

Query: 452 LELGEQVF 459
           +  G + F
Sbjct: 625 VAEGLEYF 632



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 110/250 (44%), Gaps = 31/250 (12%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +AL+S +   G + DA  VF R    +   WN ++ GY       EAL L+H+M   GV 
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T   VL  C  +  L  G+++H H  + G   DV V                    
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDV-------------------- 244

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                      +N +IT+Y  CG +  A+ +F  MPN+  ISWN+MI G  +NG  +E L
Sbjct: 245 -----------VNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGL 293

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
            LF  M K  +  D  ++ SVI+AC  +    LG Q+   V       D  I  SL+  Y
Sbjct: 294 RLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMY 353

Query: 482 CKCGFIKMDE 491
              G I+  E
Sbjct: 354 SSVGLIEEAE 363



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 105/244 (43%), Gaps = 38/244 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L +C    ++  GK++H H L+ G+  +  +P  N +L MY+RCG    A   F  +  
Sbjct: 515 VLSACARIGALTCGKEIHAHALRTGVSFDGFMP--NAILDMYVRCGRMEYAWKQFFSVD- 571

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTL 125
               SWN ++ G+ + G    + +LF  M +     N+ ++  ++   +++G +      
Sbjct: 572 HEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEY 631

Query: 126 FNDMPRRNAIAWN-SMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           FN M  + +I  N     C V    R+G   EA    +++       ++ D  +   ++ 
Sbjct: 632 FNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMP------MKPDPAVWGALLN 685

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSS---------LVNLYGKCGDFNSANQVLN 231
           +C          +IH H+ +  L  +++             L NLY   G ++   +V  
Sbjct: 686 SC----------RIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRK 735

Query: 232 MMKE 235
           MM++
Sbjct: 736 MMRQ 739


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 210/448 (46%), Gaps = 68/448 (15%)

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S N+ IS +AK  +L  AR LF+ MP+R  ++WN+MI  Y ++G   EA+ L   ++   
Sbjct: 34  STNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRS- 92

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++      ++V+  CA L  L  GK IH  +L +G +   ++GS+L+  Y  C +  
Sbjct: 93  --HMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIG 150

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +V +++   ++   S ++ GY  C  M+DA  VF +      V W ++ISG+  N +
Sbjct: 151 EARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGD 210

Query: 285 DT-EALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
              +AL +F  M R+G    +  T   V+ AC  LG L  G+ VHG   K G+  D  + 
Sbjct: 211 GCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIG 270

Query: 343 SALLDTYSK-------------------------------RGMPSDACKLFSELKVYDTI 371
            AL++ Y +                                G   DA  +F+ +   + +
Sbjct: 271 GALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPV 330

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSL------------------------------ 401
             N MI  Y+  G+++D+K +F  MP +++                              
Sbjct: 331 SYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEK 390

Query: 402 --ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             ++WNSMI G   +G P EAL L+  M++L ++  + + +++  AC+ + SL  G+ + 
Sbjct: 391 DPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLH 450

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           A +     +S+  + TSL+D Y KCG I
Sbjct: 451 AHLIKTPFESNVYVGTSLIDMYSKCGSI 478



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 129/516 (25%), Positives = 209/516 (40%), Gaps = 129/516 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L  C     +  GK +H   LK G  +  L + + LL  Y  C    +A  +FD +
Sbjct: 101 FSSVLSVCARLRCLRDGKLIHCLVLKSGSESFEL-VGSALLYFYASCFEIGEARRVFDVL 159

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE-LKTARTLF 126
            RRN   W+ M+ G++     + +L +F  MP+++  +W  LISGF+K G+    A  +F
Sbjct: 160 VRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIF 219

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             M R      N                                  F    V+ AC  L 
Sbjct: 220 RLMMRSGETTPNE---------------------------------FTFDCVVRACGRLG 246

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-------------------------- 220
            L  G+ +H  ++  GL++D  +G +LV  Y +C                          
Sbjct: 247 ILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIE 306

Query: 221 -----GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD----RTTDTSSVM 271
                G    A  V N M E +    + +I GYA  G+M+D++R+F+    RT  +S+ M
Sbjct: 307 GLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTM 366

Query: 272 ----------------------------WNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                                       WNSMISGYI + +  EAL L+  M R  + + 
Sbjct: 367 ISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQT 426

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            ST +++  ACS LG L  G+ +H H  K     +V V ++L+D YSK            
Sbjct: 427 QSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSK------------ 474

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CG I +A+  F ++ + ++ +W ++I G + +G   EA+ L
Sbjct: 475 -------------------CGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISL 515

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F  M +  L  +  +   V+SAC+    +  G ++F
Sbjct: 516 FDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIF 551



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 203/471 (43%), Gaps = 111/471 (23%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA-R 151
           ++F+V+ ++N+  W++++ G+     +  A ++F  MPRR+ +AW ++I  + +NG    
Sbjct: 154 RVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCG 213

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ +F+ +          + F    V+ AC  L  L  G+ +H  ++  GL++D  +G 
Sbjct: 214 KALEIFRLMMRS--GETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGG 271

Query: 212 SLVNLYGKC-------------------------------GDFNSANQVLNMMKEPDDFC 240
           +LV  Y +C                               G    A  V N M E +   
Sbjct: 272 ALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVS 331

Query: 241 LSALISGYANCGKMNDARRVFD----RTTDTSSVM------------------------- 271
            + +I GYA  G+M+D++R+F+    RT  +S+ M                         
Sbjct: 332 YNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKD 391

Query: 272 ---WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              WNSMISGYI + +  EAL L+  M R  + +  ST +++  ACS LG L  G+ +H 
Sbjct: 392 PVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHA 451

Query: 329 HACKVGVIDDVIVASALLDTYSK-------------------------------RGMPSD 357
           H  K     +V V ++L+D YSK                                G+ S+
Sbjct: 452 HLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSE 511

Query: 358 ACKLFSELKVYDTILLN--TMITVYSSCGR---IEDAKHIFRTMP-----NKSLISWNSM 407
           A  LF  + +   +  N  T + V S+C R   + +   IF +M        +L  +  +
Sbjct: 512 AISLFDRM-IEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACV 570

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           +  L ++G   EA +    + K+ L  D     +++SAC     LE+GE+V
Sbjct: 571 VDLLGRSGHIREAEEF---IKKMPLEADGVVWGALLSACWFWMDLEVGERV 618



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 69/116 (59%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           + I  N  I+ Y+   +++ A+ +F  MP ++++SWN+MI   S++G   EAL L  +M+
Sbjct: 31  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 90

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  +++ + + +SV+S CA +  L  G+ +   V   G +S +++ ++L+ FY  C
Sbjct: 91  RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASC 146


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 194/393 (49%), Gaps = 73/393 (18%)

Query: 109  LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
            L+S + + G+L  AR LF+ +P  N   W  +     R GF  EA+  F E+     E L
Sbjct: 844  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQK---EGL 900

Query: 169  QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
            + + F+L +++ AC  L+    G+ +H+ IL N  + D+ + S+L+ +Y KCG    A +
Sbjct: 901  RPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACR 960

Query: 229  VLNMMKEPDDFCLSALISGYANCGKMNDA--------------------------RRVFD 262
            V + + + D   ++A++SGYA  G +++A                           +V D
Sbjct: 961  VFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGD 1020

Query: 263  RT-------------TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            ++              +   V W S+ISG++ N  + E    F +M   G    + T++S
Sbjct: 1021 KSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISS 1080

Query: 310  VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
            +L AC+++  L HGK++HG+A  +GV  DV V SAL+D Y+K                  
Sbjct: 1081 LLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAK------------------ 1122

Query: 370  TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                         CG I +AK +F  MP ++ ++WNS+I G + +G   EA++LF  M +
Sbjct: 1123 -------------CGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE 1169

Query: 430  LDLRMDKFSLASVISACANISSLELGEQVFARV 462
             D ++D  +  +V++AC++   +ELGE +F ++
Sbjct: 1170 SDTKLDHLTFTAVLNACSHAGMVELGESLFXKM 1202



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 190/406 (46%), Gaps = 65/406 (16%)

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           EG ++LG +     +  +    ++F    LI  +AK GE+ +A  +++ M   +A   N 
Sbjct: 126 EGCVELGRRWHCF-VVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNC 184

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  Y RNGF  +A ++F ++ +      + + +  +T++  C  ++A++ GKQ+H+H++
Sbjct: 185 LISAYARNGFFVQAFQVFMQIGN---MGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVV 241

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
                 ++ +G++L+ LY K                               CG M +A  
Sbjct: 242 KMQYLSETAVGNALLTLYSK-------------------------------CGMMEEAEI 270

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF+     + + W + I+G+  + +  +AL  F  MR +G+  +  T + VL++C  +  
Sbjct: 271 VFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKD 330

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
              G+  H    K G+   V V +A++D YS  G   +A K F ++              
Sbjct: 331 FIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM-------------- 376

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
               GR              S +SWN++I G   N    +A++ FC M K D+  ++F+ 
Sbjct: 377 ----GRA------------ASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTY 420

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +++  AC++  SL    Q+ +R+    ++S+  +++SL++ Y +CG
Sbjct: 421 SNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCG 466



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/545 (22%), Positives = 222/545 (40%), Gaps = 122/545 (22%)

Query: 1   MDTRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           M TR ++   + +L  C T  +I  GKQLH H +K   L+ T  + N LL +Y +CG   
Sbjct: 208 MGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSET-AVGNALLTLYSKCGMME 266

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG-- 112
           +A ++F+ + +RN  SW A I GF + G  +K+L+ F++M +     N+F+++++++   
Sbjct: 267 EAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCG 326

Query: 113 ---------------------------------FAKAGELKTARTLFNDMPRRNA-IAWN 138
                                            ++  GE+  A   F  M R  + ++WN
Sbjct: 327 CVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWN 386

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           ++I  YV N    +A+  F  +   + E + C+ F  + +  AC+   +L    QIHS +
Sbjct: 387 ALIAGYVLNEKIEKAMEAFCRM---VKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRL 443

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
           + + ++ +  + SSL                               I  Y  CG + +A 
Sbjct: 444 IKSNVESNLHVASSL-------------------------------IEAYTQCGSLENAV 472

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           +VF + +D   V WNS+I  Y  N +  +A+ L  KM   G    + T  +VLSACS  G
Sbjct: 473 QVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSG 532

Query: 319 FLEHGKQVHGH--------------ACKVGVIDDVIVASALLDTYSKRGMPSD------- 357
            ++ G++                  +C V ++         LD   K  M          
Sbjct: 533 LVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPL 592

Query: 358 --ACKLFSELKVY-------------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL- 401
             AC+  S L++              D  +  T+  +Y+  GR  DA++  R M  K + 
Sbjct: 593 LAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEIS 652

Query: 402 ----ISW----NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
                SW    N M    S + +  E   ++  + +L  ++     +   +   +  S +
Sbjct: 653 KEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQDIGYSPPTTTVLHPESRQ 712

Query: 454 LGEQV 458
             EQ+
Sbjct: 713 PKEQL 717



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 185/405 (45%), Gaps = 49/405 (12%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L  +L++C        G+ +H   LK     S   I + L+ MY +CG+   A  +FD +
Sbjct: 907  LPSILKACGHLSDRRTGENMHTVILKNS-FESDAYIISALIYMYSKCGHVEKACRVFDWI 965

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              ++    NAM+ G+ + G   ++L L   M Q     N  SWN LI+GF++ G+     
Sbjct: 966  VDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVS 1025

Query: 124  TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             +F  M       + ++W S+I  +V+N    E    FKE+   L +     +  +++++
Sbjct: 1026 EVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEM---LDQGFCPSSVTISSLL 1082

Query: 180  GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
             AC ++A L +GK+IH + +V G++ D  + S+LV++Y KCG  + A  +  MM E +  
Sbjct: 1083 PACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTV 1142

Query: 240  CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
              ++LI GYAN G  N                               EA+ LF++M  + 
Sbjct: 1143 TWNSLIFGYANHGYCN-------------------------------EAIELFNQMEESD 1171

Query: 300  VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDA 358
               D  T  +VL+ACS  G +E G+ +     +   I+  +   A ++D   + G  S+A
Sbjct: 1172 TKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEA 1231

Query: 359  CKLFSELKVY-DTILLNTMITVYSSCGRIE----DAKHIFRTMPN 398
              L   + V  D  +   ++    + G IE     A+H+F   P 
Sbjct: 1232 YDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPE 1276



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 45/297 (15%)

Query: 242  SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
            + L+S Y  CG++++AR++FD+  +T+   W  +           EAL  F +M++ G+ 
Sbjct: 842  AKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLR 901

Query: 302  EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
             +   L S+L AC  L     G+ +H    K     D  + SAL+  YSK G    AC++
Sbjct: 902  PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 961

Query: 362  FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNG 415
            F  +   D +++N M++ Y+  G + +A  + + M      PN  ++SWN++I G SQ G
Sbjct: 962  FDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPN--VVSWNTLIAGFSQVG 1019

Query: 416  SPIEALDLFCNMNKLDLRMDKFSLASVIS------------------------------- 444
                  ++F  M    +  D  S  SVIS                               
Sbjct: 1020 DKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTIS 1079

Query: 445  ----ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE--YYLM 495
                AC N+++L  G+++     +IG++ D  + ++LVD Y KCG+I   +  +Y+M
Sbjct: 1080 SLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMM 1136



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 115/230 (50%), Gaps = 21/230 (9%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ++ LL +C    ++  GK++H + +  G+    + + + L+ MY +CG  ++A +LF  M
Sbjct: 1078 ISSLLPACTNVANLRHGKEIHGYAMVIGV-EKDVYVRSALVDMYAKCGYISEAKILFYMM 1136

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKTAR 123
            P RN  +WN++I G+   G+  ++++LFN M + +      ++  +++  + AG ++   
Sbjct: 1137 PERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGE 1196

Query: 124  TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +LF  M  +  I      +  M+    R G   EA  L K +       ++ D F+   +
Sbjct: 1197 SLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMP------VEPDKFVWGAL 1250

Query: 179  IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV--NLYGKCGDFNSA 226
            +GAC +   +E  +    H+    L+ +S  GSSL+  NLY   G + +A
Sbjct: 1251 LGACRNHGNIELAEVAAEHLF--ELEPESP-GSSLLLSNLYADAGRWGNA 1297



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 31/183 (16%)

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           S LS C   G +E G++ H    K+G+  D  V ++L+D Y+K                 
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAK----------------- 160

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG ++ A  ++  M +    + N +I   ++NG  ++A  +F  + 
Sbjct: 161 --------------CGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIG 206

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +  R + ++ +++++ C  IS+++ G+Q+ A V  +   S+  +  +L+  Y KCG ++
Sbjct: 207 NMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMME 266

Query: 489 MDE 491
             E
Sbjct: 267 EAE 269


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 233/517 (45%), Gaps = 107/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    SI  G+++       G++   + +  +L+ MY++CG+  +  ++FD++   
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGI-LGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------------- 105
             F WN MI  +   G+  +S+ LF  M      P    FS                   
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LIS +    +++ A+ LF+++  R+ I+WNSMI  YV+NG   
Sbjct: 275 GLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDD 334

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH-ILVNGLDFDSVLG 210
             + +F ++   LV  +  D   +  V  ACA++  L  GK +HS+ I    LD +    
Sbjct: 335 RGIEIFIKM---LVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFN 391

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+++Y KC                               G +N A RVF+R  + + V
Sbjct: 392 NTLLDMYSKC-------------------------------GDLNSAIRVFERMDEKTVV 420

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W SMI+GY+       A+ LF +M+  GV+ D   + S+L+AC+  G L+ GK VH + 
Sbjct: 421 SWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI 480

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +  +  +  V++AL D Y+K G   DA  +FS +K  D I  NTMI             
Sbjct: 481 RENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIG------------ 528

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                              G ++N  P EAL LF  M + + + D  ++A ++ ACA+++
Sbjct: 529 -------------------GYTKNSLPNEALTLFAEMQR-ESKPDGTTVACILPACASLA 568

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +L+ G ++       G   D+ ++ ++VD Y KCG +
Sbjct: 569 ALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLL 605



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 215/480 (44%), Gaps = 109/480 (22%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +  G+Q+H    K G  NS   + N L+  Y        A  LFDE+  R+  SWN+MI 
Sbjct: 267 VEEGRQVHGLICKLG-FNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMIS 325

Query: 81  GFMKLGHKEKSLQLF----------------NV-------------------------MP 99
           G++K G  ++ +++F                NV                         + 
Sbjct: 326 GYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLD 385

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           ++  F+ N L+  ++K G+L +A  +F  M  +  ++W SMI  YVR G +  A++LF E
Sbjct: 386 REVRFN-NTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           + S  V     D + + +++ ACA    L+ GK +H +I  N L+ +S + ++L ++Y  
Sbjct: 445 MKSRGV---VPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMY-- 499

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                        A CG M DA  VF        + WN+MI GY
Sbjct: 500 -----------------------------AKCGSMKDAHDVFSHMKKKDVISWNTMIGGY 530

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             N+   EAL LF +M+R     D +T+A +L AC+SL  L+ G+++HG+A + G  +D 
Sbjct: 531 TKNSLPNEALTLFAEMQRESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDK 589

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V +A++D Y K                               CG +  A+ +F  +PNK
Sbjct: 590 YVTNAVVDMYVK-------------------------------CGLLVLARSLFDMIPNK 618

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            L+SW  MI G   +G   EA++ F  M    +  D+ S  S++ AC++   L+ G ++F
Sbjct: 619 DLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIF 678



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 180/380 (47%), Gaps = 64/380 (16%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  + K G+LK  R +F+ +       WN MI  Y  +G   E++ LFK++   L   +
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQM---LELGI 247

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + +++  ++++   A +A +E G+Q+H  I   G                    FNS N 
Sbjct: 248 KPNSYTFSSILKCFAAVARVEEGRQVHGLICKLG--------------------FNSYNT 287

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V+N           +LIS Y    K+  A+++FD  TD   + WNSMISGY+ N  D   
Sbjct: 288 VVN-----------SLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRG 336

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           + +F KM   GV  D +T+ +V  AC+++G L  GK +H ++ K   +D  +  +     
Sbjct: 337 IEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFN----- 391

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
                                    NT++ +YS CG +  A  +F  M  K+++SW SMI
Sbjct: 392 -------------------------NTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMI 426

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G  + G    A+ LF  M    +  D +++ S+++ACA   +L+ G+ V   +    L+
Sbjct: 427 TGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLE 486

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           ++  +S +L D Y KCG +K
Sbjct: 487 TNSFVSNALTDMYAKCGSMK 506



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 148/336 (44%), Gaps = 78/336 (23%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +  +C    ++ +GK LH + +K   L+  +   N LL MY +CG+   A
Sbjct: 348 VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSA 407

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------- 101
           + +F+ M  +   SW +MI G+++ G  + +++LF+ M  +                   
Sbjct: 408 IRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAIN 467

Query: 102 --------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                               N F  N L   +AK G +K A  +F+ M +++ I+WN+MI
Sbjct: 468 GNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMI 527

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y +N    EA+ LF E+  +     + D   +A ++ ACA LAAL+ G++IH + L N
Sbjct: 528 GGYTKNSLPNEALTLFAEMQRES----KPDGTTVACILPACASLAALDKGREIHGYALRN 583

Query: 202 GLDFDSVLGSSLVNLYGKCG-----------------------------------DFNSA 226
           G   D  + +++V++Y KCG                                     N+ 
Sbjct: 584 GYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTF 643

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           NQ+     EPD+    +++   ++ G +++  ++F+
Sbjct: 644 NQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFN 679



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 71/324 (21%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           +++  CA+  ++  G+++ S I  +G+  D +LG  LV +Y KCGD      V + + E 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
             F                               +WN MIS Y  +    E++ LF +M 
Sbjct: 215 KIF-------------------------------LWNLMISEYSGSGNYGESINLFKQML 243

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
             G+  ++ T +S+L   +++  +E G+QVHG  CK+G                      
Sbjct: 244 ELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLG---------------------- 281

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
                      Y+T+ +N++I+ Y    ++  A+ +F  + ++ +ISWNSMI G  +NG 
Sbjct: 282 --------FNSYNTV-VNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIIST 475
               +++F  M    + +D  ++ +V  ACANI +L LG+ + +  +    LD +   + 
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 476 SLVDFYCKCG--------FIKMDE 491
           +L+D Y KCG        F +MDE
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDE 416



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 31/179 (17%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D     S+L  C+    +  G++V       GV+ D I+   L+  Y K G   +   +F
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            +L      L N MI+ YS                                +G+  E+++
Sbjct: 209 DKLSESKIFLWNLMISEYSG-------------------------------SGNYGESIN 237

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           LF  M +L ++ + ++ +S++   A ++ +E G QV   +  +G +S   +  SL+ FY
Sbjct: 238 LFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFY 296


>gi|302766513|ref|XP_002966677.1| hypothetical protein SELMODRAFT_85284 [Selaginella moellendorffii]
 gi|300166097|gb|EFJ32704.1| hypothetical protein SELMODRAFT_85284 [Selaginella moellendorffii]
          Length = 556

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 212/460 (46%), Gaps = 75/460 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+S     S+   ++LH H ++ G  +    + N L+  Y RC +P ++  +F+ + RR
Sbjct: 45  LLKSYAHKQSLDDARRLHAHMIQTG-FDRLQILGNLLISTYGRCRDPGNSQRVFENLERR 103

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA--RTLFND 128
           N +                               SW  L+S +A+ G L  +    LF+ 
Sbjct: 104 NIY-------------------------------SWISLVSAYAQNGHLPESWRAELFDA 132

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           MP R   +WNSMI  Y +NG +RE   LF  +    +E ++ D      VI A  +L  L
Sbjct: 133 MPDRETASWNSMIVGYAKNGHSREGFHLFLAMT---LEGVEPDRITFLGVIDASGNLGNL 189

Query: 189 EYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           +  + IH  IL++G    D  +G+++V +YG+C   + A +  + M   +    ++L   
Sbjct: 190 KLARMIHEEILLSGEFQHDVFVGTAIVGMYGRCRSPDDAQRSFDSMSVKNSVSWTSLAVA 249

Query: 248 YANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           Y   G +  A  VF++T D ++V+ W +MI  Y+ NN++ EAL LF KM   G   D   
Sbjct: 250 YGQNGCLERALSVFEQTPDKTNVVSWTAMIVAYVENNDEREALDLFKKMDVEGTSPDVVI 309

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           L +VL AC+++  L  G+ +H  A + G +    VA+ L+D Y K               
Sbjct: 310 LTAVLDACANISGLSQGRAIH-RALEDGSVPLTEVATGLIDMYGK--------------- 353

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLISWNSMIVGLSQNGSPIEALD 422
                           CG + DAK +F  +  +      + W SM+   +QNG  +EA++
Sbjct: 354 ----------------CGSVVDAKLVFNALEEQLGAEMTLPWTSMVTAFAQNGHGLEAVE 397

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           LF +M    +  ++ SL SV+ AC++   +  G   F+ +
Sbjct: 398 LFRSMELHGVEANEISLVSVLCACSHSGLITEGLSYFSSI 437



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 164/329 (49%), Gaps = 6/329 (1%)

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           D  + L+C   I   ++ + A   +L+  +++H+H++  G D   +LG+ L++ YG+C D
Sbjct: 31  DPSQPLKCQE-IYTALLKSYAHKQSLDDARRLHAHMIQTGFDRLQILGNLLISTYGRCRD 89

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR--VFDRTTDTSSVMWNSMISGYI 280
             ++ +V   ++  + +   +L+S YA  G + ++ R  +FD   D  +  WNSMI GY 
Sbjct: 90  PGNSQRVFENLERRNIYSWISLVSAYAQNGHLPESWRAELFDAMPDRETASWNSMIVGYA 149

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DV 339
            N    E   LF  M   GV  D  T   V+ A  +LG L+  + +H      G    DV
Sbjct: 150 KNGHSREGFHLFLAMTLEGVEPDRITFLGVIDASGNLGNLKLARMIHEEILLSGEFQHDV 209

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V +A++  Y +   P DA + F  + V +++   ++   Y   G +E A  +F   P+K
Sbjct: 210 FVGTAIVGMYGRCRSPDDAQRSFDSMSVKNSVSWTSLAVAYGQNGCLERALSVFEQTPDK 269

Query: 400 S-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           + ++SW +MIV   +N    EALDLF  M+      D   L +V+ ACANIS L  G  +
Sbjct: 270 TNVVSWTAMIVAYVENNDEREALDLFKKMDVEGTSPDVVILTAVLDACANISGLSQGRAI 329

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             R    G      ++T L+D Y KCG +
Sbjct: 330 H-RALEDGSVPLTEVATGLIDMYGKCGSV 357



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 136/321 (42%), Gaps = 64/321 (19%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           RI +L  +  S N  + + + + +H   L  G     + +   ++ MY RC +P DA   
Sbjct: 173 RITFLGVIDASGNLGN-LKLARMIHEEILLSGEFQHDVFVGTAIVGMYGRCRSPDDAQRS 231

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-NDFSWNMLISGFAKAGELKTA 122
           FD M  +N  SW ++   + + G  E++L +F   P K N  SW                
Sbjct: 232 FDSMSVKNSVSWTSLAVAYGQNGCLERALSVFEQTPDKTNVVSW---------------- 275

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
                           +MI  YV N   REA+ LFK+++   VE    D  IL  V+ AC
Sbjct: 276 ---------------TAMIVAYVENNDEREALDLFKKMD---VEGTSPDVVILTAVLDAC 317

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A+++ L  G+ IH  +    +    V  + L+++YGKCG    A  V N ++E     L 
Sbjct: 318 ANISGLSQGRAIHRALEDGSVPLTEV-ATGLIDMYGKCGSVVDAKLVFNALEEQ----LG 372

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           A +                       ++ W SM++ +  N    EA+ LF  M  +GV  
Sbjct: 373 AEM-----------------------TLPWTSMVTAFAQNGHGLEAVELFRSMELHGVEA 409

Query: 303 DASTLASVLSACSSLGFLEHG 323
           +  +L SVL ACS  G +  G
Sbjct: 410 NEISLVSVLCACSHSGLITEG 430


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 189/384 (49%), Gaps = 67/384 (17%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +++ + + GE   AR +F+++  ++ ++WNS++  Y + GFAREAV +F  L  +   
Sbjct: 156 NSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREE--S 213

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + D   L +V+GAC +L  LE G+ +   ++  G+  +S +GS               
Sbjct: 214 GFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGS--------------- 258

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                           ALIS Y+ CG++  +RR+FD       + WN+ IS Y  N    
Sbjct: 259 ----------------ALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMAD 302

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EA+ LFH M+ NGV  +  TL +VLSAC+S+G L+ GKQ+  +A   G+  D+ VA+AL+
Sbjct: 303 EAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALI 362

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y+K                               CG +E A+ +F  MP K+  SWN+
Sbjct: 363 DMYAK-------------------------------CGSLESAQRVFNDMPRKNDASWNA 391

Query: 407 MIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFARV-T 463
           MI  L+ +G   EAL LF  M+      R +  +  S++SAC +   ++ G ++F  + T
Sbjct: 392 MISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMST 451

Query: 464 IIGLDSDQIISTSLVDFYCKCGFI 487
           + GL       + +VD   + G +
Sbjct: 452 LFGLVPKIEHYSCMVDLLSRAGHL 475



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 178/399 (44%), Gaps = 96/399 (24%)

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           +L   ++ P  ND+++N++         L+   T ++D P          +H Y +    
Sbjct: 69  TLIFSHITPHPNDYAFNIM---------LRATTTTWHDYPL--------TLHLYHQ---- 107

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
                  K LN      +  + F    V  ACA+L  +   +  H  +   GLD D    
Sbjct: 108 ------MKTLN------ISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTV 155

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +S+V +Y +                               CG+   AR+VFD  T+   V
Sbjct: 156 NSMVTMYFR-------------------------------CGENGVARKVFDEITEKDLV 184

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
            WNS++SGY       EA+ +F ++R  +G   D  +L SVL AC  LG LE G+ V G 
Sbjct: 185 SWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGF 244

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  +  + SAL                               I++YS CG +  +
Sbjct: 245 VVERGMKVNSYIGSAL-------------------------------ISMYSKCGELVSS 273

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + IF  MP++  I+WN+ I   +QNG   EA+ LF +M +  +  +K +L +V+SACA+I
Sbjct: 274 RRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASI 333

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +L+LG+Q+    T  GL  D  ++T+L+D Y KCG ++
Sbjct: 334 GALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLE 372


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 143/530 (26%), Positives = 240/530 (45%), Gaps = 108/530 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D     LA  L  C     +  G QLH   +K G L   + +AN L+ MY +C    +A 
Sbjct: 245 DPNFATLACFLSVCAAEADLLSGVQLHTLAVKYG-LEPEVAVANTLVSMYAKCQCLEEAW 303

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP---QKN 102
            LF  MPR +  +WN MI G ++ G  + +L+LF                +++P   + N
Sbjct: 304 RLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELN 363

Query: 103 DFSWNMLISGFA--------------------KAGELKTARTLFNDMPRRNAIAWNSMIH 142
            F     I G+                     K  +++ A+ +F+     + +  ++MI 
Sbjct: 364 GFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMIS 423

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            YV N  +  AV++F+ L   L   ++ +A ++A+ + ACA +AA+  G+++H ++L N 
Sbjct: 424 GYVLNRMSEAAVKMFRYL---LALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNA 480

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
            +             G+C                  +  SAL+  Y+ CG+++ +  +F 
Sbjct: 481 YE-------------GRC------------------YVESALMDMYSKCGRLDLSHYMFS 509

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           + +    V WNSMIS +  N E  EAL LF +M   GV  +  T++S+LSAC+ L  + +
Sbjct: 510 KMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYY 569

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++HG   K  +  D+   SAL+D Y K                               
Sbjct: 570 GKEIHGIIIKGPIRADLFAESALIDMYGK------------------------------- 598

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG +E A  +F  MP K+ +SWNS+I     +G   E++DL C M +   + D  +  ++
Sbjct: 599 CGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLAL 658

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGFIKMDE 491
           ISACA+   ++ G ++F  +T       Q+   S +VD Y + G  K+D+
Sbjct: 659 ISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAG--KLDK 706



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 233/521 (44%), Gaps = 105/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +++SC    ++H+G+ +H      G L+  + + + L++MY   G    A  +FD M
Sbjct: 150 LPYVVKSCAALGALHLGRLVHRTTRALG-LDRDMYVGSALIKMYADAGLLDGAREVFDGM 208

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSW------------------ 106
             R+C  WN M++G++K G    ++ LF VM       +F+                   
Sbjct: 209 DERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGV 268

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+S +AK   L+ A  LF  MPR + + WN MI   V+NG
Sbjct: 269 QLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNG 328

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+RLF ++       LQ D+  LA+++ A  +L   + GK+IH +I+ N    D  
Sbjct: 329 LVDDALRLFCDMQK---SGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVF 385

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L S+LV++Y KC D   A  V +  K  D                               
Sbjct: 386 LVSALVDIYFKCRDVRMAQNVFDATKSID------------------------------- 414

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+ ++MISGY+ N     A+ +F  +   G+  +A  +AS L AC+S+  +  G+++HG
Sbjct: 415 VVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHG 474

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +  K        V SAL+D YSK G    +  +FS++   D +  N+MI+ ++  G  E 
Sbjct: 475 YVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPE- 533

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                         EALDLF  M    ++ +  +++S++SACA 
Sbjct: 534 ------------------------------EALDLFRQMIMEGVKYNNVTISSILSACAG 563

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           + ++  G+++   +    + +D    ++L+D Y KCG +++
Sbjct: 564 LPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLEL 604



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/535 (23%), Positives = 222/535 (41%), Gaps = 117/535 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP----IANRLLQMYMRCGNPTDALLL 63
           L  LL+ C     + +G ++H   +  G+L++  P    +  RL+ MY+      DA+ +
Sbjct: 39  LLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAV 98

Query: 64  FDEMPRRNC---FSWNAMIEGFMKLGHKEKSLQLF--------------NVMP------- 99
           F  +PR        WN +I GF   GH   ++  +              + +P       
Sbjct: 99  FSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA 158

Query: 100 --------------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                                ++ +  + LI  +A AG L  AR +F+ M  R+ + WN 
Sbjct: 159 ALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNV 218

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDA--FILATVIGACADLAALEYGKQIHSH 197
           M+  YV+ G    AV LF+ + +       CD     LA  +  CA  A L  G Q+H+ 
Sbjct: 219 MMDGYVKAGDVASAVGLFRVMRAS-----GCDPNFATLACFLSVCAAEADLLSGVQLHTL 273

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
            +  GL                               EP+    + L+S YA C  + +A
Sbjct: 274 AVKYGL-------------------------------EPEVAVANTLVSMYAKCQCLEEA 302

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
            R+F        V WN MISG + N    +AL LF  M+++G+  D+ TLAS+L A + L
Sbjct: 303 WRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTEL 362

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
              + GK++HG+  +     DV + SAL+D Y K                          
Sbjct: 363 NGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFK-------------------------- 396

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                C  +  A+++F    +  ++  ++MI G   N     A+ +F  +  L ++ +  
Sbjct: 397 -----CRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAV 451

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            +AS + ACA+++++ +G+++   V     +    + ++L+D Y KCG + +  Y
Sbjct: 452 MVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHY 506


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 191/376 (50%), Gaps = 35/376 (9%)

Query: 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           +K+G+L  A  +F+ +P  +A  +N++   Y+R   AR  + ++  +   L + +  + F
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRM---LHKSVSPNKF 121

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
               +I AC    A+E GKQIH+H+L  G   D    ++L+++Y        A +V + M
Sbjct: 122 TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 181

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            + D    ++LI+GY+  G ++ AR VF+   + +SV WN+MI+ Y+ +N   EA  LF 
Sbjct: 182 PQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFD 241

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +MR   V+ D    AS+LSAC+ LG LE GK +HG+  K G+  D  +A+ ++D Y K  
Sbjct: 242 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCK-- 299

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        CG +E A  +F  +P K + SWN MI GL+ 
Sbjct: 300 -----------------------------CGCLEKASEVFNELPQKGISSWNCMIGGLAM 330

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQI 472
           +G    A++LF  M +  +  D  +  +V+SACA+   +E G+  F  +T ++GL     
Sbjct: 331 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 390

Query: 473 ISTSLVDFYCKCGFIK 488
               +VD   + G ++
Sbjct: 391 HFGCMVDLLGRAGLLE 406



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 177/388 (45%), Gaps = 68/388 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C   ++I  GKQ+H H LK G       + N L+ MY+   +   A  +FD MP+R
Sbjct: 126 LIRACCIDYAIEEGKQIHAHVLKFGFGADGFSL-NNLIHMYVNFQSLEQARRVFDNMPQR 184

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SW ++I G+ + G  +K+ ++F +MP++N  SWN +I+ + ++  L  A  LF+ M 
Sbjct: 185 DVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMR 244

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             N +                                   D F+ A+++ AC  L ALE 
Sbjct: 245 LENVV----------------------------------LDKFVAASMLSACTGLGALEQ 270

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH +I  +G++ DS L ++++++Y KCG    A++V N + +               
Sbjct: 271 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ--------------- 315

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                            SS  WN MI G   + +   A+ LF +M R  V  D  T  +V
Sbjct: 316 --------------KGISS--WNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359

Query: 311 LSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-Y 368
           LSAC+  G +E GK    +  +V G+   +     ++D   + G+  +A KL +E+ V  
Sbjct: 360 LSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNP 419

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTM 396
           D  +L  ++      G  E  + I + +
Sbjct: 420 DAGVLGALVGACRIHGNTELGEQIGKKV 447



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 140/305 (45%), Gaps = 32/305 (10%)

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           +C+ +A L   KQ HS I+  GL  D+                       + M     FC
Sbjct: 29  SCSTMAEL---KQYHSQIIRLGLSADN-----------------------DAMGRVIKFC 62

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                   +  G +N A  VFD+     + ++N++  GY+        + ++ +M    V
Sbjct: 63  ------AISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSV 116

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             +  T   ++ AC     +E GKQ+H H  K G   D    + L+  Y        A +
Sbjct: 117 SPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARR 176

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F  +   D +   ++IT YS  G ++ A+ +F  MP ++ +SWN+MI    Q+    EA
Sbjct: 177 VFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEA 236

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
             LF  M   ++ +DKF  AS++SAC  + +LE G+ +   +   G++ D  ++T+++D 
Sbjct: 237 FALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDM 296

Query: 481 YCKCG 485
           YCKCG
Sbjct: 297 YCKCG 301



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 19/237 (8%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           A +L +C    ++  GK +H +  K GI L+S L  A  ++ MY +CG    A  +F+E+
Sbjct: 256 ASMLSACTGLGALEQGKWIHGYIEKSGIELDSKL--ATTVIDMYCKCGCLEKASEVFNEL 313

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P++   SWN MI G    G  E +++LF  M ++    +  ++  ++S  A +G ++  +
Sbjct: 314 PQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGK 373

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     +      +  M+    R G   EA +L  E+       +  DA +L  +
Sbjct: 374 HYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMP------VNPDAGVLGAL 427

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      E G+QI   + +     +S     L NLY   G +    +V  +M +
Sbjct: 428 VGACRIHGNTELGEQIGKKV-IELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMND 483


>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g19720; AltName: Full=Protein DYW7
 gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
 gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 894

 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 239/482 (49%), Gaps = 36/482 (7%)

Query: 6   DYL-ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           D+L  ++LQ C     +  GK +H   +K G ++S L ++N +L +Y +CG    A   F
Sbjct: 181 DFLFPKILQGCANCGDVEAGKVIHSVVIKLG-MSSCLRVSNSILAVYAKCGELDFATKFF 239

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELK 120
             M  R+  +WN+++  + + G  E++++L   M ++       +WN+LI G+ + G+  
Sbjct: 240 RRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCD 299

Query: 121 TARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            A  L   M       +   W +MI   + NG   +A+ +F+++    +  +  +A  + 
Sbjct: 300 AAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKM---FLAGVVPNAVTIM 356

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           + + AC+ L  +  G ++HS  +  G   D ++G+SLV++Y KCG    A +V + +K  
Sbjct: 357 SAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNK 416

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 292
           D +  +++I+GY   G    A  +F R  D +     + WN+MISGYI N ++ EA+ LF
Sbjct: 417 DVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLF 476

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG------------HACKVGVIDDVI 340
            +M ++G ++  +   +++ A    G++++GK+                   V ++  + 
Sbjct: 477 QRMEKDGKVQRNTATWNLIIA----GYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLP 532

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
             + LL     R +    C L   L     +  N +   Y+  G IE ++ IF  M  K 
Sbjct: 533 ACANLLGAKMVREI--HGCVLRRNLDAIHAVK-NALTDTYAKSGDIEYSRTIFLGMETKD 589

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           +I+WNS+I G   +GS   AL LF  M    +  ++ +L+S+I A   + +++ G++VF 
Sbjct: 590 IITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFY 649

Query: 461 RV 462
            +
Sbjct: 650 SI 651



 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 144/475 (30%), Positives = 216/475 (45%), Gaps = 86/475 (18%)

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F +  + + F    L+S +AK G +  AR +F+ M  RN   W++MI  Y R    RE  
Sbjct: 107 FGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVA 166

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           +LF+ +  D V     D F+   ++  CA+   +E GK IHS ++  G+     + +S++
Sbjct: 167 KLFRLMMKDGV---LPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSIL 223

Query: 215 NLYGKCGDFNSANQVLNMMKEPD---------DFCLSA---------------------- 243
            +Y KCG+ + A +    M+E D          +C +                       
Sbjct: 224 AVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLV 283

Query: 244 ----LISGYANCGKMNDAR------RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
               LI GY   GK + A         F  T D  +  W +MISG I N    +AL +F 
Sbjct: 284 TWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFT--WTAMISGLIHNGMRYQALDMFR 341

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           KM   GV+ +A T+ S +SACS L  +  G +VH  A K+G IDDV+V ++L+D YSK G
Sbjct: 342 KMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCG 401

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIV 409
              DA K+F  +K  D    N+MIT Y   G    A  +F  M + +L    I+WN+MI 
Sbjct: 402 KLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMIS 461

Query: 410 GLSQNGSPIEALDLFCNMNK---------------------------LDL-RMDKFS--- 438
           G  +NG   EA+DLF  M K                           L+L R  +FS   
Sbjct: 462 GYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFM 521

Query: 439 -----LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
                + S++ ACAN+   ++  ++   V    LD+   +  +L D Y K G I+
Sbjct: 522 PNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIE 576



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 186/391 (47%), Gaps = 46/391 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + +C+    I+ G ++H   +K G ++  L + N L+ MY +CG   DA  +FD +  ++
Sbjct: 359 VSACSCLKVINQGSEVHSIAVKMGFIDDVL-VGNSLVDMYSKCGKLEDARKVFDSVKNKD 417

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
            ++WN+MI G+ + G+  K+ +LF  M     + N  +WN +ISG+ K G+   A  LF 
Sbjct: 418 VYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQ 477

Query: 128 DMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +     RN   WN +I  Y++NG   EA+ LF+++      R   ++  + +++ AC
Sbjct: 478 RMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQ---FSRFMPNSVTILSLLPAC 534

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A+L   +  ++IH  +L   LD    + ++L + Y K GD   +                
Sbjct: 535 ANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYS---------------- 578

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                          R +F        + WNS+I GY+ +     AL LF++M+  G+  
Sbjct: 579 ---------------RTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITP 623

Query: 303 DASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
           +  TL+S++ A   +G ++ GK+V +  A    +I  +   SA++  Y +     +A + 
Sbjct: 624 NRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQF 683

Query: 362 FSELKVY-DTILLNTMITVYSSCGRIEDAKH 391
             E+ +  +T +  + +T     G I+ A H
Sbjct: 684 IQEMNIQSETPIWESFLTGCRIHGDIDMAIH 714


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 211/455 (46%), Gaps = 95/455 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H   LK G       +   L+ MY R G   DA  +FD    R
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVLKLGC-GLDRYVHTSLISMYARNGGLEDARKVFDASSHR 128

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S  A                               LI+G+A  G+ ++AR +F+++ 
Sbjct: 129 DVVSCTA-------------------------------LITGYASRGDFRSARKVFDEIT 157

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++WN+MI  YV NG   EA+ LFKE+   +   ++ D   L +V+ ACA   ++E 
Sbjct: 158 ERDVVSWNAMITGYVENGRYEEALELFKEM---MRTNVRPDEGTLVSVVSACAQSGSIEL 214

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS +                + +G    F+S+ +++N           ALI  Y+ 
Sbjct: 215 GRQVHSWV------------DDDDDDHG----FSSSLKIVN-----------ALIDLYSK 247

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG +  A  +F+  +    V WN++I GY   N   EALLLF +M R+G   +  TL SV
Sbjct: 248 CGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSV 307

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG ++ G+ +H +  K   GV ++  + ++L+D Y+K                 
Sbjct: 308 LPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAK----------------- 350

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A  +F +M  +SL SWN+MI G + +G    A DLF  M 
Sbjct: 351 --------------CGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMR 396

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
              +  D  +   ++SAC++   L+LG Q+F  +T
Sbjct: 397 GNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMT 431



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 190/372 (51%), Gaps = 32/372 (8%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M+  +  +     A+ ++  + S  +  L  +++    +
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVS--LGHLP-NSYSFPFL 70

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   A E G+QIH+ +L  G   D  + +SL+++Y + G    A +V +     D 
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G    AR+VFD  T+   V WN+MI+GY+ N    EAL LF +M R 
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D  TL SV+SAC+  G +E G+QVH               S + D     G  S  
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVH---------------SWVDDDDDDHGFSSS- 234

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                 LK+     +N +I +YS CG +E A  +F  +  K ++SWN++I G +      
Sbjct: 235 ------LKI-----VNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYK 283

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
           EAL LF  M +     +  +L SV+ ACA++ ++++G    V+    + G+ ++  + TS
Sbjct: 284 EALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTS 343

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 344 LIDMYAKCGDIE 355


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 187/367 (50%), Gaps = 48/367 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+++C        G+ +H H  K G  +S + +   L++ Y   G+   +  +FD+M
Sbjct: 79  FSSLIKACTLLVDSAFGEAVHGHVWKHG-FDSHVFVQTTLIEFYSTFGDVGGSRRVFDDM 137

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+ F+W  MI   ++ G    + +LF+ MP+KN  +WN +I G+ K G  ++A  LFN
Sbjct: 138 PERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFN 197

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQCDAFILATVIGACADLA 186
            MP R+ I+W +M++CY RN   +E + LF     D++++ +  D   + TVI ACA L 
Sbjct: 198 QMPARDIISWTTMMNCYSRNKRYKEVIALFH----DVIDKGMIPDEVTMTTVISACAHLG 253

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL  GK++H ++++ G D D  +GSSL+++Y KCG  + A  V   ++  + FC + +I 
Sbjct: 254 ALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIID 313

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           G A                            GY+      EAL +F +M R  +  +A T
Sbjct: 314 GLAT--------------------------HGYVE-----EALRMFGEMERKRIRPNAVT 342

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS------ALLDTYSKRGMPSDACK 360
             S+L+AC+  GF+E G++       + ++ D  +A        ++D  SK G+  DA +
Sbjct: 343 FISILTACTHAGFIEEGRRWF-----MSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALE 397

Query: 361 LFSELKV 367
           +   + V
Sbjct: 398 MIRNMTV 404



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 170/387 (43%), Gaps = 65/387 (16%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N  IS  +    +  A + F ++   N + +N++I   V   ++ +A+  +  +   
Sbjct: 11  FLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHM--- 67

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L   +   ++  +++I AC  L    +G+ +H H+  +G D    + ++L+  Y   GD 
Sbjct: 68  LRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDV 127

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY--IS 281
             + +V + M E D F  + +IS +   G M  A R+FD   + +   WN+MI GY  + 
Sbjct: 128 GGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLG 187

Query: 282 NNEDTEALL-----------------------------LFHKMRRNGVLEDASTLASVLS 312
           N E  E L                              LFH +   G++ D  T+ +V+S
Sbjct: 188 NAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVIS 247

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+ LG L  GK+VH +    G   DV + S+L+D                         
Sbjct: 248 ACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLID------------------------- 282

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                 +Y+ CG I+ A  +F  +  K+L  WN +I GL+ +G   EAL +F  M +  +
Sbjct: 283 ------MYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRI 336

Query: 433 RMDKFSLASVISACANISSLELGEQVF 459
           R +  +  S+++AC +   +E G + F
Sbjct: 337 RPNAVTFISILTACTHAGFIEEGRRWF 363



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 31/284 (10%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D F ++  IS  +N   +N A   F    + + +++N++I G +      +AL+ +  M 
Sbjct: 9   DCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHML 68

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG--- 353
           RN V+  + + +S++ AC+ L     G+ VHGH  K G    V V + L++ YS  G   
Sbjct: 69  RNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVG 128

Query: 354 --------MP--------------------SDACKLFSELKVYDTILLNTMITVYSSCGR 385
                   MP                    + A +LF E+   +    N MI  Y   G 
Sbjct: 129 GSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGN 188

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            E A+ +F  MP + +ISW +M+   S+N    E + LF ++    +  D+ ++ +VISA
Sbjct: 189 AESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISA 248

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           CA++ +L LG++V   + + G D D  I +SL+D Y KCG I M
Sbjct: 249 CAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDM 292



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 117/241 (48%), Gaps = 25/241 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C    ++ +GK++HL+ + +G  +  + I + L+ MY +CG+   ALL+F ++
Sbjct: 242 MTTVISACAHLGALALGKEVHLYLVLQG-FDLDVYIGSSLIDMYAKCGSIDMALLVFYKL 300

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             +N F WN +I+G    G+ E++L++F  M +K    N  ++  +++    AG ++  R
Sbjct: 301 QTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGR 360

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M +   IA     +  M+    + G   +A+ + + +       ++ ++FI   +
Sbjct: 361 RWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMT------VEPNSFIWGAL 414

Query: 179 IGACADLAALEYGKQIHSHILVNGL----DFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +  C     LE      +HI V  L      +S   S LVN+Y +   +N   ++   MK
Sbjct: 415 LNGCKLHKNLEI-----AHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMK 469

Query: 235 E 235
           +
Sbjct: 470 D 470


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 186/365 (50%), Gaps = 37/365 (10%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           AR +F+ + +RNA +W+ ++ CYV+N   +EA+ ++KE+   + E +  DA+ L++V+ A
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEM---VREEISIDAYTLSSVLAA 57

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-FC 240
           C  L  +E G+ +       G + D V+ +SL++L+ KCG    A  V   M    D   
Sbjct: 58  CTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIIS 117

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           ++A+I  Y  CG + D++ +F        V WN+MI+ Y     D +A  LFH+M   G 
Sbjct: 118 VTAMIGAY--CGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGH 175

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T +S+L AC+S   LE G+ +H           V + +   D             
Sbjct: 176 TPDIYTFSSILGACASPKRLEDGRMLH-----------VRITARGFDR------------ 212

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                   D  + N +I++Y+ CG +E A+  F ++  K L +WN+M+   +Q     +A
Sbjct: 213 --------DFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDA 264

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L L+ NM       D+F+ +SV+ +CA++ +L  G+ +    T  G + D I+ T+LV+ 
Sbjct: 265 LFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNM 324

Query: 481 YCKCG 485
           Y KCG
Sbjct: 325 YAKCG 329



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 187/421 (44%), Gaps = 69/421 (16%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDF-SWNMLISGFAKAGELKTARTLFNDMPRRNA 134
            ++I  F K G  E++  +F  M    D  S   +I  +   G LK +++LF  M  ++ 
Sbjct: 87  TSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYC--GSLKDSKSLFLTMDVKDV 144

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           ++WN+MI  Y   G  ++A  LF  +          D +  ++++GACA    LE G+ +
Sbjct: 145 VSWNAMIAAYTLYGHDKDAFSLFHRM---CTLGHTPDIYTFSSILGACASPKRLEDGRML 201

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H  I   G D D  + ++L+++Y +                               CG +
Sbjct: 202 HVRITARGFDRDFAMQNNLISMYTR-------------------------------CGSL 230

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
             ARR F          WN+M++ Y   ++  +AL L+  M   G   D  T +SV+ +C
Sbjct: 231 ESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSC 290

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           +SLG L  GK +H  +   G   DVI+ +AL                             
Sbjct: 291 ASLGALREGKFIHECSTSCGFEKDVILGTAL----------------------------- 321

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
             + +Y+ CG + DAK  F  + NK ++SW++MI   +Q+G   EAL+L   MN   +  
Sbjct: 322 --VNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQ 379

Query: 435 DKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           ++ + +SV+ AC++   L  G   F  ++   G++ D+  +   +D   + G++K  E+ 
Sbjct: 380 NEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHV 439

Query: 494 L 494
           L
Sbjct: 440 L 440



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 3/239 (1%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           AR+VFDR    ++  W+ ++  Y+ N    EAL ++ +M R  +  DA TL+SVL+AC+ 
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNT 375
           L  +E G+ V   A ++G   DV+VA++L+  ++K G   +A  +F  +  + D I +  
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           MI  Y  CG ++D+K +F TM  K ++SWN+MI   +  G   +A  LF  M  L    D
Sbjct: 121 MIGAY--CGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPD 178

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            ++ +S++ ACA+   LE G  +  R+T  G D D  +  +L+  Y +CG ++    Y 
Sbjct: 179 IYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYF 237



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 134/342 (39%), Gaps = 58/342 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +   +  G+ LH+    +G  +    + N L+ MY RCG+   A   F  +
Sbjct: 182 FSSILGACASPKRLEDGRMLHVRITARG-FDRDFAMQNNLISMYTRCGSLESARRYFYSI 240

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS---------------- 105
            ++   +WN M+  + +    + +L L+  M      P +  FS                
Sbjct: 241 EKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGK 300

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                               L++ +AK G L  A+  F+ +  ++ ++W++MI    ++G
Sbjct: 301 FIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHG 360

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
            A EA+ L   +N   + + +  A   ++V+ AC+    L  G      +  + G++ D 
Sbjct: 361 HAEEALELSHLMNLQGIAQNEVTA---SSVLHACSHGGRLYEGIDYFMGLSQDFGIERDE 417

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR-------- 259
                 ++L G+ G    A  VL+ M  P      AL++    C    D RR        
Sbjct: 418 ENTVGFIDLLGRAGWLKEAEHVLHTM--PFKVSFVALVTLLGGCKVHGDVRRGKAFTKRI 475

Query: 260 -VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
              +     S V+ N+M   Y +     +   L   MR+ GV
Sbjct: 476 VALEPENPGSYVLLNNM---YAAAGRWDDVAKLRRYMRKKGV 514


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 220/474 (46%), Gaps = 104/474 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G  +  L +   L+ MY++ G   DA  +FD+   R
Sbjct: 109 LLKSCAKSKAFREGQQIHGHVLKLG-YDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A                               LI+G+A  G + +A+ +F+++P
Sbjct: 168 DVVSYTA-------------------------------LITGYASKGYIASAQKMFDEIP 196

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+MI  Y   G  +EA+ LFKE+   +   ++ D   + +V+ ACA  A++E 
Sbjct: 197 IKDVVSWNAMISGYAETGNNKEALELFKEM---MKTNVRPDESTMVSVVSACAQSASIEL 253

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G                    F S  +++N           ALI  Y  
Sbjct: 254 GRQVHSWIDDHG--------------------FGSNLKIVN-----------ALIDLYIK 282

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG++  A  +F+  +    + WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 283 CGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 342

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG +E G+ +H +  K   GV +     ++L+D Y+K                 
Sbjct: 343 LPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAK----------------- 385

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A+ +F ++ N+SL SWN+MI G + +G    A D+F  M 
Sbjct: 386 --------------CGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 431

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           K ++  D  +   ++SAC++   L+LG  +F       +  D  I+  L  + C
Sbjct: 432 KNEIEPDDITFVGLLSACSHSGMLDLGRHIFR-----SMKEDYKITPKLEHYGC 480



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 177/372 (47%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  +     A+ L+  + S     L  + +    +
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMIS---LGLLPNCYTFPFL 109

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   A   G+QIH H+L  G D D  + +SL+++Y + G    A +V +     D 
Sbjct: 110 LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 169

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G +  A+++FD       V WN+MISGY     + EAL LF +M + 
Sbjct: 170 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 229

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ SV+SAC+    +E G+QVH      G   ++ + +AL+D Y K G    A
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I  NT+I  Y+     ++A  +F+ M              L    SP 
Sbjct: 290 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM--------------LRSGESP- 334

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
                           +  ++ S++ ACA++ ++E+G    V+    + G+ +     TS
Sbjct: 335 ----------------NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS 378

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 379 LIDMYAKCGDIE 390


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 236/509 (46%), Gaps = 85/509 (16%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           H+ K +H   LK+   ++ L  +N L+  Y++      AL LF  +P  N  S+  +I  
Sbjct: 81  HLAKTVHATLLKRDEEDTHL--SNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLIS- 137

Query: 82  FMKLGHKEKSLQLFNVMPQK-----NDFSW------------------------------ 106
           F+    +  +L LF  M  +     N++++                              
Sbjct: 138 FLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHF 197

Query: 107 ------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                 N L+S +AK      A  LFN +PRR+  +WN++I   +++     A RLF+ +
Sbjct: 198 DSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNM 257

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
            +   +  + D F L+ ++ A A L     G+Q+H+H +  GL+ D  +G+ L+  Y K 
Sbjct: 258 QA--TDAFRVDDFTLSILLTASASLME---GQQVHAHAVKLGLETDLNVGNGLIGFYSKF 312

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G+ +    +   M+  D    + +++ Y   G +N A +VFD   + +SV +N++++G+ 
Sbjct: 313 GNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFC 372

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            N +  EA+ LF +M   G+     +L SV+ AC  LG  +  KQVHG A K G   +  
Sbjct: 373 RNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGY 432

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF--RTMPN 398
           V +ALLD Y++                               CGR+ DA  +F    +  
Sbjct: 433 VEAALLDMYTR-------------------------------CGRMVDAGKMFLRWELEE 461

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR--MDKFSLASVISACANISSLELGE 456
            S + W +MI G ++NG P EA+ LF ++ + D +  MD+ + AS++  C  I  L++G+
Sbjct: 462 FSSVVWTAMICGYARNGQPEEAIYLF-HVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGK 520

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           Q+   V   GL  +  +  ++V  Y KCG
Sbjct: 521 QIHCHVIKCGLGFNLEVGNAVVSMYFKCG 549



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 196/417 (47%), Gaps = 54/417 (12%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           Y+A L    +  H  H G QLH   LK    +S   +AN L+ +Y +  +   AL LF++
Sbjct: 167 YVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPF-VANALVSLYAKHASFHAALKLFNQ 225

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISG--------- 112
           +PRR+  SWN +I   ++    + + +LF  M      + +DF+ ++L++          
Sbjct: 226 IPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASASLMEGQQ 285

Query: 113 -----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                  ++K G +     LF  M  R+ I W  M+  Y+  G 
Sbjct: 286 VHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGL 345

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVI-GACADLAALEYGKQIHSHILVNGLDFDSV 208
              A+++F E+          ++    TV+ G C +    E   ++   ++  GL+    
Sbjct: 346 VNLALKVFDEMPEK-------NSVSYNTVLAGFCRNEQGFE-AMRLFVRMVEEGLELTDF 397

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDR- 263
             +S+V+  G  GD+  + QV     +     + +  +AL+  Y  CG+M DA ++F R 
Sbjct: 398 SLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRW 457

Query: 264 -TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLE 321
              + SSV+W +MI GY  N +  EA+ LFH  R +G V+ D    AS+L  C ++G L+
Sbjct: 458 ELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLD 517

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            GKQ+H H  K G+  ++ V +A++  Y K G   DA K+F ++   D +  NT+I+
Sbjct: 518 MGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLIS 574



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 33/245 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L  C T   + +GKQ+H H +K G L   L + N ++ MY +CG+  DA+ +F +MP
Sbjct: 504 ASMLGLCGTIGHLDMGKQIHCHVIKCG-LGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMP 562

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKA--GELKTA 122
             +  +WN +I G +     +++L+++  M     + N  ++ ++IS + +     +   
Sbjct: 563 CTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDDC 622

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKEL---NSDLVERLQCDAFI 174
           R LFN M     I      + S I      G  +EA+     +    S LV R+  D   
Sbjct: 623 RNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLLDGCR 682

Query: 175 LAT--VIG--ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           L    +IG  A  ++ ALE  K   + ILV+             NLY   G ++ +  V 
Sbjct: 683 LHKNELIGKWAAQNILALE-PKDPSTFILVS-------------NLYSASGRWDRSEMVR 728

Query: 231 NMMKE 235
             M+E
Sbjct: 729 EDMRE 733


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/559 (23%), Positives = 245/559 (43%), Gaps = 137/559 (24%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           + T+I   + ++Q C+ ++S+  GKQ H   +  G +     I+N L++MY+RC +   A
Sbjct: 39  LPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVY-ISNCLMKMYLRCSHLNYA 97

Query: 61  LLLFDEM-------------------------------PRRNCFSWNAMIEGFMKLGHKE 89
             +F++M                               P+R+  SWN+M+ GF++ G   
Sbjct: 98  YKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECR 157

Query: 90  KSLQLFNVMPQKNDFSWNM----------------------------------------L 109
           KS+ +F  M +  +  ++                                         L
Sbjct: 158 KSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSAL 217

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +  +AK   L  +  +F+++P +N + W+++I   V+N      + LFKE+    +   Q
Sbjct: 218 LDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQ 277

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
               I A+V  +CA L+AL+ G Q+H+H L      D  +G++ +++Y KC         
Sbjct: 278 S---IYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKC--------- 325

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                                 G + DA+R+F+     S   +N++I G + N +  EAL
Sbjct: 326 ----------------------GSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEAL 363

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
             F  + ++G+  +  +L+   SAC+S+     G+Q+H  + K  +  ++ VA+++LD Y
Sbjct: 364 QFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMY 423

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K                               C  + +A  +F  M  +  +SWN++I 
Sbjct: 424 GK-------------------------------CEALSEACCMFDEMERRDAVSWNAVIA 452

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
              QNG+  E L+LF +M +L +  D+F+  SV+ AC++  +L  G ++  R+   GL  
Sbjct: 453 AHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGL 512

Query: 470 DQIISTSLVDFYCKCGFIK 488
           D  +  +L+D YCKCG I+
Sbjct: 513 DSFVGGALIDMYCKCGMIE 531



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/517 (27%), Positives = 226/517 (43%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C+      +G Q+H   ++ G     +   + LL MY +C    D+L +F E+
Sbjct: 179 FAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVT-GSALLDMYAKCKRLDDSLKIFSEI 237

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N   W+A+I G ++       L+LF  M +                           
Sbjct: 238 PVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGT 297

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K DF  ++ +       +AK G L  A+ +FN +P+ +   +N++I   VRN 
Sbjct: 298 QLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNE 357

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++ F+ L   L   L  +   L+    ACA +     G+Q+HS      L   S 
Sbjct: 358 KGFEALQFFQLL---LKSGLGFNEISLSGAFSACASIKGDLDGRQLHS------LSVKST 408

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L S++            AN +L+M               Y  C  +++A  +FD      
Sbjct: 409 LRSNIC----------VANSILDM---------------YGKCEALSEACCMFDEMERRD 443

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN++I+ +  N  + E L LF  M R  +  D  T  SVL ACSS   L  G ++H 
Sbjct: 444 AVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHN 503

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  D  V  AL+D Y K                               CG IE+
Sbjct: 504 RIIKSGLGLDSFVGGALIDMYCK-------------------------------CGMIEE 532

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           AK I   +  ++++SWN++I G +      +A   F  M K+ ++ D F+ A V+ ACAN
Sbjct: 533 AKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACAN 592

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++S+ LG+Q+  ++  + L SD  I+++LVD Y KCG
Sbjct: 593 LASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCG 629



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/519 (25%), Positives = 229/519 (44%), Gaps = 106/519 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A + +SC    ++ VG QLH H LK     S + +    L MY +CG+  DA  +F+ +P
Sbjct: 281 ASVFRSCAGLSALKVGTQLHAHALKCD-FGSDITVGTATLDMYAKCGSLADAQRIFNSLP 339

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW------------------ 106
           + +   +NA+I G ++     ++LQ F ++ +     N+ S                   
Sbjct: 340 KHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQ 399

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N ++  + K   L  A  +F++M RR+A++WN++I  + +NG 
Sbjct: 400 LHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGN 459

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E + LF  +   L  R++ D F   +V+ AC+   AL  G +IH+ I+ +GL  DS +
Sbjct: 460 EEETLNLFASM---LRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFV 516

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G +L+++Y K                               CG + +A+++ DR    + 
Sbjct: 517 GGALIDMYCK-------------------------------CGMIEEAKKIHDRIEQQTM 545

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN++I+G+       +A   F++M +  V  D  T A VL AC++L  +  GKQ+HG 
Sbjct: 546 VSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQ 605

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K+ +  DV + S L+D YSK G   D+  +F +    D +  N M             
Sbjct: 606 IIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAM------------- 652

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                             I G +Q+G   EAL  F  M   ++R +  +  S++ ACA++
Sbjct: 653 ------------------ICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHM 694

Query: 450 SSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             ++ G   F A +T  GL+      + ++D   + G I
Sbjct: 695 GFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRI 733



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 185/408 (45%), Gaps = 76/408 (18%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+QLH     K  L S + +AN +L MY +C   ++A  +FDEM RR+  SWNA+I    
Sbjct: 397 GRQLH-SLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHE 455

Query: 84  KLGHKEKSLQLFNVM------PQK---------------------------------NDF 104
           + G++E++L LF  M      P +                                 + F
Sbjct: 456 QNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSF 515

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
               LI  + K G ++ A+ + + + ++  ++WN++I  +     + +A   F E+   L
Sbjct: 516 VGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEM---L 572

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              ++ D F  A V+ ACA+LA++  GKQIH  I+   L  D  + S+LV++        
Sbjct: 573 KMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDM-------- 624

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                  Y+ CG M D+  VF++  +   V WN+MI GY  +  
Sbjct: 625 -----------------------YSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGL 661

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVAS 343
             EAL  F +M+   V  + +T  S+L AC+ +GF++ G    +    + G+   +   S
Sbjct: 662 GEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYS 721

Query: 344 ALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAK 390
            ++D   + G  S+A KL  E+    D ++  T++++    G IE A+
Sbjct: 722 CMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAE 769


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 162/318 (50%), Gaps = 40/318 (12%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C+++  L   +QIH  +L  GL  D +  S L+                        FC 
Sbjct: 28  CSNMEEL---RQIHGQMLKTGLILDEIPASKLLA-----------------------FCA 61

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           S       N G +  AR VFDR    ++ MWN+MI GY ++ E  EALLL+H M  + V 
Sbjct: 62  SP------NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVP 115

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +A T   +L ACSS+   E  +Q+H H  K+G   ++   ++LL+ YSK G    A  L
Sbjct: 116 HNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLL 175

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F ++   DT+  N+MI  Y+ CG IE A  IF  MP +++ISW SMI G    G P EAL
Sbjct: 176 FDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEAL 235

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           +LF  M    +++D  +L S + ACA++  L+ G+ + A +    ++ D I+   L+D Y
Sbjct: 236 NLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMY 295

Query: 482 CKCG--------FIKMDE 491
            KCG        F KM+E
Sbjct: 296 AKCGDLEEAIEVFRKMEE 313



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 181/377 (48%), Gaps = 35/377 (9%)

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           +G L  ART+F+ + R N   WN+MI  Y  +    EA+ L+  +   L   +  +A+  
Sbjct: 65  SGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM---LYHSVPHNAYTF 121

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++ AC+ ++A E  +QIH+HI+  G   +    +SL+N+Y K GD  SA  + + + +
Sbjct: 122 PFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            D    +++I GY  CG++  A  +F+   + + + W SMISG +   +  EAL LFH+M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +  G+  D   L S L AC+ LG L+ GK +H +  K  +  D I+   L+D Y+K    
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAK---- 297

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                                      CG +E+A  +FR M  K +  W +MI G + +G
Sbjct: 298 ---------------------------CGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIIS 474
              EAL+ F  M    +  ++ +   +++AC++   +   + +F  +  I G        
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 475 TSLVDFYCKCGFIKMDE 491
             +VD   + G +K  E
Sbjct: 391 GCMVDLLGRAGLLKEAE 407



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 162/358 (45%), Gaps = 67/358 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C++  +    +Q+H H +K G   S +   N LL +Y + G+   A LLFD++ +R
Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMG-FGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQR 182

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+MI+G+ K G  E + ++FN MP++N  SW  +ISG   AG+ K A  LF+ M 
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                                                ++ D   L + + ACADL  L+ 
Sbjct: 243 TAG----------------------------------IKLDNVALVSTLQACADLGVLDQ 268

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH++I  + ++ D +LG  L+++Y KCGD   A +V   M+E      +A+ISGYA 
Sbjct: 269 GKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI 328

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+                                 EAL  F KM+  GV  +  T   +
Sbjct: 329 HGR-------------------------------GREALEWFMKMQTAGVEPNQMTFTGI 357

Query: 311 LSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           L+ACS  G +   K +     ++ G    +     ++D   + G+  +A +L   + V
Sbjct: 358 LTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPV 415



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   LQ+C     +  GK +H  ++KK  +     +   L+ MY +CG+  +A+ +F +M
Sbjct: 253 LVSTLQACADLGVLDQGKWIHA-YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM 311

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             +    W AMI G+   G   ++L+ F  M     + N  ++  +++  + AG +  A+
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF  M R +        +  M+    R G  +EA  L + +       ++ +A I   +
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMP------VKPNAAIWGAL 425

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL---YGKCGDFNSANQVLNMMKE 235
           + AC     LE GKQI   IL+     D   G   ++L   +   G++N A +V   MKE
Sbjct: 426 LNACHIHGNLELGKQI-GKILIQ---VDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 32/186 (17%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +A+    +L  CS++   E  +Q+HG   K G+I D I AS LL                
Sbjct: 17  NAAQTLHLLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLL---------------- 57

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                              + G +  A+ +F  +   +   WN+MI G S +  P EAL 
Sbjct: 58  -------------AFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALL 104

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L+ +M    +  + ++   ++ AC+++S+ E  +Q+ A +  +G  S+   + SL++ Y 
Sbjct: 105 LYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYS 164

Query: 483 KCGFIK 488
           K G IK
Sbjct: 165 KSGDIK 170


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 237/484 (48%), Gaps = 43/484 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L+SC++   I  G+Q+H    K G+  +T  I N L+ MY +CG+  +A LLFD  
Sbjct: 56  LVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTF-IQNSLINMYAKCGDIKNAQLLFD-- 112

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                        GF  L                +  S N+++SG+ + G++  AR LF+
Sbjct: 113 -------------GFATL----------------DSVSCNIMVSGYVRNGQIDNARKLFD 143

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP +  +++ +MI  +V+NGF REA+ +FK++ S  V     +   L  VI AC+ L  
Sbjct: 144 VMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVP---NDLTLVNVISACSHLGE 200

Query: 188 LEYGKQIHSHIL---VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           +   + +H  ++   V GL    ++ ++L++ Y  C     A ++ + M E +    + +
Sbjct: 201 VLNCRMVHGLVVKMFVVGL---VIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVM 257

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           ++GYA  G +++AR +FD   D   + W +MI GYI      EAL ++  M + G   + 
Sbjct: 258 LNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNE 317

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
             + +++SAC     +  G Q+HG   K G      + + ++  Y+  GM   AC  F E
Sbjct: 318 VMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQF-E 376

Query: 365 LKVYDTI-LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           + V D +   N +   +   G ++ A   F  M  + + SW++MI G +Q+  P  AL+L
Sbjct: 377 VGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALEL 436

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M    ++ ++ ++ SV SA A + +L+ G+     +    +  +  +  +L+D Y K
Sbjct: 437 FHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAK 496

Query: 484 CGFI 487
           CG I
Sbjct: 497 CGSI 500



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 177/315 (56%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           L + + +C+ L+ +  G+QIHS I   GL F++ + +SL+N+Y KCGD  +A  + +   
Sbjct: 56  LVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFA 115

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
             D    + ++SGY   G++++AR++FD   +   V + +MI G++ N    EAL +F  
Sbjct: 116 TLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKD 175

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           MR  GV+ +  TL +V+SACS LG + + + VHG   K+ V+  VIV++ L+  Y     
Sbjct: 176 MRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSG 235

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             +A +LF E+   + +  N M+  Y+  G +++A+ +F  + +K +ISW +MI G  Q 
Sbjct: 236 VREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQK 295

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G   EAL+++  M +     ++  + +++SAC   +++  G Q+   V   G D    I 
Sbjct: 296 GRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQ 355

Query: 475 TSLVDFYCKCGFIKM 489
           T+++ FY  CG + +
Sbjct: 356 TTIIYFYAACGMMDL 370



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 185/373 (49%), Gaps = 36/373 (9%)

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
            ++ +LF+ MP++N  +WN++++G+AK G +  AR LF+ +  ++ I+W +MI  Y++ G
Sbjct: 237 REARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKG 296

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             REA+ +++ +   L      +  ++  ++ AC    A+  G Q+H  ++  G D  + 
Sbjct: 297 RLREALEIYRAM---LQTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNF 353

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++++  Y  CG  + A     +  +      +AL +G+   G M+ A + FD+     
Sbjct: 354 IQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRD 413

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              W++MISGY  +     AL LFHKM   G+  +  T+ SV SA ++LG L+ GK  H 
Sbjct: 414 VFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHE 473

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +                               + SE   ++  L   +I +Y+ CG I  
Sbjct: 474 Y-------------------------------MRSESIPFNDNLRAALIDMYAKCGSINS 502

Query: 389 AKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           A   F  + ++  S+  WN++I GL+ +G     L++F +M +  ++ +  +   V+SAC
Sbjct: 503 ALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSAC 562

Query: 447 ANISSLELGEQVF 459
            +   +E G+++F
Sbjct: 563 CHAGLVESGKRIF 575



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 416 SPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           +P   + +F N  N  +    + +L S + +C+++S +  G Q+ + +  +GL  +  I 
Sbjct: 32  NPQHFIHIFTNARNHQNHHDSELALVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQ 91

Query: 475 TSLVDFYCKCGFIK 488
            SL++ Y KCG IK
Sbjct: 92  NSLINMYAKCGDIK 105


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 214/447 (47%), Gaps = 37/447 (8%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G   H + LK G ++    I N +L MY + G    A  LF++M  R    WN+MI G  
Sbjct: 114 GNMFHAYVLKLGHIDDHF-IRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCW 172

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           K G++ +++ LFN+MP +N  +W  +++G+AK G+L++AR  F++MP R+ ++WN+M   
Sbjct: 173 KSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSA 232

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y +    +EA+ LF ++   L E +  D       I +C+ +        I   I    +
Sbjct: 233 YAQKECPKEALNLFHQM---LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEPDDFCLSALISGYANCGKMNDARRVFD 262
             +S + ++L++++ K G+   A  + + +  + +    + +IS Y   GK++ AR +FD
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLE 321
                  V WNSMI+GY  N E   ++ LF +M     +  D  T+ASVLSAC  +G L+
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
               V     +  +   +   ++L+  YSK G  +DA ++F  +   D +  NT+I+   
Sbjct: 410 LSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLIS--- 466

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                                       G + NG   EA+ L   M +  +  D  +   
Sbjct: 467 ----------------------------GFAANGHGKEAIKLVLTMEEEGIEPDHVTYIG 498

Query: 442 VISACANISSLELGEQVFARVTIIGLD 468
           V++AC++   L  G+ VF  +    +D
Sbjct: 499 VLTACSHAGLLNEGKNVFKSIQAPTVD 525



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 171/383 (44%), Gaps = 69/383 (18%)

Query: 55  GNPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNML 109
           G+PT A  +   + ++    N F   A+++   K G+ E +  +F+ +  Q+N  +WN++
Sbjct: 272 GDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIM 331

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           IS + + G+L  AR LF++MP+R+ ++WNSMI  Y +NG +  ++ LFKE+ S +   +Q
Sbjct: 332 ISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCM--DIQ 389

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D   +A+V+ AC  + AL+    +           D V      N+      FNS    
Sbjct: 390 PDEVTIASVLSACGHIGALKLSYWV----------LDIVREK---NIKLGISGFNS---- 432

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                         LI  Y+ CG + DA R+F        V +N++ISG+ +N    EA+
Sbjct: 433 --------------LIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAI 478

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG---------HACKV------G 334
            L   M   G+  D  T   VL+ACS  G L  GK V           +AC V      G
Sbjct: 479 KLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAG 538

Query: 335 VIDDVI-------------VASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            +D+               V  +LL+    + + G+   A     EL+  +      +  
Sbjct: 539 ELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSN 598

Query: 379 VYSSCGRIEDAKHIFRTMPNKSL 401
           +Y+S GR ED K +   M    L
Sbjct: 599 IYASFGRWEDVKRVREMMKKGGL 621



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 181/428 (42%), Gaps = 103/428 (24%)

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           ++F   P  +A  ++ M+  Y R G   + V LFK  +S     L+   F+   +I    
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHS---LNLRPQPFVYIYLIKL-- 109

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG------------------DFNS 225
              A + G   H+++L  G   D  + ++++++Y K G                  D+NS
Sbjct: 110 ---AGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNS 166

Query: 226 -------------ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                        A  + NMM   +    +++++GYA  G +  ARR FD   + S V W
Sbjct: 167 MISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSW 226

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N+M S Y       EAL LFH+M   G+  D +T    +S+CSS+G              
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG-------------- 272

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
                D  +A ++L    ++ +            V ++ +   ++ +++  G +E A++I
Sbjct: 273 -----DPTLADSILRMIDQKHI------------VLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 393 FRTM-PNKSLISW-------------------------------NSMIVGLSQNGSPIEA 420
           F  +   ++ ++W                               NSMI G +QNG    +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 421 LDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           ++LF  M + +D++ D+ ++ASV+SAC +I +L+L   V   V    +        SL+ 
Sbjct: 376 IELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIF 435

Query: 480 FYCKCGFI 487
            Y KCG +
Sbjct: 436 MYSKCGSV 443



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 31/198 (15%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGM---------------------------- 354
           G   H +  K+G IDD  + +A+LD Y+K G                             
Sbjct: 114 GNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWK 173

Query: 355 ---PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
               ++A  LF+ +   + I   +M+T Y+  G +E A+  F  MP +S++SWN+M    
Sbjct: 174 SGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAY 233

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +Q   P EAL+LF  M +  +  D  +    IS+C++I    L + +   +    +  + 
Sbjct: 234 AQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNS 293

Query: 472 IISTSLVDFYCKCGFIKM 489
            + T+L+D + K G +++
Sbjct: 294 FVKTALLDMHAKFGNLEI 311


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 236/516 (45%), Gaps = 106/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H      G+    + +  +L+ MY+ CG+      +FD +   
Sbjct: 63  VLQLCAELKSLEDGKRVHSIISSNGMAIDEV-LGAKLVFMYVNCGDLVKGRRIFDGILND 121

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFA------------ 114
             F WN ++  + K+G+  +S+ LF  M +     + +++  ++ GFA            
Sbjct: 122 KIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVH 181

Query: 115 -----------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                                  K GE+++AR LF+++  R+ ++WNSMI     NGF+R
Sbjct: 182 GYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSR 241

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             +  F ++   L   +  D+  L  V+ ACA++  L  G+ +H++ +  G     +  +
Sbjct: 242 NGLEFFIQM---LNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNN 298

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y KC                               G +N A  VF +  +T+ V 
Sbjct: 299 TLLDMYSKC-------------------------------GNLNGANEVFVKMGETTIVS 327

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+I+ ++      EA+ LF +M+  G+  D   + SV+ AC+    L+ G++VH H  
Sbjct: 328 WTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIK 387

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  +  ++ V++AL++ Y+K G   +A  +FS+L V + +  NTMI              
Sbjct: 388 KNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIG------------- 434

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             G SQN  P EAL LF +M K  L+ D  ++A V+ ACA +++
Sbjct: 435 ------------------GYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAGLAA 475

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           LE G ++   +   G  SD  ++ +LVD Y KCG +
Sbjct: 476 LEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLL 511



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 209/474 (44%), Gaps = 106/474 (22%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG--- 81
           K++H + LK G   S   + N L+  Y +CG    A +LFDE+  R+  SWN+MI G   
Sbjct: 178 KRVHGYVLKLG-FGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTM 236

Query: 82  -------------FMKLGHKEKSLQLFNVMPQ------------------KNDFSW---- 106
                         + LG    S  L NV+                    K  FS     
Sbjct: 237 NGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMF 296

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N L+  ++K G L  A  +F  M     ++W S+I  +VR G   EA+ LF E+ S   
Sbjct: 297 NNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQS--- 353

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           + L+ D + + +V+ ACA   +L+ G+++H+HI  N +      GS+L            
Sbjct: 354 KGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNM------GSNL----------PV 397

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           +N ++NM               YA CG M +A  +F +    + V WN+MI GY  N+  
Sbjct: 398 SNALMNM---------------YAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLP 442

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EAL LF  M++  +  D  T+A VL AC+ L  LE G+++HGH  + G   D+ VA AL
Sbjct: 443 NEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACAL 501

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y K                               CG +  A+ +F  +P K +I W 
Sbjct: 502 VDMYVK-------------------------------CGLLVLAQQLFDMIPKKDMILWT 530

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            MI G   +G   EA+  F  M    +  ++ S  S++ AC +   L+ G ++F
Sbjct: 531 VMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLF 584



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 75/355 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++ +G+ LH + +K G     +   N LL MY +CGN   A  +F +M
Sbjct: 262 LVNVLVACANVGNLTLGRALHAYGVKAGFSGGVM-FNNTLLDMYSKCGNLNGANEVFVKM 320

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
                 SW ++I   ++ G   +++ LF+ M                             
Sbjct: 321 GETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGR 380

Query: 100 ------QKNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                 +KN+   N+ +S      +AK G ++ A  +F+ +P +N ++WN+MI  Y +N 
Sbjct: 381 EVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNS 440

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF     D+ ++L+ D   +A V+ ACA LAALE G++IH HIL  G   D  
Sbjct: 441 LPNEALQLF----LDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLH 496

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +  +LV++Y KCG    A Q+ +M+ + D    + +I+GY   G        F +     
Sbjct: 497 VACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHG--------FGK----- 543

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                             EA+  F KMR  G+  + S+  S+L AC+  G L+ G
Sbjct: 544 ------------------EAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEG 580



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 156/362 (43%), Gaps = 75/362 (20%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N+ I  +   G  R A++L         +R + +     +V+  CA+L +LE GK++HS 
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSR-----SQRSELELNTYCSVLQLCAELKSLEDGKRVHSI 82

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           I  NG+  D VLG+ LV +Y  CGD                     L+ G          
Sbjct: 83  ISSNGMAIDEVLGAKLVFMYVNCGD---------------------LVKG---------- 111

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           RR+FD   +    +WN ++S Y       E++ LF KM+  G+  D+ T   VL   ++ 
Sbjct: 112 RRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAAS 171

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             +   K+VHG+  K+G      V ++L+  Y K G    A  LF EL            
Sbjct: 172 AKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDEL------------ 219

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                               ++ ++SWNSMI G + NG     L+ F  M  L + +D  
Sbjct: 220 -------------------SDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSA 260

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------FIKM 489
           +L +V+ ACAN+ +L LG  + A     G     + + +L+D Y KCG        F+KM
Sbjct: 261 TLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKM 320

Query: 490 DE 491
            E
Sbjct: 321 GE 322



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 20/203 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    ++  G+++H H L+KG   S L +A  L+ MY++CG    A  LFD +
Sbjct: 463 MACVLPACAGLAALEKGREIHGHILRKGYF-SDLHVACALVDMYVKCGLLVLAQQLFDMI 521

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKT 121
           P+++   W  MI G+   G  ++++  F  M      P+++ F+   ++     +G LK 
Sbjct: 522 PKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFT--SILYACTHSGLLKE 579

Query: 122 ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
              LF+ M     I      +  M+   +R+G    A +  + +       ++ DA I  
Sbjct: 580 GWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETM------PIKPDAAIWG 633

Query: 177 TVIGACADLAALEYGKQIHSHIL 199
            ++  C     +E  +++  HI 
Sbjct: 634 ALLSGCRIHHDVELAEKVAEHIF 656



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 34/240 (14%)

Query: 250 NCGKMNDARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           +CG           TT +  +V  N+ I  +    +   A+ L  + +R+ +  + +T  
Sbjct: 4   SCGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSEL--ELNTYC 61

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           SVL  C+ L  LE GK+VH                      S  GM              
Sbjct: 62  SVLQLCAELKSLEDGKRVH-------------------SIISSNGM------------AI 90

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +L   ++ +Y +CG +   + IF  + N  +  WN ++   ++ G+  E++ LF  M 
Sbjct: 91  DEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQ 150

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +L +R D ++   V+   A  + +   ++V   V  +G  S   +  SL+  Y KCG ++
Sbjct: 151 ELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVE 210


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 220/474 (46%), Gaps = 104/474 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G  +  L +   L+ MY++ G   DA  +FD+   R
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLG-YDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR 152

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A                               LI+G+A  G + +A+ +F+++P
Sbjct: 153 DVVSYTA-------------------------------LITGYASKGYIASAQKMFDEIP 181

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+MI  Y   G  +EA+ LFKE+   +   ++ D   + +V+ ACA  A++E 
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEM---MKTNVRPDESTMVSVVSACAQSASIEL 238

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G                    F S  +++N           ALI  Y  
Sbjct: 239 GRQVHSWIDDHG--------------------FGSNLKIVN-----------ALIDLYIK 267

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG++  A  +F+  +    + WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 268 CGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 327

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG +E G+ +H +  K   GV +     ++L+D Y+K                 
Sbjct: 328 LPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAK----------------- 370

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A+ +F ++ N+SL SWN+MI G + +G    A D+F  M 
Sbjct: 371 --------------CGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 416

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           K ++  D  +   ++SAC++   L+LG  +F       +  D  I+  L  + C
Sbjct: 417 KNEIEPDDITFVGLLSACSHSGMLDLGRHIFR-----SMKEDYKITPKLEHYGC 465



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 177/372 (47%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  +     A+ L+  + S     L  + +    +
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMIS---LGLLPNCYTFPFL 94

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   A   G+QIH H+L  G D D  + +SL+++Y + G    A +V +     D 
Sbjct: 95  LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G +  A+++FD       V WN+MISGY     + EAL LF +M + 
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ SV+SAC+    +E G+QVH      G   ++ + +AL+D Y K G    A
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I  NT+I  Y+     ++A  +F+ M              L    SP 
Sbjct: 275 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM--------------LRSGESP- 319

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
                           +  ++ S++ ACA++ ++E+G    V+    + G+ +     TS
Sbjct: 320 ----------------NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS 363

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 364 LIDMYAKCGDIE 375


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 193/393 (49%), Gaps = 73/393 (18%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+S + + G+L  AR LF+ +P  N   W  +     R GF  EA+  F E+     E L
Sbjct: 68  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQK---EGL 124

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + + F+L +++ AC  L+    G+ +H+ IL N  + D+ + S+L+ +Y KCG    A +
Sbjct: 125 RPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACR 184

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRV----------------------FDRTTD 266
           V + + + D   ++A++SGYA  G +++A  +                      F +  D
Sbjct: 185 VFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGD 244

Query: 267 TS-----------------SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            S                  V W S+ISG++ N  + E    F +M   G    + T++S
Sbjct: 245 KSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISS 304

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L AC+++  L HGK++HG+A  +GV  DV V SAL+D Y+K                  
Sbjct: 305 LLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAK------------------ 346

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        CG I +AK +F  MP ++ ++WNS+I G + +G   EA++LF  M +
Sbjct: 347 -------------CGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE 393

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARV 462
            D ++D  +  +V++AC++   +ELGE +F ++
Sbjct: 394 SDTKLDHLTFTAVLNACSHAGMVELGESLFRKM 426



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 185/404 (45%), Gaps = 49/404 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C        G+ +H   LK     S   I + L+ MY +CG+   A  +FD +
Sbjct: 131 LPSILKACGHLSDRRTGENMHTVILKNS-FESDAYIISALIYMYSKCGHVEKACRVFDWI 189

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             ++    NAM+ G+ + G   ++L L   M Q     N  SWN LI+GF++ G+     
Sbjct: 190 VDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVS 249

Query: 124 TLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  M       + ++W S+I  +V+N    E    FKE+   L +     +  +++++
Sbjct: 250 EVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEM---LDQGFCPSSVTISSLL 306

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            AC ++A L +GK+IH + +V G++ D  + S+LV++Y KCG  + A  +  MM E +  
Sbjct: 307 PACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTV 366

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
             ++LI GYAN G  N                               EA+ LF++M  + 
Sbjct: 367 TWNSLIFGYANHGYCN-------------------------------EAIELFNQMEESD 395

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDA 358
              D  T  +VL+ACS  G +E G+ +     +   I+  +   A ++D   + G  S+A
Sbjct: 396 TKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEA 455

Query: 359 CKLFSELKVY-DTILLNTMITVYSSCGRIE----DAKHIFRTMP 397
             L   + V  D  +   ++    + G IE     A+H+F   P
Sbjct: 456 YDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEP 499



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 45/297 (15%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + L+S Y  CG++++AR++FD+  +T+   W  +           EAL  F +M++ G+ 
Sbjct: 66  AKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLR 125

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +   L S+L AC  L     G+ +H    K     D  + SAL+  YSK G    AC++
Sbjct: 126 PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 185

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNG 415
           F  +   D +++N M++ Y+  G + +A ++ + M      PN  ++SWN++I G SQ G
Sbjct: 186 FDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPN--VVSWNTLIAGFSQVG 243

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVIS------------------------------- 444
                 ++F  M    +  D  S  SVIS                               
Sbjct: 244 DKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTIS 303

Query: 445 ----ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE--YYLM 495
               AC N+++L  G+++     +IG++ D  + ++LVD Y KCG+I   +  +Y+M
Sbjct: 304 SLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMM 360



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 115/230 (50%), Gaps = 21/230 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C    ++  GK++H + +  G+    + + + L+ MY +CG  ++A +LF  M
Sbjct: 302 ISSLLPACTNVANLRHGKEIHGYAMVIGV-EKDVYVRSALVDMYAKCGYISEAKILFYMM 360

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P RN  +WN++I G+   G+  ++++LFN M +     +  ++  +++  + AG ++   
Sbjct: 361 PERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGE 420

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +LF  M  +  I      +  M+    R G   EA  L K +       ++ D F+   +
Sbjct: 421 SLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMP------VEPDKFVWGAL 474

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV--NLYGKCGDFNSA 226
           +GAC +   +E  +    H+    L+ +S  GSSL+  NLY   G + +A
Sbjct: 475 LGACRNHGNIELAEVAAEHLF--ELEPESP-GSSLLLSNLYADAGRWGNA 521


>gi|255575334|ref|XP_002528570.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532014|gb|EEF33825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 542

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 197/377 (52%), Gaps = 12/377 (3%)

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           T R + N +P  +  ++ ++ + +  +    + +RL  ++   L +    D  +L +VI 
Sbjct: 56  TGRAI-NSVPESSFQSFYTLFNEFTNHNQFGQVIRLSSQM---LSQGFLLDRHVLPSVIK 111

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           ACA L+ L+  KQ+H    V+G   DS + SSLV++Y KC     A++V + + +PD   
Sbjct: 112 ACAGLSFLKTAKQVHCMASVSGFGSDSRVLSSLVHMYIKCNRLKDAHKVFDKLSQPDVVA 171

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMR 296
            SAL++GYA  G + +   +F +  D       + WN MI+G+  +    +A+++F  M 
Sbjct: 172 YSALLAGYARRGCIGETMELFSKRGDLGVELNLISWNGMIAGFNHSRHHLDAVIIFQNMH 231

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
                 D ++++SVLSA   L  L+ G Q+HG+  K G+  D  V SAL+D Y K     
Sbjct: 232 CEEFKPDGTSISSVLSAVGDLKMLDMGFQIHGYVIKQGLCQDKCVVSALIDMYGKCACTM 291

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLS 412
              ++F E+   D    N ++T  S  G ++ A  +FR   ++ +    +SW S+I   S
Sbjct: 292 KISEVFDEMYHMDVGACNALVTGLSRNGLVDKALQVFRRFKDQGMELNVVSWTSIIASCS 351

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           QNG  IEAL+LF  M  + ++ +  ++  ++ AC NI++L  G+         G+ S+  
Sbjct: 352 QNGKDIEALELFREMQVVGVKPNAVTIPCLLPACGNIAALMHGKAAHCFSLKSGISSNVY 411

Query: 473 ISTSLVDFYCKCGFIKM 489
           + ++LVD Y KCG I +
Sbjct: 412 VGSALVDMYAKCGRIHI 428



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 217/456 (47%), Gaps = 66/456 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++++C     +   KQ+H      G   S   + + L+ MY++C    DA  +FD++
Sbjct: 106 LPSVIKACAGLSFLKTAKQVHCMASVSG-FGSDSRVLSSLVHMYIKCNRLKDAHKVFDKL 164

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
            + +  +++A++ G+ + G   ++++LF                  +K G+L        
Sbjct: 165 SQPDVVAYSALLAGYARRGCIGETMELF------------------SKRGDLGV------ 200

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                N I+WN MI  +  +    +AV +F+ ++    E  + D   +++V+ A  DL  
Sbjct: 201 ---ELNLISWNGMIAGFNHSRHHLDAVIIFQNMH---CEEFKPDGTSISSVLSAVGDLKM 254

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L+ G QIH +++  GL  D  + S+L+++YGKC      ++V + M   D    +AL++G
Sbjct: 255 LDMGFQIHGYVIKQGLCQDKCVVSALIDMYGKCACTMKISEVFDEMYHMDVGACNALVTG 314

Query: 248 YANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            +  G ++ A +VF R  D     + V W S+I+    N +D EAL LF +M+  GV  +
Sbjct: 315 LSRNGLVDKALQVFRRFKDQGMELNVVSWTSIIASCSQNGKDIEALELFREMQVVGVKPN 374

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
           A T+  +L AC ++  L HGK  H  + K G+  +V V SAL+D Y+K            
Sbjct: 375 AVTIPCLLPACGNIAALMHGKAAHCFSLKSGISSNVYVGSALVDMYAK------------ 422

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CGRI  ++  F  MP ++L+SWN+++ G + +G   EA+ +
Sbjct: 423 -------------------CGRIHISRLCFDIMPTRNLVSWNALMAGYAMHGQTKEAISI 463

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F  M +   + D  S  SV+SAC+       G   F
Sbjct: 464 FQRMQRSGQKPDFVSFISVLSACSQGGKTNEGWSYF 499



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 123/242 (50%), Gaps = 4/242 (1%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y N     +  R  +   ++S   + ++ + + ++N+  + + L  +M   G L D   L
Sbjct: 47  YENHHSFTNTGRAINSVPESSFQSFYTLFNEFTNHNQFGQVIRLSSQMLSQGFLLDRHVL 106

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SV+ AC+ L FL+  KQVH  A   G   D  V S+L+  Y K     DA K+F +L  
Sbjct: 107 PSVIKACAGLSFLKTAKQVHCMASVSGFGSDSRVLSSLVHMYIKCNRLKDAHKVFDKLSQ 166

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDL 423
            D +  + ++  Y+  G I +   +F    +     +LISWN MI G + +   ++A+ +
Sbjct: 167 PDVVAYSALLAGYARRGCIGETMELFSKRGDLGVELNLISWNGMIAGFNHSRHHLDAVII 226

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F NM+  + + D  S++SV+SA  ++  L++G Q+   V   GL  D+ + ++L+D Y K
Sbjct: 227 FQNMHCEEFKPDGTSISSVLSAVGDLKMLDMGFQIHGYVIKQGLCQDKCVVSALIDMYGK 286

Query: 484 CG 485
           C 
Sbjct: 287 CA 288



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++  GK  H   LK GI +S + + + L+ MY +CG    + L FD MP R
Sbjct: 381 LLPACGNIAALMHGKAAHCFSLKSGI-SSNVYVGSALVDMYAKCGRIHISRLCFDIMPTR 439

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP---QKNDF-SWNMLISGFAKAGELKTARTLF 126
           N  SWNA++ G+   G  ++++ +F  M    QK DF S+  ++S  ++ G+     + F
Sbjct: 440 NLVSWNALMAGYAMHGQTKEAISIFQRMQRSGQKPDFVSFISVLSACSQGGKTNEGWSYF 499

Query: 127 NDMPRRNAI---AWNSMIHC 143
           N M     +    W++  +C
Sbjct: 500 NSMSNDYVLRVKCWDASSYC 519



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 53/119 (44%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T L    + +Y +     +      ++P  S  S+ ++    + +    + + L   M  
Sbjct: 37  TYLATNPLPLYENHHSFTNTGRAINSVPESSFQSFYTLFNEFTNHNQFGQVIRLSSQMLS 96

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
               +D+  L SVI ACA +S L+  +QV    ++ G  SD  + +SLV  Y KC  +K
Sbjct: 97  QGFLLDRHVLPSVIKACAGLSFLKTAKQVHCMASVSGFGSDSRVLSSLVHMYIKCNRLK 155


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 223/518 (43%), Gaps = 105/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    S+   K++H H LK     S + + N ++ MY +CG+  DA  +FD M   
Sbjct: 165 LVLACANFRSLDYAKKIHDHVLKSNYQPSII-LQNHMINMYGKCGSMKDARKVFDTMQLP 223

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-------------------------- 104
           N  SW +MI G+ + G    ++ ++  M +   F                          
Sbjct: 224 NVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLH 283

Query: 105 -----SW--------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                SW        N LIS +   G+++ A  +F  +P ++ I+W +MI  Y++ G+  
Sbjct: 284 AHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRV 343

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF++L        Q + FI  +V  AC+ L  LEYGKQ+H   +  GL  +   G 
Sbjct: 344 EALYLFRDLLRQ--GTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGC 401

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL ++Y K G   SA      +K PD    +A+I+ +A+ G  N                
Sbjct: 402 SLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDAN---------------- 445

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                          EA+  F +M   G+  D+ T  S+L  C S   L  G+Q+H +  
Sbjct: 446 ---------------EAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIV 490

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K+G   ++ V ++LL                               T+Y+ C  + DA +
Sbjct: 491 KIGFDKEITVCNSLL-------------------------------TMYTKCSHLHDALN 519

Query: 392 IFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
           +FR +  N +L+SWN+++    Q     E   L+  M+    + D  ++ +++  CA ++
Sbjct: 520 VFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELT 579

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           SL +G QV       GL  D  +   L+D Y KCG +K
Sbjct: 580 SLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLK 617



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 235/531 (44%), Gaps = 108/531 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              ++++C     I +G+QLH H +K       L   N L+ MY   G    A  +F  +
Sbjct: 263 FGSVIKACYIAGDIDLGRQLHAHVIKSW-FGHHLTSQNALISMYTNFGQIEHASNVFTRI 321

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
           P ++  SW  MI G+++LG++ ++L LF  + ++  +  N  I G               
Sbjct: 322 PTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYG 381

Query: 113 -------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                    +AK G L +A+  F  +   + ++WN++I  +  N
Sbjct: 382 KQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADN 441

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G A EA+  F+++   +   L  D+    +++  C     L  G+QIHS+I+  G D + 
Sbjct: 442 GDANEAIDFFRQM---IHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEI 498

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF-DRTTD 266
            + +SL+ +Y KC                                 ++DA  VF D + +
Sbjct: 499 TVCNSLLTMYTKCS-------------------------------HLHDALNVFRDISRN 527

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V WN+++S  +   ++ E   L+ +M  +G   D+ T+ ++L  C+ L  L  G QV
Sbjct: 528 ANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQV 587

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H ++ K G+I DV V + L+D Y+K                               CG +
Sbjct: 588 HCYSIKSGLILDVSVCNGLIDMYAK-------------------------------CGSL 616

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + A+ +F +  N  ++SW+S+IVG +Q G   EAL+LF  M  L ++ ++ +    +SAC
Sbjct: 617 KHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSAC 676

Query: 447 ANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           ++I  +E G +++  + T  G+   +   + +VD   + G +   E ++ +
Sbjct: 677 SHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQK 727



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 149/313 (47%), Gaps = 63/313 (20%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            +++ ACA+  +L+Y K+IH H+L +      +L + ++N+YGK                
Sbjct: 163 TSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGK---------------- 206

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                          CG M DAR+VFD     + V W SMISGY  N +  +A++++ +M
Sbjct: 207 ---------------CGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQM 251

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            R+G   D  T  SV+ AC   G ++ G+Q+H H  K               ++    + 
Sbjct: 252 TRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIK---------------SWFGHHLT 296

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           S                 N +I++Y++ G+IE A ++F  +P K LISW +MI G  Q G
Sbjct: 297 SQ----------------NALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLG 340

Query: 416 SPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
             +EAL LF ++  +   + ++F   SV SAC+++  LE G+QV       GL  +    
Sbjct: 341 YRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAG 400

Query: 475 TSLVDFYCKCGFI 487
            SL D Y K GF+
Sbjct: 401 CSLCDMYAKFGFL 413



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 111/240 (46%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C    S+ VG Q+H + +K G++   + + N L+ MY +CG+   A  +FD  
Sbjct: 568 ITTLLGTCAELTSLGVGNQVHCYSIKSGLI-LDVSVCNGLIDMYAKCGSLKHARDVFDST 626

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SW+++I G+ + G   ++L LF +M     Q N+ ++   +S  +  G ++   
Sbjct: 627 QNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGW 686

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA-- 176
            L+  M   + I      ++ ++    R G   EA           +++   DA I A  
Sbjct: 687 RLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEA--------ETFIQKSGLDADITAWK 738

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           T++ AC     ++  ++   +IL   LD  +S     L N++   G++    ++  +MK+
Sbjct: 739 TLLAACKTHNNVDIAERGAGNIL--KLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQ 796


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 235/518 (45%), Gaps = 106/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C    S+  GK LH   L+ G       +   L+ MY +CG   DAL +F ++
Sbjct: 54  LSTVLKGCANTGSLREGKVLHALALRSGCEIDEF-LGCSLVDMYSKCGTVYDALKVFTKI 112

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
              +  +W+AMI G  + GH +++ +LF++M +K    N F+ + L+S     G+L+  +
Sbjct: 113 RNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQ 172

Query: 124 TL-----------------------------------FNDMPRRNAIAWNSMIHCYVRNG 148
           ++                                   F  M   + ++WN+++  +  + 
Sbjct: 173 SIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQ 232

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
                 R+F ++   L+E  + + F   +V+ +C+ L   E+GKQ+H+HI+ N  D D  
Sbjct: 233 TCGRGPRIFYQM---LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDF 289

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV++                               YA    + DA   FDR  +  
Sbjct: 290 VGTALVDM-------------------------------YAKARCLEDAGVAFDRLVNRD 318

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              W  +ISGY   ++  +A+  F +M+R G+  +  TLAS LS CS +  LE+G+Q+H 
Sbjct: 319 IFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHA 378

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   D+ V SAL+D Y K                               CG +E 
Sbjct: 379 VAVKAGHFGDIFVGSALVDLYGK-------------------------------CGCMEH 407

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ IF+ + ++ ++SWN++I G SQ+G   +AL+ F  M    +  D+ +   V+SAC+ 
Sbjct: 408 AEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSF 467

Query: 449 ISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG 485
           +  +E G++ F  ++ I G++        +VD   + G
Sbjct: 468 MGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAG 505



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 194/447 (43%), Gaps = 112/447 (25%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA----FI 174
           ++ A  LF  MP +N ++WN++++ Y + G  ++ ++LF ++        +C+     F 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMK-------ECETKFSKFT 53

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           L+TV+  CA+  +L  GK +H+  L +G + D  LG SLV++Y KCG    A +V   ++
Sbjct: 54  LSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIR 113

Query: 235 EPD-----------------------------------DFCLSALISGYANCGKM----- 254
            PD                                    F LS+L+S   N G +     
Sbjct: 114 NPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQS 173

Query: 255 ------------------------------NDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                          D  +VF+  T+   V WN+++SG+  +  
Sbjct: 174 IHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQT 233

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
                 +F++M   G   +  T  SVL +CSSL   E GKQVH H  K    DD  V +A
Sbjct: 234 CGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA 293

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+D Y+K                             + C  +EDA   F  + N+ + SW
Sbjct: 294 LVDMYAK-----------------------------ARC--LEDAGVAFDRLVNRDIFSW 322

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
             +I G +Q     +A+  F  M +  ++ ++++LAS +S C+++++LE G Q+ A    
Sbjct: 323 TVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVK 382

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDE 491
            G   D  + ++LVD Y KCG ++  E
Sbjct: 383 AGHFGDIFVGSALVDLYGKCGCMEHAE 409



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/507 (23%), Positives = 208/507 (41%), Gaps = 119/507 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ L+ +      +  G+ +H    K G  +  L ++N L+ MYM+     D   +F+ M
Sbjct: 155 LSSLVSTATNMGDLRYGQSIHGCICKYGFESDNL-VSNPLIMMYMKSRCVEDGNKVFEAM 213

Query: 68  PRRNCFSWNAMIEGF----------------MKLGHKEKSLQLFNVM--------PQ--- 100
              +  SWNA++ GF                +  G K       +V+        P+   
Sbjct: 214 TNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGK 273

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        +DF    L+  +AKA  L+ A   F+ +  R+  +W  +I  Y +  
Sbjct: 274 QVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTD 333

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A +AV+ F+++     E ++ + + LA+ +  C+ +A LE G+Q+H+  +  G   D  
Sbjct: 334 QAEKAVKYFRQMQR---EGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIF 390

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+LV+LYGK                               CG M  A  +F       
Sbjct: 391 VGSALVDLYGK-------------------------------CGCMEHAEAIFKGLISRD 419

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN++ISGY  + +  +AL  F  M   G++ D +T   VLSACS +G +E GK+   
Sbjct: 420 IVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFD 479

Query: 329 HACKVGVIDDVIVASA-LLDTYSKRGMPSD----------------------ACKL---- 361
              K+  I+  I   A ++D   + G  ++                      ACKL    
Sbjct: 480 SMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNV 539

Query: 362 -FSELKVYDTILLNTMI--------TVYSSCGRIEDAKHIFRTMPNKSL-----ISW--- 404
            F E        +  M+         +++S GR +D ++I   M ++ +      SW   
Sbjct: 540 DFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEV 599

Query: 405 -NSMIVGLSQNGSPIEALDLFCNMNKL 430
              + V LSQ+GS  +  +++  ++KL
Sbjct: 600 DGQVHVFLSQDGSHPKIREIYAKLDKL 626


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 199/400 (49%), Gaps = 41/400 (10%)

Query: 93  QLFNVMP--QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           +LF+  P  ++++ +W  +I+G+ +  +L  AR L   M    A+AWN+MI  YV  GF 
Sbjct: 196 KLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFY 255

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD----FD 206
            EA  L + ++S     +Q D +   +VI A ++      G+Q+H+++L   +     F 
Sbjct: 256 EEAFDLLRRMHS---LGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV 312

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + ++L+ LY +CG    A +V + M   D    +A++SG  N  ++ +A  +F     
Sbjct: 313 LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPV 372

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            S + W  MISG   N    E L LF++M+  G+       A  +++CS LG L++G+Q+
Sbjct: 373 RSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQL 432

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    ++G    + V +AL                               IT+YS CG +
Sbjct: 433 HSQIIQLGHDSSLSVGNAL-------------------------------ITMYSRCGLV 461

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           E A  +F TMP    +SWN+MI  L+Q+G  ++A+ L+  M K D+  D+ +  +++SAC
Sbjct: 462 EAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSAC 521

Query: 447 ANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG 485
           ++   ++ G   F  + +  G+  ++   + L+D  C+ G
Sbjct: 522 SHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAG 561



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/503 (28%), Positives = 242/503 (48%), Gaps = 66/503 (13%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           YLA+L     +H S    + +H H L  G     L I NRL+  Y +  N   A  LFD+
Sbjct: 5   YLAQL-----SHTSF--ARAVHAHILTSGFKPFPL-IINRLIDHYCKSFNIPYARYLFDK 56

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +P+ +  +   M+                               S ++ AG +K A  LF
Sbjct: 57  IPKPDIVAATTML-------------------------------SAYSAAGNIKLAHQLF 85

Query: 127 NDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ--CDAFILATVIGAC 182
           N  P   R+ +++N+MI  +  +     A++LF ++     +RL    D F  ++V+GA 
Sbjct: 86  NATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQM-----KRLGFVPDPFTFSSVLGAL 140

Query: 183 ADLAALE-YGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMM------- 233
           + +A  E + +Q+H  +   G L   SVL ++L++ Y  C      N  + M        
Sbjct: 141 SLIADEETHCQQLHCEVFKWGALSVPSVL-NALMSCYVSCASSPLVNSCVLMAAARKLFD 199

Query: 234 KEP----DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
           + P    D+   + +I+GY     +  AR + +  TD  +V WN+MISGY+      EA 
Sbjct: 200 EAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAF 259

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD----VIVASAL 345
            L  +M   G+  D  T  SV+SA S+ G    G+QVH +  +  V       + V +AL
Sbjct: 260 DLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNAL 319

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y++ G   +A ++F ++ V D +  N +++   +  RIE+A  IFR MP +SL++W 
Sbjct: 320 ITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWT 379

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
            MI GL+QNG   E L LF  M    L    ++ A  I++C+ + SL+ G+Q+ +++  +
Sbjct: 380 VMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQL 439

Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
           G DS   +  +L+  Y +CG ++
Sbjct: 440 GHDSSLSVGNALITMYSRCGLVE 462



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 22/242 (9%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + SC+   S+  G+QLH   ++ G  +S+L + N L+ MY RCG    A  +F
Sbjct: 410 DYAYAGAIASCSVLGSLDNGQQLHSQIIQLG-HDSSLSVGNALITMYSRCGLVEAADTVF 468

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKAGE 118
             MP  +  SWNAMI    + GH  +++QL+      +++P +  F    ++S  + AG 
Sbjct: 469 LTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFL--TILSACSHAGL 526

Query: 119 LKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           +K  R  F+ M     I      ++ +I    R G   EA  + + +        +  A 
Sbjct: 527 VKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMP------FEPGAP 580

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           I   ++  C     +E G Q    +L      D     SL N+Y   G ++   +V  +M
Sbjct: 581 IWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTY-ISLSNMYAALGQWDEVARVRKLM 639

Query: 234 KE 235
           +E
Sbjct: 640 RE 641


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 198/437 (45%), Gaps = 54/437 (12%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110
           + R G    A  +FDEM  RN F+WN MI G ++ G    +  +F+ MP +N  SW  L+
Sbjct: 3   HFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALL 62

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           +G+A+ G +  AR LF+ MP R+ ++WN+MI  Y+ NG    A  LF  + +      + 
Sbjct: 63  TGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPA------RN 116

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D   L  + G        E        I        + + ++L++ Y + G    A  + 
Sbjct: 117 DVSWLMMISGYMKRKRVRE-----AREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLF 171

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
             M+ PD    +A+I+GY   G M  A+R+FD   +  +V W +++ GY+ N +   A  
Sbjct: 172 GRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWK 231

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +F  M    VL   + ++         GF                     V S  LD   
Sbjct: 232 VFQDMPDRDVLAWNTMMS---------GF---------------------VVSERLD--- 258

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                 DA +LF+++   D +  NT++  Y   G ++ A   FR MP K   SWN++I G
Sbjct: 259 ------DALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISG 312

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
               G    AL+L   M +   R D+ + +  IS C+++++L  G  V       G + D
Sbjct: 313 YKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERD 368

Query: 471 QIISTSLVDFYCKCGFI 487
            ++ +SL+  Y KCG I
Sbjct: 369 ALVMSSLISMYSKCGLI 385



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 205/455 (45%), Gaps = 77/455 (16%)

Query: 34  KGILNSTLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
           +G+ + T+P  N      LL  Y RCG   +A  LFD MP R+  SWNAMI G++  G  
Sbjct: 44  RGVFD-TMPFRNSVSWAALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMV 102

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           +++  LF+VMP +ND SW M+ISG+ K   ++ AR +F+  P       N+++  Y  +G
Sbjct: 103 DRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHG 162

Query: 149 FAREAVRLFKELNS-DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           + ++A  LF  + + DLV     +A I                  Q+   +     + D+
Sbjct: 163 YLKDAEDLFGRMQTPDLVS---WNAMITGYTRAGMM---------QVAQRLFDEMPEKDT 210

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           V  +++V  Y + GD ++A +V   M + D    + ++SG+    +++DA R+F    D 
Sbjct: 211 VSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLFADMPDR 270

Query: 268 SSVMWNSMISGY---------------------------ISNNEDTEALLLFHKMRRNGV 300
             V WN+++ GY                           IS  +D  AL L  +M + G 
Sbjct: 271 DLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGYKDEGALNLLSEMTQGGY 330

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D +T +  +S CSSL  L  G+ VH    K G   D +V S+L+  YSK G+ ++A +
Sbjct: 331 RPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQ 390

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F  +   DT+  N MI  Y                               + +G   EA
Sbjct: 391 VFDLIVQRDTVTWNAMIATY-------------------------------AYHGLAAEA 419

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           L LF  M K     D  +  SV+SACA+   L  G
Sbjct: 420 LTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEG 454



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 169/366 (46%), Gaps = 25/366 (6%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y R G    A  LFDEMP ++  SW A++ G+++ G  + + ++F  MP ++  
Sbjct: 183 NAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVL 242

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN ++SGF  +  L  A  LF DMP R+ ++WN+++  YV+ G    A   F+++    
Sbjct: 243 AWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMP--- 299

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
               + D     T+I    D  AL     + S +   G   D    S  +++        
Sbjct: 300 ----EKDEASWNTLISGYKDEGAL----NLLSEMTQGGYRPDQATWSVAISICSSLAALG 351

Query: 225 SANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
               V    +    E D   +S+LIS Y+ CG + +A +VFD      +V WN+MI+ Y 
Sbjct: 352 CGRMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYA 411

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDV 339
            +    EAL LF +M ++G   D +T  SVLSAC+  G+L  G            +I   
Sbjct: 412 YHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRS 471

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED-------AKHI 392
              S ++D   + G    A       ++   + +N   T++SSC    D       AK++
Sbjct: 472 DHYSCMVDLLGRSGFVHQAYNF--TRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNV 529

Query: 393 FRTMPN 398
            ++ P+
Sbjct: 530 LQSRPS 535



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 116/233 (49%), Gaps = 23/233 (9%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C++  ++  G+ +H+  +K G     L + + L+ MY +CG  T+A  +FD + +R+  +
Sbjct: 344 CSSLAALGCGRMVHVCTIKTGFERDAL-VMSSLISMYSKCGLITEASQVFDLIVQRDTVT 402

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-----MLISGFAKAGEL-------KTA 122
           WNAMI  +   G   ++L LF+ M  K+ FS +      ++S  A  G L       ++ 
Sbjct: 403 WNAMIATYAYHGLAAEALTLFDRM-TKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSM 461

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           +  +N +PR +   ++ M+    R+GF  +A    + + SDL    Q +A+   T+  +C
Sbjct: 462 QQDWNLIPRSDH--YSCMVDLLGRSGFVHQAYNFTRRIPSDL----QINAW--ETLFSSC 513

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                ++ G+ +  ++L      D  + + L N+Y   G ++SA  V  +MKE
Sbjct: 514 NAHGDIQLGELVAKNVL-QSRPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKE 565


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 229/498 (45%), Gaps = 78/498 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-E 66
           ++R L S  T   +H   +LH   +  G+ +S +  + +L+  Y    +PT +  +F   
Sbjct: 19  ISRALASAATTTQLH---KLHSLIITLGLHHSVI-FSAKLIAKYAHFRDPTSSFSVFRLA 74

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSW---------------- 106
            P  N + WN++I      G   ++L L++    +  Q + +++                
Sbjct: 75  SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 134

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N LI  + +  +L  AR +F +MP R+ ++WNS+I  Y  N
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 148 GFAREAVRLFKE---LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           G+  EA+ ++ +   L  ++V + + D   + +++ AC  L  LE+GK +H +++ +G +
Sbjct: 195 GYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 254

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+   + L+N+Y KCG+  ++ +V + MK  D    +++I+ Y   GKM D+ +VF+  
Sbjct: 255 CDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENM 314

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                + WN++I+  + + +    L +  +MR  GV  D +T+ S+L  CS L     GK
Sbjct: 315 KARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGK 374

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++HG   K+G+  DV V                                N +I +YS CG
Sbjct: 375 EIHGCIFKLGLESDVPVG-------------------------------NVLIEMYSKCG 403

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            + ++  +F+ M  K +++W ++I      G   +A+  F  M    +  D  +  ++I 
Sbjct: 404 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 463

Query: 445 ACANISSLELGEQVFARV 462
           AC++   +E G   F R+
Sbjct: 464 ACSHSGLVEEGLNYFHRM 481



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 182/381 (47%), Gaps = 29/381 (7%)

Query: 109 LISGFAKAGELKTARTLFN-DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
           LI+ +A   +  ++ ++F    P  N   WNS+I     NG   EA+ L+ E       R
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRI---R 110

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           LQ D +   +VI ACA L   E  K IH  +L  G   D  +G++L+++Y +  D + A 
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKAR 170

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           +V   M   D    ++LISGY   G  N+A  ++                         +
Sbjct: 171 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIY------------------------YQ 206

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           ++ LF +M  N    D  T+ S+L AC  LG LE GK VH +    G   D   ++ L++
Sbjct: 207 SIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 265

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y+K G    + ++FS +K  D++  N+MI VY   G++ D+  +F  M  + +I+WN++
Sbjct: 266 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTI 325

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I     +      L +   M    +  D  ++ S++  C+ +++   G+++   +  +GL
Sbjct: 326 IASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 385

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
           +SD  +   L++ Y KCG ++
Sbjct: 386 ESDVPVGNVLIEMYSKCGSLR 406


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 203/413 (49%), Gaps = 35/413 (8%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G    ALL+   +      S N ++  +  L     SL  F+ +P KN  S+N L++ 
Sbjct: 46  RLGAAVHALLVKTALTHHTLLS-NRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAA 104

Query: 113 FAKA-GELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL---VE 166
            A+  G L  A  L + MP   RN +++N++I    R+G   EA+R+F +L  D     +
Sbjct: 105 LARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQ 164

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           ++  D F + +   ACA L    + +++H  ++V+G++   ++ +++V+ Y K G    A
Sbjct: 165 QVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDA 224

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             + + M   D    +++I+GY     ++DA +VFD      ++ W ++ISG+  N E+ 
Sbjct: 225 RGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEE 284

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            AL LF +M   GV+     L S L AC+ +G +  GK+VHG   +              
Sbjct: 285 IALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILR-------------- 330

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                R + SD   +F         + N +I +YS CG +  A  +F  M  + +ISWNS
Sbjct: 331 -----RSIGSDPFNVF---------IHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNS 376

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           M+ G S NG   ++L +F  M K +++    +  +V++AC++   +  G ++ 
Sbjct: 377 MVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRIL 429



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 187/383 (48%), Gaps = 41/383 (10%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G  +H   +K  + + TL ++NRL+ +Y     P  +L  FD++P +N  S+N+++   
Sbjct: 47  LGAAVHALLVKTALTHHTL-LSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAAL 105

Query: 83  MK-LGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            +  G    +L+L + MP   +N  S+N +IS  A                         
Sbjct: 106 ARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLA------------------------- 140

Query: 140 MIHCYVRNGFAREAVRLFKELNSDL---VERLQCDAFILATVIGACADLAALEYGKQIHS 196
                 R+G   EA+R+F +L  D     +++  D F + +   ACA L    + +++H 
Sbjct: 141 ------RHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHG 194

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            ++V+G++   ++ +++V+ Y K G    A  + + M   D    +++I+GY     ++D
Sbjct: 195 AVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDD 254

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A +VFD      ++ W ++ISG+  N E+  AL LF +M   GV+     L S L AC+ 
Sbjct: 255 AVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAK 314

Query: 317 LGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           +G +  GK+VHG   +  +  D   V + +AL+D YSK G    A  +F  +   D I  
Sbjct: 315 VGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISW 374

Query: 374 NTMITVYSSCGRIEDAKHIFRTM 396
           N+M+T +S  G+ + +  +F  M
Sbjct: 375 NSMVTGFSHNGQGKQSLAVFERM 397



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 12/307 (3%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  +H+ ++   L   ++L + LV LY       ++    + +   +    ++L++  A 
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 251 C-GKMNDARRVFDRTTDTSS--VMWNSMISGYISNNEDTEALLLFHKMRRN------GVL 301
             G + DA R+ D     S   V +N++IS    +  ++EAL +F ++ R+       V 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T+ S  SAC+ L    H +++HG     G+   VI+A+A++D YSK G   DA  L
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGL 227

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F ++ + D++   +MI  Y     ++DA  +F  MP +  I+W ++I G  QNG    AL
Sbjct: 228 FDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIAL 287

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ---IISTSLV 478
           +LF  M    +    F+L S + ACA +  +  G++V   +    + SD     I  +L+
Sbjct: 288 ELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALI 347

Query: 479 DFYCKCG 485
           D Y KCG
Sbjct: 348 DMYSKCG 354



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 173/388 (44%), Gaps = 47/388 (12%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           ++LH   +  G +  T+ +AN ++  Y + G   DA  LFD+M  R+  SW +MI G+ +
Sbjct: 190 RELHGAVVVSG-MEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCR 248

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
               + ++Q+F++MP ++  +W  LISG  + GE + A  LF  M     +         
Sbjct: 249 ASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVP-------- 300

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL- 203
                                       F L + +GACA +  +  GK++H  IL   + 
Sbjct: 301 --------------------------TPFALVSCLGACAKVGLVARGKEVHGFILRRSIG 334

Query: 204 --DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
              F+  + ++L+++Y KCGD  +A  V + M E D    +++++G+++ G+   +  VF
Sbjct: 335 SDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVF 394

Query: 262 DR----TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           +R        + V + ++++        ++   +   M+ +GV   A   A+ + A    
Sbjct: 395 ERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALGRN 454

Query: 318 GFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILL 373
             LE   + + G + K+G +       ALL      G   +  +  +   +L+  ++   
Sbjct: 455 HQLEEASEFIKGLSSKIG-LGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRY 513

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSL 401
             +  +YS+ G+ +DA+ +   M  K L
Sbjct: 514 VMLSNIYSAAGQWDDARQVRALMKGKGL 541



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 18/235 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFDEMPR 69
           L +C     +  GK++H   L++ I +      I N L+ MY +CG+   A+ +FD M  
Sbjct: 309 LGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLE 368

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTL 125
           R+  SWN+M+ GF   G  ++SL +F  M     Q    ++  +++  + AG +   R +
Sbjct: 369 RDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRI 428

Query: 126 FNDM------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
              M      PR  A  + + I    RN    EA    K L+S +             ++
Sbjct: 429 LESMQDHGVEPR--AEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGS---WGALL 483

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           GAC     +E  +++ +  L      +S     L N+Y   G ++ A QV  +MK
Sbjct: 484 GACHVHGNIEIAEEV-AEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRALMK 537



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G  VH    K  +    ++++ L+  Y+    P+ +   F +L   +    N+++   + 
Sbjct: 48  GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALAR 107

Query: 383 C-GRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNM------NKLDLR 433
             G + DA  +   MP  +++++S+N++I  L+++G   EAL +F  +       +  + 
Sbjct: 108 GRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVA 167

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +D+F++ S  SACA +       ++   V + G++   I++ ++VD Y K G ++
Sbjct: 168 IDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVE 222


>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 480

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 170/342 (49%), Gaps = 34/342 (9%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A  +F+ +   +   WN MI  Y  NG +++A+ L+   N  + E    D F    VI A
Sbjct: 83  ATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLY---NLMICEGFSPDKFTFPFVIKA 139

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C D +AL+ GK++H   +  G   D+ L ++L++LY KCGD + A ++ + M        
Sbjct: 140 CLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSW 199

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           +  ++G   CG+++ AR  FD     + V W +MI+GY+ N    EA  LF +M+   V 
Sbjct: 200 TTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVR 259

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +  TL  +L AC+ LG LE G+++H +A + G    V + +AL+D YSK G   DA K+
Sbjct: 260 PNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKV 319

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F E                               M  KSL +WNSMI  L  +G   EAL
Sbjct: 320 FEE-------------------------------MQKKSLATWNSMITSLGVHGFGKEAL 348

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
            LF  M + ++R D  +   V+ AC N +++E G + F  +T
Sbjct: 349 ALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMT 390



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 123/236 (52%)

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
           K++ A  +FD+  +  +  WN MI  Y  N    +ALLL++ M   G   D  T   V+ 
Sbjct: 79  KVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIK 138

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC     L+ GK+VHG A K G   D  +++ L+D Y K G    A KLF ++ V   + 
Sbjct: 139 ACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVS 198

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
             T +    +CG ++ A+  F  MP ++++SW +MI G  +N  P EA +LF  M   ++
Sbjct: 199 WTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANV 258

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           R + F+L  ++ AC  + SLELG ++       G      + T+L+D Y KCG I+
Sbjct: 259 RPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIE 314



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 165/358 (46%), Gaps = 67/358 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C  H ++  GK++H   +K G    T  ++N L+ +Y +CG+              
Sbjct: 136 VIKACLDHSALDKGKEVHGFAIKTGFWKDTF-LSNTLMDLYFKCGD-------------- 180

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                         L +  K   LF+ M  ++  SW   ++G    GEL TAR  F++MP
Sbjct: 181 --------------LDYARK---LFDKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMP 223

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            RN ++W +MI+ YV+N   +EA  LF+ +    +  ++ + F L  ++ AC +L +LE 
Sbjct: 224 MRNVVSWTAMINGYVKNQRPQEAFELFQRMQ---LANVRPNGFTLVGLLRACTELGSLEL 280

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++IH + L NG      LG++L+++Y KCG                             
Sbjct: 281 GRRIHEYALENGFKVGVFLGTALIDMYSKCGS---------------------------- 312

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
              + DA++VF+     S   WNSMI+    +    EAL LF +M    V  DA T   V
Sbjct: 313 ---IEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGV 369

Query: 311 LSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           L AC +   +E G +   +  +  G+   +   + +++ Y++  M ++  +L + + +
Sbjct: 370 LFACVNTNNVEAGYRYFKYMTEHYGITPMLEHYTCMIELYTRAAMLNEVSELVNSMPM 427



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL++C    S+ +G+++H + L+ G       +   L+ MY +CG+  DA  +F+EM
Sbjct: 265 LVGLLRACTELGSLELGRRIHEYALENGFKVGVF-LGTALIDMYSKCGSIEDAKKVFEEM 323

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
            +++  +WN+MI      G  +++L LF  M + N
Sbjct: 324 QKKSLATWNSMITSLGVHGFGKEALALFAQMEEAN 358


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 145/521 (27%), Positives = 236/521 (45%), Gaps = 106/521 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PR 69
            L+ C    S  +G  +H    +  +   ++ + N L+ +Y +CG    A  +F  M   
Sbjct: 72  FLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL-NSLISLYSKCGQWEKATSIFQLMGSS 130

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNM----------------- 108
           R+  SW+AM+  F       ++L  F  M +     N++ +                   
Sbjct: 131 RDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSI 190

Query: 109 -------------------LISGFAKA-GELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                              LI  F K  G+L +A  +F  MP RNA+ W  MI   ++ G
Sbjct: 191 FGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFG 250

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +A EA+ LF E+   ++   + D F L+ VI ACA++  L  G+Q+HS  + +GL  D  
Sbjct: 251 YAGEAIDLFLEM---ILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRC 307

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G  L+N+Y KC                            +  G M  AR++FD+  D +
Sbjct: 308 VGCCLINMYAKC----------------------------SVDGSMCAARKIFDQILDHN 339

Query: 269 SVMWNSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
              W +MI+GY+     D EAL LF  M    V+ +  T +S L AC++L  L  G+QV 
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            HA K+G                           FS +      + N++I++Y+  GRI+
Sbjct: 400 THAVKLG---------------------------FSSVNC----VANSLISMYARSGRID 428

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA+  F  +  K+LIS+N++I   ++N +  EAL+LF  +    +    F+ AS++S  A
Sbjct: 429 DARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAA 488

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +I ++  GEQ+ ARV   GL  +Q +  +L+  Y +CG I+
Sbjct: 489 SIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIE 529



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 226/496 (45%), Gaps = 109/496 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC-GNPTDALLLFDE 66
            A   ++C+T   + VG  +    +K G L S + +   L+ M+++  G+   A  +F++
Sbjct: 171 FAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSW------NM------ 108
           MP RN  +W  MI   M+ G+  +++ LF  M      P +   S       NM      
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLG 290

Query: 109 ---------------------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                LI+ +AK    G +  AR +F+ +   N  +W +MI  Y
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 145 V-RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           V + G+  EA+ LF+ +   ++  +  + F  ++ + ACA+LAAL  G+Q+ +H +  G 
Sbjct: 351 VQKGGYDEEALDLFRGM---ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGF 407

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
              + + +SL+++Y + G                               +++DAR+ FD 
Sbjct: 408 SSVNCVANSLISMYARSG-------------------------------RIDDARKAFDI 436

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + + +N++I  Y  N    EAL LF+++   G+   A T AS+LS  +S+G +  G
Sbjct: 437 LFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG 496

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +Q+H    K G+  +  V +AL+  YS+                               C
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSR-------------------------------C 525

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G IE A  +F  M ++++ISW S+I G +++G   +AL+LF  M +  +R +  +  +V+
Sbjct: 526 GNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVL 585

Query: 444 SACANISSLELGEQVF 459
           SAC+++  +  G + F
Sbjct: 586 SACSHVGLVNEGWKHF 601



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 195/429 (45%), Gaps = 80/429 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
           L+ ++ +C     + +G+QLH   ++ G L     +   L+ MY +C   G+   A  +F
Sbjct: 274 LSGVISACANMELLLLGQQLHSQAIRHG-LTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 65  DEMPRRNCFSWNAMIEGFM-KLGHKEKSLQLF------NVMPQKNDFS------------ 105
           D++   N FSW AMI G++ K G+ E++L LF      +V+P    FS            
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392

Query: 106 ---------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LIS +A++G +  AR  F+ +  +N I++N++I  Y
Sbjct: 393 RIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAY 452

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            +N  + EA+ LF E+     + +   AF  A+++   A +  +  G+QIH+ ++ +GL 
Sbjct: 453 AKNLNSEEALELFNEIED---QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLK 509

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
               L  S+ N                           ALIS Y+ CG +  A +VF+  
Sbjct: 510 ----LNQSVCN---------------------------ALISMYSRCGNIESAFQVFEDM 538

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG- 323
            D + + W S+I+G+  +   T+AL LFHKM   GV  +  T  +VLSACS +G +  G 
Sbjct: 539 EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGW 598

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSS 382
           K       + GVI  +   + ++D   + G  S+A +  + +    D ++  T +     
Sbjct: 599 KHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRV 658

Query: 383 CGRIEDAKH 391
            G +E  KH
Sbjct: 659 HGNLELGKH 667



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 19/240 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A LL    +  +I  G+Q+H   +K G+ LN +  + N L+ MY RCGN   A  +F++
Sbjct: 480 FASLLSGAASIGTIGKGEQIHARVIKSGLKLNQS--VCNALISMYSRCGNIESAFQVFED 537

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTA 122
           M  RN  SW ++I GF K G   ++L+LF+ M ++    N  ++  ++S  +  G +   
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
              F  M   + +      +  M+    R+G   EA++    +        + DA +  T
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMP------YKADALVWRT 651

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
            +GAC     LE GK   + +++     D      L NLY     ++  + +   MKE +
Sbjct: 652 FLGACRVHGNLELGKHA-AKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKN 710


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 232/518 (44%), Gaps = 106/518 (20%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             A +  SC       +G Q+  H ++ G  +S + +AN L+ M+    +  +A  +FD M
Sbjct: 950  FATVTSSCGLLEDQVLGYQVLGHIIQYGFEDS-VSVANSLISMFSSFSSVEEACYVFDHM 1008

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------KNDFSW-- 106
               +  SWNAMI  +   G   +SL+ F+ M                      ++  W  
Sbjct: 1009 NECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR 1068

Query: 107  ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                              N L++ +++AG  + A  +F  M  R+ I+WNSM+ CYV++G
Sbjct: 1069 GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDG 1128

Query: 149  FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               + +++  EL   L      +    A+ + AC++   L   K +H+ I+V G     +
Sbjct: 1129 KCLDGLKILAEL---LQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLI 1185

Query: 209  LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            +G++LV +YGK G          MM E                     A++V        
Sbjct: 1186 VGNALVTMYGKLG----------MMME---------------------AKKVLQTMPQPD 1214

Query: 269  SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVH 327
             V WN++I G+  N E  EA+  +  +R  G+  +  T+ SVL ACS+    L+HG  +H
Sbjct: 1215 RVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIH 1274

Query: 328  GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             H         +++     D Y K                      N++IT+Y+ CG + 
Sbjct: 1275 AH---------IVLTGFESDDYVK----------------------NSLITMYAKCGDLN 1303

Query: 388  DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
             + +IF  + NKS I+WN+M+   + +G   EAL +F  M  + + +D+FS +  ++A A
Sbjct: 1304 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 1363

Query: 448  NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            N++ LE G+Q+   V  +G +SD  ++ + +D Y KCG
Sbjct: 1364 NLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 1401



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 204/465 (43%), Gaps = 110/465 (23%)

Query: 24   GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            G+ +H   +K G L+S + I N LL +Y   G   DA L+F  M  R+  SWN+M+  ++
Sbjct: 1067 GRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV 1125

Query: 84   KLGH-------KEKSLQLFNVM--------------PQ----------------KNDF-- 104
            + G          + LQ+  VM              P+                 +DF  
Sbjct: 1126 QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLI 1185

Query: 105  SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
              N L++ + K G +  A+ +   MP+ + + WN++I  +  N    EAV+ +K +    
Sbjct: 1186 VGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE-- 1243

Query: 165  VERLQCDAFILATVIGACA---DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
             + +  +   + +V+GAC+   DL  L++G  IH+HI++ G                   
Sbjct: 1244 -KGIPANYITMVSVLGACSAPDDL--LKHGMPIHAHIVLTGF------------------ 1282

Query: 222  DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                         E DD+  ++LI+ YA CG +N +  +FD   + S + WN+M++    
Sbjct: 1283 -------------ESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 1329

Query: 282  NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
            +    EAL +F +MR  GV  D  + +  L+A ++L  LE G+Q+HG   K+G   D+ V
Sbjct: 1330 HGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHV 1389

Query: 342  ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
             +A +D Y K                               CG + D   +     N+S 
Sbjct: 1390 TNAAMDMYGK-------------------------------CGEMHDVLKMLPQPINRSR 1418

Query: 402  ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            +SWN +I   +++G   +A + F  M KL  + D  +  S++SAC
Sbjct: 1419 LSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSAC 1463



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 216/487 (44%), Gaps = 109/487 (22%)

Query: 76   NAMIEGFMKLGHK--EKSLQLFNVMPQKN--DFSWNMLISGFAKAGELKTARTLFNDMPR 131
            N  ++GF ++  +   K+L  F ++   N   F  N LI+ ++K G ++ AR +F++M  
Sbjct: 748  NFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRH 807

Query: 132  RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL-EY 190
            RN  +W++M+  YVR G   EAV LF ++    VE    + F++A++I AC+    + + 
Sbjct: 808  RNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP---NGFMVASLITACSRSGYMADE 864

Query: 191  GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            G Q+H  ++  G+  D  +G++LV+ YG                               +
Sbjct: 865  GFQVHGFVVKTGILGDVYVGTALVHFYG-------------------------------S 893

Query: 251  CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
             G + +A+++F+   D + V W S++ GY  +    E L ++ +MR+ GV  + +T A+V
Sbjct: 894  IGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATV 953

Query: 311  LSACSSLGFLEHGKQVHGHACKVGVID-------------------------------DV 339
             S+C  L     G QV GH  + G  D                               D+
Sbjct: 954  TSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDI 1013

Query: 340  IVASALLDTYSKRGMPSDACKLFSELKVY------------------------------- 368
            I  +A++  Y+  G+  ++ + F  ++                                 
Sbjct: 1014 ISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGL 1073

Query: 369  --------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                    +  + NT++T+YS  GR EDA+ +F+ M  + LISWNSM+    Q+G  ++ 
Sbjct: 1074 VVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDG 1133

Query: 421  LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
            L +   + ++   M+  + AS ++AC+N   L   + V A + + G     I+  +LV  
Sbjct: 1134 LKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 1193

Query: 481  YCKCGFI 487
            Y K G +
Sbjct: 1194 YGKLGMM 1200



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 210/478 (43%), Gaps = 82/478 (17%)

Query: 3   TRID---YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           TR+D   YL ++LQ C    +   G  +H H +  G   S L +  +L+  Y++ G+   
Sbjct: 26  TRLDPSLYL-KILQLCIDKKAKKQGHLIHTHLITNG-FGSDLHLNTKLIIFYVKVGDVIA 83

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-------------------- 99
           A  +FD MP R+  SW AM+ G+ + G  EK+  LF+ M                     
Sbjct: 84  ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTS 143

Query: 100 --------------QKNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                         QK  F  N+     L+   +K G+++ A  LF  M  R+ ++WN+M
Sbjct: 144 LRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 203

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  Y   GFA ++  +F+ +   L   L  D + L +V+ A A+   L    QIH  I  
Sbjct: 204 IGGYAVQGFADDSFCMFRSM---LRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQ 260

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            G     ++   L+N Y K G   SA  +   M + D F  +ALI+GYA+ G  +     
Sbjct: 261 LGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYS----- 315

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
                                     +AL LF +M +  +  D   L S+L+ C++L   
Sbjct: 316 -------------------------VDALDLFKEMNQMNIGMDDVILCSMLNICANLASF 350

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             G Q+H  A K     DV + +AL+D Y+K G   DA + F E++  + I   ++I+ Y
Sbjct: 351 ALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGY 410

Query: 381 SSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLR 433
           +  G    A  +++ M +K      +++ S++   S  G   E  + F NM NK +++
Sbjct: 411 AKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIK 468



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 169/381 (44%), Gaps = 66/381 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  + K G++  AR +F+ MP R+ ++W +M+  Y +NG   +A  LF ++    V+  
Sbjct: 71  LIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKAN 130

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           Q   F   + + AC  L  L+ G Q+   I                    + G F     
Sbjct: 131 Q---FTYGSALRACTSLRCLDMGIQVQGCI--------------------QKGRF----- 162

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V N+      F  SAL+  ++ CGKM DA  +F    +   V WN+MI GY       ++
Sbjct: 163 VENL------FVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDS 216

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             +F  M R G++ D  TL SVL A +  G L    Q+HG   ++G     IV   L++ 
Sbjct: 217 FCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINA 276

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K                                G +  AK + + M  K L S  ++I
Sbjct: 277 YAKN-------------------------------GSLRSAKDLRKGMLKKDLFSSTALI 305

Query: 409 VGLSQNG-SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
            G +  G   ++ALDLF  MN++++ MD   L S+++ CAN++S  LG Q+ A       
Sbjct: 306 TGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQP 365

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
             D  +  +L+D Y K G I+
Sbjct: 366 SYDVAMGNALIDMYAKSGEIE 386



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 219/526 (41%), Gaps = 107/526 (20%)

Query: 8    LARLLQSCN-THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            +A L+ +C+ + +    G Q+H   +K GIL     +   L+  Y   G   +A  LF+E
Sbjct: 848  VASLITACSRSGYMADEGFQVHGFVVKTGILGDVY-VGTALVHFYGSIGLVYNAQKLFEE 906

Query: 67   MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSW-------------- 106
            MP  N  SW +++ G+   G+  + L ++  M Q      +N F+               
Sbjct: 907  MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLG 966

Query: 107  -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                               N LIS F+    ++ A  +F+ M   + I+WN+MI  Y  +
Sbjct: 967  YQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHH 1026

Query: 148  GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
            G  RE++R F  +   L              + +  D   L++G+ IH  ++  GLD + 
Sbjct: 1027 GLCRESLRCFHWMR-HLHNETNSTTLSSLLSVCSSVD--NLKWGRGIHGLVVKLGLDSNV 1083

Query: 208  VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
             + ++L+ LY                               +  G+  DA  VF   T+ 
Sbjct: 1084 CICNTLLTLY-------------------------------SEAGRSEDAELVFQAMTER 1112

Query: 268  SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
              + WNSM++ Y+ + +  + L +  ++ + G + +  T AS L+ACS+   L   K VH
Sbjct: 1113 DLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVH 1172

Query: 328  GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
                  G  D +IV +AL                               +T+Y   G + 
Sbjct: 1173 ALIIVAGFHDFLIVGNAL-------------------------------VTMYGKLGMMM 1201

Query: 388  DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            +AK + +TMP    ++WN++I G ++N  P EA+  +  + +  +  +  ++ SV+ AC+
Sbjct: 1202 EAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261

Query: 448  NISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
                L + G  + A + + G +SD  +  SL+  Y KCG +    Y
Sbjct: 1262 APDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNY 1307



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 186/437 (42%), Gaps = 83/437 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C +   + +G Q+    ++KG     L + + L+  + +CG   DA  LF  M  R+
Sbjct: 138 LRACTSLRCLDMGIQVQ-GCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERD 196

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----------------------------- 102
             SWNAMI G+   G  + S  +F  M +                               
Sbjct: 197 VVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHG 256

Query: 103 ----------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG-FAR 151
                     D    +LI+ +AK G L++A+ L   M +++  +  ++I  Y   G ++ 
Sbjct: 257 IITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSV 316

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LFKE+N      +  D  IL +++  CA+LA+   G QIH+  L     +D  +G+
Sbjct: 317 DALDLFKEMNQ---MNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGN 373

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y K                                G++ DA+R FD   + + + 
Sbjct: 374 ALIDMYAKS-------------------------------GEIEDAKRAFDEMEEKNVIS 402

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+ISGY  +     A+ L+ KM   G   +  T  S+L ACS  G    G +   +  
Sbjct: 403 WTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMV 462

Query: 332 -KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV------YDTILLNTMITVYSSCG 384
            K  +       S ++D ++++G+  +A  L  ++ +      +  IL  + I  Y S G
Sbjct: 463 NKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLG 522

Query: 385 RIEDAKHIFRTMPNKSL 401
           + E A ++F   P  S+
Sbjct: 523 K-EAASNLFNMQPENSV 538



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 134/318 (42%), Gaps = 62/318 (19%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D  +   ++  C D  A + G  IH+H++ NG   D  L + L+  Y K GD  +A    
Sbjct: 29  DPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAA---- 84

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                                      R VFD   + S V W +M+SGY  N    +A +
Sbjct: 85  ---------------------------RNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFV 117

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF  MR  GV  +  T  S L AC+SL  L+ G QV G   K   ++++ V SAL+D +S
Sbjct: 118 LFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHS 177

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G   DA  LF  +   D +  N MI  Y+  G  +D+  +FR+M    L+        
Sbjct: 178 KCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP------- 230

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
                                   D ++L SV+ A A    L +  Q+   +T +G  S 
Sbjct: 231 ------------------------DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSY 266

Query: 471 QIISTSLVDFYCKCGFIK 488
            I++  L++ Y K G ++
Sbjct: 267 DIVTGLLINAYAKNGSLR 284



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 373 LNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           LNT +I  Y   G +  A+++F  MP +S++SW +M+ G SQNG   +A  LF +M    
Sbjct: 67  LNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCG 126

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++ ++F+  S + AC ++  L++G QV   +       +  + ++LVDF+ KCG ++ D 
Sbjct: 127 VKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKME-DA 185

Query: 492 YYL 494
            YL
Sbjct: 186 SYL 188


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 235/516 (45%), Gaps = 106/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H   +  GI +    +  +L+ MY+ CG+      +FD++   
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGI-SVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 158

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
             F WN ++  + K+G+  +S+ LF  M +                              
Sbjct: 159 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 218

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     N    N LI+ + K G +++A  LF+++   + ++WNSMI+  V NGF+ 
Sbjct: 219 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 278

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             + +F ++   L+  ++ D   L +V+ ACA++  L  G+ +H   +      + V  +
Sbjct: 279 NGLEIFIQM---LILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSN 335

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y KC                               G +N A  VF +  DT+ V 
Sbjct: 336 TLLDMYSKC-------------------------------GNLNGATEVFVKMGDTTIVS 364

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+I+ Y+     ++A+ LF +M+  GV  D  T+ S++ AC+    L+ G+ VH +  
Sbjct: 365 WTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 424

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  ++ V +AL++ Y+K G   +A  +FS++ V D +  NTMI              
Sbjct: 425 KNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG------------- 471

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             G SQN  P EAL+LF +M K   + D  ++A V+ ACA +++
Sbjct: 472 ------------------GYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAA 512

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           L+ G ++   +   G  SD  ++ +LVD Y KCG +
Sbjct: 513 LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 548



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 208/475 (43%), Gaps = 108/475 (22%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H + LK G   S   + N L+  Y + G    A  LFDE+   +  SWN+MI G + 
Sbjct: 215 KRVHGYVLKLG-FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 85  LGHKEKSLQLFNVM----------------------------------------PQKNDF 104
            G     L++F  M                                         ++  F
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVF 333

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S N L+  ++K G L  A  +F  M     ++W S+I  YVR G   +A+ LF E+ S  
Sbjct: 334 S-NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG 392

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           V     D + + +++ ACA  ++L+ G+ +HS+++ NG+      GS+L           
Sbjct: 393 VRP---DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGM------GSNL----------- 432

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
               V N           ALI+ YA CG + +AR VF +      V WN+MI GY  N  
Sbjct: 433 ---PVTN-----------ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLL 478

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL LF  M++    +D  T+A VL AC+ L  L+ G+++HGH  + G   D+ VA A
Sbjct: 479 PNEALELFLDMQKQFKPDDI-TMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACA 537

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+D Y+K                               CG +  A+ +F  +P K LISW
Sbjct: 538 LVDMYAK-------------------------------CGLLVLAQLLFDMIPKKDLISW 566

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             MI G   +G   EA+  F  M    +  D+ S +++++AC++   L  G + F
Sbjct: 567 TVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFF 621



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 173/380 (45%), Gaps = 65/380 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  +   G+L   R +F+ +       WN ++  Y + G  RE+V LFK++    V   
Sbjct: 135 LVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG- 193

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             + +    V+   A L  ++  K++H ++L  G                    F S   
Sbjct: 194 --NCYTFTCVLKCFAALGKVKECKRVHGYVLKLG--------------------FGSNTA 231

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V+N           +LI+ Y   G +  A  +FD  ++   V WNSMI+G + N      
Sbjct: 232 VVN-----------SLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNG 280

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L +F +M   GV  D +TL SVL AC+++G L  G+ +HG   K                
Sbjct: 281 LEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVK---------------- 324

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
                    AC  FSE    + +  NT++ +YS CG +  A  +F  M + +++SW S+I
Sbjct: 325 ---------AC--FSE----EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSII 369

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
               + G   +A+ LF  M    +R D +++ S++ ACA  SSL+ G  V + V   G+ 
Sbjct: 370 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 429

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           S+  ++ +L++ Y KCG ++
Sbjct: 430 SNLPVTNALINMYAKCGSVE 449



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 196/448 (43%), Gaps = 87/448 (19%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           ++  +  L  +L +C    ++ +G+ LH  F  K   +  +  +N LL MY +CGN   A
Sbjct: 292 VEVDLTTLVSVLVACANIGNLSLGRALH-GFGVKACFSEEVVFSNTLLDMYSKCGNLNGA 350

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------- 101
             +F +M      SW ++I  +++ G    ++ LF+ M  K                   
Sbjct: 351 TEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 410

Query: 102 --------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                               N    N LI+ +AK G ++ AR +F+ +P ++ ++WN+MI
Sbjct: 411 SSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 470

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y +N    EA+ LF     D+ ++ + D   +A V+ ACA LAAL+ G++IH HIL  
Sbjct: 471 GGYSQNLLPNEALELFL----DMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRR 526

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G   D  +  +LV++Y KCG    A  + +M+ + D    + +I+GY   G  N      
Sbjct: 527 GYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGN------ 580

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                                    EA+  F++MR  G+  D S+ +++L+ACS  G L 
Sbjct: 581 -------------------------EAISTFNEMRIAGIEPDESSFSAILNACSHSGLLN 615

Query: 322 HG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITV 379
            G K  +    + GV   +   + ++D  ++ G  S A K    + +  DT +   ++  
Sbjct: 616 EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLL-- 673

Query: 380 YSSCGRIED-------AKHIFRTMPNKS 400
            S C    D       A+HIF   P+ +
Sbjct: 674 -SGCRIHHDVKLAEKVAEHIFELEPDNT 700



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 161/362 (44%), Gaps = 75/362 (20%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N+ I+ +   G  R A+ L  +  S     L  +++   +V+  CA+  +LE GK++HS 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKS---YELGLNSY--CSVLQLCAEKKSLEDGKRVHSV 119

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           I+ NG+  D  LG+ LV +Y  CGD                     L+ G          
Sbjct: 120 IISNGISVDEALGAKLVFMYVNCGD---------------------LVQG---------- 148

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R++FD+  +    +WN ++S Y       E++ LF KM++ GV+ +  T   VL   ++L
Sbjct: 149 RKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAAL 208

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G ++  K+VHG+  K+G   +  V ++L+  Y K G    A  LF EL   D        
Sbjct: 209 GKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD-------- 260

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                                  ++SWNSMI G   NG     L++F  M  L + +D  
Sbjct: 261 -----------------------VVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLT 297

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------FIKM 489
           +L SV+ ACANI +L LG  +           + + S +L+D Y KCG        F+KM
Sbjct: 298 TLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357

Query: 490 DE 491
            +
Sbjct: 358 GD 359


>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
          Length = 594

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 186/365 (50%), Gaps = 34/365 (9%)

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F V  + + F    L+  +A  G ++ AR +F+ MP R+ +AW  M+ CY +     EA+
Sbjct: 96  FRVGAEVDGFVGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEAL 155

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            LF  +      R+  D  I+ATV+  CA    L +GK IHS++LV+    D+ +  +L+
Sbjct: 156 LLFHSMKRS---RVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALM 212

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           N+Y  C D   A ++ N + E +    + ++ GYA  GK+  A  +F+       V W++
Sbjct: 213 NMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSA 272

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MI+GY  +++  EAL LFH M+R+GV  D  T+ SV+SAC+++G LE  + +H       
Sbjct: 273 MIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIH------- 325

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                    + ++ +S        CK+          + N +I ++S CG +  A  +F 
Sbjct: 326 ---------SFVENHS-------MCKILP--------IGNALIDMFSKCGSLTLALDVFN 361

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP K++++W S+I   + +G    AL LF NM    ++ +  +   ++ AC +   +E 
Sbjct: 362 AMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEE 421

Query: 455 GEQVF 459
           G  +F
Sbjct: 422 GRLLF 426



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 144/255 (56%)

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           E D F  +AL+  YA CG++ DARRVFD   D   V W  M+  Y       EALLLFH 
Sbjct: 101 EVDGFVGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHS 160

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+R+ V+ D   +A+VLS C+    L  GK +H +      + D  V+ AL++ Y+    
Sbjct: 161 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 220

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A KL++ +   + +L  TM+  Y+  G++E A  IF  MP K ++SW++MI G +++
Sbjct: 221 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 280

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
             P+EAL+LF +M +  ++ D+ ++ SVISACAN+ +LE    + + V    +     I 
Sbjct: 281 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 340

Query: 475 TSLVDFYCKCGFIKM 489
            +L+D + KCG + +
Sbjct: 341 NALIDMFSKCGSLTL 355



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 34/236 (14%)

Query: 89  EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           E + +L+N + +K       ++ G+AK G+++ A ++FN MP ++ ++W++MI  Y  + 
Sbjct: 222 EMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESS 281

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF ++    V   + D   + +VI ACA++ ALE  + IHS +  + +     
Sbjct: 282 KPMEALNLFHDMQRSGV---KPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILP 338

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++L++++ KCG    A  V N M +                                +
Sbjct: 339 IGNALIDMFSKCGSLTLALDVFNAMPQ-------------------------------KN 367

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            V W S+I+    + +   AL LF  M+  G+  +  T   +L AC   G +E G+
Sbjct: 368 VVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGR 423



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 70/123 (56%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D  +   ++  Y++CGR+EDA+ +F  MP++ L++W  M+    Q  +  EAL LF +M 
Sbjct: 103 DGFVGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMK 162

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  +  D+  +A+V+S CA+  +L  G+ + + + +     D  +S +L++ Y  C  ++
Sbjct: 163 RSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADME 222

Query: 489 MDE 491
           M E
Sbjct: 223 MAE 225



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    ++   + +H  F++   +   LPI N L+ M+ +CG+ T AL +F+ MP++
Sbjct: 308 VISACANVGALEKARCIH-SFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQK 366

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           N  +W ++I      G    +L LF  M     Q N  ++  L+     AG ++  R LF
Sbjct: 367 NVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLF 426

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M ++  I      +  M+    R     +A  L + ++      L+ +  I  +++ A
Sbjct: 427 KIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMH------LRPNVVIWGSLLAA 480

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLN 231
           C     LE G      I    L+ D   G + V   N+Y + G++N   + L+
Sbjct: 481 CRMHGDLELGTFAAKKI----LELDPNHGGAQVLLSNIYAEYGNWNDVKEGLS 529



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 24/196 (12%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP----R 131
           NA+I+ F K G    +L +FN MPQKN  +W  +I+  A  G+ ++A TLF +M     +
Sbjct: 341 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 400

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSD-----LVERLQC--DAFILATVIGACAD 184
            N + +  +++     G   E   LFK +        + E   C  D    A ++G  AD
Sbjct: 401 PNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAAD 460

Query: 185 LAALEYGKQIHS-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           L        I S H+  N + + S+L +  ++   + G F +A ++L +  +P+      
Sbjct: 461 L--------IQSMHLRPNVVIWGSLLAACRMHGDLELGTF-AAKKILEL--DPNHGGAQV 509

Query: 244 LISG-YANCGKMNDAR 258
           L+S  YA  G  ND +
Sbjct: 510 LLSNIYAEYGNWNDVK 525


>gi|225459473|ref|XP_002284396.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Vitis vinifera]
          Length = 690

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 145/539 (26%), Positives = 238/539 (44%), Gaps = 106/539 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +++ C    +   G+ LH H +K G+ N     AN LL MY+      DA  LFDE 
Sbjct: 6   IVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVF-FANNLLAMYVDISLLKDARRLFDET 64

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSW---------------- 106
             RN  +W  MI  +   G  + +L+ +  M +      N F +                
Sbjct: 65  LERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESG 124

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N L+  + K G L +AR +F+D+   ++ +WN+MI  Y + 
Sbjct: 125 KLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKE 184

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL-VNGLDFD 206
           G   EAV LF ++     + +  ++ I     G    L AL +   +H   L ++G  F 
Sbjct: 185 GLMEEAVNLFYQMPEP--DTVSWNSIIAG--FGCKESLGALRFVCMMHRKGLKLDGFTFS 240

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD-----------FCLSALISGYANCGKMN 255
             L +        CG F    Q+L M+K+              F  SAL+  Y+NC +++
Sbjct: 241 CALKT--------CGCF----QLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNELD 288

Query: 256 DARRVFDRTTDTSS------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           +A ++FD  +  S+       +WNSM+SGY+ N +++ A+ L  ++   G   D+ T  S
Sbjct: 289 EAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSLGAHVDSFTFGS 348

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
            L  C +L     G QV G A   G   D +V S L+D Y+  G                
Sbjct: 349 ALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDG---------------- 392

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                          +I+DA  +F  +P K ++ W+S+I   ++ G       LF +M  
Sbjct: 393 ---------------KIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVN 437

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           LD+ +D+F ++SV+ AC+++  L  G+QV +     G +S++I  TSL+D Y KCG I+
Sbjct: 438 LDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIE 496



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 151/329 (45%), Gaps = 48/329 (14%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           + +VI  C    A  +G+ +H+HI+                   K G FN          
Sbjct: 6   IVSVIRQCGRFRAFRHGRSLHAHII-------------------KLGVFN---------- 36

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
             D F  + L++ Y +   + DARR+FD T + +   W +MIS Y S+     AL  + +
Sbjct: 37  --DVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQ 94

Query: 295 MRR------NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           M        NG L  A     VL AC  +G LE GK +HG   +  +  D ++ + LLD 
Sbjct: 95  MLESKSETPNGFLYSA-----VLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDM 149

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G  S A K+F ++    +   NTMI+ Y   G +E+A ++F  MP    +SWNS+I
Sbjct: 150 YVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSII 209

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G     S + AL   C M++  L++D F+ +  +  C     L + +Q+   V   G  
Sbjct: 210 AGFGCKES-LGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFG 268

Query: 469 SDQIISTSLVDFYCKCG----FIKM-DEY 492
           S    +++LVD Y  C      IKM DEY
Sbjct: 269 SCCFTASALVDSYSNCNELDEAIKMFDEY 297



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 203/527 (38%), Gaps = 147/527 (27%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD----- 65
           +L++C     +  GK +H    +  +   T+ + N LL MY++CG+ + A  +FD     
Sbjct: 111 VLKACGLVGDLESGKLIHGRVFRANLGFDTV-LMNTLLDMYVKCGSLSSARKVFDDILCP 169

Query: 66  --------------------------EMPRRNCFSWNAMIEGFMKLGHKEK--SLQLFNV 97
                                     +MP  +  SWN++I GF   G KE   +L+   +
Sbjct: 170 SSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGF---GCKESLGALRFVCM 226

Query: 98  MPQKN---------------------------------------DFSWNMLISGFAKAGE 118
           M +K                                         F+ + L+  ++   E
Sbjct: 227 MHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNE 286

Query: 119 LKTARTLFNDMPRRNA------IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           L  A  +F++    +A        WNSM+  YV N     A+ L  +++S        D+
Sbjct: 287 LDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHS---LGAHVDS 343

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           F   + +  C +L     G Q+    + +G + D V+GS L++LY               
Sbjct: 344 FTFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLY--------------- 388

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                           AN GK+ DA R+F R  +   V+W+S+IS       ++    LF
Sbjct: 389 ----------------ANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLF 432

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             M    +  D   ++SVL ACSSL  L  GKQVH    K G   + I  ++L+D Y+K 
Sbjct: 433 RDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAK- 491

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                         CG IED   +F     +  + +  +I+G  
Sbjct: 492 ------------------------------CGEIEDGLALFYCTSERDTVCYTGIIMGCG 521

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           QNG  +EA+  F  M +L L+ ++ +   V+SAC +   +E    +F
Sbjct: 522 QNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIF 568



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 30/183 (16%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D   + SV+  C       HG+ +H H  K+GV +DV  A+ LL  Y    +  DA +LF
Sbjct: 2   DLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLF 61

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            E    +     TMI+ YSS GR + A   +  M               S++ +P     
Sbjct: 62  DETLERNVATWTTMISAYSSSGRPDTALKFYVQMLE-------------SKSETP----- 103

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
                       + F  ++V+ AC  +  LE G+ +  RV    L  D ++  +L+D Y 
Sbjct: 104 ------------NGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYV 151

Query: 483 KCG 485
           KCG
Sbjct: 152 KCG 154


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 212/424 (50%), Gaps = 43/424 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           N L++ Y   G P +AL L  ++ RR    N F+   +++   +    E +L    V  +
Sbjct: 76  NSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIK 135

Query: 101 ----KNDFSWNMLISGFAKAGELKTARTLFNDM-PRRNAIAWNSMIHCYVRNGFAREAVR 155
               +  F  N L+   A AG L+ +R LF +M P RN ++WN+MI    + G   EA  
Sbjct: 136 LGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACA 195

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           LF+E+     + +  D F   +++  C+    LE G+ +H H+L +G   D +LG++LV+
Sbjct: 196 LFREMRR---QGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVD 252

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +YGKCGD   A++  ++M   +    ++++   A  G ++ AR  F++  + + + WN+M
Sbjct: 253 MYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAM 312

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           IS Y+      E L L+++M+  G+  D  TLA VLS     G L  G+ +H +      
Sbjct: 313 ISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCY------ 366

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
                    + D++S  G+                 +LN++I +Y+ CG+++ +  +F  
Sbjct: 367 ---------IQDSFSDPGV----------------TVLNSLIDMYARCGQVDTSISLFTE 401

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MPNK+ ISWN +I  L+ +G   EA+  F  M       D+ +   ++SAC++   LE G
Sbjct: 402 MPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDG 461

Query: 456 EQVF 459
           +  F
Sbjct: 462 QYYF 465



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 173/379 (45%), Gaps = 35/379 (9%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +SG A    L  AR +F+ +P  +  A+NS+I  Y  +G  +EA+ L +++   L   + 
Sbjct: 48  LSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDV---LRRGIL 104

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            + F L  V+ AC+   A E+    H                      G         QV
Sbjct: 105 PNEFTLPFVLKACSRARAAEHALATH----------------------GVAIKLGYVRQV 142

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEA 288
                    F  +AL+   A+ G + D+RR+F       +V+ WN+MI G     E +EA
Sbjct: 143 ---------FVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEA 193

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             LF +MRR GVL D  T  S+L  CS  G LE G+ VH H    G   D+I+ +AL+D 
Sbjct: 194 CALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDM 253

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G    A + F  + + + +   +M+   +  G ++ A+  F  MP +++ISWN+MI
Sbjct: 254 YGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMI 313

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
               Q G   E L L+  M  L L  D+ +LA V+S       L  G  +   +     D
Sbjct: 314 SCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSD 373

Query: 469 SDQIISTSLVDFYCKCGFI 487
               +  SL+D Y +CG +
Sbjct: 374 PGVTVLNSLIDMYARCGQV 392



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 116/246 (47%), Gaps = 32/246 (13%)

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +SG A    +  ARR+FDR  D     +NS+I  Y ++    EAL L   + R G+L + 
Sbjct: 48  LSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNE 107

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            TL  VL ACS     EH    HG A K+G +  V V +ALL + +              
Sbjct: 108 FTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSA-------------- 153

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEALDL 423
                            S G + D++ +F  M P+++++SWN+MI G +Q G   EA  L
Sbjct: 154 -----------------SAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACAL 196

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M +  +  D F+  S++  C+   +LE+G  V   +   G   D I+  +LVD Y K
Sbjct: 197 FREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGK 256

Query: 484 CGFIKM 489
           CG + M
Sbjct: 257 CGDLWM 262



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 153/383 (39%), Gaps = 70/383 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C+   ++ VG+ +H H L  G     L + N L+ MY +CG+   A   FD MP +
Sbjct: 215 LLLVCSKEGNLEVGRLVHCHMLASGS-RVDLILGNALVDMYGKCGDLWMAHRCFDVMPIK 273

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N  SW +M+    K G  + +   F  MP++N  SWN +IS                   
Sbjct: 274 NVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMIS------------------- 314

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                       CYV+ G   E + L+  + S     L  D   LA V+        L  
Sbjct: 315 ------------CYVQGGRFPETLGLYNRMKS---LGLTPDEVTLAGVLSVHGQNGDLAS 359

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ IH +I  +  D    + +SL+++Y +CG  +++                  IS    
Sbjct: 360 GRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTS------------------IS---- 397

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                    +F    + +++ WN +I     +    EA++ F  M  +    D  T   +
Sbjct: 398 ---------LFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGL 448

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           LSACS  G LE G Q +  A +    V  +V   + ++D   + G  + A  L  ++ + 
Sbjct: 449 LSACSHGGLLEDG-QYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMK 507

Query: 369 -DTILLNTMITVYSSCGRIEDAK 390
            D ++   +I      G +E  K
Sbjct: 508 PDVVVWGALIGACRIHGHVEIGK 530


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 217/498 (43%), Gaps = 107/498 (21%)

Query: 3   TRI--DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           TR+  D    LLQ C    S+  G+++H   LK GI  +   + N LL MY +CG+ TDA
Sbjct: 92  TRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY-LENTLLSMYAKCGSLTDA 150

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK-------NDFS-- 105
             +FD +  RN  SW AMIE F+      ++ + +  M      P K       N F+  
Sbjct: 151 RRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNP 210

Query: 106 ------------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                      L+  +AK G++  A+ +F+ +P +N + W  +I
Sbjct: 211 ELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLI 270

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y + G    A+ L +++    V     +     +++  C    ALE+GK++H +I+ +
Sbjct: 271 AGYAQQGQVDVALELLEKMQQAEVAP---NKITYTSILQGCTTPLALEHGKKVHRYIIQS 327

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G              YG+                 + + ++ALI+ Y  CG + +AR++F
Sbjct: 328 G--------------YGR-----------------EIWVVNALITMYCKCGGLKEARKLF 356

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                   V W +M++GY       EA+ LF +M++ G+  D  T  S L++CSS  FL+
Sbjct: 357 GDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQ 416

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK +H      G   DV + SAL+  Y+K G   DA  +F+++   + +    MIT   
Sbjct: 417 EGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMIT--- 473

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                                       G +Q+G   EAL+ F  M K  ++ DK +  S
Sbjct: 474 ----------------------------GCAQHGRCREALEYFEQMKKQGIKPDKVTFTS 505

Query: 442 VISACANISSLELGEQVF 459
           V+SAC ++  +E G + F
Sbjct: 506 VLSACTHVGLVEEGRKHF 523



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/504 (24%), Positives = 220/504 (43%), Gaps = 119/504 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +      + VG+++H+   K G L     +   L+ MY +CG+ + A ++FD++P +
Sbjct: 203 LLNAFTNPELLQVGQKVHMEIAKAG-LELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEK 261

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFS------------------- 105
           N  +W  +I G+ + G  + +L+L        V P K  ++                   
Sbjct: 262 NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVH 321

Query: 106 ------------W--NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                       W  N LI+ + K G LK AR LF D+P R+ + W +M+  Y + GF  
Sbjct: 322 RYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHD 381

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+ +     + ++ D     + + +C+  A L+ GK IH  ++  G   D  L S
Sbjct: 382 EAIDLFRRMQQ---QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQS 438

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV++                               YA CG M+DAR VF++ ++ + V 
Sbjct: 439 ALVSM-------------------------------YAKCGSMDDARLVFNQMSERNVVA 467

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ------ 325
           W +MI+G   +    EAL  F +M++ G+  D  T  SVLSAC+ +G +E G++      
Sbjct: 468 WTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMY 527

Query: 326 --------VHGHACKVGVI---------DDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
                   V  ++C V ++         ++VI+        S  G    AC++ S+++  
Sbjct: 528 LDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERG 587

Query: 369 DTILLNTMI-------------TVYSSCGRIEDAKHIFRTMPNKSLI-----SW----NS 406
           +    N +               +Y++ GR EDA+ + + M  + ++     SW      
Sbjct: 588 ERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGK 647

Query: 407 MIVGLSQNGSPIEALDLFCNMNKL 430
           + V   ++ S  EA +++  + KL
Sbjct: 648 VHVFHVEDKSHPEAKEIYAELGKL 671



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 188/396 (47%), Gaps = 67/396 (16%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q N +  N L+S +AK G L  AR +F+ +  RN ++W +MI  +V      EA + ++ 
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +    +   + D     +++ A  +   L+ G+++H  I   GL+ +  +G+SLV +Y K
Sbjct: 188 MK---LAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAK 244

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                          CG ++ A+ +FD+  + + V W  +I+GY
Sbjct: 245 -------------------------------CGDISKAQVIFDKLPEKNVVTWTLLIAGY 273

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
               +   AL L  KM++  V  +  T  S+L  C++   LEHGK+VH +  + G   ++
Sbjct: 274 AQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREI 333

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V                               +N +IT+Y  CG +++A+ +F  +P++
Sbjct: 334 WV-------------------------------VNALITMYCKCGGLKEARKLFGDLPHR 362

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            +++W +M+ G +Q G   EA+DLF  M +  ++ DK +  S +++C++ + L+ G+ + 
Sbjct: 363 DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIH 422

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
            ++   G   D  + ++LV  Y KCG   MD+  L+
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCG--SMDDARLV 456



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 175/389 (44%), Gaps = 71/389 (18%)

Query: 106 WNMLISGFAKAGELKTARTLFNDMP------RRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           +N   S    A EL T     + +P      + + +A +  +    + G  +EA+ +   
Sbjct: 27  FNRYQSNVDTAFELTTPTVSHDQLPGNAGFRKVDTLANSGDVSILCKQGRLKEALGI--- 83

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           LN+ +++  +  + +   ++  CA L +LE G+++H+ IL +G+                
Sbjct: 84  LNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI---------------- 127

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                          +P+ +  + L+S YA CG + DARRVFD   D + V W +MI  +
Sbjct: 128 ---------------QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAF 172

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
           ++ N++ EA   +  M+  G   D  T  S+L+A ++   L+ G++VH    K G+  + 
Sbjct: 173 VAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEP 232

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V ++L+  Y+K                               CG I  A+ IF  +P K
Sbjct: 233 RVGTSLVGMYAK-------------------------------CGDISKAQVIFDKLPEK 261

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           ++++W  +I G +Q G    AL+L   M + ++  +K +  S++  C    +LE G++V 
Sbjct: 262 NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVH 321

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             +   G   +  +  +L+  YCKCG +K
Sbjct: 322 RYIIQSGYGREIWVVNALITMYCKCGGLK 350


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 214/479 (44%), Gaps = 98/479 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + + Q C+   ++  GK+ H H +  G    T+ + N L+QMY++C     A  +F+E 
Sbjct: 27  FSHIFQECSNRRALKPGKEAHAHMILSG-FTPTVFVTNCLIQMYVKCCALEYAYKVFEE- 84

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                         MPQ++  SWN ++ G A AG ++ A+ +FN
Sbjct: 85  ------------------------------MPQRDIVSWNTMVFGCAGAGRMELAQAVFN 114

Query: 128 DMPRR-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
            MP   + ++WNS+I  Y++NG  ++++ +F ++  DL   +  D   LA  +  C+ L 
Sbjct: 115 SMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMR-DL--GVMFDHTTLAVSLKICSLLE 171

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
               G QIH   +  G D+D V GS+LV++                              
Sbjct: 172 DQVLGIQIHGIAVQMGFDYDVVTGSALVDM------------------------------ 201

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
            YA C  + D+  VF    D + + W++ I+G + N++    L LF +M+R G+    ST
Sbjct: 202 -YAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQST 260

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
            ASV  +C+ L     G Q+H HA K     DVIV +A LD Y+K    SDA KLFS L 
Sbjct: 261 YASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLL- 319

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                                         P+ +L S+N+MI+G ++N    +A  LF  
Sbjct: 320 ------------------------------PDHNLQSYNAMIIGYARNEQGFQAFKLFLQ 349

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + K     D+ SL+  +SA A I     G Q+        L S+  ++ +++D Y KCG
Sbjct: 350 LQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCG 408



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 228/517 (44%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L+ C+      +G Q+H   ++ G  +  +   + L+ MY +C +  D+L +F E+
Sbjct: 160 LAVSLKICSLLEDQVLGIQIHGIAVQMG-FDYDVVTGSALVDMYAKCNSLEDSLDVFSEL 218

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N  SW+A I G ++     + L+LF  M +                           
Sbjct: 219 PDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGT 278

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K DF  ++++       +AK   +  A  LF+ +P  N  ++N+MI  Y RN 
Sbjct: 279 QLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNE 338

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A +LF +L  +       D   L+  + A A +     G Q+H   + + L  +  
Sbjct: 339 QGFQAFKLFLQLQKN---SFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNIC 395

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++++++YGKCG                     AL+          +A  +FD      
Sbjct: 396 VANAILDMYGKCG---------------------ALV----------EASGLFDEMEIRD 424

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN++I+    N  + + L  F  M R+ +  D  T  SVL AC+      +G +VHG
Sbjct: 425 PVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHG 484

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+   + V SAL+D YSK GM                               +E+
Sbjct: 485 RIIKSGMGLKMFVGSALVDMYSKCGM-------------------------------MEE 513

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ I   +  ++++SWN++I G S      ++   F +M ++ +  D F+ A+V+  CAN
Sbjct: 514 AEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCAN 573

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++++ LG+Q+ A++  + L SD  I+++LVD Y KCG
Sbjct: 574 LATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCG 610



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 223/521 (42%), Gaps = 108/521 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A + +SC    +  +G QLH H LK     S + +    L MY +C N +DA  LF  +P
Sbjct: 262 ASVFRSCAGLSASRLGTQLHCHALKTD-FGSDVIVGTATLDMYAKCDNMSDAYKLFSLLP 320

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW---------------------- 106
             N  S+NAMI G+ +     ++ +LF +  QKN FS+                      
Sbjct: 321 DHNLQSYNAMIIGYARNEQGFQAFKLF-LQLQKNSFSFDEVSLSGALSAAAVIKGHSEGL 379

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N ++  + K G L  A  LF++M  R+ ++WN++I    +N 
Sbjct: 380 QLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNE 439

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              + +  F  +   L  +++ D F   +V+ ACA   A   G ++H  I+ +G+     
Sbjct: 440 SEGKTLSHFGAM---LRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMF 496

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +GS+LV++Y K                               CG M +A ++  R  + +
Sbjct: 497 VGSALVDMYSK-------------------------------CGMMEEAEKIHYRLEEQT 525

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN++ISG+    +  ++   F  M   GV  D  T A+VL  C++L  +  GKQ+H 
Sbjct: 526 MVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHA 585

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K+ ++ DV + S L+D YSK G   D+  +F +    D++  N M            
Sbjct: 586 QMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAM------------ 633

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                              I G + +G   EAL+LF +M   +++ +  +  SV+ AC++
Sbjct: 634 -------------------ICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSH 674

Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIK 488
           + + + G   F ++ +I  L+      + +VD   + G ++
Sbjct: 675 VGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVE 715



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 1/180 (0%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           T + +   CS+   L+ GK+ H H    G    V V + L+  Y K      A K+F E+
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLF 424
              D +  NTM+   +  GR+E A+ +F +MP+   ++SWNS+I G  QNG   +++ +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M  L +  D  +LA  +  C+ +    LG Q+      +G D D +  ++LVD Y KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/535 (27%), Positives = 250/535 (46%), Gaps = 118/535 (22%)

Query: 10  RLLQ---SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +LLQ    C  + +I  G+ LH   LK G + S++ + N  L +Y +  + + AL LFD 
Sbjct: 13  QLLQDLIECTHNKNILKGRTLHARILKTGSI-SSIYVTNTFLNLYAKTNHLSHALTLFDS 71

Query: 67  MPR--RNCFSWNAMIEGFMKLGHKEK----SLQLF-------NVMPQKND---------- 103
           +    ++  SWN++I  F +  H       ++ LF       NV+P  +           
Sbjct: 72  INDNDKDDVSWNSLINAFSQ-NHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASN 130

Query: 104 -----------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                                  +  + L++ + K G +  AR LF+ MP RN ++W +M
Sbjct: 131 LSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATM 190

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  Y  +  A +AV +F+ +  +  E +Q + F L +V+ A      +  G+Q+HS  + 
Sbjct: 191 ISGYASSDIADKAVEVFELMRRE--EEIQ-NEFALTSVLSALTSDVFVYTGRQVHSLAIK 247

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           NGL        ++V++         AN               AL++ YA CG ++DA R 
Sbjct: 248 NGL-------LAIVSV---------AN---------------ALVTMYAKCGSLDDAVRT 276

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F+ + D +S+ W++M++GY    +  +AL LF+KM  +GVL    TL  V++ACS L  +
Sbjct: 277 FEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAV 336

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             GKQ+H  A K+G    + V SA++D Y+K                             
Sbjct: 337 VEGKQMHSFAFKLGFGLQLYVLSAVVDMYAK----------------------------- 367

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG + DA+  F  +    ++ W S+I G  QNG     L+L+  M    +  ++ ++A
Sbjct: 368 --CGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMA 425

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           SV+ AC+++++L+ G+Q+ AR+   G   +  I ++L   Y KCG   +D+ YL+
Sbjct: 426 SVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCG--SLDDGYLI 478



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 142/491 (28%), Positives = 220/491 (44%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +  + +    +  GKQ H   +K G  +  + + + LL MY + G   DA  LFD M
Sbjct: 121 LAGVFSAASNLSDVVAGKQAHSVAVKTGC-SGDVYVGSSLLNMYCKTGFVFDARKLFDRM 179

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW----------------- 106
           P RN  SW  MI G+      +K++++F +M +    +N+F+                  
Sbjct: 180 PERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGR 239

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ +AK G L  A   F     +N+I W++M+  Y + G
Sbjct: 240 QVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGG 299

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +A++LF +++S  V   +   F L  VI AC+DL A+  GKQ+HS        F   
Sbjct: 300 DSDKALKLFNKMHSSGVLPSE---FTLVGVINACSDLCAVVEGKQMHS--------FAFK 348

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG  L  LY                       LSA++  YA CG + DAR+ F+      
Sbjct: 349 LGFGL-QLY----------------------VLSAVVDMYAKCGSLADARKGFECVQQPD 385

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V+W S+I+GY+ N +    L L+ KM+   V+ +  T+ASVL ACSSL  L+ GKQ+H 
Sbjct: 386 VVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHA 445

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +V + SAL   Y+K G   D   +F  +   D I  N MI+          
Sbjct: 446 RIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMIS---------- 495

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                GLSQNG   +AL+LF  M    ++ D  +  +++SAC++
Sbjct: 496 ---------------------GLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSH 534

Query: 449 ISSLELGEQVF 459
           +  ++ G + F
Sbjct: 535 MGLVDRGWEYF 545


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 229/503 (45%), Gaps = 106/503 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF- 82
           G +LH   L++G L       N L+  Y  CG   DA  +FDEMP R+  SWN+++  F 
Sbjct: 138 GLELHASALRRGHLADVF-TGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFL 196

Query: 83  ---------------MKLGHKEKSLQLFNVMP-----QKNDFSW---------------- 106
                          M+ G       L +V+P     Q+  F                  
Sbjct: 197 VNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVN 256

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L+  + K G+++ +  +F+ M  +N ++WNS I C++  GF  + +R+F++++   
Sbjct: 257 LANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSE-- 314

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              +   +  L++++ A  +L + + G+++H + +   +D D  + +SLV++Y K     
Sbjct: 315 -HNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKF---- 369

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                      G +  A  +F++  D + V WN+MI+  + N  
Sbjct: 370 ---------------------------GSLEKASTIFEQMKDRNVVSWNAMIANLVQNGA 402

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           +TEA  L   M+++G   ++ TL +VL AC+ +  L+ GKQ+H  + + G++ D+ +++A
Sbjct: 403 ETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNA 462

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+D                               +YS CG++  A++IF     K  +S+
Sbjct: 463 LID-------------------------------MYSKCGQLSLARNIFER-SEKDDVSY 490

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++I+G SQ+    E+L LF  M  + +  D  S    +SAC N+S  + G+++   +  
Sbjct: 491 NTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVR 550

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
             L     +S SL+D Y K G +
Sbjct: 551 RLLSGHPFLSNSLLDLYTKGGML 573



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/518 (26%), Positives = 236/518 (45%), Gaps = 108/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C T      G  +H   +K G LN+ + +AN L+ MY + G+   ++ +FD M
Sbjct: 223 LVSVVPACGTEQEEKFGLSIHALAVKVG-LNTMVNLANALVDMYGKFGDVEASMQVFDGM 281

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK-------------------- 101
             +N  SWN+ I  F+  G     L++F      NVMP                      
Sbjct: 282 LEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGR 341

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + F  N L+  +AK G L+ A T+F  M  RN ++WN+MI   V+NG
Sbjct: 342 EVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNG 401

Query: 149 FAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
              EA RL     +D+ +  +C ++  L  V+ ACA +A+L+ GKQIH+  +  GL FD 
Sbjct: 402 AETEAFRLV----TDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDL 457

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++L+++Y K                               CG+++ AR +F+R+ + 
Sbjct: 458 FISNALIDMYSK-------------------------------CGQLSLARNIFERS-EK 485

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V +N++I GY  +    E+LLLF +MR  G+  DA +    LSAC++L   +HGK++H
Sbjct: 486 DDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIH 545

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
               +  +     ++++LLD Y+K GM   A K+F+++   D    NTMI  Y   G+I+
Sbjct: 546 CVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQID 605

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A  +F  M                                   L  D  S  +V++AC+
Sbjct: 606 IAFELFELMKGDG-------------------------------LDYDHVSYIAVLAACS 634

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +   ++ G++ F+++    ++  Q+    +VD   + G
Sbjct: 635 HGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAG 672



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/504 (25%), Positives = 223/504 (44%), Gaps = 108/504 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR--NCFSWNAMIEGF 82
           ++ H   L  G L ++LP+A  LL  Y    +   A L+    P R  + F WN++    
Sbjct: 33  RRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRAL 92

Query: 83  MKLGHKEKSLQLFNVM------PQKNDFSW------------------------------ 106
                  ++L+++N+M      P    F +                              
Sbjct: 93  SSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLA 152

Query: 107 -----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                N L++ +A  G+   AR +F++MP R+ ++WNS++  ++ NG   +A R    L 
Sbjct: 153 DVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARR---ALV 209

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           S +      +   L +V+ AC      ++G  IH+  +  GL+    L ++LV++YGK G
Sbjct: 210 SMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFG 269

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           D  ++ QV                               FD   + + V WNS I  +++
Sbjct: 270 DVEASMQV-------------------------------FDGMLEQNEVSWNSAIGCFLN 298

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
                + L +F KM  + V+  + TL+S+L A   LG  + G++VHG++ K  +  D+ V
Sbjct: 299 AGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 358

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           A++L+D                               +Y+  G +E A  IF  M ++++
Sbjct: 359 ANSLVD-------------------------------MYAKFGSLEKASTIFEQMKDRNV 387

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           +SWN+MI  L QNG+  EA  L  +M K     +  +L +V+ ACA ++SL++G+Q+ A 
Sbjct: 388 VSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAW 447

Query: 462 VTIIGLDSDQIISTSLVDFYCKCG 485
               GL  D  IS +L+D Y KCG
Sbjct: 448 SIRRGLMFDLFISNALIDMYSKCG 471



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 115/489 (23%), Positives = 208/489 (42%), Gaps = 112/489 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +     S  +G+++H + +K+  ++  + +AN L+ MY + G+   A  +F++M
Sbjct: 324 LSSLLPALVELGSFDLGREVHGYSIKRA-MDLDIFVANSLVDMYAKFGSLEKASTIFEQM 382

Query: 68  PRRNCFSWNAMI----------EGF------MKLGHKEKSLQLFNVMPQ----------K 101
             RN  SWNAMI          E F       K G    S+ L NV+P           K
Sbjct: 383 KDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGK 442

Query: 102 NDFSW-------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
              +W             N LI  ++K G+L  AR +F +   ++ +++N++I  Y ++ 
Sbjct: 443 QIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSYNTLILGYSQSP 501

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +  E++ LFK++ S  ++    DA      + AC +L+  ++GK+IH  ++   L     
Sbjct: 502 WCFESLLLFKQMRSVGIDY---DAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPF 558

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L +SL++LY K G   +A+                               ++F++ T   
Sbjct: 559 LSNSLLDLYTKGGMLVTAS-------------------------------KIFNKITKKD 587

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK---- 324
              WN+MI GY  + +   A  LF  M+ +G+  D  +  +VL+ACS  G ++ GK    
Sbjct: 588 VASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFS 647

Query: 325 ----------QVHGHACKVGVIDDVIVASALLDTYSKRGMPSD---------ACKLFS-- 363
                     Q+H +AC V ++      S   +       P++         AC++    
Sbjct: 648 QMVAQNIEPQQMH-YACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNI 706

Query: 364 -----------ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                      ELK   +     MI +Y+  GR  +A  I + M ++ +    +      
Sbjct: 707 ELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQD 766

Query: 413 QNGSPIEAL 421
           Q+G+ ++A 
Sbjct: 767 QDGNKLQAF 775



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 35/250 (14%)

Query: 243 ALISGYANCGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           AL+  YA    +  AR V         S+ +WNS+     S +  +EAL +++ M R+ V
Sbjct: 54  ALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRALSSASLPSEALRVYNLMLRSAV 113

Query: 301 LEDASTLA--SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
             D  T       +A +     + G ++H  A + G + DV                   
Sbjct: 114 RPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTG---------------- 157

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                          NT++  Y++CG+  DA+ +F  MP + ++SWNS++     NG   
Sbjct: 158 ---------------NTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFH 202

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           +A     +M +    ++  SL SV+ AC      + G  + A    +GL++   ++ +LV
Sbjct: 203 DARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALV 262

Query: 479 DFYCKCGFIK 488
           D Y K G ++
Sbjct: 263 DMYGKFGDVE 272


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 228/493 (46%), Gaps = 105/493 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           + R+LQ+C    +++  KQ+H +  + G L+S + + N L+ MY + G    A  +FD M
Sbjct: 237 IVRVLQACGKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKNGKLELARRVFDSM 295

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             RN  SWN+MI  +  LG    +  LF                      EL+++     
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFY---------------------ELESS----- 329

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           DM + + + WN ++  +  +G+  E + + + +     E  + ++  + +V+ A ++L  
Sbjct: 330 DM-KPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG---EGFKPNSSSMTSVLQAISELGF 385

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  GK+ H ++L NG D D  +G+SL+++Y K     SA  V + MK  + F  ++L+SG
Sbjct: 386 LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSG 445

Query: 248 YANCGKMNDARRVFDRTTDTSS----VMWNSMISGY------------------------ 279
           Y+  G   DA R+ ++          V WN MISGY                        
Sbjct: 446 YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPN 505

Query: 280 -------------ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
                          NN D+  L  F +M++ GV+ +++++  +L AC+SL  L+ GK++
Sbjct: 506 VVSWTALISGSSQAGNNRDS--LKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEI 563

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  + + G I+DV VA+AL+D YSK                                  +
Sbjct: 564 HCLSIRNGFIEDVFVATALIDMYSK-------------------------------SSSL 592

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           ++A  +FR + NK+L SWN MI+G +  G   EA+ +F  M K+ +  D  +  +++SAC
Sbjct: 593 KNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSAC 652

Query: 447 ANISSLELGEQVF 459
            N   +  G + F
Sbjct: 653 KNSGLIGEGWKYF 665



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 201/425 (47%), Gaps = 50/425 (11%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L++ + +   L+ A  +F++MP   A+ WN  I   +++   ++ V LF+++       L
Sbjct: 174 LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSF---L 230

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + +   +  V+ AC  + AL   KQIH ++   GLD D  L + L+++Y K G    A +
Sbjct: 231 KAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARR 290

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVF------DRTTDTSSVMWNSMISGYISN 282
           V + M+  +    +++IS YA  G +NDA  +F      D   D   V WN ++SG+  +
Sbjct: 291 VFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDI--VTWNCLLSGHFLH 348

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               E L +  +M+  G   ++S++ SVL A S LGFL  GK+ HG+  + G   DV V 
Sbjct: 349 GYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVG 408

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL- 401
           ++L+D Y K    + A  +F  +K  +    N++++ YS  G  EDA  +   M  + + 
Sbjct: 409 TSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 468

Query: 402 --------------------------------------ISWNSMIVGLSQNGSPIEALDL 423
                                                 +SW ++I G SQ G+  ++L  
Sbjct: 469 PDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKF 528

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M +  +  +  S+  ++ ACA++S L+ G+++       G   D  ++T+L+D Y K
Sbjct: 529 FAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK 588

Query: 484 CGFIK 488
              +K
Sbjct: 589 SSSLK 593



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 180/393 (45%), Gaps = 41/393 (10%)

Query: 98  MPQK--NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN-GFAREAV 154
           +PQK   D +   LIS +   G+  +A  +F     RN + WNS +  +  + G     +
Sbjct: 59  LPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVL 118

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            +FKEL+   V     D+ + +  +  C  +  +  G +IH  ++  G D D  L  +L+
Sbjct: 119 EVFKELHGKGV---VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALM 175

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           N YG+C                                 +  A +VF    +  +++WN 
Sbjct: 176 NFYGRCWG-------------------------------LEKANQVFHEMPNPEALLWNE 204

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
            I   + + +  + + LF KM+ + +  + +T+  VL AC  +G L   KQ+HG+  + G
Sbjct: 205 AIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFG 264

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  DV + + L+  YSK G    A ++F  ++  +T   N+MI+ Y++ G + DA  +F 
Sbjct: 265 LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY 324

Query: 395 TMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            + +      +++WN ++ G   +G   E L++   M     + +  S+ SV+ A + + 
Sbjct: 325 ELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELG 384

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
            L +G++    V   G D D  + TSL+D Y K
Sbjct: 385 FLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK 417



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 196/446 (43%), Gaps = 84/446 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +LQ+ +    +++GK+ H + L+ G  +  + +   L+ MY++  + T A  +FD M
Sbjct: 373 MTSVLQAISELGFLNMGKETHGYVLRNG-FDCDVYVGTSLIDMYVKNHSLTSAQAVFDNM 431

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
             RN F+WN+++ G+   G  E +L+L N M +   K D  +WN +ISG+A  G  K A 
Sbjct: 432 KNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEAL 491

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            + +         N ++W ++I    + G  R++++ F ++     E +  ++  +  ++
Sbjct: 492 AVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQ---EGVMPNSASITCLL 548

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA L+ L+ GK+IH   + NG   D  + ++L+++Y K                    
Sbjct: 549 RACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSS----------------- 591

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                         + +A +VF R  + +   WN MI G+       EA+ +F++M++ G
Sbjct: 592 --------------LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG 637

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHG-------------HAC-------KVGVID-- 337
           V  DA T  ++LSAC + G +  G +                H C       + G +D  
Sbjct: 638 VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 697

Query: 338 -DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN-------------TMITVYSSC 383
            D+I    L    +  G    +C++   LK  +T   N              M+ +YS  
Sbjct: 698 WDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIF 757

Query: 384 GRIEDAKHIFRTMP-----NKSLISW 404
            R ED  H+   M      N+ + SW
Sbjct: 758 NRWEDMDHLRELMGAAGVRNRQVWSW 783



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 36/264 (13%)

Query: 231 NMMKEPDDFCLSA----LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            M+K P  +   A    LIS Y   G    A  VF      + + WNS +  + S+    
Sbjct: 55  QMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSL 114

Query: 287 EALL-LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
             +L +F ++   GV+ D+   +  L  C+ +  +  G ++HG   K G   DV +  AL
Sbjct: 115 HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 174

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           ++ Y +                               C  +E A  +F  MPN   + WN
Sbjct: 175 MNFYGR-------------------------------CWGLEKANQVFHEMPNPEALLWN 203

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
             I+   Q+    + ++LF  M    L+ +  ++  V+ AC  + +L   +Q+   V   
Sbjct: 204 EAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRF 263

Query: 466 GLDSDQIISTSLVDFYCKCGFIKM 489
           GLDSD  +   L+  Y K G +++
Sbjct: 264 GLDSDVSLCNPLISMYSKNGKLEL 287


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 234/500 (46%), Gaps = 52/500 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRL-LQMYMRCGNPTDALLLFDEMPR 69
           +++SC+T   +   KQ+       GI+    P++  +        G+   A  +F+ + +
Sbjct: 163 IMESCSTMRQL---KQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQ 219

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------KNDFS---- 105
            N F WN MI G+        +   F  M Q                    +  F     
Sbjct: 220 PNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESV 279

Query: 106 ----WNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
               W M           LI  +A+ G LK AR +F++   ++ + W +MI  Y  +  +
Sbjct: 280 YCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCS 339

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ +F+ +   L+  ++ +   L  V+ AC+D+  LE GK++H  +    +     L 
Sbjct: 340 EEAMEVFELM---LLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLH 396

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+++Y KC     A ++ + M   D +  +++++GYA CG +  ARR FD+T   ++V
Sbjct: 397 NALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAV 456

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W++MI+GY  NN+  E+L LFH+M   GV+    TL SVLSAC  L  L  G  +H + 
Sbjct: 457 CWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYF 516

Query: 331 CKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
               +I   V + +A++D Y+K G    A ++FS +   + I  NTMI  Y++ GR + A
Sbjct: 517 VVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQA 576

Query: 390 KHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVIS 444
            ++F  M N       I++ S++   S  G   E  + F NM  K  ++ ++   A ++ 
Sbjct: 577 INVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVD 636

Query: 445 ACANISSLELGEQVFARVTI 464
                  LE   ++ A + +
Sbjct: 637 LLGRTGLLEEAYKLIANMPM 656



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 210/474 (44%), Gaps = 55/474 (11%)

Query: 17  THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
            HHS+      HL  +K     +  P  N    + +   NPT  LL+ +     +C +  
Sbjct: 121 VHHSLRHKSPYHLEHIKPFSFTTNKPKWNSPTNVIIT--NPT--LLIME-----SCST-- 169

Query: 77  AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
                  +L   +  + L  ++      S  +     A +G+L  A T+FN + + N   
Sbjct: 170 -----MRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFM 224

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WN+MI  Y     AR+ +  F         R++ D+      + AC     +  G+ ++ 
Sbjct: 225 WNTMIRGYQN---ARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYC 281

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            +   G D + ++ + L++ Y + G   +A QV                           
Sbjct: 282 VVWKMGFDCELLVRNGLIHFYAERGLLKNARQV--------------------------- 314

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
               FD ++D   V W +MI GY +++   EA+ +F  M  + V  +  TL +V+SACS 
Sbjct: 315 ----FDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSD 370

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           +G LE GK+VH    +  +   + + +ALLD Y K     DA +LF  +   D     +M
Sbjct: 371 MGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSM 430

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           +  Y+ CG +E A+  F   P K+ + W++MI G SQN  P E+L LF  M +  +   +
Sbjct: 431 VNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIE 490

Query: 437 FSLASVISACANISSLELGE---QVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +L SV+SAC  ++ L LG+   Q F    II L     +  ++VD Y KCG I
Sbjct: 491 HTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSV--TLENAIVDMYAKCGSI 542



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 163/362 (45%), Gaps = 68/362 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C+   ++ +GK++H    +K  +  +L + N LL MY++C    DA  LFD M
Sbjct: 361 LIAVVSACSDMGNLEMGKRVHEKVEEKN-MRCSLSLHNALLDMYVKCDCLVDARELFDRM 419

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++ +SW +M+ G+ K G  E + + F+  P+KN   W+ +I+G+++  + K +  LF+
Sbjct: 420 ATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFH 479

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M  R  +                             +E        L +V+ AC  L  
Sbjct: 480 EMMERGVVP----------------------------IEH------TLVSVLSACGQLTC 505

Query: 188 LEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           L  G  IH + +V  +   SV L +++V++Y KCG  ++A +V + M E +    + +I+
Sbjct: 506 LNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIA 565

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GYA  G+   A  VFD                               +MR  G   +  T
Sbjct: 566 GYAANGRAKQAINVFD-------------------------------QMRNMGFEPNNIT 594

Query: 307 LASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
             S+L+ACS  G +  G++   +   K G+  +    + ++D   + G+  +A KL + +
Sbjct: 595 FVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANM 654

Query: 366 KV 367
            +
Sbjct: 655 PM 656



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 48/105 (45%)

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G +  A  IF  +   +   WN+MI G      PI A   F  M +L + MD  S    +
Sbjct: 205 GDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFAL 264

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            AC    ++  GE V+  V  +G D + ++   L+ FY + G +K
Sbjct: 265 KACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLK 309


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 214/447 (47%), Gaps = 37/447 (8%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G   H + LK G ++    I N +L MY + G    A  LF++M  R    WN+MI G  
Sbjct: 114 GNLFHAYVLKLGHIDDHF-IRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCW 172

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           K G++ +++ LFN+MP +N  +W  +++G+AK G+L++AR  F++MP R+ ++WN+M   
Sbjct: 173 KSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSA 232

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y +    +EA+ LF ++   L E +  D       I +C+ +        I   I    +
Sbjct: 233 YAQKECPKEALNLFHQM---LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHI 289

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMM-KEPDDFCLSALISGYANCGKMNDARRVFD 262
             +S + ++L++++ K G+   A  + + +  + +    + +IS Y   GK++ AR +FD
Sbjct: 290 VLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFD 349

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLE 321
                  V WNSMI+GY  N E   ++ LF +M     +  D  T+ASVLSAC  +G L+
Sbjct: 350 NMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALK 409

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
               V     +  +   +   ++L+  YSK G  +DA ++F  +   D +  NT+I+   
Sbjct: 410 LSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLIS--- 466

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                                       G + NG   EA+ L   M +  +  D  +   
Sbjct: 467 ----------------------------GFAANGHGKEAIKLVLTMEEEGIEPDHVTYIG 498

Query: 442 VISACANISSLELGEQVFARVTIIGLD 468
           V++AC++   L  G+ VF  +    +D
Sbjct: 499 VLTACSHAGLLNEGKNVFKSIQAPTVD 525



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 171/383 (44%), Gaps = 69/383 (18%)

Query: 55  GNPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNML 109
           G+PT A  +   + ++    N F   A+++   K G+ E +  +F+ +  Q+N  +WN++
Sbjct: 272 GDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIM 331

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           IS + + G+L  AR LF++MP+R+ ++WNSMI  Y +NG +  ++ LFKE+ S +   +Q
Sbjct: 332 ISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCM--DIQ 389

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D   +A+V+ AC  + AL+    +           D V      N+      FNS    
Sbjct: 390 PDEVTIASVLSACGHIGALKLSYWV----------LDIVREK---NIKLGISGFNS---- 432

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                         LI  Y+ CG + DA R+F        V +N++ISG+ +N    EA+
Sbjct: 433 --------------LIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAI 478

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG---------HACKV------G 334
            L   M   G+  D  T   VL+ACS  G L  GK V           +AC V      G
Sbjct: 479 KLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAG 538

Query: 335 VIDDVI-------------VASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            +D+               V  +LL+    + + G+   A     EL+  +      +  
Sbjct: 539 ELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSN 598

Query: 379 VYSSCGRIEDAKHIFRTMPNKSL 401
           +Y+S GR ED K +   M    L
Sbjct: 599 IYASFGRWEDVKRVREMMKKGGL 621



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 181/428 (42%), Gaps = 103/428 (24%)

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           ++F   P  +A  ++ M+  Y R G   + V LFK  +S     L+   F+   +I    
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHS---LNLRPQPFVYIYLIKL-- 109

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG------------------DFNS 225
              A + G   H+++L  G   D  + ++++++Y K G                  D+NS
Sbjct: 110 ---AGKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNS 166

Query: 226 -------------ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                        A  + NMM   +    +++++GYA  G +  ARR FD   + S V W
Sbjct: 167 MISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSW 226

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N+M S Y       EAL LFH+M   G+  D +T    +S+CSS+G              
Sbjct: 227 NAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG-------------- 272

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
                D  +A ++L    ++ +            V ++ +   ++ +++  G +E A++I
Sbjct: 273 -----DPTLADSILRMIDQKHI------------VLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 393 FRTM-PNKSLISW-------------------------------NSMIVGLSQNGSPIEA 420
           F  +   ++ ++W                               NSMI G +QNG    +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 421 LDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           ++LF  M + +D++ D+ ++ASV+SAC +I +L+L   V   V    +        SL+ 
Sbjct: 376 IELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIF 435

Query: 480 FYCKCGFI 487
            Y KCG +
Sbjct: 436 MYSKCGSV 443



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 31/198 (15%)

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGM---------------------------- 354
           G   H +  K+G IDD  + +A+LD Y+K G                             
Sbjct: 114 GNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWK 173

Query: 355 ---PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
               ++A  LF+ +   + I   +M+T Y+  G +E A+  F  MP +S++SWN+M    
Sbjct: 174 SGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAY 233

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +Q   P EAL+LF  M +  +  D  +    IS+C++I    L + +   +    +  + 
Sbjct: 234 AQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNS 293

Query: 472 IISTSLVDFYCKCGFIKM 489
            + T+L+D + K G +++
Sbjct: 294 FVKTALLDMHAKFGNLEI 311


>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
 gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
          Length = 870

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 241/505 (47%), Gaps = 85/505 (16%)

Query: 8   LARLLQSC---NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LA +L  C   + + +   GK++H + L+   L + + + N L+  Y+R G   +A LLF
Sbjct: 235 LANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLF 294

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN-----------------VMPQ------- 100
             M  R+  SWNA+I G+   G   K+L+LF+                 ++P        
Sbjct: 295 RRMELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNL 354

Query: 101 -----------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                            ++    N L+S +AK  +++ A   F  + RR+ I+WNSM+  
Sbjct: 355 HVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDA 414

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH-----I 198
            V +G+    + L + +   L E    D+  + +V+  C ++   +  K+ HS+     +
Sbjct: 415 LVESGYNTWFLELLRWM---LSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRL 471

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDA 257
           L +  D +  +G+++++ Y KCG+   A++V   + E  +     A+ISGY NCG +++A
Sbjct: 472 LASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISGYINCGLLDEA 531

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
              F+R   +   +WN M+  Y  N+  ++AL LFH+++ +G+  DA T+ S+L AC+ +
Sbjct: 532 YITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDAVTIMSLLPACAEM 591

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             ++  KQ HG+A +     D+ +  AL D Y+K G    A KLF               
Sbjct: 592 ASVQLIKQCHGYAIR-SCFGDLHLDGALQDVYAKCGSIGYAFKLF--------------- 635

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                           + +PNK LI + +MI G + +G   EAL  F +M +L ++ D  
Sbjct: 636 ----------------QLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHV 679

Query: 438 SLASVISACANISSLELGEQVFARV 462
            + +V+SAC++   ++ G  +F  +
Sbjct: 680 IITTVLSACSHAGLVDEGLNIFYSI 704



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 133/543 (24%), Positives = 231/543 (42%), Gaps = 120/543 (22%)

Query: 2   DTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R DY  +A +L+SC    +I  G+ LH   ++ G + S   ++  LL MY +CG   +
Sbjct: 19  DFRQDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHV-SCHAVSKALLNMYAKCGALDE 77

Query: 60  ALLLFDEMPR---RNCFSWNAMIEGFM-KLGHKEKSLQLFNVMPQKN------------- 102
           +  LF E+     R+   WN ++ G+     +  ++L+LF  M   N             
Sbjct: 78  SKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVL 137

Query: 103 ---------------------------DFSWNMLISGFAKAGEL-KTARTLFNDMPRRNA 134
                                        + N L+S +AK G + + A   F+ +  ++ 
Sbjct: 138 PVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDV 197

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA---DLAALEYG 191
           ++WN++I  +  N    +A RLF  +   L  +++ +   LA ++  CA   +  A  +G
Sbjct: 198 VSWNAIISGFAENNLMEDAFRLFSSM---LKGQIKPNYTTLANILPVCASFDEYIAYWFG 254

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K+IH ++L +                         N++L      D F  +AL+S Y   
Sbjct: 255 KEIHGYVLRH-------------------------NELL-----ADVFVWNALVSFYLRV 284

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASV 310
           G++ +A  +F R      V WN++I+GY SN E ++AL LFH++    ++E D+ TL  +
Sbjct: 285 GRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCI 344

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           + AC+    L  GK +HG+                               L   L   DT
Sbjct: 345 IPACAQSRNLHVGKMIHGYV------------------------------LRHPLLCEDT 374

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            + N +++ Y+ C  IE A   F  +  + LISWNSM+  L ++G     L+L   M   
Sbjct: 375 SVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSE 434

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFA-----RVTIIGLDSDQIISTSLVDFYCKCG 485
               D  ++ SV+  C N+   +  ++  +     R+     D +  I  +++D Y KCG
Sbjct: 435 GTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCG 494

Query: 486 FIK 488
            I+
Sbjct: 495 NIE 497



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 161/366 (43%), Gaps = 92/366 (25%)

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           AWN+MI                 + N D  +  Q     +A+++ +CA L+A+++G+ +H
Sbjct: 8   AWNTMI----------------SDCNGDFRQDYQA----VASILKSCAGLSAIKWGRALH 47

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             I+  G      +  +L+N+Y K                               CG ++
Sbjct: 48  GSIVRIGHVSCHAVSKALLNMYAK-------------------------------CGALD 76

Query: 256 DARRVFDRT---TDTSSVMWNSMISGYI-SNNEDTEALLLFHKMRRNGVLEDAS-TLASV 310
           +++++F       D   + WN ++SGY  S   D E L LF +M      + +S T A V
Sbjct: 77  ESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIV 136

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L  C+ LG +  G+ V+ +A K G           LDT++  G                 
Sbjct: 137 LPVCARLGDVYMGRSVNCYAIKSG-----------LDTHTLAG----------------- 168

Query: 371 ILLNTMITVYSSCGRI-EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
              N ++++Y+ CG + +DA   F ++  K ++SWN++I G ++N    +A  LF +M K
Sbjct: 169 ---NALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLK 225

Query: 430 LDLRMDKFSLASVISACANIS---SLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKCG 485
             ++ +  +LA+++  CA+     +   G+++   V     L +D  +  +LV FY + G
Sbjct: 226 GQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVG 285

Query: 486 FIKMDE 491
            ++  E
Sbjct: 286 RVEEAE 291



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 34/195 (17%)

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
           +D   +AS+L +C+ L  ++ G+ +HG   ++G +    V+ ALL+ Y+K G   ++ KL
Sbjct: 22  QDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKL 81

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI--- 418
           F E+                  G   D   IF          WN ++ G +  GS +   
Sbjct: 82  FGEI------------------GSCNDRDPIF----------WNILLSGYA--GSRVYDA 111

Query: 419 EALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
           E L LF  M+  +  +    + A V+  CA +  + +G  V       GLD+  +   +L
Sbjct: 112 ETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNAL 171

Query: 478 VDFYCKCGFIKMDEY 492
           V  Y KCG +  D Y
Sbjct: 172 VSMYAKCGLVCQDAY 186


>gi|302807080|ref|XP_002985271.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
 gi|300147099|gb|EFJ13765.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
          Length = 744

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 231/525 (44%), Gaps = 103/525 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  +I +GK +H   +  G+L   + + N ++ MY +CG    A  +F+ M  +
Sbjct: 64  VLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAK 123

Query: 71  NCFSWNAMI----------EGFMKLGH------KEKSLQLFNVMP--------------- 99
           N  +WN MI          E F  LG       +   + L +V+                
Sbjct: 124 NTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGRIVH 183

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + ++   N L++ + K G+L+ AR     +  R+ I+W +++  Y R+G  +
Sbjct: 184 EIVAGEGLESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGK 243

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ + K ++    E ++ D+F    ++ +C  +AAL  G++IH  +  +G++ D VL +
Sbjct: 244 RAIAVIKRMDH---EGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQT 300

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV- 270
           +LV++YGK                               CG  + ARR FDR  D   V 
Sbjct: 301 ALVDMYGK-------------------------------CGNPDAARRAFDRMRDVRDVT 329

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +WN++++ Y+  ++  E L +F +M   GV  DA T  S+L AC+SL  L  G+  H   
Sbjct: 330 VWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRM 389

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            + G+ D   VASA                          +L  ++I +Y+ CG + DAK
Sbjct: 390 LERGLFDRQAVASA-------------------------DLLTTSVINMYAKCGSLADAK 424

Query: 391 HIF---RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
             F   R      +++W++M+   SQ G   EAL  F +M +  ++ D  S  S I+ C+
Sbjct: 425 AEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCS 484

Query: 448 NISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +   +      F  +    G+   +     LVD   + G+I+  E
Sbjct: 485 HSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAE 529



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 203/482 (42%), Gaps = 110/482 (22%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFS 105
           MY RCG+   A   FD M  RN  SW+AMI  + + GH   +L+LF  M  +    N  +
Sbjct: 1   MYNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAIT 60

Query: 106 W------------------------------------NMLISGFAKAGELKTARTLFNDM 129
           +                                    N +++ + K GE+  AR +F  M
Sbjct: 61  FVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERM 120

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
             +N + WN+MI    R+   +EA  L  E++ D    L+ +   L +VI ACA + ++ 
Sbjct: 121 EAKNTVTWNTMIAACSRHDRYKEAFALLGEMDLD---GLRPNKITLVSVIDACAWMQSIS 177

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G+ +H  +   GL+ D+ + ++LVNLYGK                              
Sbjct: 178 RGRIVHEIVAGEGLESDNAVANALVNLYGK------------------------------ 207

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CGK+  AR   +       + W ++++ Y  +     A+ +  +M   GV  D+ T  +
Sbjct: 208 -CGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVN 266

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L +C ++  L  G+++H    + G+  D ++ +AL+D Y K G P  A + F       
Sbjct: 267 LLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFD------ 320

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                          R+ D + +           WN+++          E L +F  M+ 
Sbjct: 321 ---------------RMRDVRDV---------TVWNALLAAYVLRDQGKETLGIFARMSL 356

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCK 483
             +  D  +  S++ ACA++++L LG    +R+   GL       S  +++TS+++ Y K
Sbjct: 357 QGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAK 416

Query: 484 CG 485
           CG
Sbjct: 417 CG 418



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 30/247 (12%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y  CG +  ARR FD     + V W++MI+ Y       +AL LF +M   GV  +A T 
Sbjct: 2   YNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAITF 61

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SVL AC+SLG +  GK +H          + IVA  LL                     
Sbjct: 62  VSVLDACASLGAIALGKSIH----------ERIVADGLLGD------------------- 92

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D IL NT++ +Y  CG ++ A+ +F  M  K+ ++WN+MI   S++    EA  L   M
Sbjct: 93  -DVILGNTIVNMYGKCGEVDLAREVFERMEAKNTVTWNTMIAACSRHDRYKEAFALLGEM 151

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +   LR +K +L SVI ACA + S+  G  V   V   GL+SD  ++ +LV+ Y KCG +
Sbjct: 152 DLDGLRPNKITLVSVIDACAWMQSISRGRIVHEIVAGEGLESDNAVANALVNLYGKCGKL 211

Query: 488 KMDEYYL 494
           +   + L
Sbjct: 212 RAARHAL 218



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 158/401 (39%), Gaps = 92/401 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C    SI  G+ +H     +G L S   +AN L+ +Y +CG    A    + +
Sbjct: 163 LVSVIDACAWMQSISRGRIVHEIVAGEG-LESDNAVANALVNLYGKCGKLRAARHALEGI 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             R+  SW  ++  + + GH ++++ +   M  +    + F++                 
Sbjct: 222 ETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGE 281

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPR-RNAIAWNSMIHCYVRN 147
                               L+  + K G    AR  F+ M   R+   WN+++  YV  
Sbjct: 282 EIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLR 341

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD- 206
              +E + +F  ++   ++ +  DA    +++ ACA LAAL  G+  HS +L  GL FD 
Sbjct: 342 DQGKETLGIFARMS---LQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGL-FDR 397

Query: 207 ------SVLGSSLVNLYGKCGDFNSANQVL---NMMKEPDDFCLSALISGYANCGKMNDA 257
                  +L +S++N+Y KCG    A          +  D    SA+++ Y+  G   +A
Sbjct: 398 QAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEA 457

Query: 258 RRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR----------------- 296
            R F           SV + S I+G   +    EA+  F  +R                 
Sbjct: 458 LRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVD 517

Query: 297 ---RNGVLEDA-------------STLASVLSACSSLGFLE 321
              R G + +A             ST  ++LSAC + G LE
Sbjct: 518 LLSRAGWIREAEALMRRAPLGAHHSTWMTLLSACRTYGDLE 558



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y+ CG +  A+  F  M  ++++SW++MI   +Q G P +AL+LF  M+   ++ +  +
Sbjct: 1   MYNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAIT 60

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQII-STSLVDFYCKCGFIKM 489
             SV+ ACA++ ++ LG+ +  R+   GL  D +I   ++V+ Y KCG + +
Sbjct: 61  FVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDL 112


>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 655

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/529 (26%), Positives = 251/529 (47%), Gaps = 84/529 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PR 69
           LL+ C +    H+   +H   + +G+L+     +  L+  Y+    P+ AL L   + P 
Sbjct: 47  LLKQCKSIFQSHL---IHQQAIVQGLLSH---FSLNLISTYLALNAPSHALSLLQCLTPS 100

Query: 70  RNC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
            +  + WNA+I   ++LG  + SL LF  M +                            
Sbjct: 101 PSAVYWWNALIRRAVRLGLLQHSLSLFRTMRRLNWSPDHYTFPFVFKACGELPSFLHGSC 160

Query: 101 -----------KNDFSWNMLISGFAKAGELKTARTLFNDM---PRRNAIAWNSMIHCYVR 146
                       N F  N +++ + + G    AR +F+++      + ++WNSMI  Y++
Sbjct: 161 IHAIVCSTGFDSNVFVCNAVVAMYGRCGASSYARQMFDELLMGEVFDLVSWNSMIAVYLQ 220

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G  +  + LF+ +       +  DA  L  V+ ACA +     GKQ+H   +  GL  D
Sbjct: 221 SGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWLCGKQVHGFAIRYGLFED 280

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + +SLV++Y KCG    AN+V + M+  D    +A+++GY+  GK  DA  +F++  +
Sbjct: 281 VFVANSLVDMYAKCGLMCIANKVFDRMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKMRE 340

Query: 267 TS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                  V W+++I+GY       EAL +F +M+  G+  +  TL S+LS C+S+G L H
Sbjct: 341 EKIQLDVVSWSAVIAGYAQRGLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALLH 400

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK+ H ++ K  +  D             R  P D           + +++N +I +Y+ 
Sbjct: 401 GKETHCYSIKCVLNFD-------------RSDPRD-----------ELLVVNAIIDMYTK 436

Query: 383 CGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKL---DLRMDKF 437
           C  I   + IF ++P K  ++++W +MI G +Q+G   +AL+LF  M K     ++ + F
Sbjct: 437 CKDINVGRAIFNSIPPKDRNVVTWTAMIGGYAQHGEANDALELFSQMLKQYNRSVKPNAF 496

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
           +++  + ACA +++L  G Q+ A V     D D + ++  L+D Y K G
Sbjct: 497 TISCALMACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKSG 545



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 199/466 (42%), Gaps = 108/466 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C +      GKQ+H   ++ G+      +AN L+ MY +CG    A  +FD M
Sbjct: 249 LVNVLPACASMGDWLCGKQVHGFAIRYGLFEDVF-VANSLVDMYAKCGLMCIANKVFDRM 307

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             ++  SWNAM+ G+ ++G  E +L LF  M ++    +  SW+ +I+G+A+        
Sbjct: 308 QHKDVVSWNAMVTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQ-------- 359

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
                                   G   EA+ +F+++    V  L+ +   L +++  CA
Sbjct: 360 -----------------------RGLGYEALNVFRQMQ---VCGLRPNEVTLVSLLSGCA 393

Query: 184 DLAALEYGKQIHSHILVNGLDFDS-------VLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            + AL +GK+ H + +   L+FD        ++ ++++++Y KC D N    + N +   
Sbjct: 394 SVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCKDINVGRAIFNSIPPK 453

Query: 237 DD--FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           D      +A+I GYA  G+ NDA  +F +                              K
Sbjct: 454 DRNVVTWTAMIGGYAQHGEANDALELFSQML----------------------------K 485

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRG 353
                V  +A T++  L AC+ L  L  G+Q+H    +     DV+ VA+ L+D YSK  
Sbjct: 486 QYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKS- 544

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                         G ++ A+ +F  M +++ +SW S++ G   
Sbjct: 545 ------------------------------GDMDAARLVFDNMKHRNTVSWTSLMTGYGM 574

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +G   EA+ +F  M +  L  D  +   V+ AC++   ++ G + F
Sbjct: 575 HGHGEEAIKVFDEMRREGLVSDGITFLVVLYACSHSGMVDEGIKYF 620



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 106/249 (42%), Gaps = 33/249 (13%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVM--WNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           LIS Y      + A  +    T + S +  WN++I   +       +L LF  MRR    
Sbjct: 77  LISTYLALNAPSHALSLLQCLTPSPSAVYWWNALIRRAVRLGLLQHSLSLFRTMRRLNWS 136

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T   V  AC  L    HG  +H   C  G   +V V +A++  Y + G  S A ++
Sbjct: 137 PDHYTFPFVFKACGELPSFLHGSCIHAIVCSTGFDSNVFVCNAVVAMYGRCGASSYARQM 196

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F EL +                G + D            L+SWNSMI    Q+G     +
Sbjct: 197 FDELLM----------------GEVFD------------LVSWNSMIAVYLQSGDLKSGI 228

Query: 422 DLFCNMNKL---DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           +LF  M K+   D+  D  SL +V+ ACA++     G+QV       GL  D  ++ SLV
Sbjct: 229 ELFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWLCGKQVHGFAIRYGLFEDVFVANSLV 288

Query: 479 DFYCKCGFI 487
           D Y KCG +
Sbjct: 289 DMYAKCGLM 297



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 4/122 (3%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++  G+Q+H   L+       L +AN L+ MY + G+   A L+FD M  RN
Sbjct: 502 LMACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKSGDMDAARLVFDNMKHRN 561

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
             SW +++ G+   GH E+++++F+ M ++    +  ++ +++   + +G +      F+
Sbjct: 562 TVSWTSLMTGYGMHGHGEEAIKVFDEMRREGLVSDGITFLVVLYACSHSGMVDEGIKYFH 621

Query: 128 DM 129
           DM
Sbjct: 622 DM 623


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/572 (25%), Positives = 252/572 (44%), Gaps = 127/572 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C     + +G+ +H + L+ G+ +S   +A  L+  Y+R  +     LLFD M
Sbjct: 164 MVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLM 222

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND--------------------- 103
             RN  SWNAMI G+  +G   K+L+LF  M     K D                     
Sbjct: 223 VVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGK 282

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          +  N L++ ++  G L+++  LF  +P R+A  WNSMI  Y   G
Sbjct: 283 QIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFG 342

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA-LEYGKQIHSHILVNGLDFDS 207
              EA+ LF  + S+ V++   D   +  ++  C +LA+ L  GK +H+H++ +G+  D+
Sbjct: 343 CHEEAMDLFIRMQSEGVKK---DERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDA 399

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            LG++L+++Y +                              NC  +   +++FDR    
Sbjct: 400 SLGNALLSMYTEL-----------------------------NC--VESVQKIFDRMKGV 428

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             + WN+MI     N    +A  LF +MR + +  ++ T+ S+L+AC  +  L+ G+ +H
Sbjct: 429 DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIH 488

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS------------------------ 363
           G+  K  +  +  + +AL D Y   G  + A  LF                         
Sbjct: 489 GYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIXKAEPNSVTI 548

Query: 364 -----------------ELKVY----------DTILLNTMITVYSSCGRIEDAKHIFRTM 396
                             L  Y          D  L N  IT+Y+ CG ++ A++IF+T+
Sbjct: 549 INVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTL 608

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P +++ISWN+MI G   NG   +A+  F  M +   R +  +  SV+SAC++   +E+G 
Sbjct: 609 PKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGL 668

Query: 457 QVF-ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           Q+F + V    +  + +  + +VD   + G I
Sbjct: 669 QLFHSMVQDFNVTPELVHYSCIVDLLARGGCI 700



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 234/519 (45%), Gaps = 108/519 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C   +++  GK +H       +++  + +   ++  Y +CG   DA  +FD M
Sbjct: 63  LPLVLKACAAQNAVERGKSIHRSIQGTDLMDD-VRVGTAVVDFYCKCGFVEDARCVFDAM 121

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTAR 123
             R+   WNAM+ G++  G  E+++ L   M ++N      +   L+     A EL+  R
Sbjct: 122 SDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 181

Query: 124 T-----------------------------------LFNDMPRRNAIAWNSMIHCYVRNG 148
                                               LF+ M  RN ++WN+MI  Y   G
Sbjct: 182 GVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVG 241

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ LF ++   LV+ ++ D   +   + ACA+L +L+ GKQIH       + F+ V
Sbjct: 242 DYFKALELFVQM---LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQL----AIKFEFV 294

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                       D + L+AL++ Y+N G +  + ++F+   +  
Sbjct: 295 ---------------------------EDLYILNALLNMYSNNGSLESSHQLFESVPNRD 327

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL--GFLEHGKQV 326
           + +WNSMIS Y +     EA+ LF +M+  GV +D  T+  +LS C  L  G L+ GK +
Sbjct: 328 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLK-GKSL 386

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H H  K G+  D  + +ALL  Y++                     LN           +
Sbjct: 387 HAHVIKSGMRIDASLGNALLSMYTE---------------------LNC----------V 415

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           E  + IF  M    +ISWN+MI+ L++N    +A +LF  M + +++ + +++ S+++AC
Sbjct: 416 ESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAAC 475

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +++ L+ G  +   V    ++ +Q + T+L D Y  CG
Sbjct: 476 EDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG 514



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 201/473 (42%), Gaps = 100/473 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +Q+C    S+ +GKQ+H   +K   +   L I N LL MY   G+   +  LF+ +P R+
Sbjct: 269 VQACAELGSLKLGKQIHQLAIKFEFVED-LYILNALLNMYSNNGSLESSHQLFESVPNRD 327

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----------------------------- 102
              WN+MI  +   G  E+++ LF  M  +                              
Sbjct: 328 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLH 387

Query: 103 ----------DFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     D S  N L+S + +   +++ + +F+ M   + I+WN+MI    RN    
Sbjct: 388 AHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRA 447

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A  LF+ +       ++ +++ + +++ AC D+  L++G+ IH +++ + ++ +  L +
Sbjct: 448 QACELFERMRE---SEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRT 504

Query: 212 SLVNLYGKCGDFNSANQVL-----------NMM---KEPDDFCL---------------- 241
           +L ++Y  CGD  +A  +            N M    EP+   +                
Sbjct: 505 ALADMYMNCGDEATARDLFEGCPDRDLISWNAMIXKAEPNSVTIINVLSSFTHLATLPQG 564

Query: 242 ---------------------SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                +A I+ YA CG +  A  +F      + + WN+MI+GY 
Sbjct: 565 QSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYG 624

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDV 339
            N   ++A+L F +M  +G   +  T  SVLSACS  GF+E G Q+ H       V  ++
Sbjct: 625 MNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPEL 684

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKH 391
           +  S ++D  ++ G   +A +    + +  D  +   ++   SSC    DAK 
Sbjct: 685 VHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALL---SSCRAYSDAKQ 734



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 139/315 (44%), Gaps = 64/315 (20%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           L  V+ ACA   A+E GK IH  I    L  D  +G+++V+ Y KC              
Sbjct: 63  LPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKC-------------- 108

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                            G + DAR VFD  +D   V+WN+M+ GY+      EA+LL  +
Sbjct: 109 -----------------GFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVRE 151

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRG 353
           M R  +  ++ T+ ++L AC     L  G+ VHG+  + G+ D +  VA+AL+  Y +  
Sbjct: 152 MGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLR-- 209

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                         +D  +L  +                F  M  ++++SWN+MI G   
Sbjct: 210 --------------FDMRVLPLL----------------FDLMVVRNIVSWNAMISGYYD 239

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
            G   +AL+LF  M   +++ D  ++   + ACA + SL+LG+Q+           D  I
Sbjct: 240 VGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYI 299

Query: 474 STSLVDFYCKCGFIK 488
             +L++ Y   G ++
Sbjct: 300 LNALLNMYSNNGSLE 314



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 32/213 (15%)

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNS+I    +   D   L  + +M   GVL + +TL  VL AC++   +E GK +H    
Sbjct: 28  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 87

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
              ++DDV V +A++D Y K G   DA  +F  +   D +L N M+  Y   G  E+A  
Sbjct: 88  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 147

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           + R                                M + +LR +  ++ +++ AC   S 
Sbjct: 148 LVR-------------------------------EMGRENLRPNSRTMVALLLACEGASE 176

Query: 452 LELGEQVFARVTIIGL-DSDQIISTSLVDFYCK 483
           L LG  V       G+ DS+  ++T+L+ FY +
Sbjct: 177 LRLGRGVHGYCLRNGMFDSNPHVATALIGFYLR 209



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 44/204 (21%)

Query: 24  GKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           G+ LH +  ++G  L   L +AN  + MY RCG+   A  +F  +P+RN  SWNAMI G+
Sbjct: 564 GQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGY 623

Query: 83  -----------------------------------MKLGHKEKSLQLFNVMPQKNDFS-- 105
                                                 G  E  LQLF+ M Q  + +  
Sbjct: 624 GMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPE 683

Query: 106 ---WNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
              ++ ++   A+ G +  AR   + MP   +A  W +++        A++A  +F++L 
Sbjct: 684 LVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKL- 742

Query: 162 SDLVERLQCDAFILATVIGACADL 185
            D +E +    ++L + + A A L
Sbjct: 743 -DKLEPMNAGNYVLLSNVYATAGL 765



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
           +I+D KH            WNS+I   +   +    L  +  M  L +  +  +L  V+ 
Sbjct: 21  QIKDPKH------------WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLK 68

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ACA  +++E G+ +   +    L  D  + T++VDFYCKCGF++
Sbjct: 69  ACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVE 112


>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/519 (24%), Positives = 230/519 (44%), Gaps = 105/519 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C       +G+QLH    K G    T  + N L+ +Y R GN   A  +F ++
Sbjct: 293 FSSVLSACAKIELFDIGEQLHALVFKCGFFLETY-VCNALVTLYSRLGNFISAQQVFSKI 351

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ--------------------- 100
             ++  S+N++I G  + G  +++L+LF  M      P                      
Sbjct: 352 KCKDEVSYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGE 411

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K     +++I G     + K  ++ TA   F      N + WN M+  Y +  
Sbjct: 412 QLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQLD 471

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              ++  +F+++    +E L  + F   +++  C    AL+ G+QIHS  +  G +F+  
Sbjct: 472 NLSKSFCIFRQMQ---IEGLIPNQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVY 528

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S L+++Y K                                GK++ AR +  R  +  
Sbjct: 529 VCSVLIDMYAKL-------------------------------GKLDIARGILRRLNEED 557

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W ++I+GY  ++  TEAL LF +M   G+  D    +S +SAC+ +  L  G+Q+H 
Sbjct: 558 VVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHA 617

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            +   G  +D+ + +AL                               +++Y+ CGRI++
Sbjct: 618 QSYISGYSEDLSIGNAL-------------------------------VSLYARCGRIQE 646

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  +  K  ISWN+++ G +Q+G   EAL +F  M + +++   F+  S +SA AN
Sbjct: 647 ANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAAN 706

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +++++ G+Q+ A +   G DS+  +S +L+  Y KCG I
Sbjct: 707 MANIKQGKQIHAMIMKTGFDSEIEVSNALITLYAKCGCI 745



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 234/520 (45%), Gaps = 108/520 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C    S    K+LH   LK G    ++ + ++L++ Y   G+    + +FD+MP R
Sbjct: 93  LLDFCLNSASFLDCKKLHSKILKIGFDKESV-LCDKLIEFYFAVGDLNSVVKVFDDMPSR 151

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------------- 102
           +  +WN ++ G +      + L LF  M ++N                            
Sbjct: 152 SLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQI 211

Query: 103 ------------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                         + N LI  +AK G +++AR +F+++  +++++W ++I  Y +NGF 
Sbjct: 212 HASIISRGLGTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFG 271

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+RLF E++   +  L    ++ ++V+ ACA +   + G+Q+H+ +   G   ++ + 
Sbjct: 272 EEAIRLFCEMH---ISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYVC 328

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV LY + G+F SA                               ++VF +      V
Sbjct: 329 NALVTLYSRLGNFISA-------------------------------QQVFSKIKCKDEV 357

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            +NS+ISG         AL LF KM+ + +  D  T+AS+LSAC+S+  L  G+Q+H +A
Sbjct: 358 SYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYA 417

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  D+I+  +LLD Y K    + A K F+  +  + +L N M+  Y     +  + 
Sbjct: 418 IKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSF 477

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            IFR M  + LI                                ++F+  S++  C +  
Sbjct: 478 CIFRQMQIEGLIP-------------------------------NQFTYPSILRTCTSFG 506

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           +L+LGEQ+ ++    G + +  + + L+D Y K G  K+D
Sbjct: 507 ALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLG--KLD 544



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 219/505 (43%), Gaps = 110/505 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +  S+  G+QLH + +K G+    + I   LL +Y++C + T A   F   
Sbjct: 394 VASLLSACASIKSLSKGEQLHSYAIKAGMCLDII-IEGSLLDLYVKCSDITTAHKFFATT 452

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------------PQ--------------- 100
              N   WN M+  + +L +  KS  +F  M            P                
Sbjct: 453 QTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTCTSFGALDLGE 512

Query: 101 -------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K  F +N+     LI  +AK G+L  AR +   +   + ++W ++I  Y ++ 
Sbjct: 513 QIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAGYTQHD 572

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF E+   L   +Q D    ++ I ACA + AL  G+QIH+   ++G   D  
Sbjct: 573 LFTEALNLFDEM---LNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYISGYSEDLS 629

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV+LY                               A CG++ +A   F++     
Sbjct: 630 IGNALVSLY-------------------------------ARCGRIQEANLAFEKIDAKD 658

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           S+ WN+++SG+  +    EAL +F +M R  +     T  S +SA +++  ++ GKQ+H 
Sbjct: 659 SISWNALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHA 718

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   ++ V++AL+  Y+K G    A + F E+   + I  N MIT          
Sbjct: 719 MIMKTGFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMIT---------- 768

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                G SQ+G  IEA++LF  M ++  + +  +   VISAC++
Sbjct: 769 ---------------------GYSQHGCGIEAVNLFQKMKQVGAKPNHVTFVGVISACSH 807

Query: 449 ISSLELGEQVFARVT-----IIGLD 468
           +  +  G   F  ++     IIGL+
Sbjct: 808 VGLVNEGLAYFESMSKEHGLIIGLE 832



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 131/315 (41%), Gaps = 66/315 (20%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C + A+    K++HS IL  G D +SVL   L+  Y   GD NS                
Sbjct: 97  CLNSASFLDCKKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSV--------------- 141

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                            +VFD     S + WN ++SG ++N      L LF +M    V 
Sbjct: 142 ----------------VKVFDDMPSRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVN 185

Query: 302 EDASTLASVLSACSS--LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
            +  T+ASVL A  S  + F  + +Q+H      G+                 G  S AC
Sbjct: 186 PNEVTVASVLRAYGSGNVAFY-YVEQIHASIISRGL-----------------GTSSIAC 227

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                         N +I +Y+  G I  A+ +F  +  K  +SW ++I   SQNG   E
Sbjct: 228 --------------NPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEE 273

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           A+ LFC M+   L    +  +SV+SACA I   ++GEQ+ A V   G   +  +  +LV 
Sbjct: 274 AIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVT 333

Query: 480 FYCKCG-FIKMDEYY 493
            Y + G FI   + +
Sbjct: 334 LYSRLGNFISAQQVF 348


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 232/518 (44%), Gaps = 106/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +  SC       +G Q+  H ++ G  +S + +AN L+ M+    +  +A  +FD M
Sbjct: 300 FATVTSSCGLLEDQVLGYQVLGHIIQYGFEDS-VSVANSLISMFSSFSSVEEACYVFDHM 358

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------KNDFSW-- 106
              +  SWNAMI  +   G   +SL+ F+ M                      ++  W  
Sbjct: 359 NECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR 418

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ +++AG  + A  +F  M  R+ I+WNSM+ CYV++G
Sbjct: 419 GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDG 478

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              + +++  EL   L      +    A+ + AC++   L   K +H+ I+V G     +
Sbjct: 479 KCLDGLKILAEL---LQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLI 535

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV +YGK G          MM E                     A++V        
Sbjct: 536 VGNALVTMYGKLG----------MMME---------------------AKKVLQTMPQPD 564

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVH 327
            V WN++I G+  N E  EA+  +  +R  G+  +  T+ SVL ACS+    L+HG  +H
Sbjct: 565 RVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIH 624

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            H         +++     D Y K                      N++IT+Y+ CG + 
Sbjct: 625 AH---------IVLTGFESDDYVK----------------------NSLITMYAKCGDLN 653

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            + +IF  + NKS I+WN+M+   + +G   EAL +F  M  + + +D+FS +  ++A A
Sbjct: 654 SSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATA 713

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           N++ LE G+Q+   V  +G +SD  ++ + +D Y KCG
Sbjct: 714 NLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 751



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 216/487 (44%), Gaps = 109/487 (22%)

Query: 76  NAMIEGFMKLGHK--EKSLQLFNVMPQKN--DFSWNMLISGFAKAGELKTARTLFNDMPR 131
           N  ++GF ++  +   K+L  F ++   N   F  N LI+ ++K G ++ AR +F++M  
Sbjct: 98  NFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRH 157

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL-EY 190
           RN  +W++M+  YVR G   EAV LF ++    VE    + F++A++I AC+    + + 
Sbjct: 158 RNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP---NGFMVASLITACSRSGYMADE 214

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G Q+H  ++  G+  D  +G++LV+ YG                               +
Sbjct: 215 GFQVHGFVVKTGILGDVYVGTALVHFYG-------------------------------S 243

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + +A+++F+   D + V W S++ GY  +    E L ++ +MR+ GV  + +T A+V
Sbjct: 244 IGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATV 303

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVID-------------------------------DV 339
            S+C  L     G QV GH  + G  D                               D+
Sbjct: 304 TSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDI 363

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVY------------------------------- 368
           I  +A++  Y+  G+  ++ + F  ++                                 
Sbjct: 364 ISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGL 423

Query: 369 --------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                   +  + NT++T+YS  GR EDA+ +F+ M  + LISWNSM+    Q+G  ++ 
Sbjct: 424 VVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDG 483

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L +   + ++   M+  + AS ++AC+N   L   + V A + + G     I+  +LV  
Sbjct: 484 LKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTM 543

Query: 481 YCKCGFI 487
           Y K G +
Sbjct: 544 YGKLGMM 550



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 204/465 (43%), Gaps = 110/465 (23%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +K G L+S + I N LL +Y   G   DA L+F  M  R+  SWN+M+  ++
Sbjct: 417 GRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYV 475

Query: 84  KLGH-------KEKSLQLFNVM--------------PQ----------------KNDF-- 104
           + G          + LQ+  VM              P+                 +DF  
Sbjct: 476 QDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLI 535

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L++ + K G +  A+ +   MP+ + + WN++I  +  N    EAV+ +K +    
Sbjct: 536 VGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIRE-- 593

Query: 165 VERLQCDAFILATVIGACA---DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            + +  +   + +V+GAC+   DL  L++G  IH+HI++ G                   
Sbjct: 594 -KGIPANYITMVSVLGACSAPDDL--LKHGMPIHAHIVLTGF------------------ 632

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                        E DD+  ++LI+ YA CG +N +  +FD   + S + WN+M++    
Sbjct: 633 -------------ESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAH 679

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           +    EAL +F +MR  GV  D  + +  L+A ++L  LE G+Q+HG   K+G   D+ V
Sbjct: 680 HGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHV 739

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +A +D Y K                               CG + D   +     N+S 
Sbjct: 740 TNAAMDMYGK-------------------------------CGEMHDVLKMLPQPINRSR 768

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           +SWN +I   +++G   +A + F  M KL  + D  +  S++SAC
Sbjct: 769 LSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSAC 813



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/526 (23%), Positives = 219/526 (41%), Gaps = 107/526 (20%)

Query: 8   LARLLQSCN-THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A L+ +C+ + +    G Q+H   +K GIL     +   L+  Y   G   +A  LF+E
Sbjct: 198 VASLITACSRSGYMADEGFQVHGFVVKTGILGDVY-VGTALVHFYGSIGLVYNAQKLFEE 256

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSW-------------- 106
           MP  N  SW +++ G+   G+  + L ++  M Q      +N F+               
Sbjct: 257 MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLG 316

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N LIS F+    ++ A  +F+ M   + I+WN+MI  Y  +
Sbjct: 317 YQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHH 376

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G  RE++R F  +   L              + +  D   L++G+ IH  ++  GLD + 
Sbjct: 377 GLCRESLRCFHWMR-HLHNETNSTTLSSLLSVCSSVD--NLKWGRGIHGLVVKLGLDSNV 433

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++L+ LY                               +  G+  DA  VF   T+ 
Sbjct: 434 CICNTLLTLY-------------------------------SEAGRSEDAELVFQAMTER 462

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             + WNSM++ Y+ + +  + L +  ++ + G + +  T AS L+ACS+   L   K VH
Sbjct: 463 DLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVH 522

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
                 G  D +IV +AL                               +T+Y   G + 
Sbjct: 523 ALIIVAGFHDFLIVGNAL-------------------------------VTMYGKLGMMM 551

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           +AK + +TMP    ++WN++I G ++N  P EA+  +  + +  +  +  ++ SV+ AC+
Sbjct: 552 EAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611

Query: 448 NISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
               L + G  + A + + G +SD  +  SL+  Y KCG +    Y
Sbjct: 612 APDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNY 657


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/523 (26%), Positives = 233/523 (44%), Gaps = 111/523 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKK------GILNSTLPIANRLLQMYMRCGNPTDALL 62
           A L+ +C+   S+  G+++H H +          L     + N L+ MY RC  P  A  
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQ 107

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----------------- 105
           +FDEMP RN  SW ++I   ++ G    +L LF+ M +    +                 
Sbjct: 108 VFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGD 167

Query: 106 ----------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N L++ ++K G +     LF  +  ++ I+W S+I  
Sbjct: 168 VGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAG 227

Query: 144 YVRNGFAREAVRLFKELNSDLVE-RLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
           + + GF  EA+++F+++   +VE     + F   +   AC  + + EYG+QIH   +   
Sbjct: 228 FAQQGFEMEALQVFRKM---IVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR 284

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           LD D  +G SL ++Y +  + +SA      ++ PD      L+S                
Sbjct: 285 LDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPD------LVS---------------- 322

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                    WNS+++ Y      +EAL+LF +MR +G+  D  T+  +L AC     L H
Sbjct: 323 ---------WNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH 373

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+ +H +  K+G+  DV V ++LL  Y++    S A  +F E+K                
Sbjct: 374 GRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK---------------- 417

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                          ++ +++WNS++   +Q+  P E L LF  +NK +  +D+ SL +V
Sbjct: 418 ---------------DQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNV 462

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +SA A +   E+ +QV A     GL  D+++S +L+D Y KCG
Sbjct: 463 LSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCG 505



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 221/489 (45%), Gaps = 107/489 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     +  G+Q+H H LK     S L + N L+ MY + G   D  +LF+ +
Sbjct: 155 LGSAVRACTELGDVGTGRQVHAHALKSE-RGSDLIVQNALVTMYSKNGLVDDGFMLFERI 213

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDF-------------SWNM- 108
             ++  SW ++I GF + G + ++LQ+F  M        N+F             SW   
Sbjct: 214 KDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYG 273

Query: 109 ---------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                L   +A+   L +AR  F  +   + ++WNS+++ Y   
Sbjct: 274 EQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVE 333

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ LF E+       L+ D   +  ++ AC    AL +G+ IHS+++  GLD D 
Sbjct: 334 GLLSEALVLFSEMRD---SGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDV 390

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + +SL+++Y +C D +SA  V + +K+ D                              
Sbjct: 391 SVCNSLLSMYARCSDLSSAMDVFHEIKDQD------------------------------ 420

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V WNS+++    +N   E L LF  + ++    D  +L +VLSA + LG+ E  KQVH
Sbjct: 421 -VVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVH 479

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +A K G++DD ++++ L+DTY+K                               CG ++
Sbjct: 480 AYAFKAGLVDDRMLSNTLIDTYAK-------------------------------CGSLD 508

Query: 388 DAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           DA  +F  M  N+ + SW+S+IVG +Q G   EALDLF  M  L +R +  +   V++AC
Sbjct: 509 DAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTAC 568

Query: 447 ANISSLELG 455
           + +  +  G
Sbjct: 569 SRVGFVNEG 577



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 24/180 (13%)

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A+++SACS L  L  G++VH H          +VAS+           S   +L      
Sbjct: 48  AALVSACSRLRSLPQGRRVHRH----------LVASS---------SSSPDAQLAG---- 84

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            +T+L N +IT+Y  C   + A+ +F  MP ++ +SW S+I    QNG   +AL LF +M
Sbjct: 85  -NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSM 143

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +     D+F+L S + AC  +  +  G QV A        SD I+  +LV  Y K G +
Sbjct: 144 LRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLV 203



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 24/223 (10%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFM 83
           KQ+H +  K G+++  + ++N L+  Y +CG+  DA+ LF+ M   R+ FSW+++I G+ 
Sbjct: 476 KQVHAYAFKAGLVDDRM-LSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYA 534

Query: 84  KLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDM-PRRNAIAWN 138
           + G+ +++L LF+ M     + N  ++  +++  ++ G +      ++ M P    +   
Sbjct: 535 QFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTR 594

Query: 139 SMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
               C V    R G   EA     ++        + D  +  T++ A      +E GK+ 
Sbjct: 595 EHCSCIVDLLARAGKLTEAANFIDQMP------FEPDIIMWKTLLAASKMHNDMEMGKRA 648

Query: 195 HSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMK 234
              I    L+ D    ++ V   N+Y   G++N   ++   M+
Sbjct: 649 AEGI----LNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMR 687


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 39/377 (10%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV-RLFKELNSDLVERLQC- 170
            + A   + AR LF+ +PR  A      + C   +G ++ ++ + F E+ S L  R    
Sbjct: 118 LSNASTYRAARHLFDVVPRPTA-----ALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAI 172

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
            +  +  V+ +CA  AA   G Q H H LV G+  D  + ++LV+ Y K GD +SA    
Sbjct: 173 PSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAF 232

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
             M   D   ++ LI+GY+  G + +ARR+FD     +S  WNSMI+ Y    E  EAL 
Sbjct: 233 KEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALT 292

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF +M R G   +A T+ +V S C+  G L+ G++      +   + +VIV +AL++ Y 
Sbjct: 293 LFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAW-IREEDLQNVIVHTALMEMYV 351

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K                               C  I++A+H F  MP + +++W++MI G
Sbjct: 352 K-------------------------------CRAIDEARHEFDRMPRRDVVAWSTMIAG 380

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            SQNG P E+L+LF  M   + + ++ +L  V+SACA + S ELGEQ+   +    L   
Sbjct: 381 YSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLT 440

Query: 471 QIISTSLVDFYCKCGFI 487
             + ++L+D Y KCG +
Sbjct: 441 SYLGSALIDMYTKCGHV 457



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 205/476 (43%), Gaps = 99/476 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC    +   G Q H H L +G+L                                 
Sbjct: 180 VLKSCAQSAASCQGSQTHCHALVRGMLG-------------------------------- 207

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F   A+++ + K G  + +L  F  MP K+    N LI+G++K+G+++ AR LF+ MP
Sbjct: 208 DVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMP 267

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           RR + +WNSMI CY   G  REA+ LF ++   L E    +A  + TV   CA    L+ 
Sbjct: 268 RRTSASWNSMIACYAHGGEFREALTLFDQM---LREGASPNAITITTVFSICAKTGDLDT 324

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++  + I    L  + ++ ++L+ +Y KC   + A    + M   D    S +I+GY+ 
Sbjct: 325 GRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQ 383

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+ +                               E+L LF +M+      +  TL  V
Sbjct: 384 NGRPH-------------------------------ESLELFERMKATNCKPNEVTLVGV 412

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSAC+ LG  E G+Q+  +     +     + SAL+D Y+K                   
Sbjct: 413 LSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTK------------------- 453

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +  A+ +F  M  K +++WNSMI GL+ NG   +A+ L+  M   
Sbjct: 454 ------------CGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGD 501

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG 485
            ++ ++ +  ++++AC +   ++ G   F  +      S Q+   + +VD  CK G
Sbjct: 502 GIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSG 557



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 6/248 (2%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           L AL+S   N      AR +FD     ++ +  + +SG    +   E + +   + R G 
Sbjct: 114 LHALLS---NASTYRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGG 170

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
              +  +  VL +C+       G Q H HA   G++ DV V +AL+D Y+K G    A  
Sbjct: 171 AIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALM 230

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
            F E+ V D I +N +IT YS  G +E+A+ +F +MP ++  SWNSMI   +  G   EA
Sbjct: 231 AFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREA 290

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLVD 479
           L LF  M +     +  ++ +V S CA    L+ G +  AR  I   D  + I+ T+L++
Sbjct: 291 LTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRR--ARAWIREEDLQNVIVHTALME 348

Query: 480 FYCKCGFI 487
            Y KC  I
Sbjct: 349 MYVKCRAI 356


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/491 (29%), Positives = 232/491 (47%), Gaps = 55/491 (11%)

Query: 3   TRIDYLA--RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           T  DY+    LL  CN H   +   Q+    +K G  +S L + N L+  Y +      A
Sbjct: 140 TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG-YDSRLIVGNTLVDSYCKSNRLDLA 198

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG-----FAK 115
             LF EMP  + F++ A++   + L       Q+ + + + N F WN+ +S      ++K
Sbjct: 199 CQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTN-FVWNVFVSNALLDFYSK 257

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
              +  AR LF++MP ++ +++N +I  Y  +G  + A  LF+EL     +R Q   F  
Sbjct: 258 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQ---FPF 314

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           AT++   ++    E G+QIH+  +V   D + ++G+SLV++Y K                
Sbjct: 315 ATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAK---------------- 358

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                          CGK  +A  +F   T  S+V W +MIS Y+      E L LF+KM
Sbjct: 359 ---------------CGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKM 403

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R+  V+ D +T AS+L A +S+  L  GKQ+H    K G + +V   SALLD Y+K G  
Sbjct: 404 RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSI 463

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGL 411
            DA + F E+   + +  N MI+ Y+  G  E     F+ M    L    +S+  ++   
Sbjct: 464 KDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSAC 523

Query: 412 SQNGSPIEALDLFCNMN---KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           S +G   E L  F +M    KLD R + +  ASV+            E++ A + I   D
Sbjct: 524 SHSGLVEEGLWHFNSMTQIYKLDPRREHY--ASVVDMLCRSGRFNEAEKLMAEMPI---D 578

Query: 469 SDQIISTSLVD 479
            D+I+ +S+++
Sbjct: 579 PDEIMWSSVLN 589



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 197/448 (43%), Gaps = 69/448 (15%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N  +  F+K G   ++ QLF  MP KN  S NM+ISG+ K+G L  AR LF+ M  R A+
Sbjct: 51  NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAV 110

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W  +I  Y +    +EA  LF ++     E    D     T++  C          Q+ 
Sbjct: 111 TWTILIGGYSQLNQFKEAFELFVQMQRCGTEP---DYVTFVTLLSGCNGHEMGNQITQVQ 167

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS------------- 242
           + I+  G D   ++G++LV+ Y K    + A Q+   M E D F  +             
Sbjct: 168 TQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIV 227

Query: 243 ----------------------ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                 AL+  Y+    + DAR++FD   +   V +N +ISGY 
Sbjct: 228 LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA 287

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            + +   A  LF +++           A++LS  S+    E G+Q+H          +++
Sbjct: 288 WDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEIL 347

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V ++L+D Y+K                               CG+ E+A+ IF  + ++S
Sbjct: 348 VGNSLVDMYAK-------------------------------CGKFEEAEMIFTNLTHRS 376

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            + W +MI    Q G   E L LF  M +  +  D+ + AS++ A A+I+SL LG+Q+ +
Sbjct: 377 AVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHS 436

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +   G  S+    ++L+D Y KCG IK
Sbjct: 437 FIIKSGFMSNVFSGSALLDVYAKCGSIK 464



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 35/327 (10%)

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           I + I+  G D D+   +  V  + K G+ + A Q+   M   +    + +ISGY   G 
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           + +AR++FD   + ++V W  +I GY   N+  EA  LF +M+R G   D  T  ++LS 
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK------- 366
           C+         QV     K+G    +IV + L+D+Y K      AC+LF E+        
Sbjct: 154 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTF 213

Query: 367 ----------------------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
                                       V++  + N ++  YS    + DA+ +F  MP 
Sbjct: 214 AAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPE 273

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           +  +S+N +I G + +G    A DLF  +        +F  A+++S  +N    E+G Q+
Sbjct: 274 QDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI 333

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCG 485
            A+  +   DS+ ++  SLVD Y KCG
Sbjct: 334 HAQTIVTTADSEILVGNSLVDMYAKCG 360



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 186/457 (40%), Gaps = 111/457 (24%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I +G+Q+H   +K   + +   ++N LL  Y +  +  DA  LFDEMP ++  S+N +I 
Sbjct: 226 IVLGQQIHSFVIKTNFVWNVF-VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS 284

Query: 81  GFMKLGHKEKSLQLFNVMP-----------------QKNDFSWNM--------------- 108
           G+   G  + +  LF  +                    N   W M               
Sbjct: 285 GYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADS 344

Query: 109 -------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                  L+  +AK G+ + A  +F ++  R+A+ W +MI  YV+ GF  E ++LF ++ 
Sbjct: 345 EILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR 404

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
              V     D    A+++ A A +A+L  GKQ+HS I+ +G          + N+     
Sbjct: 405 QASV---IADQATFASLLRASASIASLSLGKQLHSFIIKSGF---------MSNV----- 447

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                            F  SAL+  YA CG + DA + F    D + V WN+MIS Y  
Sbjct: 448 -----------------FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQ 490

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID---- 337
           N E    L  F +M  +G+  D+ +   VLSACS  G +E G        ++  +D    
Sbjct: 491 NGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRRE 550

Query: 338 ------DVIVASALLDTYSK--RGMPSD-----------ACK--------------LFSE 364
                 D++  S   +   K    MP D           AC+              LF+ 
Sbjct: 551 HYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNM 610

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            ++ D      M  +Y++ G+ E+   + + M ++ +
Sbjct: 611 EELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGV 647



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 20/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL++  +  S+ +GKQLH   +K G +++     + LL +Y +CG+  DA+  F EM
Sbjct: 415 FASLLRASASIASLSLGKQLHSFIIKSGFMSNVFS-GSALLDVYAKCGSIKDAVQTFQEM 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P RN  SWNAMI  + + G  E +L+ F  M     Q +  S+  ++S  + +G ++   
Sbjct: 474 PDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGL 533

Query: 124 TLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             FN M       PRR   A  S++    R+G   EA +L  E+  D       D  + +
Sbjct: 534 WHFNSMTQIYKLDPRREHYA--SVVDMLCRSGRFNEAEKLMAEMPID------PDEIMWS 585

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +V+ AC      E  ++    +       D+    ++ N+Y   G + + ++V   M++
Sbjct: 586 SVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRD 644



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 6/190 (3%)

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
           R   L++ ++L S+ S  S    L     +     K G   D   ++  +  + K G  S
Sbjct: 5   RPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELS 64

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
            A +LF ++   +T+  N MI+ Y   G + +A+ +F  M  ++ ++W  +I G SQ   
Sbjct: 65  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 124

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE---QVFARVTIIGLDSDQII 473
             EA +LF  M +     D  +  +++S C   +  E+G    QV  ++  +G DS  I+
Sbjct: 125 FKEAFELFVQMQRCGTEPDYVTFVTLLSGC---NGHEMGNQITQVQTQIIKLGYDSRLIV 181

Query: 474 STSLVDFYCK 483
             +LVD YCK
Sbjct: 182 GNTLVDSYCK 191


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 192/395 (48%), Gaps = 69/395 (17%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           LF V  +++    + LI  +AK G++  AR LF+++  R+ ++WNSMI  Y   G+A++A
Sbjct: 158 LFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDA 217

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + LF+++     E  + D   L +++GAC+ L  L  G+ +    +   +   + LGS L
Sbjct: 218 MDLFRKMEE---EGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKL 274

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           +++YGK                               CG ++ ARRVF++      V W 
Sbjct: 275 ISMYGK-------------------------------CGDLDSARRVFNQMIKKDRVAWT 303

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MI+ Y  N + +EA  LF +M + GV  DA TL++VLSAC S+G LE GKQ+  HA ++
Sbjct: 304 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASEL 363

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            +  ++ VA+ L+D Y K                               CGR+E+A  +F
Sbjct: 364 SLQHNIYVATGLVDMYGK-------------------------------CGRVEEALRVF 392

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP K+  +WN+MI   +  G   EAL LF   +++ +     +   V+SAC +   + 
Sbjct: 393 EAMPVKNEATWNAMITAYAHQGHAKEALLLF---DRMSVPPSDITFIGVLSACVHAGLVH 449

Query: 454 LGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
            G + F  + ++ GL       T+++D   + G +
Sbjct: 450 QGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGML 484



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 171/385 (44%), Gaps = 70/385 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA-VRLFKELNSDLV 165
           N LI    + G+   +  LF+     N  ++N MI          EA + L++ +     
Sbjct: 69  NFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMK---F 125

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L+ D F    V  ACA L  +  G+ +HS +   GL+ D  +  SL+ +Y K      
Sbjct: 126 SGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAK------ 179

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG++  AR++FD  T+  +V WNSMISGY      
Sbjct: 180 -------------------------CGQVGYARKLFDEITERDTVSWNSMISGYSEAGYA 214

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC--KVGVIDDVIVAS 343
            +A+ LF KM   G   D  TL S+L ACS LG L  G+ +   A   K+G+        
Sbjct: 215 KDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGL-------- 266

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
                                     T L + +I++Y  CG ++ A+ +F  M  K  ++
Sbjct: 267 -------------------------STFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA 301

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W +MI   SQNG   EA  LF  M K  +  D  +L++V+SAC ++ +LELG+Q+    +
Sbjct: 302 WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHAS 361

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            + L  +  ++T LVD Y KCG ++
Sbjct: 362 ELSLQHNIYVATGLVDMYGKCGRVE 386



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 57/293 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    +  G+ L    + K I  ST  + ++L+ MY +CG+   A  +F++M
Sbjct: 236 LVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF-LGSKLISMYGKCGDLDSARRVFNQM 294

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMP---------------------- 99
            +++  +W AMI  + + G   ++ +LF       V P                      
Sbjct: 295 IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGK 354

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      Q N +    L+  + K G ++ A  +F  MP +N   WN+MI  Y   G
Sbjct: 355 QIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQG 414

Query: 149 FAREAVRLFKELN---SDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLD 204
            A+EA+ LF  ++   SD+        FI   V+ AC     +  G +  H    + GL 
Sbjct: 415 HAKEALLLFDRMSVPPSDIT-------FI--GVLSACVHAGLVHQGCRYFHEMSSMFGLV 465

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMND 256
                 +++++L  + G  + A + +     +PD+  L+A++     C K  D
Sbjct: 466 PKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGA---CHKRKD 515


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 192/395 (48%), Gaps = 69/395 (17%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           LF V  +++    + LI  +AK G++  AR LF+++  R+ ++WNSMI  Y   G+A++A
Sbjct: 154 LFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDA 213

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + LF+++     E  + D   L +++GAC+ L  L  G+ +    +   +   + LGS L
Sbjct: 214 MDLFRKMEE---EGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKL 270

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           +++YGK                               CG ++ ARRVF++      V W 
Sbjct: 271 ISMYGK-------------------------------CGDLDSARRVFNQMIKKDRVAWT 299

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MI+ Y  N + +EA  LF +M + GV  DA TL++VLSAC S+G LE GKQ+  HA ++
Sbjct: 300 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASEL 359

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            +  ++ VA+ L+D Y K                               CGR+E+A  +F
Sbjct: 360 SLQHNIYVATGLVDMYGK-------------------------------CGRVEEALRVF 388

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP K+  +WN+MI   +  G   EAL LF   +++ +     +   V+SAC +   + 
Sbjct: 389 EAMPVKNEATWNAMITAYAHQGHAKEALLLF---DRMSVPPSDITFIGVLSACVHAGLVH 445

Query: 454 LGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
            G + F  + ++ GL       T+++D   + G +
Sbjct: 446 QGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGML 480



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 171/385 (44%), Gaps = 70/385 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA-VRLFKELNSDLV 165
           N LI    + G+   +  LF+     N  ++N MI          EA + L++ +     
Sbjct: 65  NFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMK---F 121

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L+ D F    V  ACA L  +  G+ +HS +   GL+ D  +  SL+ +Y K      
Sbjct: 122 SGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAK------ 175

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG++  AR++FD  T+  +V WNSMISGY      
Sbjct: 176 -------------------------CGQVGYARKLFDEITERDTVSWNSMISGYSEAGYA 210

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC--KVGVIDDVIVAS 343
            +A+ LF KM   G   D  TL S+L ACS LG L  G+ +   A   K+G+        
Sbjct: 211 KDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGL-------- 262

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
                                     T L + +I++Y  CG ++ A+ +F  M  K  ++
Sbjct: 263 -------------------------STFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA 297

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W +MI   SQNG   EA  LF  M K  +  D  +L++V+SAC ++ +LELG+Q+    +
Sbjct: 298 WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHAS 357

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            + L  +  ++T LVD Y KCG ++
Sbjct: 358 ELSLQHNIYVATGLVDMYGKCGRVE 382



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 57/293 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    +  G+ L    + K I  ST  + ++L+ MY +CG+   A  +F++M
Sbjct: 232 LVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF-LGSKLISMYGKCGDLDSARRVFNQM 290

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMP---------------------- 99
            +++  +W AMI  + + G   ++ +LF       V P                      
Sbjct: 291 IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGK 350

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      Q N +    L+  + K G ++ A  +F  MP +N   WN+MI  Y   G
Sbjct: 351 QIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQG 410

Query: 149 FAREAVRLFKELN---SDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLD 204
            A+EA+ LF  ++   SD+        FI   V+ AC     +  G +  H    + GL 
Sbjct: 411 HAKEALLLFDRMSVPPSDIT-------FI--GVLSACVHAGLVHQGCRYFHEMSSMFGLV 461

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMND 256
                 +++++L  + G  + A + +     +PD+  L+A++     C K  D
Sbjct: 462 PKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGA---CHKRKD 511


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 151/584 (25%), Positives = 254/584 (43%), Gaps = 142/584 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    S   G+ ++   LK G  ++    A  ++ ++ +  +  DAL +F ++   
Sbjct: 153 VLSACTALGSPLYGELVYSLALKNGFFSNGYVRAG-MIDLFAKLCSFEDALRVFQDVLCE 211

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFS------------------- 105
           N   WNA+I G +K      +L LF        MP    FS                   
Sbjct: 212 NVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQ 271

Query: 106 -W-------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            W               +I  +AK  ++  A   F  MP RN ++W ++I  +V+   + 
Sbjct: 272 GWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSI 331

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A   FKE+   + E++  + + + +V+ AC +   ++   Q+HS I   G   DS + S
Sbjct: 332 SAFHFFKEMR-KVGEKI--NNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSS 388

Query: 212 SLVNLYGKCGDFNSANQVLNMMK------------------------------------E 235
           +L+N+Y K G  + + +V   M+                                     
Sbjct: 389 ALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLR 448

Query: 236 PDDFCLSALIS--------------------------------GYANCGKMNDARRVFDR 263
           PD FC S+++S                                 Y+ CG + ++  VF++
Sbjct: 449 PDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQ 508

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             D  +V W SMI+G+  ++   +A+ LF +M    +  D  TL + L+ACS+L  LE G
Sbjct: 509 MPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKG 568

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K+VHG+A +  V  +V+V  AL++ YSK                               C
Sbjct: 569 KEVHGYALRARVGKEVLVGGALVNMYSK-------------------------------C 597

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G I  A+ +F  +P K   S +S++ G +QNG   +AL LF  +   DL +D F+++SVI
Sbjct: 598 GAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVI 657

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            A A ++SL++G Q+ A VT +GL+++  + +SLV  Y KCG I
Sbjct: 658 GAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSI 701



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 220/509 (43%), Gaps = 110/509 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K LH HFLK  IL S   + N L+  Y +  +   AL LFD+ P  N  SWN +I G  +
Sbjct: 65  KILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQ 124

Query: 85  LGHKEKSLQLFNVMP----QKNDFSWNMLIS--------------------------GFA 114
               E S + F  M       N F++  ++S                          G+ 
Sbjct: 125 NFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYV 184

Query: 115 KAG---------ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
           +AG           + A  +F D+   N + WN++I   V+N     A+ LF ++     
Sbjct: 185 RAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRF- 243

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
                ++F  ++++ ACA L  LE+G+ +   ++  G   D  +G+++++LY KC D   
Sbjct: 244 --FMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRD--- 298

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                       M+ A + F R    + V W ++ISG++  ++ 
Sbjct: 299 ----------------------------MDQAVKEFLRMPIRNVVSWTTIISGFVQKDDS 330

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
             A   F +MR+ G   +  T+ SVL+AC+    ++   Q+H    K G   D  V+SAL
Sbjct: 331 ISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSAL 390

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISW 404
           ++ YSK G+                               ++ ++ +FR M + K+L  W
Sbjct: 391 INMYSKIGV-------------------------------VDLSERVFREMESTKNLAMW 419

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
             MI   +Q+GS   A++LF  M +  LR DKF  +SV+S    I SL LG  +   +  
Sbjct: 420 AVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSI---IDSLSLGRLIHCYILK 476

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           IGL +D  + +SL   Y KCG   ++E Y
Sbjct: 477 IGLFTDISVGSSLFTMYSKCG--SLEESY 503



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 195/423 (46%), Gaps = 80/423 (18%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+ +G+ +H + LK G+  + + + + L  MY +CG+  ++  +F++MP ++  SW +MI
Sbjct: 463 SLSLGRLIHCYILKIGLF-TDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMI 521

Query: 80  EGFMKLGHKEKSLQLFNVM------PQKNDFSWNM------------------------- 108
            GF +  H E+++QLF  M      P +   +  +                         
Sbjct: 522 TGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVG 581

Query: 109 --------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                   L++ ++K G +  AR +F+ +P+++  + +S++  Y +NG+  +A+ LF E+
Sbjct: 582 KEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEI 641

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
               +  L  D+F +++VIGA A L +L+ G Q+H+ +   GL+ +  +GSSLV +    
Sbjct: 642 R---MADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTM---- 694

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                      Y+ CG +++  +VF++      + W +MI  Y 
Sbjct: 695 ---------------------------YSKCGSIDECHKVFEQIEKPDLISWTAMIVSYA 727

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDV 339
            + +  EAL ++  MR+ G   D+ T   VLSACS  G +E G   ++  A + G+    
Sbjct: 728 QHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGY 787

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIE----DAKHIFR 394
              + ++D   + G   +A +  + + +  D +L   ++      G IE     AK +  
Sbjct: 788 YHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIE 847

Query: 395 TMP 397
             P
Sbjct: 848 LEP 850



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 128/300 (42%), Gaps = 45/300 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L +C+  HS+  GK++H + L+  +    L +   L+ MY +CG    A  +FD +
Sbjct: 552 LTAALTACSALHSLEKGKEVHGYALRARVGKEVL-VGGALVNMYSKCGAIVLARRVFDML 610

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------DFSW 106
           P+++ FS ++++ G+ + G+ E +L LF+ +   +                     D   
Sbjct: 611 PQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGT 670

Query: 107 NM------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
            +                  L++ ++K G +     +F  + + + I+W +MI  Y ++G
Sbjct: 671 QLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHG 730

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLDFDS 207
              EA++++  +     E  + D+     V+ AC+    +E G   ++S     G++   
Sbjct: 731 KGAEALKVYDLMRK---EGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGY 787

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
              + +V+L G+ G    A + +N M  EPD      L++     G +   R    R  +
Sbjct: 788 YHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIE 847


>gi|218200986|gb|EEC83413.1| hypothetical protein OsI_28873 [Oryza sativa Indica Group]
          Length = 481

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 186/384 (48%), Gaps = 70/384 (18%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N+L+ G++  G L+ AR LF+ MP RN ++W S+I  Y ++G    A+ LF      
Sbjct: 70  FLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFAAF--- 126

Query: 164 LVERLQCDA---FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
             ++  C+    F+LA+V+ AC    A+  G+Q+H   +   LD +  +G++L+NLY K 
Sbjct: 127 --QKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKL 184

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                          G M++A  VF      + V WN++I+ Y 
Sbjct: 185 -------------------------------GCMDEAMLVFHALPVRTPVTWNTVITEYA 213

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
                  AL LF +M   GV  D   LAS +SACS+LGFLE G+Q+HG+A          
Sbjct: 214 QIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYA---------- 263

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
                                +      DT ++N +I +Y  C R+  A+ +F  M  ++
Sbjct: 264 ---------------------YRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRN 302

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           L+SW +MI G  QN    EA+ +F NM +   + D F+  S++++C +++++  G Q+ A
Sbjct: 303 LVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHA 362

Query: 461 RVTIIGLDSDQIISTSLVDFYCKC 484
            V    L++D+ +  +L+D Y KC
Sbjct: 363 HVIKADLEADEYVKNALIDMYAKC 386



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 209/494 (42%), Gaps = 109/494 (22%)

Query: 8   LARLLQSC---NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           LAR+L SC          +   +H      G L+    + N LL+ Y   G   DA  LF
Sbjct: 34  LARVLLSCLPTGGDRLRRLNPAIHARATVAGGLDDVF-LTNLLLRGYSNLGRLRDARHLF 92

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------- 101
           D MP RN  SW ++I  + + G  + ++ LF    +                        
Sbjct: 93  DRMPHRNLVSWGSVISMYTQHGRDDCAISLFAAFQKASCEVPNEFLLASVLRACTQSKAV 152

Query: 102 -----------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                            N +    LI+ +AK G +  A  +F+ +P R  + WN++I  Y
Sbjct: 153 SLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITEY 212

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            + G    A+ LF  +    +E ++ D F+LA+ + AC+ L  LE G+QIH +   +  +
Sbjct: 213 AQIGCGGVALELFDRMG---IEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATE 269

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+ + + L++LY K                               C +++ AR++FD  
Sbjct: 270 TDTSVINVLIDLYCK-------------------------------CSRLSAARKLFDCM 298

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
              + V W +MISGY+ N+ + EA+ +F  M + G   D     S+L++C SL  +  G+
Sbjct: 299 EYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGR 358

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+H H  K  +  D  V +AL+D Y+K                               C 
Sbjct: 359 QIHAHVIKADLEADEYVKNALIDMYAK-------------------------------CE 387

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            + +A+ +F  +     IS+N+MI G S+N    EA+++F  M    LR    +  S++ 
Sbjct: 388 HLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFHRMRFFSLRPSLLTFVSLLG 447

Query: 445 ACANISSLELGEQV 458
             ++  ++EL +Q+
Sbjct: 448 VSSSQLAIELSKQI 461



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 165/360 (45%), Gaps = 74/360 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C    ++ +G+Q+H   +K   L++ + +   L+ +Y + G   +A+L+F  +
Sbjct: 139 LASVLRACTQSKAVSLGEQVHGIAVKLD-LDANVYVGTALINLYAKLGCMDEAMLVFHAL 197

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
           P R   +WN +I  + ++G    +L+LF+ M                             
Sbjct: 198 PVRTPVTWNTVITEYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGR 257

Query: 100 QKNDFSW-----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           Q + +++           N+LI  + K   L  AR LF+ M  RN ++W +MI  Y++N 
Sbjct: 258 QIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNS 317

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+ +F  +        Q D F   +++ +C  LAA+  G+QIH+H++   L     
Sbjct: 318 FNAEAITMFWNMTQ---AGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADL----- 369

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                     E D++  +ALI  YA C  + +AR VFD   +  
Sbjct: 370 --------------------------EADEYVKNALIDMYAKCEHLTEARAVFDALAEDD 403

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ +N+MI GY  N +  EA+ +FH+MR   +     T  S+L   SS   +E  KQ+HG
Sbjct: 404 AISYNAMIEGYSKNRDLAEAVNIFHRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHG 463



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D  L N ++  YS+ GR+ DA+H+F  MP+++L+SW S+I   +Q+G    A+ LF    
Sbjct: 68  DVFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFAAFQ 127

Query: 429 KLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           K    + ++F LASV+ AC    ++ LGEQV      + LD++  + T+L++ Y K G  
Sbjct: 128 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGC- 186

Query: 488 KMDEYYLM 495
            MDE  L+
Sbjct: 187 -MDEAMLV 193



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 43/231 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  + +C+    +  G+Q+H +  +      T  + N L+ +Y +C   + A  LFD M
Sbjct: 240 LASAVSACSALGFLEGGRQIHGYAYRSATETDT-SVINVLIDLYCKCSRLSAARKLFDCM 298

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
             RN  SW  MI G+M+     +++ +F  M Q                           
Sbjct: 299 EYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGR 358

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        +++  N LI  +AK   L  AR +F+ +   +AI++N+MI  Y +N 
Sbjct: 359 QIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNR 418

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
              EAV +F  +       L+       +++G  +   A+E  KQIH  I+
Sbjct: 419 DLAEAVNIFHRMR---FFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLII 466


>gi|358346115|ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503052|gb|AES84255.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 592

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 234/493 (47%), Gaps = 84/493 (17%)

Query: 26  QLHLH---FLKKGILNSTLPIA----NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
           QL  H   F  +   N T+P +    N+ +   +R G  T A  LFD    RN  +WN+M
Sbjct: 16  QLAPHIRSFTSQTKTNDTIPQSLYQLNKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSM 75

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG-FAKAGE--LKTARTLFNDMPRRNAI 135
           I G+++     K+ QLF+ MP ++  SWN++ISG F+  G   ++  R LF+ MP+R+ +
Sbjct: 76  ITGYVQRREIAKARQLFDEMPLRDIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQRDCV 135

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN++I  Y +NG   +A+ +F+ +    V  + C+A +   ++    D +A+ + +++ 
Sbjct: 136 SWNTVISGYAKNGRMDQAIEIFESMPERNV--VSCNAVVNGFLLNGDVD-SAVGFFRKMG 192

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL----NMMKEPDD--FCLSALISGYA 249
                     DS   S LV+   + G  + A ++L    N   E DD  +  + LI+GY 
Sbjct: 193 ER--------DSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGYG 244

Query: 250 NCGKMNDARRVFD-------------RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
             G + +AR VFD             R    + V WNSM+  Y+   +   A  LF +M 
Sbjct: 245 QRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYVKAGDVVSARELFDRM- 303

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
              V  DA +  +V+     +G +E                                   
Sbjct: 304 ---VERDACSWNTVIGGYVQIGDME----------------------------------- 325

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
           +A KLF E+ + D +  N++I+ +S  G ++  K  F  MP+K+LISWNS+I G  +N  
Sbjct: 326 EASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNED 385

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV--FARVTIIGLDSDQIIS 474
              A++LF  M     R D+ +L+S++S    +  L LG+Q+  F   T++    D  I+
Sbjct: 386 YKGAIELFSQMQLKGERPDRHTLSSILSVSTGLVDLYLGKQIHQFVTKTVV---PDLPIN 442

Query: 475 TSLVDFYCKCGFI 487
            SL+  Y +CG I
Sbjct: 443 NSLITMYSRCGEI 455



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 217/467 (46%), Gaps = 79/467 (16%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
           LFD MP+R+C SWN +I G+ K G  ++++++F  MP++N  S N +++GF   G++ +A
Sbjct: 125 LFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSCNAVVNGFLLNGDVDSA 184

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA--TVIG 180
              F  M  R++ + + ++   VRNG    A  +  E  ++  E+   D  + A  T+I 
Sbjct: 185 VGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEK---DDLVYAYNTLIA 241

Query: 181 ACADLAALEYGKQIHSHILVNG---------LDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
                  +E  + +   ++ +          L  + V  +S++  Y K GD  SA ++ +
Sbjct: 242 GYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYVKAGDVVSARELFD 301

Query: 232 MMKE-------------------------------PDDFCLSALISGYANCGKMNDARRV 260
            M E                               PD    +++ISG++  G +   +  
Sbjct: 302 RMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEF 361

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           F+     + + WNS+I+GY  N +   A+ LF +M+  G   D  TL+S+LS  + L  L
Sbjct: 362 FENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTLSSILSVSTGLVDL 421

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             GKQ+H    K  V D                +P +                N++IT+Y
Sbjct: 422 YLGKQIHQFVTKTVVPD----------------LPIN----------------NSLITMY 449

Query: 381 SSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           S CG I DA+H+F  M   K +I+WN+MI G + +G   +AL+LF  M  L ++    + 
Sbjct: 450 SRCGEIGDARHVFNEMKLYKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITF 509

Query: 440 ASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCG 485
            SV++ACA+   +E G++ F + +   G++       SLVD   + G
Sbjct: 510 ISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVEHFASLVDILGRQG 556



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 37/325 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y++ G+   A  LFD M  R+  SWN +I G++++G  E++ +LF  MP  +  
Sbjct: 281 NSMMMCYVKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVL 340

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN +ISGF++ G+LK  +  F +MP +N I+WNS+I  Y +N   + A+ LF ++    
Sbjct: 341 SWNSIISGFSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQ--- 397

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           ++  + D   L++++     L  L  GKQIH  +    +  D  + +SL+ +Y +CG+  
Sbjct: 398 LKGERPDRHTLSSILSVSTGLVDLYLGKQIHQFVTKTVVP-DLPINNSLITMYSRCGEIG 456

Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            A  V N MK   D    +A+I GYA                            G+ +  
Sbjct: 457 DARHVFNEMKLYKDVITWNAMIGGYA--------------------------FHGFAA-- 488

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK-QVHGHACKVGVIDDVIVA 342
              +AL LF +M+   +     T  SVL+AC+  G +E GK Q +      G+   V   
Sbjct: 489 ---QALELFERMKGLKIQPTYITFISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVEHF 545

Query: 343 SALLDTYSKRGMPSDACKLFSELKV 367
           ++L+D   ++G   +A  L   + V
Sbjct: 546 ASLVDILGRQGQLQEAMDLIVNMPV 570



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 22/174 (12%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMI 79
           +++GKQ+H  F+ K ++   LPI N L+ MY RCG   DA  +F+EM   ++  +WNAMI
Sbjct: 421 LYLGKQIH-QFVTKTVV-PDLPINNSLITMYSRCGEIGDARHVFNEMKLYKDVITWNAMI 478

Query: 80  EGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDM------ 129
            G+   G   ++L+LF  M     Q    ++  +++  A AG ++  +  FN M      
Sbjct: 479 GGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLVEEGKRQFNSMINDYGI 538

Query: 130 -PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            PR    A  S++    R G  +EA+ L   +       ++ D  +   ++GAC
Sbjct: 539 EPRVEHFA--SLVDILGRQGQLQEAMDLIVNMP------VKPDKAVWGALLGAC 584


>gi|225460139|ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Vitis vinifera]
          Length = 725

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/521 (24%), Positives = 240/521 (46%), Gaps = 106/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LL++C    S+  GKQ+H+H    G+ N+   +  +L+ MY  CG+  DA  +FD +
Sbjct: 154 FSSLLRACVESKSLTHGKQIHVHIRINGLENNEF-LRTKLVHMYTSCGSLEDARGVFDGV 212

Query: 68  PRRNCFSWNAMIEGFMKLG--HKEKSLQLFNVMPQK----NDFSWNMLISGFA------- 114
             ++ ++WNA++ G +  G  H  ++L  ++ M +     N +S++ +I  FA       
Sbjct: 213 SSKSVYTWNALLRGNVISGRRHYREALSTYSEMRELGVELNVYSFSCMIKSFAGATAFRQ 272

Query: 115 ----------------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                                       K G++K AR +F ++  R+ + W +MI  +  
Sbjct: 273 GLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFGH 332

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           N   REA+   + +     E +  ++ I+ T++    ++ A + G+++H++++       
Sbjct: 333 NRLQREALEYLRWMRR---EGICPNSVIMTTILPVIGEVGAWKLGREVHAYVV------- 382

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                       K   +  + QV         F  SALI  Y  CG M   R+VF  +T+
Sbjct: 383 ------------KTKSY--SKQV---------FIQSALIDMYCKCGDMASGRQVFYASTE 419

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            ++V W +++SGY+SN    +AL     M++ G   D  T+A+VL  C+ L  L  GK++
Sbjct: 420 RNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEI 479

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H +A K G + +V +A++L+  YSK                               CG +
Sbjct: 480 HSYAVKNGFLPNVSIATSLMVMYSK-------------------------------CGNL 508

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + +  +F  M  +++ISW +MI    +NG   EA+ +F +M     R D  ++A ++S C
Sbjct: 509 DYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGVFRSMQLSKHRPDSVAMARILSIC 568

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +  L+LG+++  ++     +S   +S  ++  Y K G I
Sbjct: 569 GELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGAI 609



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 193/466 (41%), Gaps = 112/466 (24%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G + H   +K G+++S++ +   L+ MY +CG    A L+F+E+  R+   W AMI GF 
Sbjct: 273 GLKAHALLIKNGLVDSSI-LRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGF- 330

Query: 84  KLGHKE-------------------KSLQLFNVMP------------------------Q 100
             GH                      S+ +  ++P                         
Sbjct: 331 --GHNRLQREALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYS 388

Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
           K  F  + LI  + K G++ + R +F     RNA++W +++  YV NG   +A+R    +
Sbjct: 389 KQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLDQALRSIAWM 448

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
                E  + D   +ATV+  CA+L AL  GK+IHS+ + NG   +  + +SL+ +Y KC
Sbjct: 449 QQ---EGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKC 505

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G+ + + ++ + M                      DAR V         + W +MI  Y+
Sbjct: 506 GNLDYSFKLFDGM----------------------DARNV---------ISWTAMIDSYV 534

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            N    EA+ +F  M+ +    D+  +A +LS C  L  L+ GK++HG   K        
Sbjct: 535 ENGCLHEAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPF 594

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V++ ++  Y K                                G I  AK  F+ +P K 
Sbjct: 595 VSAEIIKMYGK-------------------------------FGAISKAKLAFKAIPAKG 623

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            ++W ++I     N    +A++LF  M       + ++  +V+S C
Sbjct: 624 SMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLSIC 669



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 68/357 (19%)

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +N  A  S I  + R G  +EA+ +    +    + +  +    ++++ AC +  +L +G
Sbjct: 114 KNPHAIFSDIQRFARQGKLKEALTILDYCDQ---QGIPVNPTTFSSLLRACVESKSLTHG 170

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           KQIH HI +NGL+ +  L + LV++Y  CG                              
Sbjct: 171 KQIHVHIRINGLENNEFLRTKLVHMYTSCGS----------------------------- 201

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNED--TEALLLFHKMRRNGVLEDASTLAS 309
             + DAR VFD  +  S   WN+++ G + +      EAL  + +MR  GV  +  + + 
Sbjct: 202 --LEDARGVFDGVSSKSVYTWNALLRGNVISGRRHYREALSTYSEMRELGVELNVYSFSC 259

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           ++ + +       G + H    K G++D  I+ ++L+D Y K                  
Sbjct: 260 MIKSFAGATAFRQGLKAHALLIKNGLVDSSILRTSLIDMYFK------------------ 301

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        CG+I+ A+ +F  +  + ++ W +MI G   N    EAL+    M +
Sbjct: 302 -------------CGKIKLARLMFEEIVERDVVVWGAMIAGFGHNRLQREALEYLRWMRR 348

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
             +  +   + +++     + + +LG +V A V      S Q+ I ++L+D YCKCG
Sbjct: 349 EGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQSALIDMYCKCG 405



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 142/331 (42%), Gaps = 73/331 (22%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G+++H + +K    +  + I + L+ MY +CG+      +F     RN  SW A++ G+
Sbjct: 373 LGREVHAYVVKTKSYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGY 432

Query: 83  MKLGHKEKSLQLFNVMPQ----------------------------------KNDFSWNM 108
           +  G  +++L+    M Q                                  KN F  N+
Sbjct: 433 VSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPNV 492

Query: 109 LISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            I+      ++K G L  +  LF+ M  RN I+W +MI  YV NG   EAV +F+ +   
Sbjct: 493 SIATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGVFRSMQ-- 550

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            + + + D+  +A ++  C +L  L+ GK+IH  IL    DF+S+               
Sbjct: 551 -LSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKK--DFESI--------------- 592

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                          F  + +I  Y   G ++ A+  F       S+ W ++I  Y  N+
Sbjct: 593 --------------PFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYND 638

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
              +A+ LFH+M+ +G + +  T  +VLS C
Sbjct: 639 LYQDAINLFHQMQSDGFIPNHYTFKAVLSIC 669



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 33/205 (16%)

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL +     + G+  + +T +S+L AC     L HGKQ+H H  ++  +++        
Sbjct: 134 EALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGKQIHVH-IRINGLEN-------- 184

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                 +  L   ++ +Y+SCG +EDA+ +F  + +KS+ +WN+
Sbjct: 185 ----------------------NEFLRTKLVHMYTSCGSLEDARGVFDGVSSKSVYTWNA 222

Query: 407 MIVG--LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           ++ G  +S      EAL  +  M +L + ++ +S + +I + A  ++   G +  A +  
Sbjct: 223 LLRGNVISGRRHYREALSTYSEMRELGVELNVYSFSCMIKSFAGATAFRQGLKAHALLIK 282

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKM 489
            GL    I+ TSL+D Y KCG IK+
Sbjct: 283 NGLVDSSILRTSLIDMYFKCGKIKL 307



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDE 66
           +AR+L  C     + +GK++H   LKK     ++P ++  +++MY + G  + A L F  
Sbjct: 561 MARILSICGELRVLKLGKEIHGQILKKDF--ESIPFVSAEIIKMYGKFGAISKAKLAFKA 618

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTA 122
           +P +   +W A+IE +      + ++ LF+ M       N +++  ++S   +A     A
Sbjct: 619 IPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLSICERAELADDA 678

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFK 158
             +FN M RR  I      ++S+I    R G   +A R  +
Sbjct: 679 CLIFNLMSRRYRIKASNEHYSSIIELLNRVGRTEDAQRFIQ 719


>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
            [Cucumis sativus]
          Length = 1830

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 188/423 (44%), Gaps = 81/423 (19%)

Query: 109  LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
            L+  +   G++++AR +F+ MP  +  AW  MI  Y  N    + +  +  +     E  
Sbjct: 1158 LVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMSFRE-- 1215

Query: 169  QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             CD  I + ++ AC++L  +  G+++H  I+  G                          
Sbjct: 1216 -CDNIIFSIILKACSELREIVEGRKVHCQIVKVG-------------------------- 1248

Query: 229  VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                   PD F ++ LI  Y  CG++  +  VF+   D + V W SMI+GY+ NN   E 
Sbjct: 1249 ------GPDSFVMTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEG 1302

Query: 289  LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
            L+LF++MR   V  +  TL S+++A + L  L  GK VHG+A K        +A+  LD 
Sbjct: 1303 LVLFNRMRDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDM 1362

Query: 349  YSKRGMPSDACKLFSELKVYDTI------------------------------------- 371
            Y K G   DA  ++ EL   D +                                     
Sbjct: 1363 YVKCGQTRDARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPNSALL 1422

Query: 372  --------LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                     LN +I +Y+ C  I DA  IF  +  K +I+WNSMI G +QNGS  +AL L
Sbjct: 1423 QVFFQRVRFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRL 1482

Query: 424  FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL-DSDQIISTSLVDFYC 482
            F  M    L  D  +L S +SA A + ++++G  + A     GL  S+  I T+L++FY 
Sbjct: 1483 FNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYA 1542

Query: 483  KCG 485
            KCG
Sbjct: 1543 KCG 1545



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 219/498 (43%), Gaps = 118/498 (23%)

Query: 46   RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF---------------MKLGHKEK 90
            +L+ +Y   G+   A ++FD+MP  + ++W  MI  +               M++  +E 
Sbjct: 1157 KLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMSFREC 1216

Query: 91   SLQLFNVMPQ-----------------------KNDFSWNMLISGFAKAGELKTARTLFN 127
               +F+++ +                        + F    LI  + K G+++ +  +F 
Sbjct: 1217 DNIIFSIILKACSELREIVEGRKVHCQIVKVGGPDSFVMTGLIDMYGKCGQVECSSAVFE 1276

Query: 128  DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            ++  +N ++W SMI  YV+N  A E + LF  +   LVE    + F L ++I A   L A
Sbjct: 1277 EIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVE---SNPFTLGSIINAFTKLRA 1333

Query: 188  LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM-------------- 233
            L  GK +H + + N  +  S L ++ +++Y KCG    A  + + +              
Sbjct: 1334 LHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDARMIYDELPTIDLVSWTVMIVG 1393

Query: 234  ----KEPDDFC---------------------------LSALISGYANCGKMNDARRVFD 262
                ++P+D                             L+ALI  YA C  ++DA  +F 
Sbjct: 1394 YTQARQPNDGLRLFADEIRSDLLPNSALLQVFFQRVRFLNALIDMYAKCHTISDAYAIFH 1453

Query: 263  RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
               +   + WNSMISGY  N    +AL LF++MR   +  DA TL S LSA ++LG ++ 
Sbjct: 1454 GVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQV 1513

Query: 323  GKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G  +H ++ K G+   ++ + +ALL+ Y+K                              
Sbjct: 1514 GSSLHAYSVKGGLFSSNLYIGTALLNFYAK------------------------------ 1543

Query: 382  SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             CG    A+ +F +M  K++I+W++MI G    G    +L +F NM K DL+ ++    +
Sbjct: 1544 -CGDARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTT 1602

Query: 442  VISACANISSLELGEQVF 459
            V+SAC+    +E G + F
Sbjct: 1603 VLSACSYSGMVEEGGRYF 1620



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 157/333 (47%), Gaps = 54/333 (16%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L  ++ +     ++H GK +H + +K  I   +  +A   L MY++CG   DA +++DE+
Sbjct: 1321 LGSIINAFTKLRALHQGKWVHGYAIK-NIAELSSFLATTFLDMYVKCGQTRDARMIYDEL 1379

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMP---------QKNDFSWNMLISG 112
            P  +  SW  MI G+ +       L+LF      +++P         Q+  F  N LI  
Sbjct: 1380 PTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPNSALLQVFFQRVRF-LNALIDM 1438

Query: 113  FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            +AK   +  A  +F+ +  ++ I WNSMI  Y +NG A +A+RLF ++ S     L  DA
Sbjct: 1439 YAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRS---YSLAPDA 1495

Query: 173  FILATVIGACADLAALEYGKQIHSHILVNGLDFDS--VLGSSLVNLYGKCGDFNSANQVL 230
              L + + A A L A++ G  +H++ +  GL F S   +G++L+N Y KCGD  SA  V 
Sbjct: 1496 ITLVSTLSASATLGAIQVGSSLHAYSVKGGL-FSSNLYIGTALLNFYAKCGDARSARMVF 1554

Query: 231  NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
            + M             G  N                   + W++MI GY    + + +L 
Sbjct: 1555 DSM-------------GVKNI------------------ITWSAMIGGYGVQGDGSGSLS 1583

Query: 291  LFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            +F  M +  +  +     +VLSACS  G +E G
Sbjct: 1584 IFSNMLKEDLKPNEVIFTTVLSACSYSGMVEEG 1616



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 36/249 (14%)

Query: 239  FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
             C + L+  Y   G +  AR VFD+  +     W  MI  Y  N+   + +  +++MR +
Sbjct: 1153 LCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMS 1212

Query: 299  GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
                D    + +L ACS L  +  G++VH    KVG  D   V + L+D Y K       
Sbjct: 1213 FRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGGPDS-FVMTGLIDMYGK------- 1264

Query: 359  CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                    CG++E +  +F  + +K+++SW SMI G  QN    
Sbjct: 1265 ------------------------CGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAE 1300

Query: 419  EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV--FARVTIIGLDSDQIISTS 476
            E L LF  M    +  + F+L S+I+A   + +L  G+ V  +A   I  L S   ++T+
Sbjct: 1301 EGLVLFNRMRDALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSS--FLATT 1358

Query: 477  LVDFYCKCG 485
             +D Y KCG
Sbjct: 1359 FLDMYVKCG 1367



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 18/236 (7%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            L   L +  T  +I VG  LH + +K G+ +S L I   LL  Y +CG+   A ++FD M
Sbjct: 1498 LVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDARSARMVFDSM 1557

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
              +N  +W+AMI G+   G    SL +F+ M ++    N+  +  ++S  + +G ++   
Sbjct: 1558 GVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSACSYSGMVEEGG 1617

Query: 124  TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
              F  M +          +  M+    R+G   EA+   K++       +Q D  +    
Sbjct: 1618 RYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMP------VQRDVSLYGAF 1671

Query: 179  IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMM 233
            +  C   +  + G+ +   +L   L  +      LV NLY   G +   N+V ++M
Sbjct: 1672 LHGCGLYSRFDLGEVVVREML--QLHRNEACYYVLVSNLYASDGKWGQVNEVRDLM 1725


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/528 (26%), Positives = 230/528 (43%), Gaps = 106/528 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGNPTDA 60
            T++  L  +L+ C    SI   K +H   LK    +  L +  N    +Y +C     A
Sbjct: 115 QTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAA 174

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW-------- 106
             +FDEMP+RN FSW  MI G  + G      + F       ++P K  +S         
Sbjct: 175 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGL 234

Query: 107 -----------NMLISGFA--------------KAGELKTARTLFNDMPRRNAIAWNSMI 141
                       +++ GFA              K G ++ +  +FN M   N ++WN+MI
Sbjct: 235 DSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMI 294

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
                NG   EA  LF  + +        + + L +V  A   L  +  GK++ +     
Sbjct: 295 SGCTSNGLHLEAFDLFVRMKNGACTP---NMYTLVSVSKAVGKLVDVNMGKEVQNCASEL 351

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G++ + ++G++L+++Y K                               CG ++DAR VF
Sbjct: 352 GIEGNVLVGTALIDMYSK-------------------------------CGSLHDARSVF 380

Query: 262 DRTTDTSSV--MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           D       V   WN+MISGY  +    EAL L+ +M +NG+  D  T  SV +A ++   
Sbjct: 381 DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKS 440

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ G+ VHG   K G+  D++V S                            + N +   
Sbjct: 441 LQFGRVVHGMVLKCGL--DLMVVS----------------------------VNNAIADA 470

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           YS CG +ED + +F  M  + ++SW +++   SQ+    EAL  FC M +     ++F+ 
Sbjct: 471 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 530

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +SV+ +CA++  LE G QV   +   GLD+++ I ++L+D Y KCG I
Sbjct: 531 SSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSI 578



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 194/427 (45%), Gaps = 75/427 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++QSC    S+ +GK +H   + +G       ++  LL MY + G+  D+  +F+ M   
Sbjct: 227 IIQSCIGLDSLELGKMVHAQIVMRGFATHIF-VSTSLLNMYAKLGSIEDSYWVFNMMTEH 285

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------------- 99
           N  SWNAMI G    G   ++  LF  M                                
Sbjct: 286 NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ 345

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI--AWNSMIHCYVRNGF 149
                   + N      LI  ++K G L  AR++F+       +   WN+MI  Y ++G 
Sbjct: 346 NCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGC 405

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           ++EA+ L+ ++  +    +  D +   +V  A A   +L++G+ +H  +L  GLD   V 
Sbjct: 406 SQEALELYVQMCQN---GITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVV- 461

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                          S N              +A+   Y+ CG + D R+VFDR  +   
Sbjct: 462 ---------------SVN--------------NAIADAYSKCGFLEDVRKVFDRMEERDI 492

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V W ++++ Y  ++   EAL  F  MR  G   +  T +SVL +C+SL FLE+G+QVHG 
Sbjct: 493 VSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGL 552

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
            CK G+  +  + SAL+D Y+K G  ++A K+F ++   D +    +I+ Y+  G +EDA
Sbjct: 553 LCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDA 612

Query: 390 KHIFRTM 396
             +FR M
Sbjct: 613 LQLFRRM 619



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 174/378 (46%), Gaps = 66/378 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE-LNSDLVERLQCD 171
           ++K  E + A  +F++MP+RN  +W  MI     +G   +  + F E LNS ++     D
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILP----D 220

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
            F  + +I +C  L +LE GK +H+ I++ G      + +SL+N+Y K G    +  V N
Sbjct: 221 KFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFN 280

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
           MM E +                                V WN+MISG  SN    EA  L
Sbjct: 281 MMTEHNQ-------------------------------VSWNAMISGCTSNGLHLEAFDL 309

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M+      +  TL SV  A   L  +  GK+V   A ++G+  +V+V +AL+D YSK
Sbjct: 310 FVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSK 369

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G   DA        V+DT  +N        CG            P      WN+MI G 
Sbjct: 370 CGSLHDA------RSVFDTNFIN--------CG---------VNTP------WNAMISGY 400

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           SQ+G   EAL+L+  M +  +  D ++  SV +A A   SL+ G  V   V   GLD   
Sbjct: 401 SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV 460

Query: 472 I-ISTSLVDFYCKCGFIK 488
           + ++ ++ D Y KCGF++
Sbjct: 461 VSVNNAIADAYSKCGFLE 478



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 185/440 (42%), Gaps = 110/440 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC---FSWNA 77
           +++GK++     + GI  + L +   L+ MY +CG+  DA  +FD     NC     WNA
Sbjct: 338 VNMGKEVQNCASELGIEGNVL-VGTALIDMYSKCGSLHDARSVFD-TNFINCGVNTPWNA 395

Query: 78  MIEGFMKLGHKEKSLQL-------------------FNVMPQKNDFSWNMLISG------ 112
           MI G+ + G  +++L+L                   FN +       +  ++ G      
Sbjct: 396 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 455

Query: 113 ---------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
                          ++K G L+  R +F+ M  R+ ++W +++  Y ++    EA+  F
Sbjct: 456 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATF 515

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
             +     E    + F  ++V+ +CA L  LEYG+Q+H  +   GLD +           
Sbjct: 516 CLMRE---EGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTE----------- 561

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            KC +                   SALI  YA CG + +A +VFD+ ++   V W ++IS
Sbjct: 562 -KCIE-------------------SALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIIS 601

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  +    +AL LF +M  +G+  +A TL  VL ACS  G +E G              
Sbjct: 602 GYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEG-------------- 647

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            +     + D Y           +  E++ Y  I     I +    GR++DA    R MP
Sbjct: 648 -LFYFQQMEDGYG----------VVPEMEHYACI-----IDLLGRVGRLDDAMEFIRKMP 691

Query: 398 -NKSLISWNSMIVGLSQNGS 416
              + + W +++ G   +G+
Sbjct: 692 MEPNEMVWQTLLGGCRVHGN 711



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 1/124 (0%)

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +L N    VYS C     A  +F  MP +++ SW  MIVG +++G   +    FC M   
Sbjct: 156 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 215

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
            +  DKF+ +++I +C  + SLELG+ V A++ + G  +   +STSL++ Y K G I+ D
Sbjct: 216 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIE-D 274

Query: 491 EYYL 494
            Y++
Sbjct: 275 SYWV 278



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 140/332 (42%), Gaps = 55/332 (16%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  G+ +H   LK G+    + + N +   Y +CG   D   +FD M  R+  SW  ++
Sbjct: 440 SLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLV 499

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------------------- 106
             + +    E++L  F +M ++    N F++                             
Sbjct: 500 TAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLD 559

Query: 107 ------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                 + LI  +AK G +  A  +F+ +   + ++W ++I  Y ++G   +A++LF+ +
Sbjct: 560 TEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRM 619

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYG----KQIHSHILVNGLDFDSVLGSSLVNL 216
               +  ++ +A  L  V+ AC+    +E G    +Q+       G+  +    + +++L
Sbjct: 620 E---LSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGY---GVVPEMEHYACIIDL 673

Query: 217 YGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMN----DARRVFDRTTDTSSVM 271
            G+ G  + A + +  M  EP++     L+ G    G +      AR++     + S+  
Sbjct: 674 LGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSAT- 732

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +  + + YI      + L L + M+  GV ++
Sbjct: 733 YVLLSNTYIETGSYEDGLSLRNVMKDQGVKKE 764


>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
 gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
          Length = 867

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/528 (26%), Positives = 241/528 (45%), Gaps = 82/528 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTDALLLFDE 66
           +A +L  C    +++ GK +H + +K G    T    N L+ MY +CG    DA  +FD 
Sbjct: 143 IATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFA-GNALVSMYAKCGLVACDAYAVFDS 201

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKNDF------ 104
           +  ++  SWNAMI G  + G  +++  LF                N++P    F      
Sbjct: 202 IIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAH 261

Query: 105 -----------SW----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                       W          N L+S + K G  K A +LF  M  R+ ++WN++I  
Sbjct: 262 RCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAG 321

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y  NG   +++ +F  L S  +E L  D+  + +++ ACA L  L+ GKQ+H++IL +  
Sbjct: 322 YALNGEWLKSLHVFGNLVS--LEMLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPF 379

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
            F+               D ++ N               AL+S YA CG + +A   F  
Sbjct: 380 LFE---------------DTSAGN---------------ALVSFYAKCGYIEEAYHTFSM 409

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            +    + WNS++  +      +  L L H M +  +  D+ T+ +++  C+SL  ++  
Sbjct: 410 ISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKV 469

Query: 324 KQVHGHACKVGVI---DDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITV 379
           K++HG++ + G +       V +A+LD YSK G    A K+F  L +  + +  N++I+ 
Sbjct: 470 KEIHGYSIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISG 529

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y   G   DA  IF  M    L +WN M+   ++N  P +AL+LF  +    ++ D  ++
Sbjct: 530 YVGLGSHYDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTI 589

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            S+I  C  ++S+ L  Q    +     + D  +  +L+D Y KCG I
Sbjct: 590 MSLIPVCTQMASVHLLRQCHGYIIRSSFE-DLHLKGTLLDAYAKCGII 636



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 223/487 (45%), Gaps = 80/487 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+Q+H + L+   L++ + + N LL  Y++ G   +A  LF  M  R+  SWN +I G+ 
Sbjct: 264 GRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYA 323

Query: 84  KLGHKEKSLQLF-----------------NVMPQ------------------------KN 102
             G   KSL +F                 +++P                         ++
Sbjct: 324 LNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFED 383

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             + N L+S +AK G ++ A   F+ + R++ I+WNS++  +   G  R   R    L+ 
Sbjct: 384 TSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAF---GEKRHHSRFLSLLHV 440

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG---LDFDSVLGSSLVNLYGK 219
            L   ++ D+  + T+I  CA L  ++  K+IH + + +G         +G+++++ Y K
Sbjct: 441 MLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCATAPTVGNAILDAYSK 500

Query: 220 CGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           CG+   AN++   + E  +    ++LISGY   G   DA  +F   ++T    WN M+  
Sbjct: 501 CGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSETDLTTWNLMVRV 560

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y  N+   +AL LF K++  G+  D  T+ S++  C+ +  +   +Q HG+         
Sbjct: 561 YAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGY--------- 611

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
            I+ S+  D + K                       T++  Y+ CG I  A  IF++  +
Sbjct: 612 -IIRSSFEDLHLK----------------------GTLLDAYAKCGIIGYAYKIFQSSVD 648

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           K L+ + +MI G + +G   +AL+ F +M  + ++ D     S++SAC++   +  G ++
Sbjct: 649 KDLVMFTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKI 708

Query: 459 FARVTII 465
           F  +  I
Sbjct: 709 FDSIEKI 715



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 129/533 (24%), Positives = 230/533 (43%), Gaps = 115/533 (21%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + LA +L+SC+   + ++GK LH + +K+G ++  +  +  LL MY +CG   D   LFD
Sbjct: 38  EVLAAILKSCSALLASNLGKCLHSYVVKQGHVSCHVT-SKALLNMYAKCGMLDDCHKLFD 96

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKE------------------KSLQLFNVMP-------- 99
           +  R +   WN ++ G+ + G  +                   S+ +  V+P        
Sbjct: 97  QFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNL 156

Query: 100 ---------------QKNDFSWNMLISGFAKAGELKT-ARTLFNDMPRRNAIAWNSMIHC 143
                          + + F+ N L+S +AK G +   A  +F+ +  ++ ++WN+MI  
Sbjct: 157 NGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAG 216

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL---AALEYGKQIHSHILV 200
              NG  +EA  LF  +    V+    +   +A ++  CA      A   G+QIHS++L 
Sbjct: 217 LAENGLLKEAFSLFSLMMKGSVKP---NYATVANILPVCASFDENIAHRCGRQIHSYVL- 272

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
                             +  + ++   V N           AL+S Y   G+  +A  +
Sbjct: 273 ------------------QWPELSADVSVCN-----------ALLSFYLKVGRTKEAESL 303

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGF 319
           F        V WN++I+GY  N E  ++L +F  +     +L D+ T+ S+L AC+ L  
Sbjct: 304 FWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDN 363

Query: 320 LEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
           L+ GKQVH +  +   + +D    +AL+  Y+K                           
Sbjct: 364 LQAGKQVHAYILRHPFLFEDTSAGNALVSFYAK--------------------------- 396

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
               CG IE+A H F  +  K LISWNS++    +       L L   M KLD+R D  +
Sbjct: 397 ----CGYIEEAYHTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVT 452

Query: 439 LASVISACANISSLELGEQVFA---RVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + ++I  CA++  ++  +++     R   +   +   +  +++D Y KCG I+
Sbjct: 453 ILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCATAPTVGNAILDAYSKCGNIE 505



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 161/364 (44%), Gaps = 70/364 (19%)

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           + W S I     +    EA+  F     D     + D  +LA ++ +C+ L A   GK +
Sbjct: 1   MTWASTIRSLCVDSRHNEALSFFHHCLKDSAA-FKPDHEVLAAILKSCSALLASNLGKCL 59

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           HS+++  G     V   +L+N+Y K                               CG +
Sbjct: 60  HSYVVKQGHVSCHVTSKALLNMYAK-------------------------------CGML 88

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYI-SNNEDTEALLLFHKMRRNG-VLEDASTLASVLS 312
           +D  ++FD+      V+WN ++SGY  S   D + + +F  M  +G V+  + T+A+VL 
Sbjct: 89  DDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLP 148

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
            C+  G L  GK VHG+  K G                             E+   DT  
Sbjct: 149 VCARSGNLNGGKSVHGYVIKSGF----------------------------EM---DTFA 177

Query: 373 LNTMITVYSSCGRIE-DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
            N ++++Y+ CG +  DA  +F ++ +K ++SWN+MI GL++NG   EA  LF  M K  
Sbjct: 178 GNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGS 237

Query: 432 LRMDKFSLASVISACANIS---SLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ +  ++A+++  CA+     +   G Q+ + V     L +D  +  +L+ FY K G  
Sbjct: 238 VKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRT 297

Query: 488 KMDE 491
           K  E
Sbjct: 298 KEAE 301



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 135/294 (45%), Gaps = 37/294 (12%)

Query: 76  NAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134
           NA+++ + K G+ E + ++F N+  ++N  + N LISG+   G    A  +F+ M   + 
Sbjct: 492 NAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSETDL 551

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
             WN M+  Y  N    +A+ LF +L +   + ++ D   + ++I  C  +A++   +Q 
Sbjct: 552 TTWNLMVRVYAENDCPEQALELFLKLQT---QGMKPDVVTIMSLIPVCTQMASVHLLRQC 608

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H +I+ +  + D  L  +L++ Y KCG                       I GY      
Sbjct: 609 HGYIIRSSFE-DLHLKGTLLDAYAKCG-----------------------IIGY------ 638

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
             A ++F  + D   VM+ +MI GY  +    +AL  F  M   G+  D     S+LSAC
Sbjct: 639 --AYKIFQSSVDKDLVMFTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSAC 696

Query: 315 SSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           S  G +  G ++     K+ G+   +   + ++D  ++ G  S+A    +++ +
Sbjct: 697 SHAGRIAEGLKIFDSIEKIHGMKPTIEQFACVVDLLARGGHVSEAYSFVTKIPI 750



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 33/224 (14%)

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVL--EDASTLASVLSACSSLGFLEHGKQVHGH 329
           W S I     ++   EAL  FH   ++      D   LA++L +CS+L     GK +H +
Sbjct: 3   WASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLHSY 62

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE-D 388
             K G +   + + ALL+ Y+K GM  D  KLF +    D ++ N +++ YS  G+ + D
Sbjct: 63  VVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDAD 122

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
              +FR M +   +  +S+                              ++A+V+  CA 
Sbjct: 123 VMKVFRAMHSSGEVMPSSV------------------------------TIATVLPVCAR 152

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
             +L  G+ V   V   G + D     +LV  Y KCG +  D Y
Sbjct: 153 SGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAY 196


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 229/520 (44%), Gaps = 105/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           AR LQ C        G+ +H H +++G +    L  AN LL MY + G    A  LFD M
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDF------------------- 104
           P RN  S+  +++   + G  E +  LF  +     + N F                   
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 105 -----SWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                +W +           LI  ++    +  A  +FN + R++A+ W +M+ CY  N 
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A R+F ++    V   + + F L +V+ A   L ++  GK IH   +    D +  
Sbjct: 243 CPENAFRVFSKMR---VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPH 299

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G +L+++Y K                               CG + DAR  F+      
Sbjct: 300 VGGALLDMYAK-------------------------------CGDIKDARLAFEMIPYDD 328

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            ++ + MIS Y  +N++ +A  LF ++ R+ VL +  +L+SVL AC+++  L+ GKQ+H 
Sbjct: 329 VILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHN 388

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           HA K+G   D+ V +AL+D Y+K      + K+FS L+  + +  NT++           
Sbjct: 389 HAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV----------- 437

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                               VG SQ+G   EAL +FC M    +   + + +SV+ ACA+
Sbjct: 438 --------------------VGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +S+    Q+   +     ++D +I  SL+D Y KCG+I+
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 517



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 45/280 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +LQ+C     +  GKQ+H H +K G   S L + N L+  Y +C +   +L +F  +
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMP----------------------- 99
              N  SWN ++ GF + G  E++L +F       MP                       
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 485

Query: 100 ------QKNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                 +K+ F+      N LI  +AK G ++ A  +F  +  R+ I+WN++I  Y  +G
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
            A +A+ LF  +N   VE    +      ++  C+    + +G  +   + ++ G+    
Sbjct: 546 QAADALELFDRMNKSNVES---NDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSM 602

Query: 208 VLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALIS 246
              + +V L G+ G  N A Q + ++   P      AL+S
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 150/384 (39%), Gaps = 99/384 (25%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+F  A  +  C        G+ +H H++  G       G   ++L+        AN +L
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRG-------GVGRLDLF-------CANVLL 103

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           NM               Y   G +  ARR+FDR  + + V + +++  +    +   A  
Sbjct: 104 NM---------------YGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAA 148

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF ++R  G   +   L ++L    ++        VH  A K+G   +  V S L+D YS
Sbjct: 149 LFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYS 208

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PN------ 398
              + SDA  +F+ +   D ++   M++ YS     E+A  +F  M      PN      
Sbjct: 209 LCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTS 268

Query: 399 --KSLISWNSMIVGLSQNGSPIEA------------LDLFC------------------- 425
             K+ +   S+++G   +G  I+             LD++                    
Sbjct: 269 VLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDD 328

Query: 426 --------------NMN----KLDLRMDKFSL-------ASVISACANISSLELGEQVFA 460
                         N N    +L LR+ + S+       +SV+ AC N+  L+ G+Q+  
Sbjct: 329 VILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHN 388

Query: 461 RVTIIGLDSDQIISTSLVDFYCKC 484
               IG +SD  +  +L+DFY KC
Sbjct: 389 HAIKIGHESDLFVGNALMDFYAKC 412



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 9/150 (6%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T++ Y + +L++C +  SI    Q+H   ++K   N+   I N L+  Y +CG   DAL 
Sbjct: 464 TQVTY-SSVLRACASTASIRHAGQIHCS-IEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 521

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGE 118
           +F  +  R+  SWNA+I G+   G    +L+LF+ M     + ND ++  L+S  +  G 
Sbjct: 522 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGL 581

Query: 119 LKTARTLFNDMPRRNAIAWNSMIH--CYVR 146
           +    +LF+ M   + I   SM H  C VR
Sbjct: 582 VNHGLSLFDSMRIDHGIK-PSMEHYTCIVR 610



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 33/192 (17%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLDTYSKRGMPSDACK 360
           D+   A  L  C + G    G+ VHGH  + G +   D+  A+ LL+ Y K G  + A +
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF  +   + +   T++  ++  G  E A  +FR +       W          G  +  
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL------RW---------EGHEVNQ 162

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
             +   M KL + MD   LA  + +CA                 +G D +  + + L+D 
Sbjct: 163 F-VLTTMLKLAIAMDAAGLAGGVHSCA---------------WKLGHDHNAFVGSGLIDA 206

Query: 481 YCKCGFIKMDEY 492
           Y  C  +   E+
Sbjct: 207 YSLCSLVSDAEH 218


>gi|119638460|gb|ABL85051.1| hypothetical protein 57h21.26 [Brachypodium sylvaticum]
          Length = 753

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 226/481 (46%), Gaps = 18/481 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C    ++ +G+ +H   L+     +   +   L+ MY  CG       +FD++
Sbjct: 94  LSTVLSACARLEALELGRCVHGLALRSCSTGNVF-VGASLVTMYASCGVVDCLERVFDDV 152

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              N   WNA++ G +       + ++FN MP +N  SW  ++ G     ++  A  LFN
Sbjct: 153 DSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSWTAMVKGHVSVHDVGQAVELFN 212

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL--NSDLVERLQCDAFILATVIGACADL 185
            MP +N+++W  MI   V     REAV LF  L  N D V  +     IL  V+ A A L
Sbjct: 213 LMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDEVTNV-----ILVKVVNAYAGL 267

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            ++  G+ IH   + +G   D ++ +SLV +Y    D + A    + M        +A+I
Sbjct: 268 KSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARLEFDKMDRKQVGSWNAII 327

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
            GY    K+++A  +F+  T    V WNSMI+GYI +    +A  L+ KM    V E A+
Sbjct: 328 RGYIYAEKIDEAENIFESMTYRDKVSWNSMINGYIRDGRIADATELYSKMPEKNV-EAAT 386

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSE 364
            L S         F+++GK          +   DV+  +ALL  Y K G   DA  LF  
Sbjct: 387 ALMS--------WFIDNGKLGKARDMFYSLPQVDVMSCTALLFGYMKEGYLDDALDLFHR 438

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +     +  N MI  +   G++ +A  +F   P     + +  + GL+QNG   +AL L+
Sbjct: 439 MHKRTAVTYNVMIAGFLHQGKVAEAYKLFNESPAHDATTCSCFVTGLAQNGLIHDALKLY 498

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M   ++   +  ++S+IS C++ S +  G Q+ A    +G +   II  SL+  Y KC
Sbjct: 499 KKMLVSNMHTSESVVSSLISCCSHHSMIVHGLQLHATTIKLGFELYLIIQNSLISLYSKC 558

Query: 485 G 485
           G
Sbjct: 559 G 559



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 177/364 (48%), Gaps = 38/364 (10%)

Query: 99  PQKND----FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           P ++D     S N L+    +AG    AR +F+ MPRR+ ++WNS +  + R+G    A 
Sbjct: 17  PYEDDDGGVVSGNRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAA 76

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            LF EL    V   + D   L+TV+ ACA L ALE G+ +H   L +    +  +G+SLV
Sbjct: 77  GLFLELRRRGV---RPDGTSLSTVLSACARLEALELGRCVHGLALRSCSTGNVFVGASLV 133

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            +Y  CG  +   +V + +  P+    +AL+SG     ++ DARRVF+R    + V W +
Sbjct: 134 TMYASCGVVDCLERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSWTA 193

Query: 275 MISGYISNN-------------------------------EDTEALLLFHKMRRNGVLED 303
           M+ G++S +                               +  EA+ LF+ + RNG    
Sbjct: 194 MVKGHVSVHDVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDEVT 253

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
              L  V++A + L  +  G+ +HG + K G + D+I+ ++L+  Y       +A   F 
Sbjct: 254 NVILVKVVNAYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARLEFD 313

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
           ++        N +I  Y    +I++A++IF +M  +  +SWNSMI G  ++G   +A +L
Sbjct: 314 KMDRKQVGSWNAIIRGYIYAEKIDEAENIFESMTYRDKVSWNSMINGYIRDGRIADATEL 373

Query: 424 FCNM 427
           +  M
Sbjct: 374 YSKM 377



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 213/473 (45%), Gaps = 75/473 (15%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           SI  G+ +H   +K G ++  L I   L+ MY    +  +A L FD+M R+   SWNA+I
Sbjct: 269 SIGGGRCIHGFSVKSGFVHD-LIIEASLVAMYCNSLDIDEARLEFDKMDRKQVGSWNAII 327

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            G++     +++  +F  M  ++  SWN +I+G+ + G +  A  L++ MP +N  A  +
Sbjct: 328 RGYIYAEKIDEAENIFESMTYRDKVSWNSMINGYIRDGRIADATELYSKMPEKNVEAATA 387

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           ++  ++ NG   +A  +F  L    V+ + C A +                         
Sbjct: 388 LMSWFIDNGKLGKARDMFYSLPQ--VDVMSCTALLFG----------------------- 422

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
                            Y K G  + A  + + M +      + +I+G+ + GK+ +A +
Sbjct: 423 -----------------YMKEGYLDDALDLFHRMHKRTAVTYNVMIAGFLHQGKVAEAYK 465

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F+ +    +   +  ++G   N    +AL L+ KM  + +    S ++S++S CS    
Sbjct: 466 LFNESPAHDATTCSCFVTGLAQNGLIHDALKLYKKMLVSNMHTSESVVSSLISCCSHHSM 525

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           + HG Q+H    K+G                               ++Y  I+ N++I++
Sbjct: 526 IVHGLQLHATTIKLG------------------------------FELY-LIIQNSLISL 554

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           YS CG +  A++IF  M  + +++WN++I G + N     A+++F NM    +  D+ + 
Sbjct: 555 YSKCGEMVAAQNIFDQMVKRDVVTWNTLIHGYAFNSLGQNAIEMFKNMKIAQVDPDEITF 614

Query: 440 ASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
             V+SAC ++S LE  +  F  +T   G+  + +    +VD  C+ G ++  E
Sbjct: 615 LGVLSACNHMSLLEEAKHFFDVMTCDYGIAPNMMHYACMVDLLCRRGMVEEAE 667



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N ++  +   GR + A+ +F  MP + ++SWNS +   +++G+   A  LF  + +  +R
Sbjct: 29  NRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLFLELRRRGVR 88

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            D  SL++V+SACA + +LELG  V           +  +  SLV  Y  CG +
Sbjct: 89  PDGTSLSTVLSACARLEALELGRCVHGLALRSCSTGNVFVGASLVTMYASCGVV 142



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 12  LQSCNTHHSIHV-GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L SC +HHS+ V G QLH   +K G     L I N L+ +Y +CG    A  +FD+M +R
Sbjct: 516 LISCCSHHSMIVHGLQLHATTIKLG-FELYLIIQNSLISLYSKCGEMVAAQNIFDQMVKR 574

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +  +WN +I G+      + ++++F  M       ++ ++  ++S       L+ A+  F
Sbjct: 575 DVVTWNTLIHGYAFNSLGQNAIEMFKNMKIAQVDPDEITFLGVLSACNHMSLLEEAKHFF 634

Query: 127 NDMPRRNAIAWNSMIH-CYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M     IA N M + C V    R G   EA  L K +        + D+ I  +++ +
Sbjct: 635 DVMTCDYGIAPNMMHYACMVDLLCRRGMVEEAEGLMKSMP------FEPDSAIWTSLLSS 688

Query: 182 C 182
           C
Sbjct: 689 C 689


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 187/384 (48%), Gaps = 36/384 (9%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +S  + A  +  A ++F+ +P  N+  WN++I  Y  +     A+ +F ++   L   + 
Sbjct: 49  VSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQM---LHASVL 105

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D +     + +C   + +E G+QIH H+L  GL  D  + ++L++LY  CG    A  +
Sbjct: 106 PDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHL 165

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDA-RRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           L+ M E D    +AL+S YA  G M  A RRVF  T   + V WN+MI+GY      +E 
Sbjct: 166 LDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEV 225

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L+LF  M+  GV  D  TL SVLSAC+ +G L  G+ VH +  K G+  D  VA+AL+D 
Sbjct: 226 LVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDM 285

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           YSK                               CG IE A  +F +   K + +WNS+I
Sbjct: 286 YSK-------------------------------CGSIEKALEVFNSCLRKDISTWNSII 314

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGL 467
            GLS +GS   AL +F  M     + ++ +   V+SAC+    L+ G ++F   V + G+
Sbjct: 315 SGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGI 374

Query: 468 DSDQIISTSLVDFYCKCGFIKMDE 491
                    +VD   + G ++  E
Sbjct: 375 QPTIEHYGCMVDLLGRVGLLEEAE 398



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 148/297 (49%), Gaps = 29/297 (9%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q H+HIL +GL   +   S L+                            A +S  ++  
Sbjct: 25  QAHAHILKSGLIHSTFAASRLI----------------------------ASVSTNSHAQ 56

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A  +F R  + +S MWN++I  Y ++     AL +FH+M    VL D  T    L 
Sbjct: 57  AIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALK 116

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +C S   +E G+Q+HGH  K G+ DD+ + + L+  Y+  G   DA  L   +   D + 
Sbjct: 117 SCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVS 176

Query: 373 LNTMITVYSSCGRIEDA-KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
            N +++ Y+  G +E A + +F   P K+++SWN+MI G S  G   E L LF +M    
Sbjct: 177 WNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG 236

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ D  +L SV+SACA++ +L  GE V A +   G+  D  ++T+LVD Y KCG I+
Sbjct: 237 VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIE 293



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 171/392 (43%), Gaps = 77/392 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+SC +   +  G+Q+H H LK G L   L I N L+ +Y  CG   DA  L D M  R+
Sbjct: 115 LKSCGSFSGVEEGRQIHGHVLKTG-LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERD 173

Query: 72  CFSWNAMIEGFMKLGHKE-KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
             SWNA++  + + G  E  S ++F   P KN  SWN +I+G++ AG       LF DM 
Sbjct: 174 VVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ 233

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                                                ++ D   L +V+ ACA + AL  
Sbjct: 234 HAG----------------------------------VKPDNCTLVSVLSACAHVGALSQ 259

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H++I  NG+  D  + ++LV++Y KCG    A +V N        CL   IS    
Sbjct: 260 GEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNS-------CLRKDIS---- 308

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                WNS+ISG  ++     AL +F +M   G   +  T   V
Sbjct: 309 --------------------TWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCV 348

Query: 311 LSACSSLGFLEHGKQ-----VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           LSACS  G L+ G++     VH H    G+   +     ++D   + G+  +A +L  ++
Sbjct: 349 LSACSRAGLLDEGREMFNLMVHVH----GIQPTIEHYGCMVDLLGRVGLLEEAEELVQKM 404

Query: 366 KVYD-TILLNTMITVYSSCGRIEDAKHIFRTM 396
              + +++  +++    + G +E A+ + + +
Sbjct: 405 PQKEASVVWESLLGACRNHGNVELAERVAQKL 436



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 23/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++  G+ +H +  K GI      +A  L+ MY +CG+   AL +F+  
Sbjct: 244 LVSVLSACAHVGALSQGEWVHAYIDKNGISIDGF-VATALVDMYSKCGSIEKALEVFNSC 302

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            R++  +WN++I G    G  + +LQ+F+ M     + N+ ++  ++S  ++AG L   R
Sbjct: 303 LRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGR 362

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +FN M   + I      +  M+    R G   EA  L +++           + +  ++
Sbjct: 363 EMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEA------SVVWESL 416

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMK 234
           +GAC +   +E  +++   +    L+      SS V   N+Y   G +    +V   M+
Sbjct: 417 LGACRNHGNVELAERVAQKL----LELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMR 471


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/540 (26%), Positives = 239/540 (44%), Gaps = 88/540 (16%)

Query: 8   LARLLQSCNTHHSIHVGK--QLHLHFLKKGILNS--TLPIANRLLQMYMRCGNPTDA--- 60
           L  LL   +T H    G+  QLH H L  G+++S    P+A+RL++      +P  +   
Sbjct: 6   LCPLLAILSTRHPPSAGRLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHSPRP 65

Query: 61  ------LLLFDEMPRRNCFSWNAMIEGF---MKLGHKEKSLQLF-----NVMPQKNDFSW 106
                 LL     P  +   +NA +         G   + L L+     +  P    F +
Sbjct: 66  LLHALALLASLPTPPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSARPDHLTFPF 125

Query: 107 -------------------NMLISGF--------------AKAGELKTARTLFNDMPRRN 133
                              N+L  GF              A    +  AR LF+    R+
Sbjct: 126 LLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRD 185

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            ++WN++I  YVR G  REA+ +F  +  D    +  D   +  V+   A L  LE G++
Sbjct: 186 LVSWNTLIGGYVRRGVPREALEMFWRMVGD--GAVTPDEVTMIGVVSGSAQLRDLELGRR 243

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +H ++  +G+     L + ++++Y KCGD   A  V   + +      + +I GYA  G 
Sbjct: 244 LHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGL 303

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           M+DAR+VFD   +     WN++++GY+      EAL LFH M+   V  D  T+ ++LSA
Sbjct: 304 MDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSA 363

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           CS LG LE G  VH +  +  V   V++ + L+D YSK                      
Sbjct: 364 CSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSK---------------------- 401

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                    CG IE A  +F+ +P K+ ++W +MI GL+ +G    A+  F  M +L L+
Sbjct: 402 ---------CGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452

Query: 434 MDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            D+ +   V+SAC +   ++ G++ F+  V+   L+      + +VD   + G++   E+
Sbjct: 453 PDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEH 512



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 170/447 (38%), Gaps = 138/447 (30%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------- 95
           + N  +     C +  +A  LFD    R+  SWN +I G+++ G   ++L++F       
Sbjct: 157 VVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDG 216

Query: 96  NVMP-------------QKNDFS--------------------WNMLISGFAKAGELKTA 122
            V P             Q  D                       N+++  + K G+L+ A
Sbjct: 217 AVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERA 276

Query: 123 RTLF-------------------------------NDMPRRNAIAWNSMIHCYVRNGFAR 151
           +++F                               ++MP R+   WN+++  YV+    +
Sbjct: 277 KSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGK 336

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+RLF ++   +VE    D   +  ++ AC+ L ALE G  +H +I    +    +LG+
Sbjct: 337 EALRLFHDMQEAMVEP---DDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGT 393

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV++Y KCG+   A +V   + E +    +A+ISG AN G  + A + F R  +     
Sbjct: 394 NLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIEL---- 449

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                                      G+  D  T   VLSAC   G ++ G++      
Sbjct: 450 ---------------------------GLQPDEITFIGVLSACCHAGLVKEGQEFF---- 478

Query: 332 KVGVIDDVIVASALLDTYS-KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
                      S ++  Y  +R M   +C                M+ +    G +++A+
Sbjct: 479 -----------SLMVSKYHLERKMKHYSC----------------MVDLLGRAGYLDEAE 511

Query: 391 HIFRTMP-NKSLISWNSMIVGLSQNGS 416
           H+  TMP     + W ++      +G+
Sbjct: 512 HLVNTMPMEPDAVVWGALFFACRMHGN 538



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 127/297 (42%), Gaps = 78/297 (26%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT---------------------- 58
           + +G++LH +    G+   T+ + N ++ MY++CG+                        
Sbjct: 238 LELGRRLHGYVESHGV-RCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIV 296

Query: 59  ---------DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFS 105
                    DA  +FDEMP R+ F WNA++ G+++    +++L+LF+     M + +D +
Sbjct: 297 GYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDIT 356

Query: 106 WNMLISG-----------------------------------FAKAGELKTARTLFNDMP 130
              L+S                                    ++K G ++ A  +F ++P
Sbjct: 357 MVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP 416

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +NA+ W +MI     +G A  A++ F+ +   +   LQ D      V+ AC     ++ 
Sbjct: 417 EKNALTWTAMISGLANHGHADVAIKYFQRM---IELGLQPDEITFIGVLSACCHAGLVKE 473

Query: 191 GKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSAL 244
           G++  S ++V+    +  +   S +V+L G+ G  + A  ++N M  EPD     AL
Sbjct: 474 GQEFFS-LMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGAL 529



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 110/236 (46%), Gaps = 17/236 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C+   ++ +G  +H H++ +  ++ ++ +   L+ MY +CGN   A+ +F E+
Sbjct: 357 MVNLLSACSQLGALEMGMWVH-HYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEI 415

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P +N  +W AMI G    GH + +++ F  M     Q ++ ++  ++S    AG +K  +
Sbjct: 416 PEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQ 475

Query: 124 TLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M       R    ++ M+    R G+  EA  L   +       ++ DA +   +
Sbjct: 476 EFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMP------MEPDAVVWGAL 529

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             AC     +  G++  +  LV     DS +   L N+Y +      A++V  MM+
Sbjct: 530 FFACRMHGNITLGEKA-AMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMR 584


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 197/415 (47%), Gaps = 42/415 (10%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N L+  Y++     +A  +F+ MP RN  SW AM++G+M+ G   ++  LF  MP++N+ 
Sbjct: 83  NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW ++  G    G +  AR L++ MP ++ +A  +MI    R G   EA  +F E+    
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR--- 199

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            ER   +     T+I        ++  +++   +     +   V  +S++  Y   G   
Sbjct: 200 -ER---NVVTWTTMITGYRQNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRIE 251

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A +   +M        +A+I G+   G+++ ARRVFD   D  +  W  MI  Y     
Sbjct: 252 DAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGF 311

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           + EAL LF +M++ GV     +L S+LS C++L  L++G+QVH H  +    DDV VAS 
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASV 371

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+                               T+Y  CG +  AK +F    +K +I W
Sbjct: 372 LM-------------------------------TMYVKCGELVKAKLVFDRFSSKDIIMW 400

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           NS+I G + +G   EAL +F  M       +K +L ++++AC+    LE G ++F
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIF 455



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 210/468 (44%), Gaps = 74/468 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K+L L  L++  L ST    +  +    R G   +A   FD +  +   SWN+++ G+  
Sbjct: 2   KRLKL-ILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFS 60

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
            G  +++ QLF+ M ++N  SWN L+SG+ K   +  AR +F  MP RN ++W +M+  Y
Sbjct: 61  NGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGY 120

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-- 202
           ++ G   EA  LF  +     ER +    ++    G   D   ++  ++++  + V    
Sbjct: 121 MQEGMVGEAESLFWRMP----ERNEVSWTVM---FGGLIDDGRIDKARKLYDMMPVKDVV 173

Query: 203 -------------------LDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
                              L FD       V  ++++  Y +    + A ++  +M E  
Sbjct: 174 ASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT 233

Query: 238 DFCLSALISGYANCGKMND-------------------------------ARRVFDRTTD 266
           +   ++++ GY   G++ D                               ARRVFD   D
Sbjct: 234 EVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMED 293

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
             +  W  MI  Y     + EAL LF +M++ GV     +L S+LS C++L  L++G+QV
Sbjct: 294 RDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQV 353

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H H  +    DDV VAS L+  Y K G    A  +F      D I+ N++I+ Y+S G  
Sbjct: 354 HAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLG 413

Query: 387 EDAKHIFR------TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           E+A  IF       TMPNK  ++  +++   S  G   E L++F +M 
Sbjct: 414 EEALKIFHEMPSSGTMPNK--VTLIAILTACSYAGKLEEGLEIFESME 459



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 18/226 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C T  S+  G+Q+H H ++    +  + +A+ L+ MY++CG    A L+FD  
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQ-FDDDVYVASVLMTMYVKCGELVKAKLVFDRF 392

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             ++   WN++I G+   G  E++L++F+ MP      N  +   +++  + AG+L+   
Sbjct: 393 SSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGL 452

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F  M  +  +      ++  +    R G   +A+ L + +       ++ DA +   +
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMT------IKPDATVWGAL 506

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDS--VLGSSLVNLYGKCGD 222
           +GAC   + L+  +     +  N  D     VL SS+     K GD
Sbjct: 507 LGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGD 552



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
           I+  S  G+I +A+  F ++  K++ SWNS++ G   NG P EA  LF  M++ ++
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV 79


>gi|302764714|ref|XP_002965778.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
 gi|300166592|gb|EFJ33198.1| hypothetical protein SELMODRAFT_83991 [Selaginella moellendorffii]
          Length = 440

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 181/374 (48%), Gaps = 37/374 (9%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           G  +++L +F  +   N FSWN++I  + + G L+ AR LF+ MP++N + WN+MI  +V
Sbjct: 6   GQHQEALAVFQGLKSPNVFSWNIIILAYTQNGHLQEARELFSRMPKKNVVTWNTMIAAFV 65

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
            +G ++EA+ LF E+  +           L   + AC +L ALE  ++IHS I+  G + 
Sbjct: 66  HSGQSQEALDLFDEMGEE------PSKITLIHALQACENLGALEKAQEIHSRIIKLGWES 119

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
            ++L ++L N++ K G    A  +   M   D  C +++++ YA  G + +A ++F   +
Sbjct: 120 HTILSTALFNVFAKHGIMLQARAIFEKMPHRDVVCWNSMVAAYARRGHIEEAMKLFLSMS 179

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             ++  WNS+I+ Y+ +    EA  LF  M   GV     T  +VL AC+    L HGK 
Sbjct: 180 VRNASSWNSIITAYVQSGHSKEAFGLFKAMDLEGVEATKITFLAVLGACTGTNSLAHGKL 239

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH      G   D+  A+AL                               IT+Y+ CG 
Sbjct: 240 VHTLMVDAGFAVDITAATAL-------------------------------ITMYAKCGA 268

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            E +K +F  + + + I+W S++   + NG    A+D F  M       ++ +  +V+ A
Sbjct: 269 PEASKAVFLQISHHNCITWASLVAAYAHNGRGKAAVDFFRLMCLEAFTPNQIAFVNVLHA 328

Query: 446 CANISSLELGEQVF 459
           C++   LE G   F
Sbjct: 329 CSHGGLLECGTSFF 342



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 168/347 (48%), Gaps = 37/347 (10%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           MY  CG   +AL +F  +   N FSWN +I  + + GH +++ +LF+ MP+KN  +WN +
Sbjct: 1   MYGACGQHQEALAVFQGLKSPNVFSWNIIILAYTQNGHLQEARELFSRMPKKNVVTWNTM 60

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I+ F  +G+ + A  LF++M                      E  ++       L+  LQ
Sbjct: 61  IAAFVHSGQSQEALDLFDEM--------------------GEEPSKI------TLIHALQ 94

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
                      AC +L ALE  ++IHS I+  G +  ++L ++L N++ K G    A  +
Sbjct: 95  -----------ACENLGALEKAQEIHSRIIKLGWESHTILSTALFNVFAKHGIMLQARAI 143

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M   D  C +++++ YA  G + +A ++F   +  ++  WNS+I+ Y+ +    EA 
Sbjct: 144 FEKMPHRDVVCWNSMVAAYARRGHIEEAMKLFLSMSVRNASSWNSIITAYVQSGHSKEAF 203

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF  M   GV     T  +VL AC+    L HGK VH      G   D+  A+AL+  Y
Sbjct: 204 GLFKAMDLEGVEATKITFLAVLGACTGTNSLAHGKLVHTLMVDAGFAVDITAATALITMY 263

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
           +K G P  +  +F ++  ++ I   +++  Y+  GR + A   FR M
Sbjct: 264 AKCGAPEASKAVFLQISHHNCITWASLVAAYAHNGRGKAAVDFFRLM 310



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 142/281 (50%), Gaps = 3/281 (1%)

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +YG CG    A  V   +K P+ F  + +I  Y   G + +AR +F R    + V WN+M
Sbjct: 1   MYGACGQHQEALAVFQGLKSPNVFSWNIIILAYTQNGHLQEARELFSRMPKKNVVTWNTM 60

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I+ ++ + +  EAL LF +M   G      TL   L AC +LG LE  +++H    K+G 
Sbjct: 61  IAAFVHSGQSQEALDLFDEM---GEEPSKITLIHALQACENLGALEKAQEIHSRIIKLGW 117

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
               I+++AL + ++K G+   A  +F ++   D +  N+M+  Y+  G IE+A  +F +
Sbjct: 118 ESHTILSTALFNVFAKHGIMLQARAIFEKMPHRDVVCWNSMVAAYARRGHIEEAMKLFLS 177

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           M  ++  SWNS+I    Q+G   EA  LF  M+   +   K +  +V+ AC   +SL  G
Sbjct: 178 MSVRNASSWNSIITAYVQSGHSKEAFGLFKAMDLEGVEATKITFLAVLGACTGTNSLAHG 237

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           + V   +   G   D   +T+L+  Y KCG  +  +   +Q
Sbjct: 238 KLVHTLMVDAGFAVDITAATALITMYAKCGAPEASKAVFLQ 278



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 135/343 (39%), Gaps = 95/343 (27%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND- 103
           N ++  Y + G+  +A  LF  MP++N  +WN MI  F+  G  +++L LF+ M ++   
Sbjct: 27  NIIILAYTQNGHLQEARELFSRMPKKNVVTWNTMIAAFVHSGQSQEALDLFDEMGEEPSK 86

Query: 104 ----------------------------FSW-------NMLISGFAKAGELKTARTLFND 128
                                         W         L + FAK G +  AR +F  
Sbjct: 87  ITLIHALQACENLGALEKAQEIHSRIIKLGWESHTILSTALFNVFAKHGIMLQARAIFEK 146

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL--------NSDLVERLQC----DAFIL- 175
           MP R+ + WNSM+  Y R G   EA++LF  +        NS +   +Q     +AF L 
Sbjct: 147 MPHRDVVCWNSMVAAYARRGHIEEAMKLFLSMSVRNASSWNSIITAYVQSGHSKEAFGLF 206

Query: 176 ---------AT------VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
                    AT      V+GAC    +L +GK +H+ ++  G   D    ++L+ +Y KC
Sbjct: 207 KAMDLEGVEATKITFLAVLGACTGTNSLAHGKLVHTLMVDAGFAVDITAATALITMYAKC 266

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G              P+                   ++ VF + +  + + W S+++ Y 
Sbjct: 267 G-------------APE------------------ASKAVFLQISHHNCITWASLVAAYA 295

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            N     A+  F  M       +     +VL ACS  G LE G
Sbjct: 296 HNGRGKAAVDFFRLMCLEAFTPNQIAFVNVLHACSHGGLLECG 338



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T+I +LA +L +C   +S+  GK +H   +  G     +  A  L+ MY +CG P  +  
Sbjct: 217 TKITFLA-VLGACTGTNSLAHGKLVHTLMVDAG-FAVDITAATALITMYAKCGAPEASKA 274

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGE 118
           +F ++   NC +W +++  +   G  + ++  F +M       N  ++  ++   +  G 
Sbjct: 275 VFLQISHHNCITWASLVAAYAHNGRGKAAVDFFRLMCLEAFTPNQIAFVNVLHACSHGGL 334

Query: 119 LKTARTLFNDM 129
           L+   + F  M
Sbjct: 335 LECGTSFFQSM 345


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 214/455 (47%), Gaps = 99/455 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC    +   G+Q+H H LK G  +  L +   L+ MY++ G   DA  +FD+    
Sbjct: 140 VLKSCAKSKAFKEGQQIHGHVLKLGC-DLDLYVHTSLISMYVQNGRLEDAHKVFDKS--- 195

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                       P ++  S+  LI G+A  G ++ A+ LF+++P
Sbjct: 196 ----------------------------PHRDVVSYTALIKGYASRGYIENAQKLFDEIP 227

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+MI  Y   G  +EA+ LFK++   +   ++ D   + TV+ ACA   ++E 
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDM---MKTNVRPDESTMVTVVSACAQSGSIEL 284

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+H  I  +G                    F S  +++N           ALI  Y+ 
Sbjct: 285 GRQVHLWIDDHG--------------------FGSNLKIVN-----------ALIDLYSK 313

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG++  A  +F+R      + WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 314 CGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG ++ G+ +H +  K   GV +   + ++L+D Y+K                 
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK----------------- 416

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A  +F ++ +KSL SWN+MI G + +G    + DLF  M 
Sbjct: 417 --------------CGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMR 462

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           K+ ++ D  +   ++SAC++   L+LG  +F  +T
Sbjct: 463 KIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 182/372 (48%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  +     A++L+  + S     L  +++    V
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMIS---LGLLPNSYTFPFV 140

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   A + G+QIH H+L  G D D  + +SL+++Y + G    A++V +     D 
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI GYA+ G + +A+++FD       V WN+MISGY       EAL LF  M + 
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ +V+SAC+  G +E G+QVH      G   ++ + +AL+D YSK G    A
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I  NT+I  Y+     ++A  +F+ M              L    +P 
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM--------------LRSGETP- 365

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
                           +  ++ S++ ACA++ ++++G    V+    + G+ +   + TS
Sbjct: 366 ----------------NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 409

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 410 LIDMYAKCGDIE 421



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 45/228 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  ++ +C    SI +G+Q+HL     G   S L I N L+ +Y +CG    A  LF+ +
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHG-FGSNLKIVNALIDLYSKCGELETACGLFERL 327

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFS------------------ 105
           P ++  SWN +I G+  +   +++L LF  M       ND +                  
Sbjct: 328 PYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 387

Query: 106 W-------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
           W                     LI  +AK G+++ A  +FN +  ++  +WN+MI  +  
Sbjct: 388 WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAM 447

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           +G A  +  LF  +       +Q D      ++ AC+    L+ G+ I
Sbjct: 448 HGRADASFDLFSRMRKI---GIQPDDITFVGLLSACSHSGMLDLGRHI 492


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 223/515 (43%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C     +   KQ+H   +K   +     + N LL +Y+ CG   +A  +FD + ++
Sbjct: 34  VLKRCLKQKDLMAAKQVHDCIIKSR-MEQNAHVMNNLLHVYIECGRLQEARCVFDALVKK 92

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF-------------SW----- 106
           +  SWNAMI G+++  H E +++LF       V P    +              W     
Sbjct: 93  SGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVH 152

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L+  + K G +  AR +F+++   + I+W  MI  Y ++G  +
Sbjct: 153 ACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGK 212

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA RL  ++     E  + +A    +++ ACA   AL++ K++H H L  GL+ D  +G+
Sbjct: 213 EAYRLMLQMEQ---EGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGT 269

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV +Y K G  + A  V + MK  D                                V 
Sbjct: 270 ALVQMYAKSGSIDDARVVFDRMKVRD-------------------------------VVS 298

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN MI  +  +    EA  LF +M+  G   DA    S+L+AC+S G LE  K++H HA 
Sbjct: 299 WNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHAL 358

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G+  DV V +AL+  YSK G   DA  +F  +KV + +  N MI+             
Sbjct: 359 DSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMIS------------- 405

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             GL+Q+G   +AL++F  M    ++ D+ +  +V+SAC++   
Sbjct: 406 ------------------GLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGL 447

Query: 452 LELGE-QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ G  Q  A   + G++ D      +VD   + G
Sbjct: 448 VDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAG 482



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 189/388 (48%), Gaps = 65/388 (16%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           ++N    N L+  + + G L+ AR +F+ + +++  +WN+MI  YV +  A +A+RLF+E
Sbjct: 60  EQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFRE 119

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +     E +Q +A     ++ ACA L+AL++GK++H+ I   GL+ D  +G++L+ +YGK
Sbjct: 120 MCH---EGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGK 176

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                          CG +N+ARR+FD   +   + W  MI  Y
Sbjct: 177 -------------------------------CGSINEARRIFDNLMNHDIISWTVMIGAY 205

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             +    EA  L  +M + G   +A T  S+L+AC+S G L+  K+VH HA   G+  DV
Sbjct: 206 AQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDV 265

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V +AL+  Y+K                                G I+DA+ +F  M  +
Sbjct: 266 RVGTALVQMYAK-------------------------------SGSIDDARVVFDRMKVR 294

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            ++SWN MI   +++G   EA DLF  M     + D     S+++ACA+  +LE  +++ 
Sbjct: 295 DVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIH 354

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                 GL+ D  + T+LV  Y K G I
Sbjct: 355 RHALDSGLEVDVRVGTALVHMYSKSGSI 382



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 183/392 (46%), Gaps = 76/392 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C +  ++  GK++H   ++ G L S + +   LL+MY +CG+  +A  +FD +   
Sbjct: 135 ILKACASLSALKWGKEVHA-CIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNH 193

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW----- 106
           +  SW  MI  + + G+ +++ +L   M Q+                       W     
Sbjct: 194 DIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVH 253

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            L+  +AK+G +  AR +F+ M  R+ ++WN MI  +  +G   
Sbjct: 254 RHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGH 313

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  LF ++ +   E  + DA +  +++ ACA   ALE+ K+IH H L +GL+ D  +G+
Sbjct: 314 EAYDLFLQMQT---EGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGT 370

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV++Y K G                                ++DAR VFDR    + V 
Sbjct: 371 ALVHMYSKSGS-------------------------------IDDARVVFDRMKVRNVVS 399

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MISG   +    +AL +F +M  +GV  D  T  +VLSACS  G ++ G+  +    
Sbjct: 400 WNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMT 459

Query: 332 KV-GVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +V G+  DV   + ++D   + G   +A KLF
Sbjct: 460 QVYGIEPDVSHCNCMVDLLGRAGRLMEA-KLF 490



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 134/293 (45%), Gaps = 35/293 (11%)

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQV----LNMMKEPDDFCLSALISGYANCGKM 254
           L  GL  DS +   ++    K  D  +A QV    +    E +   ++ L+  Y  CG++
Sbjct: 20  LQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRL 79

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
            +AR VFD     S   WN+MI+GY+ +    +A+ LF +M   GV  +A T   +L AC
Sbjct: 80  QEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKAC 139

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           +SL  L+ GK+VH      G+  DV V +ALL  Y K G  ++A ++F  L  +D I   
Sbjct: 140 ASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWT 199

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
            MI  Y                               +Q+G+  EA  L   M +   + 
Sbjct: 200 VMIGAY-------------------------------AQSGNGKEAYRLMLQMEQEGFKP 228

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  +  S+++ACA+  +L+  ++V       GL+ D  + T+LV  Y K G I
Sbjct: 229 NAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSI 281



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 19/235 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  ++   K++H H L  G L   + +   L+ MY + G+  DA ++FD M  R
Sbjct: 337 ILNACASAGALEWVKKIHRHALDSG-LEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR 395

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           N  SWNAMI G  + G  + +L++F  M     + +  ++  ++S  + AG +   R+ +
Sbjct: 396 NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQY 455

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
             M +   I       N M+    R G   EA      +  D       D      ++G+
Sbjct: 456 LAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDP------DEATWGALLGS 509

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           C     +E G+ +    L   LD  +     L+ N+Y + G ++  + V  MM+E
Sbjct: 510 CRTYGNVELGELVAKERL--KLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRE 562


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 196/421 (46%), Gaps = 50/421 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y   G P +A  +FDEMP RN  SWN ++ G++K    E++  +F +MP++N  
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV 111

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  ++ G+ + G +  A  LF  MP RN ++W  M    +  G   +A +L+  +    
Sbjct: 112 SWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGK- 170

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                 D      +IG       ++  ++I   +     + + +  ++++  YG+    +
Sbjct: 171 ------DVVASTNMIGGLCREGRVDEAREIFDEMR----ERNVITWTTMITGYGQNKRVD 220

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDA--------------------------- 257
            A ++  +M E  +   ++++ GY   G++ DA                           
Sbjct: 221 VARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGE 280

Query: 258 ----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
               RRVFD+  D  +  W  MI  Y     + EAL LF +M+R GV     +L S+LS 
Sbjct: 281 IVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSV 340

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C++L  L++G+QVH H  +     DV VAS L+  Y K G    A  +F      D I+ 
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMW 400

Query: 374 NTMITVYSSCGRIEDAKHIFR------TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           N++I+ Y+S G  E+A  +F       TMPNK  ++  +++   S  G   E L++F +M
Sbjct: 401 NSIISGYASHGLGEEALKVFHEMPLSGTMPNK--VTLIAILTACSYGGKLEEGLEIFESM 458

Query: 428 N 428
            
Sbjct: 459 E 459



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 168/378 (44%), Gaps = 23/378 (6%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           IS  ++ G++  AR  F+ +  +   +WNS++  Y  NG  REA ++F E+    +    
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWN 83

Query: 170 --CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
                +I   +I    ++  +   + +             V  +++V  Y + G    A 
Sbjct: 84  GLVSGYIKNRMIEEARNVFEIMPERNV-------------VSWTAMVKGYVQEGMVVEAE 130

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
            +   M E ++   + +  G  + G+++DAR+++D       V   +MI G        E
Sbjct: 131 LLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDE 190

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A  +F +MR   V+    T  ++++       ++  +++     +V      +  +++L 
Sbjct: 191 AREIFDEMRERNVI----TWTTMITGYGQNKRVDVARKLF----EVMPEKTEVSWTSMLL 242

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y+  G   DA + F  + +   I  N MI      G I  A+ +F  M ++   +W  M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGM 302

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I    + G  +EAL+LF  M +  +R    SL S++S CA ++SL+ G QV A +     
Sbjct: 303 IKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362

Query: 468 DSDQIISTSLVDFYCKCG 485
           D D  +++ L+  Y KCG
Sbjct: 363 DGDVYVASVLMTMYVKCG 380



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 92/191 (48%), Gaps = 16/191 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C T  S+  G+Q+H H ++    +  + +A+ L+ MY++CG    A L+FD  
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQ-FDGDVYVASVLMTMYVKCGELVKAKLVFDRF 392

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P ++   WN++I G+   G  E++L++F+ MP      N  +   +++  +  G+L+   
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGL 452

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F  M  +  +      ++  +    R G   +A+ L   +       ++ DA +   +
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMT------IKPDATVWGAL 506

Query: 179 IGACADLAALE 189
           +GAC   + L+
Sbjct: 507 LGACKTHSRLD 517


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 211/443 (47%), Gaps = 65/443 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++ +T   + +G+ +H   +K  + + TL ++NRL+ +Y R  +   A+  FD++P  
Sbjct: 42  LERAISTGDVLRLGRAVHARLVKTALTSHTL-LSNRLVALYSRLPSSAAAVAAFDDLP-- 98

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE-LKTARTLFNDM 129
                                         KN  S+N L++   +  +    A  LF+ M
Sbjct: 99  -----------------------------HKNAHSYNTLLAALLRRPDTFPDALHLFDTM 129

Query: 130 PR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSD--LVERLQCDAFILATVIGACADL 185
           P   RN +++N+++   V +G   EA+R+   L  D  L   L  D F + +V  ACA +
Sbjct: 130 PADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGI 189

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            A    +++H  ++V+G++   ++ +++VN Y K      A  + + +   D+   +++I
Sbjct: 190 RAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMI 249

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           SGY    K+++A +VFD   D   V W ++ISG+  N E+  AL LF +M   GV     
Sbjct: 250 SGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTF 309

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
            L SVL AC+ LG +  GK++H   C +                 +R + SD   +F   
Sbjct: 310 ALVSVLGACAKLGLVTRGKELH---CSI----------------LRRSIGSDPFNIF--- 347

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                 + N ++ +YS CG +  A  +F  MP +  ISWNSM+ G S NG   ++L +F 
Sbjct: 348 ------IHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFE 401

Query: 426 NMNKLDLRMDKFSLASVISACAN 448
            M    +R    +  +V++AC++
Sbjct: 402 EMLVAGVRPTHVTFLAVLTACSH 424



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 151/309 (48%), Gaps = 11/309 (3%)

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+ +H+ ++   L   ++L + LV LY +     +A    + +   +    + L++ 
Sbjct: 52  LRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPHKNAHSYNTLLAA 111

Query: 248 Y-ANCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNEDTEALLLFHKMRRN-----G 299
                    DA  +FD     +   V +N+++S  + +    EAL +  ++ R+     G
Sbjct: 112 LLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPG 171

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D  T+ SV +AC+ +      +++HG     G+   VI+A+A+++ YSK     +A 
Sbjct: 172 LAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEAR 231

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            LF ++ + D +   +MI+ Y    ++++A  +F  MP+K  ++W ++I G  QNG    
Sbjct: 232 HLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDT 291

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ---IISTS 476
           AL+LF  M    +    F+L SV+ ACA +  +  G+++   +    + SD     I  +
Sbjct: 292 ALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNA 351

Query: 477 LVDFYCKCG 485
           LVD Y KCG
Sbjct: 352 LVDMYSKCG 360



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 124/251 (49%), Gaps = 31/251 (12%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NAM+  + K    E++  LF+ +  +++ +W  +ISG+ +  +L  A  +F+ MP ++ +
Sbjct: 215 NAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRV 274

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           AW ++I  + +NG    A+ LF+ +   L E +    F L +V+GACA L  +  GK++H
Sbjct: 275 AWTALISGHEQNGEEDTALELFERM---LAEGVSPTTFALVSVLGACAKLGLVTRGKELH 331

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             IL   +      GS   N+                      F  +AL+  Y+ CG M 
Sbjct: 332 CSILRRSI------GSDPFNI----------------------FIHNALVDMYSKCGDMT 363

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  VF R  +   + WNSM++G+  N    ++L +F +M   GV     T  +VL+ACS
Sbjct: 364 AAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACS 423

Query: 316 SLGFLEHGKQV 326
             G + +G+ +
Sbjct: 424 HSGLVSNGRLI 434



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 18/240 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFD 65
           L  +L +C     +  GK+LH   L++ I +    I   N L+ MY +CG+ T A+ +F 
Sbjct: 311 LVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFH 370

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKT 121
            MP R+  SWN+M+ GF   G  ++SL +F  M     +    ++  +++  + +G +  
Sbjct: 371 RMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSN 430

Query: 122 ARTLFNDM------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
            R +   M      PR  A  + + I    RN    EA+   K+L S +       A   
Sbjct: 431 GRLILESMEDHGVEPR--AEHYAAFIDALGRNRQLEEAIEFIKDLPSRIG---PGTAGSW 485

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             ++GAC     +E  +++ +  L      +S     L N+Y   G ++ A +V  +MKE
Sbjct: 486 GALLGACRLHGNIELAEEV-AEFLFKLEPGNSGRYVMLSNIYAAAGQWDDARRVRGLMKE 544



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 83/282 (29%)

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------- 101
           +AL +FD MP ++  +W A+I G  + G ++ +L+LF  M  +                 
Sbjct: 260 EALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACA 319

Query: 102 -------------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
                                    N F  N L+  ++K G++  A  +F+ MP R+ I+
Sbjct: 320 KLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPERDFIS 379

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI-- 194
           WNSM+  +  NG  ++++ +F+E+   LV  ++        V+ AC+    +  G+ I  
Sbjct: 380 WNSMVTGFSHNGLGKQSLAIFEEM---LVAGVRPTHVTFLAVLTACSHSGLVSNGRLILE 436

Query: 195 ------------HSHILVNGL--------------DFDSVLGSSLVN----LYGKC---G 221
                       H    ++ L              D  S +G         L G C   G
Sbjct: 437 SMEDHGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHG 496

Query: 222 DFNSANQVLNMM--KEPDDFCLSALISG-YANCGKMNDARRV 260
           +   A +V   +   EP +     ++S  YA  G+ +DARRV
Sbjct: 497 NIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQWDDARRV 538


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 229/520 (44%), Gaps = 105/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           AR LQ C        G+ +H H +++G +    L  AN LL MY + G    A  LFD M
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDF------------------- 104
           P RN  S+  +++   + G  E +  LF  +     + N F                   
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 105 -----SWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                +W +           LI  ++    +  A  +FN + R++A+ W +M+ CY  N 
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A R+F ++    V   + + F L +V+ A   L ++  GK IH   +    D +  
Sbjct: 243 CPENAFRVFSKMR---VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPH 299

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G +L+++Y K                               CG + DAR  F+      
Sbjct: 300 VGGALLDMYAK-------------------------------CGDIKDARLAFEMIPYDD 328

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            ++ + MIS Y  +N++ +A  LF ++ R+ VL +  +L+SVL AC+++  L+ GKQ+H 
Sbjct: 329 VILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHN 388

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           HA K+G   D+ V +AL+D Y+K      + K+FS L+  + +  NT++           
Sbjct: 389 HAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV----------- 437

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                               VG SQ+G   EAL +FC M    +   + + +SV+ ACA+
Sbjct: 438 --------------------VGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +S+    Q+   +     ++D +I  SL+D Y KCG+I+
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 517



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 168/389 (43%), Gaps = 69/389 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +LQ+C     +  GKQ+H H +K G   S L + N L+  Y +C +   +L +F  +
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMP----------------------- 99
              N  SWN ++ GF + G  E++L +F       MP                       
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 485

Query: 100 ------QKNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                 +K+ F+      N LI  +AK G ++ A  +F  +  R+ I+WN++I  Y  +G
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
            A +A+ LF  +N   VE    +      ++  C+    + +G  +   + ++ G+    
Sbjct: 546 QAADALELFDRMNKSNVES---NDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSM 602

Query: 208 VLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG---YANC--GKMNDARRV- 260
              + +V L G+ G  N A Q + ++   P      AL+S    + N   G+ +  + + 
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 662

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
            +   +T+ V+ ++M   Y +     +  LL   MR  GV +              L ++
Sbjct: 663 IEPQDETTYVLLSNM---YAAAGSLDQVALLRKSMRNIGVRK-----------VPGLSWV 708

Query: 321 EHGKQVHGHACKVGVID--DVIVASALLD 347
           E   ++  HA  VG +D  D+ V +A+L+
Sbjct: 709 EIKGEI--HAFSVGSVDHPDMRVINAMLE 735



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 150/384 (39%), Gaps = 99/384 (25%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+F  A  +  C        G+ +H H++  G       G   ++L+        AN +L
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRG-------GVGRLDLF-------CANVLL 103

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           NM               Y   G +  ARR+FDR  + + V + +++  +    +   A  
Sbjct: 104 NM---------------YGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAA 148

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF ++R  G   +   L ++L    ++        VH  A K+G   +  V S L+D YS
Sbjct: 149 LFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYS 208

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PN------ 398
              + SDA  +F+ +   D ++   M++ YS     E+A  +F  M      PN      
Sbjct: 209 LCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTS 268

Query: 399 --KSLISWNSMIVGLSQNGSPIEA------------LDLFC------------------- 425
             K+ +   S+++G   +G  I+             LD++                    
Sbjct: 269 VLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDD 328

Query: 426 --------------NMN----KLDLRMDKFSL-------ASVISACANISSLELGEQVFA 460
                         N N    +L LR+ + S+       +SV+ AC N+  L+ G+Q+  
Sbjct: 329 VILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHN 388

Query: 461 RVTIIGLDSDQIISTSLVDFYCKC 484
               IG +SD  +  +L+DFY KC
Sbjct: 389 HAIKIGHESDLFVGNALMDFYAKC 412



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 9/150 (6%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T++ Y + +L++C +  SI    Q+H   ++K   N+   I N L+  Y +CG   DAL 
Sbjct: 464 TQVTY-SSVLRACASTASIRHAGQIHCS-IEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 521

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGE 118
           +F  +  R+  SWNA+I G+   G    +L+LF+ M     + ND ++  L+S  +  G 
Sbjct: 522 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGL 581

Query: 119 LKTARTLFNDMPRRNAIAWNSMIH--CYVR 146
           +    +LF+ M   + I   SM H  C VR
Sbjct: 582 VNHGLSLFDSMRIDHGIK-PSMEHYTCIVR 610



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 33/192 (17%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLDTYSKRGMPSDACK 360
           D+   A  L  C + G    G+ VHGH  + G +   D+  A+ LL+ Y K G  + A +
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF  +   + +   T++  ++  G  E A  +FR                L   G  +  
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR---------------LRWEGHEVNQ 162

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
             +   M KL + MD   LA  + +CA                 +G D +  + + L+D 
Sbjct: 163 F-VLTTMLKLAIAMDAAGLAGGVHSCA---------------WKLGHDHNAFVGSGLIDA 206

Query: 481 YCKCGFIKMDEY 492
           Y  C  +   E+
Sbjct: 207 YSLCSLVSDAEH 218


>gi|255547600|ref|XP_002514857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545908|gb|EEF47411.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 832

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 199/393 (50%), Gaps = 53/393 (13%)

Query: 107 NMLISGFAKAGE-LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
           N L+  +AK  + L  A  LF+++  R+   W  +I     +GFA+   R FK + S L 
Sbjct: 319 NHLLDLYAKNSQNLSHAHKLFDEILCRDVRTWTILI-----SGFAQ--TRNFK-MVSGLF 370

Query: 166 ERLQCDA-----FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
            R+Q +      F L++V+  C+ +  +  GK IH  IL +G+ FD VL +S+++LY KC
Sbjct: 371 RRMQKEGVCPNQFTLSSVLKCCSSICEIRNGKGIHGWILTSGIGFDIVLENSILDLYVKC 430

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G F+ A  + + M E      + +I GY   G +  +  +F      +   WN++I G +
Sbjct: 431 GAFDYAKSLFDSMAEKGTVSWNIMIGGYLRMGDVESSLELFQSLYFKNIASWNTIIDGLM 490

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            N  +T AL L +KM  +G+  ++ T +  L+  S L  LE GKQ+HG   ++ + D+  
Sbjct: 491 KNGFETIALELLYKMVESGLGFNSVTFSVALNLVSCLVNLELGKQIHGRILRLIIHDNGF 550

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK- 399
           + ++LLD Y K                               CG++E+A  +FR +P + 
Sbjct: 551 IRNSLLDMYCK-------------------------------CGKMEEASRMFRNVPVEI 579

Query: 400 -------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
                   ++SW+SMI G  +NG    AL  F +M    + +DKF+L SV+SACAN   L
Sbjct: 580 SCDDPLGEIVSWSSMISGYVRNGEYEYALRTFISMVHEQVLVDKFTLTSVVSACANTGCL 639

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ELG Q+ A +  IG   D  + +SL+D Y KCG
Sbjct: 640 ELGRQIHAHILKIGHKVDAHLGSSLIDMYAKCG 672



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 208/462 (45%), Gaps = 109/462 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C++   I  GK +H   L  GI    + + N +L +Y++CG        FD  
Sbjct: 385 LSSVLKCCSSICEIRNGKGIHGWILTSGI-GFDIVLENSILDLYVKCGA-------FD-- 434

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                  +  LF+ M +K   SWN++I G+ + G+++++  LF 
Sbjct: 435 ----------------------YAKSLFDSMAEKGTVSWNIMIGGYLRMGDVESSLELFQ 472

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRL-FKELNSDLVERLQCDAFILATVIGACADLA 186
            +  +N  +WN++I   ++NGF   A+ L +K + S L        F +A  + +C  L 
Sbjct: 473 SLYFKNIASWNTIIDGLMKNGFETIALELLYKMVESGL--GFNSVTFSVALNLVSC--LV 528

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            LE GKQIH                                ++L ++   + F  ++L+ 
Sbjct: 529 NLELGKQIH-------------------------------GRILRLIIHDNGFIRNSLLD 557

Query: 247 GYANCGKMNDARRVFDRTTDTSS--------VMWNSMISGYISNNEDTEALLLFHKMRRN 298
            Y  CGKM +A R+F       S        V W+SMISGY+ N E   AL  F  M   
Sbjct: 558 MYCKCGKMEEASRMFRNVPVEISCDDPLGEIVSWSSMISGYVRNGEYEYALRTFISMVHE 617

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            VL D  TL SV+SAC++ G LE G+Q+H H  K+G   D  + S+L+D Y+K       
Sbjct: 618 QVLVDKFTLTSVVSACANTGCLELGRQIHAHILKIGHKVDAHLGSSLIDMYAK------- 670

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                   CG + DA+ IF+   + +++ W SMI G + +G   
Sbjct: 671 ------------------------CGSLNDAQMIFKENDDPNVVLWTSMIFGCALHGQGR 706

Query: 419 EALDLF-CNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           EA+ +F C MN+  +  ++ +  SV++AC +   LE G + F
Sbjct: 707 EAVRVFKCMMNE-GITPNEITFISVLTACNHAGLLEEGCKYF 747



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 2/242 (0%)

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           N   ++ A ++FD         W  +ISG+           LF +M++ GV  +  TL+S
Sbjct: 328 NSQNLSHAHKLFDEILCRDVRTWTILISGFAQTRNFKMVSGLFRRMQKEGVCPNQFTLSS 387

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL  CSS+  + +GK +HG     G+  D+++ +++LD Y K G    A  LF  +    
Sbjct: 388 VLKCCSSICEIRNGKGIHGWILTSGIGFDIVLENSILDLYVKCGAFDYAKSLFDSMAEKG 447

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T+  N MI  Y   G +E +  +F+++  K++ SWN++I GL +NG    AL+L   M +
Sbjct: 448 TVSWNIMIGGYLRMGDVESSLELFQSLYFKNIASWNTIIDGLMKNGFETIALELLYKMVE 507

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             L  +  + +  ++  + + +LELG+Q+  R+  + +  +  I  SL+D YCKCG  KM
Sbjct: 508 SGLGFNSVTFSVALNLVSCLVNLELGKQIHGRILRLIIHDNGFIRNSLLDMYCKCG--KM 565

Query: 490 DE 491
           +E
Sbjct: 566 EE 567


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 215/487 (44%), Gaps = 87/487 (17%)

Query: 40  TLPIANR-----LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQL 94
            +P+ N      LL  Y RCG   +A  LFD MP RN  SWNAM+ G+++ G  E++ +L
Sbjct: 99  AMPVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERAREL 158

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP------------------------ 130
           F++MP +ND SW  +ISG+ K   L+ AR LF+  P                        
Sbjct: 159 FDMMPSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAE 218

Query: 131 -------RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
                  RR+ ++WN MI  Y R G  + A  LF E+        Q D      V+    
Sbjct: 219 ELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMP-------QKDTISWTAVMRGYL 271

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
               ++   ++   I     D D V  ++++  + +    + A ++   M E D    + 
Sbjct: 272 QNGDVDASWKVFQDI----PDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNT 327

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           ++ G+   G M  A   F    +     WN++ISG+    +D  AL L  +M R G+  D
Sbjct: 328 ILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGH----KDEGALALLSEMIRGGLRPD 383

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            +TL+ V+S C+SL  L +GK VH +A K G   D +V S+L+  YSK G+ ++A ++F 
Sbjct: 384 EATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFK 443

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            L   DT+  N MI  Y                               + +G   EAL L
Sbjct: 444 LLVQRDTVTWNAMIATY-------------------------------AYHGMASEALKL 472

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI---IGLDSDQIISTSLVDF 480
           F  M K   R D  +  SV+SACA+   L  G + F  +     +   SD    + +VD 
Sbjct: 473 FNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLTPRSDHY--SCMVDL 530

Query: 481 YCKCGFI 487
             + GFI
Sbjct: 531 LGRLGFI 537



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 193/426 (45%), Gaps = 58/426 (13%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FDEMP RN F+WN MI G +       + ++F+ MP +N  SW  L++G+A+ G +  AR
Sbjct: 66  FDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMPVRNPVSWAALLTGYARCGRVAEAR 125

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            LF+ MP RN ++WN+M+  Y+RNG    A  LF  + S      + D   L  + G   
Sbjct: 126 ELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPS------RNDVSWLTMISG--- 176

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLS 242
                                            Y K      A ++ ++    P   C +
Sbjct: 177 ---------------------------------YIKKRRLREARELFDLSPSHPTSVC-N 202

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           AL+SGY     + DA  +F R      V WN MI+GY        A  LF +M +    +
Sbjct: 203 ALLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQ----K 258

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKL 361
           D  +  +V+      G+L++G           + D DV+  + ++  + +     DA +L
Sbjct: 259 DTISWTAVMR-----GYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRL 313

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F+E+   D +  NT++  +   G +  A   FR MP K   SWN++I G    G    AL
Sbjct: 314 FAEMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGHKDEG----AL 369

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
            L   M +  LR D+ +L+ VIS CA++ +L  G+ V       G + D ++ +SL+  Y
Sbjct: 370 ALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMY 429

Query: 482 CKCGFI 487
            KCG I
Sbjct: 430 SKCGLI 435



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C +  ++  GK +HL+ +K G  +  L + + L+ MY +CG   +A  +F  +
Sbjct: 387 LSVVISICASLVALGYGKMVHLYAVKTGFEHDAL-VMSSLISMYSKCGLIAEASQVFKLL 445

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-----SWNMLISGFAKAGELKTA 122
            +R+  +WNAMI  +   G   ++L+LFN M  K+ F     ++  ++S  A  G+L   
Sbjct: 446 VQRDTVTWNAMIATYAYHGMASEALKLFNKM-TKDGFRPDHATFLSVLSACAHKGDLYEG 504

Query: 123 RTLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
              F  M       PR +   ++ M+    R GF  +A    +++ SD    LQ +A+  
Sbjct: 505 CRYFRSMQEDWNLTPRSD--HYSCMVDLLGRLGFIYQAYDFTRKIPSD----LQINAW-- 556

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            T+  AC     ++ G+ I   +L      D  + + L N+Y     ++SA  V  +MKE
Sbjct: 557 ETLFSACNAHGDVQLGEVIAKDVL-QARPSDGGMYTLLANIYASKEMWSSAASVRGVMKE 615



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 60/253 (23%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN-------------- 282
           D F  +A+I+ +   G++  ARRVFD   + +   WN MISG + N              
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP 101

Query: 283 -----------------NEDTEALLLFHKMR---------------RNGVLEDASTLASV 310
                                EA  LF +M                RNG++E A  L  +
Sbjct: 102 VRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDM 161

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVID-----------DVIVASALLDTYSKRGMPSDAC 359
           + + + + +L     + G+  K  + +              V +ALL  Y       DA 
Sbjct: 162 MPSRNDVSWL---TMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAE 218

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           +LF  ++  D +  N MIT Y+  GR++ A+ +F  MP K  ISW +++ G  QNG    
Sbjct: 219 ELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDA 278

Query: 420 ALDLFCNMNKLDL 432
           +  +F ++   D+
Sbjct: 279 SWKVFQDIPDRDV 291


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 229/519 (44%), Gaps = 107/519 (20%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLP----IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW 75
           ++H  + LH   L  G    T P     A++L+ +Y+  G+   A L F  +P +   +W
Sbjct: 42  NLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFLTFRALPHKPIIAW 101

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISG------------------- 112
           NA++ G + +GH  K++  ++ M Q     +++++ +++                     
Sbjct: 102 NAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMHG 161

Query: 113 ---------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
                          FAK G ++ AR +F +MP R+  +W ++I   + NG   EA+ LF
Sbjct: 162 KTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLF 221

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
           +++ S   E L  D+ I+A+++ AC  L A++ G  +    + +G               
Sbjct: 222 RKMRS---EGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGF-------------- 264

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                            E D +  +A+I  Y  CG   +A RVF     +  V W+++I+
Sbjct: 265 -----------------ESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIA 307

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  N    E+  L+  M   G+  +A    SVL A   L  L+ GK++H    K G++ 
Sbjct: 308 GYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMS 367

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           DV+V SAL                               I +Y++CG I++A+ IF    
Sbjct: 368 DVVVGSAL-------------------------------IVMYANCGSIKEAESIFECTS 396

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           +K ++ WNSMIVG +  G    A   F  +   + R +  ++ S++  C  + +L  G++
Sbjct: 397 DKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKE 456

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           +   VT  GL  +  +  SL+D Y KCGF+++ E    Q
Sbjct: 457 IHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQ 495



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 206/450 (45%), Gaps = 83/450 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C++ H++ +G+ +H     K   N  +  A  ++ M+ +CG+  DA  +F+EMP R
Sbjct: 139 VLKACSSLHALQLGRWVHETMHGKTKANVYVQCA--VIDMFAKCGSVEDARRMFEEMPDR 196

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           +  SW A+I G M  G   ++L LF       +MP                         
Sbjct: 197 DLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQ 256

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + + +  N +I  + K G+   A  +F+ M   + ++W+++I  Y +N   +
Sbjct: 257 VCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQ 316

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E+ +L+  +   +   L  +A +  +V+ A   L  L+ GK++H+ +L  GL  D V+GS
Sbjct: 317 ESYKLYIGM---INVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGS 373

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                          ALI  YANCG + +A  +F+ T+D   ++
Sbjct: 374 -------------------------------ALIVMYANCGSIKEAESIFECTSDKDIMV 402

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNSMI GY    +   A   F ++       +  T+ S+L  C+ +G L  GK++HG+  
Sbjct: 403 WNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVT 462

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  +V V ++L+D YSK G      K+F ++ V +    NTMI+   S G+ E    
Sbjct: 463 KSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLA 522

Query: 392 IFRTM------PNKSLISWNSMIVGLSQNG 415
            +  M      PNK  +++ S++   S  G
Sbjct: 523 FYEQMKEEGNRPNK--VTFISLLSACSHAG 550


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 214/491 (43%), Gaps = 106/491 (21%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S + +   LL MY + G  +DA  +FD MP+RN FSW+ M+ G+      E++  LF +M
Sbjct: 45  SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 104

Query: 99  -----PQKNDFSW-----------------------------------NMLISGFAKAGE 118
                 +K++F                                     N L++ +AKAG 
Sbjct: 105 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 164

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +  A  +F     RN+I W++MI  Y +NG A  AV +F ++++      +   F    V
Sbjct: 165 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTE---FTFVGV 221

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + A +DL AL  GKQ H  ++  G +         V +Y K                   
Sbjct: 222 LNASSDLGALAVGKQAHGLMVKLGFE---------VQIYVK------------------- 253

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              SAL+  YA CG + DA+  FD+  +   V+W +M+SG++ N E  EAL L+ +M + 
Sbjct: 254 ---SALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKE 310

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G++   ST+AS L AC+ +  LE GKQ+H    K G+     V SAL   YSK G   D 
Sbjct: 311 GIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDG 370

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
             +F  +   D I                               +WNS+I G SQNG   
Sbjct: 371 MSVFRRIPDRDVI-------------------------------AWNSIISGFSQNGCGN 399

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSL 477
            ALDLF  M       D  +  +++ AC+++  ++ G + F+ +T   GL         +
Sbjct: 400 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 459

Query: 478 VDFYCKCGFIK 488
           VD   + G +K
Sbjct: 460 VDILSRAGMLK 470



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 21/238 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C    ++  GKQLH   +K G L    P+ + L  MY +CGN  D + +F  +
Sbjct: 319 IASGLRACAGIAALEPGKQLHTQIVKYG-LGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 377

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM----LISGFAKAGELKTAR 123
           P R+  +WN++I GF + G    +L LF  M  +     N+    ++   +  G +    
Sbjct: 378 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 437

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILA 176
             F+ M +   +      +  M+    R G  +EA         D +E +  D    +  
Sbjct: 438 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEA--------KDFIESITIDHGTCLWR 489

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
            V+GAC  L   + G      ++  G   DS     L N+Y     +N   +V ++M+
Sbjct: 490 IVLGACRSLRDFDVGAYAGERLMELGTG-DSSAYILLSNIYASQRKWNDVERVRHLMR 546



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           ACK+ S   V +  +  +++ +Y   G + DA+ +F  MP ++  SW++M+ G +     
Sbjct: 37  ACKIPS--AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCS 94

Query: 418 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
            EA DLF  M  +      +F   +V+SA +    L +GEQ+   +   GL     +  S
Sbjct: 95  EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENS 154

Query: 477 LVDFYCKCG 485
           LV  Y K G
Sbjct: 155 LVTMYAKAG 163


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 192/402 (47%), Gaps = 71/402 (17%)

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
           H  KS  LF+    K       LI G+ K   +  AR LF++MP R+ + WNSMI  +V 
Sbjct: 26  HILKSGSLFSFFGHK-------LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVS 78

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G  +EA+ L+  +   L E +  DA+  + +  A +++     G++ H   +V G +  
Sbjct: 79  RGKTKEAIELYDNM---LFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEV- 134

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                         D F  + ++  YA  GKM DAR VFDR  D
Sbjct: 135 -----------------------------SDGFVATGIVDMYAKFGKMKDARFVFDRVLD 165

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V++ ++I GY     D EAL +F  M  + +  +  TLASVL +C +LG L +GK +
Sbjct: 166 KDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLI 225

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG   K G+  + +VAS                               +++T+YS C  +
Sbjct: 226 HGLVVKSGL--ESVVASQ-----------------------------TSLLTMYSKCNMV 254

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           ED+  +F ++   S ++W S IVGL QNG    AL +F  M +  +  + F+ +S++ AC
Sbjct: 255 EDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHAC 314

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++++ LE GEQ+ A    +G+D ++ +  +L+  Y KCG ++
Sbjct: 315 SSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVE 356



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 217/478 (45%), Gaps = 107/478 (22%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K LH H LK G L S     ++L+  Y++C   T+A  LFDEMP R+  +WN+MI   + 
Sbjct: 21  KSLHTHILKSGSLFSFF--GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVS 78

Query: 85  LGHKEKSLQLFN------VMPQKNDFS--------------------------------- 105
            G  +++++L++      V+P    FS                                 
Sbjct: 79  RGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGF 138

Query: 106 -WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
               ++  +AK G++K AR +F+ +  ++ + + ++I  Y + G   EA+ +F+++   +
Sbjct: 139 VATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDM---V 195

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
             R++ + + LA+V+ +C +L  L  GK IH  ++ +GL  +SV+ S             
Sbjct: 196 GSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGL--ESVVASQ------------ 241

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                            ++L++ Y+ C  + D+ +VF+     S V W S I G + N  
Sbjct: 242 -----------------TSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGR 284

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           +  AL +F +M R  +  +  T +S+L ACSSL  LE G+Q+H    K+GV  +  V +A
Sbjct: 285 EEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAA 344

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  Y K G    A  +F  L   D + +NTMI  Y                        
Sbjct: 345 LIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAY------------------------ 380

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
                  +QNG   EAL+LF  M KL  + +  +  S++ AC N   +E G Q+F+ +
Sbjct: 381 -------AQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLI 431


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 228/518 (44%), Gaps = 109/518 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L RLL +C T  S+   + LH   L  G+L + L    +LL  Y   G+   A  + DE 
Sbjct: 26  LHRLLPACATLPSL---RALHARLLAHGLLRA-LRARTKLLSCYAALGDLASARRVLDET 81

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKND-------------------- 103
           PR + +++   +      G    +L L   M    P+ +D                    
Sbjct: 82  PRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRY 141

Query: 104 ----------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                           F  N L+  +AKAG+L+ AR +F+ +  RN ++W SM+   ++N
Sbjct: 142 GRRLHCNAVKAGGADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQN 201

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           GFA E + LF E+     ER+    + +A+V+ AC  L +L  G+ +H  ++ +G+ F+ 
Sbjct: 202 GFAEEGLALFNEMRE---ERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNP 258

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                          F  +A++  Y  CG++ DARR+FD     
Sbjct: 259 -------------------------------FITAAVLDMYVKCGEVEDARRLFDELGFV 287

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V+W +MI GY  N    +ALLLF   +   ++ ++ T+A+VLSA + L  L  G+ +H
Sbjct: 288 DLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIH 347

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             + K+ VI++ +V +AL+D Y+K       CK  SE                       
Sbjct: 348 AMSVKLLVIENDVVMNALVDMYAK-------CKALSE----------------------- 377

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A  IF  + NK +++WNS+I G  +N    EAL LF  M       D  S+ + +SAC 
Sbjct: 378 -ANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACV 436

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  L +G+            S+  ++T+L++ Y KC 
Sbjct: 437 CLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCA 474



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/475 (25%), Positives = 210/475 (44%), Gaps = 106/475 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G++LH + +K G  +    + N L+ MY + G+  +A  +FD +  RN  SW +M+ G +
Sbjct: 142 GRRLHCNAVKAGGADGF--VMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCL 199

Query: 84  KLGHKEKSLQLFN------VMPQK---------------------------------NDF 104
           + G  E+ L LFN      V+P +                                 N F
Sbjct: 200 QNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPF 259

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
               ++  + K GE++ AR LF+++   + + W +MI  Y +NG   +A+ LF +     
Sbjct: 260 ITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKK--- 316

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              +  ++  +ATV+ A A L  L  G+ IH+                            
Sbjct: 317 FVHIVPNSVTIATVLSASAQLRNLSLGRLIHA---------------------------- 348

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                + ++   +D  ++AL+  YA C  +++A  +F R ++   V WNS+I+GY+ N+ 
Sbjct: 349 ---MSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDM 405

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL+LF +MR  G   DA ++ + LSAC  LG L  GK  H +A K   + +V V +A
Sbjct: 406 GNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTA 465

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           LL+ Y+K                               C  +  A+ +F  M  ++ ++W
Sbjct: 466 LLNLYNK-------------------------------CADLPSAQRVFSEMSERNSVTW 494

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            +MI G    G    ++DL   M K +++ ++    S++S C++   + +G+  F
Sbjct: 495 GAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCF 549



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 187/470 (39%), Gaps = 110/470 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S+H G+ +H   +K G++ +   I   +L MY++CG   DA  LFDE+
Sbjct: 226 MASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPF-ITAAVLDMYVKCGEVEDARRLFDEL 284

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ--------------------- 100
              +   W  MI G+ + G    +L LF      +++P                      
Sbjct: 285 GFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGR 344

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       +ND   N L+  +AK   L  A  +F  +  ++ + WNS+I  YV N 
Sbjct: 345 LIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVEND 404

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF ++    V+    DA  +   + AC  L  L  GK  H++ +      +  
Sbjct: 405 MGNEALMLFSQMR---VQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVY 461

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+NLY KC D  S                               A+RVF   ++ +
Sbjct: 462 VNTALLNLYNKCADLPS-------------------------------AQRVFSEMSERN 490

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK---- 324
           SV W +MI GY    +   ++ L +KM ++ +  +     S+LS CS  G +  GK    
Sbjct: 491 SVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFD 550

Query: 325 ----------QVHGHACKVGVIDDVIVASALLDTYSKRGMPSD---------ACKLFSEL 365
                      +  +AC V V+         L+   K  MP+D          CKL S L
Sbjct: 551 SMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRL 610

Query: 366 KVYDTILLNTMI-------------TVYSSCGRIEDAKHIFRTMPNKSLI 402
           +  +  +   M+              +Y+S GR + +  I R M  + L+
Sbjct: 611 EFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGLV 660



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 135/326 (41%), Gaps = 68/326 (20%)

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           VE L     +L  ++ ACA L +L   + +H+ +L +GL         L  L  +     
Sbjct: 16  VEHLPHGGALLHRLLPACATLPSL---RALHARLLAHGL---------LRALRAR----- 58

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                            + L+S YA  G +  ARRV D T       +   +  + +   
Sbjct: 59  -----------------TKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAAGR 101

Query: 285 DTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
             +AL L   MRR      +D   L+  L A        +G+++H +A K G  D  +  
Sbjct: 102 HADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVKAGGADGFV-- 159

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
                                         +N ++ +Y+  G +E+A+ +F  +  ++++
Sbjct: 160 ------------------------------MNCLVDMYAKAGDLENARKVFDRILGRNVV 189

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW SM+ G  QNG   E L LF  M +  +   ++++ASV+ AC  + SL  G  V   V
Sbjct: 190 SWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSV 249

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIK 488
              G+  +  I+ +++D Y KCG ++
Sbjct: 250 IKHGMVFNPFITAAVLDMYVKCGEVE 275


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/528 (26%), Positives = 230/528 (43%), Gaps = 106/528 (20%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGNPTDA 60
            T++  L  +L+ C    SI   K +H   LK    +  L +  N    +Y +C     A
Sbjct: 61  QTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAA 120

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW-------- 106
             +FDEMP+RN FSW  MI G  + G      + F       ++P K  +S         
Sbjct: 121 CGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGL 180

Query: 107 -----------NMLISGFA--------------KAGELKTARTLFNDMPRRNAIAWNSMI 141
                       +++ GFA              K G ++ +  +FN M   N ++WN+MI
Sbjct: 181 DSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMI 240

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
                NG   EA  LF  + +        + + L +V  A   L  +  GK++ +     
Sbjct: 241 SGCTSNGLHLEAFDLFVRMKNGACTP---NMYTLVSVSKAVGKLVDVNMGKEVQNCASEL 297

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G++ + ++G++L+++Y K                               CG ++DAR VF
Sbjct: 298 GIEGNVLVGTALIDMYSK-------------------------------CGSLHDARSVF 326

Query: 262 DRTTDTSSV--MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           D       V   WN+MISGY  +    EAL L+ +M +NG+  D  T  SV +A ++   
Sbjct: 327 DTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKS 386

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ G+ VHG   K G+  D++V S                            + N +   
Sbjct: 387 LQFGRVVHGMVLKCGL--DLMVVS----------------------------VNNAIADA 416

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           YS CG +ED + +F  M  + ++SW +++   SQ+    EAL  FC M +     ++F+ 
Sbjct: 417 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 476

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +SV+ +CA++  LE G QV   +   GLD+++ I ++L+D Y KCG I
Sbjct: 477 SSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSI 524



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 194/427 (45%), Gaps = 75/427 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++QSC    S+ +GK +H   + +G       ++  LL MY + G+  D+  +F+ M   
Sbjct: 173 IIQSCIGLDSLELGKMVHAQIVMRGFATHIF-VSTSLLNMYAKLGSIEDSYWVFNMMTEH 231

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------------- 99
           N  SWNAMI G    G   ++  LF  M                                
Sbjct: 232 NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQ 291

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI--AWNSMIHCYVRNGF 149
                   + N      LI  ++K G L  AR++F+       +   WN+MI  Y ++G 
Sbjct: 292 NCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGC 351

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           ++EA+ L+ ++  +    +  D +   +V  A A   +L++G+ +H  +L  GLD   V 
Sbjct: 352 SQEALELYVQMCQN---GITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVV- 407

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                          S N              +A+   Y+ CG + D R+VFDR  +   
Sbjct: 408 ---------------SVN--------------NAIADAYSKCGFLEDVRKVFDRMEERDI 438

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V W ++++ Y  ++   EAL  F  MR  G   +  T +SVL +C+SL FLE+G+QVHG 
Sbjct: 439 VSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGL 498

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
            CK G+  +  + SAL+D Y+K G  ++A K+F ++   D +    +I+ Y+  G +EDA
Sbjct: 499 LCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDA 558

Query: 390 KHIFRTM 396
             +FR M
Sbjct: 559 LQLFRRM 565



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 174/378 (46%), Gaps = 66/378 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE-LNSDLVERLQCD 171
           ++K  E + A  +F++MP+RN  +W  MI     +G   +  + F E LNS ++     D
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILP----D 166

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
            F  + +I +C  L +LE GK +H+ I++ G      + +SL+N+Y K G    +  V N
Sbjct: 167 KFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFN 226

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
           MM E +                                V WN+MISG  SN    EA  L
Sbjct: 227 MMTEHNQ-------------------------------VSWNAMISGCTSNGLHLEAFDL 255

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M+      +  TL SV  A   L  +  GK+V   A ++G+  +V+V +AL+D YSK
Sbjct: 256 FVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSK 315

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G   DA        V+DT  +N        CG            P      WN+MI G 
Sbjct: 316 CGSLHDA------RSVFDTNFIN--------CG---------VNTP------WNAMISGY 346

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           SQ+G   EAL+L+  M +  +  D ++  SV +A A   SL+ G  V   V   GLD   
Sbjct: 347 SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV 406

Query: 472 I-ISTSLVDFYCKCGFIK 488
           + ++ ++ D Y KCGF++
Sbjct: 407 VSVNNAIADAYSKCGFLE 424



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 185/440 (42%), Gaps = 110/440 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC---FSWNA 77
           +++GK++     + GI  + L +   L+ MY +CG+  DA  +FD     NC     WNA
Sbjct: 284 VNMGKEVQNCASELGIEGNVL-VGTALIDMYSKCGSLHDARSVFD-TNFINCGVNTPWNA 341

Query: 78  MIEGFMKLGHKEKSLQL-------------------FNVMPQKNDFSWNMLISG------ 112
           MI G+ + G  +++L+L                   FN +       +  ++ G      
Sbjct: 342 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 401

Query: 113 ---------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
                          ++K G L+  R +F+ M  R+ ++W +++  Y ++    EA+  F
Sbjct: 402 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATF 461

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
             +     E    + F  ++V+ +CA L  LEYG+Q+H  +   GLD +           
Sbjct: 462 CLMRE---EGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTE----------- 507

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            KC +                   SALI  YA CG + +A +VFD+ ++   V W ++IS
Sbjct: 508 -KCIE-------------------SALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIIS 547

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  +    +AL LF +M  +G+  +A TL  VL ACS  G +E G              
Sbjct: 548 GYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEG-------------- 593

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            +     + D Y           +  E++ Y  I     I +    GR++DA    R MP
Sbjct: 594 -LFYFQQMEDGYG----------VVPEMEHYACI-----IDLLGRVGRLDDAMEFIRKMP 637

Query: 398 -NKSLISWNSMIVGLSQNGS 416
              + + W +++ G   +G+
Sbjct: 638 MEPNEMVWQTLLGGCRVHGN 657



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 1/124 (0%)

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +L N    VYS C     A  +F  MP +++ SW  MIVG +++G   +    FC M   
Sbjct: 102 VLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNS 161

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
            +  DKF+ +++I +C  + SLELG+ V A++ + G  +   +STSL++ Y K G I+ D
Sbjct: 162 GILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIE-D 220

Query: 491 EYYL 494
            Y++
Sbjct: 221 SYWV 224



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/332 (19%), Positives = 140/332 (42%), Gaps = 55/332 (16%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  G+ +H   LK G+    + + N +   Y +CG   D   +FD M  R+  SW  ++
Sbjct: 386 SLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLV 445

Query: 80  EGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------------------- 106
             + +    E++L  F +M ++    N F++                             
Sbjct: 446 TAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLD 505

Query: 107 ------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                 + LI  +AK G +  A  +F+ +   + ++W ++I  Y ++G   +A++LF+ +
Sbjct: 506 TEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRM 565

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYG----KQIHSHILVNGLDFDSVLGSSLVNL 216
               +  ++ +A  L  V+ AC+    +E G    +Q+       G+  +    + +++L
Sbjct: 566 E---LSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGY---GVVPEMEHYACIIDL 619

Query: 217 YGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMN----DARRVFDRTTDTSSVM 271
            G+ G  + A + +  M  EP++     L+ G    G +      AR++     + S+  
Sbjct: 620 LGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSAT- 678

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +  + + YI      + L L + M+  GV ++
Sbjct: 679 YVLLSNTYIETGSYEDGLSLRNVMKDQGVKKE 710


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 228/511 (44%), Gaps = 102/511 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C+  +   +G  LH   L  G L+    IA+ L+  Y + G    A  +FD MP R
Sbjct: 67  LLKACSFLNLFSLGLTLHQRILVSG-LSLDAYIASSLINFYAKFGFADVARKVFDYMPER 125

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           N   W  +I  + + G   ++  LF+ M ++                             
Sbjct: 126 NVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCA 185

Query: 102 ------NDFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                 +D +  N +++ + K G ++ +R LF+ M  R+ ++WNS+I  Y + G   E +
Sbjct: 186 ILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVL 245

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            L K +    ++  +       +V+   A    L+ G+ +H  IL  G   D+ + +SL+
Sbjct: 246 LLLKTMR---LQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLI 302

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
            +Y K G                               K++ A R+F+R++D   V+W +
Sbjct: 303 VVYLKGG-------------------------------KIDIAFRMFERSSDKDVVLWTA 331

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MISG + N    +AL +F +M + GV    +T+ASV++AC+ LG    G  + G+  +  
Sbjct: 332 MISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILR-- 389

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                                        EL + D    N+++T+Y+ CG ++ +  +F 
Sbjct: 390 ----------------------------QELPL-DVATQNSLVTMYAKCGHLDQSSIVFD 420

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            M  + L+SWN+M+ G +QNG   EAL LF  M   +   D  ++ S++  CA+   L L
Sbjct: 421 MMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHL 480

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G+ + + V   GL    ++ TSLVD YCKCG
Sbjct: 481 GKWIHSFVIRNGLRPCILVDTSLVDMYCKCG 511



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 212/499 (42%), Gaps = 115/499 (23%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH--------KEK 90
           S + ++N +L +Y +CGN   +  LFD M  R+  SWN++I  + ++G+        K  
Sbjct: 192 SDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTM 251

Query: 91  SLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR------------------- 131
            LQ F   PQ    ++  ++S  A  GELK  R L   + R                   
Sbjct: 252 RLQGFEAGPQ----TFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLK 307

Query: 132 ----------------RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                           ++ + W +MI   V+NG A +A+ +F+++   L   ++     +
Sbjct: 308 GGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQM---LKFGVKPSTATM 364

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A+VI ACA L +   G  I  +IL   L  D    +SLV +Y K                
Sbjct: 365 ASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAK---------------- 408

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                          CG ++ +  VFD       V WN+M++GY  N    EAL LF++M
Sbjct: 409 ---------------CGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEM 453

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R +    D+ T+ S+L  C+S G L  GK +H    + G+   ++V ++L+D Y K    
Sbjct: 454 RSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK---- 509

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                                      CG ++ A+  F  MP+  L+SW+++IVG   +G
Sbjct: 510 ---------------------------CGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHG 542

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIIS 474
               AL  +    +  ++ +     SV+S+C++   +E G  ++  +T   G+  D    
Sbjct: 543 KGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHH 602

Query: 475 TSLVDFYCKCGFIKMDEYY 493
             +VD   + G  +++E Y
Sbjct: 603 ACVVDLLSRAG--RVEEAY 619



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 133/328 (40%), Gaps = 65/328 (19%)

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           S L   +  DA+   +++ AC+ L     G  +H  ILV+GL  D+ + SSL+N Y K G
Sbjct: 51  SMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFG 110

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
             + A +V + M E +    + +I  Y+  G++                           
Sbjct: 111 FADVARKVFDYMPERNVVPWTTIIGCYSRTGRV--------------------------- 143

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
                EA  LF +MRR G+   + T+ S+L   S L    H + +HG A   G + D+ +
Sbjct: 144 ----PEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELA---HVQCLHGCAILYGFMSDINL 196

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           ++++L+ Y K G    + KLF  +   D +  N++I+ Y+  G I               
Sbjct: 197 SNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNI--------------- 241

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
                            E L L   M          +  SV+S  A+   L+LG  +  +
Sbjct: 242 ----------------CEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQ 285

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +   G   D  + TSL+  Y K G I +
Sbjct: 286 ILRAGFYLDAHVETSLIVVYLKGGKIDI 313



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 16/202 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LLQ C +   +H+GK +H   ++ G L   + +   L+ MY +CG+   A   F++M
Sbjct: 465 IVSLLQGCASTGQLHLGKWIHSFVIRNG-LRPCILVDTSLVDMYCKCGDLDTAQRCFNQM 523

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P  +  SW+A+I G+   G  E +L+ ++   +     N   +  ++S  +  G ++   
Sbjct: 524 PSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGL 583

Query: 124 TLFNDMPRRNAIAWNSMIHCYV-----RNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            ++  M +   IA +   H  V     R G   EA  ++K+   D V        +L  +
Sbjct: 584 NIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLD------VLGII 637

Query: 179 IGACADLAALEYGKQIHSHILV 200
           + AC      E G  I + IL+
Sbjct: 638 LDACRANGNNELGDTIANDILM 659



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 34/216 (15%)

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N+ I+ + +     + L  +  M +  V  DA T  S+L ACS L     G  +H     
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILV 89

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
            G+  D  +AS+L++ Y+K G    A K+F  +   + +   T+I  YS  GR+ +A  +
Sbjct: 90  SGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSL 149

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  M  + +              S +  L L   +++L       +    +  CA     
Sbjct: 150 FDEMRRQGI------------QPSSVTVLSLLFGVSEL-------AHVQCLHGCA----- 185

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
                      + G  SD  +S S+++ Y KCG I+
Sbjct: 186 ----------ILYGFMSDINLSNSMLNVYGKCGNIE 211


>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
 gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
          Length = 830

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 145/541 (26%), Positives = 242/541 (44%), Gaps = 122/541 (22%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           + T +  LA  L++C   H++  GK+LH   +  G L+  L +AN ++ MY+ C +  +A
Sbjct: 7   ISTTVTDLAASLRAC---HTLPKGKELHAQIVSDG-LDKNLHLANGIVHMYLVCKSVDNA 62

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMP--------------- 99
             +FD+M  R+   W  M+  + ++GH +++  LF+      V+P               
Sbjct: 63  RKVFDKMASRDAGLWAPMMAAYARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACSES 122

Query: 100 -------------QKNDFSWNM-----LISGFAKAGELKTARTLF-NDMPRRNAIAWNSM 140
                        Q +DF W++     L+  +AK G +  AR +F N + R+N ++W +M
Sbjct: 123 GSLAEGRRVHRRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTM 182

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           +  YV  G   +A+ LF E+   L E +  +     +V+ AC     L+ G+++H  I  
Sbjct: 183 VSAYVERGCLEQALTLFIEM---LQEGVAPNEITYVSVLNAC----DLDAGRKVHRLIEQ 235

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +GLD D+ +G++L+ +Y +CG    A+ V                               
Sbjct: 236 SGLDSDAFVGNALIKMYRRCGSLEDASLV------------------------------- 264

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD   D + ++WNSMI+GY S NE    L  F KM  +G   D  TL +VL AC+    L
Sbjct: 265 FDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWKGDKHTLLTVLDACAKSSTL 324

Query: 321 EHG--KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
           +    + +H  A + G+  D +V +AL+   S++G    A  +F  L+  D    N M +
Sbjct: 325 QASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDSLRAKDLAAWNCMFS 384

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKF 437
            Y+  GR+ DA  +   M                                KLD +R DK 
Sbjct: 385 AYAKHGRLRDAMELQEQM--------------------------------KLDQVRPDKV 412

Query: 438 SLASVISACANISS---LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           +  S++SAC    S   LE G++    +   G   D ++ T+LV  Y  CG  ++D+  L
Sbjct: 413 TFVSILSACTATGSSLGLETGKKTHEEILEQGYRLDAVLGTALVRMYAACG--RLDDAKL 470

Query: 495 M 495
           +
Sbjct: 471 V 471



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 231/526 (43%), Gaps = 118/526 (22%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            I Y++ +L +C+    +  G+++H   +++  L+S   + N L++MY RCG+  DA L+
Sbjct: 211 EITYVS-VLNACD----LDAGRKVH-RLIEQSGLDSDAFVGNALIKMYRRCGSLEDASLV 264

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND----------------- 103
           FD +  RN   WN+MI G+  L   + +L+ F  M     K D                 
Sbjct: 265 FDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWKGDKHTLLTVLDACAKSSTL 324

Query: 104 ---------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                                     L+   ++ G+ K+A+ +F+ +  ++  AWN M  
Sbjct: 325 QASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDSLRAKDLAAWNCMFS 384

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA---LEYGKQIHSHIL 199
            Y ++G  R+A+ L +++  D   +++ D     +++ AC    +   LE GK+ H  IL
Sbjct: 385 AYAKHGRLRDAMELQEQMKLD---QVRPDKVTFVSILSACTATGSSLGLETGKKTHEEIL 441

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             G   D+VLG++LV +Y                               A CG+++DA+ 
Sbjct: 442 EQGYRLDAVLGTALVRMY-------------------------------AACGRLDDAKL 470

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF++      + W +M+  Y       EA + F +++  G   D   L + L AC++L  
Sbjct: 471 VFEKMESRDLISWTTMLGAYTQARLLDEASITFRRIQLEGHTPDRVALIAALGACTNL-- 528

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
               +  H    ++G   D +VA+ALL+                               V
Sbjct: 529 -SSARDFHERIRQLGWEKDPLVANALLE-------------------------------V 556

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           YS+CG +EDA   F  +   S+ISWN +I   ++ G P  A DL   M       D  +L
Sbjct: 557 YSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHPDRAFDLLRAMELQGHNPDSVTL 616

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           A+VI++ A++     G+ +   +   G++ D +++T+LV+FY KCG
Sbjct: 617 ATVINSRASLQLFRKGKIIHDSILEAGMEIDSVVATALVNFYGKCG 662



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 184/467 (39%), Gaps = 120/467 (25%)

Query: 11  LLQSCNTHHS---IHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L +C    S   +  GK+ H   L++G  L++ L  A  L++MY  CG   DA L+F++
Sbjct: 417 ILSACTATGSSLGLETGKKTHEEILEQGYRLDAVLGTA--LVRMYAACGRLDDAKLVFEK 474

Query: 67  MPRRNCFSWNAMIEGFMKL----------------GHKEKSLQLFNVMP----------- 99
           M  R+  SW  M+  + +                 GH    + L   +            
Sbjct: 475 MESRDLISWTTMLGAYTQARLLDEASITFRRIQLEGHTPDRVALIAALGACTNLSSARDF 534

Query: 100 ---------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                    +K+    N L+  ++  G L+ A   F+ +   + I+WN +I  + R G  
Sbjct: 535 HERIRQLGWEKDPLVANALLEVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHP 594

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
             A  L + +    ++    D+  LATVI + A L     GK IH  IL  G++ DSV+ 
Sbjct: 595 DRAFDLLRAME---LQGHNPDSVTLATVINSRASLQLFRKGKIIHDSILEAGMEIDSVVA 651

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LVN                                Y  CG    AR +F       +V
Sbjct: 652 TALVNF-------------------------------YGKCGDFATARSIFQGVGAADNV 680

Query: 271 M-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + WNS ++ Y  +   +EAL +  +M + GV   A T  SVLS C             GH
Sbjct: 681 VTWNSTLAAYAQSGHASEALHVLAEMVQQGVAPTAVTFVSVLSVC-------------GH 727

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILL----NTMITVYSSCG 384
           A                      G+    C LFS L+  YD   +      MI + +  G
Sbjct: 728 A----------------------GVADVGCHLFSSLRWDYDMDPIPEHYGCMIDLLARGG 765

Query: 385 RIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            +E+A+ + +TMP     I W +++ G   +G+ ++   +F  M  L
Sbjct: 766 WLEEARQLLKTMPTTPDSIKWMALLSGC--HGASVDKTGVFMAMQLL 810



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 197/472 (41%), Gaps = 62/472 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFL--KKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           L  +L +C    ++       +H L  + G+ + TL +   L+++    G+   A ++FD
Sbjct: 311 LLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTL-VGTALVKIKSEQGDRKSAKMVFD 369

Query: 66  EMPRRNCFSWNAMIEGFMKLG------HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
            +  ++  +WN M   + K G        ++ ++L  V P K  F  ++L +  A    L
Sbjct: 370 SLRAKDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFV-SILSACTATGSSL 428

Query: 120 ------KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
                 KT   +     R +A+   +++  Y   G   +A  +F+++ S        D  
Sbjct: 429 GLETGKKTHEEILEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKMESR-------DLI 481

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA----NQV 229
              T++GA      L+        I + G   D V   +L+   G C + +SA     ++
Sbjct: 482 SWTTMLGAYTQARLLDEASITFRRIQLEGHTPDRV---ALIAALGACTNLSSARDFHERI 538

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
             +  E D    +AL+  Y+ CG + DA   FD   + S + WN +I+ +        A 
Sbjct: 539 RQLGWEKDPLVANALLEVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHPDRAF 598

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            L   M   G   D+ TLA+V+++ +SL     GK +H    + G+  D +VA+AL++ Y
Sbjct: 599 DLLRAMELQGHNPDSVTLATVINSRASLQLFRKGKIIHDSILEAGMEIDSVVATALVNFY 658

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMI 408
            K                               CG    A+ IF+ +    ++++WNS +
Sbjct: 659 GK-------------------------------CGDFATARSIFQGVGAADNVVTWNSTL 687

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
              +Q+G   EAL +   M +  +     +  SV+S C +    ++G  +F+
Sbjct: 688 AAYAQSGHASEALHVLAEMVQQGVAPTAVTFVSVLSVCGHAGVADVGCHLFS 739


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 220/479 (45%), Gaps = 98/479 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H   +K   +     +  +L+  Y  CG+  +   +FD M ++
Sbjct: 105 VLQLCAGLKSLTDGKKVH-SIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKK 163

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N + WN M+  + K+G  ++S+ LF +M +K             +    ++A  LF+ + 
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKG-----------IEGKRPESASELFDKLC 212

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ I+WNSMI  YV NG     + ++K++   +   +  D   + +V+  CA+   L  
Sbjct: 213 DRDVISWNSMISGYVSNGLTERGLGIYKQM---MYLGIDVDLATIISVLVGCANSGTLSL 269

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK +HS  + +  +                   N +N +L+M               Y+ 
Sbjct: 270 GKAVHSLAIKSSFE----------------RRINFSNTLLDM---------------YSK 298

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG ++ A RVF++  + + V W SMI+GY  +     A++L  +M + GV  D   + S+
Sbjct: 299 CGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSI 358

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+  G L++GK VH +     +  ++ V +AL+D Y+K                   
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK------------------- 399

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +E A  +F TM  K +ISWN+M+                      
Sbjct: 400 ------------CGSMEGANSVFSTMVVKDIISWNTMVG--------------------- 426

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +L+ D  ++A ++ ACA++S+LE G+++   +   G  SD+ ++ +LVD Y KCG + +
Sbjct: 427 ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 485



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 51/342 (14%)

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           + ++ + +     +V+  CA L +L  GK++HS I  N +  D  LG  LV+ Y  CGD 
Sbjct: 91  MCQKSELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDL 150

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMND--------------------ARRVFDR 263
               +V + M++ + +  + ++S YA  G   +                    A  +FD+
Sbjct: 151 KEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDK 210

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             D   + WNSMISGY+SN      L ++ +M   G+  D +T+ SVL  C++ G L  G
Sbjct: 211 LCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG 270

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K VH  A K      +  ++ LLD YSK                               C
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSK-------------------------------C 299

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G ++ A  +F  M  ++++SW SMI G +++G    A+ L   M K  +++D  ++ S++
Sbjct: 300 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSIL 359

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ACA   SL+ G+ V   +    + S+  +  +L+D Y KCG
Sbjct: 360 HACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCG 401



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 193/471 (40%), Gaps = 129/471 (27%)

Query: 30  HFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89
            + K G    ++ +   +++  +    P  A  LFD++  R+  SWN+MI G++  G  E
Sbjct: 174 EYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTE 233

Query: 90  KSLQLFNVM----------------------------------------PQKNDFSWNML 109
           + L ++  M                                         ++ +FS N L
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFS-NTL 292

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +  ++K G+L  A  +F  M  RN ++W SMI  Y R+G++  A+ L +++     E ++
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK---EGVK 349

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D   + +++ ACA   +L+ GK +H +I  N                         N  
Sbjct: 350 LDVVAITSILHACARSGSLDNGKDVHDYIKAN-------------------------NMA 384

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
            N+      F  +AL+  YA CG M  A  VF        + WN+M+             
Sbjct: 385 SNL------FVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV------------- 425

Query: 290 LLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
                    G L+ D+ T+A +L AC+SL  LE GK++HG+  + G   D  VA+AL+D 
Sbjct: 426 ---------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K                               CG +  A+ +F  +P+K L+SW  MI
Sbjct: 477 YVK-------------------------------CGVLGLARLLFDMIPSKDLVSWTVMI 505

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            G   +G   EA+  F  M    +  D+ S  S++ AC++   LE G + F
Sbjct: 506 AGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF 556



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           ++ SC  +  +    RT+ ++ +  +N+ I+   Q G    A++L C   K +L    + 
Sbjct: 45  IFRSCIPVRISATPTRTIDHQ-VTDYNAKILHFCQLGDLENAMELVCMCQKSELETKTY- 102

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             SV+  CA + SL  G++V + +    +  D+ +   LV FY  CG +K
Sbjct: 103 -GSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLK 151


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 237/517 (45%), Gaps = 65/517 (12%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHV-GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           MD R D   R L   N   +  +  + +H H L  G   +T  I NRL+ +Y +  N T 
Sbjct: 1   MDVR-DLAYRYLTQLNHVSTTQIIARAVHAHILTSGFKPNTF-ILNRLINIYCKSSNITY 58

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAG 117
           A  LFD++P+ +  +   ++  +   G+ + + QLFN  P   ++  S+N +I+ ++   
Sbjct: 59  ARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGN 118

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +   A  LF  M R   +                                   D F  ++
Sbjct: 119 DGHAALNLFVQMKRYGFLP----------------------------------DPFTFSS 144

Query: 178 VIGACADLAALE-YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---------FNSAN 227
           V+ A + +A  E + + +H  ++  G      + ++L++ Y  C             SA 
Sbjct: 145 VLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASAR 204

Query: 228 QVL-----NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
           +V      N + EP     + +I+GY     +  AR + D  T    V WN+MISGY+  
Sbjct: 205 KVFDETPKNQIYEPS---WTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSS----LGFLEHGKQVHGHACKVGVIDD 338
               EA   F +M   G+ ED  T  S++SAC S    +G    G+QVHG+  +  V   
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPS 321

Query: 339 ----VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
               + V +AL+  Y+K     +A ++F ++ V D I  N +++ Y +  RIE+A  IF 
Sbjct: 322 HHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFS 381

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP +++++W  MI GL+QNG   E L LF  M    L    ++ A  I+AC+ + SL+ 
Sbjct: 382 EMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDN 441

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           G+Q+ ++V  +G DS      +L+  Y +CG ++  E
Sbjct: 442 GQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAE 478



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 198/408 (48%), Gaps = 46/408 (11%)

Query: 93  QLFNVMPQKNDF--SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           ++F+  P+   +  SW  +I+G+ +  +L  AR L + +     +AWN+MI  YVR G  
Sbjct: 205 KVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLY 264

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACAD----LAALEYGKQIHSHILVNGLD-- 204
            EA   F+ ++S     +Q D +   ++I AC      +     G+Q+H +IL   ++  
Sbjct: 265 EEAFDTFRRMHS---MGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPS 321

Query: 205 --FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
             F   + ++L+  Y K      A +V + M   D    +A++SGY N  ++ +A  +F 
Sbjct: 322 HHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFS 381

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
              + + + W  MISG   N    E L LF++M+  G+       A  ++ACS LG L++
Sbjct: 382 EMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDN 441

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+Q+H    ++G                  G+ +                 N +IT+YS 
Sbjct: 442 GQQIHSQVIRLG---------------HDSGLSAG----------------NALITMYSR 470

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG +E A+ +F TMP    +SWN+MI  L+Q+G  ++A++LF  M K D+  D+ +  ++
Sbjct: 471 CGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTI 530

Query: 443 ISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG-FIK 488
           ++AC +   ++ G   F  + T  G+   +     L+D  C+ G F+K
Sbjct: 531 LTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLK 578



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 22/242 (9%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY  A  + +C+   S+  G+Q+H   ++ G  +S L   N L+ MY RCG    A  +F
Sbjct: 423 DYAFAGAITACSVLGSLDNGQQIHSQVIRLG-HDSGLSAGNALITMYSRCGVVESAESVF 481

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
             MP  +  SWNAMI    + GH  K+++LF  M ++    +  ++  +++    AG +K
Sbjct: 482 LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIK 541

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
             R  F+ M  R  I      +  +I    R G   +A  + K +        +  A I 
Sbjct: 542 EGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMP------FEAGAPIW 595

Query: 176 ATVIGACADLAALEYGKQIHSHI--LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
             ++  C     +E G Q    +  L+ G D   ++   L N+Y   G ++   +V  +M
Sbjct: 596 EALLAGCRIHGNMELGIQAADRLLELIPGQDGTYII---LSNMYAALGQWDEVARVRLLM 652

Query: 234 KE 235
           +E
Sbjct: 653 RE 654


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 195/380 (51%), Gaps = 35/380 (9%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N ++  +   G+++ A+ +F+++P R+ ++WN +I  YV +    +A+ +F+ +  +   
Sbjct: 153 NSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRE--S 210

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            L+ D   + + + AC+ L   E G++IH ++    L+  + +G++L+++Y KCG  + A
Sbjct: 211 NLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAE-LEMTTKIGNALLDMYCKCGCVDKA 269

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             + + M   +  C ++++SGYA+ G +++AR +F+R+     V+W +MI+GY+  N   
Sbjct: 270 RAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFD 329

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL LF KM+   +  D   L ++L  C+  G LE GK +HG+  +  +  D +V +AL+
Sbjct: 330 EALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALV 389

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y+K G    A ++F E+K  DT                                SW S
Sbjct: 390 DVYAKCGCVEKALEVFYEMKERDT-------------------------------ASWTS 418

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-II 465
           +I GL+ NG   +ALD F  M +   R D  +   V++AC +   +E G + F  +T   
Sbjct: 419 VIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTY 478

Query: 466 GLDSDQIISTSLVDFYCKCG 485
            +       + L+D  C+ G
Sbjct: 479 KIQPKSEHYSCLIDLLCRAG 498



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 145/314 (46%), Gaps = 67/314 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   +  VG+++H +   +  L  T  I N LL MY +CG                
Sbjct: 223 LSACSVLRNQEVGEEIHRYVDAE--LEMTTKIGNALLDMYCKCG---------------- 264

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
           C                +K+  +F+ M  KN   W  ++SG+A  G L  AR LF   P 
Sbjct: 265 CV---------------DKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPV 309

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+ + W +MI+ YV+     EA++LF+++    ++RL+ D FIL T++  CA   ALE G
Sbjct: 310 RDIVLWTAMINGYVQFNLFDEALKLFRKMQ---IQRLRPDNFILVTLLKGCAQTGALEQG 366

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K +H +I  N +  D V+G++LV++Y KCG    A +V   MKE                
Sbjct: 367 KWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKE---------------- 410

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                         DT+S  W S+I G   N   ++AL  F +M   G   D  T   VL
Sbjct: 411 -------------RDTAS--WTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVL 455

Query: 312 SACSSLGFLEHGKQ 325
           +AC+  G +E G++
Sbjct: 456 TACNHGGLVEEGRR 469



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 180/383 (46%), Gaps = 40/383 (10%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G ++ A  +   +     + +N MI    ++   R+ + LF EL     + L  D F L 
Sbjct: 64  GSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRK---QGLNPDNFTLP 120

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            V  A   L  +  G+++H +++ +G  FD+ + +S++ +YG  G    A +V + + E 
Sbjct: 121 PVFKAMGCLGKVVEGEKVHGYVVKSG--FDACVCNSVMGMYGALGKMEVAKKVFDEIPER 178

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D    + LIS Y    K  D                               A+ +F +MR
Sbjct: 179 DVVSWNVLISSYVGHRKFED-------------------------------AIAVFRRMR 207

Query: 297 RNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R   L+ D +T+ S LSACS L   E G+++H +     +     + +ALLD Y K G  
Sbjct: 208 RESNLKADEATVVSTLSACSVLRNQEVGEEIHRYV-DAELEMTTKIGNALLDMYCKCGCV 266

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
             A  +F E+   + I   +M++ Y+S G +++A+ +F   P + ++ W +MI G  Q  
Sbjct: 267 DKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFN 326

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EAL LF  M    LR D F L +++  CA   +LE G+ +   +    +  D+++ T
Sbjct: 327 LFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGT 386

Query: 476 SLVDFYCKCGFIK--MDEYYLMQ 496
           +LVD Y KCG ++  ++ +Y M+
Sbjct: 387 ALVDVYAKCGCVEKALEVFYEMK 409


>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
 gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
          Length = 625

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 192/389 (49%), Gaps = 69/389 (17%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+S + ++G+L++AR +F+ +  ++ I+WNSM+  Y ++G   E + LF++++     
Sbjct: 46  NSLVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKMD----- 100

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++ D+   A+++GAC+ +  LE GK++H+ +  +    D  L ++L+N+Y K       
Sbjct: 101 -VEPDSITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSK------- 152

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                   CG +  ARRVFD         WN+MISG + +    
Sbjct: 153 ------------------------CGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAR 188

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL LF +M+   V  D  +  ++LSAC +L  L  G ++H HA   G+  D++V +A+ 
Sbjct: 189 EALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVETAVF 248

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWN 405
           + YSK                               C +++ A+ +F  M  K+ ++SWN
Sbjct: 249 NMYSK-------------------------------CRQVDLARKMFDGMNEKTNVVSWN 277

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           SMI   +Q+G   EAL+L+  M +  ++ D  + A  + AC +      G ++ +R+T  
Sbjct: 278 SMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITES 337

Query: 466 GLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            + +D  + T++V+ Y KCG ++    Y 
Sbjct: 338 KIRTDVFLDTAIVNMYAKCGELETAMSYF 366



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 214/486 (44%), Gaps = 101/486 (20%)

Query: 37  LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
            +S + + N L+  Y R G+   A  +FD +  ++  SWN+M+  + + GH E+ L+LF 
Sbjct: 38  FHSNVVVKNSLVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFR 97

Query: 97  VMPQKND-------------------------------FSWN-----MLISGFAKAGELK 120
            M  + D                               F  +      LI+ ++K G L+
Sbjct: 98  KMDVEPDSITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLE 157

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           +AR +F+ +   +   WN+MI   V++G AREA+ LF+ + +   E ++ D     T++ 
Sbjct: 158 SARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFERMKA---ESVRIDKVSYLTILS 214

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           AC  L  L  G +IH H    G+D D V+ +++ N+Y KC   + A ++ + M E     
Sbjct: 215 ACCALEDLHEGIRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEK---- 270

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
                                     T+ V WNSMI+ Y  +    EAL L+  M+  GV
Sbjct: 271 --------------------------TNVVSWNSMIAAYAQSGRGREALELYELMKEEGV 304

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T A  L AC+S G    G ++H    +  +  DV + +A+++ Y+K         
Sbjct: 305 QPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAK--------- 355

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 CG +E A   F  M  K+ ++W++M+    Q G   EA
Sbjct: 356 ----------------------CGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREA 393

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVD 479
           LDL+  M     +  + +LA  ++AC+ I +L+ G+ + +R+     L +   +  SL++
Sbjct: 394 LDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLN 453

Query: 480 FYCKCG 485
            Y KCG
Sbjct: 454 MYAKCG 459



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 181/421 (42%), Gaps = 87/421 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ YL  +L +C     +H G ++H H    G ++  L +   +  MY +C     A  +
Sbjct: 206 KVSYLT-ILSACCALEDLHEGIRIHEHASACG-MDKDLVVETAVFNMYSKCRQVDLARKM 263

Query: 64  FDEM-PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW------------ 106
           FD M  + N  SWN+MI  + + G   ++L+L+ +M     Q +D ++            
Sbjct: 264 FDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGG 323

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                    +++ +AK GEL+TA + F  M R+NA+ W++M+  
Sbjct: 324 SAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGA 383

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           +++ G+ REA+ L+  + S   E  Q     LA  + AC+ + AL+ GK IHS I     
Sbjct: 384 FIQQGYDREALDLYLRMVS---EGFQPSEITLAGALAACSRIGALQEGKAIHSRI----- 435

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
                                +   + N +     F  ++L++ YA CG +  A  +F  
Sbjct: 436 --------------------QATETLQNCL-----FLQNSLLNMYAKCGCLAIANTMFSN 470

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                S  WN++I G+  + +  E L L  +M ++GV  D  T A VL ACS  G L+ G
Sbjct: 471 LQRRDSFSWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRG 530

Query: 324 K----QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL-----FSELKVYDTILLN 374
           +     + G  C   ++D       L+D  S+ G   +A  L     F+   V  T LL 
Sbjct: 531 RSHFLSMTGDYCIKPMLDHY---ECLVDVLSRAGWAREAEALAMAMPFTPRPVTWTTLLG 587

Query: 375 T 375
            
Sbjct: 588 A 588



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 137/321 (42%), Gaps = 68/321 (21%)

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L+E  + +    + V  +C+    L+    I + I  +    + V+ +SLV+ Y + GD 
Sbjct: 2   LLEGFRPNGVTFSGVASSCSGREELD---TIQASIAASDFHSNVVVKNSLVSAYTRSGDL 58

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            SA                               R+VFD   +   + WNSM+  Y  + 
Sbjct: 59  RSA-------------------------------RKVFDSIENKDLISWNSMVVAYSQHG 87

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              E L LF KM    V  D+ T AS+L ACS++  LE GK+VH    +     D  +A+
Sbjct: 88  HGEEMLELFRKM---DVEPDSITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAA 144

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL++ YSK G+   A ++F  ++  D    N MI+                         
Sbjct: 145 ALINMYSKCGVLESARRVFDGIQSVDPSPWNAMIS------------------------- 179

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
                 GL Q+G   EAL LF  M    +R+DK S  +++SAC  +  L  G ++    +
Sbjct: 180 ------GLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHAS 233

Query: 464 IIGLDSDQIISTSLVDFYCKC 484
             G+D D ++ T++ + Y KC
Sbjct: 234 ACGMDKDLVVETAVFNMYSKC 254



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 77/120 (64%), Gaps = 3/120 (2%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           + ++ N++++ Y+  G +  A+ +F ++ NK LISWNSM+V  SQ+G   E L+LF    
Sbjct: 41  NVVVKNSLVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELF---R 97

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           K+D+  D  + AS++ AC+ +  LELG++V ARV+     SD  ++ +L++ Y KCG ++
Sbjct: 98  KMDVEPDSITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLE 157


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 177/355 (49%), Gaps = 34/355 (9%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  ++  G +  A  LF  +       WN +I     NG + +A+ L+K +   + + +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNM---VCQGI 121

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D F    VI AC +  +++ GK +H  ++  G   D  + ++L++ Y KCG    A +
Sbjct: 122 AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALK 181

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V   M+  +    + +ISG  +CG + +ARR+FD     + V W +MI+GYI N +  EA
Sbjct: 182 VFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEA 241

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L LF +M+   +  +  T+ S++ AC+ +G L  G+ +H +A K  +   V + +AL+D 
Sbjct: 242 LELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDM 301

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           YSK G   DA +                               +F TMP KSL +WNSMI
Sbjct: 302 YSKCGSIKDAIE-------------------------------VFETMPRKSLPTWNSMI 330

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
             L  +G   EAL+LF  M +++++ D  +   V+ AC +I +++ G   F R+T
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 176/362 (48%), Gaps = 68/362 (18%)

Query: 104  FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            F  + LI  ++K G+LK AR LF+++P RN ++W SMI  YV+N  A  A+ LFK+   +
Sbjct: 2051 FVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEE 2110

Query: 164  LVE-----RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
              E      +  D+ ++ +V+ AC+ ++     + +H  ++  G D    +G++L++ Y 
Sbjct: 2111 ETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYA 2170

Query: 219  KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
            KCG    + +V + M+E DD   +++I+ YA  G                       +SG
Sbjct: 2171 KCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG-----------------------LSG 2207

Query: 279  YISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
                    EAL +FH M R+ GV  +A TL++VL AC+  G L  GK +H    K+ +  
Sbjct: 2208 --------EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEY 2259

Query: 338  DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            +V V ++++D Y K                               CGR+E AK  F  M 
Sbjct: 2260 NVCVGTSIIDMYCK-------------------------------CGRVEMAKKTFDRMK 2288

Query: 398  NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
             K++ SW +M+ G   +G   EALD+F  M +  ++ +  +  SV++AC++   +E G  
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 2348

Query: 458  VF 459
             F
Sbjct: 2349 WF 2350



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 155/333 (46%), Gaps = 34/333 (10%)

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           +F   N  L  R    A     ++  C +   L   +QIH+ I+ +GL  D +L   L++
Sbjct: 11  VFPSKNIPLTPRGNIRAKKALFLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIH 67

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           LY   G    A  +   ++ P  F                                WN +
Sbjct: 68  LYSTHGRIAYAILLFYQIQNPCTFT-------------------------------WNLI 96

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I     N    +AL+L+  M   G+  D  T   V+ AC++   ++ GK VHG   K G 
Sbjct: 97  IRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGF 156

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             DV V + L+D Y K G    A K+F +++V + +   T+I+   SCG +++A+ IF  
Sbjct: 157 SGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDE 216

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           +P+K+++SW +MI G  +N  P EAL+LF  M   ++  +++++ S+I AC  +  L LG
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             +        ++    + T+L+D Y KCG IK
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 81/359 (22%)

Query: 12   LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
            ++SC+    +  G+  H      G   + L +++ L+ MY +CG   DA  LFDE+P RN
Sbjct: 2022 IKSCSALCDLVSGRMSHQQAFVFG-FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 2080

Query: 72   CFSWNAMIEGFMKLGHKEKSLQLF-------------NVMP------------------- 99
              SW +MI G+++    + +L LF             N +P                   
Sbjct: 2081 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 2140

Query: 100  ----------QKNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                       K  F       N L+  +AK G+   ++ +F+ M  ++ I+WNSMI  Y
Sbjct: 2141 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVY 2200

Query: 145  VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
             ++G + EA+ +F  +   +  R   +A  L+ V+ ACA   AL  GK IH  ++   L+
Sbjct: 2201 AQSGLSGEALEVFHGMVRHVGVRY--NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLE 2258

Query: 205  FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            ++  +G+S++++Y K                               CG++  A++ FDR 
Sbjct: 2259 YNVCVGTSIIDMYCK-------------------------------CGRVEMAKKTFDRM 2287

Query: 265  TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + +   W +M++GY  +    EAL +F+KM R GV  +  T  SVL+ACS  G +E G
Sbjct: 2288 KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 2346



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 172/397 (43%), Gaps = 78/397 (19%)

Query: 105  SWNMLISGFAKAGELKT--ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            ++N ++ G     E  +  A   +  + + N  +WNS+I    R G + EA+R F  L  
Sbjct: 1949 TYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRK 2008

Query: 163  -DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
              L+             I +C+ L  L  G+  H    V G                   
Sbjct: 2009 LGLIPTRSS----FPCTIKSCSALCDLVSGRMSHQQAFVFGF------------------ 2046

Query: 222  DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                         E D F  SALI  Y+ CG++ DAR +FD     + V W SMI+GY+ 
Sbjct: 2047 -------------ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 2093

Query: 282  NNEDTEALLLFHKMRR--------NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
            N +   ALLLF             N V  D+  + SVLSACS +      + VHG   K 
Sbjct: 2094 NEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKK 2153

Query: 334  GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            G    + V + L+D Y+K G P  + K+F  ++  D I  N+MI VY             
Sbjct: 2154 GFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVY------------- 2200

Query: 394  RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSL 452
                              +Q+G   EAL++F  M + + +R +  +L++V+ ACA+  +L
Sbjct: 2201 ------------------AQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 2242

Query: 453  ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
              G+ +  +V  + L+ +  + TS++D YCKCG ++M
Sbjct: 2243 RAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEM 2279



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 34/253 (13%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  N +I+ + K GH   +L++F  M  +N  SW  +ISG    G+L+ AR +F+++P
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +N ++W +MI+ Y+RN    EA+ LFK + +   E +  + + + ++I AC ++  L  
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQA---ENIFPNEYTMVSLIKACTEMGILTL 275

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ IH + + N ++    LG++L+++Y KCG                             
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS---------------------------- 307

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
              + DA  VF+     S   WNSMI+    +    EAL LF +M R  V  DA T   V
Sbjct: 308 ---IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGV 364

Query: 311 LSACSSLGFLEHG 323
           L AC  +  ++ G
Sbjct: 365 LCACVHIKNVKEG 377



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 78/253 (30%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP------------- 57
           ++++C    SI +GK +H   +K G       + N L+  Y +CG+              
Sbjct: 131 VIKACTNFLSIDLGKVVHGSLIKYGFSGDVF-VQNNLIDFYFKCGHTRFALKVFEKMRVR 189

Query: 58  ------------------TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99
                              +A  +FDE+P +N  SW AMI G+++    E++L+LF  M 
Sbjct: 190 NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQ 249

Query: 100 QKNDF--SWNM-------------------------------------LISGFAKAGELK 120
            +N F   + M                                     LI  ++K G +K
Sbjct: 250 AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER--LQCDAFILATV 178
            A  +F  MPR++   WNSMI     +G  +EA+ LF E+     ER  ++ DA     V
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM-----ERVNVKPDAITFIGV 364

Query: 179 IGACADLAALEYG 191
           + AC  +  ++ G
Sbjct: 365 LCACVHIKNVKEG 377



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 134/309 (43%), Gaps = 58/309 (18%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +  +L +C+      + + +H   +KKG  + ++ + N L+  Y +CG P  +  +FD M
Sbjct: 2127 MVSVLSACSRVSGKGITEGVHGFVVKKG-FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 2185

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
              ++  SWN+MI  + + G   ++L++F+ M +                           
Sbjct: 2186 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 2245

Query: 101  --------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                    K D  +N+     +I  + K G ++ A+  F+ M  +N  +W +M+  Y  +
Sbjct: 2246 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 2305

Query: 148  GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-----KQIHSHILVNG 202
            G A+EA+ +F ++   +   ++ +     +V+ AC+    +E G        H + +  G
Sbjct: 2306 GRAKEALDIFYKM---VRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPG 2362

Query: 203  LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND-----A 257
            ++        +V+L+G+ G  N A  ++  MK   DF +   + G     K  D     A
Sbjct: 2363 IEHYGC----MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAA 2418

Query: 258  RRVFDRTTD 266
            +++F+   D
Sbjct: 2419 QKLFELDPD 2427



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  L+++C     + +G+ +H + +K  I    + +   L+ MY +CG+  DA+ +F+ M
Sbjct: 260 MVSLIKACTEMGILTLGRGIHDYAIKNCI-EIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTAR 123
           PR++  +WN+MI      G  +++L LF+ M + N      ++  ++        +K   
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC 378

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNS 162
             F  M +   IA     +  M   Y R+    EA +  KE+ S
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGS 422


>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 245/483 (50%), Gaps = 41/483 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L ++L++C     I  G+ +H   ++ G+  S+L + N +L +Y +CG  + A  +F  M
Sbjct: 187 LPKVLKACGKFRDIETGRLIHSLVIRGGMC-SSLHVNNSILAVYAKCGEMSCAEKIFRRM 245

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKTAR 123
             RNC SWN +I G+ + G  E++ + F+ M ++       +WN+LI+ +++ G    A 
Sbjct: 246 DERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTWNILIASYSQLGHCDIAM 305

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            L   M       +   W SMI  + + G   EA  L +++   L+  ++ ++  +A+  
Sbjct: 306 DLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDM---LIVGVEPNSITIASAA 362

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA + +L  G +IHS  +   +  D ++G+SL+++Y K GD  +A  + ++M E D +
Sbjct: 363 SACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDVY 422

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKM 295
             +++I GY   G    A  +F +  ++ S    V WN MI+G++ N ++ EAL LF ++
Sbjct: 423 SWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRI 482

Query: 296 RRNGVLE-DASTLASVLSACSSLGFLEHG---------KQVHGHACKVGVIDDVIVASAL 345
            ++G ++ + ++  S++S     GFL++          +Q+        ++  + +  A 
Sbjct: 483 EKDGKIKPNVASWNSLIS-----GFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPAC 537

Query: 346 LDTYSKRGMPSDAC-----KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
            +  + + +    C      L SEL V      NT I  Y+  G I  ++ +F  +  K 
Sbjct: 538 TNLVAAKKVKEIHCCATRRNLVSELSVS-----NTFIDSYAKSGNIMYSRKVFDGLSPKD 592

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           +ISWNS++ G   +G    ALDLF  M K  L   + +L S+ISA ++   ++ G+  F+
Sbjct: 593 IISWNSLLSGYVLHGCSESALDLFDQMRKDGLHPSRVTLTSIISAYSHAEMVDEGKHAFS 652

Query: 461 RVT 463
            ++
Sbjct: 653 NIS 655



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 203/467 (43%), Gaps = 86/467 (18%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N F    L+S +AK G L  AR +F++M  RN   W++MI    R+    E V LF ++ 
Sbjct: 117 NPFVETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDM- 175

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
             +   +  D F+L  V+ AC     +E G+ IHS ++  G+     + +S++ +Y KCG
Sbjct: 176 --MQHGVLPDDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCG 233

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD------------------- 262
           + + A ++   M E +    + +I+GY   G++  A++ FD                   
Sbjct: 234 EMSCAEKIFRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTWNILIA 293

Query: 263 ---------------RTTDTSSVM-----WNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                          R  ++  +      W SMISG+       EA  L   M   GV  
Sbjct: 294 SYSQLGHCDIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEP 353

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           ++ T+AS  SAC+S+  L  G ++H  A K  ++DD+++ ++L+D Y+K G    A  +F
Sbjct: 354 NSITIASAASACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIF 413

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGS 416
             +   D    N++I  Y   G    A  +F  M      PN  +++WN MI G  QNG 
Sbjct: 414 DVMLERDVYSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPN--VVTWNVMITGFMQNGD 471

Query: 417 PIEALDLFCNMNKLD----------------------------LRMDKFS--------LA 440
             EAL+LF  + K                               R  +FS        + 
Sbjct: 472 EDEALNLFLRIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVL 531

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +++ AC N+ + +  +++    T   L S+  +S + +D Y K G I
Sbjct: 532 TILPACTNLVAAKKVKEIHCCATRRNLVSELSVSNTFIDSYAKSGNI 578



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 139/295 (47%), Gaps = 39/295 (13%)

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
           + ++++ + F  + L+S YA CG +++AR+VFD   + +   W++MI     + +  E +
Sbjct: 110 IGLVRKVNPFVETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVV 169

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF+ M ++GVL D   L  VL AC     +E G+ +H    + G+   + V +++L  Y
Sbjct: 170 ELFYDMMQHGVLPDDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVY 229

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLISWN 405
           +K G  S A K+F  +   + +  N +IT Y   G IE A+  F  M  +     L++WN
Sbjct: 230 AKCGEMSCAEKIFRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTWN 289

Query: 406 -----------------------------------SMIVGLSQNGSPIEALDLFCNMNKL 430
                                              SMI G +Q G   EA DL  +M  +
Sbjct: 290 ILIASYSQLGHCDIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIV 349

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +  +  ++AS  SACA++ SL +G ++ +      +  D +I  SL+D Y K G
Sbjct: 350 GVEPNSITIASAASACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGG 404



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           ++++Y+ CG +++A+ +F  M  ++L +W++MI   S++    E ++LF +M +  +  D
Sbjct: 124 LVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVLPD 183

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------FI 487
            F L  V+ AC     +E G  + + V   G+ S   ++ S++  Y KCG        F 
Sbjct: 184 DFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKIFR 243

Query: 488 KMDE 491
           +MDE
Sbjct: 244 RMDE 247


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 135/512 (26%), Positives = 227/512 (44%), Gaps = 107/512 (20%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +GKQ+H   ++ G L+  + + N L+ MY++ G+ + A  +F +M   +  SWN MI 
Sbjct: 922  LELGKQIHGIVVRSG-LDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMIS 980

Query: 81   GFMKLGHKEKSLQLF------NVMPQK--------------------------------- 101
            G    G +E S+ +F       ++P +                                 
Sbjct: 981  GCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVV 1040

Query: 102  -NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
             + F    LI  ++K+G+++ A  LF +    +  +WN+M+H Y+ +G   +A+RL+  L
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYI-L 1099

Query: 161  NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
              +  ER   +   LA    A   L  L+ GKQI + ++  G + D              
Sbjct: 1100 MQESGER--ANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDL------------- 1144

Query: 221  GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                              F +S ++  Y  CG+M  ARR+F+       V W +MISG +
Sbjct: 1145 ------------------FVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCV 1186

Query: 281  SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
             N ++  AL  +H MR + V  D  T A+++ ACS L  LE G+Q+H +  K+    D  
Sbjct: 1187 ENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPF 1246

Query: 341  VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
            V ++L+D Y+K                               CG IEDA+ +F+      
Sbjct: 1247 VMTSLVDMYAK-------------------------------CGNIEDARGLFKRTNTSR 1275

Query: 401  LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL-ELGEQVF 459
            + SWN+MIVGL+Q+G+  EAL  F  M    +  D+ +   V+SAC++   + E  E  +
Sbjct: 1276 IASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFY 1335

Query: 460  ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            +   I G++ +    + LVD   + G I+  E
Sbjct: 1336 SMQKIYGIEPEIEHYSCLVDALSRAGRIREAE 1367



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 223/503 (44%), Gaps = 99/503 (19%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA + + C    S    + LH + +K G L   + +A  L+ +Y + G   +A +LFD M
Sbjct: 730  LAPVFKMCLLSASPSAAESLHGYAVKIG-LQWDVFVAGALVNIYAKFGRIREARVLFDGM 788

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFN--------------------VMPQKNDFSWN 107
              R+   WN M++ ++  G + ++L LF+                    V  ++N   W 
Sbjct: 789  GLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQ 848

Query: 108  MLISGFAKAGELKTART-LF---NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            +         +LK   T LF   +D    + IAWN  +  +++ G   EAV  F ++   
Sbjct: 849  L--------KQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDM--- 897

Query: 164  LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            +  R+ CD      ++   A L  LE GKQIH  ++ +GLD    +G+ L+N+Y K G  
Sbjct: 898  INSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSV 957

Query: 224  NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            + A  V   M E D      L+S                         WN+MISG   + 
Sbjct: 958  SRARTVFWQMNEVD------LVS-------------------------WNTMISGCALSG 986

Query: 284  EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH-GKQVHGHACKVGVIDDVIVA 342
             +  ++ +F  + R G+L D  T+ASVL ACSSLG   H   Q+H  A K GV+ D  V+
Sbjct: 987  LEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVS 1046

Query: 343  SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
            + L+D YSK                                G++E+A+ +F       L 
Sbjct: 1047 TTLIDVYSK-------------------------------SGKMEEAEFLFVNQDGFDLA 1075

Query: 403  SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
            SWN+M+ G   +G   +AL L+  M +   R ++ +LA+   A   +  L+ G+Q+ A V
Sbjct: 1076 SWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVV 1135

Query: 463  TIIGLDSDQIISTSLVDFYCKCG 485
               G + D  + + ++D Y KCG
Sbjct: 1136 VKRGFNLDLFVISGVLDMYLKCG 1158



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 187/438 (42%), Gaps = 88/438 (20%)

Query: 104  FSWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
            F  N LI+ ++K G L +AR LF+  P   R+ + WN+++  +     AR+   LF+ L 
Sbjct: 662  FLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADK--ARDGFHLFRLLR 719

Query: 162  SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
               V   +     LA V   C   A+    + +H + +  GL +D  +  +LVN+Y    
Sbjct: 720  RSFVSATR---HTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIY---- 772

Query: 222  DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                       A  G++ +AR +FD       V+WN M+  Y+ 
Sbjct: 773  ---------------------------AKFGRIREARVLFDGMGLRDVVLWNVMMKAYVD 805

Query: 282  NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-LGFLE-HGKQVHGHACKVGVI--- 336
               + EALLLF +  R G+  D  TL ++     S    LE   KQ+  +  K+ +    
Sbjct: 806  TGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDD 865

Query: 337  ---DDVIVASALLDTYSKRGMPSDACKLFSEL---------------------------- 365
                DVI  +  L  + +RG   +A   F ++                            
Sbjct: 866  DDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELG 925

Query: 366  -KVYDTILL----------NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             +++  ++           N +I +Y   G +  A+ +F  M    L+SWN+MI G + +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 415  GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQII 473
            G    ++ +F ++ +  L  D+F++ASV+ AC+++     L  Q+ A     G+  D  +
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 474  STSLVDFYCKCGFIKMDE 491
            ST+L+D Y K G  KM+E
Sbjct: 1046 STTLIDVYSKSG--KMEE 1061



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 134/309 (43%), Gaps = 51/309 (16%)

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNED 285
           ++L     PD F  + LI+ Y+ CG ++ AR++FD T DTS   V WN+++S +     D
Sbjct: 651 RILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKARD 710

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
                LF  +RR+ V     TLA V   C         + +HG+A K+G+  DV VA AL
Sbjct: 711 --GFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGAL 768

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF------------ 393
           ++ Y+K G   +A  LF  + + D +L N M+  Y   G   +A  +F            
Sbjct: 769 VNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDD 828

Query: 394 -------RTMPNKS----------------------------LISWNSMIVGLSQNGSPI 418
                  R + +K                             +I+WN  +    Q G   
Sbjct: 829 VTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETW 888

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           EA+D F +M    +  D  +   ++S  A ++ LELG+Q+   V   GLD    +   L+
Sbjct: 889 EAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLI 948

Query: 479 DFYCKCGFI 487
           + Y K G +
Sbjct: 949 NMYVKTGSV 957



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 21/241 (8%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFD 65
             A L+++C+   ++  G+Q+H + +K   LN      +   L+ MY +CGN  DA  LF 
Sbjct: 1213 FATLVKACSLLTALEQGRQIHANTVK---LNCAFDPFVMTSLVDMYAKCGNIEDARGLFK 1269

Query: 66   EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKT 121
                    SWNAMI G  + G+ E++LQ F  M  +    +  ++  ++S  + +G +  
Sbjct: 1270 RTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSE 1329

Query: 122  ARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            A   F  M +   I      ++ ++    R G  REA ++   +        +  A +  
Sbjct: 1330 AYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMP------FEASASMYR 1383

Query: 177  TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            T++ AC      E GK++   +L      DS     L N+Y     + +     NMM++ 
Sbjct: 1384 TLLNACRVQVDRETGKRVAEKLLALEPS-DSAAYVLLSNVYAAANQWENVASARNMMRKA 1442

Query: 237  D 237
            +
Sbjct: 1443 N 1443



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNGSPIEALDLFCN 426
           D  L N +IT+YS CG +  A+ +F T P+ S  L++WN+++   +      +   LF  
Sbjct: 660 DRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKAR--DGFHLFRL 717

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           + +  +   + +LA V   C   +S    E +      IGL  D  ++ +LV+ Y K G 
Sbjct: 718 LRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGR 777

Query: 487 IK 488
           I+
Sbjct: 778 IR 779


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 214/491 (43%), Gaps = 106/491 (21%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S + +   LL MY + G  +DA  +FD MP+RN FSW+ M+ G+      E++  LF +M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 99  -----PQKNDFSW-----------------------------------NMLISGFAKAGE 118
                 +K++F                                     N L++ +AKAG 
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +  A  +F     RN+I W++MI  Y +NG A  AV +F ++++      +   F    V
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTE---FTFVGV 327

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + A +DL AL  GKQ H  ++  G +         V +Y K                   
Sbjct: 328 LNASSDLGALAVGKQAHGLMVKLGFE---------VQIYVK------------------- 359

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              SAL+  YA CG + DA+  FD+  +   V+W +M+SG++ N E  EAL L+ +M + 
Sbjct: 360 ---SALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKE 416

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G++   ST+AS L AC+ +  LE GKQ+H    K G+     V SAL   YSK G   D 
Sbjct: 417 GIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDG 476

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
             +F  +   D I                               +WNS+I G SQNG   
Sbjct: 477 MSVFRRIPDRDVI-------------------------------AWNSIISGFSQNGCGN 505

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSL 477
            ALDLF  M       D  +  +++ AC+++  ++ G + F+ +T   GL         +
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565

Query: 478 VDFYCKCGFIK 488
           VD   + G +K
Sbjct: 566 VDILSRAGMLK 576



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 21/238 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C    ++  GKQLH   +K G L    P+ + L  MY +CGN  D + +F  +
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIVKYG-LGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM----LISGFAKAGELKTAR 123
           P R+  +WN++I GF + G    +L LF  M  +     N+    ++   +  G +    
Sbjct: 484 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 543

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILA 176
             F+ M +   +      +  M+    R G  +EA         D +E +  D    +  
Sbjct: 544 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEA--------KDFIESITIDHGTCLWR 595

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
            V+GAC  L   + G      ++  G   DS     L N+Y     +N   +V ++M+
Sbjct: 596 IVLGACRSLRDFDVGAYAGERLMELGTR-DSSAYILLSNIYASQRKWNDVERVRHLMR 652



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           ACK+ S   V +  +  +++ +Y   G + DA+ +F  MP ++  SW++M+ G +     
Sbjct: 143 ACKIPS--AVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCS 200

Query: 418 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
            EA DLF  M  +      +F   +V+SA +    L +GEQ+   +   GL     +  S
Sbjct: 201 EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENS 260

Query: 477 LVDFYCKCG 485
           LV  Y K G
Sbjct: 261 LVTMYAKAG 269


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 229/520 (44%), Gaps = 105/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEM 67
           AR LQ C        G+ +H H +++G +    L  AN LL MY + G    A  LFD M
Sbjct: 63  ARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDF------------------- 104
           P RN  S+  +++   + G  E +  LF  +     + N F                   
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 105 -----SWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                +W +           LI  ++    +  A  +FN + R++A+ W +M+ CY  N 
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A R+F ++    V   + + F L +V+ A   L ++  GK IH   +    D +  
Sbjct: 243 CPENAFRVFSKMR---VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPH 299

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G +L+++Y K                               CG + DAR  F+      
Sbjct: 300 VGGALLDMYAK-------------------------------CGDIKDARLAFEMIPYDD 328

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            ++ + MIS Y  +N++ +A  LF ++ R+ VL +  +L+SVL AC+++  L+ GKQ+H 
Sbjct: 329 VILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHN 388

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           HA K+G   D+ V +AL+D Y+K      + K+FS L+  + +  NT++           
Sbjct: 389 HAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV----------- 437

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                               VG SQ+G   EAL +FC M    +   + + +SV+ ACA+
Sbjct: 438 --------------------VGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +S+    Q+   +     ++D +I  SL+D Y KCG+I+
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 517



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 168/389 (43%), Gaps = 69/389 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +LQ+C     +  GKQ+H H +K G   S L + N L+  Y +C +   +L +F  +
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIG-HESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMP----------------------- 99
              N  SWN ++ GF + G  E++L +F       MP                       
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAG 485

Query: 100 ------QKNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                 +K+ F+      N LI  +AK G ++ A  +F  +  R+ I+WN++I  Y  +G
Sbjct: 486 QIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHG 545

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDS 207
            A +A+ LF  +N   VE    +      ++  C+    + +G  +   + ++ G+    
Sbjct: 546 QAADALELFDRMNKSNVE---SNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSM 602

Query: 208 VLGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG---YANC--GKMNDARRV- 260
              + +V L G+ G  N A Q + ++   P      AL+S    + N   G+ +  + + 
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 662

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
            +   +T+ V+ ++M   Y +     +  LL   MR  GV +              L ++
Sbjct: 663 IEPQDETTYVLLSNM---YAAAGSLDQVALLRKSMRNIGVRK-----------VPGLSWV 708

Query: 321 EHGKQVHGHACKVGVID--DVIVASALLD 347
           E   ++  HA  VG +D  D+ V +A+L+
Sbjct: 709 EIKGEI--HAFSVGSVDHPDMRVINAMLE 735



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 147/386 (38%), Gaps = 103/386 (26%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNG--LDFDSVLGSSLVNLYGKCGDFNSANQ 228
           D+F  A  +  C        G+ +H H++  G     D    + L+N+YGK G   SA  
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASA-- 115

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                        RR+FDR  + + V + +++  +    +   A
Sbjct: 116 -----------------------------RRLFDRMPERNMVSFVTLVQAHAQRGDFEAA 146

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             LF ++R  G   +   L ++L    ++        VH  A K+G   +  V S L+D 
Sbjct: 147 AALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDA 206

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PN---- 398
           YS   + SDA  +F+ +   D ++   M++ YS     E+A  +F  M      PN    
Sbjct: 207 YSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFAL 266

Query: 399 ----KSLISWNSMIVGLSQNGSPIEA------------LDLFC----------------- 425
               K+ +   S+++G   +G  I+             LD++                  
Sbjct: 267 TSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326

Query: 426 ----------------NMN----KLDLRMDKFSL-------ASVISACANISSLELGEQV 458
                           N N    +L LR+ + S+       +SV+ AC N+  L+ G+Q+
Sbjct: 327 DDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQI 386

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKC 484
                 IG +SD  +  +L+DFY KC
Sbjct: 387 HNHAIKIGHESDLFVGNALMDFYAKC 412



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 9/150 (6%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T++ Y + +L++C +  SI    Q+H   ++K   N+   I N L+  Y +CG   DAL 
Sbjct: 464 TQVTY-SSVLRACASTASIRHAGQIHCS-IEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 521

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGE 118
           +F  +  R+  SWNA+I G+   G    +L+LF+ M     + ND ++  L+S  +  G 
Sbjct: 522 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGL 581

Query: 119 LKTARTLFNDMPRRNAIAWNSMIH--CYVR 146
           +    +LF+ M   + I   SM H  C VR
Sbjct: 582 VNHGLSLFDSMRIDHGIK-PSMEHYTCIVR 610



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 33/192 (17%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLDTYSKRGMPSDACK 360
           D+   A  L  C + G    G+ VHGH  + G +   D+  A+ LL+ Y K G  + A +
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF  +   + +   T++  ++  G  E A  +FR +       W          G  +  
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL------RW---------EGHEVNQ 162

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
             +   M KL + MD   LA  + +CA                 +G D +  + + L+D 
Sbjct: 163 F-VLTTMLKLAIAMDAAGLAGGVHSCA---------------WKLGHDHNAFVGSGLIDA 206

Query: 481 YCKCGFIKMDEY 492
           Y  C  +   E+
Sbjct: 207 YSLCSLVSDAEH 218


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 214/491 (43%), Gaps = 106/491 (21%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           S + +   LL MY + G  +DA  +FD MP+RN FSW+ M+ G+      E++  LF +M
Sbjct: 151 SNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210

Query: 99  -----PQKNDFSW-----------------------------------NMLISGFAKAGE 118
                 +K++F                                     N L++ +AKAG 
Sbjct: 211 LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGC 270

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           +  A  +F     RN+I W++MI  Y +NG A  AV +F ++++      +   F    V
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTE---FTFVGV 327

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + A +DL AL  GKQ H  ++  G +         V +Y K                   
Sbjct: 328 LNASSDLGALAVGKQAHGLMVKLGFE---------VQIYVK------------------- 359

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              SAL+  YA CG + DA+  FD+  +   V+W +M+SG++ N E  EAL L+ +M + 
Sbjct: 360 ---SALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKE 416

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G++   ST+AS L AC+ +  LE GKQ+H    K G+     V SAL   YSK G   D 
Sbjct: 417 GIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDG 476

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
             +F  +   D I                               +WNS+I G SQNG   
Sbjct: 477 MSVFRRIPDRDVI-------------------------------AWNSIISGFSQNGCGN 505

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSL 477
            ALDLF  M       D  +  +++ AC+++  ++ G + F+ +T   GL         +
Sbjct: 506 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 565

Query: 478 VDFYCKCGFIK 488
           VD   + G +K
Sbjct: 566 VDILSRAGMLK 576



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 21/238 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C    ++  GKQLH   +K G L    P+ + L  MY +CGN  D + +F  +
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIVKYG-LGLGAPVGSALSTMYSKCGNLEDGMSVFRRI 483

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM----LISGFAKAGELKTAR 123
           P R+  +WN++I GF + G    +L LF  M  +     N+    ++   +  G +    
Sbjct: 484 PDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGW 543

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILA 176
             F+ M +   +      +  M+    R G  +EA         D +E +  D    +  
Sbjct: 544 EYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEA--------KDFIESITIDHGTCLWR 595

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
            V+GAC  L   + G      ++  G   DS     L N+Y     +N   +V ++M+
Sbjct: 596 IVLGACRSLRDFDVGAYAGERLMELGTG-DSSAYILLSNIYASQRKWNDVERVRHLMR 652



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           ACK+ S   V +  +  +++ +Y   G + DA+ +F  MP ++  SW++M+ G +     
Sbjct: 143 ACKIPS--AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCS 200

Query: 418 IEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
            EA DLF  M  +      +F   +V+SA +    L +GEQ+   +   GL     +  S
Sbjct: 201 EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENS 260

Query: 477 LVDFYCKCG 485
           LV  Y K G
Sbjct: 261 LVTMYAKAG 269


>gi|147817099|emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
          Length = 2076

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 148/576 (25%), Positives = 246/576 (42%), Gaps = 129/576 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++  + H++ +GK  H   +  G       + N LL +Y +CG+ + A  +FD  P R
Sbjct: 90  LLRTAISTHNLLLGKCTHARIVVSGTAGDHF-LTNNLLTLYSKCGSLSFACQVFDTTPER 148

Query: 71  NCFSWNAMIEGFMKL-----GHKEKSLQLFNVMPQ------------------------- 100
           +  +WNA++  +        G+ ++ L LF ++ +                         
Sbjct: 149 DLVTWNAILGAYASSVDSNDGNAQEGLHLFRLLRESLGSTTRMTLAPVLKLCSNSXCLWA 208

Query: 101 ---------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                    K    W++ + G     ++K G +  AR LF+ M  R+ + WN M+  YV+
Sbjct: 209 AKGVHGYAIKIGLVWDVFVFGTLMNIYSKCGRMXDARLLFDGMRERDVVLWNMMLKGYVQ 268

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE---YGKQIHSH------ 197
            G  +EA +LF E +      L  D F +  ++    ++   E   +  Q+ ++      
Sbjct: 269 LGLEKEAFQLFSEFHRS---GLXPDEFSVQLILNGVFEVNXDEGKWHADQVQAYXXKLSL 325

Query: 198 ------------------------------ILVNGLD--FDSVLGSSLVNLYGKCGD-FN 224
                                         + +NGL+  +D V   +L+ +     D  N
Sbjct: 326 SDDNXDVFCWNKKLSEYLWAGDNWGAIECFVNMNGLNVXYDXV---TLLEVLAAVADGLN 382

Query: 225 SANQV----LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
            + Q+    L      D F  +ALI  Y+  GKM +A  +F    D     WN+M+ GYI
Sbjct: 383 ISRQIHVHALKTSNIADSFVATALIDVYSRSGKMEEAELLFQNKDDLDLACWNAMMFGYI 442

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            +N+  +AL LF  + R+G   D  TLA+   AC  L  L+ GKQ+H H  K G   D+ 
Sbjct: 443 ISNDGNKALGLFSLINRSGEKSDQITLATAAKACGCLVLLDZGKQIHAHVIKAGFXSDLY 502

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V S +LD Y K                               CG + +A  +F  +    
Sbjct: 503 VNSGILDMYIK-------------------------------CGDMVNAGIVFNYISAPD 531

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            ++W SMI G   NG+  +AL ++  M +  +  D+++ A++I A + +++LE G Q+ A
Sbjct: 532 DVAWTSMISGCVDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGRQLHA 591

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            V  +   SD  + TSLVD Y KCG I+ D Y L +
Sbjct: 592 NVIKLDCVSDPFVGTSLVDMYAKCGNIE-DXYRLFK 626



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 168/346 (48%), Gaps = 65/346 (18%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           + F    LI  ++++G+++ A  LF +    +   WN+M+  Y+ +    +A+ LF  +N
Sbjct: 399 DSFVATALIDVYSRSGKMEEAELLFQNKDDLDLACWNAMMFGYIISNDGNKALGLFSLIN 458

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
                  + D   LAT   AC  L  L+ GKQIH+H++  G   D  + S ++++Y KC 
Sbjct: 459 RS---GEKSDQITLATAAKACGCLVLLDZGKQIHAHVIKAGFXSDLYVNSGILDMYIKC- 514

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                         G M +A  VF+  +    V W SMISG + 
Sbjct: 515 ------------------------------GDMVNAGIVFNYISAPDDVAWTSMISGCVD 544

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N  + +AL ++H+MR++GV+ D  T A+++ A S +  LE G+Q+H +  K+  + D  V
Sbjct: 545 NGNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGRQLHANVIKLDCVSDPFV 604

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            ++L+D Y+K                               CG IED   +F+ M  +++
Sbjct: 605 GTSLVDMYAK-------------------------------CGNIEDXYRLFKKMNVRNI 633

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           + WN+M+VG++Q+G+  EA++LF +M    +  D+ S   ++SAC+
Sbjct: 634 VLWNAMLVGIAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 679



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 46/267 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA   ++C     +  GKQ+H H +K G   S L + + +L MY++CG+  +A ++F+ +
Sbjct: 469 LATAAKACGCLVLLDZGKQIHAHVIKAG-FXSDLYVNSGILDMYIKCGDMVNAGIVFNYI 527

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQK-------------------- 101
              +  +W +MI G +  G+++++L++++      VMP +                    
Sbjct: 528 SAPDDVAWTSMISGCVDNGNEDQALRIYHQMRQSGVMPDEYTFATLIKASSYVTALEQGR 587

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + F    L+  +AK G ++    LF  M  RN + WN+M+    ++G
Sbjct: 588 QLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDXYRLFKKMNVRNIVLWNAMLVGIAQHG 647

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN--GLDFD 206
            A EAV LFK + S  +E    D      ++ AC+ LA L      + H + N  G++ +
Sbjct: 648 NAEEAVNLFKSMKSHGIEP---DRVSFIGILSACS-LAGLTSEAYEYFHSMPNDCGIEPE 703

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMM 233
               S LV+  G  G     ++V+  M
Sbjct: 704 IEHYSCLVDALGXAGLVQEXDKVIETM 730


>gi|302774729|ref|XP_002970781.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
 gi|300161492|gb|EFJ28107.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
          Length = 517

 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 145/495 (29%), Positives = 216/495 (43%), Gaps = 115/495 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL+ C+   S+H G++LH   L+  +   TL + N L+QMY RCG   +A  +FD+ P
Sbjct: 2   APLLRQCSKQRSLHSGRRLHAQILRHRLDRHTL-LCNLLVQMYGRCGCLDEARSIFDKTP 60

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--------------------------- 101
            RN FSW+ MI  + + GH   +L ++  M Q+                           
Sbjct: 61  ERNLFSWSIMIAAYAQNGHPTFALAVYREMLQRSIHAIDSTTYVSALSACSALGDLETGK 120

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + F    LIS ++K G L+ A   F+ + R++ + WN+MI  + +NG
Sbjct: 121 SIHERILSSKLEIDAFLGTALISMYSKCGCLEEAHECFDCVLRKDIVVWNAMIAAFAQNG 180

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDS 207
             + A+  F  +       LQ +   L + + AC+DLAALE G++IH+ I  +  L    
Sbjct: 181 HPQRALNFFHAIPRG---ELQPNNLTLVSALDACSDLAALEEGRKIHALIESSPELTLGG 237

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            +G++LVNLYGKCG                               +  DAR VFD     
Sbjct: 238 SMGNALVNLYGKCG-------------------------------RAIDARAVFDALRPR 266

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHK--MRRNGVLEDASTLASVLSACSSLGFLEH-GK 324
           + V W SMI+ Y  N    +AL LF +  M  NGV     TL SVL ACS      H GK
Sbjct: 267 TVVSWTSMIAAYAQNGHSDQALELFQRMDMAPNGV-----TLLSVLQACSEHRKGSHAGK 321

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H H    G     ++ SAL++ Y K G    A  +F++++  D I    MI+ Y    
Sbjct: 322 TIHAHIRLAGFDGSPLLDSALVNMYGKVGNLDSAMVVFTQMRERDAITWTAMISSY---- 377

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                      +Q+G   +AL LF +M    +  D  +LA V S
Sbjct: 378 ---------------------------AQHGHSRQALSLFSSMLLDGIATDAVTLACVSS 410

Query: 445 ACANISSLELGEQVF 459
           AC++   ++LG   F
Sbjct: 411 ACSHSGDVKLGWDYF 425



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 64/312 (20%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A ++  C+   +L  G+++H+ IL + LD  ++L + LV +YG+CG              
Sbjct: 2   APLLRQCSKQRSLHSGRRLHAQILRHRLDRHTLLCNLLVQMYGRCG-------------- 47

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
               CL             ++AR +FD+T + +   W+ MI+ Y  N   T AL ++ +M
Sbjct: 48  ----CL-------------DEARSIFDKTPERNLFSWSIMIAAYAQNGHPTFALAVYREM 90

Query: 296 RRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
            +  +   D++T  S LSACS+LG LE GK +H       +  D  + +AL+  YSK   
Sbjct: 91  LQRSIHAIDSTTYVSALSACSALGDLETGKSIHERILSSKLEIDAFLGTALISMYSK--- 147

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                       CG +E+A   F  +  K ++ WN+MI   +QN
Sbjct: 148 ----------------------------CGCLEEAHECFDCVLRKDIVVWNAMIAAFAQN 179

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQII 473
           G P  AL+ F  + + +L+ +  +L S + AC+++++LE G ++ A + +   L     +
Sbjct: 180 GHPQRALNFFHAIPRGELQPNNLTLVSALDACSDLAALEEGRKIHALIESSPELTLGGSM 239

Query: 474 STSLVDFYCKCG 485
             +LV+ Y KCG
Sbjct: 240 GNALVNLYGKCG 251



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           T+L N ++ +Y  CG +++A+ IF   P ++L SW+ MI   +QNG P  AL ++  M +
Sbjct: 33  TLLCNLLVQMYGRCGCLDEARSIFDKTPERNLFSWSIMIAAYAQNGHPTFALAVYREMLQ 92

Query: 430 LDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             +  +D  +  S +SAC+ +  LE G+ +  R+    L+ D  + T+L+  Y KCG ++
Sbjct: 93  RSIHAIDSTTYVSALSACSALGDLETGKSIHERILSSKLEIDAFLGTALISMYSKCGCLE 152


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 135/523 (25%), Positives = 244/523 (46%), Gaps = 78/523 (14%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            +D L  LL+    +  I + + LH   LK   L     + N ++  Y++ G   DA  +
Sbjct: 103 EVDDLFNLLRLSVKYTDIDLARALHASILK---LGEDTHLGNAVIAAYIKLGLVVDAYEV 159

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW------------- 106
           F  M   +  S++A+I  F KL  + +++QLF  M     + N++S+             
Sbjct: 160 FMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLEL 219

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LI  + K G L  A  LF++MP+R+  +WN+MI   
Sbjct: 220 EMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSL 279

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V+     +A+ LF+ LN +  +  + D F L+T++ ACA   A   G++IH++ +  GL+
Sbjct: 280 VKGLSYEKALELFRVLNQN--KGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLE 337

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +  + ++++  Y +CG  N    +   M   D    + +I+ Y   G ++ A  +F++ 
Sbjct: 338 NNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKM 397

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            + +SV +N++++G+  NNE  +AL LF +M + G      TL  V++AC  L  LE  +
Sbjct: 398 PEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISR 457

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+HG   K G   +  + +AL+D  SK                               CG
Sbjct: 458 QIHGFIIKFGFRSNACIEAALIDMCSK-------------------------------CG 486

Query: 385 RIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCN-MNKLDLRMDKFSLAS 441
           R++DA  +F+++     + I   SMI G ++NG P EA+ LF    ++  + +D+ +  S
Sbjct: 487 RMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTS 546

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ++  C  +   E+G+Q+  +    G  ++  +  S++  Y KC
Sbjct: 547 ILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKC 589



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 198/452 (43%), Gaps = 100/452 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C   H+   G+++H + ++ G+ N+ L ++N ++  Y RCG+      LF+  
Sbjct: 308 LSTLLTACARCHARIQGREIHAYAIRIGLENN-LSVSNAIIGFYTRCGSLNHVAALFER- 365

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                         MP ++  +W  +I+ + + G +  A  +FN
Sbjct: 366 ------------------------------MPVRDIITWTEMITAYMEFGLVDLAVDMFN 395

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP +N++++N+++  + +N    +A+ LF  +   + E  +   F L  VI AC  L  
Sbjct: 396 KMPEKNSVSYNALLTGFCKNNEGLKALNLFVRM---VQEGAELTDFTLTGVINACGLLLK 452

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE  +QIH  I+  G   ++ + ++L+++  KCG                          
Sbjct: 453 LEISRQIHGFIIKFGFRSNACIEAALIDMCSKCG-------------------------- 486

Query: 248 YANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DA 304
                +M+DA R+F    T   +S++  SMI GY  N    EA+ LF++ +  G +  D 
Sbjct: 487 -----RMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDE 541

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
               S+L  C +LGF E GKQ+H  A K G   ++ V ++++  YSK             
Sbjct: 542 VAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSK------------- 588

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             C  I+DA   F TMP   ++SWN +I G   +    EAL ++
Sbjct: 589 ------------------CYNIDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALAIW 630

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGE 456
            +M K  ++ D  +   ++SA    SS  L E
Sbjct: 631 SSMEKAGIKPDAITFVLIVSAYKFTSSNLLDE 662



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 186/386 (48%), Gaps = 37/386 (9%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +I+ + K G +  A  +F  M   + ++++++I  + +     EA++LF  +    + 
Sbjct: 141 NAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMR---IS 197

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++ + +    ++ AC     LE G Q+H+  +  G      + ++L+ LYGK       
Sbjct: 198 GIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGK------- 250

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                   CG ++ A  +FD         WN+MIS  +      
Sbjct: 251 ------------------------CGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYE 286

Query: 287 EALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           +AL LF  + +N G   D  TL+++L+AC+       G+++H +A ++G+ +++ V++A+
Sbjct: 287 KALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAI 346

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y++ G  +    LF  + V D I    MIT Y   G ++ A  +F  MP K+ +S+N
Sbjct: 347 IGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYN 406

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +++ G  +N   ++AL+LF  M +    +  F+L  VI+AC  +  LE+  Q+   +   
Sbjct: 407 ALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKF 466

Query: 466 GLDSDQIISTSLVDFYCKCGFIKMDE 491
           G  S+  I  +L+D   KCG  +MD+
Sbjct: 467 GFRSNACIEAALIDMCSKCG--RMDD 490


>gi|302820593|ref|XP_002991963.1| hypothetical protein SELMODRAFT_134528 [Selaginella moellendorffii]
 gi|300140205|gb|EFJ06931.1| hypothetical protein SELMODRAFT_134528 [Selaginella moellendorffii]
          Length = 304

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 161/294 (54%), Gaps = 8/294 (2%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           + A LL+ C    S+   K+LH   +  G+ +ST  +AN L+Q+Y RCG+  DA  +F  
Sbjct: 18  HWAALLRECK---SLPQAKKLHAEIIDHGLSSSTY-LANLLIQLYGRCGSVADASSVFSS 73

Query: 67  MP-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
           M   RN FSWN M   F + G   ++  LF+ MP +N  SWN +++ +A++ ++  A  L
Sbjct: 74  MAGNRNIFSWNIMFTVFAQQGDLGRARDLFDRMPDRNVVSWNAMLACYAQSSQIAQAELL 133

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  MP+R+  +WNSMI  Y +N    EA+ +F  ++   +E +  D     + + AC+ L
Sbjct: 134 FRKMPQRSLASWNSMIAAYAQNDLPEEALEIFTRMD---LEGIAPDKITFVSAVNACSSL 190

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            +L +GK     I  +GL+ D  +G+ L+ +YG+CG    A    + +K+P     +AL+
Sbjct: 191 KSLYHGKIARMKIHESGLESDVSVGNVLITMYGRCGSIQDARDCFDKIKDPSVVSWTALL 250

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
           + YA  G + +A  VFDR    + V W +MI+ +       +A+LLF +M  +G
Sbjct: 251 TAYAQRGDLQEAAMVFDRMPLKNEVSWTAMITAHTQFGHAQQAILLFRRMDLDG 304



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 129/274 (47%), Gaps = 32/274 (11%)

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN-MMKEPDDFCLSALI 245
           +L   K++H+ I+ +GL   + L + L+ LYG+CG    A+ V + M    + F  + + 
Sbjct: 28  SLPQAKKLHAEIIDHGLSSSTYLANLLIQLYGRCGSVADASSVFSSMAGNRNIFSWNIMF 87

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWN-------------------------------S 274
           + +A  G +  AR +FDR  D + V WN                               S
Sbjct: 88  TVFAQQGDLGRARDLFDRMPDRNVVSWNAMLACYAQSSQIAQAELLFRKMPQRSLASWNS 147

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MI+ Y  N+   EAL +F +M   G+  D  T  S ++ACSSL  L HGK       + G
Sbjct: 148 MIAAYAQNDLPEEALEIFTRMDLEGIAPDKITFVSAVNACSSLKSLYHGKIARMKIHESG 207

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  DV V + L+  Y + G   DA   F ++K    +    ++T Y+  G +++A  +F 
Sbjct: 208 LESDVSVGNVLITMYGRCGSIQDARDCFDKIKDPSVVSWTALLTAYAQRGDLQEAAMVFD 267

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
            MP K+ +SW +MI   +Q G   +A+ LF  M+
Sbjct: 268 RMPLKNEVSWTAMITAHTQFGHAQQAILLFRRMD 301



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 35/218 (16%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D S  A++L  C SL      K++H      G+     +A+ L+  Y + G  +DA  +F
Sbjct: 15  DHSHWAALLRECKSL---PQAKKLHAEIIDHGLSSSTYLANLLIQLYGRCGSVADASSVF 71

Query: 363 SELK--------------------------VYD------TILLNTMITVYSSCGRIEDAK 390
           S +                           ++D       +  N M+  Y+   +I  A+
Sbjct: 72  SSMAGNRNIFSWNIMFTVFAQQGDLGRARDLFDRMPDRNVVSWNAMLACYAQSSQIAQAE 131

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +FR MP +SL SWNSMI   +QN  P EAL++F  M+   +  DK +  S ++AC+++ 
Sbjct: 132 LLFRKMPQRSLASWNSMIAAYAQNDLPEEALEIFTRMDLEGIAPDKITFVSAVNACSSLK 191

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           SL  G+    ++   GL+SD  +   L+  Y +CG I+
Sbjct: 192 SLYHGKIARMKIHESGLESDVSVGNVLITMYGRCGSIQ 229


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 225/524 (42%), Gaps = 106/524 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALL 62
           +I  L  LL+ C     +   K +H   LK    N  +L + N +   Y +C +   A  
Sbjct: 67  QIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACR 126

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---------- 112
           LFD+M +RN FSW  +I G  + G      + F  M  +  F      SG          
Sbjct: 127 LFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDS 186

Query: 113 -----------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                        +AK  E++ +  +FN M   N ++WN+MI  
Sbjct: 187 IELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITG 246

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           +  N    +A  LF  +   + E +  DA     V  A   L  +   K++  + L  G+
Sbjct: 247 FTSNDLYLDAFDLFLRM---MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGV 303

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D ++++G++L+++  KC                               G + +AR +F+ 
Sbjct: 304 DSNTLVGTALIDMNSKC-------------------------------GSLQEARSIFNS 332

Query: 264 --TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
              T   +  WN+MISGY+ +  + +AL LF KM +N +  D  T  SV +A ++L  L 
Sbjct: 333 HFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLS 392

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK+VH  A K G                              L+V    + N +   Y+
Sbjct: 393 LGKKVHARAIKSG------------------------------LEVNYVSISNAVANAYA 422

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG +ED + +F  M ++ LISW S++   SQ     +A+++F NM    +  ++F+ +S
Sbjct: 423 KCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSS 482

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           V+ +CAN+  LE G+QV   +  +GLD D+ I ++LVD Y KCG
Sbjct: 483 VLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCG 526



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 215/467 (46%), Gaps = 85/467 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    SI +G  +H   + +G  + T  ++  LL MY +     D+  +F+ M   
Sbjct: 177 ILQICIGLDSIELGNMVHAQIVIRGFTSHTF-VSTALLNMYAKLQEIEDSYKVFNTMTEV 235

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF-----SWNML--------IS 111
           N  SWNAMI GF        +  LF       V P    F     +  ML        +S
Sbjct: 236 NVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVS 295

Query: 112 GFA--------------------KAGELKTARTLFND---MPRRNAIAWNSMIHCYVRNG 148
           G+A                    K G L+ AR++FN      R NA  WN+MI  Y+R+G
Sbjct: 296 GYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNA-PWNAMISGYLRSG 354

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  +A+ LF ++  +    +  D +   +V  A A L  L  GK++H+  + +GL+ + V
Sbjct: 355 FNEKALELFAKMCQN---DIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYV 411

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
              S+ N                           A+ + YA CG + D R+VF+R  D  
Sbjct: 412 ---SISN---------------------------AVANAYAKCGSLEDVRKVFNRMEDRD 441

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W S+++ Y   +E  +A+ +F  MR  G+  +  T +SVL +C++L  LE+G+QVHG
Sbjct: 442 LISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHG 501

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
             CKVG+  D  + SAL+D Y+K G   DA K+F+ +   DT+    +I  ++  G ++D
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 389 AKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           A  +FR M      PN   +++  ++   S  G   E L  F  M K
Sbjct: 562 ALQLFRRMVQLGVEPNA--VTFLCVLFACSHGGLVEEGLQYFKLMKK 606



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 180/390 (46%), Gaps = 78/390 (20%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MPRRNCFSWNAM 78
           ++  K++  + L+ G+ ++TL +   L+ M  +CG+  +A  +F+   +  R    WNAM
Sbjct: 288 VNKAKEVSGYALELGVDSNTL-VGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAM 346

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKN----DFSW---------------------------- 106
           I G+++ G  EK+L+LF  M Q +     +++                            
Sbjct: 347 ISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL 406

Query: 107 --------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
                   N + + +AK G L+  R +FN M  R+ I+W S++  Y +     +A+ +F 
Sbjct: 407 EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS 466

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
            + +   E +  + F  ++V+ +CA+L  LEYG+Q+H  I   GLD D  + S+LV++Y 
Sbjct: 467 NMRA---EGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYA 523

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           KCG    A +V N +   D    +A+I+G+A  G ++D                      
Sbjct: 524 KCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD---------------------- 561

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVID 337
                    AL LF +M + GV  +A T   VL ACS  G +E G Q      K  G++ 
Sbjct: 562 ---------ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVP 612

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ++   + ++D  S+ G  +DA +  S + V
Sbjct: 613 EMEHYACIVDLLSRVGHLNDAMEFISRMPV 642



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 31/248 (12%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           L+ +   Y+ C  ++ A R+FD+ +  ++  W  +I+G   N    +    F +M+  G+
Sbjct: 108 LNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGI 167

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D    + +L  C  L  +E G  VH      G      V++ALL+ Y+K         
Sbjct: 168 FPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAK--------- 218

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                    IED+  +F TM   +++SWN+MI G + N   ++A
Sbjct: 219 ----------------------LQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDA 256

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
            DLF  M    +  D  +   V  A   +  +   ++V      +G+DS+ ++ T+L+D 
Sbjct: 257 FDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDM 316

Query: 481 YCKCGFIK 488
             KCG ++
Sbjct: 317 NSKCGSLQ 324



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L SC     +  G+Q+H    K G L+    I + L+ MY +CG   DA  +F+ +
Sbjct: 480 FSSVLVSCANLCLLEYGQQVHGIICKVG-LDMDKCIESALVDMYAKCGCLGDAKKVFNRI 538

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              +  SW A+I G  + G  + +LQLF  M Q     N  ++  ++   +  G ++   
Sbjct: 539 SNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGL 598

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M +   +      +  ++    R G   +A+     +       ++ +  +  T+
Sbjct: 599 QYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRM------PVEPNEMVWQTL 652

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC     +E G+     IL    + +S     L N Y + G +     + ++MKE
Sbjct: 653 LGACRVHGNVELGELAAQKILSFKAE-NSATYVLLSNTYIESGSYKDGLSLRHVMKE 708


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 211/427 (49%), Gaps = 72/427 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C+   ++  G+Q+H H +K GI  S + I +  +QMY   G   DA  +F      
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGI-GSDVHIKSAGIQMYASFGRLEDARKMFYS-GES 195

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +   WN MI+G++K G  E +  LF  MP KN  SWN++I+G AK G L  AR LF++M 
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMS 255

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ I+W+SM+  Y+  G  +EA+ +F+++     E  +   FIL++V+ AC+++ A++ 
Sbjct: 256 ERDEISWSSMVDGYISAGRYKEALEIFQQMQR---EETRPGRFILSSVLAACSNIGAIDQ 312

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H+++  N +  D+VLG++L+++Y KCG  +   +V   MKE + F  +A+I G A 
Sbjct: 313 GRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAI 372

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+  DA  +F +  +                           +M+ NG+     TL  V
Sbjct: 373 HGRAEDALELFSKLQEG--------------------------RMKPNGI-----TLVGV 401

Query: 311 LSACSSLGFLEHG-------KQVHG-------HACKVGVI---------DDVIVASALLD 347
           L+AC+  GF++ G       ++ +G       + C V ++         +D+I +  +  
Sbjct: 402 LTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP 461

Query: 348 TYSKRGMPSDAC-------------KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
             +  G    AC             K+  EL+  ++     +  +Y+  GR +D   I +
Sbjct: 462 NAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRK 521

Query: 395 TMPNKSL 401
            M N+ +
Sbjct: 522 LMKNRGI 528



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 181/402 (45%), Gaps = 68/402 (16%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A  +F+ +P  N   WN +I   + N    +A+  +  +  D     + + F   T+  A
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA----RPNKFTYPTLFKA 141

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C+   A++ G+QIH H++ +G+  D  + S+ + +Y   G    A ++     E D  C 
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCW 200

Query: 242 SALISGYANCG-------------------------------KMNDARRVFDRTTDTSSV 270
           + +I GY  CG                                + DAR++FD  ++   +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+SM+ GYIS     EAL +F +M+R         L+SVL+ACS++G ++ G+ VH + 
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +  +  D ++ +ALLD Y+K                               CGR++   
Sbjct: 321 KRNSIKLDAVLGTALLDMYAK-------------------------------CGRLDMGW 349

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M  + + +WN+MI GL+ +G   +AL+LF  + +  ++ +  +L  V++ACA+  
Sbjct: 350 EVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409

Query: 451 SLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            ++ G ++F  +    G+D +      +VD   + G     E
Sbjct: 410 FVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAE 451



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 35/286 (12%)

Query: 237 DDFCLSALISGYANC--GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           D +   AL+  YAN      + A +VF    + +  +WN +I G + NN+  +A+  + +
Sbjct: 64  DHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGR 123

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M  +    +  T  ++  ACS    ++ G+Q+HGH  K G+  DV + SA +  Y+  G 
Sbjct: 124 MVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGR 182

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             DA K+F   +  D +  NTMI  Y  CG +E AK +F  MP K++ SWN MI GL++ 
Sbjct: 183 LEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKG 241

Query: 415 GS-------------------------------PIEALDLFCNMNKLDLRMDKFSLASVI 443
           G+                                 EAL++F  M + + R  +F L+SV+
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +AC+NI +++ G  V A +    +  D ++ T+L+D Y KCG + M
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDM 347



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 17/236 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C+   +I  G+ +H  +LK+  +     +   LL MY +CG       +F+EM
Sbjct: 297 LSSVLAACSNIGAIDQGRWVHA-YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM 355

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             R  F+WNAMI G    G  E +L+LF+ + +     N  +   +++  A AG +    
Sbjct: 356 KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGL 415

Query: 124 TLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F  M     +      +  M+    R+G   EA  L   +       ++ +A +   +
Sbjct: 416 RIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMP------MKPNAAVWGAL 469

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +GAC      +  +++   IL+     +S     L N+Y K G F+  +++  +MK
Sbjct: 470 LGACRIHGNFDLAERV-GKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMK 524


>gi|225436291|ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 906

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 225/519 (43%), Gaps = 121/519 (23%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----------P 99
           MY+  G   +A  LFDEMP R+  SW  ++ G+ + G   + L +F  M          P
Sbjct: 1   MYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLCGSGGGLLRP 60

Query: 100 QK---------------------------------NDFSWNMLISGFAKAGELKTARTLF 126
                                              + F  N L+S +   G L+ A  +F
Sbjct: 61  DSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAAVVF 120

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             + + + + W+S++  YV+NG   E +R+F ++ S  +E    DAF  + V+GAC +L 
Sbjct: 121 GGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEP---DAFAFSMVLGACTNLE 177

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
             ++G Q H +I+  G D    L +SL++ Y K                           
Sbjct: 178 CWDFGTQAHCYIIKMGFDSCLYLENSLMDFYAK--------------------------- 210

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
               CG +   RRVF   ++ + V WN+ I+GY+ N    EAL +F  +       D  +
Sbjct: 211 ----CGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFS 266

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT----------YSKRGMP- 355
           L S+L A S LG L+HGK++HG+  + G+  +  V S+LLD           Y +  +P 
Sbjct: 267 LLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVVSSLLDMYIGCIDHESLYPRVEVPL 326

Query: 356 ----------------------------SDACKLFSELKVY-----DTILLNTMITVYSS 382
                                        ++ K+F  L +      D+ +L+++I +YS 
Sbjct: 327 KLLNYLEGGGYDEFIMTSLLKWCSLESSLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSK 386

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG  E AK +F  +       W+++I G S NG   EAL LF  M    ++ ++F+  SV
Sbjct: 387 CGIWEAAKRVFTRVEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSV 446

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           I AC  + +L  G+++  ++   G +S+  +  +L++ Y
Sbjct: 447 ILACLALENLRKGKELHCKILRSGYESNFSVVNTLINLY 485



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 148/569 (26%), Positives = 251/569 (44%), Gaps = 125/569 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L++C     +  G+ +H   +K+  +  +  + N L+ MY  CG   DA ++F  +
Sbjct: 65  FAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSF-VENALVSMYGSCGALEDAAVVFGGI 123

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS-----------W---- 106
            + +   W++++ G++K G +E+ L++F       + P    FS           W    
Sbjct: 124 DKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGT 183

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+  +AK G+L+  R +F+ M  +N ++WN+ I+ YV N 
Sbjct: 184 QAHCYIIKMGFDSCLYLENSLMDFYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNF 243

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+R+F+ L   + E  QCD F L +++ A + L  L++GK+IH +IL  G++ +  
Sbjct: 244 HYLEALRIFQIL---MEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRY 300

Query: 209 LGSSLVNLYGKCGDFNSAN-------QVLNMMK--------------------------- 234
           + SSL+++Y  C D  S         ++LN ++                           
Sbjct: 301 VVSSLLDMYIGCIDHESLYPRVEVPLKLLNYLEGGGYDEFIMTSLLKWCSLESSLESGKM 360

Query: 235 ----------EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                     + D + LS+LI  Y+ CG    A+RVF R     +  W+++ISG+  N  
Sbjct: 361 FHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFTRVEQPDTAPWSALISGHSWNGC 420

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL LF KM+ +G+  +  T  SV+ AC +L  L  GK++H    + G   +  V + 
Sbjct: 421 FAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELHCKILRSGYESNFSVVNT 480

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L++ YS+      A KL                     C  I D++           ISW
Sbjct: 481 LINLYSELWQHKQALKL---------------------CSMIPDSE-----------ISW 508

Query: 405 NSMIVGL--SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           N +I     +++   I  L     ++  +L  D  S   + ++C++   L +G Q  A +
Sbjct: 509 NFLIRACLGAEDYEIIHKLLWRIQVSHGNL--DPVSACDIFASCSSPVLLNVGTQAHAYM 566

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           T  GL S   IS SL+  Y  CG  K DE
Sbjct: 567 TKRGLISHPTISNSLIQMYSACG--KFDE 593



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 199/453 (43%), Gaps = 88/453 (19%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN-----PTDALLL----------FDEMP 68
           GK++H + L+ GI  +   + + LL MY+ C +     P   + L          +DE  
Sbjct: 283 GKEIHGYILRAGI-ETNRYVVSSLLDMYIGCIDHESLYPRVEVPLKLLNYLEGGGYDEFI 341

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
             +   W ++ E  ++ G    SL +  +  + + +  + LI  ++K G  + A+ +F  
Sbjct: 342 MTSLLKWCSL-ESSLESGKMFHSL-IIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFTR 399

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           + + +   W+++I  +  NG   EA++LF+++  D    ++ + F   +VI AC  L  L
Sbjct: 400 VEQPDTAPWSALISGHSWNGCFAEALKLFRKMQFD---GIKANEFTFTSVILACLALENL 456

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             GK++H  IL +G + +  + ++L+NLY +      A ++ +M+  PD           
Sbjct: 457 RKGKELHCKILRSGYESNFSVVNTLINLYSELWQHKQALKLCSMI--PD----------- 503

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL--LLFHKMRRNGVLEDAST 306
                              S + WN +I   +   ED E +  LL+     +G L+  S 
Sbjct: 504 -------------------SEISWNFLIRACL-GAEDYEIIHKLLWRIQVSHGNLDPVSA 543

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
              + ++CSS   L  G Q H +  K G+I    ++                        
Sbjct: 544 -CDIFASCSSPVLLNVGTQAHAYMTKRGLISHPTIS------------------------ 578

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                  N++I +YS+CG+ ++A   F  MP K   SW S++    ++G P EAL+L   
Sbjct: 579 -------NSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVEHGHPSEALNLISQ 631

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           M   +   D+ +  SV++ACA +  ++   ++F
Sbjct: 632 MRWKNKPADQSTFRSVLNACAQMGLVDEAFRLF 664



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL----DLFCNMNKLDLRM 434
           +Y + G +++A+ +F  MP +SL+SW  ++ G +++G   E L    D+ C      LR 
Sbjct: 1   MYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWDMLCGSGGGLLRP 60

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           D F  A V+ AC  +  L  G  V   V       D  +  +LV  Y  CG ++
Sbjct: 61  DSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALE 114



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 10/153 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +  SC++   ++VG Q H +  K+G++ S   I+N L+QMY  CG   +A+  F+ MP +
Sbjct: 546 IFASCSSPVLLNVGTQAHAYMTKRGLI-SHPTISNSLIQMYSACGKFDEAVQAFNLMPEK 604

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTARTLF 126
           +  SW +++   ++ GH  ++L L + M  KN      ++  +++  A+ G +  A  LF
Sbjct: 605 DTCSWTSILSARVEHGHPSEALNLISQMRWKNKPADQSTFRSVLNACAQMGLVDEAFRLF 664

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAV 154
             M     I      ++ M+    R G   E +
Sbjct: 665 FSMKEVYGIEPLEEHYSCMVEVLGRAGMFEEVL 697


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 225/524 (42%), Gaps = 106/524 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALL 62
           +I  L  LL+ C     +   K +H   LK    N  +L + N +   Y +C +   A  
Sbjct: 67  QIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACR 126

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---------- 112
           LFD+M +RN FSW  +I G  + G      + F  M  +  F      SG          
Sbjct: 127 LFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDS 186

Query: 113 -----------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                        +AK  E++ +  +FN M   N ++WN+MI  
Sbjct: 187 IELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITG 246

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           +  N    +A  LF  +   + E +  DA     V  A   L  +   K++  + L  G+
Sbjct: 247 FTSNDLYLDAFDLFLRM---MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGV 303

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D ++++G++L+++  KC                               G + +AR +F+ 
Sbjct: 304 DSNTLVGTALIDMNSKC-------------------------------GSLQEARSIFNS 332

Query: 264 --TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
              T   +  WN+MISGY+ +  + +AL LF KM +N +  D  T  SV +A ++L  L 
Sbjct: 333 HFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLS 392

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK+VH  A K G                              L+V    + N +   Y+
Sbjct: 393 LGKKVHARAIKSG------------------------------LEVNYVSISNAVANAYA 422

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG +ED + +F  M ++ LISW S++   SQ     +A+++F NM    +  ++F+ +S
Sbjct: 423 KCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSS 482

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           V+ +CAN+  LE G+QV   +  +GLD D+ I ++LVD Y KCG
Sbjct: 483 VLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCG 526



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 215/467 (46%), Gaps = 85/467 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    SI +G  +H   + +G  + T  ++  LL MY +     D+  +F+ M   
Sbjct: 177 ILQICIGLDSIELGNMVHAQIVIRGFTSHTF-VSTALLNMYAKLQEIEDSYKVFNTMTEV 235

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF-----SWNML--------IS 111
           N  SWNAMI GF        +  LF       V P    F     +  ML        +S
Sbjct: 236 NVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVS 295

Query: 112 GFA--------------------KAGELKTARTLFND---MPRRNAIAWNSMIHCYVRNG 148
           G+A                    K G L+ AR++FN      R NA  WN+MI  Y+R+G
Sbjct: 296 GYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNA-PWNAMISGYLRSG 354

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  +A+ LF ++  +    +  D +   +V  A A L  L  GK++H+  + +GL+ + V
Sbjct: 355 FNEKALELFAKMCQN---DIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYV 411

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
              S+ N                           A+ + YA CG + D R+VF+R  D  
Sbjct: 412 ---SISN---------------------------AVANAYAKCGSLEDVRKVFNRMEDRD 441

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + W S+++ Y   +E  +A+ +F  MR  G+  +  T +SVL +C++L  LE+G+QVHG
Sbjct: 442 LISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHG 501

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
             CKVG+  D  + SAL+D Y+K G   DA K+F+ +   DT+    +I  ++  G ++D
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 389 AKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           A  +FR M      PN   +++  ++   S  G   E L  F  M K
Sbjct: 562 ALQLFRRMVQLGVEPNA--VTFLCVLFACSHGGLVEEGLQYFKLMKK 606



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 180/390 (46%), Gaps = 78/390 (20%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MPRRNCFSWNAM 78
           ++  K++  + L+ G+ ++TL +   L+ M  +CG+  +A  +F+   +  R    WNAM
Sbjct: 288 VNKAKEVSGYALELGVDSNTL-VGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAM 346

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKN----DFSW---------------------------- 106
           I G+++ G  EK+L+LF  M Q +     +++                            
Sbjct: 347 ISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGL 406

Query: 107 --------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
                   N + + +AK G L+  R +FN M  R+ I+W S++  Y +     +A+ +F 
Sbjct: 407 EVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFS 466

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
            + +   E +  + F  ++V+ +CA+L  LEYG+Q+H  I   GLD D  + S+LV++Y 
Sbjct: 467 NMRA---EGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYA 523

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           KCG    A +V N +   D    +A+I+G+A  G ++D                      
Sbjct: 524 KCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD---------------------- 561

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVID 337
                    AL LF +M + GV  +A T   VL ACS  G +E G Q      K  G++ 
Sbjct: 562 ---------ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVP 612

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ++   + ++D  S+ G  +DA +  S + V
Sbjct: 613 EMEHYACIVDLLSRVGHLNDAMEFISRMPV 642



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 31/248 (12%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           L+ +   Y+ C  ++ A R+FD+ +  ++  W  +I+G   N    +    F +M+  G+
Sbjct: 108 LNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGI 167

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D    + +L  C  L  +E G  VH      G      V++ALL+ Y+K         
Sbjct: 168 FPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAK--------- 218

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                    IED+  +F TM   +++SWN+MI G + N   ++A
Sbjct: 219 ----------------------LQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDA 256

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
            DLF  M    +  D  +   V  A   +  +   ++V      +G+DS+ ++ T+L+D 
Sbjct: 257 FDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDM 316

Query: 481 YCKCGFIK 488
             KCG ++
Sbjct: 317 NSKCGSLQ 324



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L SC     +  G+Q+H    K G L+    I + L+ MY +CG   DA  +F+ +
Sbjct: 480 FSSVLVSCANLCLLEYGQQVHGIICKVG-LDMDKCIESALVDMYAKCGCLGDAKKVFNRI 538

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
              +  SW A+I G  + G  + +LQLF  M Q     N  ++  ++   +  G ++   
Sbjct: 539 SNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGL 598

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M +   +      +  ++    R G   +A+     +       ++ +  +  T+
Sbjct: 599 QYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRM------PVEPNEMVWQTL 652

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC     +E G+     IL    + +S     L N Y + G +     + ++MKE
Sbjct: 653 LGACRVHGNVELGELAAQKILSFKAE-NSATYVLLSNTYIESGSYKDGLSLRHLMKE 708


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 238/532 (44%), Gaps = 113/532 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF-DEMPR 69
            LQSC  H +++ GKQLH   +  G  + + P    L+ MY +CG   +A+L+F D    
Sbjct: 17  FLQSCADHQNLNKGKQLHSLMITYG-FSPSPPSITSLINMYSKCGQMGEAILVFYDPCHE 75

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS------------------ 105
           RN F++NA+I GF+  G   K  Q +       VMP K  F                   
Sbjct: 76  RNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGC 135

Query: 106 ------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
                        + L++ + K G ++ A+ +F ++  R+ + WN+MI+ Y + G   EA
Sbjct: 136 LLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEA 195

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + +F+ ++   V+ +    F +  ++   A    L+ GK +H  ++  G D    + ++L
Sbjct: 196 LEVFRRMH---VKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNAL 252

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           +++YGK                               C  + DA  +F+   +     WN
Sbjct: 253 IDMYGK-------------------------------CKHIGDALIIFEMINEKDIFSWN 281

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC-- 331
           S+IS +    +    L LF KM  +G+L D  T+ +VL ACS L  L HG+++HG+    
Sbjct: 282 SIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIIN 341

Query: 332 ------KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
                 + G +D+++V++A++D Y+K                               CG 
Sbjct: 342 GLGKDDENGAVDNLLVSNAVMDMYAK-------------------------------CGS 370

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           + +A  IF +M  K + SWN MI+G   +G  +EAL +F  M + + + ++ +L  V+SA
Sbjct: 371 MNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSA 430

Query: 446 CANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           C +   +  G    A++ +  G+       T ++D   + G ++ D Y ++Q
Sbjct: 431 CNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLE-DAYEIVQ 481



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 175/384 (45%), Gaps = 69/384 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H   LK G L   + + + L+  Y++ G+  DA  +F E+  R+   WNAMI G+ K
Sbjct: 130 KKIHGCLLKMG-LELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAK 188

Query: 85  LGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTART---------------- 124
           +G  +++L++F  M  K    + F+   ++S FA  G+L   +T                
Sbjct: 189 IGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSV 248

Query: 125 -------------------LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF-KELNSDL 164
                              +F  +  ++  +WNS+I  + + G     +RLF K L S +
Sbjct: 249 SNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGI 308

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +     D   + TV+ AC+ LAAL +G++IH ++++NGL  D        +  G   +  
Sbjct: 309 LP----DLVTITTVLPACSHLAALMHGREIHGYMIINGLGKD--------DENGAVDNLL 356

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            +N V++M               YA CG MN+A ++FD  +      WN MI GY  +  
Sbjct: 357 VSNAVMDM---------------YAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGY 401

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVAS 343
             EAL +F +M       +  TL  VLSAC+  GF+ HG+          GVI  +   +
Sbjct: 402 ALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYT 461

Query: 344 ALLDTYSKRGMPSDACKLFSELKV 367
            ++D   + G   DA ++  ++ +
Sbjct: 462 CVIDMLGRAGHLEDAYEIVQKMPI 485



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 33/186 (17%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +L + +   + L +C+    L  GKQ+H      G        ++L++ YSK G   +A 
Sbjct: 7   MLNNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAI 66

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            +F                 Y  C               +++ ++N++I G   NG   +
Sbjct: 67  LVF-----------------YDPC-------------HERNVFAYNAIISGFVSNGLASK 96

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
               +  M    +  DK++   V+  C  +  +   +++   +  +GL+ D  + ++LV+
Sbjct: 97  GFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGLELDVFVGSALVN 153

Query: 480 FYCKCG 485
            Y K G
Sbjct: 154 TYLKNG 159


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 177/355 (49%), Gaps = 34/355 (9%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI  ++  G +  A  LF  +       WN +I     NG + +A+ L+K +   + + +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNM---VCQGI 121

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D F    VI AC +  +++ GK +H  ++  G   D  + ++L++ Y KCG    A +
Sbjct: 122 AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALK 181

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V   M+  +    + +ISG  +CG + +ARR+FD     + V W +MI+GYI N +  EA
Sbjct: 182 VFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEA 241

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L LF +M+   +  +  T+ S++ AC+ +G L  G+ +H +A K  +   V + +AL+D 
Sbjct: 242 LELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDM 301

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           YSK G   DA +                               +F TMP KSL +WNSMI
Sbjct: 302 YSKCGSIKDAIE-------------------------------VFETMPRKSLPTWNSMI 330

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
             L  +G   EAL+LF  M +++++ D  +   V+ AC +I +++ G   F R+T
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 202/445 (45%), Gaps = 107/445 (24%)

Query: 60   ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNM----- 108
            A   +  + + N  SWN++I    + G   ++L+ F+      ++P ++ F   +     
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 109  ---LISG-------------------------FAKAGELKTARTLFNDMPRRNAIAWNSM 140
               L+SG                         ++K G+LK AR LF+++P RN ++W SM
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 141  IHCYVRNGFAREAVRLFKELNSDLVE-----RLQCDAFILATVIGACADLAALEYGKQIH 195
            I  YV+N  A  A+ LFK+   +  E      +  D+ ++ +V+ AC+ ++     + +H
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274

Query: 196  SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
              ++  G D    +G++L++ Y KCG    + +V + M+E DD   +++I+ YA  G   
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG--- 1331

Query: 256  DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSAC 314
                                +SG        EAL +FH M R+ GV  +A TL++VL AC
Sbjct: 1332 --------------------LSG--------EALEVFHGMVRHVGVRYNAVTLSAVLLAC 1363

Query: 315  SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
            +  G L  GK +H    K+ +  +V V ++++D Y K                       
Sbjct: 1364 AHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCK----------------------- 1400

Query: 375  TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
                    CGR+E AK  F  M  K++ SW +M+ G   +G   EALD+F  M +  ++ 
Sbjct: 1401 --------CGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 1452

Query: 435  DKFSLASVISACANISSLELGEQVF 459
            +  +  SV++AC++   +E G   F
Sbjct: 1453 NYITFVSVLAACSHAGLVEEGWHWF 1477



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 31/297 (10%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           +QIH+ I+ +GL  D +L   L++LY   G    A  +   ++ P  F            
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTF------------ 91

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                               WN +I     N    +AL+L+  M   G+  D  T   V+
Sbjct: 92  -------------------TWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVI 132

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            AC++   ++ GK VHG   K G   DV V + L+D Y K G    A K+F +++V + +
Sbjct: 133 KACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVV 192

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
              T+I+   SCG +++A+ IF  +P+K+++SW +MI G  +N  P EAL+LF  M   +
Sbjct: 193 SWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  +++++ S+I AC  +  L LG  +        ++    + T+L+D Y KCG IK
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 81/359 (22%)

Query: 12   LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
            ++SC+    +  G+  H      G   + L +++ L+ MY +CG   DA  LFDE+P RN
Sbjct: 1149 IKSCSALCDLVSGRMSHQQAFVFG-FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 1207

Query: 72   CFSWNAMIEGFMKLGHKEKSLQLF-------------NVMP------------------- 99
              SW +MI G+++    + +L LF             N +P                   
Sbjct: 1208 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 1267

Query: 100  ----------QKNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                       K  F       N L+  +AK G+   ++ +F+ M  ++ I+WNSMI  Y
Sbjct: 1268 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVY 1327

Query: 145  VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
             ++G + EA+ +F  +   +  R   +A  L+ V+ ACA   AL  GK IH  ++   L+
Sbjct: 1328 AQSGLSGEALEVFHGMVRHVGVRY--NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLE 1385

Query: 205  FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            ++  +G+S++++Y K                               CG++  A++ FDR 
Sbjct: 1386 YNVCVGTSIIDMYCK-------------------------------CGRVEMAKKTFDRM 1414

Query: 265  TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + +   W +M++GY  +    EAL +F+KM R GV  +  T  SVL+ACS  G +E G
Sbjct: 1415 KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 1473



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 164/378 (43%), Gaps = 76/378 (20%)

Query: 122  ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLVERLQCDAFILATVIG 180
            A   +  + + N  +WNS+I    R G + EA+R F  L    L+             I 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSS----FPCTIK 1150

Query: 181  ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            +C+ L  L  G+  H    V G                                E D F 
Sbjct: 1151 SCSALCDLVSGRMSHQQAFVFGF-------------------------------ETDLFV 1179

Query: 241  LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR--- 297
             SALI  Y+ CG++ DAR +FD     + V W SMI+GY+ N +   ALLLF        
Sbjct: 1180 SSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEET 1239

Query: 298  -----NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
                 N V  D+  + SVLSACS +      + VHG   K G    + V + L+D Y+K 
Sbjct: 1240 EVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKC 1299

Query: 353  GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
            G P  + K+F  ++  D I  N+MI VY                               +
Sbjct: 1300 GQPLVSKKVFDWMEEKDDISWNSMIAVY-------------------------------A 1328

Query: 413  QNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            Q+G   EAL++F  M + + +R +  +L++V+ ACA+  +L  G+ +  +V  + L+ + 
Sbjct: 1329 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 1388

Query: 472  IISTSLVDFYCKCGFIKM 489
             + TS++D YCKCG ++M
Sbjct: 1389 CVGTSIIDMYCKCGRVEM 1406



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 34/253 (13%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  N +I+ + K GH   +L++F  M  +N  SW  +ISG    G+L+ AR +F+++P
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +N ++W +MI+ Y+RN    EA+ LFK + +   E +  + + + ++I AC ++  L  
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQA---ENIFPNEYTMVSLIKACTEMGILTL 275

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ IH + + N ++    LG++L+++Y KCG                             
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS---------------------------- 307

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
              + DA  VF+     S   WNSMI+    +    EAL LF +M R  V  DA T   V
Sbjct: 308 ---IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGV 364

Query: 311 LSACSSLGFLEHG 323
           L AC  +  ++ G
Sbjct: 365 LCACVHIKNVKEG 377



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 134/309 (43%), Gaps = 58/309 (18%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +  +L +C+      + + +H   +KKG  + ++ + N L+  Y +CG P  +  +FD M
Sbjct: 1254 MVSVLSACSRVSGKGITEGVHGFVVKKG-FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 1312

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
              ++  SWN+MI  + + G   ++L++F+ M +                           
Sbjct: 1313 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 1372

Query: 101  --------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                    K D  +N+     +I  + K G ++ A+  F+ M  +N  +W +M+  Y  +
Sbjct: 1373 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 1432

Query: 148  GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-----KQIHSHILVNG 202
            G A+EA+ +F ++   +   ++ +     +V+ AC+    +E G        H + +  G
Sbjct: 1433 GRAKEALDIFYKM---VRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPG 1489

Query: 203  LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND-----A 257
            ++        +V+L+G+ G  N A  ++  MK   DF +   + G     K  D     A
Sbjct: 1490 IEHYGC----MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAA 1545

Query: 258  RRVFDRTTD 266
            +++F+   D
Sbjct: 1546 QKLFELDPD 1554



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 78/253 (30%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP------------- 57
           ++++C    SI +GK +H   +K G       + N L+  Y +CG+              
Sbjct: 131 VIKACTNFLSIDLGKVVHGSLIKYGFSGDVF-VQNNLIDFYFKCGHTRFALKVFEKMRVR 189

Query: 58  ------------------TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99
                              +A  +FDE+P +N  SW AMI G+++    E++L+LF  M 
Sbjct: 190 NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQ 249

Query: 100 QKNDFS--WNM-------------------------------------LISGFAKAGELK 120
            +N F   + M                                     LI  ++K G +K
Sbjct: 250 AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER--LQCDAFILATV 178
            A  +F  MPR++   WNSMI     +G  +EA+ LF E+     ER  ++ DA     V
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEM-----ERVNVKPDAITFIGV 364

Query: 179 IGACADLAALEYG 191
           + AC  +  ++ G
Sbjct: 365 LCACVHIKNVKEG 377



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  L+++C     + +G+ +H + +K  I    + +   L+ MY +CG+  DA+ +F+ M
Sbjct: 260 MVSLIKACTEMGILTLGRGIHDYAIKNCI-EIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTAR 123
           PR++  +WN+MI      G  +++L LF+ M + N      ++  ++        +K   
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGC 378

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNS 162
             F  M +   IA     +  M   Y R+    EA +  KE+ S
Sbjct: 379 AYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGS 422


>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
           communis]
 gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
           communis]
          Length = 310

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 171/328 (52%), Gaps = 35/328 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+++C     +  G+ +H H  + G L S + +   L+  Y   G   ++  +FDEM
Sbjct: 13  FSSLIKACGLASEVKFGEVVHGHVWRHG-LESHVFVQTALVDFYSTVGRIIESKKVFDEM 71

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P R+ F+W  M+    ++G    + +LF++MP+KN  +WN LI G++K  +L++A  LF+
Sbjct: 72  PERDIFAWATMVTSLARIGDMSSARRLFDMMPEKNTAAWNTLIYGYSKLRDLESAEFLFS 131

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            M  R+ I+W +M++CY +N    EA+ +F ++   +   +  D   +ATVI ACA L A
Sbjct: 132 QMHERDIISWTTMVNCYAQNKKFGEALVVFNQM---IKTGICPDEVTMATVISACAHLGA 188

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L+ GK+IH +++ NG D D  +GSSL+++Y KCG  + +  V   ++E + FC +++I G
Sbjct: 189 LDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEG 248

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A  G                                  EAL +F KM R  +  +  T 
Sbjct: 249 LAAHGYAK-------------------------------EALEMFRKMGREKIKPNGVTF 277

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGV 335
            SVL+AC+  G +E G  +   A + G+
Sbjct: 278 ISVLNACAHAGLVEEGLALRKKAPERGI 305



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 62/323 (19%)

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L  ++   ++  +++I AC   + +++G+ +H H+  +GL+    + ++LV+ Y   G  
Sbjct: 2   LRSKILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGRI 61

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY---- 279
             + +V + M E D F  + +++  A  G M+ ARR+FD   + ++  WN++I GY    
Sbjct: 62  IESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMPEKNTAAWNTLIYGYSKLR 121

Query: 280 ---------------------------ISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                                        N +  EAL++F++M + G+  D  T+A+V+S
Sbjct: 122 DLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVIS 181

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+ LG L+ GK++H +  + G   DV + S+L+D Y+K                     
Sbjct: 182 ACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAK--------------------- 220

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                     CG ++ +  +F  +  K+L  WNS+I GL+ +G   EAL++F  M +  +
Sbjct: 221 ----------CGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKI 270

Query: 433 RMDKFSLASVISACANISSLELG 455
           + +  +  SV++ACA+   +E G
Sbjct: 271 KPNGVTFISVLNACAHAGLVEEG 293



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 31/222 (13%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M R+ +L  + T +S++ AC     ++ G+ VHGH  + G+   V V +AL+D YS  G 
Sbjct: 1   MLRSKILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGR 60

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-- 412
             ++ K+F E+   D     TM+T  +  G +  A+ +F  MP K+  +WN++I G S  
Sbjct: 61  IIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMPEKNTAAWNTLIYGYSKL 120

Query: 413 -----------------------------QNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
                                        QN    EAL +F  M K  +  D+ ++A+VI
Sbjct: 121 RDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVI 180

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SACA++ +L+LG+++   V   G D D  I +SL+D Y KCG
Sbjct: 181 SACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKCG 222



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ +S+I AC   S ++ GE V   V   GL+S   + T+LVDFY   G I
Sbjct: 11  YTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGRI 61


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 213/476 (44%), Gaps = 105/476 (22%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK-- 101
           MY +C   TDAL++FD +  +N FSW  M+  + + GH  ++L+LF  M      P K  
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 102 -------------------------------NDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                          N    N L++ + K  ++  A  +F+ M 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++W +M+  Y +NG   +A+     ++++ V+  Q       T++  CA L  L+ 
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQ---VTFVTIVDVCAKLRLLDL 177

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++IH  I+  GL+ D +LG+                               AL+  Y +
Sbjct: 178 GRKIHHRIINEGLEPDGILGN-------------------------------ALVHMYGS 206

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG  +D + VF R   +S ++W +MI+G   N +  E LL+F KM   GV  +  T  S+
Sbjct: 207 CGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSM 266

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +  C +L  ++ G+          +ID  I+ S    +                     T
Sbjct: 267 VEVCRNLDAVKEGE----------MIDARILESPFCSS---------------------T 295

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           +L  ++I++Y  CG ++ AK +   M  + +++WN+M+   +QNG   EA+ L   M+  
Sbjct: 296 LLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDME 355

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCG 485
               +K +  SV+ ACAN+ +L  G ++ ARV + GL   ++ +  S++  Y KCG
Sbjct: 356 GFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCG 411



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/536 (23%), Positives = 225/536 (41%), Gaps = 110/536 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
            + Y++ +++ C    ++  G+ +    L+    +STL +A  L+ +Y +CG    A  L
Sbjct: 260 EVTYMS-MVEVCRNLDAVKEGEMIDARILESPFCSSTL-LATSLISLYGQCGILDRAKGL 317

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------ 99
            + M +R+  +WNAM+    + G   +++ L   M                         
Sbjct: 318 LEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEAL 377

Query: 100 ----------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                           Q+     N +I+ + K G+ + A ++F  MPR++ ++WN++I+ 
Sbjct: 378 SQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINA 437

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
            V N   ++A+ LF  +    +E L+ + F L +++ AC  L  L+  +QIH+     G 
Sbjct: 438 SVGNSKFQDALELFHGME---LEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGF 494

Query: 204 DFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
             +S  +G+S+VN+Y                               A CG + DA++ FD
Sbjct: 495 GGNSTAVGNSVVNMY-------------------------------ARCGSLLDAKKAFD 523

Query: 263 RTTDTSSVMWNSMISGYISNNEDT--EALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
              +   V W+ +++ Y  + +     A   F +M   G+     T  S L AC+++  L
Sbjct: 524 SLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATL 583

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           EHG+ +H  A   G ++  +V                              L NT+I +Y
Sbjct: 584 EHGRSMHRRAAASGFVETSLV------------------------------LGNTIINMY 613

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG   DAK +F  MP K LISWNS+IV  + NG  +EAL     M       D  +  
Sbjct: 614 GKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSV 673

Query: 441 SVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           S++   ++   LE G + F + +   GL+        LVD   + GF+   E  ++
Sbjct: 674 SILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELIL 729



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 132/310 (42%), Gaps = 70/310 (22%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y  C ++ DA  VFD  +  +   W  M++ Y  N    EAL LF +M+  G   D    
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA------------------------- 342
              L AC++ G L+HG+Q+H      G+  ++I++                         
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 343 ------SALLDTYSKRGMPSDACKLFSEL-----------------------------KV 367
                 +A+L  Y++ G  S A +  S +                             K+
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKI 181

Query: 368 Y----------DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           +          D IL N ++ +Y SCG  +D K +F  M   S++ W +MI G SQNG  
Sbjct: 182 HHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQY 241

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            E L +F  M+   ++ ++ +  S++  C N+ +++ GE + AR+      S  +++TSL
Sbjct: 242 EEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSL 301

Query: 478 VDFYCKCGFI 487
           +  Y +CG +
Sbjct: 302 ISLYGQCGIL 311



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 27/243 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++  G+ +H      G + ++L + N ++ MY +CG+P+DA L+FD+MP + 
Sbjct: 574 LDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKC 633

Query: 72  CFSWNAMIEGFMKLGHKEKSL-QLFNVMPQKNDFSWNMLIS---GFAKAGELKTARTLFN 127
             SWN++I  +   GH  ++L  L  ++ Q  D      +S   G + AG L+     F 
Sbjct: 634 LISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFR 693

Query: 128 DMPRRNAIAWNS-MIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
              + + +  +S  + C V    R GF   A  L   L S      Q D     T++ AC
Sbjct: 694 SSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELI--LASPAC---QADTIAWMTLLAAC 748

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMM------ 233
                 + G +    +     + +     S V   NLY   G ++ A+++  MM      
Sbjct: 749 KSYGDPQRGIRCAERV----FELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVK 804

Query: 234 KEP 236
           KEP
Sbjct: 805 KEP 807


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 184/361 (50%), Gaps = 36/361 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+++C+    +  G+ +H H  K G  +S + +   L+  Y   G   +A  +FDEM
Sbjct: 13  FSSLVKACSLVSELGFGEAVHGHIWKYG-FDSHVFVQTALVDFYGNAGKIVEARRVFDEM 71

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+ F+W  MI    + G    + QLF+ MP +N  SWN +I G+++   +++A  LF+
Sbjct: 72  SERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFS 131

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP R+ I+W +MI CY +N   REA+ +F E+ ++ ++    D   +AT+I ACA L A
Sbjct: 132 QMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDP---DEVTMATIISACAHLGA 188

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L+ GK+IH + +  G D D  +GS+L+++Y KCG  + +  V   +++ + FC +++I G
Sbjct: 189 LDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEG 248

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A                          + GY       EAL +F +M+R  +  +  T 
Sbjct: 249 LA--------------------------VHGYAE-----EALAMFSRMQREKIKPNGVTF 277

Query: 308 ASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
            SVL AC+  G +E G K+    +    +  ++     ++D   K G+  DA +L   ++
Sbjct: 278 ISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMR 337

Query: 367 V 367
           +
Sbjct: 338 M 338



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 155/319 (48%), Gaps = 62/319 (19%)

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           +F  ++++ AC+ ++ L +G+ +H HI   G D    + ++LV+ YG  G    A +V +
Sbjct: 10  SFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFD 69

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI----------- 280
            M E D F  + +IS +A  G M+ AR++FD     ++  WN+MI GY            
Sbjct: 70  EMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELL 129

Query: 281 --------------------SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
                                N +  EAL +F++M+ NG+  D  T+A+++SAC+ LG L
Sbjct: 130 FSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGAL 189

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           + GK++H +A ++G   DV + SAL+D Y+K                             
Sbjct: 190 DLGKEIHLYAMEMGFDLDVYIGSALIDMYAK----------------------------- 220

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG ++ +  +F  +  K+L  WNS+I GL+ +G   EAL +F  M +  ++ +  +  
Sbjct: 221 --CGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFI 278

Query: 441 SVISACANISSLELGEQVF 459
           SV+ AC +   +E G + F
Sbjct: 279 SVLGACTHAGLVEEGRKRF 297



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 31/211 (14%)

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY---------------- 349
           T +S++ ACS +  L  G+ VHGH  K G    V V +AL+D Y                
Sbjct: 12  TFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDEM 71

Query: 350 ---------------SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                          ++ G  S A +LF E+ V +T   N MI  YS    +E A+ +F 
Sbjct: 72  SERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFS 131

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MPN+ +ISW +MI   SQN    EAL +F  M    +  D+ ++A++ISACA++ +L+L
Sbjct: 132 QMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDL 191

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G+++      +G D D  I ++L+D Y KCG
Sbjct: 192 GKEIHLYAMEMGFDLDVYIGSALIDMYAKCG 222



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 118/239 (49%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A ++ +C    ++ +GK++HL+ ++ G  +  + I + L+ MY +CG+   +L++F ++
Sbjct: 176 MATIISACAHLGALDLGKEIHLYAMEMG-FDLDVYIGSALIDMYAKCGSLDKSLVVFFKL 234

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
            ++N F WN++IEG    G+ E++L +F+ M ++    N  ++  ++     AG ++  R
Sbjct: 235 RKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGR 294

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M R  +I      +  M+    + G   +A+ L + +      R++ ++ I   +
Sbjct: 295 KRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSM------RMEPNSVIWGAL 348

Query: 179 IGACADLAALEYGKQI--HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +G C     L+  +     S +L      +S   + LVN+Y +   ++    +   MKE
Sbjct: 349 LGGCKLHRNLKIAQVAVNESKVLEPN---NSGYYTLLVNMYAEVNRWSEVANIRATMKE 404



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           F+ +S++ AC+ +S L  GE V   +   G DS   + T+LVDFY   G I
Sbjct: 11  FTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKI 61


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 134/521 (25%), Positives = 243/521 (46%), Gaps = 78/521 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDEMPR 69
           LL++CNT + I+   Q+H   +K G+ ++ L +   ++    +  G+   A  +FDE+P+
Sbjct: 41  LLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQ 97

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTARTL 125
            + F WN MI+G+ ++   E  + L+ +M   N     F++  L+ GF K   LK  + L
Sbjct: 98  PSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVL 157

Query: 126 FN----------------------------DMPRR--------NAIAWNSMIHCYVRNGF 149
            N                            +  R+          + WN ++  Y R   
Sbjct: 158 LNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKR 217

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL-DFDSV 208
             E+ RLF E+     E +  ++  L  ++ AC+ L  L  GK I++  +  G+ + + +
Sbjct: 218 YEESKRLFIEMEKK-CECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLI 276

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L ++L++++  CG+ ++A  V + MK  D    +++++G+AN  +++ AR+ FD+  +  
Sbjct: 277 LENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERD 336

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W +MI GY+  N   E L LF  M+ + V  D  T+ S+L+AC+ LG LE G+    
Sbjct: 337 YVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKT 396

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +  K  + +D  + +AL+D Y K G    A K+F+E                        
Sbjct: 397 YIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNE------------------------ 432

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                  M  K   +W +MIVGL+ NG   EAL +F  M +  +  D+ +   V+ AC +
Sbjct: 433 -------MQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTH 485

Query: 449 ISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIK 488
           +  +  G+  F+ + +  G+  +      +VD   + G +K
Sbjct: 486 VGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLK 526



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 157/361 (43%), Gaps = 66/361 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    +  GK ++  ++K+GI+   L + N L+ M+  CG    A  +FDEM
Sbjct: 242 LVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEM 301

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+  SW +++ GF      + + + F+ MP+++  SW  +I G+ +    K   TLF 
Sbjct: 302 KTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFR 361

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           DM   N                                  ++ D F + +++ ACA L A
Sbjct: 362 DMQMSN----------------------------------VKPDEFTMVSILTACAHLGA 387

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE G+   ++I  N +  D+ +G++L+++Y KCG+   A ++ N M++ D F  +A+I G
Sbjct: 388 LELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVG 447

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            AN                               N    EAL +F  M    V  D  T 
Sbjct: 448 LAN-------------------------------NGHGEEALTMFSYMLEASVTPDEITY 476

Query: 308 ASVLSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             V+ AC+ +G +  GK    + A + G+  ++     ++D   + G   +A ++   + 
Sbjct: 477 IGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMP 536

Query: 367 V 367
           V
Sbjct: 537 V 537



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++ +G+    +  K  I N T  I N L+ MY +CGN   A  +F+EM
Sbjct: 375 MVSILTACAHLGALELGEWAKTYIDKNKIKNDTF-IGNALIDMYFKCGNVEKAKKIFNEM 433

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
            +++ F+W AMI G    GH E++L +F+ M +     ++ ++  ++      G +   +
Sbjct: 434 QKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGK 493

Query: 124 TLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F++M  ++ I  N      M+    R G  +EA+ +   +       ++ ++ +  ++
Sbjct: 494 HFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMP------VKPNSIVWGSL 547

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
           +GAC     ++  +   + I    L+ +   G+  V   N+Y  C  + + + V  MM E
Sbjct: 548 LGACRVHKNVQLAEMAANEI----LELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMME 603


>gi|15228064|ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g36980, mitochondrial; Flags: Precursor
 gi|4883614|gb|AAD31583.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254236|gb|AEC09330.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 625

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 191/382 (50%), Gaps = 6/382 (1%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I+  AK+G + +AR +F+ MP  + +AWN+M+  Y R G  +EA+ LF +L        +
Sbjct: 11  IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLR---FSDAK 67

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D +    ++  CA L  +++G++I S ++ +G      + +SL+++YGKC D  SAN+V
Sbjct: 68  PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127

Query: 230 LNMM--KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
              M     ++    +L+  Y N  +   A  VF       +  WN MISG+    +   
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSS-LGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            L LF +M  +    D  T +S+++ACS+    + +G+ VH    K G    V   +++L
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVL 247

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y+K G   DA +    ++V   +  N++I      G  E A  +F   P K++++W +
Sbjct: 248 SFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTT 307

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI G  +NG   +AL  F  M K  +  D F+  +V+ AC+ ++ L  G+ +   +   G
Sbjct: 308 MITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCG 367

Query: 467 LDSDQIISTSLVDFYCKCGFIK 488
                 +  +LV+ Y KCG IK
Sbjct: 368 FQGYAYVGNALVNLYAKCGDIK 389



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 216/487 (44%), Gaps = 71/487 (14%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY    +L +C +  ++  G+++    ++ G   S LP+ N L+ MY +C +   A  +F
Sbjct: 70  DYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCAS-LPVNNSLIDMYGKCSDTLSANKVF 128

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
            +M                                 +N+ +W  L+  +  A + + A  
Sbjct: 129 RDM-----------------------------CCDSRNEVTWCSLLFAYMNAEQFEAALD 159

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC-A 183
           +F +MP+R A AWN MI  +   G     + LFKE+   L    + D +  ++++ AC A
Sbjct: 160 VFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEM---LESEFKPDCYTFSSLMNACSA 216

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           D + + YG+ +H+ +L NG        +S+++ Y K G  + A + L  ++       ++
Sbjct: 217 DSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNS 276

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I      G+   A  VF    + + V W +MI+GY  N +  +AL  F +M ++GV  D
Sbjct: 277 IIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSD 336

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
                +VL ACS L  L HGK +HG     G      V +AL++ Y+K            
Sbjct: 337 HFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAK------------ 384

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CG I++A   F  + NK L+SWN+M+     +G   +AL L
Sbjct: 385 -------------------CGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKL 425

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI---IGLDSDQIISTSLVDF 480
           + NM    ++ D  +   +++ C++   +E G  +F  +     I L+ D +  T ++D 
Sbjct: 426 YDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHV--TCMIDM 483

Query: 481 YCKCGFI 487
           + + G +
Sbjct: 484 FGRGGHL 490



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           L++ I+  A  G++  AR+VFD   +  +V WN+M++ Y       EA+ LF ++R +  
Sbjct: 7   LTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDA 66

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  +  ++LS C+SLG ++ G+++     + G    + V ++L+D Y K      A K
Sbjct: 67  KPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANK 126

Query: 361 LFSEL--KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           +F ++     + +   +++  Y +  + E A  +F  MP +   +WN MI G +  G   
Sbjct: 127 VFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLE 186

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISAC-ANISSLELGEQVFARVTIIGLDSDQIISTSL 477
             L LF  M + + + D ++ +S+++AC A+ S++  G  V A +   G  S      S+
Sbjct: 187 SCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSV 246

Query: 478 VDFYCKCG 485
           + FY K G
Sbjct: 247 LSFYTKLG 254



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 62/114 (54%)

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           + L + I   +  GRI  A+ +F  MP    ++WN+M+   S+ G   EA+ LF  +   
Sbjct: 5   VRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFS 64

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           D + D +S  +++S CA++ +++ G ++ + V   G  +   ++ SL+D Y KC
Sbjct: 65  DAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKC 118


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 230/480 (47%), Gaps = 73/480 (15%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K+LH H +  G+ N    ++  +    ++  +   A  +F+++     F WN ++ G  +
Sbjct: 328 KKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQ 387

Query: 85  -----------LGHKEKSLQLFNVM-------------PQKND---------------FS 105
                         +EK ++  N+              P++ +               F 
Sbjct: 388 SDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFV 447

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N LI  +A  G+L  AR++F++M  ++ ++WNS+I  Y +    +E + LF+ + +   
Sbjct: 448 SNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQA--- 504

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           E +Q D   +  VI AC  L        +  +I  N ++ D  LG++L++ Y + G   S
Sbjct: 505 EEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQS 564

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           A +V + MK+ +   L+A+I  YA  G +  A+++FD+  +   + W+SMI  Y   +  
Sbjct: 565 AEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHF 624

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           +++L LF +M+R  V  DA  +ASVLSAC+ LG L+ GK +H +  +  +  D I+ ++L
Sbjct: 625 SDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSL 684

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D ++K G   +A ++F+E++  DT+                               SWN
Sbjct: 685 IDMFAKCGCMQEALQVFTEMEEKDTL-------------------------------SWN 713

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           S+I+GL+ NG   EAL++F +M     R ++ +   V+ ACAN   ++ G   F R+  +
Sbjct: 714 SIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTV 773



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 193/397 (48%), Gaps = 43/397 (10%)

Query: 104 FSWNMLISGFA-KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
           ++ + +I  +A +  +L  A  +F  +       WN+++    ++   ++A+  +K+   
Sbjct: 344 YAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQE 403

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
              + ++ D      V+ ACA   A + G+Q+HSH++  G   D  + +SL++LY     
Sbjct: 404 ---KGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLY----- 455

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                     A CG +  AR +FD       V WNS+I GY   
Sbjct: 456 --------------------------AACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQR 489

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
           N   E L LF  M+   V  D  T+  V+SAC+ LG       +  +  +  +  DV + 
Sbjct: 490 NRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLG 549

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           + L+D Y + G    A K+FS++K  +T+ LN MI  Y+  G +  AK IF  +PNK LI
Sbjct: 550 NTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLI 609

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW+SMI   SQ     ++L+LF  M +  ++ D   +ASV+SACA++ +L+LG+ +   V
Sbjct: 610 SWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYV 669

Query: 463 TIIGLDSDQIISTSLVDFYCKCG--------FIKMDE 491
               + +D I+  SL+D + KCG        F +M+E
Sbjct: 670 RRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEE 706



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 123/524 (23%), Positives = 232/524 (44%), Gaps = 88/524 (16%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMI 79
           I +G+ LH + +KKGI+ S   + N L+ +Y + G+  ++L +FDEM  RRN  SW ++I
Sbjct: 88  ILMGEMLHGYCVKKGIM-SDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSII 146

Query: 80  EGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            GF   G   ++L+LF  M     + N  ++  +I+  +  G ++     F  M     I
Sbjct: 147 SGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNI 206

Query: 136 -----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                 +  +I    R G   EA ++ + L       ++ +  +   ++G C+    +E 
Sbjct: 207 DPEIKHFGCIIDMLGRAGRLCEAEQIIEGLP------VEVNVIVWRILLGCCSKYGEVEM 260

Query: 191 GKQIHSHI----LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--------------- 231
           GK+    I      +G DF +VL S+++N  G+  D   A ++L+               
Sbjct: 261 GKRAIKMISDLERESGGDF-AVL-SNVLNELGRFSDAEQARKLLDERKIVKVPGLALVVT 318

Query: 232 ----MMKEPDDFCLSALISGYANCG------------KMND---ARRVFDRTTDTSSVMW 272
               MM+         ++SG  NC             + +D   A +VF++    ++ +W
Sbjct: 319 RSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLW 378

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N+++ G   ++   +A++ + K +  G+  D  T   VL AC+     + G+Q+H H  K
Sbjct: 379 NTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIK 438

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G + D+ V+++L+  Y+  G    A  +F E+ V D +  N++I  YS   R +     
Sbjct: 439 LGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFK----- 493

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
                                     E L LF  M   +++ DK ++  VISAC ++   
Sbjct: 494 --------------------------EVLALFELMQAEEVQADKVTMVKVISACTHLGDW 527

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            + + +   +    ++ D  +  +L+D+YC+ G ++  E    Q
Sbjct: 528 SMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQ 571



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/494 (23%), Positives = 205/494 (41%), Gaps = 135/494 (27%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C   ++   G+Q+H H +K G L     ++N L+ +Y  CG+   A  +FDEM  +
Sbjct: 416 VLKACAKTYAPKEGEQMHSHVIKLGFLLDIF-VSNSLIHLYAACGDLVCARSIFDEMLVK 474

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW----- 106
           +  SWN++I G+ +    ++ L LF +M  +                    D+S      
Sbjct: 475 DVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMV 534

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N LI  + + G+L++A  +F+ M  +N +  N+MIH Y + G   
Sbjct: 535 RYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLV 594

Query: 152 EAVRLFKEL-NSDLVE---------------------------RLQCDAFILATVIGACA 183
            A ++F ++ N DL+                            +++ DA ++A+V+ ACA
Sbjct: 595 SAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACA 654

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            L AL+ GK IH ++  N +  D+++ +SL++++ KCG    A QV   M+E D    ++
Sbjct: 655 HLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNS 714

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           +I G AN                               N  + EAL +F+ M   G   +
Sbjct: 715 IILGLAN-------------------------------NGFEDEALNIFYSMLTEGPRPN 743

Query: 304 ASTLASVLSACSSLGFLEHG-------KQVHG-------HACKVGVID------------ 337
             T   VL AC++   ++ G       K VH        + C VG++             
Sbjct: 744 EVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFI 803

Query: 338 -------DVIVASALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
                  D +V   LL    T+    +   A K  SEL   ++     +  +Y+S  R  
Sbjct: 804 NEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWS 863

Query: 388 DAKHIFRTMPNKSL 401
           DA ++ + M + ++
Sbjct: 864 DALNVRQWMADTAV 877



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 180/404 (44%), Gaps = 73/404 (18%)

Query: 98  MPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
           MP KN  SWN++I+GFA  GE++ AR LF+ MP RN ++W  +I  Y R     EAV LF
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
           + +   +   +      +  V+ A ++L  +  G+ +H + +  G+  D+ +G+SL++LY
Sbjct: 61  RHM---MAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLY 117

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMI 276
            K G                                + ++ +VFD   D  + V W S+I
Sbjct: 118 AKIGS-------------------------------VQNSLKVFDEMLDRRNLVSWTSII 146

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG------------- 323
           SG+  +    EAL LF +MRR G+  +  T  SV++ACS  G +E G             
Sbjct: 147 SGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNI 206

Query: 324 -KQVHGHACKVGVID-------------------DVIVASALLDTYSKRG---MPSDACK 360
             ++    C + ++                    +VIV   LL   SK G   M   A K
Sbjct: 207 DPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIK 266

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           + S+L+         +  V +  GR  DA+   + +  + ++    + + ++++   +EA
Sbjct: 267 MISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLALVVTRSFVMMEA 326

Query: 421 L-DLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARV 462
           +  L  ++    L   +++++ VI + A   S L    +VF ++
Sbjct: 327 VKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQI 370



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/491 (20%), Positives = 200/491 (40%), Gaps = 91/491 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN-------- 96
           N ++  +   G    A LLFD+MP RN  SW  +I+G+ +     +++ LF         
Sbjct: 10  NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGIS 69

Query: 97  --------VMPQKNDFS-----------------------WNMLISGFAKAGELKTARTL 125
                   V+P  ++                          N LI  +AK G ++ +  +
Sbjct: 70  PSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKV 129

Query: 126 FNDM-PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           F++M  RRN ++W S+I  +  +G + EA+ LF E+       ++ +     +VI AC+ 
Sbjct: 130 FDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR---AGIRPNRITFLSVINACSH 186

Query: 185 LAALEYGKQ-IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLS 242
              +E G     S +    +D +      ++++ G+ G    A Q++  +  E +     
Sbjct: 187 GGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWR 246

Query: 243 ALISGYANCGKMNDARRVFDRTTDTS-------SVMWNSMIS-GYISNNEDTEALLLFHK 294
            L+   +  G++   +R     +D         +V+ N +   G  S+ E    LL   K
Sbjct: 247 ILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERK 306

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           + +         LA V++   S   +E  K++H H    G+ +     S ++ +Y+    
Sbjct: 307 IVK------VPGLALVVT--RSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYA---- 354

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                     L+  D +                 A  +F  + + +   WN+++ GL+Q+
Sbjct: 355 ----------LQQSDLVF----------------AHKVFEQIESPTTFLWNTLLRGLAQS 388

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
            +P +A+  +    +  ++ D  +   V+ ACA   + + GEQ+ + V  +G   D  +S
Sbjct: 389 DAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVS 448

Query: 475 TSLVDFYCKCG 485
            SL+  Y  CG
Sbjct: 449 NSLIHLYAACG 459



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 67/124 (54%)

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           + + + +  N +IT ++  G IE A+ +F  MP ++++SW  +I G ++     EA+ LF
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +M    +   + ++ +V+ A +N+  + +GE +       G+ SD  +  SL+D Y K 
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120

Query: 485 GFIK 488
           G ++
Sbjct: 121 GSVQ 124


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 239/518 (46%), Gaps = 91/518 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILN-STLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L++      +++GKQ+H H  K G  + S++ I N L+ MY +CG   DA  +FD +  
Sbjct: 16  VLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITE 75

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM------P---------------QKNDFSW-- 106
           R+  SWN++I    +    E +++ F +M      P               +K D  W  
Sbjct: 76  RDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLG 135

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ +AK G L  A++L      R+ + WNSMI  + +N 
Sbjct: 136 KQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNE 195

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+   + +   ++E ++ D    A+V+ AC+ L  L  GK+IH++ L      D V
Sbjct: 196 RFMEALMFLRLM---VLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRT----DDV 248

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +S V                           SAL+  Y NCG++   R VFD   D  
Sbjct: 249 IENSFVG--------------------------SALVDMYCNCGQVESGRLVFDSVLDRK 282

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             +WN+MI+GY  +  D +AL+LF +M    G+  +A+T++S++ A      +   + +H
Sbjct: 283 IGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIH 342

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G+  K G+  +  + +AL+D YS+ G    + ++F  ++  D +  NT+IT Y  CGR  
Sbjct: 343 GYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSS 402

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA  +   M      S        + +G        + +  ++  + +  +L +V+  CA
Sbjct: 403 DALLLLHEMQRIEEKS--------TYDGD-------YNDEKQVPFKPNSITLMTVLPGCA 447

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++S+L  G+++ A      L S   + ++LVD Y KCG
Sbjct: 448 SLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCG 485



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 172/387 (44%), Gaps = 71/387 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++ + K G L  A  +F+ +  R+ ++WNS+I    R      A++ F+ +   L+E
Sbjct: 51  NTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLM---LME 107

Query: 167 RLQCDAFILATVIGACADLA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             +  +F L ++  AC++L     L  GKQIH      G                     
Sbjct: 108 GFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG--------------------- 146

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                          F  +AL++ YA  G+++DA+ +     D   V WNSMIS +  N 
Sbjct: 147 -----------HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNE 195

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVA 342
              EAL+    M   GV  D  T ASVL ACS L  L  GK++H +A +   VI++  V 
Sbjct: 196 RFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVG 255

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           SAL+D                               +Y +CG++E  + +F ++ ++ + 
Sbjct: 256 SALVD-------------------------------MYCNCGQVESGRLVFDSVLDRKIG 284

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFAR 461
            WN+MI G +Q+    +AL LF  M     L  +  +++S++ A      +   E +   
Sbjct: 285 LWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGY 344

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
           V   GL++++ +  +L+D Y + G IK
Sbjct: 345 VIKRGLETNRYLQNALIDMYSRMGDIK 371



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 203/484 (41%), Gaps = 126/484 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C+    +  GK++H + L+   +     + + L+ MY  CG      L+FD +
Sbjct: 219 FASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSV 278

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMP----------- 99
             R    WNAMI G+ +  H EK+L LF                 +++P           
Sbjct: 279 LDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRK 338

Query: 100 ------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                       + N +  N LI  +++ G++KT++ +F+ M  R+ ++WN++I  YV  
Sbjct: 339 EGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVIC 398

Query: 148 GFAREAVRLFKEL-------------NSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           G + +A+ L  E+             N +     + ++  L TV+  CA L+AL  GK+I
Sbjct: 399 GRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEI 458

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H++ + N L     +GS+LV++Y KCG                  CL             
Sbjct: 459 HAYAIRNLLASQVTVGSALVDMYAKCG------------------CL------------- 487

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-----VLEDASTLAS 309
           N ARRVFD+    + + WN +I  Y  + +  E+L LF  M   G     V     T  +
Sbjct: 488 NLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIA 547

Query: 310 VLSACSSLGFLEHG-------KQVHG-------HAC---KVGVIDDVIVASALLDT---- 348
           + ++CS  G ++ G       K  HG       +AC    VG    V  A  L++T    
Sbjct: 548 LFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSG 607

Query: 349 YSKRGMPSD---ACKLFSELKVYDTILLN-------------TMITVYSSCGRIEDAKHI 392
           + K G  S    AC+++  +++ +    N              +  +YSS G  + A ++
Sbjct: 608 FDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNL 667

Query: 393 FRTM 396
            R M
Sbjct: 668 RRRM 671



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 205/474 (43%), Gaps = 106/474 (22%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA---LLLFDEMPRRNCFSWNAMI 79
           +GKQ+H    +KG   +     N L+ MY + G   DA   L+LF++   R+  +WN+MI
Sbjct: 134 LGKQIHGCCFRKGHWRTF--SNNALMAMYAKLGRLDDAKSLLVLFED---RDLVTWNSMI 188

Query: 80  ------EGFMKL----------GHKEKSLQLFNVMPQ----------------------- 100
                 E FM+           G K   +   +V+P                        
Sbjct: 189 SSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDV 248

Query: 101 -KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
            +N F  + L+  +   G++++ R +F+ +  R    WN+MI  Y ++    +A+ LF E
Sbjct: 249 IENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIE 308

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           + +     L  +A  +++++ A      +   + IH +++  GL+ +  L ++L+++Y +
Sbjct: 309 MEA--AAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSR 366

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                           G +  ++R+FD   D   V WN++I+ Y
Sbjct: 367 M-------------------------------GDIKTSKRIFDSMEDRDIVSWNTIITSY 395

Query: 280 ISNNEDTEALLLFHKMRR-------NGVLEDAS---------TLASVLSACSSLGFLEHG 323
           +     ++ALLL H+M+R       +G   D           TL +VL  C+SL  L  G
Sbjct: 396 VICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKG 455

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K++H +A +  +   V V SAL+D Y+K G  + A ++F ++ + + I  N +I  Y   
Sbjct: 456 KEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMH 515

Query: 384 GRIEDAKHIFRTM---------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           G+ +++  +F  M            + +++ ++    S +G   E L LF  M 
Sbjct: 516 GKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMK 569



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 142/328 (43%), Gaps = 77/328 (23%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGL-DFDSV-LGSSLVNLYGKCGDFNSANQ 228
           D F    V+ A A +  L  GKQIH+H+   G   F SV + ++LVN+YGKC        
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC-------- 60

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                  G + DA +VFDR T+   V WNS+IS      E   A
Sbjct: 61  -----------------------GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVA 97

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSL---GFLEHGKQVHGHACKVGVIDDVIVASAL 345
           +  F  M   G    + TL S+  ACS+L     L  GKQ+HG   + G           
Sbjct: 98  IKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG----------- 146

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
                                 + T   N ++ +Y+  GR++DAK +     ++ L++WN
Sbjct: 147 ---------------------HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWN 185

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           SMI   SQN   +EAL     M    ++ D  + ASV+ AC+++  L  G+++ A     
Sbjct: 186 SMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA----Y 241

Query: 466 GLDSDQIISTS-----LVDFYCKCGFIK 488
            L +D +I  S     LVD YC CG ++
Sbjct: 242 ALRTDDVIENSFVGSALVDMYCNCGQVE 269



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV--IDDVIVASALLDTYSKRGMP 355
           +G   D     +VL A + +  L  GKQ+H H  K G      V + + L++ Y K G  
Sbjct: 4   SGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGL 63

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
            DA K+F  +   D +  N++I+        E A   FR M
Sbjct: 64  GDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLM 104


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 234/475 (49%), Gaps = 93/475 (19%)

Query: 29  LHFLKKGIL----NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           +HF+ +GI     +  +PI  R  Q        + +L  FDE+ +      +A+ +G   
Sbjct: 1   MHFVIRGITFHGPHFKIPIIYRSFQ--------SSSLHTFDELIKTYTRD-HALNQG--- 48

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
             H    L + + +   N+F+ + LIS + +  +L   R LF+ +P+ N      +I  Y
Sbjct: 49  -KHLHARL-IVSGLASSNNFA-SKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAY 105

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            R+GF ++ + +F E+ +   ERL+ + F++ +V+ AC  +  L+ GK +HS IL +  +
Sbjct: 106 SRHGFYQDVLDVFSEMQN---ERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFE 162

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D V+ ++L+++Y +C     A +V + M+E D   L+A++ GYA  G   +   + ++ 
Sbjct: 163 SDVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQM 222

Query: 265 T----DTSSVMWNSMISGY-----------------------------------ISNNED 285
                  + V WN++ISG+                                   + N+ +
Sbjct: 223 QMLDIKPNLVTWNTLISGFAQAGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHN 282

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
             A   F +M ++G   +++T++S+L AC+SL  + HG+++HG+A  +GV +D+ V SA+
Sbjct: 283 EAAFAAFKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAI 342

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D YSK                               CG I +A+ +F  MP +  ++WN
Sbjct: 343 VDMYSK-------------------------------CGLISEARMLFSKMPERHTVTWN 371

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVF 459
           SMI G + +G   EA++LF  M K +  ++D  S  +V++AC++   +ELG+ +F
Sbjct: 372 SMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSHGRLVELGQSLF 426



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 190/424 (44%), Gaps = 85/424 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L++C     +  GK LH   L+  +  S + +   L+ MY RC +   A  +FD M
Sbjct: 133 IPSVLRACGHVFDLQTGKILHSVILRH-LFESDVVVNTALIDMYSRCRHVEKARKVFDGM 191

Query: 68  PRRNCFSWNAMIEGFMKLGHKEK------SLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
             ++  + NAM+ G+ + G  ++       +Q+ ++ P  N  +WN LISGFA+AG+   
Sbjct: 192 QEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKP--NLVTWNTLISGFAQAGDKVM 249

Query: 122 ARTLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF---- 173
            + LF  M       + I+W S+I  +V+N     A   FK++       LQ  A+    
Sbjct: 250 VQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQM-------LQHGAYPNSA 302

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            +++++ ACA LA + +G+++H +    G++ D  + S++V++Y KCG  + A  + + M
Sbjct: 303 TISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKM 362

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            E      +++I GYAN G  ++A  +F++                    E TEA  +  
Sbjct: 363 PERHTVTWNSMIFGYANHGYCDEAIELFNQM-------------------EKTEAKKI-- 401

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
                    D  +  +VL+ACS           HG   ++G        S  L  + K  
Sbjct: 402 ---------DHLSFTAVLTACS-----------HGRLVELG-------QSLFLLMHEK-- 432

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLS 412
                 K+   L+ Y       MI +    G++ +A  + +TMP    L  W +++    
Sbjct: 433 -----YKIVPRLEHY-----ACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGALLGACR 482

Query: 413 QNGS 416
           Q+G 
Sbjct: 483 QHGE 486



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 74/342 (21%)

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           AL  GK +H+ ++V+GL   +   S L++ Y +    +   ++ + + +P+ +  + LI 
Sbjct: 44  ALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIG 103

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
            Y+  G   D   VF       S M N                    ++R N  +     
Sbjct: 104 AYSRHGFYQDVLDVF-------SEMQNE-------------------RLRPNKFV----- 132

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           + SVL AC  +  L+ GK +H    +     DV+V +AL+D YS+      A K+F  ++
Sbjct: 133 IPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEKARKVFDGMQ 192

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEA 420
             D + LN M+  Y+  G  ++   +   M      PN  L++WN++I G +Q G  +  
Sbjct: 193 EKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPN--LVTWNTLISGFAQAGDKVMV 250

Query: 421 LDLFCNMNKLDLRMDKFSLASVIS-----------------------------------A 445
            +LF  M+      D  S  SVIS                                   A
Sbjct: 251 QELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPA 310

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           CA+++++  G ++      IG++ D  + +++VD Y KCG I
Sbjct: 311 CASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLI 352



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           F +  +++ +  + ++  ++K G +  AR LF+ MP R+ + WNSMI  Y  +G+  EA+
Sbjct: 328 FAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMPERHTVTWNSMIFGYANHGYCDEAI 387

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI-----HSHILVNGLDFDSVL 209
            LF ++     E  + D      V+ AC+    +E G+ +       + +V  L+  +  
Sbjct: 388 ELFNQMEK--TEAKKIDHLSFTAVLTACSHGRLVELGQSLFLLMHEKYKIVPRLEHYAC- 444

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDA 257
              +++L G+ G  + A  ++  M  EPD F   AL+      G+++ A
Sbjct: 445 ---MIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGALLGACRQHGEIDLA 490



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 10/180 (5%)

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASAL------LDTYSKRGMPSDACKLFSELKVYDTIL 372
           F+  G   HG   K+ +I     +S+L      + TY++    +    L + L V     
Sbjct: 3   FVIRGITFHGPHFKIPIIYRSFQSSSLHTFDELIKTYTRDHALNQGKHLHARLIVSGLAS 62

Query: 373 LNT----MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
            N     +I+ Y+   ++   + +F  +P  +      +I   S++G   + LD+F  M 
Sbjct: 63  SNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQ 122

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              LR +KF + SV+ AC ++  L+ G+ + + +     +SD +++T+L+D Y +C  ++
Sbjct: 123 NERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVE 182


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 223/516 (43%), Gaps = 110/516 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L    T  S+  G  LH H LK G+L      +N LL +Y RC  P+ A  +FDE+P   
Sbjct: 11  LARFGTSRSLFAGAHLHSHLLKSGLLAG---FSNHLLTLYSRCRLPSAARAVFDEIPDPC 67

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW--------------------- 106
             SW++++  +   G    +L  F  M  +    N+F+                      
Sbjct: 68  HVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAV 127

Query: 107 -----------NMLISGFAKAGELKTARTLFNDM----PRRNAIAWNSMIHCYVRNGFAR 151
                      N L++ +   G +  AR +F++       RNA++WN+MI  YV+N  + 
Sbjct: 128 ATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSG 187

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ +F+E+   +    + + F  + V+ AC     LE G+Q+H  ++  G         
Sbjct: 188 DAIGVFREM---VWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGY-------- 236

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                  E D F  +AL+  Y+  G +  A  VF++      V 
Sbjct: 237 -----------------------EKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVS 273

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+ ISG +++  D  AL L  +M+ +G++ +  TL+SVL AC+  G    G+Q+HG   
Sbjct: 274 WNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMV 333

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     D  VA  L+D Y+K G   DA K+F  +   D IL N +I+             
Sbjct: 334 KAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALIS------------- 380

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK--LDLRMDKFSLASVISACANI 449
                             G S +G   E L LF  M K  LDL +++ +LASV+ + A+ 
Sbjct: 381 ------------------GCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASS 422

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++    QV A    IGL SD  +   L+D Y KCG
Sbjct: 423 EAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCG 458



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/513 (26%), Positives = 227/513 (44%), Gaps = 111/513 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM----PRRNCFSWN 76
           +  G Q+H   +   +++    +AN L+ +Y   G   +A  +FDE       RN  SWN
Sbjct: 116 VRFGAQVHALAVATRLVHDVF-VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWN 174

Query: 77  AMIEGFMKLGHKEKSLQLFNVM------P------------------------------- 99
            MI  ++K      ++ +F  M      P                               
Sbjct: 175 TMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRT 234

Query: 100 --QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
             +K+ F+ N L+  ++K G+++ A T+F  MP  + ++WN+ I   V +G    A+ L 
Sbjct: 235 GYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELL 294

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
            ++ S     L  + F L++V+ ACA   A   G+QIH  ++    DFD  +   LV++ 
Sbjct: 295 LQMKS---SGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDM- 350

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                                         YA  G ++DAR+VFD       ++WN++IS
Sbjct: 351 ------------------------------YAKHGFLDDARKVFDFMPRRDLILWNALIS 380

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDA--STLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           G   +    E L LFH+MR+ G+  D   +TLASVL + +S   + H +QVH  A K+G+
Sbjct: 381 GCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGL 440

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
           + D  V + L+D+Y K                               CG+++ A  +F+ 
Sbjct: 441 LSDSHVINGLIDSYWK-------------------------------CGQLDYAIKVFKE 469

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
             +  +IS  +M+  LSQ     +A+ LF  M +  L  D F L+S+++AC ++S+ E G
Sbjct: 470 SRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQG 529

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +QV A +      SD     +LV  Y KCG I+
Sbjct: 530 KQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIE 562



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 131/515 (25%), Positives = 222/515 (43%), Gaps = 104/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C     +  G+Q+H   ++ G        AN L+ MY + G+   A  +F++MP  
Sbjct: 211 VVNACTGSRDLEAGRQVHGAVVRTGYEKDVF-TANALVDMYSKLGDIEMAATVFEKMPAA 269

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQL----------------------------FNVMPQKN 102
           +  SWNA I G +  GH  ++L+L                            FN+  Q +
Sbjct: 270 DVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIH 329

Query: 103 DFSWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            F               L+  +AK G L  AR +F+ MPRR+ I WN++I     +G   
Sbjct: 330 GFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHG 389

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E + LF  +  + ++ L  +   LA+V+ + A   A+ + +Q+H+               
Sbjct: 390 EVLSLFHRMRKEGLD-LDVNRTTLASVLKSTASSEAICHTRQVHA--------------- 433

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
               L  K G  +            D   ++ LI  Y  CG+++ A +VF  +     + 
Sbjct: 434 ----LAEKIGLLS------------DSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIIS 477

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
             +M++     +   +A+ LF +M R G+  D+  L+S+L+AC+SL   E GKQVH H  
Sbjct: 478 STTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLI 537

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     DV   +AL+  Y+K                               CG IEDA  
Sbjct: 538 KRQFTSDVFAGNALVYAYAK-------------------------------CGSIEDADM 566

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F  +P + ++SW++MI GL+Q+G    ALDLF  M    +  +  +L SV+SAC +   
Sbjct: 567 AFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGL 626

Query: 452 LELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG 485
           ++  ++ F  +    G+D  +     ++D   + G
Sbjct: 627 VDDAKKYFESMKETFGIDRTEEHYACMIDILGRAG 661



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 38/250 (15%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L++ Y+ C   + AR VFD   D   V W+S+++ Y +N    +ALL F  MR  GV  +
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCN 102

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
              L  VL     + F   G QVH  A    ++ DV VA+AL                  
Sbjct: 103 EFALPVVLKCAPDVRF---GAQVHALAVATRLVHDVFVANAL------------------ 141

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM----PNKSLISWNSMIVGLSQNGSPIE 419
                        + VY   G +++A+ +F         ++ +SWN+MI    +N    +
Sbjct: 142 -------------VAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGD 188

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           A+ +F  M     R ++F  + V++AC     LE G QV   V   G + D   + +LVD
Sbjct: 189 AIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVD 248

Query: 480 FYCKCGFIKM 489
            Y K G I+M
Sbjct: 249 MYSKLGDIEM 258



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+    S +   N L+  Y +CG+  DA + F  +
Sbjct: 513 LSSLLNACTSLSAYEQGKQVHAHLIKRQ-FTSDVFAGNALVYAYAKCGSIEDADMAFSGL 571

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P R   SW+AMI G  + GH +++L LF+ M  +    N  +   ++S    AG +  A+
Sbjct: 572 PERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAK 631

Query: 124 TLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M       R    +  MI    R G   +A+ L   +        Q +A +   +
Sbjct: 632 KYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMP------FQANAAVWGAL 685

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GA       E G+     +     +  S     L N Y   G ++   +V  +MK+
Sbjct: 686 LGASRVHRDPELGRMAAEKLFTLEPE-KSGTHVLLANTYASAGMWDEMAKVRKLMKD 741


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 212/455 (46%), Gaps = 99/455 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H   LK G  +  L +   L+ MY++     DA  +FD    R
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLG-FDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A                               LI+G+A  G++++A+ LF+++P
Sbjct: 129 DVVSYTA-------------------------------LITGYASRGDIRSAQKLFDEIP 157

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+MI  Y   G  +EA+ LF+E+   +   ++ D     TV+ ACA   ++E 
Sbjct: 158 VKDVVSWNAMISGYAETGCYKEALELFEEM---MKMNVRPDESTYVTVLSACAHSGSIEL 214

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS +  +G D +  + ++L++LY K                               
Sbjct: 215 GRQVHSWVDDHGFDSNLKIVNALIDLYSK------------------------------- 243

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG++  A  +F   +    + WN++I GY   N   EALLLF +M R+G   +  T+ SV
Sbjct: 244 CGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSV 303

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG ++ G+ +H +  K   GV +   + ++L+D Y+K                 
Sbjct: 304 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK----------------- 346

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A  +F +M +KSL SWN+MI G + +G    + DLF  M 
Sbjct: 347 --------------CGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMR 392

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           K+ +  D  +   ++SAC++   L+LG  +F  +T
Sbjct: 393 KIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 427



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 177/372 (47%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+MI  +  +     ++ L+  + S     L  +++    +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVS---LGLLPNSYTFPFL 70

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA       G+QIH  +L  G D D  + +SL+++Y +      A +V +     D 
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G +  A+++FD       V WN+MISGY       EAL LF +M + 
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST  +VLSAC+  G +E G+QVH      G   ++ + +AL+D YSK G    A
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I  NT+I  Y+     ++A  +F+ M              L    +P 
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM--------------LRSGETP- 295

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
                           +  ++ SV+ ACA++ ++++G    V+    + G+ +   + TS
Sbjct: 296 ----------------NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 339

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 340 LIDMYAKCGDIE 351


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 237/511 (46%), Gaps = 84/511 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            ++LHL  +K G + + L ++N L+ +Y+R G+   A  LFDEM  RN  +W  +I G+ 
Sbjct: 118 ARELHLQSIKYGFVGN-LFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 84  KLGHKEKSLQLFNVMPQ----KNDFSW--------------------------------- 106
           + G  +++   F  M +     N +++                                 
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 236

Query: 107 ----NMLISGFAKA-GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
               N+LIS +         AR++F+ +  RN+I+WNS+I  Y R G A  A  LF  + 
Sbjct: 237 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 162 SDLV--ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYG 218
            + +       DAF   +V+           G+++H+H++  GL+ + V +G+ LVN+Y 
Sbjct: 297 KEGLGFSFKPNDAFSEFSVLE-----EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYA 351

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K G    A  V  +M E D    ++LISG        DA  +F    +   V WNS+I G
Sbjct: 352 KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVI-G 410

Query: 279 YISNNED--TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
            +S++E   ++A+  F +M R G      T  ++LSA SSL   E   Q+H    K  + 
Sbjct: 411 ALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLS 470

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
           DD  + +ALL  Y K G  ++  K+F+                              R  
Sbjct: 471 DDTAIGNALLSCYGKCGEMNECEKIFA------------------------------RMS 500

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
             +  +SWNSMI G   N    +A+DL   M +   R+D F+ A+++SACA++++LE G 
Sbjct: 501 ETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGM 560

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +V A      L+SD ++ ++LVD Y KCG I
Sbjct: 561 EVHACGIRACLESDVVVGSALVDMYSKCGRI 591



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 138/540 (25%), Positives = 227/540 (42%), Gaps = 135/540 (25%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRC-GNPTDALLLFDEMPRRNCFSWNAMIEG 81
           +G Q+H   + K    S + + N L+ MY  C  +  DA  +FD +  RN  SWN++I  
Sbjct: 220 LGVQIH-GLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISV 278

Query: 82  FMKLGHKEKSLQLFNVMPQK------------NDFS------------------------ 105
           + + G    +  LF+ M ++            ++FS                        
Sbjct: 279 YSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDN 338

Query: 106 ----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK--- 158
                N L++ +AK+G +  A ++F  M  +++++WNS+I    +N  + +A  +F    
Sbjct: 339 KVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMP 398

Query: 159 ------------ELNSDLVERLQCDAFILA--------------TVIGACADLAALEYGK 192
                        L+       Q   + L                ++ A + L+  E   
Sbjct: 399 EYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSH 458

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           QIH+ +L   L  D+ +G++L++ YGKCG+ N   ++   M E  D              
Sbjct: 459 QIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRD-------------- 504

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                            V WNSMISGYI N    +A+ L   M + G   D+ T A++LS
Sbjct: 505 ----------------EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILS 548

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+S+  LE G +VH    +  +  DV+V SAL+D YSK G                   
Sbjct: 549 ACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCG------------------- 589

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                       RI+ A   F  MP +++ SWNSMI G +++G   +AL LF  M     
Sbjct: 590 ------------RIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQ 637

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGFIKMDE 491
             D  +   V+SAC+++  +E G + F  ++ +   S ++   S +VD   + G  K+DE
Sbjct: 638 PPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAG--KLDE 695



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 106/256 (41%), Gaps = 46/256 (17%)

Query: 20  SIH-VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNA 77
           S+H V  Q+H   LK  + + T  I N LL  Y +CG   +   +F  M   R+  SWN+
Sbjct: 452 SLHEVSHQIHALVLKYCLSDDT-AIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNS 510

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG--------------------- 112
           MI G++      K++ L   M QK    + F++  ++S                      
Sbjct: 511 MISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRAC 570

Query: 113 --------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
                         ++K G +  A   F  MP RN  +WNSMI  Y R+G   +A++LF 
Sbjct: 571 LESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFT 630

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLDFDSVLGSSLVNLY 217
            +   +++    D      V+ AC+ +  +E G +   S   V  L       S +V+L 
Sbjct: 631 RM---MLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLL 687

Query: 218 GKCGDFNSANQVLNMM 233
           G+ G  +     +N M
Sbjct: 688 GRAGKLDEVGDFINSM 703



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A +L +C +  ++  G ++H   ++   L S + + + L+ MY +CG    A   F+ M
Sbjct: 543 FATILSACASVATLERGMEVHACGIR-ACLESDVVVGSALVDMYSKCGRIDYASRFFELM 601

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           P RN +SWN+MI G+ + GH EK+L+LF  M
Sbjct: 602 PLRNVYSWNSMISGYARHGHGEKALKLFTRM 632


>gi|308044597|ref|NP_001182884.1| uncharacterized protein LOC100501159 [Zea mays]
 gi|238007964|gb|ACR35017.1| unknown [Zea mays]
          Length = 580

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 211/447 (47%), Gaps = 52/447 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y + G    A  LFD MP +N  +W +M+ G+ + G  +++ +LF+VMP++ND+SW
Sbjct: 34  MLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDYSW 93

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF---KELNSD 163
             ++ G+A+ G L+ AR +F+ MP+RN +AW +M+  YV  G  ++A  LF    E NS 
Sbjct: 94  TTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERNS- 152

Query: 164 LVERLQCDAFILATV-IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                  +A I   + IG  A+   L + +  H H  V       V  +++V      G 
Sbjct: 153 ----YSWNAMISGFLSIGKVAEAVQL-FERMPHRHKNV-------VSWTTMVAGLANNGL 200

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A +  + M   D    +A+I+ YAN G++N+A+R+FD       V W+++I  Y  N
Sbjct: 201 ACRAREFFDRMPAKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKN 260

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               EAL +F  MR + V  +  TL S+L    S   +   KQ+HG    +G + +  + 
Sbjct: 261 ERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEV---KQIHGLVIALGFLSETSLG 317

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +ALL  YS+                                G +  A   F+ +  K  I
Sbjct: 318 NALLTMYSR-------------------------------SGDLMSAWFAFKRLEQKDAI 346

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +W S++   + +G    AL  F  M +   +    +  +V+SAC ++  +  G ++F  +
Sbjct: 347 TWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSI 406

Query: 463 T-IIGLDSDQIISTSLVDFYCKCGFIK 488
             + GL+      + LVD   + G+++
Sbjct: 407 YHVYGLEPTIEHYSCLVDLLGRAGYVR 433



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 162/353 (45%), Gaps = 42/353 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRR--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           N ++  ++  G   +A+ LF+ MP R  N  SW  M+ G    G   ++ + F+ MP K+
Sbjct: 156 NAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKD 215

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             +WN +I+ +A  G+L  A+ LF+ M  ++ + W+++I  Y +N    EA+ +F     
Sbjct: 216 TAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMF----- 270

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
            L+ R    +  + T+I       +    KQIH  ++  G   ++ LG++L+ +Y + GD
Sbjct: 271 -LLMRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMYSRSGD 329

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
             SA      +++ D    ++++  +A+ G                         GY   
Sbjct: 330 LMSAWFAFKRLEQKDAITWTSIVQAFADHG------------------------CGY--- 362

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV- 341
                ALL F +M R+G    ++T  +VLSAC  +G +  G+++      V  ++  I  
Sbjct: 363 ----HALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEH 418

Query: 342 ASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHI 392
            S L+D   + G   +A +L   ++  + D  +L T++        +E A+ +
Sbjct: 419 YSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNEVEVAREV 471



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +A+LD Y+K G    A +LF  + V + +   +M++ Y   GR+++A+ +F  MP ++  
Sbjct: 32  TAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDY 91

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
           SW +++ G ++NG   EA ++F  M + ++
Sbjct: 92  SWTTVVQGYARNGMLREAREMFDRMPQRNV 121



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 22/222 (9%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H   +  G L+ T  + N LL MY R G+   A   F  + +++  +W ++++ F  
Sbjct: 299 KQIHGLVIALGFLSET-SLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFAD 357

Query: 85  LGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-- 136
            G    +L  F  M      P    F+   ++S     G +   R +F  +     +   
Sbjct: 358 HGCGYHALLGFAQMLRHGYKPSSTTFT--AVLSACRHVGLVGKGRKMFKSIYHVYGLEPT 415

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              ++ ++    R G+ REA    KEL   + + ++ +A ILAT++GAC     +E  ++
Sbjct: 416 IEHYSCLVDLLGRAGYVREA----KELVDGMQQGMRDEA-ILATLLGACVVHNEVEVARE 470

Query: 194 IHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
           +   ++    D     G  L+ N++   G ++    V  +M+
Sbjct: 471 VGEDLV--RFDPSGTGGYRLLANVFASHGMWDETANVWKVMR 510


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 41/378 (10%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN---SDLVERLQ 169
            + A   + AR LF+ +PR       ++I    R    +E +  F  L+   SD+     
Sbjct: 29  LSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDV----- 83

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
                +  V+ +CA LAA   GKQ+H H +V GL  D  + ++LV+ Y K GD + A +V
Sbjct: 84  -PPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKV 142

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
            + M   D   ++ LI+GY+  G +  ARR+FD     +S  WNSMI+ Y    E  EAL
Sbjct: 143 FDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEAL 202

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF +M   G   +A T+A++ S C+  G LE GK                         
Sbjct: 203 RLFRRMLSEGARPNAITIATMFSICAKTGDLETGKW------------------------ 238

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
                   A  L +E  + + I+   ++ +Y  C  I++A+  F  M  + +++W++MI 
Sbjct: 239 --------ARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIA 290

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G +QNG P E+L+LF  M     + ++ +L  V+SACA + S ELG Q+ + V    L  
Sbjct: 291 GYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPL 350

Query: 470 DQIISTSLVDFYCKCGFI 487
              + ++L+D Y KCG +
Sbjct: 351 TSYLGSALIDMYTKCGHV 368



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 218/479 (45%), Gaps = 99/479 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC    +   GKQ+H H + +G+L                                 
Sbjct: 91  VVKSCAILAASRQGKQVHCHAIVRGLLG-------------------------------- 118

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F   A+++ + K G  + ++++F+ MP K+    N LI+G++K+G++  AR LF+ M 
Sbjct: 119 DIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMV 178

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           RR + +WNSMI CY   G  +EA+RLF+ +   L E  + +A  +AT+   CA    LE 
Sbjct: 179 RRTSASWNSMIACYAHGGEYQEALRLFRRM---LSEGARPNAITIATMFSICAKTGDLET 235

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK   S I    L  + ++ ++L+ +Y KC   + A +  + M++ D    S +I+GYA 
Sbjct: 236 GKWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQ 294

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+ +                               E+L LF +M+      +  TL  V
Sbjct: 295 NGRPH-------------------------------ESLELFERMKATSCKPNEVTLVGV 323

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSAC+ LG  E G Q+  H     +     + SAL+D Y+K                   
Sbjct: 324 LSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTK------------------- 364

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +  A+ +F  M +K +I+WNSM+ GL+ NG   +A+ L+  M + 
Sbjct: 365 ------------CGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEE 412

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGFIK 488
           D++ ++ +  ++++AC +   ++ G   F  +  I   S Q+   + +VD  CK G ++
Sbjct: 413 DVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLR 471


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 215/482 (44%), Gaps = 97/482 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T +   + + + C    +  +GKQ H H +  G    T+ ++N LLQ+Y+ CGN      
Sbjct: 47  TSVANFSFVFKECAKQRAHELGKQAHAHMIISG-FRPTVFVSNCLLQLYINCGN------ 99

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
                                 LG+  K   LF+ MP ++  SWN +I G+A + ++  A
Sbjct: 100 ----------------------LGYATK---LFDGMPLRDVVSWNAMIFGYAASNDMVRA 134

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
              F  MP R+ ++WNSM+  +++ G   E+V++F E+    VE    D    + ++  C
Sbjct: 135 SLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVE---FDNKSFSVILKVC 191

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           + L   + G QIH   L  G D D V GS+L+++Y                         
Sbjct: 192 SILENYKLGTQIHGIALRMGYDTDVVSGSALLDMY------------------------- 226

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                 A C +++++  VF      + + W+++I+G + NN     L +F +M++ GV  
Sbjct: 227 ------AKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGV 280

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
             S  ASVL +C++L  L  G Q+H HA K   + D IV +A LD Y+K           
Sbjct: 281 SQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAK----------- 329

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                               C  ++DA+ +F    N +L S+N+MI G SQ  +   AL 
Sbjct: 330 --------------------CNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALL 369

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           LF  ++K  L  D+ SL+  + ACA +  L  G Q+    T      +  ++ + +D Y 
Sbjct: 370 LFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYG 429

Query: 483 KC 484
           KC
Sbjct: 430 KC 431



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 61/479 (12%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L+SC T   + +G QLH H LK   +   + +    L MY +C N  DA  LFD   
Sbjct: 286 ASVLKSCATLPDLRLGTQLHAHALKSDFVKDGI-VRTATLDMYAKCNNMQDAQRLFDMSE 344

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
             N  S+NAMI G+ +  +  ++L LF  + +                            
Sbjct: 345 NLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQ 404

Query: 101 ------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 K++FS N+ ++      + K   L  A  +F++M R++A++WN++I  + +N  
Sbjct: 405 LHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQN-- 462

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             E  +    L S L   ++ D +   +V+ ACA   +L +G +IH+ I+  G+  +  +
Sbjct: 463 -EERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYI 520

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK-MNDARRVFDRTTDTS 268
           GSSLV++Y KCG  + A ++ N +     F      + Y+   + + + + + DR     
Sbjct: 521 GSSLVDMYSKCGMIDEAEKIHNKI-----FIGIGDSNTYSEHPETIEEPKGIQDRRVQEM 575

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WN++ISGY+   +  +A   F++M   G+  D  T ++VL  C++L  +  GKQ+H 
Sbjct: 576 IVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHA 635

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  K  +  DV + S L+D YSK G   D+  +F +  + D +  N MI  Y+  G  E+
Sbjct: 636 HVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEE 695

Query: 389 AKHIFRT------MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK---LDLRMDKFS 438
           A  +F +      MPN +  ++ S++   +  G     LD F  M K   LD R++ +S
Sbjct: 696 AIKLFESMVLMNIMPNHA--TFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYS 752



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 236/516 (45%), Gaps = 83/516 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C+   +  +G Q+H   L+ G  ++ +   + LL MY +C    ++  +F  MP++
Sbjct: 187 ILKVCSILENYKLGTQIHGIALRMG-YDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQK 245

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
           N  SW+A+I G ++    +  L++F  M +                              
Sbjct: 246 NWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLH 305

Query: 101 ----KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR--NGF 149
               K+DF  + ++       +AK   ++ A+ LF+     N  ++N+MI  Y +  NGF
Sbjct: 306 AHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGF 365

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
              A+ LF++L+      L  D   L+  + ACA +  L  G Q+H     +    +  +
Sbjct: 366 --RALLLFRKLSKS---SLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICV 420

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            ++ +++YGKC                                 +++A RVFD      +
Sbjct: 421 ANAFIDMYGKCE-------------------------------ALDEACRVFDEMGRKDA 449

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN++I+ +  N E ++ L +   M R+G+  D  T  SVL AC+    L HG ++H  
Sbjct: 450 VSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTT 508

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K+G+  +  + S+L+D YSK GM  +A K+ +++     I +    T       IE+ 
Sbjct: 509 IVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKI----FIGIGDSNTYSEHPETIEEP 564

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           K I      + ++SWN++I G        +A   F  M ++ +  DKF+ ++V+  CAN+
Sbjct: 565 KGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANL 624

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +S+ LG+Q+ A V    L  D  I ++LVD Y KCG
Sbjct: 625 ASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCG 660


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 144/521 (27%), Positives = 235/521 (45%), Gaps = 106/521 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PR 69
            L+ C    S  +G  +H    +  +   ++ + N L+ +Y +CG    A  +F  M   
Sbjct: 72  FLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL-NSLISLYSKCGQWEKATSIFRLMGSS 130

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNM----------------- 108
           R+  SW+AM+  F       ++L  F  M +     N++ +                   
Sbjct: 131 RDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSI 190

Query: 109 -------------------LISGFAKA-GELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                              LI  F K  G+L +A  +F  MP RNA+ W  MI   ++ G
Sbjct: 191 FGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFG 250

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +A EA+ LF ++   +    + D F L+ VI ACA++  L  G+Q+HS  + +GL  D  
Sbjct: 251 YAGEAIDLFLDM---IFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRC 307

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G  L+N+Y KC                            +  G M  AR++FD+  D +
Sbjct: 308 VGCCLINMYAKC----------------------------SVDGSMCAARKIFDQILDHN 339

Query: 269 SVMWNSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
              W +MI+GY+     D EAL LF  M    V+ +  T +S L AC++L  L  G+QV 
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            HA K+G                           FS +      + N++I++Y+  GRI+
Sbjct: 400 THAVKLG---------------------------FSSVNC----VANSLISMYARSGRID 428

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA+  F  +  K+LIS+N++I   ++N +  EAL+LF  +    +    F+ AS++S  A
Sbjct: 429 DARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAA 488

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +I ++  GEQ+ ARV   GL  +Q +  +L+  Y +CG I+
Sbjct: 489 SIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIE 529



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 227/496 (45%), Gaps = 109/496 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC-GNPTDALLLFDE 66
            A   ++C+T   + VG  +    +K G L S + +   L+ M+++  G+   A  +F++
Sbjct: 171 FAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSW------NM------ 108
           MP RN  +W  MI   M+ G+  +++ LF  M      P +   S       NM      
Sbjct: 231 MPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLG 290

Query: 109 ---------------------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                LI+ +AK    G +  AR +F+ +   N  +W +MI  Y
Sbjct: 291 QQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350

Query: 145 V-RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           V + G+  EA+ LF+ +   ++  +  + F  ++ + ACA+LAAL  G+Q+ +H +  G 
Sbjct: 351 VQKGGYDEEALDLFRGM---ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGF 407

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
              + + +SL+++Y + G                               +++DAR+ FD 
Sbjct: 408 SSVNCVANSLISMYARSG-------------------------------RIDDARKAFDI 436

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + + +N++I  Y  N    EAL LF+++   G+   A T AS+LS  +S+G +  G
Sbjct: 437 LFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG 496

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +Q+H    K G+  +  V +AL+  YS+                               C
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSR-------------------------------C 525

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G IE A  +F  M ++++ISW S+I G +++G   +AL+LF  M +  +R ++ +  +V+
Sbjct: 526 GNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVL 585

Query: 444 SACANISSLELGEQVF 459
           SAC+++  +  G + F
Sbjct: 586 SACSHVGLVNEGWKHF 601



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 195/429 (45%), Gaps = 80/429 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
           L+ ++ +C     + +G+QLH   ++ G L     +   L+ MY +C   G+   A  +F
Sbjct: 274 LSGVISACANMELLLLGQQLHSQAIRHG-LTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 65  DEMPRRNCFSWNAMIEGFM-KLGHKEKSLQLF------NVMPQKNDFS------------ 105
           D++   N FSW AMI G++ K G+ E++L LF      +V+P    FS            
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392

Query: 106 ---------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LIS +A++G +  AR  F+ +  +N I++N++I  Y
Sbjct: 393 RIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAY 452

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            +N  + EA+ LF E+     + +   AF  A+++   A +  +  G+QIH+ ++ +GL 
Sbjct: 453 AKNLNSEEALELFNEIED---QGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLK 509

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
               L  S+ N                           ALIS Y+ CG +  A +VF+  
Sbjct: 510 ----LNQSVCN---------------------------ALISMYSRCGNIESAFQVFEDM 538

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG- 323
            D + + W S+I+G+  +   T+AL LFHKM   GV  +  T  +VLSACS +G +  G 
Sbjct: 539 EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGW 598

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSS 382
           K       + GVI  +   + ++D   + G  S+A +  + +    D ++  T +     
Sbjct: 599 KHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRV 658

Query: 383 CGRIEDAKH 391
            G +E  KH
Sbjct: 659 HGNLELGKH 667



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 19/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A LL    +  +I  G+Q+H   +K G+ LN +  + N L+ MY RCGN   A  +F++
Sbjct: 480 FASLLSGAASIGTIGKGEQIHARVIKSGLKLNQS--VCNALISMYSRCGNIESAFQVFED 537

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTA 122
           M  RN  SW ++I GF K G   ++L+LF+ M ++    N+ ++  ++S  +  G +   
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
              F  M   + +      +  ++    R+G   EA++    +        + DA +  T
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMP------YKADALVWRT 651

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            +GAC     LE GK   + +++     D      L NLY     ++  + +   MKE
Sbjct: 652 FLGACRVHGNLELGKHA-AKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKE 708


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 216/442 (48%), Gaps = 38/442 (8%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G    A+ +++  P ++     A+I G  + G  + +  LF  +P+    SWN LI+G+ 
Sbjct: 305 GRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYM 364

Query: 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN-SDLVERLQCDAF 173
           + G +  A+ LF+ MP RN I+W  MI  Y +NG + EA+ L +EL+ S ++  L     
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSS--- 421

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            L ++  AC+++ ALE G Q+HS  +  G  F+S   ++L+ +YGKC +   A QV + M
Sbjct: 422 -LTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRM 480

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              D    ++ ++       +++AR  FD       V W ++IS Y    +  EA+  F 
Sbjct: 481 VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFK 540

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            M     L ++  L  +L  C SLG  + G+Q+H  A K+G+  ++IVA+AL        
Sbjct: 541 TMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANAL-------- 592

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                  I++Y  CG   D++ IF  M  + + +WN++I G +Q
Sbjct: 593 -----------------------ISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQ 628

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQI 472
           +G   EA+ ++ +M    +  ++ +   +++AC++   ++ G + F  ++   GL     
Sbjct: 629 HGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPE 688

Query: 473 ISTSLVDFYCKCGFIKMDEYYL 494
               +VD   + G ++  E ++
Sbjct: 689 HYACMVDLLGRTGDVQGAEQFI 710



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 231/501 (46%), Gaps = 64/501 (12%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y R G   +A  +FD M  RN  +WNAMI  +++ G    + +LF+ MP ++  SW
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW 161

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAI-----------------AWNSMIHCYV-RNG 148
           N +++G+  + ++  AR LF  MP RN +                 AW+  I C + R G
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD--IFCKMHREG 219

Query: 149 FARE------AVRLFKEL-NSDLVERLQCDA----FILATVIGAC--------------- 182
              +      A+   K L N D++E L+  A    F    VIG                 
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 183 ----------------ADLAALEYGKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFN 224
                             +AAL +G +I + I V   D    +   ++L+    +CG  +
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRID 339

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A  +   + EP     +ALI+GY   G +N+A+ +FD+    +++ W  MI+GY  N  
Sbjct: 340 DARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL L  ++ R+G+L   S+L S+  ACS++  LE G QVH  A KVG   +    +A
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNA 459

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  Y K      A ++FS +   D +  N+ +        +++A++ F  M ++  +SW
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSW 519

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            ++I   +      EA+  F  M       +   L  ++  C ++ + ++G+Q+      
Sbjct: 520 TTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIK 579

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
           +G+DS+ I++ +L+  Y KCG
Sbjct: 580 LGMDSELIVANALISMYFKCG 600



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 194/439 (44%), Gaps = 76/439 (17%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I    + G +  AR +F+ MPRR+ IAWNSMI  Y  NG    A  L+  ++      ++
Sbjct: 41  IRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG---NMR 97

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQ 228
             A +L+              G+ + +  + +G L+ ++V  +++++ Y + GD   A +
Sbjct: 98  TGAILLS---------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + + M   D    +++++GY +  +M DAR +F++  + + V W  MISGY       +A
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             +F KM R G+L D S  AS LSA   LG L+  + +   A K G   DV++ +A+L+ 
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 349 YSKRGMPSD-ACKLFSELKVYDTILLNTMITVYS-------------------------- 381
           YS+     D A K F  +   +    +TMI   S                          
Sbjct: 269 YSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL 328

Query: 382 -----SCGRIEDA-------------------------------KHIFRTMPNKSLISWN 405
                 CGRI+DA                               K +F  MP ++ ISW 
Sbjct: 329 ITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWA 388

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
            MI G +QNG   EAL L   +++  +     SL S+  AC+NI +LE G QV +    +
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 466 GLDSDQIISTSLVDFYCKC 484
           G   +     +L+  Y KC
Sbjct: 449 GCQFNSFACNALITMYGKC 467



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 10/243 (4%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           SA I      G++ +AR VFD       + WNSMIS Y  N     A  L+  +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG--- 94

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLDTYSKRGMPSDACK 360
            +  T A +LS    LG +   ++V       G+++   VA +A++  Y + G  + A +
Sbjct: 95  -NMRTGAILLSGYGRLGRVLEARRVFD-----GMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF  +   D    N+M+T Y    ++ DA+++F  MP ++L+SW  MI G  +  +  +A
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
            D+FC M++  L  D+ + AS +SA   + +L++ E +       G + D +I T++++ 
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 481 YCK 483
           Y +
Sbjct: 269 YSR 271



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 141/344 (40%), Gaps = 76/344 (22%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N F+ NA+I  + K  + E + Q+F+ M  K+  SWN  ++   +   L  AR  F++M 
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNML 512

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++W ++I  Y     + EA+  FK +     E    ++ IL  ++G C  L A + 
Sbjct: 513 SRDDVSWTTIISAYAHAEQSNEAMGAFKTM---FCEHELPNSPILTILLGVCGSLGASKI 569

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+QIH+  +  G+D + ++ ++L+++Y KCG                             
Sbjct: 570 GQQIHTVAIKLGMDSELIVANALISMYFKCG----------------------------- 600

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           C    D+RR+FD   +     WN++I+GY  +    EA+ ++  M               
Sbjct: 601 CA---DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHME-------------- 643

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYD 369
                                  GV+ + +    LL+  S  G+  +  K F  + + Y 
Sbjct: 644 ---------------------SAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 370 TILLNT----MITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMI 408
              L      M+ +    G ++ A+     MP     + W++++
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 109/241 (45%), Gaps = 26/241 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C +  +  +G+Q+H   +K G ++S L +AN L+ MY +CG   D+  +FD M
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLG-MDSELIVANALISMYFKCG-CADSRRIFDLM 611

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             R+ F+WN +I G+ + G   ++++++  M       N+ ++  L++  + AG +    
Sbjct: 612 EERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGW 671

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M +   +      +  M+    R G  + A +   ++       ++ D  I + +
Sbjct: 672 KFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMP------IEPDTVIWSAL 725

Query: 179 IGACADLAALEYGKQIHSHIL----VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +GAC      E GK+    +      N  ++       L N+Y   G +    +V  +MK
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNY-----VMLSNIYSSLGMWGEVAEVRKIMK 780

Query: 235 E 235
           +
Sbjct: 781 Q 781


>gi|302763041|ref|XP_002964942.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
 gi|300167175|gb|EFJ33780.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
          Length = 604

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 207/441 (46%), Gaps = 93/441 (21%)

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           ++ I+WNSM+  Y ++G   E + LF++++      ++ D+   A+++GAC+ +  LE G
Sbjct: 2   KDLISWNSMVVAYSQHGHGEEMLELFRKMD------VEPDSITYASILGACSAMELLELG 55

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           K++H+ +  +    D  L ++L+N+Y KCG   SA +V + ++  D    +A+ISG    
Sbjct: 56  KEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQH 115

Query: 252 GKMNDA------------------RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           G+  +A                  R  FDR    S   WN+MIS Y  + + +++LLLFH
Sbjct: 116 GRAREALGLFERMKAESVRIDKASRSNFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFH 175

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID---------------- 337
           +M   GV  DA T  SV+ ACSSL  LE G+ V   A  +G+ +                
Sbjct: 176 QMSLEGVKPDARTFVSVIGACSSLQALEKGRAVEEQATSMGIEEGRTALLSLYAKCGNLE 235

Query: 338 -------------DVIVASALLDTYSKRGMPSDACKLF---------------------- 362
                        +V+  ++++  Y++ G   +A +L+                      
Sbjct: 236 AARDIFDKLKYRKNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGAC 295

Query: 363 ----------------SELKVYDTILLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
                           +E K+   + L+T ++ +Y+ CG +E A   F  M  K+ ++W+
Sbjct: 296 TSYGGSAKGVEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWS 355

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +M+    Q+G   EALDL+  M     +  + +LA  ++AC+ I +L+ G+ + +R+   
Sbjct: 356 AMVGAFIQHGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQAT 415

Query: 466 -GLDSDQIISTSLVDFYCKCG 485
             L +   +  SL++ Y KCG
Sbjct: 416 ETLQNCLFLQNSLLNMYAKCG 436



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/566 (24%), Positives = 247/566 (43%), Gaps = 126/566 (22%)

Query: 1   MDTRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           MD   D +  A +L +C+    + +GK++H   + +    S   +A  L+ MY +CG   
Sbjct: 30  MDVEPDSITYASILGACSAMELLELGKEVHAR-VSRSRFKSDPALAAALINMYSKCGVLE 88

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE 118
            A  +FD +   +   WNAMI G ++ G   ++L LF  M  ++     + I        
Sbjct: 89  SARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFERMKAES-----VRID------- 136

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            K +R+ F+ M +++  AWN+MI  Y ++G A +++ LF +++   +E ++ DA    +V
Sbjct: 137 -KASRSNFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFHQMS---LEGVKPDARTFVSV 192

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---------------- 222
           IGAC+ L ALE G+ +       G++      ++L++LY KCG+                
Sbjct: 193 IGACSSLQALEKGRAVEEQATSMGIEEGR---TALLSLYAKCGNLEAARDIFDKLKYRKN 249

Query: 223 ---FNS-------------ANQVLNMMKE----PDD------------------------ 238
              +NS             A ++  +MKE    PDD                        
Sbjct: 250 VVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGVEIHS 309

Query: 239 -----------FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                      F  +A+++ YA CG++  A   F++    ++V W++M+  +I +  D E
Sbjct: 310 RITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQHGYDRE 369

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD-VIVASALL 346
           AL L+ +M   G      TLA  L+ACS +G L+ GK +H        + + + + ++LL
Sbjct: 370 ALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLL 429

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           + Y+K G  + A  +FS L+  D+                                SWN+
Sbjct: 430 NMYAKCGCLAIANTMFSNLQRRDS-------------------------------FSWNT 458

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-I 465
           +IVG + +G   E L L   M +  +  D  + A V+ AC++   L+ G   F  + +  
Sbjct: 459 IIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRSHFLSMEMEF 518

Query: 466 GLDSDQIISTSLVDFYCKCGFIKMDE 491
           G+  D      +VD   + G ++  E
Sbjct: 519 GVAHDTEHYLCMVDLLSRAGRVESAE 544



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 186/439 (42%), Gaps = 108/439 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-R 69
           ++ +C++  ++  G+ +       GI          LL +Y +CGN   A  +FD++  R
Sbjct: 192 VIGACSSLQALEKGRAVEEQATSMGIEEGRTA----LLSLYAKCGNLEAARDIFDKLKYR 247

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW------------------- 106
           +N  SWN+MI  + + G   ++L+L+ +M     Q +D ++                   
Sbjct: 248 KNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGVEI 307

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             +++ +AK GEL+TA + F  M R+NA+ W++M+  ++++G+ 
Sbjct: 308 HSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQHGYD 367

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           REA+ L+  + S   E  Q     LA  + AC+ + AL+ GK IHS I            
Sbjct: 368 REALDLYLRMVS---EGFQPSEITLAGALAACSRIGALQEGKAIHSRI------------ 412

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                         +   + N +     F  ++L++ YA CG +  A  +F       S 
Sbjct: 413 -------------QATETLQNCL-----FLQNSLLNMYAKCGCLAIANTMFSNLQRRDSF 454

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++I G+  + +  E L L  +M ++GV  D  T A VL ACS  G L+ G+      
Sbjct: 455 SWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGR------ 508

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
                       S  L    + G+             +DT     M+ + S  GR+E A+
Sbjct: 509 ------------SHFLSMEMEFGV------------AHDTEHYLCMVDLLSRAGRVESAE 544

Query: 391 HIFRTMP-NKSLISWNSMI 408
            +  +MP     + W +++
Sbjct: 545 ELVHSMPYEPPAMGWTTLL 563



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 24/238 (10%)

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           D   + WNSM+  Y  +    E L LF KM    V  D+ T AS+L ACS++  LE GK+
Sbjct: 1   DKDLISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAMELLELGKE 57

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH    +     D  +A+AL++ YSK G+   A ++F  ++  D    N MI+     GR
Sbjct: 58  VHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGR 117

Query: 386 IEDAKHIFR------------------TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
             +A  +F                    M  KS+ +WN+MI   +Q+G   ++L LF  M
Sbjct: 118 AREALGLFERMKAESVRIDKASRSNFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFHQM 177

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +   ++ D  +  SVI AC+++ +LE G  V  + T +G++  +   T+L+  Y KCG
Sbjct: 178 SLEGVKPDARTFVSVIGACSSLQALEKGRAVEEQATSMGIEEGR---TALLSLYAKCG 232



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 3/91 (3%)

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
           +K LISWNSM+V  SQ+G   E L+LF    K+D+  D  + AS++ AC+ +  LELG++
Sbjct: 1   DKDLISWNSMVVAYSQHGHGEEMLELF---RKMDVEPDSITYASILGACSAMELLELGKE 57

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           V ARV+     SD  ++ +L++ Y KCG ++
Sbjct: 58  VHARVSRSRFKSDPALAAALINMYSKCGVLE 88


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 217/444 (48%), Gaps = 75/444 (16%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM-KLGHKEKSLQLFNVMPQKN 102
           +NR++  ++R G+   AL +F+ M  +   +WN+M+ G+  + G  + + QLF+ +P+ +
Sbjct: 8   SNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPD 67

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            FS+N++++ +    ++++AR  F+ MP ++  +WN+MI  + +NG   +A  LF     
Sbjct: 68  IFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF----- 122

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
            LV  ++                                    +SV  +++++ Y + GD
Sbjct: 123 -LVMPVR------------------------------------NSVSWNAMISGYVESGD 145

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
            + A Q+  +         +A+I+G+   GK+  A + F+     + V WN+MI+GYI N
Sbjct: 146 LDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIEN 205

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
            +    L LF +M  +G   + S+L+SVL  CS+L  L+ GKQVH   CK  V  ++   
Sbjct: 206 CQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAG 265

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           ++LL  Y K                               CG +EDA  +F  MP K ++
Sbjct: 266 TSLLSMYCK-------------------------------CGDLEDAWKLFLVMPQKDVV 294

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-AR 461
           +WN+MI G +Q+G+  +AL LF  M    ++ D  +  +V+SAC +   ++LG + F + 
Sbjct: 295 TWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSM 354

Query: 462 VTIIGLDSDQIISTSLVDFYCKCG 485
           V   G+++     T +VD   + G
Sbjct: 355 VRDYGVEAKPDHYTCVVDLLGRGG 378



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 166/354 (46%), Gaps = 70/354 (19%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           + T + + + L    N    I V +QL     +  I +      N +L  Y+   +   A
Sbjct: 33  VKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSY-----NIMLACYLHNADVESA 87

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
            L FD+MP ++  SWN MI GF + G  +++ +LF VMP +N  SWN +ISG+ ++G+L 
Sbjct: 88  RLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLD 147

Query: 121 TARTL-------------------------------FNDMPRRNAIAWNSMIHCYVRNGF 149
            A+ L                               F +MP +N + WN+MI  Y+ N  
Sbjct: 148 LAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQ 207

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           A   ++LFK +   +    + +   L++V+  C++L+AL+ GKQ+H  I  + + ++   
Sbjct: 208 AENGLKLFKRM---VESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITA 264

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G+SL+++Y KCGD   A ++  +M + D    +A+ISGYA  G                 
Sbjct: 265 GTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGA---------------- 308

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                            +AL LF KMR  G+  D  T  +VLSAC+  GF++ G
Sbjct: 309 ---------------GEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLG 347


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 200/400 (50%), Gaps = 11/400 (2%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q + +    LI+ ++       A  +   +P     +++S+I+   +     +++ +F  
Sbjct: 47  QNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSR 106

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           + S     L  D+ +L  +   CA+L+A + GKQIH    V+GLD D+ +  S+ ++Y +
Sbjct: 107 MFS---HGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMR 163

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMWNSM 275
           CG    A +V + M + D    SAL+  YA  G + +  R+         + + V WN +
Sbjct: 164 CGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGI 223

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           +SG+  +    EA+++F K+   G   D  T++SVL +      L  G+ +HG+  K G+
Sbjct: 224 LSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGL 283

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
           + D  V SA++D Y K G       LF++ ++ +  + N  IT  S  G ++ A  +F  
Sbjct: 284 LKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFEL 343

Query: 396 MPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
              +++    +SW S+I G +QNG  IEAL+LF  M    ++ +  ++ S++ AC NI++
Sbjct: 344 FKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAA 403

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           L  G         + L  +  + ++L+D Y KCG I + +
Sbjct: 404 LGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQ 443



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 218/456 (47%), Gaps = 66/456 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L + C    +  VGKQ+H      G L+    +   +  MYMRCG   DA  +FD M
Sbjct: 119 LPNLFKVCAELSAFKVGKQIHCVSCVSG-LDMDAFVQGSMFHMYMRCGRMGDARKVFDRM 177

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  + +A++  + + G  E+ +++ + M            SG               
Sbjct: 178 SDKDVVTCSALLCAYARKGCLEEVVRILSEMES----------SGI-------------- 213

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                N ++WN ++  + R+G+ +EAV +F++++         D   +++V+ +  D   
Sbjct: 214 ---EANIVSWNGILSGFNRSGYHKEAVVMFQKIHH---LGFCPDQVTVSSVLPSVGDSEM 267

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+ IH +++  GL  D  + S+++++YGK G       + N  +  +    +A I+G
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327

Query: 248 YANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            +  G ++ A  +F+    +T + + V W S+I+G   N +D EAL LF +M+  GV  +
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T+ S+L AC ++  L HG+  HG A +V ++D+V V SAL+D Y+K            
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK------------ 435

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CGRI  ++ +F  MP K+L+ WNS++ G S +G   E + +
Sbjct: 436 -------------------CGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSI 476

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F ++ +  L+ D  S  S++SAC  +   + G + F
Sbjct: 477 FESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 131/264 (49%), Gaps = 4/264 (1%)

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           ++L    + D +  + LI+ Y+N    NDA  V     D +   ++S+I         T+
Sbjct: 40  RILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQ 99

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           ++ +F +M  +G++ D+  L ++   C+ L   + GKQ+H  +C  G+  D  V  ++  
Sbjct: 100 SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFH 159

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLIS 403
            Y + G   DA K+F  +   D +  + ++  Y+  G +E+   I   M +     +++S
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN ++ G +++G   EA+ +F  ++ L    D+ +++SV+ +  +   L +G  +   V 
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279

Query: 464 IIGLDSDQIISTSLVDFYCKCGFI 487
             GL  D+ + ++++D Y K G +
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHV 303



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 15/203 (7%)

Query: 55  GNPTDALLLFDEMP----RRNCFSWNAMIEG---FMKLGHKEKSLQLFNVMPQ--KNDFS 105
           G   +AL LF EM     + N  +  +M+        LGH  +S   F V      N   
Sbjct: 367 GKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHV 425

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            + LI  +AK G +  ++ +FN MP +N + WNS+++ +  +G A+E + +F+ L   + 
Sbjct: 426 GSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESL---MR 482

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFN 224
            RL+ D     +++ AC  +   + G +    +    G+       S +VNL G+ G   
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542

Query: 225 SANQVLNMMK-EPDDFCLSALIS 246
            A  ++  M  EPD     AL++
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLN 565



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 27/241 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++  G+  H   ++  +L++ + + + L+ MY +CG    + ++F+ M
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDN-VHVGSALIDMYAKCGRINLSQIVFNMM 449

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
           P +N   WN+++ GF   G  ++ + +F  + +   K DF S+  L+S   + G      
Sbjct: 450 PTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGW 509

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I      ++ M++   R G  +EA  L KE+        + D+ +   +
Sbjct: 510 KYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM------PFEPDSCVWGAL 563

Query: 179 IGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           + +C      DLA +   K  H      G     VL   L N+Y   G +   + + N M
Sbjct: 564 LNSCRLQNNVDLAEIAAEKLFHLEPENPG---TYVL---LSNIYAAKGMWTEVDSIRNKM 617

Query: 234 K 234
           +
Sbjct: 618 E 618


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 41/378 (10%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN---SDLVERLQ 169
            + A   + AR LF+ +PR       ++I    R    +E +  F  L+   SD+     
Sbjct: 29  LSDASTSRAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDV----- 83

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
                +  V+ +CA LAA   GKQ+H H +V GL  D  + ++LV+ Y K GD + A +V
Sbjct: 84  -PPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKV 142

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
            + M   D   ++ LI+GY+  G +  ARR+FD     +S  WNSMI+ Y    E  EAL
Sbjct: 143 FDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEAL 202

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF +M   G   +A T+A++ S C+  G LE GK                         
Sbjct: 203 RLFRRMLSEGARPNAITIATMFSICAKTGDLETGKW------------------------ 238

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
                   A  L +E  + + I+   ++ +Y  C  I++A+  F  M  + +++W++MI 
Sbjct: 239 --------ARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIA 290

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G +QNG P E+L+LF  M     + ++ +L  V+SACA + S ELG Q+ + V    L  
Sbjct: 291 GYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPL 350

Query: 470 DQIISTSLVDFYCKCGFI 487
              + ++L+D Y KCG +
Sbjct: 351 TSYLGSALIDMYTKCGHV 368



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 218/479 (45%), Gaps = 99/479 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC    +   GKQ+H H + +G+L                                 
Sbjct: 91  VVKSCAILAASRQGKQVHCHAIVRGLLG-------------------------------- 118

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F   A+++ + K G  + ++++F+ MP K+    N LI+G++K+G++  AR LF+ M 
Sbjct: 119 DIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMV 178

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           RR + +WNSMI CY   G  +EA+RLF+ +   L E  + +A  +AT+   CA    LE 
Sbjct: 179 RRTSASWNSMIACYAHGGEYQEALRLFRRM---LSEGARPNAITIATMFSICAKTGDLET 235

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK   S I    L  + ++ ++L+ +Y KC   + A +  + M++ D    S +I+GYA 
Sbjct: 236 GKWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQ 294

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+ +                               E+L LF +M+      +  TL  V
Sbjct: 295 NGRPH-------------------------------ESLELFERMKATSCKPNEVTLVGV 323

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSAC+ LG  E G Q+  H     +     + SAL+D Y+K                   
Sbjct: 324 LSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTK------------------- 364

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +  A+ +F  M +K +I+WNSM+ GL+ NG   +A+ L+  M + 
Sbjct: 365 ------------CGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEE 412

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGFIK 488
           D++ ++ +  ++++AC +   ++ G   F  +  I   S Q+   + +VD  CK G ++
Sbjct: 413 DVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLR 471


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 200/400 (50%), Gaps = 11/400 (2%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q + +    LI+ ++       A  +   +P     +++S+I+   +     +++ +F  
Sbjct: 47  QNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSR 106

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           + S     L  D+ +L  +   CA+L+A + GKQIH    V+GLD D+ +  S+ ++Y +
Sbjct: 107 MFS---HGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMR 163

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSM 275
           CG    A +V + M + D    SAL+  YA  G + +  R+         + + V WN +
Sbjct: 164 CGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGI 223

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           +SG+  +    EA+++F K+   G   D  T++SVL +      L  G+ +HG+  K G+
Sbjct: 224 LSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGL 283

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
           + D  V SA++D Y K G       LF++ ++ +  + N  IT  S  G ++ A  +F  
Sbjct: 284 LKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFEL 343

Query: 396 MPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
              +++    +SW S+I G +QNG  IEAL+LF  M    ++ +  ++ S++ AC NI++
Sbjct: 344 FKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAA 403

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           L  G         + L  +  + ++L+D Y KCG I + +
Sbjct: 404 LGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQ 443



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 218/456 (47%), Gaps = 66/456 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L + C    +  VGKQ+H      G L+    +   +  MYMRCG   DA  +FD M
Sbjct: 119 LPNLFKVCAELSAFKVGKQIHCVSCVSG-LDMDAFVQGSMFHMYMRCGRMGDARKVFDRM 177

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  + +A++  + + G  E+ +++ + M            SG               
Sbjct: 178 SDKDVVTCSALLCAYARKGCLEEVVRILSEMES----------SGI-------------- 213

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                N ++WN ++  + R+G+ +EAV +F++++         D   +++V+ +  D   
Sbjct: 214 ---EANIVSWNGILSGFNRSGYHKEAVVMFQKIHH---LGFCPDQVTVSSVLPSVGDSEM 267

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+ IH +++  GL  D  + S+++++YGK G       + N  +  +    +A I+G
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327

Query: 248 YANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            +  G ++ A  +F+    +T + + V W S+I+G   N +D EAL LF +M+  GV  +
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T+ S+L AC ++  L HG+  HG A +V ++D+V V SAL+D Y+K            
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK------------ 435

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              CGRI  ++ +F  MP K+L+ WNS++ G S +G   E + +
Sbjct: 436 -------------------CGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSI 476

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           F ++ +  L+ D  S  S++SAC  +   + G + F
Sbjct: 477 FESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 131/264 (49%), Gaps = 4/264 (1%)

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           ++L    + D +  + LI+ Y+N    NDA  V     D +   ++S+I         T+
Sbjct: 40  RILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQ 99

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           ++ +F +M  +G++ D+  L ++   C+ L   + GKQ+H  +C  G+  D  V  ++  
Sbjct: 100 SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFH 159

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLIS 403
            Y + G   DA K+F  +   D +  + ++  Y+  G +E+   I   M +     +++S
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN ++ G +++G   EA+ +F  ++ L    D+ +++SV+ +  +   L +G  +   V 
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279

Query: 464 IIGLDSDQIISTSLVDFYCKCGFI 487
             GL  D+ + ++++D Y K G +
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHV 303



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 15/203 (7%)

Query: 55  GNPTDALLLFDEMP----RRNCFSWNAMIEG---FMKLGHKEKSLQLFNVMPQ--KNDFS 105
           G   +AL LF EM     + N  +  +M+        LGH  +S   F V      N   
Sbjct: 367 GKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHV 425

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            + LI  +AK G +  ++ +FN MP +N + WNS+++ +  +G A+E + +F+ L   + 
Sbjct: 426 GSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESL---MR 482

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFN 224
            RL+ D     +++ AC  +   + G +    +    G+       S +VNL G+ G   
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542

Query: 225 SANQVLNMMK-EPDDFCLSALIS 246
            A  ++  M  EPD     AL++
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLN 565



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 27/241 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    ++  G+  H   ++  +L++ + + + L+ MY +CG    + ++F+ M
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDN-VHVGSALIDMYAKCGRINLSQIVFNMM 449

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
           P +N   WN+++ GF   G  ++ + +F  + +   K DF S+  L+S   + G      
Sbjct: 450 PTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGW 509

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I      ++ M++   R G  +EA  L KE+        + D+ +   +
Sbjct: 510 KYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM------PFEPDSCVWGAL 563

Query: 179 IGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           + +C      DLA +   K  H      G     VL   L N+Y   G +   + + N M
Sbjct: 564 LNSCRLQNNVDLAEIAAEKLFHLEPENPG---TYVL---LSNIYAAKGMWTEVDSIRNKM 617

Query: 234 K 234
           +
Sbjct: 618 E 618


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 139/558 (24%), Positives = 256/558 (45%), Gaps = 96/558 (17%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILN----------STLP--------- 42
           D    + A LL+ C    S++  +Q+H   +  G+L+            LP         
Sbjct: 28  DVSPTHFASLLKECR---SVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKS 84

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS----------- 91
           +   ++  Y+ CG  +DAL + + +       WN ++   ++ G  +++           
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 92  -----------LQLFNVMP-----------------QKNDFSWNMLISGFAKAGELKTAR 123
                      L+    +P                 + N F  N L++ ++++G L+ A 
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDAS 204

Query: 124 TLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL---QCDAFILAT 177
            +F+++ R+   + I+WNS++  +V+    R A+ LF E+ + + E+    + D   +  
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVN 264

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           ++ ACA L AL   K+IHS+ + NG   D+ + ++L++ Y KCG    A  V N+M+  D
Sbjct: 265 ILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKD 324

Query: 238 DFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
               +A+++GY   GK   A  +F            + W+++I+GY       EAL  F 
Sbjct: 325 VVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQ 384

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M   G   ++ T+ S+LSAC+SLG L  G + H ++ K            LL   +  G
Sbjct: 385 QMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLK----------KCLLSLDNDFG 434

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGL 411
              D   L         ++ N +I +YS C   + A+ IF ++P   +++++W  MI G 
Sbjct: 435 GDGDGEDL---------VVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGY 485

Query: 412 SQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           +Q G   +AL LF  M      +  + ++++ ++ ACA++SSL +G+Q+ A VT      
Sbjct: 486 AQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYE 545

Query: 470 DQI--ISTSLVDFYCKCG 485
             +  ++  L+D Y KCG
Sbjct: 546 SSVYFVANCLIDMYSKCG 563



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 190/407 (46%), Gaps = 79/407 (19%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  NA+I+ + K G  + ++ +FNVM  K+  SWN +++G+ ++G+   A  LF +M 
Sbjct: 293 DAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMR 352

Query: 131 RRN----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           + N     I W+++I  Y + G+ +EA+  F+++   ++   + ++  + +++ ACA L 
Sbjct: 353 KENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM---ILYGSEPNSVTIISLLSACASLG 409

Query: 187 ALEYGKQIHSHILVNGL------------DFDSVLGSSLVNLYGKCGDFNSANQVLNMM- 233
           AL  G + H++ L   L              D V+ ++L+++Y KC  F +A  + N + 
Sbjct: 410 ALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIP 469

Query: 234 -KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
            +E +    + +I GYA  G  NDA ++F           + MIS               
Sbjct: 470 RRERNVVTWTVMIGGYAQYGDSNDALKLF-----------SEMIS--------------- 503

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
              +   V  +A T++ +L AC+ L  L  GKQ+H +  +                    
Sbjct: 504 ---KPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTR-------------------- 540

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                      E +     + N +I +YS CG ++ A+++F +MP ++ +SW SM+ G  
Sbjct: 541 ---------HHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            +G   EALD+F  M K     D  S   ++ AC++   ++ G   F
Sbjct: 592 MHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYF 638



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 34/253 (13%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + +++ Y  CG  +DA  V +R   + +V WN ++  +I       A+ +  +M R G  
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  TL   L AC  L     G   HG  C  G   +V V +AL+  YS+ G   DA  +
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F E+                +   I+D            +ISWNS++    +  +P  AL
Sbjct: 207 FDEI----------------TRKGIDD------------VISWNSIVAAHVKGSNPRTAL 238

Query: 422 DLFCNMNKL------DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
           DLF  M  +      + R D  S+ +++ ACA++ +L   +++ +     G  +D  +  
Sbjct: 239 DLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCN 298

Query: 476 SLVDFYCKCGFIK 488
           +L+D Y KCG +K
Sbjct: 299 ALIDTYAKCGSMK 311



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L +C    S+ +GKQ+H +  +     S++  +AN L+ MY +CG+   A  +FD MP+
Sbjct: 518 ILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPK 577

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTL 125
           RN  SW +M+ G+   G  +++L +F+ M +     +D S+ +L+   + +G +      
Sbjct: 578 RNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDY 637

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           F+ M     +  ++  +  V +  AR   RL K   +     ++  A I   ++ AC
Sbjct: 638 FDIMRSDYGVIASAQHYACVIDLLARSG-RLDKAWKTIQEMPMEPSAAIWVALLSAC 693


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 216/442 (48%), Gaps = 38/442 (8%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G    A+ +++  P ++     A+I G  + G  + +  LF  +P+    SWN LI+G+ 
Sbjct: 305 GRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYM 364

Query: 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN-SDLVERLQCDAF 173
           + G +  A+ LF+ MP RN I+W  MI  Y +NG + EA+ L +EL+ S ++  L     
Sbjct: 365 QNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSS--- 421

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            L ++  AC+++ ALE G Q+HS  +  G  F+S   ++L+ +YGKC +   A QV + M
Sbjct: 422 -LTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRM 480

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              D    ++ ++       +++AR  FD       V W ++IS Y    +  EA+  F 
Sbjct: 481 VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFK 540

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            M     L ++  L  +L  C SLG  + G+Q+H  A K+G+  ++IVA+AL        
Sbjct: 541 TMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANAL-------- 592

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                  I++Y  CG   D++ IF  M  + + +WN++I G +Q
Sbjct: 593 -----------------------ISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQ 628

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQI 472
           +G   EA+ ++ +M    +  ++ +   +++AC++   ++ G + F  ++   GL     
Sbjct: 629 HGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPE 688

Query: 473 ISTSLVDFYCKCGFIKMDEYYL 494
               +VD   + G ++  E ++
Sbjct: 689 HYACMVDLLGRTGDVQGAEQFI 710



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 231/501 (46%), Gaps = 64/501 (12%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y R G   +A  +FD M  RN  +WNAMI  +++ G    + +LF+ MP ++  SW
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW 161

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAI-----------------AWNSMIHCYV-RNG 148
           N +++G+  + ++  AR LF  MP RN +                 AW+  I C + R G
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD--IFCKMHREG 219

Query: 149 FARE------AVRLFKEL-NSDLVERLQCDA----FILATVIGAC--------------- 182
              +      A+   K L N D++E L+  A    F    VIG                 
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 183 ----------------ADLAALEYGKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFN 224
                             +AAL +G +I + I V   D    +   ++L+    +CG  +
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRID 339

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A  +   + EP     +ALI+GY   G +N+A+ +FD+    +++ W  MI+GY  N  
Sbjct: 340 DARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL L  ++ R+G+L   S+L S+  ACS++  LE G QVH  A KVG   +    +A
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNA 459

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  Y K      A ++FS +   D +  N+ +        +++A++ F  M ++  +SW
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSW 519

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            ++I   +      EA+  F  M       +   L  ++  C ++ + ++G+Q+      
Sbjct: 520 TTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIK 579

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
           +G+DS+ I++ +L+  Y KCG
Sbjct: 580 LGMDSELIVANALISMYFKCG 600



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 194/439 (44%), Gaps = 76/439 (17%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I    + G +  AR +F+ MPRR+ IAWNSMI  Y  NG    A  L+  ++      ++
Sbjct: 41  IRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG---NMR 97

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQ 228
             A +L+              G+ + +  + +G L+ ++V  +++++ Y + GD   A +
Sbjct: 98  TGAILLS---------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + + M   D    +++++GY +  +M DAR +F++  + + V W  MISGY       +A
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
             +F KM R G+L D S  AS LSA   LG L+  + +   A K G   DV++ +A+L+ 
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 349 YSKRGMPSD-ACKLFSELKVYDTILLNTMITVYS-------------------------- 381
           YS+     D A K F  +   +    +TMI   S                          
Sbjct: 269 YSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL 328

Query: 382 -----SCGRIEDA-------------------------------KHIFRTMPNKSLISWN 405
                 CGRI+DA                               K +F  MP ++ ISW 
Sbjct: 329 ITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWA 388

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
            MI G +QNG   EAL L   +++  +     SL S+  AC+NI +LE G QV +    +
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 466 GLDSDQIISTSLVDFYCKC 484
           G   +     +L+  Y KC
Sbjct: 449 GCQFNSFACNALITMYGKC 467



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 10/243 (4%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           SA I      G++ +AR VFD       + WNSMIS Y  N     A  L+  +      
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGG--- 94

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-SALLDTYSKRGMPSDACK 360
            +  T A +LS    LG +   ++V       G+++   VA +A++  Y + G  + A +
Sbjct: 95  -NMRTGAILLSGYGRLGRVLEARRVFD-----GMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF  +   D    N+M+T Y    ++ DA+++F  MP ++L+SW  MI G  +  +  +A
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
            D+FC M++  L  D+ + AS +SA   + +L++ E +       G + D +I T++++ 
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 481 YCK 483
           Y +
Sbjct: 269 YSR 271



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 141/344 (40%), Gaps = 76/344 (22%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N F+ NA+I  + K  + E + Q+F+ M  K+  SWN  ++   +   L  AR  F++M 
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNML 512

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++W ++I  Y     + EA+  FK +     E    ++ IL  ++G C  L A + 
Sbjct: 513 SRDDVSWTTIISAYAHAEQSNEAMGAFKTM---FCEHELPNSPILTILLGVCGSLGASKI 569

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+QIH+  +  G+D + ++ ++L+++Y KCG                             
Sbjct: 570 GQQIHTVAIKLGMDSELIVANALISMYFKCG----------------------------- 600

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           C    D+RR+FD   +     WN++I+GY  +    EA+ ++  M               
Sbjct: 601 CA---DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHME-------------- 643

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYD 369
                                  GV+ + +    LL+  S  G+  +  K F  + + Y 
Sbjct: 644 ---------------------SAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 370 TILLNT----MITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMI 408
              L      M+ +    G ++ A+     MP     + W++++
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALL 726



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 109/241 (45%), Gaps = 26/241 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL  C +  +  +G+Q+H   +K G ++S L +AN L+ MY +CG   D+  +FD M
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLG-MDSELIVANALISMYFKCG-CADSRRIFDLM 611

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             R+ F+WN +I G+ + G   ++++++  M       N+ ++  L++  + AG +    
Sbjct: 612 EERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGW 671

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M +   +      +  M+    R G  + A +   ++       ++ D  I + +
Sbjct: 672 KFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMP------IEPDTVIWSAL 725

Query: 179 IGACADLAALEYGKQIHSHIL----VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +GAC      E GK+    +      N  ++       L N+Y   G +    +V  +MK
Sbjct: 726 LGACKIHKNAEIGKRAAEKLFRIEPSNAGNY-----VMLSNIYSSLGMWGEVAEVRKIMK 780

Query: 235 E 235
           +
Sbjct: 781 Q 781


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 148/572 (25%), Positives = 258/572 (45%), Gaps = 144/572 (25%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H      G  +S L +AN L+ +Y + G    A  +F+ +  ++  +W AMI G  +
Sbjct: 180 KQVHSRTFYYGFDSSPL-VANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQ 238

Query: 85  LGHKEKSLQLF------NVMPQKNDFS------------------------W-------- 106
            G +E+++ LF       + P     S                        W        
Sbjct: 239 NGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYV 298

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N L++ ++++ +L +A  +F+ M  R+ +++NS+I   V+ GF+  A+ LF ++  D  
Sbjct: 299 CNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC- 357

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L+ D   +A+++ ACA + AL  G Q+HSH +  G+  D +L  SL++LY K      
Sbjct: 358 --LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSK------ 409

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    C  +  A + F  T   + V+WN M+  Y   +  
Sbjct: 410 -------------------------CADVETAHKFFLTTETENIVLWNVMLVAYGQLDNL 444

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           +++  +F +M+  G++ +  T  S+L  C+SLG L  G+Q+H H  K G   +V V S L
Sbjct: 445 SDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVL 504

Query: 346 LDTYSKRG-------------------------------MPSDACKLFSELKV----YDT 370
           +D Y+K G                               M S+A +LF E++     +D 
Sbjct: 505 IDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564

Query: 371 I-----------------------------------LLNTMITVYSSCGRIEDAKHIFRT 395
           I                                   + N +I++Y+ CGRI++A   F  
Sbjct: 565 IGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEK 624

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           + +K+ ISWNS++ GL+Q+G   EAL +F  M + +  ++ F+  S ISA A++++++ G
Sbjct: 625 IGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG 684

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +Q+ + V   G DS++ +S SL+  Y K G I
Sbjct: 685 QQIHSMVLKTGYDSEREVSNSLISLYAKSGSI 716



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 221/518 (42%), Gaps = 112/518 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C T  S+    +LH    K G     L I + L+  Y R G+   A+ +FDE   R
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI-DSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF---------NVMPQKNDFSW--------------- 106
           + FSWN MI  F+    ++ + Q+F          + P    F+                
Sbjct: 123 SVFSWNKMIHVFVA---QKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYV 179

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N+LI  ++K G +++A+ +FN +  ++ + W +MI    +N
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ LF ++++     +    ++L++V+ A   +   E G+Q+H  ++  G   ++
Sbjct: 240 GLEEEAILLFCDMHAS---EIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + + LV LY +     SA ++ + M   D    ++LISG    G         DR    
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQG-------FSDR---- 345

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                               AL LF KM+R+ +  D  T+AS+LSAC+S+G L  G Q+H
Sbjct: 346 --------------------ALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            HA K G+  D+I+  +LLD YSK      A K F   +  + +L N M+  Y     + 
Sbjct: 386 SHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLS 445

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           D+  IFR M  + +I                                ++F+  S++  C 
Sbjct: 446 DSFEIFRQMQMEGMIP-------------------------------NQFTYPSILRTCT 474

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ +L LGEQ+   V   G   +  + + L+D Y K G
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG 512



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 213/491 (43%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +  ++H G QLH H +K G +++ + +   LL +Y +C +   A   F   
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAG-MSADIILEGSLLDLYSKCADVETAHKFFLTT 423

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
              N   WN M+  + +L +   S ++F  M  +    N F++                 
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGE 483

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             ++LI  +AK G+L  A  +   +P  + ++W +MI  YV++ 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF+E+       +Q D    A+ I ACA + AL  G+QIH+     G   D  
Sbjct: 544 MFSEALQLFEEME---YRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS 600

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L++LY                               A CG++ +A   F++  D +
Sbjct: 601 INNALISLY-------------------------------ARCGRIQEAYLAFEKIGDKN 629

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ WNS++SG   +    EAL +F +M R     +  T  S +SA +SL  ++ G+Q+H 
Sbjct: 630 NISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHS 689

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V+++L+  Y+K G  SDA + F+++   + I  N MIT          
Sbjct: 690 MVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT---------- 739

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                G SQ+G  +EAL LF  M    +  +  +   V+SAC++
Sbjct: 740 ---------------------GYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSH 778

Query: 449 ISSLELGEQVF 459
           I  ++ G   F
Sbjct: 779 IGLVKEGLDYF 789



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 178/389 (45%), Gaps = 68/389 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  + + G+   A  +F++   R+  +WN MIH +V      +   LF+ +   L E +
Sbjct: 99  LVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM---LAEGI 155

Query: 169 QCDAFILATVIGAC--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + +  A V+ AC   D+A   Y KQ+HS     G D   ++ + L++LY K G   SA
Sbjct: 156 TPNGYTFAGVLKACVGGDIA-FNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +V N                   C  M D             V W +MISG   N  + 
Sbjct: 215 KKVFN-------------------CICMKDI------------VTWVAMISGLSQNGLEE 243

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EA+LLF  M  + +      L+SVLSA + +   E G+Q+H   C V             
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH---CLV------------- 287

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
               K G  S+            T + N ++ +YS   ++  A+ IF TM ++  +S+NS
Sbjct: 288 ---IKWGFHSE------------TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           +I GL Q G    AL+LF  M +  L+ D  ++AS++SACA++ +L  G Q+ +     G
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 467 LDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +D I+  SL+D Y KC  ++    + +
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFL 421



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 20/191 (10%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +I  G+Q+H   LK G  +S   ++N L+ +Y + G+ +DA   F++M  RN  SWNAMI
Sbjct: 680 NIKQGQQIHSMVLKTG-YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMI 738

Query: 80  EGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
            G+ + G   ++L+LF       +MP  N  ++  ++S  +  G +K     F  M + +
Sbjct: 739 TGYSQHGCGMEALRLFEEMKVCGIMP--NHVTFVGVLSACSHIGLVKEGLDYFESMFKIH 796

Query: 134 AIAWNSMIH-CYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
            +   S  + C V    R G    A+   KE+       +  DA I  T++ AC     +
Sbjct: 797 DLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMP------IPADAMIWRTLLSACVIHKNI 850

Query: 189 EYGKQIHSHIL 199
           E G++   H+L
Sbjct: 851 EIGERAAHHLL 861



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 32/204 (15%)

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           ++ + L + M   GV  +      +L  C + G L    ++H    K G   + ++  +L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y + G    A K+F E                                 N+S+ SWN
Sbjct: 100 VDNYFRHGDQHGAVKVFDE-------------------------------NSNRSVFSWN 128

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTI 464
            MI       S  +   LF  M    +  + ++ A V+ AC     +    +QV +R   
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFY 188

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
            G DS  +++  L+D Y K G+I+
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIE 212


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 148/572 (25%), Positives = 258/572 (45%), Gaps = 144/572 (25%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H      G  +S L +AN L+ +Y + G    A  +F+ +  ++  +W AMI G  +
Sbjct: 180 KQVHSRTFYYGFDSSPL-VANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQ 238

Query: 85  LGHKEKSLQLF------NVMPQKNDFS------------------------W-------- 106
            G +E+++ LF       + P     S                        W        
Sbjct: 239 NGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYV 298

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N L++ ++++ +L +A  +F+ M  R+ +++NS+I   V+ GF+  A+ LF ++  D  
Sbjct: 299 CNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC- 357

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L+ D   +A+++ ACA + AL  G Q+HSH +  G+  D +L  SL++LY K      
Sbjct: 358 --LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSK------ 409

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    C  +  A + F  T   + V+WN M+  Y   +  
Sbjct: 410 -------------------------CADVETAHKFFLXTETENIVLWNVMLVAYGQLDNL 444

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           +++  +F +M+  G++ +  T  S+L  C+SLG L  G+Q+H H  K G   +V V S L
Sbjct: 445 SDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVL 504

Query: 346 LDTYSKRG-------------------------------MPSDACKLFSELKV----YDT 370
           +D Y+K G                               M S+A +LF E++     +D 
Sbjct: 505 IDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564

Query: 371 I-----------------------------------LLNTMITVYSSCGRIEDAKHIFRT 395
           I                                   + N +I++Y+ CGRI++A   F  
Sbjct: 565 IGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEK 624

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           + +K+ ISWNS++ GL+Q+G   EAL +F  M + +  ++ F+  S ISA A++++++ G
Sbjct: 625 IGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQG 684

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +Q+ + V   G DS++ +S SL+  Y K G I
Sbjct: 685 QQIHSMVLKTGYDSEREVSNSLISLYAKSGSI 716



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 132/518 (25%), Positives = 221/518 (42%), Gaps = 112/518 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+ C T  S+    +LH    K G     L I + L+  Y R G+   A+ +FDE   R
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLI-DSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF---------NVMPQKNDFSW--------------- 106
           + FSWN MI  F+    ++ + Q+F          + P    F+                
Sbjct: 123 SVFSWNKMIHVFVA---QKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYV 179

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N+LI  ++K G +++A+ +FN +  ++ + W +MI    +N
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ LF ++++     +    ++L++V+ A   +   E G+Q+H  ++  G   ++
Sbjct: 240 GLEEEAILLFCDMHAS---EIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSET 296

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + + LV LY +     SA ++ + M   D    ++LISG    G         DR    
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQG-------FSDR---- 345

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                               AL LF KM+R+ +  D  T+AS+LSAC+S+G L  G Q+H
Sbjct: 346 --------------------ALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            HA K G+  D+I+  +LLD YSK      A K F   +  + +L N M+  Y     + 
Sbjct: 386 SHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLS 445

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           D+  IFR M  + +I                                ++F+  S++  C 
Sbjct: 446 DSFEIFRQMQMEGMIP-------------------------------NQFTYPSILRTCT 474

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ +L LGEQ+   V   G   +  + + L+D Y K G
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYG 512



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 212/491 (43%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +  ++H G QLH H +K G +++ + +   LL +Y +C +   A   F   
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAG-MSADIILEGSLLDLYSKCADVETAHKFFLXT 423

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
              N   WN M+  + +L +   S ++F  M  +    N F++                 
Sbjct: 424 ETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGE 483

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             ++LI  +AK G+L  A  +   +P  + ++W +MI  YV++ 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF+E+       +Q D    A+ I ACA + AL  G+QIH+     G   D  
Sbjct: 544 MFSEALQLFEEME---YRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS 600

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +                               ALIS YA CG++ +A   F++  D +
Sbjct: 601 INN-------------------------------ALISLYARCGRIQEAYLAFEKIGDKN 629

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ WNS++SG   +    EAL +F +M R     +  T  S +SA +SL  ++ G+Q+H 
Sbjct: 630 NISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHS 689

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V+++L+  Y+K G  SDA + F+++   + I  N MIT          
Sbjct: 690 MVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT---------- 739

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                G SQ+G  +EAL LF  M    +  +  +   V+SAC++
Sbjct: 740 ---------------------GYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSH 778

Query: 449 ISSLELGEQVF 459
           I  ++ G   F
Sbjct: 779 IGLVKEGLDYF 789



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 178/389 (45%), Gaps = 68/389 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  + + G+   A  +F++   R+  +WN MIH +V      +   LF+ +   L E +
Sbjct: 99  LVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM---LAEGI 155

Query: 169 QCDAFILATVIGAC--ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + +  A V+ AC   D+A   Y KQ+HS     G D   ++ + L++LY K G   SA
Sbjct: 156 TPNGYTFAGVLKACVGGDIA-FNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESA 214

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +V N                   C  M D             V W +MISG   N  + 
Sbjct: 215 KKVFN-------------------CICMKDI------------VTWVAMISGLSQNGLEE 243

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EA+LLF  M  + +      L+SVLSA + +   E G+Q+H   C V             
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH---CLV------------- 287

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
               K G  S+            T + N ++ +YS   ++  A+ IF TM ++  +S+NS
Sbjct: 288 ---IKWGFHSE------------TYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNS 332

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           +I GL Q G    AL+LF  M +  L+ D  ++AS++SACA++ +L  G Q+ +     G
Sbjct: 333 LISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAG 392

Query: 467 LDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           + +D I+  SL+D Y KC  ++    + +
Sbjct: 393 MSADIILEGSLLDLYSKCADVETAHKFFL 421



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 20/191 (10%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           +I  G+Q+H   LK G  +S   ++N L+ +Y + G+ +DA   F++M  RN  SWNAMI
Sbjct: 680 NIKQGQQIHSMVLKTG-YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMI 738

Query: 80  EGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
            G+ + G   ++L+LF       +MP  N  ++  ++S  +  G +K     F  M + +
Sbjct: 739 TGYSQHGCGMEALRLFEEMKVCGIMP--NHVTFVGVLSACSHIGLVKEGLDYFESMFKIH 796

Query: 134 AIAWNSMIH-CYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
            +   S  + C V    R G    A+   KE+       +  DA I  T++ AC     +
Sbjct: 797 DLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMP------IPADAMIWRTLLSACVIHKNI 850

Query: 189 EYGKQIHSHIL 199
           E G++   H+L
Sbjct: 851 EIGERAAHHLL 861



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 32/204 (15%)

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           ++ + L + M   GV  +      +L  C + G L    ++H    K G   + ++  +L
Sbjct: 40  SKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSL 99

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y + G    A K+F E                                 N+S+ SWN
Sbjct: 100 VDNYFRHGDQHGAVKVFDE-------------------------------NSNRSVFSWN 128

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTI 464
            MI       S  +   LF  M    +  + ++ A V+ AC     +    +QV +R   
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFY 188

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
            G DS  +++  L+D Y K G+I+
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIE 212


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 152/525 (28%), Positives = 237/525 (45%), Gaps = 115/525 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L++C+   +   G+++H   +K G  N    +   L+ MY +CG    +  +FDE 
Sbjct: 106 FSHVLKACSESRNFDEGRKVHCQIVKFG--NPDSFVFTGLVDMYAKCGEIECSRSVFDEN 163

Query: 68  PRRNCFSWNAMIEGFM-----------------------------------KLG--HKEK 90
             RN FSW++MI G++                                   KLG  H+ K
Sbjct: 164 LDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGK 223

Query: 91  SLQ--LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
            L   L     +   +    L+  +AK G ++ AR++F+++   + ++W +MI  Y +NG
Sbjct: 224 WLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNG 283

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF  L  + V  L  D  I A+V  +C+ L  L  G+ IH      GL     
Sbjct: 284 CPEEALKLF--LQKEQVAVLPNDVTI-ASVFSSCSQLLNLNLGRSIH------GLSIK-- 332

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LGS                         D    ++L+  YA C    DAR VF+  +D  
Sbjct: 333 LGSR------------------------DPIVTNSLVDFYAKCQMNRDARYVFETISDRD 368

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNS+IS +  N    EAL LFH+MR   VL DA TL SVLSAC+SL  L+ G   H 
Sbjct: 369 VVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHA 428

Query: 329 HACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           +A K G++  +V V +ALL                               T Y+ CG  E
Sbjct: 429 YAVKRGLLSSNVYVGTALL-------------------------------TFYAKCGDAE 457

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A+ IF  M  KS ++W++MI G    G+   +L +F +M K +L+ ++    S++SAC+
Sbjct: 458 SARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACS 517

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTS----LVDFYCKCGFIK 488
           +   +  G ++F   T+I  D + + ST     +VD   + G +K
Sbjct: 518 HTGMIGEGWRLF---TMICQDYNLVPSTKHYTCMVDLLARAGRLK 559



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 172/376 (45%), Gaps = 67/376 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+S +   G L  AR +F+ +P  + ++W  +I  Y  N   R+ V  +  +   L E  
Sbjct: 43  LVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKE-- 100

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
            CD  + + V+ AC++    + G+++H  I+  G                          
Sbjct: 101 -CDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-------------------------- 133

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                  PD F  + L+  YA CG++  +R VFD   D +   W+SMI+GY+ NN   + 
Sbjct: 134 ------NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDG 187

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L+LF++MR   +  +  TL  ++ AC  LG L  GK +HG+  K G+     + +ALLD 
Sbjct: 188 LVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDL 247

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K G+  DA  +F EL   D +    MI                               
Sbjct: 248 YAKCGVVRDARSVFDELHGIDIVSWTAMI------------------------------- 276

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           VG +QNG P EAL LF    ++ +  +  ++ASV S+C+ + +L LG  +      +G  
Sbjct: 277 VGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-S 335

Query: 469 SDQIISTSLVDFYCKC 484
            D I++ SLVDFY KC
Sbjct: 336 RDPIVTNSLVDFYAKC 351



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 177/406 (43%), Gaps = 75/406 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  L+ +C    ++H GK LH + +K GI L S L  A  LL +Y +CG   DA  +FDE
Sbjct: 206 LGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTA--LLDLYAKCGVVRDARSVFDE 263

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMP--------------------- 99
           +   +  SW AMI G+ + G  E++L+LF       V+P                     
Sbjct: 264 LHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLG 323

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       ++    N L+  +AK    + AR +F  +  R+ +AWNS+I  + +NG
Sbjct: 324 RSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNG 383

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A EA+ LF ++    V     DA  L +V+ ACA L AL+ G   H++ +  GL   +V
Sbjct: 384 SAYEALELFHQMRMGSVLP---DAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNV 440

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                         +  +AL++ YA CG    AR +FD     S
Sbjct: 441 ------------------------------YVGTALLTFYAKCGDAESARVIFDGMDQKS 470

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V W++MISGY        +L +F  M +  +  +     S+LSACS  G +  G ++  
Sbjct: 471 TVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFT 530

Query: 329 HACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
             C+   ++      + ++D  ++ G   +A     ++ V   + L
Sbjct: 531 MICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSL 576



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 116/249 (46%), Gaps = 32/249 (12%)

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
           C + L+S Y + G+++ AR VFD       + W  +I  Y  N+E  + +  +++MR   
Sbjct: 39  CSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCL 98

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              D    + VL ACS     + G++VH   C++                 K G P    
Sbjct: 99  KECDNVVFSHVLKACSESRNFDEGRKVH---CQI----------------VKFGNP---- 135

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                    D+ +   ++ +Y+ CG IE ++ +F    ++++ SW+SMI G  QN    +
Sbjct: 136 ---------DSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQD 186

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
            L LF  M +  +  ++ +L  ++ AC  + +L  G+ +   +   G++    + T+L+D
Sbjct: 187 GLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLD 246

Query: 480 FYCKCGFIK 488
            Y KCG ++
Sbjct: 247 LYAKCGVVR 255



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 30/244 (12%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C + +++ VG   H + +K+G+L+S + +   LL  Y +CG+   A ++FD M
Sbjct: 407 LVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGM 466

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
            +++  +W+AMI G+   G+   SL +F  M     + N+  +  ++S  +  G +    
Sbjct: 467 DQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGW 526

Query: 124 TLF-------NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
            LF       N +P      +  M+    R G  +EA+   +++       +Q D  +  
Sbjct: 527 RLFTMICQDYNLVPSTK--HYTCMVDLLARAGRLKEALDFIQKMP------VQPDVSLFG 578

Query: 177 TVIGACA-----DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
             +  C      DL  L   + +  H        D+     + NLY     ++   QV  
Sbjct: 579 AFLHGCGLHSRFDLGELAIKRMLELH------PGDACYYVLMCNLYASDARWSKVKQVRE 632

Query: 232 MMKE 235
           +MK+
Sbjct: 633 LMKQ 636


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 209/433 (48%), Gaps = 74/433 (17%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAK---------- 115
           N FSWN  I GF+   +  +++ L+  + Q      +++++ +L    A+          
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 116 -------------------------AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                                     G+L  AR +F+    R+ ++WNSMI+ YVR G+A
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 189

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+  ++E+    VE ++ D   +  V+ +CA L  L+ G++ H +I  NGL     L 
Sbjct: 190 YEALNFYREMK---VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 246

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+++Y KCG+  SA ++ + M        + ++ GYA  G ++ A ++FD   D   V
Sbjct: 247 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVV 306

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN+MI GY+  N   EAL LF++M+   +  D  T+ S LSACS LG L+ G  +H + 
Sbjct: 307 PWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI 366

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K  +  +V + +AL+D Y+K G                               +I  A 
Sbjct: 367 EKHELSLNVALGTALIDMYAKCG-------------------------------KITKAI 395

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F+ +P ++ ++W ++I GL+ +G+   A+  F  M    +  D+ +   ++SAC +  
Sbjct: 396 QVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGG 455

Query: 451 SLELGEQVFARVT 463
            +E G + F++++
Sbjct: 456 LVEEGRKYFSQMS 468



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 203/425 (47%), Gaps = 53/425 (12%)

Query: 78  MIEGFMKLGHKEKSL-QLFNVMPQ-------KNDFSWNMLIS--GFAKAGELKTARTLFN 127
           +I  F+ L  K KS+ QL  +  Q       ++ F+ + LI+    ++  +L     +  
Sbjct: 5   LINPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILF 64

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-----FILATVIGAC 182
           +    N  +WN  I  ++ +   REAV L+K +       LQCD      +    +  AC
Sbjct: 65  NTRNPNTFSWNVAIRGFLDSENPREAVVLYKRV-------LQCDGTKPDNYTYPLLFKAC 117

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           A L+ +  G +I  H+L   L FDS                             D F  +
Sbjct: 118 ARLSLIRMGSEILGHVL--HLGFDS-----------------------------DIFVSN 146

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           A+I    +CG ++ AR++FD++     V WNSMI+GY+      EAL  + +M+  G+  
Sbjct: 147 AVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKP 206

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D  T+  V+S+C+ L  L+ G++ H +  + G+   V +A+AL+D Y K G    A KLF
Sbjct: 207 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 266

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +     +   TM+  Y+  G ++ A  +F  MP+K ++ WN+MI G        EAL 
Sbjct: 267 DSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALA 326

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           LF  M  +++  D+ ++ S +SAC+ + +L++G  +   +    L  +  + T+L+D Y 
Sbjct: 327 LFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYA 386

Query: 483 KCGFI 487
           KCG I
Sbjct: 387 KCGKI 391



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 154/358 (43%), Gaps = 67/358 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ SC     + +G++ H +  + G L  T+P+AN L+ MYM+CGN   A  LFD M  +
Sbjct: 214 VVSSCAQLEDLDLGRESHCYIEENG-LKLTVPLANALMDMYMKCGNLESARKLFDSMTNK 272

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
              SW  M+ G+ + G  + + +LF+ MP K+   WN +I G+  A   K A  LFN+M 
Sbjct: 273 TMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQ 332

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             N                          +N D V  + C        + AC+ L AL+ 
Sbjct: 333 AMN--------------------------INPDEVTMVSC--------LSACSQLGALDV 358

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  IH +I  + L  +  LG++L+++Y KCG    A QV   +   +    +A+ISG A 
Sbjct: 359 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLAL 418

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G  +                                A+  F +M  N V+ D  T   +
Sbjct: 419 HGNAHG-------------------------------AIAYFSEMIDNSVMPDEVTFLGL 447

Query: 311 LSACSSLGFLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           LSAC   G +E G++     + K  +   +   S ++D   + G+  +A +L   + +
Sbjct: 448 LSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPI 505


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/488 (27%), Positives = 230/488 (47%), Gaps = 101/488 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           + T + Y + L++ C    S+   K +H   +K G  N+   + NR L +Y + G   D+
Sbjct: 33  LATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVG-FNTHTFLGNRCLDLYSQLGTGNDS 91

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
           L +F++                               +  KN  SWN+ +  F + GEL+
Sbjct: 92  LRVFED-------------------------------IIDKNLISWNIFLKAFVRFGELE 120

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            AR +F++MP+R+ ++WN+MI  YV  G   +A R F E+       ++   F  +T++ 
Sbjct: 121 RARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQK---AGIRPSGFTYSTLLS 177

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDS-VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
             +       GKQIH+ ++ NG+D  + V+G+SL+ +YGK G  + A  V   M+E D  
Sbjct: 178 FVSSACR---GKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELD-- 232

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                                    T  +S++W+   SGY        AL  F  MR  G
Sbjct: 233 ------------------------ITSWNSLIWSCGKSGY-----QNLALRQFVLMRSVG 263

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              D  T+++V++ CS+L  LE G+Q+     +VG + + IV+SA +D +SK     D+ 
Sbjct: 264 YSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSV 323

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           ++F E+  +D++L N MI+ Y                      +W+    G  +N     
Sbjct: 324 RVFEEIYQWDSVLCNAMISSY----------------------AWH----GFGEN----- 352

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL LF    + +LR  +F+L+ V+SA + +  ++ G Q+ + V   GL+SD I+++SLV+
Sbjct: 353 ALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVE 412

Query: 480 FYCKCGFI 487
            Y K G I
Sbjct: 413 MYAKFGLI 420



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 20/224 (8%)

Query: 285 DTEALLLFHKMRRNGVLEDA--------STLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           + + + L H +R    L+ A        S  ++++  C  L  L++ K VH    KVG  
Sbjct: 10  EEKLVYLCHSIRMQPFLKKAHGPLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFN 69

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
               + +  LD YS+ G  +D+ ++F ++   + I  N  +  +   G +E A+ +F  M
Sbjct: 70  THTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEM 129

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P + ++SWN+MI G    G   +A   F  M K  +R   F+ ++++S    +SS   G+
Sbjct: 130 PKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSF---VSSACRGK 186

Query: 457 QVFARVTIIGLD-SDQIISTSLVDFYCKCG--------FIKMDE 491
           Q+ A +   G+D S+ ++  SL+  Y K G        FI M+E
Sbjct: 187 QIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEE 230


>gi|302801784|ref|XP_002982648.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
 gi|300149747|gb|EFJ16401.1| hypothetical protein SELMODRAFT_51938 [Selaginella moellendorffii]
          Length = 481

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 167/313 (53%), Gaps = 9/313 (2%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C D  ALE G+++H  I  NG + ++ LG+ LV +Y KCG +  A Q    ++  + F  
Sbjct: 5   CRDRQALEEGRRVHEQIRKNGFEGETFLGNLLVEMYAKCGSWEDARQAFEKIEHKNAFSF 64

Query: 242 --------SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                   +A+++ Y   G + +A +VFDR +  + + WN+++  Y       E L L  
Sbjct: 65  GTNQPVLGTAIVTMYGKSGNLVEASQVFDRLSSRNIITWNTLMGAYAQYGHPDEVLRLQK 124

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M   GV ++  T  S+L ACS L  L  G+ +H      G + D ++ SA+++ Y+K  
Sbjct: 125 RMELEGVKQNRVTYLSLLDACSELESLTDGQALHARITATGYVGDAVLDSAVVNMYTKCK 184

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGR-IEDAKHIFRTMPNKSLISWNSMIVGLS 412
               A ++F  +++   +   T+I+ Y+  G+ +E+A+ +F  M  +++++WN+++    
Sbjct: 185 SLERARRVFDRMQLKTEVTWTTLISAYAQQGQDLENAREVFDRMTTRTVVTWNTLLTAYG 244

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q+G   EA+ L+  M    +  D+ +  +++ AC ++ SL  G  V  R+   GL++  +
Sbjct: 245 QHGHSEEAIRLYQRMEPDGVEPDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGLENGAL 304

Query: 473 ISTSLVDFYCKCG 485
           +ST+LV  Y KCG
Sbjct: 305 VSTALVSMYGKCG 317



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 224/494 (45%), Gaps = 76/494 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L++ C    ++  G+++H    K G    T  + N L++MY +CG               
Sbjct: 1   LVRRCRDRQALEEGRRVHEQIRKNGFEGETF-LGNLLVEMYAKCG--------------- 44

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM--------LISGFAKAGELKTA 122
              SW    + F K+ HK             N FS+          +++ + K+G L  A
Sbjct: 45  ---SWEDARQAFEKIEHK-------------NAFSFGTNQPVLGTAIVTMYGKSGNLVEA 88

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             +F+ +  RN I WN+++  Y + G   E +RL K +    +E ++ +     +++ AC
Sbjct: 89  SQVFDRLSSRNIITWNTLMGAYAQYGHPDEVLRLQKRME---LEGVKQNRVTYLSLLDAC 145

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           ++L +L  G+ +H+ I   G   D+VL S++VN+Y KC     A +V + M+   +   +
Sbjct: 146 SELESLTDGQALHARITATGYVGDAVLDSAVVNMYTKCKSLERARRVFDRMQLKTEVTWT 205

Query: 243 ALISGYANCGK-MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
            LIS YA  G+ + +AR VFDR T  + V WN++++ Y  +    EA+ L+ +M  +GV 
Sbjct: 206 TLISAYAQQGQDLENAREVFDRMTTRTVVTWNTLLTAYGQHGHSEEAIRLYQRMEPDGVE 265

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  T  +++ AC  +  L  G+ VH    + G+ +  +V++AL+  Y K G   +A K+
Sbjct: 266 PDEITYVTIVGACGDMQSLAEGRPVHDRIVRAGLENGALVSTALVSMYGKCGSLDEARKI 325

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F    + + +  N MI  Y                               +QNG   + L
Sbjct: 326 FDGSDLSNLVSWNAMIVAY-------------------------------AQNGEGKQGL 354

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDF 480
           +L+  MN   +  +  +   V+ ACA+   L E  +Q  +  T  G++ +    + + D 
Sbjct: 355 ELYELMNLGGVEPNGVTYTGVLFACAHAGLLDEAWKQFVSLKTDRGIEWEDEHFSCMTDM 414

Query: 481 YCKCGFIKMDEYYL 494
             + G ++  E +L
Sbjct: 415 LGRLGRLEEAEEFL 428



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 161/366 (43%), Gaps = 73/366 (19%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ YL+ LL +C+   S+  G+ LH      G +   + + + ++ MY +C +       
Sbjct: 135 RVTYLS-LLDACSELESLTDGQALHARITATGYVGDAV-LDSAVVNMYTKCKSL------ 186

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE-LKTA 122
                                    E++ ++F+ M  K + +W  LIS +A+ G+ L+ A
Sbjct: 187 -------------------------ERARRVFDRMQLKTEVTWTTLISAYAQQGQDLENA 221

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           R +F+ M  R  + WN+++  Y ++G + EA+RL++ +  D VE    D     T++GAC
Sbjct: 222 REVFDRMTTRTVVTWNTLLTAYGQHGHSEEAIRLYQRMEPDGVE---PDEITYVTIVGAC 278

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
            D+ +L  G+ +H  I+  GL+  +++ ++LV++YGKCG  + A ++ +     +    +
Sbjct: 279 GDMQSLAEGRPVHDRIVRAGLENGALVSTALVSMYGKCGSLDEARKIFDGSDLSNLVSWN 338

Query: 243 ALISGYANCGKMNDARRVFD----------RTTDTSSVM-----------WNSMISGYIS 281
           A+I  YA  G+      +++            T T  +            W   +S    
Sbjct: 339 AMIVAYAQNGEGKQGLELYELMNLGGVEPNGVTYTGVLFACAHAGLLDEAWKQFVSLKTD 398

Query: 282 NN---EDTEALLLFHKMRRNGVLEDASTLA------------SVLSACSSLGFLEHGKQV 326
                ED     +   + R G LE+A                S+L++C   G LE GK+V
Sbjct: 399 RGIEWEDEHFSCMTDMLGRLGRLEEAEEFLKRFPQAGGVPWLSLLNSCQMHGDLERGKRV 458

Query: 327 HGHACK 332
              A K
Sbjct: 459 SQEAMK 464


>gi|302143464|emb|CBI22025.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 214/485 (44%), Gaps = 98/485 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LLQSC + +S+ +GKQLH   +  G  +    I+N LL +Y +CG    A+      
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKF-ISNHLLNLYSKCGQLDTAI------ 107

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                     LF VMP+KN  S N+LI+G+ ++G+  TAR +F+
Sbjct: 108 -------------------------TLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFD 142

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +MP RN   WN+M+   ++  F  E + LF  +N         D F L +V+  CA L A
Sbjct: 143 EMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNE---LGFLPDEFALGSVLRGCAGLRA 199

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q+H ++   G +F+ V+ SSL ++Y KC                           
Sbjct: 200 LVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKC--------------------------- 232

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
               G + +  R+       + V WN++I+G   N    E L  ++ M+  G   D  T 
Sbjct: 233 ----GSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SV+S+CS L  L  G+Q+H    K G    +IV+                         
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGA--SLIVS------------------------- 321

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
               +++++I++YS CG +E +  +F    N  ++ W+SMI     +G  +EA+DLF  M
Sbjct: 322 ----VISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQM 377

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGF 486
            +  L  +  +  S++ AC++    E G + F   V   G+       T +VD   + G 
Sbjct: 378 EQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGS 437

Query: 487 IKMDE 491
           ++  E
Sbjct: 438 VEEAE 442



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 157/312 (50%), Gaps = 31/312 (9%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           + + ++ +C    +L  GKQ+HS I+ +G   D  + + L+NLY KCG  ++A  +  +M
Sbjct: 54  LFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVM 113

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              +    + LI+GY   G    AR++FD   + +   WN+M++G I    + E L LF 
Sbjct: 114 PRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFS 173

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M   G L D   L SVL  C+ L  L  G+QVHG+  K G   +++V S+L   Y K  
Sbjct: 174 RMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMK-- 231

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        CG + + + + R MP++++++WN++I G +Q
Sbjct: 232 -----------------------------CGSLGEGERLIRAMPSQNVVAWNTLIAGRAQ 262

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG P E LD +  M     R DK +  SVIS+C+ +++L  G+Q+ A V   G      +
Sbjct: 263 NGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSV 322

Query: 474 STSLVDFYCKCG 485
            +SL+  Y +CG
Sbjct: 323 ISSLISMYSRCG 334



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  + S  + +L +C S   L  GKQ+H      G   D  +++ LL+ YSK G    A 
Sbjct: 48  IWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAI 107

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            LF  +   + +  N +I  Y   G    A+ +F  MP +++ +WN+M+ GL Q     E
Sbjct: 108 TLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEE 167

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
            L LF  MN+L    D+F+L SV+  CA + +L  G QV   V   G + + ++ +SL  
Sbjct: 168 GLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAH 227

Query: 480 FYCKCGFIKMDE 491
            Y KCG +   E
Sbjct: 228 MYMKCGSLGEGE 239



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ SC+   ++  G+Q+H   +K G  +  + + + L+ MY RCG    +L +F E    
Sbjct: 291 VISSCSELATLGQGQQIHAEVIKAGA-SLIVSVISSLISMYSRCGCLEYSLKVFLECENG 349

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           +   W++MI  +   G   +++ LFN M Q+    ND ++  L+   +  G  +     F
Sbjct: 350 DVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFF 409

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M  +  +      +  M+    R G   EA  L + +       ++ D     T++ A
Sbjct: 410 DLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMP------VKADVITWKTLLSA 463

Query: 182 CADLAALEYGKQIHSHIL 199
           C      E  ++I   + 
Sbjct: 464 CKIHKKTEMARRISEEVF 481


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 243/522 (46%), Gaps = 82/522 (15%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTD---ALLLF 64
           ++LL +C T   +   KQLH   +KKG+L +      N+L+   ++ G       A   F
Sbjct: 29  SKLLVNCKTLKEL---KQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAF 85

Query: 65  --DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW---------- 106
             D+    + F +N +I G+   G  ++++ L+       ++P K  F +          
Sbjct: 86  GDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILA 145

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N LI  +A+ G++   R LF+ M  RN ++W S+I+ 
Sbjct: 146 LSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLING 205

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y     ++EAV LF ++    VE    +   +  VI ACA L  LE GK++ S+I   G+
Sbjct: 206 YSGRDLSKEAVSLFFQMGEAGVEP---NPVTMVCVISACAKLKDLELGKKVCSYISELGM 262

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           +  +++ ++LV++Y KCG                D C                AR++FD 
Sbjct: 263 ELSTIMVNALVDMYMKCG----------------DICA---------------ARQIFDE 291

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + VM+N+++S Y+ +   ++ L++  +M + G   D  T+ S ++AC+ LG L  G
Sbjct: 292 CANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVG 351

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K  H +  + G+     +++A++D Y K G    ACK+F  +     +  N++I      
Sbjct: 352 KSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRD 411

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G +E A  IF  M  + L+SWN+MI  L Q     EA++LF  M    +  D+ ++  + 
Sbjct: 412 GDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIA 471

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SAC  + +L+L + V   +    +  D  + T+LVD + +CG
Sbjct: 472 SACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCG 513



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 222/488 (45%), Gaps = 74/488 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C+   ++  G Q+H   LK G L   + ++N L+  Y  CG       LFD M  R
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMG-LEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLER 194

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------KNDF 104
           N  SW ++I G+      ++++ LF  M +                          K   
Sbjct: 195 NVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVC 254

Query: 105 SW-------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           S+             N L+  + K G++  AR +F++   +N + +N+++  YV + +A 
Sbjct: 255 SYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWAS 314

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           + + +  E+   L +  + D   + + I ACA L  L  GK  H+++L NGL+    + +
Sbjct: 315 DVLVILDEM---LQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISN 371

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +++++Y KCG   +A +V   M        ++LI+G    G M  A R+FD   +   V 
Sbjct: 372 AIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVS 431

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI   +  +   EA+ LF +M+  G+  D  T+  + SAC  LG L+  K V  +  
Sbjct: 432 WNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIE 491

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  +  D+ + +AL+D +S+ G PS                                A H
Sbjct: 492 KNDIHVDLQLGTALVDMFSRCGDPS-------------------------------SAMH 520

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F+ M  + + +W + I  ++  G+   A++LF  M +  ++ D     ++++AC++  S
Sbjct: 521 VFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGS 580

Query: 452 LELGEQVF 459
           ++ G Q+F
Sbjct: 581 VDQGRQLF 588



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 36/252 (14%)

Query: 241 LSALISGYANCGKMND---ARRVF--DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           L+ LI+     G +     AR  F  D     S  M+N +I GY S     +A+LL+ +M
Sbjct: 62  LNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQM 121

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
              G++ D  T   +LSACS +  L  G QVHG   K+G+  D+ V+             
Sbjct: 122 LVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVS------------- 168

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N++I  Y+ CG+++  + +F  M  ++++SW S+I G S   
Sbjct: 169 ------------------NSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRD 210

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EA+ LF  M +  +  +  ++  VISACA +  LELG++V + ++ +G++   I+  
Sbjct: 211 LSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVN 270

Query: 476 SLVDFYCKCGFI 487
           +LVD Y KCG I
Sbjct: 271 ALVDMYMKCGDI 282



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           SL  +N +I G +  G   +A+ L+  M  + +  DK++   ++SAC+ I +L  G QV 
Sbjct: 94  SLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVH 153

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             V  +GL+ D  +S SL+ FY +CG + +
Sbjct: 154 GAVLKMGLEGDIFVSNSLIHFYAECGKVDL 183


>gi|414873978|tpg|DAA52535.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
 gi|414873979|tpg|DAA52536.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
          Length = 701

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 211/447 (47%), Gaps = 52/447 (11%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y + G    A  LFD MP +N  +W +M+ G+ + G  +++ +LF+VMP++ND+SW
Sbjct: 155 MLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDYSW 214

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF---KELNSD 163
             ++ G+A+ G L+ AR +F+ MP+RN +AW +M+  YV  G  ++A  LF    E NS 
Sbjct: 215 TTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERNS- 273

Query: 164 LVERLQCDAFILATV-IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                  +A I   + IG  A+   L + +  H H  V       V  +++V      G 
Sbjct: 274 ----YSWNAMISGFLSIGKVAEAVQL-FERMPHRHKNV-------VSWTTMVAGLANNGL 321

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A +  + M   D    +A+I+ YAN G++N+A+R+FD       V W+++I  Y  N
Sbjct: 322 ACRAREFFDRMPAKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKN 381

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
               EAL +F  MR + V  +  TL S+L    S   +   KQ+HG    +G + +  + 
Sbjct: 382 ERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEV---KQIHGLVIALGFLSETSLG 438

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +ALL  YS+                                G +  A   F+ +  K  I
Sbjct: 439 NALLTMYSR-------------------------------SGDLMSAWFAFKRLEQKDAI 467

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +W S++   + +G    AL  F  M +   +    +  +V+SAC ++  +  G ++F  +
Sbjct: 468 TWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSI 527

Query: 463 T-IIGLDSDQIISTSLVDFYCKCGFIK 488
             + GL+      + LVD   + G+++
Sbjct: 528 YHVYGLEPTIEHYSCLVDLLGRAGYVR 554



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 162/353 (45%), Gaps = 42/353 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRR--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           N ++  ++  G   +A+ LF+ MP R  N  SW  M+ G    G   ++ + F+ MP K+
Sbjct: 277 NAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKD 336

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
             +WN +I+ +A  G+L  A+ LF+ M  ++ + W+++I  Y +N    EA+ +F     
Sbjct: 337 TAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMF----- 391

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
            L+ R    +  + T+I       +    KQIH  ++  G   ++ LG++L+ +Y + GD
Sbjct: 392 -LLMRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMYSRSGD 450

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
             SA      +++ D    ++++  +A+ G                         GY   
Sbjct: 451 LMSAWFAFKRLEQKDAITWTSIVQAFADHG------------------------CGY--- 483

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
                ALL F +M R+G    ++T  +VLSAC  +G +  G+++      V  ++  I  
Sbjct: 484 ----HALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEH 539

Query: 343 -SALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHI 392
            S L+D   + G   +A +L   ++  + D  +L T++        +E A+ +
Sbjct: 540 YSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNEVEVAREV 592



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 54/90 (60%)

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +A+LD Y+K G    A +LF  + V + +   +M++ Y   GR+++A+ +F  MP ++  
Sbjct: 153 TAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDY 212

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
           SW +++ G ++NG   EA ++F  M + ++
Sbjct: 213 SWTTVVQGYARNGMLREAREMFDRMPQRNV 242



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 22/222 (9%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           KQ+H   +  G L+ T  + N LL MY R G+   A   F  + +++  +W ++++ F  
Sbjct: 420 KQIHGLVIALGFLSET-SLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFAD 478

Query: 85  LGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-- 136
            G    +L  F  M      P    F+   ++S     G +   R +F  +     +   
Sbjct: 479 HGCGYHALLGFAQMLRHGYKPSSTTFT--AVLSACRHVGLVGKGRKMFKSIYHVYGLEPT 536

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              ++ ++    R G+ REA    KEL   + + ++ D  ILAT++GAC     +E  ++
Sbjct: 537 IEHYSCLVDLLGRAGYVREA----KELVDGMQQGMR-DEAILATLLGACVVHNEVEVARE 591

Query: 194 IHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
           +   ++    D     G  L+ N++   G ++    V  +M+
Sbjct: 592 VGEDLVR--FDPSGTGGYRLLANVFASHGMWDETANVWKVMR 631


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 218/457 (47%), Gaps = 44/457 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNC-----FSWNAMIE---GF-MKLGHKEKSLQLF 95
           N  ++ Y+   NP +A+LL+  M R+       +++  + +   GF +     E    + 
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182

Query: 96  NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
            +    + F  N +I      GEL  AR LF++   R+ ++WNS+I+ YVR G A EA  
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFD 242

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           L+ ++       +  D   +  V+ A A L  L  G+++H  I   GL+    L ++L++
Sbjct: 243 LYYKMGE---LNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMD 299

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y KC +  +A  +   M +      + ++ GYA  G +  A R+F+   +   V+WN++
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNAL 359

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I G++      EAL LFH+M+ + V  D  T+ + LSACS LG L+ G  +H +  K  +
Sbjct: 360 IGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNL 419

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             +V + +AL+D Y+K                               CG I+ A  +F  
Sbjct: 420 TMNVALGTALVDMYAK-------------------------------CGNIKKAIQVFEE 448

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MP ++ ++W ++I GL+ +G P  A+  F  M  + L  D+ +   V+SAC +   ++ G
Sbjct: 449 MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQG 508

Query: 456 EQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
              F ++T   G+       + LVD   + GF++  E
Sbjct: 509 RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAE 545



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 67/345 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G++LH    + G LN T+P+AN L+ MY++C N   A +LF+ M ++   SW  M+ G+
Sbjct: 274 LGRKLHQSIEEMG-LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGY 332

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            K G  E +++LFN MP+K+   WN LI GF +A                          
Sbjct: 333 AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR------------------------ 368

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
                  ++EA+ LF E+ +  V     D   +   + AC+ L AL+ G  +H ++  + 
Sbjct: 369 -------SKEALALFHEMQASSVAP---DKITVVNCLSACSQLGALDVGIWMHHYVDKHN 418

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L  +  LG++LV++Y KCG+   A QV                               F+
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQV-------------------------------FE 447

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                +S+ W ++I G   + +   A+  F +M   G++ D  T   VLSAC   G ++ 
Sbjct: 448 EMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQ 507

Query: 323 GKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           G+   +    K G+   +   S L+D   + G   +A +L   + 
Sbjct: 508 GRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMP 552



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 35/242 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   ++ VG  +H H++ K  L   + +   L+ MY +CGN   A+ +F+EMP RN
Sbjct: 395 LSACSQLGALDVGIWMH-HYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             +W A+I G    G    ++  F+ M       ++ ++  ++S     G +   R  F 
Sbjct: 454 SLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFY 513

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M  +  I+     ++ ++    R GF  EA  L + +        + DA +        
Sbjct: 514 QMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSM------PFEPDAVVWG------ 561

Query: 183 ADLAALEYGKQIHSHILVNG------LDFDSVLGSS---LVNLYGKCGDFNSANQVLNMM 233
               AL +G +IH ++ +        L+ D   G     L N+YG    +  A +V  MM
Sbjct: 562 ----ALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMM 617

Query: 234 KE 235
           +E
Sbjct: 618 EE 619


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 218/457 (47%), Gaps = 44/457 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNC-----FSWNAMIE---GF-MKLGHKEKSLQLF 95
           N  ++ Y+   NP +A+LL+  M R+       +++  + +   GF +     E    + 
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182

Query: 96  NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
            +    + F  N +I      GEL  AR LF++   R+ ++WNS+I+ YVR G A EA  
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFD 242

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           L+ ++       +  D   +  V+ A A L  L  G+++H  I   GL+    L ++L++
Sbjct: 243 LYYKMGE---LNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMD 299

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y KC +  +A  +   M +      + ++ GYA  G +  A R+F+   +   V+WN++
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNAL 359

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I G++      EAL LFH+M+ + V  D  T+ + LSACS LG L+ G  +H +  K  +
Sbjct: 360 IGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNL 419

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             +V + +AL+D Y+K                               CG I+ A  +F  
Sbjct: 420 TMNVALGTALVDMYAK-------------------------------CGNIKKAIQVFEE 448

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MP ++ ++W ++I GL+ +G P  A+  F  M  + L  D+ +   V+SAC +   ++ G
Sbjct: 449 MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQG 508

Query: 456 EQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDE 491
              F ++T   G+       + LVD   + GF++  E
Sbjct: 509 RDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAE 545



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 67/345 (19%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +G++LH    + G LN T+P+AN L+ MY++C N   A +LF+ M ++   SW  M+ G+
Sbjct: 274 LGRKLHQSIEEMG-LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGY 332

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            K G  E +++LFN MP+K+   WN LI GF +A                          
Sbjct: 333 AKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR------------------------ 368

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
                  ++EA+ LF E+ +  V     D   +   + AC+ L AL+ G  +H ++  + 
Sbjct: 369 -------SKEALALFHEMQASSVAP---DKITVVNCLSACSQLGALDVGIWMHHYVDKHN 418

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L  +  LG++LV++Y KCG+   A QV                               F+
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQV-------------------------------FE 447

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                +S+ W ++I G   + +   A+  F +M   G++ D  T   VLSAC   G ++ 
Sbjct: 448 EMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQ 507

Query: 323 GKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           G+   +    K G+   +   S L+D   + G   +A +L   + 
Sbjct: 508 GRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMP 552



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 35/242 (14%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   ++ VG  +H H++ K  L   + +   L+ MY +CGN   A+ +F+EMP RN
Sbjct: 395 LSACSQLGALDVGIWMH-HYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRN 453

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             +W A+I G    G    ++  F+ M       ++ ++  ++S     G +   R  F 
Sbjct: 454 SLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFY 513

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M  +  I+     ++ ++    R GF  EA  L + +        + DA +        
Sbjct: 514 QMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSM------PFEPDAVVWG------ 561

Query: 183 ADLAALEYGKQIHSHILVNG------LDFDSVLGSS---LVNLYGKCGDFNSANQVLNMM 233
               AL +G +IH ++ +        L+ D   G     L N+YG    +  A +V  MM
Sbjct: 562 ----ALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMM 617

Query: 234 KE 235
           +E
Sbjct: 618 EE 619


>gi|242090301|ref|XP_002440983.1| hypothetical protein SORBIDRAFT_09g018390 [Sorghum bicolor]
 gi|241946268|gb|EES19413.1| hypothetical protein SORBIDRAFT_09g018390 [Sorghum bicolor]
          Length = 454

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 216/464 (46%), Gaps = 75/464 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L    +SC T   + + + LH      G++     +A+ LL  Y+R G   DA  +FD M
Sbjct: 23  LPTAFKSCPT---LPLARALHAAAEVTGLVRDPF-VASSLLHAYLRLGATVDARAVFDGM 78

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P                              PQ+    W+ L++  A  G+   A  L  
Sbjct: 79  PP-----------------------------PQRTVVGWSALVAAHAARGDAGGAWRLLE 109

Query: 128 DMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           +M R      N I WN ++    R+G AR+AV     ++ + +  L+ DA  ++  + A 
Sbjct: 110 EMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALVRMHGEGL--LRPDATGVSCALSAV 167

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
            D+  +  G+Q+H + +  G   D+ + ++L+++YGKCG      QV +     D    +
Sbjct: 168 GDVGLVSVGEQLHGYAVKAGCRLDACVVTALIDMYGKCGRAAEIVQVFDESSHMDVASCN 227

Query: 243 ALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           ALI+G +   ++++A R+F     R  + + V W S+++  + N +D EA+ LF +M+  
Sbjct: 228 ALIAGLSRNTQVSEALRLFREFVGRGLELNVVSWTSIVACCVQNGKDLEAVELFREMQAQ 287

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           G+  ++ T+  VL A +++  L HG+  H  A + G + DV V+SAL+D Y+K       
Sbjct: 288 GIEPNSVTIPCVLPAFANVAALTHGRSAHSFALRKGFLHDVYVSSALVDMYAK------- 340

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                                   CGR++DA+ IF  MP+++++SWN+MI G + +G  +
Sbjct: 341 ------------------------CGRVKDARTIFDAMPSRNVVSWNAMIGGYAMHGEAV 376

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
            A+ LF +M     + D  +   V++AC      E G   F ++
Sbjct: 377 NAVRLFHSMLLCKQKPDMVTFTCVLAACTQAGLTEEGRHYFKKM 420



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 15/330 (4%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D  +L T   +C     L   + +H+   V GL  D  + SSL++ Y + G    A  V 
Sbjct: 19  DPHLLPTAFKSCP---TLPLARALHAAAEVTGLVRDPFVASSLLHAYLRLGATVDARAVF 75

Query: 231 NMMKEPDDFCL--SALISGYANCGKMNDARRVF-----DRTTDTSSVMWNSMISGYISNN 283
           + M  P    +  SAL++ +A  G    A R+      D   + + + WN ++SG   + 
Sbjct: 76  DGMPPPQRTVVGWSALVAAHAARGDAGGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSG 135

Query: 284 EDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
              +A++   +M   G+L  DA+ ++  LSA   +G +  G+Q+HG+A K G   D  V 
Sbjct: 136 RARDAVVALVRMHGEGLLRPDATGVSCALSAVGDVGLVSVGEQLHGYAVKAGCRLDACVV 195

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL- 401
           +AL+D Y K G  ++  ++F E    D    N +I   S   ++ +A  +FR    + L 
Sbjct: 196 TALIDMYGKCGRAAEIVQVFDESSHMDVASCNALIAGLSRNTQVSEALRLFREFVGRGLE 255

Query: 402 ---ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
              +SW S++    QNG  +EA++LF  M    +  +  ++  V+ A AN+++L  G   
Sbjct: 256 LNVVSWTSIVACCVQNGKDLEAVELFREMQAQGIEPNSVTIPCVLPAFANVAALTHGRSA 315

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +     G   D  +S++LVD Y KCG +K
Sbjct: 316 HSFALRKGFLHDVYVSSALVDMYAKCGRVK 345


>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
 gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 617

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 234/525 (44%), Gaps = 110/525 (20%)

Query: 4   RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           R+DY  LA  LQS N    I   K++H   LK    +  +   N L+   +R G+   A 
Sbjct: 82  RVDYALLAEWLQSSNGMRLI---KRIHAMALK-CFDDQVIYFGNNLISSCVRLGDLVYAR 137

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF--------------------NVMPQK 101
            +FD MP +N  +W AMI+G++K G ++++  LF                    N+  ++
Sbjct: 138 KVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRR 197

Query: 102 NDFSWNMLISG-------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            +F     + G                   +A+ GEL +A   F+ M  ++ I+W ++I 
Sbjct: 198 AEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVIS 257

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
              R G   +A+ +F  +   L      + F + +++ AC++  AL +G+Q+HS ++   
Sbjct: 258 ACSRKGHGIKAIGMFIGM---LNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRM 314

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           +  D  +G+SL+++Y KCG+                               ++D R+VFD
Sbjct: 315 IKTDVFVGTSLMDMYAKCGE-------------------------------ISDCRKVFD 343

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
             ++ ++V W S+I+ +       EA+ LF  M+R  ++ +  T+ S+L AC S+G L  
Sbjct: 344 GMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLL 403

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++H    K  +  +V + S L+  Y K G   DA  +  +L                 
Sbjct: 404 GKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL----------------- 446

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                         P++ ++SW +MI G S  G   EALD    M +  +  + F+ +S 
Sbjct: 447 --------------PSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSA 492

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + ACAN  SL +G  + +        S+  + ++L+  Y KCGF+
Sbjct: 493 LKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFV 537



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 212/492 (43%), Gaps = 109/492 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL  C+      +G+Q+H + +K G+ N  L + + L+  Y +CG  T AL  FD M  +
Sbjct: 190 LLNLCSRRAEFELGRQVHGNMVKVGVGN--LIVESSLVYFYAQCGELTSALRAFDMMEEK 247

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------------------------- 95
           +  SW A+I    + GH  K++ +F                                   
Sbjct: 248 DVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVH 307

Query: 96  ----NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                 M + + F    L+  +AK GE+   R +F+ M  RN + W S+I  + R GF  
Sbjct: 308 SLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGE 367

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+ +       L  +   + +++ AC  + AL  GK++H+ I+ N ++ +  +GS
Sbjct: 368 EAISLFRIMKR---RHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGS 424

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV LY K                               CG+  DA  V  +      V 
Sbjct: 425 TLVWLYCK-------------------------------CGESRDAFNVLQQLPSRDVVS 453

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MISG  S   ++EAL    +M + GV  +  T +S L AC++   L  G+ +H  A 
Sbjct: 454 WTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAK 513

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K   + +V V SAL+  Y+K G  S+A +                               
Sbjct: 514 KNHALSNVFVGSALIHMYAKCGFVSEAFR------------------------------- 542

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F +MP K+L+SW +MI+G ++NG   EAL L   M      +D +  A+++S C +I  
Sbjct: 543 VFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDI-- 600

Query: 452 LELGEQVFARVT 463
            EL E V +  T
Sbjct: 601 -ELDEAVESSAT 611


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 214/485 (44%), Gaps = 98/485 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LLQSC + +S+ +GKQLH   +  G  +    I+N LL +Y +CG    A+      
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKF-ISNHLLNLYSKCGQLDTAI------ 107

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                     LF VMP+KN  S N+LI+G+ ++G+  TAR +F+
Sbjct: 108 -------------------------TLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFD 142

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +MP RN   WN+M+   ++  F  E + LF  +N         D F L +V+  CA L A
Sbjct: 143 EMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNE---LGFLPDEFALGSVLRGCAGLRA 199

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+Q+H ++   G +F+ V+ SSL ++Y KC                           
Sbjct: 200 LVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKC--------------------------- 232

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
               G + +  R+       + V WN++I+G   N    E L  ++ M+  G   D  T 
Sbjct: 233 ----GSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SV+S+CS L  L  G+Q+H    K G    +IV+                         
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAGA--SLIVS------------------------- 321

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
               +++++I++YS CG +E +  +F    N  ++ W+SMI     +G  +EA+DLF  M
Sbjct: 322 ----VISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQM 377

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGF 486
            +  L  +  +  S++ AC++    E G + F   V   G+       T +VD   + G 
Sbjct: 378 EQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGS 437

Query: 487 IKMDE 491
           ++  E
Sbjct: 438 VEEAE 442



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 157/312 (50%), Gaps = 31/312 (9%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           + + ++ +C    +L  GKQ+HS I+ +G   D  + + L+NLY KCG  ++A  +  +M
Sbjct: 54  LFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVM 113

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              +    + LI+GY   G    AR++FD   + +   WN+M++G I    + E L LF 
Sbjct: 114 PRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFS 173

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M   G L D   L SVL  C+ L  L  G+QVHG+  K G   +++V S+L   Y K  
Sbjct: 174 RMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMK-- 231

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        CG + + + + R MP++++++WN++I G +Q
Sbjct: 232 -----------------------------CGSLGEGERLIRAMPSQNVVAWNTLIAGRAQ 262

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG P E LD +  M     R DK +  SVIS+C+ +++L  G+Q+ A V   G      +
Sbjct: 263 NGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSV 322

Query: 474 STSLVDFYCKCG 485
            +SL+  Y +CG
Sbjct: 323 ISSLISMYSRCG 334



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  + S  + +L +C S   L  GKQ+H      G   D  +++ LL+ YSK G    A 
Sbjct: 48  IWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAI 107

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            LF  +   + +  N +I  Y   G    A+ +F  MP +++ +WN+M+ GL Q     E
Sbjct: 108 TLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEE 167

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
            L LF  MN+L    D+F+L SV+  CA + +L  G QV   V   G + + ++ +SL  
Sbjct: 168 GLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAH 227

Query: 480 FYCKCG 485
            Y KCG
Sbjct: 228 MYMKCG 233



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ SC+   ++  G+Q+H   +K G  +  + + + L+ MY RCG    +L +F E    
Sbjct: 291 VISSCSELATLGQGQQIHAEVIKAGA-SLIVSVISSLISMYSRCGCLEYSLKVFLECENG 349

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           +   W++MI  +   G   +++ LFN M Q+    ND ++  L+   +  G  +     F
Sbjct: 350 DVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFF 409

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M  +  +      +  M+    R G   EA  L + +       ++ D     T++ A
Sbjct: 410 DLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMP------VKADVITWKTLLSA 463

Query: 182 CADLAALEYGKQIHSHIL 199
           C      E  ++I   + 
Sbjct: 464 CKIHKKTEMARRISEEVF 481


>gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 691

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 204/449 (45%), Gaps = 80/449 (17%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           MR G   +A +LFDEMP+RN  ++NAMI G+ + GH  + + LF+ MP+++ FS+N +I+
Sbjct: 52  MRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIFSYNTMIA 111

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G  K G++  A  +F  MP R+ ++WNSMI  YV NG   EA+R+F              
Sbjct: 112 GLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVF-------------S 158

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
             +L  V+     +A L                    +G   V+L         A +   
Sbjct: 159 GMVLKDVVSWNLVIAGL--------------------VGVGKVDL---------AEEFFK 189

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M   D    + +ISG A+ G++ +AR +F+         WN+MI+GYI N       +L
Sbjct: 190 EMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWNTMIAGYIENGCIEIGEVL 249

Query: 292 FHKMR---------------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           F KM                RN  ++DA  L           F+E  ++     C+    
Sbjct: 250 FQKMPQRDFRSWNEMINGLVRNQRIQDAMRL-----------FVEMPQK-----CRRS-- 291

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
                 ++++    + G+  +A     +    DT+    +I  Y   G ++ A  IF  M
Sbjct: 292 -----WNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIFELM 346

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P +   +WN +I GL +N    E L  F  M +     D+ +  SV++ C+++ +L LG 
Sbjct: 347 PARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGR 406

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           Q+ A+VT  G +    +S ++V  Y +CG
Sbjct: 407 QIHAQVTKTGFNYFVAVSNAMVTLYARCG 435



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 204/466 (43%), Gaps = 82/466 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++ Y + G+  + + LFDEMP R+ FS+N MI G MK G    + ++F  MP ++  
Sbjct: 76  NAMIRGYFQNGHFGEGVSLFDEMPERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVV 135

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-- 162
           SWN +ISG+   G +  A  +F+ M  ++ ++WN +I   V  G    A   FKE+ +  
Sbjct: 136 SWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRD 195

Query: 163 ---------------------DLVERLQC-DAFILATVIGACADLAALEYGKQIHSHI-- 198
                                 L E +   D     T+I    +   +E G+ +   +  
Sbjct: 196 IASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQ 255

Query: 199 --------LVNGLDFDSVLGSSL---VNLYGKC--------------GDFNSANQVLNMM 233
                   ++NGL  +  +  ++   V +  KC              G    A+  L   
Sbjct: 256 RDFRSWNEMINGLVRNQRIQDAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKS 315

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              D    + LI GY   G+++ A  +F+      +  WN +I G   N+   E L  F 
Sbjct: 316 PFSDTVSWTNLIVGYFETGEVDTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFV 375

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           KM+  G   D +T  SVL+ CS L  L  G+Q+H    K G    V V++A++  Y++ G
Sbjct: 376 KMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCG 435

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
             + A  LFS ++ +D                                ISWNS+I GL+ 
Sbjct: 436 NSNSALLLFSAMRSHD-------------------------------FISWNSIICGLAH 464

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           NG+ +EA+++F  M  +D++ +  +   V+SAC++   ++ G+  F
Sbjct: 465 NGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYF 510



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 110/234 (47%), Gaps = 14/234 (5%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C+   ++H+G+Q+H    K G  N  + ++N ++ +Y RCGN   ALLLF  M   
Sbjct: 392 VLTICSDLPTLHLGRQIHAQVTKTG-FNYFVAVSNAMVTLYARCGNSNSALLLFSAMRSH 450

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN++I G    G+  +++++F  M     + N  ++  ++S  + AG +   +  F
Sbjct: 451 DFISWNSIICGLAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYF 510

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M  +  +      +  ++    R G   EA+   +++ ++ VE     A +   V+GA
Sbjct: 511 DFMKYKCCLEPTIEHYTCIVDLLGRFGLIDEAMSFLRQMEANGVE---VPASVWGAVLGA 567

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C     ++ G +I    ++     +S +   L  +Y   G    A +V   M+E
Sbjct: 568 CRIHKNMQVG-EIAGERILEIEPHNSGVYIILAEMYLSSGKREDAERVWVRMRE 620



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           L S +S C   GF E  + +     +     + +  +A++  Y + G   +   LF E+ 
Sbjct: 44  LNSRISDCMRNGFTEEAQMLFDEMPQ----RNTVTYNAMIRGYFQNGHFGEGVSLFDEMP 99

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
             D    NTMI      G I  A  IF+ MP + ++SWNSMI G   NG   EAL +F  
Sbjct: 100 ERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSG 159

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           M    +  D  S   VI+    +  ++L E+ F
Sbjct: 160 M----VLKDVVSWNLVIAGLVGVGKVDLAEEFF 188



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           +A  L   ++ + +P+ + + +S   + +   LN+ I+     G  E+A+ +F  MP ++
Sbjct: 12  LAVVLSLNFTGKWIPTRSIQSYSTSALLNLKPLNSRISDCMRNGFTEEAQMLFDEMPQRN 71

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            +++N+MI G  QNG   E + LF  M + D+    FS  ++I+       +    ++F 
Sbjct: 72  TVTYNAMIRGYFQNGHFGEGVSLFDEMPERDI----FSYNTMIAGLMKFGDINGASEIFQ 127

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++       D +   S++  Y   G I
Sbjct: 128 KMPF----RDVVSWNSMISGYVSNGLI 150


>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
 gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
          Length = 691

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 219/506 (43%), Gaps = 109/506 (21%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+  G  LH H LK G+L S    +N LL  Y RC  P+ A  +FDE+P     SW++++
Sbjct: 19  SLLAGAHLHSHLLKSGLLAS---YSNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLV 75

Query: 80  EGFMKLGHKEKSLQLFNVMPQK------------------------------------ND 103
             +   G    +L  F  M  +                                    + 
Sbjct: 76  TAYSNNGMPRDALWAFRSMRGRGVPCNEYALPIVLKCAPDVRFGAQVHALAVATRLIQDV 135

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           F  N L++ +   G +  A+ +F D P   RNA++WN MI  YV+N   R+AV +F+E+ 
Sbjct: 136 FVTNALVAMYGGFGMVDEAKRIF-DEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREM- 193

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
             +    + + F  + V+ AC      E G+Q+H  ++  G D                 
Sbjct: 194 --VWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYD----------------- 234

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                          D F  +AL+  Y+  G +  A  VF++      V WN++I+G ++
Sbjct: 235 --------------KDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVT 280

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           +  D  AL L  +M+  GV+ +  TL+SVL AC+  G    G+Q+HG   K     D  V
Sbjct: 281 HGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFV 340

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           A  L+D Y+K G   DA K+F  +   D IL N +I+                       
Sbjct: 341 AVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALIS----------------------- 377

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNK--LDLRMDKFSLASVISACANISSLELGEQVF 459
                   G S +G   E L LF  M K  LDL +++ +LA+V+ + A++ ++   +QV 
Sbjct: 378 --------GCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVH 429

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCG 485
           A    IGL SD  +   L+D Y KCG
Sbjct: 430 ALAEKIGLLSDSHVVNGLIDSYWKCG 455



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 230/518 (44%), Gaps = 104/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C        G+Q+H   ++ G  +  +  AN L+ MY + G+   A ++F+++P  
Sbjct: 208 VVNACTGSRDWETGRQVHGMVVRTG-YDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAA 266

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQL----------------------------FNVMPQ-- 100
           +  SWNA+I G +  GH  ++L+L                            FN+  Q  
Sbjct: 267 DVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIH 326

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     ++F    L+  +AK G L  AR +F+ MPRR+ I WN++I     +G   
Sbjct: 327 GFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHG 386

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E + LF  +  + ++ L  +   LA V+ + A L A+ + KQ+H+     GL  DS    
Sbjct: 387 EVLSLFHRMRKEGLD-LDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDS---- 441

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                            V+N            LI  Y  CG+++ A +VF+ +     + 
Sbjct: 442 ----------------HVVN-----------GLIDSYWKCGRLDYAIKVFEESCSDDIIS 474

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
             SM++     +   +A+ LF +M R G+  D+  L+S+L+AC+SL   E GKQVH H  
Sbjct: 475 STSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLI 534

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     DV   +AL+ TY+K                               CG IEDA  
Sbjct: 535 KRQFTSDVFAGNALVYTYAK-------------------------------CGSIEDADM 563

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F  +P K ++SW++MI GL+Q+G    AL+LF  M    +  +  +L SV+SAC +   
Sbjct: 564 AFSGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLSACNHAGL 623

Query: 452 LELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIK 488
           ++  ++ F  +    G+D  +     ++D   + G +K
Sbjct: 624 VDDAKKYFESMKEAFGIDRTEEHYACMIDILGRAGKLK 661



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 155/359 (43%), Gaps = 76/359 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C    + ++G+Q+H  F+ K   +S   +A  L+ MY + G   DA  +FD M
Sbjct: 306 LSSVLKACAGAGAFNLGRQIH-GFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFM 364

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
           PRR+   WNA+I G    G   + L LF+ M ++                          
Sbjct: 365 PRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICH 424

Query: 102 ---------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                          +    N LI  + K G L  A  +F +    + I+  SM+    +
Sbjct: 425 TKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQ 484

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
                +A++LF ++   L + L+ D+F+L++++ ACA L+A E GKQ+H+H++      D
Sbjct: 485 CDHGEDAIKLFVQM---LRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSD 541

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
              G++LV  Y KCG    A+   + + E      SA+I G A  G              
Sbjct: 542 VFAGNALVYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHG-------------- 587

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
                                AL LFH+M   GV  +  TL SVLSAC+  G ++  K+
Sbjct: 588 -----------------HGKRALELFHRMLDEGVAPNNITLTSVLSACNHAGLVDDAKK 629



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 35/247 (14%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+S Y+ C   + AR VFD   D   V W+S+++ Y +N    +AL  F  MR  GV  +
Sbjct: 43  LLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCN 102

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
              L  VL     + F   G QVH  A    +I DV V +AL                  
Sbjct: 103 EYALPIVLKCAPDVRF---GAQVHALAVATRLIQDVFVTNAL------------------ 141

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIF-RTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                        + +Y   G +++AK IF      ++ +SWN MI    +N    +A+ 
Sbjct: 142 -------------VAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVG 188

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           +F  M     R ++F  + V++AC      E G QV   V   G D D   + +LVD Y 
Sbjct: 189 VFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYS 248

Query: 483 KCGFIKM 489
           K G I+M
Sbjct: 249 KLGDIEM 255



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 16/183 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+    S +   N L+  Y +CG+  DA + F  +
Sbjct: 510 LSSLLNACASLSAYEQGKQVHAHLIKRQ-FTSDVFAGNALVYTYAKCGSIEDADMAFSGL 568

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P +   SW+AMI G  + GH +++L+LF+ M  +    N+ +   ++S    AG +  A+
Sbjct: 569 PEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLSACNHAGLVDDAK 628

Query: 124 TLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M       R    +  MI    R G  ++A+ L   +        Q +A +   +
Sbjct: 629 KYFESMKEAFGIDRTEEHYACMIDILGRAGKLKDAMELVNNMP------FQANAAVWGAL 682

Query: 179 IGA 181
           +GA
Sbjct: 683 LGA 685


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 225/505 (44%), Gaps = 84/505 (16%)

Query: 19  HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
           +S  +G++++ H     +L S   I  RLL++ +       +  +FDEMP+R   +    
Sbjct: 25  YSPDLGRRIYGH-----VLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALA---- 75

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
               +++G    S  L   +  +     N ++  +AK  ++  A   F D   ++  AWN
Sbjct: 76  ----LRIGKAVHSKSLILGIDSEGRLG-NAIVDLYAKCAQVSYAEKQF-DFLEKDVTAWN 129

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           SM+  Y   G   + +R F  L  +   ++  + F  + V+  CA    +E+G+QIH  +
Sbjct: 130 SMLSMYSSIGKPGKVLRSFVSLFEN---QIFPNKFTFSIVLSTCARETNVEFGRQIHCSM 186

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG------ 252
           +  GL+ +S  G +LV++Y KC   + A +V   + +P+  C + L SGY   G      
Sbjct: 187 IKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAV 246

Query: 253 -----------------------------KMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                        K+ DAR +F   +    V WN MISG+    
Sbjct: 247 LVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRG 306

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
            +T A+  F  MR++ V    STL SVLSA   +  L+ G  VH  A K+G+  ++ V S
Sbjct: 307 CETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGS 366

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +L                               +++YS C ++E A  +F  +  K+ + 
Sbjct: 367 SL-------------------------------VSMYSKCEKMEAAAKVFEALEEKNDVF 395

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+MI G + NG   + ++LF +M      +D F+  S++S CA    LE+G Q  + + 
Sbjct: 396 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIII 455

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
              L  +  +  +LVD Y KCG ++
Sbjct: 456 KKKLAKNLFVGNALVDMYAKCGALE 480



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 226/522 (43%), Gaps = 108/522 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +     ++ +G  +H   +K G L S + + + L+ MY +C     A  +F+ +
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLG-LASNIYVGSSLVSMYSKCEKMEAAAKVFEAL 388

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             +N   WNAMI G+   G   K ++LF  M                             
Sbjct: 389 EEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGS 448

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       KN F  N L+  +AK G L+ AR +F  M  R+ + WN++I  YV++ 
Sbjct: 449 QFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDE 508

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA  LFK +N   +  +  D   LA+ + AC  +  L  GKQ+H   +  GLD D  
Sbjct: 509 NESEAFDLFKRMN---LCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLH 565

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GSSL+++Y K                               CG + DAR+VF    + S
Sbjct: 566 TGSSLIDMYSK-------------------------------CGIIKDARKVFSSLPEWS 594

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V  N++I+GY  NN + EA++LF +M   GV     T A+++ AC     L  G Q HG
Sbjct: 595 VVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHG 653

Query: 329 HACKVGVIDD-VIVASALLDTY-SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
              K G   +   +  +LL  Y + RGM ++AC LFSEL                     
Sbjct: 654 QITKRGFSSEGEYLGISLLGMYMNSRGM-TEACALFSELS-------------------- 692

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                       KS++ W  M+ G SQNG   EAL  +  M    +  D+ +  +V+  C
Sbjct: 693 ----------SPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVC 742

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + +SSL  G  + + +  +  D D++ S +L+D Y KCG +K
Sbjct: 743 SVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMK 784



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 209/475 (44%), Gaps = 106/475 (22%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----- 101
           ++  Y+R G   DA LLF EM   +  +WN MI G  K G +  +++ F  M +      
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST 326

Query: 102 ----------------------------------NDFSWNMLISGFAKAGELKTARTLFN 127
                                             N +  + L+S ++K  +++ A  +F 
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  +N + WN+MI  Y  NG + + + LF ++ S        D F   +++  CA    
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSS---GYNIDDFTFTSLLSTCAASHD 443

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE G Q HS I+   L  +  +G++LV++Y K                            
Sbjct: 444 LEMGSQFHSIIIKKKLAKNLFVGNALVDMYAK---------------------------- 475

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              CG + DAR++F+R  D  +V WN++I  Y+ +  ++EA  LF +M   G++ D + L
Sbjct: 476 ---CGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACL 532

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           AS L AC+ +  L  GKQVH  + K G+  D+   S+L+D YSK G+  DA K+FS L  
Sbjct: 533 ASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPE 592

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           +  + +N +I  YS    +E+A  +F+ M              L++  +P E        
Sbjct: 593 WSVVSMNALIAGYSQ-NNLEEAVVLFQEM--------------LTRGVNPSE-------- 629

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDFY 481
                     + A+++ AC    SL LG Q   ++T  G  S+ + +  SL+  Y
Sbjct: 630 ---------ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMY 675



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 160/361 (44%), Gaps = 78/361 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C   H ++ GKQ+H   +K G L+  L   + L+ MY +CG   DA  +F  +
Sbjct: 532 LASTLKACTHVHGLYQGKQVHCLSVKCG-LDRDLHTGSSLIDMYSKCGIIKDARKVFSSL 590

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------------------PQK----N 102
           P  +  S NA+I G+ +  + E+++ LF  M                     P+      
Sbjct: 591 PEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGT 649

Query: 103 DFSWNMLISGFAKAGE---------------LKTARTLFNDMPRRNAIA-WNSMIHCYVR 146
            F   +   GF+  GE               +  A  LF+++    +I  W  M+  + +
Sbjct: 650 QFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQ 709

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NGF  EA++ +KE+  D V     D     TV+  C+ L++L  G+ IHS I     D D
Sbjct: 710 NGFYEEALKFYKEMRHDGV---LPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLD 766

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            +  ++L+++Y                               A CG M  + +VFD    
Sbjct: 767 ELTSNTLIDMY-------------------------------AKCGDMKGSSQVFDEMRR 795

Query: 267 TSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            S+V+ WNS+I+GY  N    +AL +F  MR++ ++ D  T   VL+ACS  G +  G++
Sbjct: 796 RSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRK 855

Query: 326 V 326
           +
Sbjct: 856 I 856


>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1243

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 230/513 (44%), Gaps = 110/513 (21%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG---HKEKSLQLFNVMPQK 101
           N ++  Y++    T A  LFDEMP R+  +WNAMI G++  G     E++ +LF+ MP +
Sbjct: 419 NTMISGYVKRREMTQARKLFDEMPERDVVTWNAMISGYVSCGGIRFLEEARKLFDEMPSR 478

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL- 160
           + FSWN +ISG+AK   +  A  LF  MP RNA++W++MI  +  NG    A  LF+ + 
Sbjct: 479 DSFSWNTMISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEVNRAFDLFRRMP 538

Query: 161 ---NSDLV---------ERLQCDAFILA-----------------TVIGACADLAALEYG 191
              +S L          ERL+  A++L                  T+I        +E  
Sbjct: 539 VKDSSSLCALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAA 598

Query: 192 K----QI--------HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
           +    QI        H          + V  +S++  Y K GD  SA  + + MK+ D  
Sbjct: 599 RCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTI 658

Query: 240 CLSALISGYANCGKMNDA-------------------------------RRVFDRTTDTS 268
             + +I GY +  +M+DA                               R  F++T + +
Sbjct: 659 SWNTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGYASVGNLELARHYFEKTPEKN 718

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNS+I+ Y  N +  EA+ +F +M  +G   D  TL S+LS  + L  L  G Q+H 
Sbjct: 719 IVSWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQ 778

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K  VI DV V +AL+  YS+                               CG I +
Sbjct: 779 IVVKT-VIPDVPVHNALITMYSR-------------------------------CGEIME 806

Query: 389 AKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           ++ IF  M   + +I+WN++I G + +G+  EAL+LF +M    +     +  SV++ACA
Sbjct: 807 SRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACA 866

Query: 448 NISSL-ELGEQVFARVTIIGLDSDQIISTSLVD 479
           +   + E  EQ  + +++  ++      +SLV+
Sbjct: 867 HAGLVDEAKEQFLSMMSVYKIEPQMEHYSSLVN 899



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 171/354 (48%), Gaps = 66/354 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++ Y++ G+   A LLFD+M  R+  SWN MI+G++ +   + +  LF+ MP ++  
Sbjct: 630 NSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAH 689

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWNM++SG+A  G L+ AR  F   P +N ++WNS+I  Y +N   +EAV +F  +N   
Sbjct: 690 SWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVFIRMN--- 746

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           ++  + D   L +++     L  L  G Q+H                             
Sbjct: 747 IDGEKPDPHTLTSLLSVSTGLVNLRLGMQMH----------------------------- 777

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNN 283
              Q++     PD    +ALI+ Y+ CG++ ++RR+FD       V+ WN++I GY  + 
Sbjct: 778 ---QIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHG 834

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
             +EAL LF  M+  G+     T  SVL+AC+  G ++  K+                  
Sbjct: 835 NASEALNLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEAKEQF---------------L 879

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           +++  Y          K+  +++ Y     ++++ V S  G+ E+A ++ ++MP
Sbjct: 880 SMMSVY----------KIEPQMEHY-----SSLVNVISGQGQFEEAMYVIKSMP 918



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 28/240 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL       ++ +G Q+H   +K  I +  +P+ N L+ MY RCG   ++  +FDEM
Sbjct: 757 LTSLLSVSTGLVNLRLGMQMHQIVVKTVIPD--VPVHNALITMYSRCGEIMESRRIFDEM 814

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTA 122
             +R   +WNA+I G+   G+  ++L LF  M       +  ++  +++  A AG +  A
Sbjct: 815 KLKREVITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEA 874

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +  F  M     I      ++S+++     G   EA+ + K +        + D  +   
Sbjct: 875 KEQFLSMMSVYKIEPQMEHYSSLVNVISGQGQFEEAMYVIKSMP------FEPDKTVWGA 928

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS----LVNLYGKCGDFNSANQV-LNM 232
           ++ AC       Y     +H+    +       S+    L N+Y   G ++ A+QV +NM
Sbjct: 929 LLDACRI-----YNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNM 983


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 195/377 (51%), Gaps = 39/377 (10%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+  + K   L+ A  LF++MP+R+ ++W S++  Y +     + + +F  + +   +
Sbjct: 41  NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFT--TD 98

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           RLQ D F+ AT++ ACA L +L  GKQ+H+  +++    D V+ SSLV++Y KCG  + A
Sbjct: 99  RLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIA 158

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V + +        +A++SGYA  G  ++A  +F RT   +   W ++ISG + +    
Sbjct: 159 RSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCI 218

Query: 287 EALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           +   +F +MRR GV + D   L+SV+ AC++L  L  GKQ+HG     G    + +++AL
Sbjct: 219 DGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNAL 278

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K                               C  I  A+++F  M ++ ++SW 
Sbjct: 279 VDMYAK-------------------------------CSDILAARNVFNRMLHRDVVSWT 307

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           S+IVG +Q+G   EALDL+  M   +++ ++ +   +I AC++   +  G ++F      
Sbjct: 308 SIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFK----- 362

Query: 466 GLDSDQIISTSLVDFYC 482
            +  D  IS SL  F C
Sbjct: 363 AMIEDYRISPSLQLFTC 379



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 154/309 (49%), Gaps = 35/309 (11%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C    A    K+IH+ I+ +GL+    L ++L++ YGKC          N+++       
Sbjct: 12  CTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKC----------NLLQ------- 54

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                         DA  +FD       V W S+++ Y       + L +FH M     L
Sbjct: 55  --------------DAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100

Query: 302 E-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           + D    A++L AC+SL  L  GKQVH        +DD +V S+L+D Y+K G+PS A  
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARS 160

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F  + V  ++    M++ Y+  G  ++A  +F   P ++L SW ++I GL Q+G  I+ 
Sbjct: 161 VFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDG 220

Query: 421 LDLFCNMNK--LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
             +F  M +  +D+ +D   L+SV+ ACAN++ L LG+Q+   V   G +S   IS +LV
Sbjct: 221 CYMFIEMRREGVDI-VDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALV 279

Query: 479 DFYCKCGFI 487
           D Y KC  I
Sbjct: 280 DMYAKCSDI 288



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 184/409 (44%), Gaps = 96/409 (23%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A LL++C +  S+ +GKQ+H  F+    ++  + + + L+ MY +CG P+ A  +FD + 
Sbjct: 108 ATLLKACASLCSLRLGKQVHARFVLSPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSIL 166

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
            +   SW AM+ G+ + G K+++++LF   P +N +SW  LISG  ++G           
Sbjct: 167 VKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDG------ 220

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
                         CY+     RE V        D+V     D  +L++V+GACA+LA L
Sbjct: 221 --------------CYMFIEMRREGV--------DIV-----DPLVLSSVVGACANLAVL 253

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             GKQIH  ++ +G +    + ++LV++Y KC D  +A  V N M   D    +++I G 
Sbjct: 254 GLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGA 313

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           A  G+  +A  ++D+           M+   I  NE                     T  
Sbjct: 314 AQHGRAKEALDLYDQ-----------MVLAEIKPNE--------------------VTFV 342

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
            ++ ACS  G +  G+++        +I+D  ++ +L              +LF+     
Sbjct: 343 GLIYACSHAGLVSKGRKLFK-----AMIEDYRISPSL--------------QLFT----- 378

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGS 416
                   + + S  G + +A+ + +TMP+K    +W +++     +G+
Sbjct: 379 ------CFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGN 421


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 207/433 (47%), Gaps = 74/433 (17%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISG------------- 112
           N FSWNA I G+++ G  E    L+  M      + ++ ++ +L+ G             
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180

Query: 113 ----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                                     GEL  A  +FN    R+ + WNSMI   V+ G A
Sbjct: 181 LGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLA 240

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA++++KE+ +   E+++ +   +  +I +C+ +  L  GK+ H +I  +GL+F   L 
Sbjct: 241 IEAIKIYKEMEA---EKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLT 297

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+++Y KCG+  +A  + + M +      + ++ GYA  G ++ AR +  +  + S V
Sbjct: 298 NALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVV 357

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++ISG +   +  EAL LFH+M+   +  D  T+ + LSACS LG L+ G  +H + 
Sbjct: 358 PWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYI 417

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +  +  DV + +AL+D Y+K                               CG I  A 
Sbjct: 418 ERHKLSIDVALGTALVDMYAK-------------------------------CGNIARAL 446

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  +P ++ ++W ++I GL+ +G+  +AL  F  M  + +  D+ +   V+SAC +  
Sbjct: 447 QVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG 506

Query: 451 SLELGEQVFARVT 463
            +E G + F+ ++
Sbjct: 507 LVEEGRKYFSEMS 519



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 66/315 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ SC+    +++GK+ H +  + G L  T+P+ N L+ MY++CG    A +LFD M ++
Sbjct: 265 MISSCSQVQDLNLGKEFHCYIKEHG-LEFTIPLTNALMDMYVKCGELLTARVLFDNMAQK 323

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
              SW  M+ G+ + G  + + ++   +P+K+   WN +ISG  +A + K A  LF++M 
Sbjct: 324 TLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ 383

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R                                   ++ D   +   + AC+ L AL+ 
Sbjct: 384 IRT----------------------------------IEPDKVTMVNCLSACSQLGALDV 409

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  IH +I  + L  D  LG++LV++Y KCG+   A QV   +  P   CL+        
Sbjct: 410 GIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEI--PQRNCLT-------- 459

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                W ++I G   +    +AL  F KM   G++ D  T   V
Sbjct: 460 ---------------------WTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGV 498

Query: 311 LSACSSLGFLEHGKQ 325
           LSAC   G +E G++
Sbjct: 499 LSACCHGGLVEEGRK 513



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 177/402 (44%), Gaps = 35/402 (8%)

Query: 88  KEKSLQLFNVMPQKNDFSWNMLIS--GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           K+   Q+ +    +N F+ + L++    +++ EL     +   +   N  +WN+ I  YV
Sbjct: 74  KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYV 133

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
            +G       L+K +   L   L+ D      ++  C                       
Sbjct: 134 ESGDIEGGFMLYKRML--LGGTLKPDNHTYPLLLKGCC---------------------- 169

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                      Y  C        VL    E D F  +A I+   +CG+++ A  VF+++ 
Sbjct: 170 ---------GQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSR 220

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V WNSMI+G +      EA+ ++ +M    V  +  T+  ++S+CS +  L  GK+
Sbjct: 221 VRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKE 280

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H +  + G+   + + +AL+D Y K G    A  LF  +     +   TM+  Y+  G 
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGF 340

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++ A+ I   +P KS++ WN++I G  Q     EAL LF  M    +  DK ++ + +SA
Sbjct: 341 LDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSA 400

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           C+ + +L++G  +   +    L  D  + T+LVD Y KCG I
Sbjct: 401 CSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNI 442


>gi|326519006|dbj|BAJ92663.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 547

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 203/435 (46%), Gaps = 46/435 (10%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
            G+  H   L  G+   ++    R++  Y R     +A  LFD MP R+  SW AM++G+
Sbjct: 104 AGRVDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDVVSWTAMLQGY 163

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
            ++G   ++  LF+ MP ++  SW +++ G+A+ G L+ AR +F+ MP RN + W  M+ 
Sbjct: 164 ARIGMMREARGLFDAMPARDFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVK 223

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y   G  +EA+ LF ++        Q +      +I  C     ++   ++   +    
Sbjct: 224 AYADQGHFQEAMELFNKMP-------QRNLHSWNIMISGCLRAGNVDEAVRLFERMP--- 273

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYANCGKMNDARRVF 261
            D ++V  +++V    + G  + A +  + M E  D    +A+I+ YAN G+MN+A+R+F
Sbjct: 274 -DRNAVSWTTMVTGLAQNGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLF 332

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D       V WN++I GY  N    E + LF  M R+ V  D +TL SVL    S   +E
Sbjct: 333 DSIPAKDLVSWNAIIHGYAKNKHKGEVMGLFLLMLRSAVSPDRTTLISVLVTSEST--VE 390

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G Q+HG A   G++ D                               T L N ++T+YS
Sbjct: 391 VG-QIHGLATTRGLLSD-------------------------------TSLGNALLTMYS 418

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             G +  A  +F+ +  K  I+W SM+   + +G    AL  F  M +   +    +  +
Sbjct: 419 RSGDLHSAWQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQMLQHGYKPSSTTFIA 478

Query: 442 VISACANISSLELGE 456
            +SAC++   ++ G 
Sbjct: 479 ALSACSHAGLVDKGR 493



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 163/372 (43%), Gaps = 82/372 (22%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +++ Y   G+  +A+ LF++MP+RN  SWN MI G ++ G+ +++++LF  MP +N  SW
Sbjct: 221 MVKAYADQGHFQEAMELFNKMPQRNLHSWNIMISGCLRAGNVDEAVRLFERMPDRNAVSW 280

Query: 107 NMLISGFAKAGELKTARTLFNDMPR-RNAIAWNSMIHCYVRNGFAREAVRLFKELNS-DL 164
             +++G A+ G +  AR  F+ MP  R+  AWN+MI  Y  +G   EA RLF  + + DL
Sbjct: 281 TTMVTGLAQNGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLFDSIPAKDL 340

Query: 165 VE---------------------------RLQCDAFILATVIGACADLAALEYGKQIHSH 197
           V                             +  D   L +V+      + +E G QIH  
Sbjct: 341 VSWNAIIHGYAKNKHKGEVMGLFLLMLRSAVSPDRTTLISVL--VTSESTVEVG-QIHGL 397

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
               GL  D+ LG++L+ +Y + GD +S                               A
Sbjct: 398 ATTRGLLSDTSLGNALLTMYSRSGDLHS-------------------------------A 426

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
            +VF    +   + W SM+  + ++   + AL  F +M ++G    ++T  + LSACS  
Sbjct: 427 WQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQMLQHGYKPSSTTFIAALSACSHA 486

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC--KLFSELKVYDTILLNT 375
           G ++ G+    H C   V               +RGM  +    KLF  L      +   
Sbjct: 487 GLVDKGRASRAH-CPPSV---------------QRGMLYEQWWGKLFQSLTAPLVQVREA 530

Query: 376 MITVYSSC-GRI 386
             + +S+C GR+
Sbjct: 531 TTSFWSTCLGRV 542



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 189/435 (43%), Gaps = 62/435 (14%)

Query: 57  PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLIS 111
           P     +FD  P  +  ++  +I+  ++ G   ++  LF+  P      + D +   ++ 
Sbjct: 43  PRSTRAVFDGTPHEDAVAYANLIDLHLRCGDLPRAEALFHAAPTAARGLRLDTA---MLD 99

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G+ KAG +  AR LF+ MP ++  AW  ++  Y R     EA RLF             D
Sbjct: 100 GYFKAGRVDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLF-------------D 146

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           A  +  V+   A                             ++  Y + G    A  + +
Sbjct: 147 AMPVRDVVSWTA-----------------------------MLQGYARIGMMREARGLFD 177

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M   D    + ++ GYA  G + +AR VFD+  + + V W  M+  Y       EA+ L
Sbjct: 178 AMPARDFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVKAYADQGHFQEAMEL 237

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F+KM +  +     +   ++S C   G ++   ++         +    + + L    ++
Sbjct: 238 FNKMPQRNL----HSWNIMISGCLRAGNVDEAVRLFERMPDRNAVSWTTMVTGL----AQ 289

Query: 352 RGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
            G  S A + F  +    DT   N MIT Y++ G++ +A+ +F ++P K L+SWN++I G
Sbjct: 290 NGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLFDSIPAKDLVSWNAIIHG 349

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            ++N    E + LF  M +  +  D+ +L SV+    + S++E+G Q+    T  GL SD
Sbjct: 350 YAKNKHKGEVMGLFLLMLRSAVSPDRTTLISVL--VTSESTVEVG-QIHGLATTRGLLSD 406

Query: 471 QIISTSLVDFYCKCG 485
             +  +L+  Y + G
Sbjct: 407 TSLGNALLTMYSRSG 421



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 123/291 (42%), Gaps = 49/291 (16%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL--SALISGYANCGKMNDARRVFDR 263
           D+V  ++L++L+ +CGD   A  + +            +A++ GY   G+++ ARR+FD 
Sbjct: 57  DAVAYANLIDLHLRCGDLPRAEALFHAAPTAARGLRLDTAMLDGYFKAGRVDHARRLFDG 116

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
               S   W  ++SGY       EA  LF  M                            
Sbjct: 117 MPVKSVGAWTRVVSGYCRARRVDEARRLFDAM---------------------------- 148

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
                       + DV+  +A+L  Y++ GM  +A  LF  +   D +    M+  Y+  
Sbjct: 149 -----------PVRDVVSWTAMLQGYARIGMMREARGLFDAMPARDFVSWTVMLQGYARR 197

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G + +A+ +F  MP +++++W  M+   +  G   EA++LF  M + +L     S   +I
Sbjct: 198 GMLREAREVFDQMPERNVVTWTVMVKAYADQGHFQEAMELFNKMPQRNLH----SWNIMI 253

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           S C    +++   ++F R+     D + +  T++V    + G + M   + 
Sbjct: 254 SGCLRAGNVDEAVRLFERMP----DRNAVSWTTMVTGLAQNGRVSMAREFF 300



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 24/169 (14%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ VG Q+H     +G+L+ T  + N LL MY R G+   A  +F  +  ++  +W +M+
Sbjct: 388 TVEVG-QIHGLATTRGLLSDT-SLGNALLTMYSRSGDLHSAWQVFKMIQEKDPITWTSMM 445

Query: 80  EGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
             F   G    +LQ F  M Q     +  ++   +S  + AG +   R            
Sbjct: 446 RAFANHGRASYALQAFAQMLQHGYKPSSTTFIAALSACSHAGLVDKGRA----------- 494

Query: 136 AWNSMIHC--YVRNGFAREAV--RLFKELNSDLVERLQCDAFILATVIG 180
              S  HC   V+ G   E    +LF+ L + LV+  +      +T +G
Sbjct: 495 ---SRAHCPPSVQRGMLYEQWWGKLFQSLTAPLVQVREATTSFWSTCLG 540


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 195/401 (48%), Gaps = 22/401 (5%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK-EKSLQLFNVMPQKND 103
           N+ +    R G+   A  +FD MPRR+  SWNA++    + G     + +LF+ MP +N 
Sbjct: 11  NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNV 70

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            SWN +++G    G+L  A   F   PRRN  +WN+M+   VR G   +A  LF E+   
Sbjct: 71  ISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMP-- 128

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
                Q +     T++   A    +   +++   +    L    V  ++++  Y +   F
Sbjct: 129 -----QRNVVSYTTMVDGLARRGEVARAREVFDAMPERNL----VSWAAMITGYVENAMF 179

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           + A ++   M + +    +A+I+GY   G +  ARR+FD       + WN+MI+GY+ N 
Sbjct: 180 DEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNG 239

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EA+ L   M R GV  D +TL ++L+ACS+L  L  G+  H  A K  +       +
Sbjct: 240 HGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCN 299

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           AL+  YSK G   ++  +F  LK+ D +  NT+I  Y+  G+ + A  +F  M  + LI 
Sbjct: 300 ALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIP 359

Query: 404 WN----SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
            +    SM+      G   ++L+LF      DL   K++++
Sbjct: 360 NDITILSMLSACGHVGRVNDSLELF------DLMSSKYAIS 394



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 138/310 (44%), Gaps = 32/310 (10%)

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK-MNDARRVFDRTTDTSSVMW 272
           +    + GD  +A +V + M   D    +AL++     G+ +  ARR+FD     + + W
Sbjct: 14  ITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISW 73

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           NS+++G +++ +   A   F +  R  V    ++  ++L+    LG ++    + G   +
Sbjct: 74  NSVVAGCLAHGDLDAASAYFARAPRRNV----ASWNAMLAGLVRLGRMDDAWALFGEMPQ 129

Query: 333 VGVID---------------------------DVIVASALLDTYSKRGMPSDACKLFSEL 365
             V+                            +++  +A++  Y +  M  +A KLF  +
Sbjct: 130 RNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAM 189

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
              + +    MIT Y   G +E A+ +F  +P K +ISWN+MI G   NG   EA+ L  
Sbjct: 190 PDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHI 249

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M +  ++ D  +L ++++AC+ ++ L  G    A  T   L+S      +L+  Y KCG
Sbjct: 250 IMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCG 309

Query: 486 FIKMDEYYLM 495
            +   E   M
Sbjct: 310 NVGESELVFM 319



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    +  G+  H     K +L S+    N L+ MY +CGN  ++ L+F  +
Sbjct: 263 LIAILTACSALALLRQGRSTHA-VATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNL 321

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             ++  SWN +I  + + G  +K++ LF+ M  +    ND +   ++S     G +  + 
Sbjct: 322 KIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSL 381

Query: 124 TLFNDMPRRNAIAWNSMIH-CYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF+ M  + AI+ ++  + C V    R G   +A    K++        + +  +   +
Sbjct: 382 ELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMP------FEAERNVWGAL 435

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GA      ++ G ++ + +LV      S     L N+Y   G +   N+V   MKE
Sbjct: 436 LGASKTHGNVQLG-ELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMKE 491


>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
 gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
          Length = 623

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 223/520 (42%), Gaps = 104/520 (20%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ID    LL+      S+  G+++H   +  G+   T  + N L+QMY RCG+  DA   F
Sbjct: 2   IDTYEALLKQYGNSKSLADGRRVHSQMISNGLDGDTY-LGNLLVQMYGRCGSLDDARAAF 60

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW-------------- 106
             + +RN FSW  +I   ++ G   + L+L   M     + N  ++              
Sbjct: 61  RGIHQRNVFSWTILISLLVQNGEASEGLELLKFMDLEGTEANKITFISLLGACSVTGDLS 120

Query: 107 ---------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                                N L++ +     L  AR +F  M  R+ ++W  +I  Y 
Sbjct: 121 LGKKIHERVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYA 180

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
             G+  EA++L++ +  +     + DA  L +V+ ACA L  L  GK IH  I+ +G++ 
Sbjct: 181 HAGYPLEALQLYRRMEQEFS---RPDAVTLISVLEACASLRTLVEGKTIHERIVASGVET 237

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  +G+++V+ YGKC   + A QV + + + D  C                         
Sbjct: 238 DVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVC------------------------- 272

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
                 WN+MI  Y  N+ + +A  L+ +M  N +  +  TL ++L +CSS   +E G  
Sbjct: 273 ------WNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERGSS 326

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H  A   G +    V +AL++ Y+K G   +A ++F E                     
Sbjct: 327 LHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEA-------------------- 366

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                    T    ++I+WN+MIV  +Q    +EAL ++  MN+  ++    +  +V++ 
Sbjct: 367 ---------TNRTTNVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAV 417

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           CAN      G +V +R    G  SD ++  SL+  Y  CG
Sbjct: 418 CANFGDFTTGREVHSRSLATGCCSD-VVQNSLICLYGGCG 456



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/490 (23%), Positives = 209/490 (42%), Gaps = 108/490 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C+    + +GK++H     KG L + +   N LL MY  C +  +A L+F+ M  R
Sbjct: 109 LLGACSVTGDLSLGKKIHERVRAKG-LETDIITGNALLNMYTTCDSLDEARLVFERMVFR 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           +  SW  +I  +   G+  ++LQL+  M Q+                             
Sbjct: 168 DVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIH 227

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     + F    ++S + K   +  AR +F+ +  ++ + WN+MI  Y +N    
Sbjct: 228 ERIVASGVETDVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEE 287

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A  L+ E+   +  +++ +   L T++ +C+    +E G  +H      G         
Sbjct: 288 KAFALYLEM---VENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAARG--------- 335

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSS 269
                      + S   V+N           ALI+ YA CG + +A RVF   T+  T+ 
Sbjct: 336 -----------YLSHTSVVN-----------ALINMYAKCGSLENATRVFIEATNRTTNV 373

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + WN+MI      + + EAL ++H+M + G+     T  +VL+ C++ G    G++VH  
Sbjct: 374 ITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFGDFTTGREVHSR 433

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           +   G   DV+                                 N++I +Y  CG +E A
Sbjct: 434 SLATGCCSDVV--------------------------------QNSLICLYGGCGNLEAA 461

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +  F ++ +K+++SW+S++   ++NG    A +LF  MN+  +  +  +  SV+ AC++ 
Sbjct: 462 QTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHA 521

Query: 450 SSLELGEQVF 459
              + G   F
Sbjct: 522 GLADEGWSYF 531



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 169/382 (44%), Gaps = 65/382 (17%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N+L+  + + G L  AR  F  + +RN  +W  +I   V+NG A E + L K ++   +E
Sbjct: 41  NLLVQMYGRCGSLDDARAAFRGIHQRNVFSWTILISLLVQNGEASEGLELLKFMD---LE 97

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             + +     +++GAC+    L  GK+IH  +   GL+ D + G++L+N+Y         
Sbjct: 98  GTEANKITFISLLGACSVTGDLSLGKKIHERVRAKGLETDIITGNALLNMY--------- 148

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                   C  +++AR VF+R      V W  +IS Y       
Sbjct: 149 ----------------------TTCDSLDEARLVFERMVFRDVVSWTIIISAYAHAGYPL 186

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL L+ +M +     DA TL SVL AC+SL  L  GK +H      GV  DV V +A++
Sbjct: 187 EALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDVFVGTAVV 246

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y K                               C  ++DA+ +F  + +K ++ WN+
Sbjct: 247 SFYGK-------------------------------CEAVDDARQVFDRIMDKDIVCWNA 275

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI   +QN    +A  L+  M +  +R +  +L +++ +C++   +E G  +       G
Sbjct: 276 MIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAARG 335

Query: 467 LDSDQIISTSLVDFYCKCGFIK 488
             S   +  +L++ Y KCG ++
Sbjct: 336 YLSHTSVVNALINMYAKCGSLE 357



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 77/357 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C +  ++  GK +H   +  G+  + + +   ++  Y +C    DA  +FD +
Sbjct: 207 LISVLEACASLRTLVEGKTIHERIVASGV-ETDVFVGTAVVSFYGKCEAVDDARQVFDRI 265

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW----------------- 106
             ++   WNAMI  + +   +EK+  L+  M +     ND +                  
Sbjct: 266 MDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERGS 325

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRR--NAIAWNSMIHCYVR 146
                             N LI+ +AK G L+ A  +F +   R  N I WN+MI    +
Sbjct: 326 SLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTNVITWNTMIVANAQ 385

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
                EA++++  +N    E ++       TV+  CA+      G+++HS  L  G   D
Sbjct: 386 EDLNLEALQIYHRMNQ---EGIKASDVTYGTVLAVCANFGDFTTGREVHSRSLATGCCSD 442

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            V+ +SL+ LYG                                CG +  A+  F+    
Sbjct: 443 -VVQNSLICLYG-------------------------------GCGNLEAAQTAFESVAS 470

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            + V W+S+++ Y  N E+  A  LF  M ++GVL +  T  SVL ACS  G  + G
Sbjct: 471 KNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEG 527


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 195/418 (46%), Gaps = 73/418 (17%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL+ Y+R G   DA+ LF +MP RN  S+  ++ G +  G   ++ +LF+ MP ++  +W
Sbjct: 118 LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAW 177

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++SG+ +AG +  AR LF++MP+RN ++W +MI  Y +NG     V L ++L   + E
Sbjct: 178 TAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG----EVNLARKLFEVMPE 233

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           R                                      + V  ++++  Y + G    A
Sbjct: 234 R--------------------------------------NEVSWTAMLVGYIQAGHVEDA 255

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            ++ N M E      +A++ G+   G ++ A+ VF++  +     W++MI  Y  N    
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL  F +M   GV  +  ++ S+L+ C++L  L++G++VH    +     DV   SAL 
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL- 374

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                         IT+Y  CG ++ AK +F T   K ++ WNS
Sbjct: 375 ------------------------------ITMYIKCGNLDKAKRVFHTFEPKDIVMWNS 404

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           MI G +Q+G   +AL +F +M    +  D  +    ++AC+    ++ G ++F  +T+
Sbjct: 405 MITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTV 462



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 181/383 (47%), Gaps = 25/383 (6%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLV 165
           N  I+  A+AG ++ AR  F  MP R   ++N+++  Y RN     A+ LF+ + S DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 166 ER---LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                +   +    T+  A A LA++ +   + S              +SL+  Y + G 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSF-------------TSLLRGYVRHGL 127

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A ++   M E +    + L+ G  + G++N+ARR+FD   D   V W +M+SGY   
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
              TEA  LF +M +  V+    +  +++S  +  G +   +++     +V    + +  
Sbjct: 188 GRITEARALFDEMPKRNVV----SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSW 239

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +A+L  Y + G   DA +LF+ +  +     N M+  +   G ++ AK +F  M  +   
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +W++MI    QN   +EAL  F  M    +R +  S+ S+++ CA ++ L+ G +V A +
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
                D D    ++L+  Y KCG
Sbjct: 360 LRCSFDMDVFAVSALITMYIKCG 382



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 69/290 (23%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y + G  T+A  LFDEMP+RN  SW AMI G+ + G    + +LF VMP++N+ SW
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSW 239

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIA------------------------------ 136
             ++ G+ +AG ++ A  LFN MP     A                              
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 137 -WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W++MI  Y +N F  EA+  F+E+   L   ++ +   + +++  CA LA L+YG+++H
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREM---LWRGVRPNYPSVISILTVCAALAVLDYGREVH 356

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN----- 250
           + +L    D D    S+L+ +Y KCG+ + A +V +  +  D    +++I+GYA      
Sbjct: 357 AAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGE 416

Query: 251 ------------------------------CGKMNDARRVFDRTTDTSSV 270
                                          GK+ + R +F+  T  SS+
Sbjct: 417 QALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSI 466



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N  I   +  G IE A+  F  MP ++  S+N+++ G  +N  P  AL LF  M   DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDL- 79

Query: 434 MDKFSLASVISACANISSLELGEQVF----ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                     S  A IS L L  Q      A +  I      +  TSL+  Y + G +
Sbjct: 80  ---------ASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLL 128


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 216/480 (45%), Gaps = 110/480 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    ++  G++LH H +  G   + +P+   LLQMY +CG+  DA  +F+ M  +
Sbjct: 36  LVAACTKLQALEEGRRLHEHLIITG-FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK 94

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------------------- 98
           + F+W+++I  + + G  E ++ L+  M                                
Sbjct: 95  DLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIH 154

Query: 99  --------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                   PQ +D   + L++ + K  E+  AR +F  M  RN  ++ +MI  YV+ G  
Sbjct: 155 QRILASKVPQ-DDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEH 213

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LF  ++   VE ++ +A+  AT++GA   L  LE G+++H H+   G D + V+ 
Sbjct: 214 AEALELFSRMSK--VEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 271

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV +                               Y  CG   +AR+VFD  T  + +
Sbjct: 272 NALVTM-------------------------------YGKCGSPVEARKVFDSMTARNVI 300

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W SMI+ Y  +    EAL LF +M    V     + +S L+AC+ LG L+ G+++H   
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRV 357

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +  +      AS  ++T                          +++++Y+ CG ++DA+
Sbjct: 358 VEANL------ASPQMET--------------------------SLLSMYARCGSLDDAR 385

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M  +   S N+MI   +Q+G   +AL ++  M +  +  D  +  SV+ AC++ S
Sbjct: 386 RVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTS 445



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 208/443 (46%), Gaps = 78/443 (17%)

Query: 52  MRCGNPTDALLLFDEMPRRNC----FSWNAMIEGFMKLGHKEKSLQLFN---VMPQKNDF 104
           +R G P  AL L+ EM  R      F   +++    KL   E+  +L     +   + D 
Sbjct: 6   VREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDI 65

Query: 105 SWNM-LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                L+  +AK G L  A+ +F  M  ++  AW+S+I  Y R G    AV L++ +   
Sbjct: 66  PLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRM--- 122

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           + E ++ +    A  +G CA +A L  G+ IH  IL + +  D VL  SL+N+Y K    
Sbjct: 123 IAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLK---- 178

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                      C +M +AR+VF+     +   + +MIS Y+   
Sbjct: 179 ---------------------------CDEMVEARKVFEGMKARNVRSYTAMISAYVQAG 211

Query: 284 EDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
           E  EAL LF +M +   +E +A T A++L A   LG LE G++VH H           +A
Sbjct: 212 EHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH-----------LA 260

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           S   DT                    + ++ N ++T+Y  CG   +A+ +F +M  +++I
Sbjct: 261 SRGFDT--------------------NVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW SMI   +Q+G+P EAL+LF    ++D+     S +S ++ACA + +L+ G ++  RV
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLF---KRMDVEPSGVSFSSALNACALLGALDEGREIHHRV 357

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
               L S Q + TSL+  Y +CG
Sbjct: 358 VEANLASPQ-METSLLSMYARCG 379



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 67/291 (23%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H H   +G  ++ + + N L+ MY +CG+P +A  +FD M  RN  SW +MI  + 
Sbjct: 252 GRKVHRHLASRG-FDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYA 310

Query: 84  KLGHKEKSLQLF---NVMPQKNDFSWNM-------------------------------- 108
           + G+ +++L LF   +V P    FS  +                                
Sbjct: 311 QHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQMETS 370

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+S +A+ G L  AR +FN M  R+A + N+MI  + ++G  ++A+R+++++     E +
Sbjct: 371 LLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQ---EGI 427

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS------------LVNL 216
             D     +V+ AC+           H+ ++ +  DF   L               +V++
Sbjct: 428 PADGITFVSVLVACS-----------HTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDV 476

Query: 217 YGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMND----ARRVFD 262
            G+ G    A +++  M  + D      L+SG    G ++     AR+VF+
Sbjct: 477 LGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFE 527



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 31/210 (14%)

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           MI+  +      +AL L+ +M   G++ D   + S+++AC+ L  LE G+++H H    G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
              D+ + +ALL  Y+K G   DA ++F  +++ D    +++I  Y+  GR E A  ++R
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            M              +++   P                 +  + A  +  CA+++ L  
Sbjct: 121 RM--------------IAEGVEP-----------------NVVTFACALGGCASVAGLAD 149

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           G  +  R+    +  D ++  SL++ Y KC
Sbjct: 150 GRAIHQRILASKVPQDDVLQDSLLNMYLKC 179


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 181/357 (50%), Gaps = 32/357 (8%)

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F  N  +  ++  G +  AR LF++ P R+ ++WN++I  YVR+G  REA+ LF  L  D
Sbjct: 157 FVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAED 216

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               ++ D   +   +  CA +  LE GK++H  +   G+     L ++++++Y KCG  
Sbjct: 217 -GNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSL 275

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             AN V   +        + +I G+A  G M DAR +FD   +     WN++++GY+ N 
Sbjct: 276 ELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNK 335

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +  EA+ LFH+M+++ V  +  T+ ++LSACS LG LE G  VH +  +  +   V + +
Sbjct: 336 QGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGT 395

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           +L+D Y+K G    A  +F+E+ V + +                               +
Sbjct: 396 SLVDMYAKCGNIKKAICVFNEIPVQNAL-------------------------------T 424

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           W SMI GL+ +G   EA++ F  M  L L+ D+ +   V+SAC +   +E G Q F+
Sbjct: 425 WTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFS 481



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 135/254 (53%), Gaps = 2/254 (0%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D F ++A +  ++  G M  ARR+FD +     V WN++I GY+ +    EAL LF ++ 
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214

Query: 297 RNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
            +G  V  D  T+   +S C+ +G LE GK++H      GV   V + +A++D Y K G 
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A  +F  +     +   TMI  ++  G +EDA+ +F  MP + +  WN+++ G  QN
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               EA+ LF  M K  +  ++ ++ +++SAC+ + +LE+G  V   +    L     + 
Sbjct: 335 KQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALG 394

Query: 475 TSLVDFYCKCGFIK 488
           TSLVD Y KCG IK
Sbjct: 395 TSLVDMYAKCGNIK 408



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 34/250 (13%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA+++ ++K G  E +  +F  +  +   SW  +I G A+ G ++ AR LF++MP R+  
Sbjct: 263 NAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVF 322

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            WN+++  YV+N   +EA+ LF E+    V+    +   +  ++ AC+ L ALE G  +H
Sbjct: 323 PWNALMAGYVQNKQGKEAIALFHEMQKSKVDP---NEITMVNLLSACSQLGALEMGMWVH 379

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            +I  + L     LG+SLV++Y KCG+   A  V N +   +    +++I G AN G  +
Sbjct: 380 HYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHAD 439

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A   F R  D                                G+  D  T   VLSAC 
Sbjct: 440 EAIEYFQRMIDL-------------------------------GLQPDEITFIGVLSACC 468

Query: 316 SLGFLEHGKQ 325
             G +E G+Q
Sbjct: 469 HAGLVEAGRQ 478



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 111/237 (46%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C+   ++ +G  +H H++ +  L+ ++ +   L+ MY +CGN   A+ +F+E+
Sbjct: 359 MVNLLSACSQLGALEMGMWVH-HYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEI 417

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P +N  +W +MI G    GH +++++ F  M     Q ++ ++  ++S    AG ++  R
Sbjct: 418 PVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGR 477

Query: 124 TLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M       R    ++ MI    R G   EA +L   +  D       DA +   +
Sbjct: 478 QFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMD------PDAVVWGAL 531

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             AC     +  G++  +  LV     DS +   L N+Y +      A++V  MM+ 
Sbjct: 532 FFACRMHGNITLGEKA-AMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRH 587



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 34/208 (16%)

Query: 285 DTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           D   L L+  +  +G    D  T   ++ AC+ L +  +G  V GH  K+G   DV V +
Sbjct: 101 DRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVN 160

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           A +  +S RG  + A +LF E  V D +  NT+I                          
Sbjct: 161 AAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIG------------------------- 195

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFAR 461
                 G  ++G P EAL+LF  + +    +R D+ ++   +S CA +  LELG+++   
Sbjct: 196 ------GYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEF 249

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           V   G+     +  +++D Y KCG +++
Sbjct: 250 VDNKGVRCTVRLMNAVMDMYVKCGSLEL 277


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/521 (26%), Positives = 231/521 (44%), Gaps = 111/521 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A ++ SC     I +G QL  H LK G L + +  AN L+ M+  CG+  +A  +F+EM
Sbjct: 163 IALVISSCGFLMDIILGHQLLGHALKFG-LETKVSAANSLIFMFGGCGDINEACSIFNEM 221

Query: 68  PRRNCFSWNAMIEG---------------FMKLGHKEKSLQ----LFNVMPQKNDFSW-- 106
             R+  SWN++I                 +M+L H+E +      L ++    +   W  
Sbjct: 222 NERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGK 281

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+S ++ AG  K A  +F  MP R+ I+WNSM+ CYV++G
Sbjct: 282 GVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDG 341

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A+++F E+   L  + + +     + + AC D      GK +H  ++V GL  + +
Sbjct: 342 RCLCALKVFAEM---LWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELI 398

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++L+  YGKC                                KM +A++VF R     
Sbjct: 399 IGNTLITFYGKCH-------------------------------KMAEAKKVFQRMPKLD 427

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRR---NGVLEDASTLASVLSAC-SSLGFLEHGK 324
            V WN++I G+ +N E  EA+  F  MR    +GV  D  T+ ++L +C +    +++G 
Sbjct: 428 KVTWNALIGGFANNAELNEAVAAFKLMREGSTSGV--DYITIVNILGSCLTHEDLIKYGI 485

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H H    G   D  V S+L                               IT+Y+ CG
Sbjct: 486 PIHAHTVVTGFDLDQHVQSSL-------------------------------ITMYAKCG 514

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            +  + +IF  +  K+   WN++I   ++ G   EAL L   M    +  D+F+ ++ +S
Sbjct: 515 DLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALS 574

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             A+++ LE G+Q+      +G + D  I  + +D Y KCG
Sbjct: 575 VAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCG 615



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 209/475 (44%), Gaps = 105/475 (22%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-------------- 95
           MY + G    A L+FD M  RN  SWN M+ G++++G   +++  F              
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 96  -----------NVMPQK---------------NDFSWNMLISGFAKAGELKTARTLFNDM 129
                      ++M ++               + F     +  +A  G +  A+ +FN+M
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           P RN ++W S++  Y  NG  +E +  +K +     E + C+   +A VI +C  L  + 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRH---EGICCNENNIALVISSCGFLMDII 177

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G Q+  H L  GL+      +SL+ ++G CGD                           
Sbjct: 178 LGHQLLGHALKFGLETKVSAANSLIFMFGGCGD--------------------------- 210

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
               +N+A  +F+   +  ++ WNS+IS    N    E+   FH MR      + +TL+ 
Sbjct: 211 ----INEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSI 266

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +LS C S+ +L+ GK VHG A K G                   + S+ C          
Sbjct: 267 LLSICGSVDYLKWGKGVHGLAVKYG-------------------LESNIC---------- 297

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             L NT+++VYS  GR +DA+ IFR MP + LISWNSM+    Q+G  + AL +F  M  
Sbjct: 298 --LCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLW 355

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +   ++  +  S ++AC +      G+ +   V ++GL  + II  +L+ FY KC
Sbjct: 356 MKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKC 410



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/531 (22%), Positives = 219/531 (41%), Gaps = 108/531 (20%)

Query: 8   LARLLQSCNTHHSI-HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A L+ +CN    +   G Q H   +K G++     +    +  Y   G  ++A  +F+E
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVF-VGTSFVHFYASYGIVSNAQKMFNE 119

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSW-------------- 106
           MP RN  SW +++  +   G K++ +  +  M        +N+ +               
Sbjct: 120 MPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILG 179

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              N LI  F   G++  A ++FN+M  R+ I+WNS+I    +N
Sbjct: 180 HQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQN 239

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
               E+ R F  +   LV   + +   L+ ++  C  +  L++GK +H   +  GL+ + 
Sbjct: 240 TLHEESFRYFHWMR--LVHE-EINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNI 296

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            L ++L+++Y                               ++ G+  DA  +F R  + 
Sbjct: 297 CLCNTLLSVY-------------------------------SDAGRSKDAELIFRRMPER 325

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             + WNSM++ Y+ +     AL +F +M       +  T  S L+AC    F  +GK +H
Sbjct: 326 DLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILH 385

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G    +G+ D++I+ + L+  Y K                               C ++ 
Sbjct: 386 GFVVVLGLQDELIIGNTLITFYGK-------------------------------CHKMA 414

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR-MDKFSLASVISAC 446
           +AK +F+ MP    ++WN++I G + N    EA+  F  M +     +D  ++ +++ +C
Sbjct: 415 EAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSC 474

Query: 447 ANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
                L + G  + A   + G D DQ + +SL+  Y KCG +    Y   Q
Sbjct: 475 LTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQ 525



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 32/241 (13%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+  G++N A+ VFDR ++ +   WN M+SGY+      EA+L F  +   G+      +
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 308 ASVLSACSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           AS+++AC+    + + G Q HG A K G+I DV V ++ +  Y+  G+ S+A K+F+E  
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNE-- 119

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                                        MP+++++SW S++V  S NGS  E ++ +  
Sbjct: 120 -----------------------------MPDRNVVSWTSLMVSYSDNGSKKEVINTYKR 150

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M    +  ++ ++A VIS+C  +  + LG Q+       GL++    + SL+  +  CG 
Sbjct: 151 MRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGD 210

Query: 487 I 487
           I
Sbjct: 211 I 211



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +YS  GRI  A+ +F  M  ++  SWN M+ G  + GS +EA+  F ++  + ++   F 
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 439 LASVISACANISSL--ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +AS+++AC N SS+  + G Q        GL  D  + TS V FY   G +
Sbjct: 61  IASLVTAC-NKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIV 110


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 228/516 (44%), Gaps = 105/516 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
            L+ +C++  S+  G+++H H L        + + N +L MY +CG+  +A  +FD MP 
Sbjct: 103 HLINACSSLRSLEHGRKIHRHMLTCN-YQPDMILQNHILSMYGKCGSLKEARNMFDSMPL 161

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------------- 100
           +N  SW +MI G+ + G ++ ++ L+  M +                             
Sbjct: 162 KNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQL 221

Query: 101 -----KNDF-----SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                K++F     + N LIS + K  ++  A  +F+ +  ++ I+W SMI  + + G+ 
Sbjct: 222 HAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+  F+E+ S  V   Q + F+  +   AC+ L   + G+QIH   +  GL  D   G
Sbjct: 282 LEALCHFREMLSQSV--YQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAG 339

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
            SL ++Y KC                               G +  AR VF        V
Sbjct: 340 CSLCDMYAKC-------------------------------GFLESARTVFYHIEKPDLV 368

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++I+G+ S +   E+   F +MR  G++ +  T+ S+L ACS    L HG QVH + 
Sbjct: 369 AWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYI 428

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G   D+ V ++LL  YSK                               C  + DA 
Sbjct: 429 VKMGFNLDIPVCNSLLSMYSK-------------------------------CSNLNDAL 457

Query: 391 HIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +F  + NK+ ++SWN+++    Q     E L L   M    ++ D  +L +V+ +   I
Sbjct: 458 QVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQI 517

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +S E+G Q+   +   GL+ D  +S +L++ Y KCG
Sbjct: 518 ASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCG 553



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/534 (23%), Positives = 241/534 (45%), Gaps = 120/534 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC+      + +QLH H LK     + L   N L+ MY +     DA+ +F  +  +
Sbjct: 205 IVKSCSGLDDFKLARQLHAHVLKSE-FGADLIAQNALISMYTKFSQMADAINVFSRIIIK 263

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------------ 112
           +  SW +MI GF +LG++ ++L  F  M  ++ +  N  + G                  
Sbjct: 264 DLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQI 323

Query: 113 ----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                                 +AK G L++ART+F  + + + +AWN++I  +     A
Sbjct: 324 HGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNA 383

Query: 151 REAVRLFKEL-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           +E+   F ++ ++ LV     D  +L +++ AC++   L +G Q+HS+I+  G + D  +
Sbjct: 384 KESSSFFSQMRHTGLVPN---DVTVL-SLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV 439

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            +SL+++Y K                               C  +NDA +VF+   + + 
Sbjct: 440 CNSLLSMYSK-------------------------------CSNLNDALQVFEDIGNKAD 468

Query: 270 VM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ WN++++  +  N+  E L L   M  + +  D  TL +VL +   +   E G Q+H 
Sbjct: 469 IVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHC 528

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G+  D+ V++AL++ Y+K                               CG +E 
Sbjct: 529 FIMKSGLNLDISVSNALINMYTK-------------------------------CGSLEC 557

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F ++ N  +ISW+S+IVG +Q G   EA +LF  M  L ++ ++ +   +++AC++
Sbjct: 558 ARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSH 617

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKCGFIKMDEYYLMQ 496
           I  +E G +++       +  D  IS +      +VD   + G + + E ++ Q
Sbjct: 618 IGMVEEGLKLYRT-----MQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQ 666



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 109/278 (39%), Gaps = 73/278 (26%)

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           + E  +A  +F K   + +   + T   +++ACSSL  LEHG+++H H        D+I+
Sbjct: 78  HREALKAFDIFQKCSSSPL--KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMIL 135

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS-------------------- 381
            + +L  Y K G   +A  +F  + + + +   +MI+ YS                    
Sbjct: 136 QNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 382 ------------SCGRIEDAK-------HIFRTMPNKSLISWNSMI-------------- 408
                       SC  ++D K       H+ ++     LI+ N++I              
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 409 -----------------VGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANIS 450
                             G SQ G  +EAL  F  M ++   + ++F   S  SAC+ + 
Sbjct: 256 VFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLL 315

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             + G Q+       GL SD     SL D Y KCGF++
Sbjct: 316 EPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLE 353



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 93/198 (46%), Gaps = 10/198 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L S     S  VG Q+H   +K G LN  + ++N L+ MY +CG+   A  +FD +
Sbjct: 507 LTNVLVSSGQIASYEVGSQIHCFIMKSG-LNLDISVSNALINMYTKCGSLECARKMFDSI 565

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SW+++I G+ + G  +++ +LF  M     + N+ ++  +++  +  G ++   
Sbjct: 566 GNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGL 625

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ--CDAFILATVIGA 181
            L+  M     I+  +  HC         A  L  ++  D + ++    D  +  T++ A
Sbjct: 626 KLYRTMQEDYRIS-PTKEHCSCMVDLLARAGCL--DVAEDFIRQMPFVPDVVVWKTLLAA 682

Query: 182 CADLAALEYGKQIHSHIL 199
           C     LE GK+   ++L
Sbjct: 683 CKVHGNLEVGKRAAENVL 700


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 217/456 (47%), Gaps = 77/456 (16%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + R+LQ+C    +++  KQ+H +  + G L+S + + N L+ MY + G    A  +FD M
Sbjct: 778  IVRVLQACGKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKNGKLELARRVFDSM 836

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              RN  SWN+MI  +  LG    +  LF                      EL+++     
Sbjct: 837  ENRNTSSWNSMISSYAALGFLNDAWSLFY---------------------ELESS----- 870

Query: 128  DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            DM + + + WN ++  +  +G+  E + + + +     E  + ++  + +V+ A ++L  
Sbjct: 871  DM-KPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG---EGFKPNSSSMTSVLQAISELGF 926

Query: 188  LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
            L  GK+ H ++L NG D D  +G+SL+++Y K     SA  V + MK  + F  ++L+SG
Sbjct: 927  LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSG 986

Query: 248  YANCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
            Y+  G   DA R+ ++          V WN MISGY                 R   + +
Sbjct: 987  YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA-----------MWGCARKAFMPN 1035

Query: 304  ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
            ++++  +L AC+SL  L+ GK++H  + + G I+DV VA+AL+D YSK            
Sbjct: 1036 SASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK------------ 1083

Query: 364  ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                                  +++A  +FR + NK+L SWN MI+G +  G   EA+ +
Sbjct: 1084 -------------------SSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISV 1124

Query: 424  FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            F  M K+ +  D  +  +++SAC N   +  G + F
Sbjct: 1125 FNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYF 1160



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 193/390 (49%), Gaps = 26/390 (6%)

Query: 109  LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
            L++ + +   L+ A  +F++MP   A+ WN  I   +++   ++ V LF+++       L
Sbjct: 715  LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSF---L 771

Query: 169  QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
            + +   +  V+ AC  + AL   KQIH ++   GLD D  L + L+++Y K G    A +
Sbjct: 772  KAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARR 831

Query: 229  VLNMMKEPDDFCLSALISGYANCGKMNDARRVF------DRTTDTSSVMWNSMISGYISN 282
            V + M+  +    +++IS YA  G +NDA  +F      D   D   V WN ++SG+  +
Sbjct: 832  VFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDI--VTWNCLLSGHFLH 889

Query: 283  NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
                E L +  +M+  G   ++S++ SVL A S LGFL  GK+ HG+  + G   DV V 
Sbjct: 890  GYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVG 949

Query: 343  SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-- 400
            ++L+D Y K      A  +F  +K  +    N++++ YS  G  EDA  +   M  +   
Sbjct: 950  TSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 1009

Query: 401  --LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
              L++WN MI G +  G   +A              +  S+  ++ ACA++S L+ G+++
Sbjct: 1010 PDLVTWNGMISGYAMWGCARKA-----------FMPNSASITCLLRACASLSLLQKGKEI 1058

Query: 459  FARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
                   G   D  ++T+L+D Y K   +K
Sbjct: 1059 HCLSIRNGFIEDVFVATALIDMYSKSSSLK 1088



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 180/393 (45%), Gaps = 41/393 (10%)

Query: 98  MPQK--NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN-GFAREAV 154
           +PQK   D +   LIS +   G+  +A  +F     RN + WNS +  +  + G     +
Sbjct: 600 LPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVL 659

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            +FKEL+   V     D+ + +  +  C  +  +  G +IH  ++  G D D  L  +L+
Sbjct: 660 EVFKELHGKGV---VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALM 716

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           N YG+                               C  +  A +VF    +  +++WN 
Sbjct: 717 NFYGR-------------------------------CWGLEKANQVFHEMPNPEALLWNE 745

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
            I   + + +  + + LF KM+ + +  + +T+  VL AC  +G L   KQ+HG+  + G
Sbjct: 746 AIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFG 805

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  DV + + L+  YSK G    A ++F  ++  +T   N+MI+ Y++ G + DA  +F 
Sbjct: 806 LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY 865

Query: 395 TMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            + +      +++WN ++ G   +G   E L++   M     + +  S+ SV+ A + + 
Sbjct: 866 ELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELG 925

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
            L +G++    V   G D D  + TSL+D Y K
Sbjct: 926 FLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVK 958



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 176/442 (39%), Gaps = 122/442 (27%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            +  +LQ+ +    +++GK+ H + L+ G  +  + +   L+ MY++  +   A  +FD M
Sbjct: 914  MTSVLQAISELGFLNMGKETHGYVLRNG-FDCDVYVGTSLIDMYVKNHSLXSAQAVFDNM 972

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
              RN F+WN+++ G+   G  E +L+L N M +   K D  +WN +ISG+A  G    AR
Sbjct: 973  KNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG---CAR 1029

Query: 124  TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
              F  MP   +I       C +R                                  ACA
Sbjct: 1030 KAF--MPNSASIT------CLLR----------------------------------ACA 1047

Query: 184  DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
             L+ L+ GK+IH   + NG   D  + ++L+++Y K                        
Sbjct: 1048 SLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSS--------------------- 1086

Query: 244  LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                      + +A +VF R  + +   WN MI G+       EA+ +F++M++ GV  D
Sbjct: 1087 ----------LKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPD 1136

Query: 304  ASTLASVLSACSSLGFLEHGKQVHG-------------HAC-------KVGVID---DVI 340
            A T  ++LSAC + G +  G +                H C       + G +D   D+I
Sbjct: 1137 AITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLI 1196

Query: 341  VASALLDTYSKRGMPSDACKLFSELKVYDTILLN-------------TMITVYSSCGRIE 387
                L    +  G    +C++   L   +T   N              M+ +YS   R E
Sbjct: 1197 HTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWE 1256

Query: 388  DAKHIFRTM-----PNKSLISW 404
            D  H+   M      N+ + SW
Sbjct: 1257 DMDHLRELMGAAGVRNRQVWSW 1278



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 36/265 (13%)

Query: 230 LNMMKEPDDFCLSA----LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           L M+K P  +   A    LIS Y   G    A  VF      + + WNS +  + S+   
Sbjct: 595 LVMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGS 654

Query: 286 TEALL-LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              +L +F ++   GV+ D+   +  L  C+ +  +  G ++HG   K G   DV +  A
Sbjct: 655 LHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCA 714

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L++ Y +                               C  +E A  +F  MPN   + W
Sbjct: 715 LMNFYGR-------------------------------CWGLEKANQVFHEMPNPEALLW 743

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N  I+   Q+    + ++LF  M    L+ +  ++  V+ AC  + +L   +Q+   V  
Sbjct: 744 NEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFR 803

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKM 489
            GLDSD  +   L+  Y K G +++
Sbjct: 804 FGLDSDVSLCNPLISMYSKNGKLEL 828


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 195/418 (46%), Gaps = 73/418 (17%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL+ Y+R G   DA+ LF +MP RN  S+  ++ G +  G   ++ +LF+ MP ++  +W
Sbjct: 118 LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAW 177

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++SG+ +AG +  AR LF++MP+RN ++W +MI  Y +NG     V L ++L   + E
Sbjct: 178 TAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG----EVNLARKLFEVMPE 233

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           R                                      + V  ++++  Y + G    A
Sbjct: 234 R--------------------------------------NEVSWTAMLVGYIQAGHVEDA 255

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            ++ N M E      +A++ G+   G ++ A+ VF++  +     W++MI  Y  N    
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLM 315

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL  F +M   GV  +  ++ S+L+ C++L  L++G++VH    +     DV   SAL 
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL- 374

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                         IT+Y  CG ++ AK +F T   K ++ WNS
Sbjct: 375 ------------------------------ITMYIKCGNLDKAKRVFHTFEPKDIVMWNS 404

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           MI G +Q+G   +AL +F +M    +  D  +    ++AC+    ++ G ++F  +T+
Sbjct: 405 MITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTV 462



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 181/383 (47%), Gaps = 25/383 (6%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLV 165
           N  I+  A+AG ++ AR  F  MP R   ++N+++  Y RN     A+ LF+ + S DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 166 ER---LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                +   +    T+  A A LA++ +   + S              +SL+  Y + G 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSF-------------TSLLRGYVRHGL 127

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A ++   M E +    + L+ G  + G++N+ARR+FD   D   V W +M+SGY   
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
              TEA  LF +M +  V+    +  +++S  +  G +   +++     +V    + +  
Sbjct: 188 GRITEARALFDEMPKRNVV----SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSW 239

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +A+L  Y + G   DA +LF+ +  +     N M+  +   G ++ AK +F  M  +   
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDG 299

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +W++MI    QN   +EAL  F  M    +R +  S+ S+++ CA ++ L+ G +V A +
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
                D D    ++L+  Y KCG
Sbjct: 360 LRCSFDMDVFAVSALITMYIKCG 382



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 69/290 (23%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y + G  T+A  LFDEMP+RN  SW AMI G+ + G    + +LF VMP++N+ SW
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSW 239

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIA------------------------------ 136
             ++ G+ +AG ++ A  LFN MP     A                              
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDG 299

Query: 137 -WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W++MI  Y +N F  EA+  F+E+   L   ++ +   + +++  CA LA L+YG+++H
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREM---LWRGVRPNYPSVISILTVCAALAVLDYGREVH 356

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN----- 250
           + +L    D D    S+L+ +Y KCG+ + A +V +  +  D    +++I+GYA      
Sbjct: 357 AAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGE 416

Query: 251 ------------------------------CGKMNDARRVFDRTTDTSSV 270
                                          GK+ + R +F+  T  SS+
Sbjct: 417 QALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSI 466



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N  I   +  G IE A+  F  MP ++  S+N+++ G  +N  P  AL LF  M   DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDL- 79

Query: 434 MDKFSLASVISACANISSLELGEQVF----ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                     S  A IS L L  Q      A +  I      +  TSL+  Y + G +
Sbjct: 80  ---------ASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLL 128


>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
 gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
          Length = 447

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 210/477 (44%), Gaps = 106/477 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC       +G+Q+H   +K G   S + + + +   Y +CG+   A  +FD M  R
Sbjct: 18  LLKSCGERCDAKLGQQVHCCVVKGGW--SNVIVDSAVAHFYAQCGDVAAASTVFDRMASR 75

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFS--------------------- 105
           +  SW  MI  +++ GH +K+LQ+F  M  +    N+F+                     
Sbjct: 76  DVVSWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALRFGKQLH 135

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + L++ +A+ GE+  A+ +F+ MPRRN I W SMI  Y ++G   
Sbjct: 136 GAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTITWTSMISGYAQSGCGE 195

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EAV LF+++    + R+  +   +  ++ AC  + ++  GK++H+ I+ N ++ +  +GS
Sbjct: 196 EAVLLFRKMK---MRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQIIKNCMEQNLQIGS 252

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV  Y +C                               G+   A R+ +   D  +V 
Sbjct: 253 TLVWFYSRC-------------------------------GEHTYAARILEAMPDRDAVA 281

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MISGY +   + EAL    +M  +GV  +  T +S L AC+ L  L  G+++HG   
Sbjct: 282 WTAMISGYNNLGHNVEALKSLDEMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVN 341

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     +V V  +L+D Y + G   +A                               + 
Sbjct: 342 KTQAFSNVFVGCSLIDMYMRCGKVDEA-------------------------------RR 370

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           +F  MP  +L++W  MI G +QN    EAL     M +    +D F L++V+S+C  
Sbjct: 371 VFDAMPEHNLVTWKVMITGFTQNCLCEEALKYMYLMQQDGYDVDDFVLSTVLSSCGG 427



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 179/379 (47%), Gaps = 67/379 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +A+ G++  A T+F+ M  R+ ++W +MI  YV++G   +A+++F ++ S   E  + + 
Sbjct: 56  YAQCGDVAAASTVFDRMASRDVVSWTTMITAYVQHGHGDKALQMFPKMVS---EGFRPNE 112

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           F + + + ACA+  AL +GKQ+H  I+     +D  +GS+LV +Y               
Sbjct: 113 FTVCSALKACAEEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMY--------------- 157

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                           A CG++ DA+ VFD+    +++ W SMISGY  +    EA+LLF
Sbjct: 158 ----------------ARCGEVFDAQAVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLF 201

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            KM+   V  +  T+  +LSAC S+  +  GK++H    K  +  ++ + S L+  YS+ 
Sbjct: 202 RKMKMRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQIIKNCMEQNLQIGSTLVWFYSR- 260

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                         CG    A  I   MP++  ++W +MI G +
Sbjct: 261 ------------------------------CGEHTYAARILEAMPDRDAVAWTAMISGYN 290

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
             G  +EAL     M    +  + ++ +S + ACA + +L  G ++   V      S+  
Sbjct: 291 NLGHNVEALKSLDEMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVNKTQAFSNVF 350

Query: 473 ISTSLVDFYCKCGFIKMDE 491
           +  SL+D Y +CG  K+DE
Sbjct: 351 VGCSLIDMYMRCG--KVDE 367



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 32/193 (16%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M   G+  ++ T   +L +C      + G+QVH    K G   +VIV SA+   Y++ G 
Sbjct: 3   MLATGIEGNSLTFVCLLKSCGERCDAKLGQQVHCCVVKGG-WSNVIVDSAVAHFYAQCGD 61

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
            + A  +F  +   D +   TMIT Y                                Q+
Sbjct: 62  VAAASTVFDRMASRDVVSWTTMITAY-------------------------------VQH 90

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
           G   +AL +F  M     R ++F++ S + ACA   +L  G+Q+   +       D  + 
Sbjct: 91  GHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKRLYKYDIHVG 150

Query: 475 TSLVDFYCKCGFI 487
           ++LV  Y +CG +
Sbjct: 151 SALVTMYARCGEV 163


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 228/516 (44%), Gaps = 105/516 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
            L+ +C++  S+  G+++H H L        + + N +L MY +CG+  +A  +FD MP 
Sbjct: 103 HLINACSSLRSLEHGRKIHRHMLTCN-YQPDMILQNHILSMYGKCGSLKEARNMFDSMPL 161

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----------------------------- 100
           +N  SW +MI G+ + G ++ ++ L+  M +                             
Sbjct: 162 KNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQL 221

Query: 101 -----KNDF-----SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                K++F     + N LIS + K  ++  A  +F+ +  ++ I+W SMI  + + G+ 
Sbjct: 222 HAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+  F+E+ S  V   Q + F+  +   AC+ L   + G+QIH   +  GL  D   G
Sbjct: 282 LEALCHFREMLSQSV--YQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAG 339

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
            SL ++Y KC                               G +  AR VF        V
Sbjct: 340 CSLCDMYAKC-------------------------------GFLESARTVFYHIEKPDLV 368

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++I+G+ S +   E+   F +MR  G++ +  T+ S+L ACS    L HG QVH + 
Sbjct: 369 AWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYI 428

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+G   D+ V ++LL  YSK                               C  + DA 
Sbjct: 429 VKMGFNLDIPVCNSLLSMYSK-------------------------------CSNLNDAL 457

Query: 391 HIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            +F  + NK+ ++SWN+++    Q     E L L   M    ++ D  +L +V+ +   I
Sbjct: 458 QVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQI 517

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +S E+G Q+   +   GL+ D  +S +L++ Y KCG
Sbjct: 518 ASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCG 553



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 241/537 (44%), Gaps = 120/537 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              +++SC+      + +QLH H LK     + L   N L+ MY +     DA+ +F  +
Sbjct: 202 FGSIVKSCSGLDDFKLARQLHAHVLKSE-FGADLIAQNALISMYTKFSQMADAINVFSRI 260

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             ++  SW +MI GF +LG++ ++L  F  M  ++ +  N  + G               
Sbjct: 261 IIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCG 320

Query: 113 -------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                    +AK G L++ART+F  + + + +AWN++I  +   
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASV 380

Query: 148 GFAREAVRLFKEL-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
             A+E+   F ++ ++ LV     D  +L +++ AC++   L +G Q+HS+I+  G + D
Sbjct: 381 SNAKESSSFFSQMRHTGLVPN---DVTVL-SLLCACSEPVMLNHGIQVHSYIVKMGFNLD 436

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + +SL+++Y K                               C  +NDA +VF+   +
Sbjct: 437 IPVCNSLLSMYSK-------------------------------CSNLNDALQVFEDIGN 465

Query: 267 TSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            + ++ WN++++  +  N+  E L L   M  + +  D  TL +VL +   +   E G Q
Sbjct: 466 KADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQ 525

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H    K G+  D+ V++AL++ Y+K                               CG 
Sbjct: 526 IHCFIMKSGLNLDISVSNALINMYTK-------------------------------CGS 554

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +E A+ +F ++ N  +ISW+S+IVG +Q G   EA +LF  M  L ++ ++ +   +++A
Sbjct: 555 LECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTA 614

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKCGFIKMDEYYLMQ 496
           C++I  +E G +++       +  D  IS +      +VD   + G + + E ++ Q
Sbjct: 615 CSHIGMVEEGLKLYRT-----MQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQ 666



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 109/278 (39%), Gaps = 73/278 (26%)

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           + E  +A  +F K   + +   + T   +++ACSSL  LEHG+++H H        D+I+
Sbjct: 78  HREALKAFDIFQKCSSSPL--KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMIL 135

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS-------------------- 381
            + +L  Y K G   +A  +F  + + + +   +MI+ YS                    
Sbjct: 136 QNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 382 ------------SCGRIEDAK-------HIFRTMPNKSLISWNSMI-------------- 408
                       SC  ++D K       H+ ++     LI+ N++I              
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 409 -----------------VGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANIS 450
                             G SQ G  +EAL  F  M ++   + ++F   S  SAC+ + 
Sbjct: 256 VFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLL 315

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             + G Q+       GL SD     SL D Y KCGF++
Sbjct: 316 EPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLE 353



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 10/198 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L S     S  VG Q+H   +K G LN  + ++N L+ MY +CG+   A  +FD +
Sbjct: 507 LTNVLVSSGQIASYEVGSQIHCFIMKSG-LNLDISVSNALINMYTKCGSLECARKMFDSI 565

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SW+++I G+ + G  +++ +LF  M     + N+ ++  +++  +  G ++   
Sbjct: 566 GNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGL 625

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ--CDAFILATVIGA 181
            L+  M     I+  +  HC         A  L  ++  D ++++    D  +  T++ A
Sbjct: 626 KLYRTMQEDYRIS-PTKEHCSCMVDLLARAGCL--DVAEDFIKQMPFVPDVVVWKTLLAA 682

Query: 182 CADLAALEYGKQIHSHIL 199
           C     LE GK+   ++L
Sbjct: 683 CKVHGNLEVGKRAAENVL 700


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 223/479 (46%), Gaps = 62/479 (12%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N+ +  +MR G   DA  LF  M RR+  ++NAM+ G+   G    +L  F  +P+ + F
Sbjct: 39  NKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRPDSF 98

Query: 105 SWNMLISGFAKAGELKTARTLFNDMP-------------------------------RRN 133
           S+N L+     +  L  AR LF++MP                                ++
Sbjct: 99  SYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKD 158

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
           A++WN M+  Y+RNG  +EA  LF         R + DA     ++      + +E  ++
Sbjct: 159 AVSWNGMLAAYIRNGRIQEARDLFD-------SRTEWDAISWNALMAGYVQCSQIEEAQK 211

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           + + +       D V  +++V+ + + GD   A ++ ++    D F  +A++SGYA  G 
Sbjct: 212 MFNRMPQR----DVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGM 267

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           + +A+RVFD   + ++V WN+M++ Y+      EA  LF  M       + ++  ++L+ 
Sbjct: 268 LEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAM----PCRNVASWNTMLTG 323

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +  G L+  + +     +     D +  +A+L  YS+ G   +  +LF E+        
Sbjct: 324 YAQAGMLDEARAIFDMMPQ----KDAVSWAAMLAAYSQGGFSEETLQLFKEM-------- 371

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                +Y  CG +E+A   F  M  + ++SWN+MI G +++G   EAL++F  M K   +
Sbjct: 372 -GRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTK 430

Query: 434 MDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            D  +L  V++AC++   +E G   F  +    G+ +     T ++D   + G  ++DE
Sbjct: 431 PDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAG--RLDE 487



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 170/393 (43%), Gaps = 64/393 (16%)

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTAR 123
           FD  P ++  SWN M+  +++ G  +++  LF+   + +  SWN L++G+ +  +++ A+
Sbjct: 151 FDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQ 210

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +FN MP+R+ ++WN+M+  + R G   EA RLF       V  ++ D F    V+   A
Sbjct: 211 KMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFD------VAPIR-DVFTWTAVVSGYA 263

Query: 184 DLAALEYGKQIHSHIL-VNGLDFDSVLGS--------------------------SLVNL 216
               LE  K++   +   N + +++++ +                          +++  
Sbjct: 264 QNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTG 323

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN----------------------CGKM 254
           Y + G  + A  + +MM + D    +A+++ Y+                       CG M
Sbjct: 324 YAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNM 383

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
            +A   F+   +   V WN+MI+GY  +    EAL +F  MR+     D  TL  VL+AC
Sbjct: 384 EEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAAC 443

Query: 315 SSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK------V 367
           S  G +E G    +      GV       + ++D   + G   +A  L  ++       +
Sbjct: 444 SHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTM 503

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           +  +L  + I   S  GR   A+ IF   P  +
Sbjct: 504 WGALLGASRIHRNSELGR-NAAEKIFELEPENA 535



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 330 ACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           AC  G  D +VI  +  +  + + G   DA +LF+ +    T   N M+  Y++ GR+  
Sbjct: 25  ACITGKPDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTL 84

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   FR++P     S+N+++  L  + S  +A  LF  M       D  S   +IS+ AN
Sbjct: 85  ALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPV----KDSVSYNVMISSHAN 140

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              + L    F     +  + D +    ++  Y + G I+
Sbjct: 141 HGLVSLARHYFD----LAPEKDAVSWNGMLAAYIRNGRIQ 176


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 217/480 (45%), Gaps = 110/480 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C    ++  G++LH H +  G   + +P+   LLQMY +CG+  DA  +F+ M  +
Sbjct: 16  LVAACTKLQALEEGRRLHEHLIITG-FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------------------- 98
           + F+W+++I  + + G  E ++ L+  M                                
Sbjct: 75  DLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIH 134

Query: 99  --------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                   PQ +D   + L++ + K  E+  AR +F  M  RN  ++ +MI  YV+ G  
Sbjct: 135 QRILASKVPQ-DDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEH 193

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ LF  ++   VE ++ +A+  AT++GA   L  LE G+++H H+   G D + V+ 
Sbjct: 194 AEALELFSRMSK--VEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 251

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV +                               Y  CG   +AR+VFD  T  + +
Sbjct: 252 NALVTM-------------------------------YGKCGSPVEARKVFDSMTARNVI 280

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W SMI+ Y  +    EAL LF +M    V     + +S L+AC+ LG L+ G+++H   
Sbjct: 281 SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHR- 336

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
                + +  +AS  ++T                          +++++Y+ CG ++DA+
Sbjct: 337 -----VVEAHLASPQMET--------------------------SLLSMYARCGSLDDAR 365

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M  +   S N+MI   +Q+G   +AL ++  M +  +  D  +  SV+ AC++ S
Sbjct: 366 RVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTS 425



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 174/378 (46%), Gaps = 70/378 (18%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  +AK G L  A+ +F  M  ++  AW+S+I  Y R G    AV L++ +   + E +
Sbjct: 51  LLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRM---IAEGV 107

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + +    A  +G CA +A L  G+ IH  IL + +  D VL  SL+N+Y KC +   A +
Sbjct: 108 EPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARK 167

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V   MK  +    +A+IS Y   G                               E  EA
Sbjct: 168 VFEGMKARNVRSYTAMISAYVQAG-------------------------------EHAEA 196

Query: 289 LLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           L LF +M +   +E +A T A++L A   LG LE G++VH H    G   +V+V +AL+ 
Sbjct: 197 LELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVT 256

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y K G P +A K+F  +   + I   +MI  Y                           
Sbjct: 257 MYGKCGSPVEARKVFDSMTARNVISWTSMIAAY--------------------------- 289

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
               +Q+G+P EAL+LF    ++D+     S +S ++ACA + +L+ G ++  RV    L
Sbjct: 290 ----AQHGNPQEALNLF---KRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHL 342

Query: 468 DSDQIISTSLVDFYCKCG 485
            S Q + TSL+  Y +CG
Sbjct: 343 ASPQ-METSLLSMYARCG 359



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 67/291 (23%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+++H H   +G  ++ + + N L+ MY +CG+P +A  +FD M  RN  SW +MI  + 
Sbjct: 232 GRKVHRHLASRG-FDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYA 290

Query: 84  KLGHKEKSLQLF---NVMPQKNDFSWNM-------------------------------- 108
           + G+ +++L LF   +V P    FS  +                                
Sbjct: 291 QHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETS 350

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+S +A+ G L  AR +FN M  R+A + N+MI  + ++G  ++A+R+++ +     E +
Sbjct: 351 LLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQ---EGI 407

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS------------LVNL 216
             D     +V+ AC+           H+ ++ +  DF   L               +V++
Sbjct: 408 PADGITFVSVLVACS-----------HTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDV 456

Query: 217 YGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMND----ARRVFD 262
            G+ G    A +++  M  + D      L+SG    G +N     AR+VF+
Sbjct: 457 LGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFE 507



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 31/190 (16%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M   G++ D   + S+++AC+ L  LE G+++H H    G   D+ + +ALL  Y+K G 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             DA ++F  +++ D    +++I+ Y+  GR E A  ++R M              +++ 
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRM--------------IAEG 106

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
             P                 +  + A  +  CA+++ L  G  +  R+    +  D ++ 
Sbjct: 107 VEP-----------------NVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQ 149

Query: 475 TSLVDFYCKC 484
            SL++ Y KC
Sbjct: 150 DSLLNMYLKC 159



 Score = 45.1 bits (105), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           M +  +  DKF + S+++AC  + +LE G ++   + I G  +D  + T+L+  Y KCG
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCG 59


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 207/433 (47%), Gaps = 74/433 (17%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISG------------- 112
           N FSWNA I G+++ G  E    L+  M      + ++ ++ +L+ G             
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180

Query: 113 ----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                                     GEL  A  +FN    R+ + WNSMI   V+ G A
Sbjct: 181 LGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLA 240

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA++++KE+ +   E+++ +   +  +I +C+ +  L  GK+ H +I  +GL+F   L 
Sbjct: 241 IEAIKIYKEMEA---EKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLT 297

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+++Y KCG+  +A  + + M +      + ++ GYA  G ++ AR +  +  + S V
Sbjct: 298 NALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVV 357

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++ISG +   +  EAL LFH+M+   +  D  T+ + LSACS LG L+ G  +H + 
Sbjct: 358 PWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYI 417

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +  +  DV + +AL+D Y+K                               CG I  A 
Sbjct: 418 ERHKLSIDVALGTALVDMYAK-------------------------------CGNIARAL 446

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  +P ++ ++W ++I GL+ +G+  +AL  F  M  + +  D+ +   V+SAC +  
Sbjct: 447 QVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGG 506

Query: 451 SLELGEQVFARVT 463
            +E G + F+ ++
Sbjct: 507 LVEEGRKYFSEMS 519



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 66/315 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ SC+    +++GK+ H +  + G L  T+P+ N L+ MY++CG    A +LFD M ++
Sbjct: 265 MISSCSQVQDLNLGKEFHCYIKEHG-LEFTIPLTNALMDMYVKCGELLTARVLFDNMAQK 323

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
              SW  M+ G+ + G  + + ++   +P+K+   WN +ISG  +A + K A  LF++M 
Sbjct: 324 TLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ 383

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R                                   ++ D   +   + AC+ L AL+ 
Sbjct: 384 IRT----------------------------------IEPDKVTMVNCLSACSQLGALDV 409

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  IH +I  + L  D  LG++LV++Y KCG+   A QV   +  P   CL+        
Sbjct: 410 GIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEI--PQRNCLT-------- 459

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                                W ++I G   +    +AL  F KM   G++ D  T   V
Sbjct: 460 ---------------------WTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGV 498

Query: 311 LSACSSLGFLEHGKQ 325
           LSAC   G +E G++
Sbjct: 499 LSACCHGGLVEEGRK 513



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 177/402 (44%), Gaps = 35/402 (8%)

Query: 88  KEKSLQLFNVMPQKNDFSWNMLIS--GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           K+   Q+ +    +N F+ + L++    +++ EL     +   +   N  +WN+ I  YV
Sbjct: 74  KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYV 133

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
            +G       L+K +   L   L+ D      ++  C                       
Sbjct: 134 ESGDIEGGFMLYKRML--LGGTLKPDNHTYPLLLKGCC---------------------- 169

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                      Y  C        VL    E D F  +A I+   +CG+++ A  VF+++ 
Sbjct: 170 ---------GQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSR 220

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V WNSMI+G +      EA+ ++ +M    V  +  T+  ++S+CS +  L  GK+
Sbjct: 221 VRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKE 280

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H +  + G+   + + +AL+D Y K G    A  LF  +     +   TM+  Y+  G 
Sbjct: 281 FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGF 340

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           ++ A+ I   +P KS++ WN++I G  Q     EAL LF  M    +  DK ++ + +SA
Sbjct: 341 LDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSA 400

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           C+ + +L++G  +   +    L  D  + T+LVD Y KCG I
Sbjct: 401 CSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNI 442


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 202/403 (50%), Gaps = 69/403 (17%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFS 105
           MY +C    +A+ +F+ +P     SWN +I GF + G   K++++ ++M +     N+ +
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
           ++ L++   KA ++ +AR +F+ + R +   WN+++  Y +    ++ + LF+ +     
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQH--- 117

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           + +Q D   LA ++ +C+ L  L++G+Q+HS  +   L  D  + S LV++Y K      
Sbjct: 118 QNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSK------ 171

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG++  AR +F++ T+   V WNS+ISG   ++ +
Sbjct: 172 -------------------------CGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLN 206

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA   F +MR NG++   S+ AS++++CS L  + HG+Q+H    K G   +V V SAL
Sbjct: 207 KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSAL 266

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K G   DA +LF                              F TM  K++++WN
Sbjct: 267 IDMYAKCGNMDDA-RLF------------------------------FDTMMMKNIVAWN 295

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            MI G +QNG   +A++LF  M   + + D  +  +V++ C++
Sbjct: 296 EMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSH 338



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 145/277 (52%), Gaps = 35/277 (12%)

Query: 213 LVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           L+  +G+ G    A +VL++M+E    P++   S L++       ++ AR +FD+ +  S
Sbjct: 29  LITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPS 88

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              WN+++SGY    +  + + LF +M+   V  D +TLA +LS+CS LG L+ G+QVH 
Sbjct: 89  VTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHS 148

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            + +  + +D+ VAS L+D YSK                               CG+I  
Sbjct: 149 ASVRFLLHNDMFVASGLVDMYSK-------------------------------CGQIGI 177

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ IF  M  + ++ WNS+I GL+ +    EA D F  M +  +   + S AS+I++C+ 
Sbjct: 178 ARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR 237

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +SS+  G Q+ A+V   G D +  + ++L+D Y KCG
Sbjct: 238 LSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCG 274



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 166/384 (43%), Gaps = 81/384 (21%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK------------ 101
           A  +FD++ R +  +WN ++ G+ +    + +++LF      NV P +            
Sbjct: 77  ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 136

Query: 102 --------------------ND-FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                               ND F  + L+  ++K G++  AR++FN M  R+ + WNS+
Sbjct: 137 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSI 196

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I     +   +EA   FK++  + +   +      A++I +C+ L+++ +G+QIH+ ++ 
Sbjct: 197 ISGLTIHSLNKEAFDFFKQMRENGIMPTESS---YASMINSCSRLSSIPHGRQIHAQVMK 253

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G D +  +GS+L+++Y KCG+                               M+DAR  
Sbjct: 254 DGYDQNVYVGSALIDMYAKCGN-------------------------------MDDARLF 282

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD     + V WN MI GY  N    +A+ LF  M       DA T  +VL+ CS  G +
Sbjct: 283 FDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLV 342

Query: 321 EHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK------VYDTILL 373
           +      +      G+I      + L+D   + G   +   L  ++       +++ +L 
Sbjct: 343 DKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLA 402

Query: 374 NTMITVYSSCGRIEDAKHIFRTMP 397
             ++   +  G+   A+H+FR  P
Sbjct: 403 ACVVHHNAELGKCA-AEHLFRIDP 425



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 18/242 (7%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M T   Y A ++ SC+   SI  G+Q+H   +K G  +  + + + L+ MY +CGN  DA
Sbjct: 222 MPTESSY-ASMINSCSRLSSIPHGRQIHAQVMKDG-YDQNVYVGSALIDMYAKCGNMDDA 279

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND-FSWNMLISGFAKA 116
            L FD M  +N  +WN MI G+ + G  +K+++LF  M    QK D  ++  +++G + +
Sbjct: 280 RLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHS 339

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFI 174
           G +  A   FN M     I   +  +  + +   R     F E+ + L+ ++ C  D  I
Sbjct: 340 GLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAG--RFVEVEA-LIHKMPCKDDPII 396

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLN 231
              ++ AC      E GK    H+       D    S  V   N+Y   G    A+ V  
Sbjct: 397 WEVLLAACVVHHNAELGKCAAEHL----FRIDPKNPSPYVLLSNIYASLGRHGDASAVRA 452

Query: 232 MM 233
           +M
Sbjct: 453 LM 454



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 118/282 (41%), Gaps = 66/282 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L SC+    +  G+Q+H   ++  +L++ + +A+ L+ MY +CG    A  +F++M
Sbjct: 127 LAVILSSCSKLGILDFGRQVHSASVRF-LLHNDMFVASGLVDMYSKCGQIGIARSIFNKM 185

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMP---------------------- 99
             R+   WN++I G       +++   F       +MP                      
Sbjct: 186 TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGR 245

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       +N +  + LI  +AK G +  AR  F+ M  +N +AWN MIH Y +NG
Sbjct: 246 QIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNG 305

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +AV LF+ +   L    + DA     V+  C+           HS ++   + F + 
Sbjct: 306 LGDKAVELFEYM---LTTEQKPDAVTFIAVLTGCS-----------HSGLVDKAMAFFNS 351

Query: 209 LGSS------------LVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +S            L++  G+ G F     +++ M   DD
Sbjct: 352 MENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDD 393



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 375 TMITVYSSCGRIED---AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           T   + +SC +  D   A+ +F  +   S+ +WN+++ G  Q     + ++LF  M   +
Sbjct: 60  TYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQN 119

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++ D+ +LA ++S+C+ +  L+ G QV +      L +D  +++ LVD Y KCG I
Sbjct: 120 VQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQI 175


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 195/418 (46%), Gaps = 73/418 (17%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL+ Y+R G   DA+ LF +MP RN  S+  ++ G +  G   ++ +LF+ MP ++  +W
Sbjct: 118 LLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAW 177

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++SG+ +AG +  AR LF++MP+RN ++W +MI  Y +NG     V L ++L   + E
Sbjct: 178 TAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNG----EVNLARKLFEVMPE 233

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
           R                                      + V  ++++  Y + G    A
Sbjct: 234 R--------------------------------------NEVSWTAMLVGYIQAGHVEDA 255

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            ++ N M E      +A++ G+   G ++ A+ VF++  +     W++MI  Y  N    
Sbjct: 256 AELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLM 315

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL  F +M   GV  +  ++ S+L+ C++L  L++G++VH    +     DV   SAL 
Sbjct: 316 EALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL- 374

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                         IT+Y  CG ++ AK +F T   K ++ WNS
Sbjct: 375 ------------------------------ITMYIKCGNLDKAKRVFHTFEPKDIVMWNS 404

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           MI G +Q+G   +AL +F +M    +  D  +    ++AC+    ++ G ++F  +T+
Sbjct: 405 MITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTV 462



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 181/383 (47%), Gaps = 25/383 (6%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLV 165
           N  I+  A+AG ++ AR  F  MP R   ++N+++  Y RN     A+ LF+ + S DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 166 ER---LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                +   +    T+  A A LA++ +   + S              +SL+  Y + G 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSF-------------TSLLRGYVRHGL 127

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
              A ++   M E +    + L+ G  + G++N+ARR+FD   D   V W +M+SGY   
Sbjct: 128 LADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQA 187

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
              TEA  LF +M +  V+    +  +++S  +  G +   +++     +V    + +  
Sbjct: 188 GRITEARALFDEMPKRNVV----SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSW 239

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           +A+L  Y + G   DA +LF+ +  +     N M+  +   G ++ AK +F  M  +   
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +W++MI    QN   +EAL  F  M    +R +  S+ S+++ CA ++ L+ G +V A +
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
                D D    ++L+  Y KCG
Sbjct: 360 LRCSFDMDVFAVSALITMYIKCG 382



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 69/290 (23%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y + G  T+A  LFDEMP+RN  SW AMI G+ + G    + +LF VMP++N+ SW
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSW 239

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIA------------------------------ 136
             ++ G+ +AG ++ A  LFN MP     A                              
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 137 -WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            W++MI  Y +N F  EA+  F+E+   L   ++ +   + +++  CA LA L+YG+++H
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREM---LWRGVRPNYPSVISILTVCAALAVLDYGREVH 356

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN----- 250
           + +L    D D    S+L+ +Y KCG+ + A +V +  +  D    +++I+GYA      
Sbjct: 357 AAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGE 416

Query: 251 ------------------------------CGKMNDARRVFDRTTDTSSV 270
                                          GK+ + R +F+  T  SS+
Sbjct: 417 QALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSI 466



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N  I   +  G IE A+  F  MP ++  S+N+++ G  +N  P  AL LF  M   DL 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDL- 79

Query: 434 MDKFSLASVISACANISSLELGEQVF----ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                     S  A IS L L  Q      A +  I      +  TSL+  Y + G +
Sbjct: 80  ---------ASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLL 128


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 233/516 (45%), Gaps = 106/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +LQ C    S+  GK++H   +  GI +    +  +L+ MY+ CG+      +FD++   
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGI-SIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
             F WN ++  + K+G+  +S+ LF  M +                              
Sbjct: 434 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 493

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     N    N LI+ + K G +++A  LF+++   + ++WNSMI+  V NGF+ 
Sbjct: 494 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 553

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
             + +F ++   L+  ++ D   L +V+ A A++  L  G+ +H   +      + V  +
Sbjct: 554 NGLEIFIQM---LILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSN 610

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y KC                               G +N A  VF +  DT+ V 
Sbjct: 611 TLLDMYSKC-------------------------------GNLNGATEVFVKMGDTTIVS 639

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S I+ Y+     ++A+ LF +M+  GV  D  T+ S++ AC+    L+ G+ VH +  
Sbjct: 640 WTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 699

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  ++ V +AL++ Y+K G   +A  +FS++ V D +  NTMI              
Sbjct: 700 KNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG------------- 746

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             G SQN  P EAL+LF +M K   + D  ++A V+ ACA +++
Sbjct: 747 ------------------GYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAA 787

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           L+ G ++   +   G  SD  ++ +LVD Y KCG +
Sbjct: 788 LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 823



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 208/475 (43%), Gaps = 108/475 (22%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K++H + LK G   S   + N L+  Y + G    A  LFDE+   +  SWN+MI G + 
Sbjct: 490 KRVHGYVLKLG-FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 548

Query: 85  LGHKEKSLQLFNVM----------------------------------------PQKNDF 104
            G     L++F  M                                         ++  F
Sbjct: 549 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVF 608

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S N L+  ++K G L  A  +F  M     ++W S I  YVR G   +A+ LF E+ S  
Sbjct: 609 S-NTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           V   + D + + +++ ACA  ++L+ G+ +HS+++ NG+      GS+L           
Sbjct: 668 V---RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGM------GSNL----------- 707

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
               V N           ALI+ YA CG + +AR VF +      V WN+MI GY  N+ 
Sbjct: 708 ---PVTN-----------ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSL 753

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EAL LF  M++    +D  T+A VL AC+ L  L+ G+++HGH  + G   D+ VA A
Sbjct: 754 PNEALELFLDMQKQFKPDDI-TMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACA 812

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+D Y+K                               CG +  A+ +F  +P K LISW
Sbjct: 813 LVDMYAK-------------------------------CGLLVLAQLLFDMIPKKDLISW 841

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             MI G   +G   EA+  F  M    +  D+ S + +++AC++   L  G + F
Sbjct: 842 TVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFF 896



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 65/380 (17%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  +   G+L   R +F+ +       WN ++  Y + G  RE+V LFK++    V   
Sbjct: 410 LVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG- 468

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             + +    V+   A L  ++  K++H ++L  G                    F S   
Sbjct: 469 --NCYTFTCVLKCFAALGKVKECKRVHGYVLKLG--------------------FGSNTA 506

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           V+N           +LI+ Y   G +  A  +FD  ++   V WNSMI+G + N      
Sbjct: 507 VVN-----------SLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNG 555

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L +F +M   GV  D +TL SVL A +++G L  G+ +HG   K                
Sbjct: 556 LEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVK---------------- 599

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
                    AC  FSE    + +  NT++ +YS CG +  A  +F  M + +++SW S I
Sbjct: 600 ---------AC--FSE----EVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTI 644

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
               + G   +A+ LF  M    +R D +++ S++ ACA  SSL+ G  V + V   G+ 
Sbjct: 645 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 704

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           S+  ++ +L++ Y KCG ++
Sbjct: 705 SNLPVTNALINMYAKCGSVE 724



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 186/429 (43%), Gaps = 87/429 (20%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ +G+ LH  F  K   +  +  +N LL MY +CGN   A  +F +M      SW + I
Sbjct: 586 NLSLGRALH-GFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTI 644

Query: 80  EGFMKLGHKEKSLQLFNVMPQK-------------------------------------- 101
             +++ G    ++ LF+ M  K                                      
Sbjct: 645 AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 704

Query: 102 -NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
            N    N LI+ +AK G ++ AR +F+ +P ++ ++WN+MI  Y +N    EA+ LF   
Sbjct: 705 SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFL-- 762

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
             D+ ++ + D   +A V+ ACA LAAL+ G++IH HIL  G   D  +  +LV++Y KC
Sbjct: 763 --DMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKC 820

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G    A  + +M+ + D    + +I+GY   G  N                         
Sbjct: 821 GLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGN------------------------- 855

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDV 339
                 EA+  F++MR  G+  D S+ + +L+ACS  G L  G K  +    + GV   +
Sbjct: 856 ------EAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKL 909

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIED-------AKH 391
              + ++D  ++ G  S A K    + +  DT +   ++   S C    D       A+H
Sbjct: 910 EHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLL---SGCRIHHDVKLAEKVAEH 966

Query: 392 IFRTMPNKS 400
           IF   P+ +
Sbjct: 967 IFELEPDNT 975



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 160/362 (44%), Gaps = 75/362 (20%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N+ I+ +   G  R A+ L  +  S     L  +++   +V+  CA+  +LE GK++HS 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKS---YELGLNSY--CSVLQLCAEKKSLEDGKRVHSV 394

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           I+ NG+  D  LG+ LV +Y  CGD                     L+ G          
Sbjct: 395 IISNGISIDEALGAKLVFMYVNCGD---------------------LVQG---------- 423

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
           R++FD+  +    +WN ++S Y       E++ LF KM++ GV+ +  T   VL   ++L
Sbjct: 424 RKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAAL 483

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G ++  K+VHG+  K+G   +  V ++L+  Y K G    A  LF EL   D        
Sbjct: 484 GKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD-------- 535

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
                                  ++SWNSMI G   NG     L++F  M  L + +D  
Sbjct: 536 -----------------------VVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLT 572

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------FIKM 489
           +L SV+ A ANI +L LG  +           + + S +L+D Y KCG        F+KM
Sbjct: 573 TLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 632

Query: 490 DE 491
            +
Sbjct: 633 GD 634



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 20/203 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    ++  G+++H H L++G   S L +A  L+ MY +CG    A LLFD +
Sbjct: 775 MACVLPACAGLAALDKGREIHGHILRRGYF-SDLHVACALVDMYAKCGLLVLAQLLFDMI 833

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P+++  SW  MI G+   G   +++  FN M     + ++ S++++++  + +G L    
Sbjct: 834 PKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGW 893

Query: 124 TLFNDMPRRNAIAWNSMIHCY-------VRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             FN M  RN       +  Y        R G   +A +  + +       ++ D  I  
Sbjct: 894 KFFNSM--RNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESM------PIKPDTTIWG 945

Query: 177 TVIGACADLAALEYGKQIHSHIL 199
            ++  C     ++  +++  HI 
Sbjct: 946 VLLSGCRIHHDVKLAEKVAEHIF 968


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 231/524 (44%), Gaps = 105/524 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y + +L+ C +  S+ V K +H   + K ++N    +   L+ +Y +C     A L+
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIH-GLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQK---------------- 101
             +MP R+  SW A+I+G +  G    S+ LF       +MP +                
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229

Query: 102 -----------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                            + F  + L+  +AK GE++ A  +F  MP +N + WN +++ Y
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            + G     ++LF  +   +   ++C+ F L TV+  CA+   L+ G+ IHS I+  G +
Sbjct: 290 AQRGDVTGVLKLFCSM---MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE 346

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +  +G  LV++Y KCG    A  V   +K+PD                           
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPD--------------------------- 379

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                V+W+++I+      +  E++ LFH MR    L +  T+ S+LSA ++ G L++G+
Sbjct: 380 ----IVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H    K G   DV V++AL+  Y K G   D  KL                       
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL----------------------- 472

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                   + +M ++ LISWN+ + GL   G     L +F +M +     + ++  S++ 
Sbjct: 473 --------YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +C+ +  +  G QV A +    LD +  + T+L+D Y KC +++
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/523 (23%), Positives = 234/523 (44%), Gaps = 105/523 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C+   ++ +GKQ+H    K G+L   L + + L+ +Y +CG    A  +F  M
Sbjct: 216 LATGLKACSLCMALDLGKQMHAQAFKLGLL-LDLFVGSALVDLYAKCGEIELASKMFIGM 274

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P +N  +WN ++ G+ + G     L+LF  M +     N+F+   ++ G A +  LK  +
Sbjct: 275 PEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQ 334

Query: 124 TL-----------------------------------FNDMPRRNAIAWNSMIHCYVRNG 148
            +                                   F  + + + + W+++I C  + G
Sbjct: 335 VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQG 394

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + E+++LF  +   L + L  + + + +++ A  +   L+YG+ IH+ +   G + D  
Sbjct: 395 QSEESIKLFHLMR--LGDTLP-NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVA 451

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LV +Y K G  +   ++   M + D    +A +SG  +CG       ++DR     
Sbjct: 452 VSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG-------MYDR----- 499

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                               L +F+ M   G + +  T  S+L +CS L  + +G+QVH 
Sbjct: 500 -------------------PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHA 540

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  K  + D+  V +AL+D Y+K                               C  +ED
Sbjct: 541 HIIKNQLDDNNFVCTALIDMYAK-------------------------------CMYLED 569

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  +  + L +W  +I   +Q     +AL+ F  M +  ++ ++F+LA  +S C++
Sbjct: 570 ADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++SLE G+Q+ + V   G  SD  + ++LVD Y KCG ++  E
Sbjct: 630 LASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 216/495 (43%), Gaps = 113/495 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C    ++  G+ +H   +K G   +   I   L+ MY +CG   DA+ +F  +
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
            + +   W+A+I    + G  E+S++LF++M       N ++   L+S     G L+  +
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 124 TLFNDMPRRNAIAW-----------NSMIHCYVRNGFAREAVRLFKEL-NSDLV------ 165
           ++       +A  W           N+++  Y++NG   +  +L++ + + DL+      
Sbjct: 436 SI-------HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYL 488

Query: 166 ---------------------ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
                                E    + +   +++G+C+ L  + YG+Q+H+HI+ N LD
Sbjct: 489 SGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLD 548

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                                           ++F  +ALI  YA C  + DA   F+R 
Sbjct: 549 -------------------------------DNNFVCTALIDMYAKCMYLEDADVAFNRL 577

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           +      W  +I+ Y   N+  +AL  F +M++ GV  +  TLA  LS CSSL  LE G+
Sbjct: 578 SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQ 637

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+H    K G + D+ V SAL+D Y+K                               CG
Sbjct: 638 QLHSMVFKSGHVSDMFVGSALVDMYAK-------------------------------CG 666

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            +E+A+ +F  +  +  I+WN++I G +QNG   +AL  F  M    +  D  +   ++S
Sbjct: 667 CMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILS 726

Query: 445 ACANISSLELGEQVF 459
           AC++   +E G++ F
Sbjct: 727 ACSHQGLVEEGKEHF 741



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D+ L  +++ VY+ C     A+ +   MP++ ++SW ++I GL   G   +++ LF  M 
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +  ++F+LA+ + AC+   +L+LG+Q+ A+   +GL  D  + ++LVD Y KCG I+
Sbjct: 206 NEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 489 M 489
           +
Sbjct: 266 L 266


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 207/445 (46%), Gaps = 51/445 (11%)

Query: 51  YMRCGNPTDALLLFDEM-PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           Y++CG   +A  LFD    ++N  +W AM+ G++K    +++ +LF  MP +N  SWN +
Sbjct: 42  YLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTM 101

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           + G+A+ G  + A  LF  MP RN ++WN++I   V+ G   +A RLF ++         
Sbjct: 102 VDGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDR------ 155

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D     T++   A    +E  + +   + V  +    V  ++++  Y +    + A Q+
Sbjct: 156 -DVVSWTTMVAGLAKNGRVEDARALFDQMPVRNV----VSWNAMITGYAQNRRLDEALQL 210

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M E D    + +I+G+   G++N A ++F    + + + W +M++GY+ +    EAL
Sbjct: 211 FQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEAL 270

Query: 290 LLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
            +F KM   N +  +  T  +VL ACS L  L  G+Q+H    K    D   V SAL   
Sbjct: 271 RVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSAL--- 327

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT--MPNKSLISWNS 406
                                       I +YS CG +  A+ +F    +  + LISWN 
Sbjct: 328 ----------------------------INMYSKCGELHTARKMFDDGLLSQRDLISWNG 359

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV---T 463
           MI   + +G   EA++LF  M +L +  +  +   +++AC++   +E G + F  +    
Sbjct: 360 MIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNR 419

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            I L  D      LVD   + G +K
Sbjct: 420 SIQLREDHY--ACLVDLCGRAGRLK 442



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 146/325 (44%), Gaps = 64/325 (19%)

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGY 279
           G+ + A +V   M E D    + +I+GY  CG + +AR++FDR     +V+ W +M++GY
Sbjct: 15  GEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGY 74

Query: 280 ISNNEDTEALLLFHKMR---------------RNGVLEDASTL------------ASVLS 312
           I  N+  EA  LF++M                RNG+ + A  L             ++++
Sbjct: 75  IKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIIT 134

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           A    G +E  +++           DV+  + ++   +K G   DA  LF ++ V + + 
Sbjct: 135 ALVQCGRIEDAQRLFDQMKD----RDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVS 190

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-- 430
            N MIT Y+   R+++A  +F+ MP + + SWN+MI G  QNG    A  LF  M +   
Sbjct: 191 WNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNV 250

Query: 431 ------------------------------DLRMDKFSLASVISACANISSLELGEQVFA 460
                                         +L+ +  +  +V+ AC++++ L  G+Q+  
Sbjct: 251 ITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQ 310

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCG 485
            ++         + ++L++ Y KCG
Sbjct: 311 MISKTVFQDSTCVVSALINMYSKCG 335



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 107/237 (45%), Gaps = 21/237 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MP 68
           +L +C+    +  G+Q+H   + K +   +  + + L+ MY +CG    A  +FD+  + 
Sbjct: 292 VLGACSDLAGLTEGQQIH-QMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLS 350

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
           +R+  SWN MI  +   G+ ++++ LFN M +     ND ++  L++  +  G ++    
Sbjct: 351 QRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFK 410

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            F+++ +  +I      +  ++    R G  +EA  + + L  ++         +   ++
Sbjct: 411 YFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEV------PLTVWGALL 464

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
             C      + GK +   IL   ++  +    SL+ N+Y   G +  A  V   MK+
Sbjct: 465 AGCNVHGNADIGKLVAEKIL--KIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKD 519


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 231/524 (44%), Gaps = 105/524 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           ++ Y + +L+ C +  S+ V K +H   + K ++N    +   L+ +Y +C     A L+
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIH-GLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLV 169

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQK---------------- 101
             +MP R+  SW A+I+G +  G    S+ LF       +MP +                
Sbjct: 170 LAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMAL 229

Query: 102 -----------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                            + F  + L+  +AK GE++ A  +F  MP +N + WN +++ Y
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            + G     ++LF  +   +   ++C+ F L TV+  CA+   L+ G+ IHS I+  G +
Sbjct: 290 AQRGDVTGVLKLFCSM---MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE 346

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +  +G  LV++Y KCG    A  V   +K+PD                           
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPD--------------------------- 379

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                V+W+++I+      +  E++ LFH MR    L +  T+ S+LSA ++ G L++G+
Sbjct: 380 ----IVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +H    K G   DV V++AL+  Y K G   D  KL                       
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL----------------------- 472

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                   + +M ++ LISWN+ + GL   G     L +F +M +     + ++  S++ 
Sbjct: 473 --------YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +C+ +  +  G QV A +    LD +  + T+L+D Y KC +++
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/523 (23%), Positives = 234/523 (44%), Gaps = 105/523 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C+   ++ +GKQ+H    K G+L   L + + L+ +Y +CG    A  +F  M
Sbjct: 216 LATGLKACSLCMALDLGKQMHAQAFKLGLL-LDLFVGSALVDLYAKCGEIELASKMFIGM 274

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P +N  +WN ++ G+ + G     L+LF  M +     N+F+   ++ G A +  LK  +
Sbjct: 275 PEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQ 334

Query: 124 TL-----------------------------------FNDMPRRNAIAWNSMIHCYVRNG 148
            +                                   F  + + + + W+++I C  + G
Sbjct: 335 VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQG 394

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + E+++LF  +   L + L  + + + +++ A  +   L+YG+ IH+ +   G + D  
Sbjct: 395 QSEESIKLFHLMR--LGDTLP-NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVA 451

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LV +Y K G  +   ++   M + D    +A +SG  +CG       ++DR     
Sbjct: 452 VSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG-------MYDR----- 499

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                               L +F+ M   G + +  T  S+L +CS L  + +G+QVH 
Sbjct: 500 -------------------PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHA 540

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  K  + D+  V +AL+D Y+K                               C  +ED
Sbjct: 541 HIIKNQLDDNNFVCTALIDMYAK-------------------------------CMYLED 569

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  +  + L +W  +I   +Q     +AL+ F  M +  ++ ++F+LA  +S C++
Sbjct: 570 ADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++SLE G+Q+ + V   G  SD  + ++LVD Y KCG ++  E
Sbjct: 630 LASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 211/491 (42%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C    ++  G+ +H   +K G   +   I   L+ MY +CG   DA+ +F  +
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFS------------------ 105
            + +   W+A+I    + G  E+S++LF++M       N ++                  
Sbjct: 376 KKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQ 435

Query: 106 ------W-----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                 W           N L++ + K G +     L+  M  R+ I+WN+ +      G
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
                + +F  +   L E    + +   +++G+C+ L  + YG+Q+H+HI+ N LD    
Sbjct: 496 MYDRPLTIFYHM---LEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLD---- 548

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                       ++F  +ALI  YA C  + DA   F+R +   
Sbjct: 549 ---------------------------DNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD 581

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              W  +I+ Y   N+  +AL  F +M++ GV  +  TLA  LS CSSL  LE G+Q+H 
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS 641

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G + D+ V SAL+D Y+K                               CG +E+
Sbjct: 642 MVFKSGHVSDMFVGSALVDMYAK-------------------------------CGCMEE 670

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  +  +  I+WN++I G +QNG   +AL  F  M    +  D  +   ++SAC++
Sbjct: 671 AEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSH 730

Query: 449 ISSLELGEQVF 459
              +E G++ F
Sbjct: 731 QGLVEEGKEHF 741



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 72/121 (59%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D+ L  +++ VY+ C     A+ +   MP++ ++SW ++I GL   G   +++ LF  M 
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +  ++F+LA+ + AC+   +L+LG+Q+ A+   +GL  D  + ++LVD Y KCG I+
Sbjct: 206 NEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 489 M 489
           +
Sbjct: 266 L 266


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 1227

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/521 (26%), Positives = 236/521 (45%), Gaps = 107/521 (20%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++  + +LQ C  H  +  GK +H      GI    + +  +L+ MY+ CG   +   +F
Sbjct: 451 LNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGV-LGAKLVFMYVSCGALREGRRIF 509

Query: 65  DEMPRRN-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW------------- 106
           D +   N  F WN M+  + K+G   +S+ LF  M +     N +++             
Sbjct: 510 DHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRV 569

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LI+ + K+GE+ +A  LF+++  R+ ++WNSMI   
Sbjct: 570 GECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGC 629

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V NGF+  A+  F ++   L+ R+  D   L   + ACA++ +L  G+ +H         
Sbjct: 630 VMNGFSHSALEFFVQM---LILRVGVDLATLVNSVAACANVGSLSLGRALH--------- 677

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                G  +   + +   FN  N +L+M               Y+ CG +NDA + F++ 
Sbjct: 678 -----GQGVKACFSREVMFN--NTLLDM---------------YSKCGNLNDAIQAFEKM 715

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
              + V W S+I+ Y+      +A+ LF++M   GV  D  ++ SVL AC+    L+ G+
Sbjct: 716 GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGR 775

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            VH +  K  +   + V++AL+D Y+K G   +A  +FS++ V D +  NTMI       
Sbjct: 776 DVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIG------ 829

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                    G S+N  P EAL LF  M K + R D  ++A ++ 
Sbjct: 830 -------------------------GYSKNSLPNEALKLFAEMQK-ESRPDGITMACLLP 863

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           AC ++++LE+G  +   +   G  S+  ++ +L+D Y KCG
Sbjct: 864 ACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCG 904



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 157/355 (44%), Gaps = 75/355 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   + +C    S+ +G+ LH   +K    +  +   N LL MY +CGN  DA+  F++M
Sbjct: 657 LVNSVAACANVGSLSLGRALHGQGVK-ACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
            ++   SW ++I  +++ G  + +++LF  M                             
Sbjct: 716 GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGR 775

Query: 100 ------QKNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                 +KN+ +      N L+  +AK G ++ A  +F+ +P ++ ++WN+MI  Y +N 
Sbjct: 776 DVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNS 835

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++LF E+  +     + D   +A ++ AC  LAALE G+ IH  IL NG   +  
Sbjct: 836 LPNEALKLFAEMQKES----RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELH 891

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+++Y KCG    A  + +M+ E D                               
Sbjct: 892 VANALIDMYVKCGSLVHARLLFDMIPEKD------------------------------- 920

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            + W  MISG   +    EA+  F KMR  G+  D  T  S+L ACS  G L  G
Sbjct: 921 LITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEG 975



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 162/366 (44%), Gaps = 75/366 (20%)

Query: 128 DMPRRNA-------IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
           D+PR +        +  N+ I  +   G  R AV L +     + ++ + D    ++++ 
Sbjct: 405 DVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLR-----MSQKSELDLNAYSSILQ 459

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
            CA+   L+ GK +HS I  NG+  + VLG+ LV +                        
Sbjct: 460 LCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFM------------------------ 495

Query: 241 LSALISGYANCGKMNDARRVFDRT-TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
                  Y +CG + + RR+FD   +D    +WN M+S Y    +  E++ LF KM++ G
Sbjct: 496 -------YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLG 548

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  ++ T + +L   ++LG +   K++HG   K+G      V ++L+ TY K G    A 
Sbjct: 549 ITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAH 608

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
           KLF EL                                ++ ++SWNSMI G   NG    
Sbjct: 609 KLFDELG-------------------------------DRDVVSWNSMISGCVMNGFSHS 637

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL+ F  M  L + +D  +L + ++ACAN+ SL LG  +  +        + + + +L+D
Sbjct: 638 ALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLD 697

Query: 480 FYCKCG 485
            Y KCG
Sbjct: 698 MYSKCG 703


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 190/395 (48%), Gaps = 69/395 (17%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           LF V  +++D   + LI  +AK G +  AR +F+++  R  ++WNSMI  Y   G A++A
Sbjct: 155 LFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDA 214

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + LF+++     E  + D   L +++GACA L  L  G+ +    +   +   + LGS L
Sbjct: 215 MDLFRKMEE---EGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKL 271

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           + +YGK                               CG ++ ARRVF++      V WN
Sbjct: 272 ITMYGK-------------------------------CGDLDSARRVFNQMIKKDRVAWN 300

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           +MI+ Y  N + +EA  LF +M + GV  DA TL++VLSAC S+G LE GK++  HA ++
Sbjct: 301 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEI 360

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            +  ++ VA+ L+D Y K                               CG IE+A  +F
Sbjct: 361 SLQHNIYVATGLVDMYGK-------------------------------CGHIEEALRVF 389

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             MP K+  +WN+MI   +  G   EAL LF   +++ +     +   V+SAC +   ++
Sbjct: 390 EAMPVKNEATWNAMITAYAHQGHAKEALLLF---DQMPVPPSDVTFIGVLSACVHAGLVD 446

Query: 454 LGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
            G + F  + ++ GL       T+++D   + G +
Sbjct: 447 QGCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLL 481



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 167/385 (43%), Gaps = 70/385 (18%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE-AVRLFKELNSDLV 165
           N LI    + G+   A  L +     N  ++N MI          E A+ L++ +     
Sbjct: 66  NFLIPKAVELGDFNYASFLLSVTEEPNHYSFNYMIRGLTNIWNDHEGALSLYRRMK---Y 122

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L+ D F    V  AC     +  G+ +HS +   GL                      
Sbjct: 123 SGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVGL---------------------- 160

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                    E DD    +LI  YA CG +  AR+VFD  TD  +V WNSMISGY      
Sbjct: 161 ---------ERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRA 211

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC--KVGVIDDVIVAS 343
            +A+ LF KM   G   D  TL S+L AC+ LG L  G+ +   A   K+G+        
Sbjct: 212 KDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGL-------- 263

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
                                     T L + +IT+Y  CG ++ A+ +F  M  K  ++
Sbjct: 264 -------------------------STFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVA 298

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+MI   SQNG   EA  LF  M K  +  D  +L++V+SAC ++ +LELG+++    +
Sbjct: 299 WNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHAS 358

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            I L  +  ++T LVD Y KCG I+
Sbjct: 359 EISLQHNIYVATGLVDMYGKCGHIE 383



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 69/296 (23%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           ++I + +L++ ++  + L    V L    GDFN A+ +L++ +EP+ +  + +I G  N 
Sbjct: 51  REIQAQMLLHSVEKPNFLIPKAVEL----GDFNYASFLLSVTEEPNHYSFNYMIRGLTN- 105

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                              +WN          +   AL L+ +M+ +G+  D  T   V 
Sbjct: 106 -------------------IWN----------DHEGALSLYRRMKYSGLKPDNFTYNFVF 136

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
            AC     +  G+ VH    KVG+  D  ++                             
Sbjct: 137 IACGKREEIGVGRSVHSSLFKVGLERDDHIS----------------------------- 167

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
             +++I +Y+ CG +  A+ +F  + ++  +SWNSMI G S+ G   +A+DLF  M +  
Sbjct: 168 --HSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEG 225

Query: 432 LRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
              D+ +L S++ ACA++  L  G   +  A    IGL +   + + L+  Y KCG
Sbjct: 226 FEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLST--FLGSKLITMYGKCG 279


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 231/522 (44%), Gaps = 111/522 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQ----MYMRCGNPTDALLLFDE 66
           LLQ C +  SI   KQ+H H +  G+L+S  P ++ LL      Y  CG    A  LFDE
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSS--PYSHHLLSSLAAAYAMCGCAPHARKLFDE 81

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF-------------------------NVMPQ- 100
           +   + FSWNAMI  +   G    +L LF                          ++P+ 
Sbjct: 82  LRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 101 --------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                          + F  N L++ +   GE++ AR +F+ M  R  ++WN+MI+ Y +
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NG  +EA+ +F  +    +E    D   + +V+  C+ L  LE G+++H+ + V  L  D
Sbjct: 202 NGCVKEALMVFDWMIGKGIEP---DCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGED 258

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + +SL+++Y KC                               G M++A+ +F     
Sbjct: 259 ISVWNSLLDMYAKC-------------------------------GNMDEAQMIFYEMDK 287

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W +M++GYI N +   ALLL   M+   V  +  TLASVLSAC+SL  L+HG+ +
Sbjct: 288 RDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCL 347

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG A +  +  +VIV +AL+D Y+K                               C  +
Sbjct: 348 HGWAIRQKLESEVIVETALIDMYAK-------------------------------CNNV 376

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             +  +F     +    WN++I G   NG   +A++LF  M    +  +  +L S++ A 
Sbjct: 377 NLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAY 436

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           A ++ L+    +   +   G  S   ++T L+D Y KCG ++
Sbjct: 437 AFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLE 478



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 223/490 (45%), Gaps = 107/490 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C  +    +G  +H   +  G  +S   + N L+ MYM CG    A  +FD M  R
Sbjct: 129 VIKACGDYLLPEMGALIHARTVMSG-FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRER 187

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
              SWN MI G+ K G  +++L +F+ M  K                             
Sbjct: 188 TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVH 247

Query: 102 ---------NDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     D S WN L+  +AK G +  A+ +F +M +R+ ++W +M++ Y+ NG AR
Sbjct: 248 ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDAR 307

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ L + +     E ++ +   LA+V+ ACA L +L++G+ +H   +   L+ + ++ +
Sbjct: 308 SALLLCQMMQ---FESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVET 364

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y K                               C  +N + RVF + +   +  
Sbjct: 365 ALIDMYAK-------------------------------CNNVNLSFRVFSKXSKQRTAP 393

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++ISG I N    +A+ LF +M    V  + +TL S+L A + L  L+  + +HG+  
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G +  + VA+ L+D YSK                               CG +E A +
Sbjct: 454 RSGFLSRIEVATILIDIYSK-------------------------------CGSLESAHN 482

Query: 392 IFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           IF  +P  +K +I+W+++I G   +G    A+ LF  M +  ++ ++ +  S++ AC++ 
Sbjct: 483 IFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHA 542

Query: 450 SSLELGEQVF 459
             ++ G  +F
Sbjct: 543 GLVDEGLGLF 552



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 116/252 (46%), Gaps = 34/252 (13%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           LS+L + YA CG    AR++FD   + S   WN+MI  Y ++    +AL LF +M  +G 
Sbjct: 59  LSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGR 118

Query: 301 -LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              D  T   V+ AC      E G  +H      G   D  V                  
Sbjct: 119 RWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQ----------------- 161

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                         N+++ +Y +CG +E A+ +F  M  ++L+SWN+MI G  +NG   E
Sbjct: 162 --------------NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKE 207

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL +F  M    +  D  ++ SV+  C+ +  LE+G +V A V +  L  D  +  SL+D
Sbjct: 208 ALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLD 267

Query: 480 FYCKCGFIKMDE 491
            Y KCG   MDE
Sbjct: 268 MYAKCG--NMDE 277



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 29/187 (15%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +L   +   S+L  C+S   + + KQ+H H   +G++                       
Sbjct: 14  LLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSS--------------------- 52

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                   Y   LL+++   Y+ CG    A+ +F  + N SL SWN+MI   + +G   +
Sbjct: 53  -------PYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYD 105

Query: 420 ALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           AL LF  M     R  D ++   VI AC +    E+G  + AR  + G DSD  +  SL+
Sbjct: 106 ALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLM 165

Query: 479 DFYCKCG 485
             Y  CG
Sbjct: 166 AMYMNCG 172


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 236/512 (46%), Gaps = 112/512 (21%)

Query: 21  IHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNA 77
           IH+G+ L  H L+ G +L +   +AN LL +Y +C     A  +FD MP   R+  SW A
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQK----NDFS---------------------------- 105
           M     + G + ++L+LF    ++    N F+                            
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 106 --WNM-------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL 156
             W         LI  FAK G+L   R +F+ +  R  + W  +I  Y ++G++ EAV L
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216
           F ++   L    Q D + L++++ AC +L +   G+Q+HS  L  GL+ DS +   LV++
Sbjct: 243 FLDM---LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDM 299

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
           Y K  +  S                            +++AR VF+R    + + W +++
Sbjct: 300 YAKSHNGQS----------------------------LHNAREVFNRMPKHNVMAWTALL 331

Query: 277 SGYIS-NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           SGY+   ++D + ++LF KM   G+  +  T +S+L AC++LG  + G+Q+H H  K  +
Sbjct: 332 SGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNL 391

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
            D  +V +AL                               +++Y+  G IE+A+H F  
Sbjct: 392 ADLNVVGNAL-------------------------------VSMYAESGSIEEARHAFDQ 420

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           +  K+++S++  + G  ++ +  +       + +++L +  F+  S+ISA A++  L  G
Sbjct: 421 LYEKNMVSFSGNLDGDGRSNTYQDY-----QIERMELGISTFTFGSLISAAASVGMLTKG 475

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +++ A     G  SD+ I  SLV  Y +CG++
Sbjct: 476 QRLHALSLKAGFGSDRAIGNSLVSMYSRCGYL 507



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 178/391 (45%), Gaps = 75/391 (19%)

Query: 107 NMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           N L++ ++K   +  AR++F+ MP   R+ ++W +M  C  RNG   EA+RLF E    L
Sbjct: 88  NSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGE---TL 144

Query: 165 VERLQCDAFILATVIGAC--ADLAALEYGKQIHSHILVNGLDF---DSVLGSSLVNLYGK 219
            E L  +AF L     AC  ++L  L  G  +    LV  L F   D  +G +L++++ K
Sbjct: 145 EEGLLPNAFTLCAATQACFASELFHLAGGAVLG---LVFKLGFWGTDVSVGCALIDMFAK 201

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
            GD  +                                RRVFD   + + V+W  +I+ Y
Sbjct: 202 NGDLVAM-------------------------------RRVFDGLFERTVVVWTLLITRY 230

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             +    EA+ LF  M  NG   D  TL+S+LSAC+ LG    G+Q+H  A ++G+  D 
Sbjct: 231 AQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDS 290

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR-IEDAKHIFRTMPN 398
            V+  L+D Y+K                             S  G+ + +A+ +F  MP 
Sbjct: 291 CVSCGLVDMYAK-----------------------------SHNGQSLHNAREVFNRMPK 321

Query: 399 KSLISWNSMIVGLSQNGSPI-EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            ++++W +++ G  Q GS   + + LFC M    +R +  + +S++ ACAN+   + G Q
Sbjct: 322 HNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQ 381

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +        L    ++  +LV  Y + G I+
Sbjct: 382 IHTHCVKSNLADLNVVGNALVSMYAESGSIE 412



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 212/493 (43%), Gaps = 118/493 (23%)

Query: 13  QSCNTHHSIHV--GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           Q+C      H+  G  L L F K G   + + +   L+ M+ + G+      +FD +  R
Sbjct: 160 QACFASELFHLAGGAVLGLVF-KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFER 218

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGE-------- 118
               W  +I  + + G+ +++++LF  M     Q + ++ + ++S   + G         
Sbjct: 219 TVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLH 278

Query: 119 ------------------------------LKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                         L  AR +FN MP+ N +AW +++  YV+ G
Sbjct: 279 SLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRG 338

Query: 149 FAREAVRLF--KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
                V +   K LN    E ++ +    ++++ ACA+L   + G+QIH+H + + L   
Sbjct: 339 SQDNQVMILFCKMLN----EGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADL 394

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           +V+G++LV++Y                               A  G + +AR  FD+  +
Sbjct: 395 NVVGNALVSMY-------------------------------AESGSIEEARHAFDQLYE 423

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V ++  + G   +N   +     +++ R  +     T  S++SA +S+G L  G+++
Sbjct: 424 KNMVSFSGNLDGDGRSNTYQD-----YQIERMELGISTFTFGSLISAAASVGMLTKGQRL 478

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  + K G   D  + ++L+  YS+ G   DAC++F E                      
Sbjct: 479 HALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDE---------------------- 516

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                    M + ++ISW SMI GL+++G    AL+LF +M    ++ +  +  +V+SAC
Sbjct: 517 ---------MNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSAC 567

Query: 447 ANISSLELGEQVF 459
           ++   ++ G++ F
Sbjct: 568 SHAGLVKEGKEHF 580



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 179/410 (43%), Gaps = 75/410 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT---DALLLF 64
           L+ +L +C    S  +G+QLH   L+ G L S   ++  L+ MY +  N     +A  +F
Sbjct: 258 LSSMLSACTELGSFRLGQQLHSLALRLG-LESDSCVSCGLVDMYAKSHNGQSLHNAREVF 316

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSL-----QLFNVMPQKNDFSWNMLISGFAKAGEL 119
           + MP+ N  +W A++ G+++ G ++  +     ++ N   + N  +++ ++   A  G+ 
Sbjct: 317 NRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQ 376

Query: 120 KTARTLFNDMPRRNA----IAWNSMIHCYVRNGFAREAVRLFKEL----------NSD-- 163
            + R +     + N     +  N+++  Y  +G   EA   F +L          N D  
Sbjct: 377 DSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGD 436

Query: 164 ---------LVERLQ--CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
                     +ER++     F   ++I A A +  L  G+++H+  L  G   D  +G+S
Sbjct: 437 GRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNS 496

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++Y +                               CG + DA +VFD   D + + W
Sbjct: 497 LVSMYSR-------------------------------CGYLVDACQVFDEMNDHNVISW 525

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ----VHG 328
            SMISG   +     AL LFH M   GV  +  T  +VLSACS  G ++ GK+    +  
Sbjct: 526 TSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQK 585

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMI 377
           H    G+I  +   + ++D   + G+  DA    +E+    D ++  T++
Sbjct: 586 HH---GLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLL 632



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 17/223 (7%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G++LH   LK G   S   I N L+ MY RCG   DA  +FDEM   N  SW +MI G  
Sbjct: 475 GQRLHALSLKAG-FGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLA 533

Query: 84  KLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA--- 136
           K G+  ++L+LF+ M     + ND ++  ++S  + AG +K  +  F  M + + +    
Sbjct: 534 KHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRM 593

Query: 137 --WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
             +  M+    R+G   +A+    E+        Q DA +  T++GAC     ++ G+  
Sbjct: 594 EHYACMVDLLGRSGLVEDALDFINEMPC------QVDALVWKTLLGACKTHNNMDIGEIA 647

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
            +H+ +     D      L NLY + G ++   ++ ++M++ +
Sbjct: 648 ANHV-IQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKN 689


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/558 (24%), Positives = 258/558 (46%), Gaps = 96/558 (17%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKG----------ILNSTLP--------- 42
           D    + A LL+ C    S++  +Q+H   +  G          +  + LP         
Sbjct: 28  DVSPTHFASLLKECR---SVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKS 84

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS----------- 91
           +   ++  Y+ CG   DAL + + +       WN ++   +K GH +++           
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 92  -----------LQLFNVMP-----------------QKNDFSWNMLISGFAKAGELKTAR 123
                      L+    +P                 + N F  N L++ +++ G L+ A 
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDAS 204

Query: 124 TLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL---QCDAFILAT 177
            +F+++ R+   + I+WNS++  +V+    R A+ LF E++  + E+    + D   +  
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVN 264

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           ++ ACA L AL   K+IHS+ + NG   D+ + ++L++ Y KCG  N A +V N+M+  D
Sbjct: 265 ILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKD 324

Query: 238 DFCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
               +A+++GY   G    A  +F+           + W+++I+GY       EAL  F 
Sbjct: 325 VVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQ 384

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M  +G   ++ T+ S+LSAC+SLG L  G ++H ++ K            LL   +  G
Sbjct: 385 QMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLK----------KCLLSLDNDFG 434

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGL 411
              D   L         ++ N +I +YS C   + A+ IF ++P   +++++W  MI G 
Sbjct: 435 GDGDGEDL---------MVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGY 485

Query: 412 SQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           +Q G   +AL +F  M      +  + ++++ ++ ACA++++L +G+Q+ A VT      
Sbjct: 486 AQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYE 545

Query: 470 DQI--ISTSLVDFYCKCG 485
             +  ++  L+D Y KCG
Sbjct: 546 PSVYFVANCLIDMYSKCG 563



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 205/437 (46%), Gaps = 86/437 (19%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  NA+I+ + K G    ++++FNVM  K+  SWN +++G+ ++G    A  LF +M 
Sbjct: 293 DAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMR 352

Query: 131 RRN----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           + N     I W+++I  Y + G ++EA+  F+++   +++  + ++  + +++ ACA L 
Sbjct: 353 KENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM---ILDGSEPNSVTIISLLSACASLG 409

Query: 187 ALEYGKQIHSHILVNGL------------DFDSVLGSSLVNLYGKCGDFNSANQVLNMM- 233
           AL  G +IH++ L   L              D ++ ++L+++Y KC  F +A  + + + 
Sbjct: 410 ALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIP 469

Query: 234 -KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
            +E +    + +I GYA  G  NDA ++F           + MIS               
Sbjct: 470 RRERNVVTWTVMIGGYAQYGDSNDALKIF-----------SEMIS--------------- 503

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
              +   V  +A T++ +L AC+ L  L  GKQ+H +                  T    
Sbjct: 504 ---KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYV-----------------TRHHE 543

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
             PS          VY   + N +I +YS CG ++ A+++F +MP ++ +SW SM+ G  
Sbjct: 544 YEPS----------VY--FVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
            +G   EALD+F  M K     D  S   ++ AC++   ++ G   F    I+  D D +
Sbjct: 592 MHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYF---DIMRRDYDVV 648

Query: 473 ISTS----LVDFYCKCG 485
            S      ++D   +CG
Sbjct: 649 ASAEHYACVIDLLARCG 665



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 187/405 (46%), Gaps = 59/405 (14%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           +++ +   G  K A ++   +    A+ WN ++  +++ G    A+ +   +   L    
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRM---LRAGT 145

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + D F L   + AC +L +   G+ +H  I  NG + +  + ++LV +Y +CG       
Sbjct: 146 KPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGS------ 199

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNED 285
                                    + DA  VFD  T       + WNS+++ ++  +  
Sbjct: 200 -------------------------LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNP 234

Query: 286 TEALLLFHKM------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             AL LF +M      +      D  ++ ++L AC+SL  L   K++H +A + G   D 
Sbjct: 235 RTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADA 294

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V +AL+DTY+K G  +DA K+F+ ++  D +  N M+T Y+  G    A  +F  M  +
Sbjct: 295 FVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKE 354

Query: 400 SL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           ++    I+W+++I G +Q G   EALD F  M       +  ++ S++SACA++ +L  G
Sbjct: 355 NIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQG 414

Query: 456 EQVFA---RVTIIGLDSDQ---------IISTSLVDFYCKCGFIK 488
            ++ A   +  ++ LD+D          ++  +L+D Y KC   K
Sbjct: 415 MEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFK 459



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 67/298 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILN-----------STLPIANRLLQMYMRCGNPTD 59
           LL +C +  ++  G ++H + LKK +L+             L + N L+ MY +C +   
Sbjct: 401 LLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKA 460

Query: 60  ALLLFDEMPRR--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-------------- 103
           A  +FD +PRR  N  +W  MI G+ + G    +L++F+ M  K                
Sbjct: 461 ARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILM 520

Query: 104 -----------------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNA 134
                                        F  N LI  ++K G++ TAR +F+ MP+RN 
Sbjct: 521 ACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNE 580

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           ++W SM+  Y  +G  +EA+ +F ++          D      ++ AC+    ++ G   
Sbjct: 581 VSWTSMMSGYGMHGRGKEALDIFDKMQK---AGFVPDDISFLVLLYACSHSGMVDQGL-- 635

Query: 195 HSHILVNGLDFDSVLGSS----LVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 247
            ++  +   D+D V  +     +++L  +CG  + A + +  M  EP      AL+S 
Sbjct: 636 -NYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L +C    ++ +GKQ+H +  +      ++  +AN L+ MY +CG+   A  +FD MP+
Sbjct: 518 ILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPK 577

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTL 125
           RN  SW +M+ G+   G  +++L +F+ M +     +D S+ +L+   + +G +      
Sbjct: 578 RNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNY 637

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           F+ M R   +  ++  +  V +  AR   RL K   +     ++  A I   ++ AC
Sbjct: 638 FDIMRRDYDVVASAEHYACVIDLLARCG-RLDKAWKTIQEMPMEPSAVIWVALLSAC 693


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 195/387 (50%), Gaps = 39/387 (10%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N +I  +  +G  + + + F+ +P K+   W  +I G  + G L  AR L    P RN +
Sbjct: 144 NPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 203

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W S+I  Y R G   +AV  F  + SD V     D   +   + AC+ L  L+ G+ +H
Sbjct: 204 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVAP---DEVAVIGALSACSKLKNLDLGRLLH 260

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSALISGYANCG 252
             +    +     L  +L+++Y KCGD   A  V + +   ++P+ +  +A+I GY   G
Sbjct: 261 LLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPW--NAIIDGYCKLG 318

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            ++ AR +FD+      + +NSMI+GYI +    +AL LF +MRR+G+  D  T+ S+L+
Sbjct: 319 HVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLT 378

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+SLG L HG+ +H    +  V +DV + +ALLD Y K                     
Sbjct: 379 ACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMK--------------------- 417

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                     CGR+++A  +F  M  + + +W +MI GL+ NG   +AL+ FC M +   
Sbjct: 418 ----------CGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGF 467

Query: 433 RMDKFSLASVISACANISSLELGEQVF 459
           +    +  +V++AC++ S L+ G   F
Sbjct: 468 QPTSVTYIAVLTACSHSSLLDEGRLHF 494



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 152/288 (52%), Gaps = 7/288 (2%)

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            ++ + L+++Y   G  + A +  + +   D    + +I G    G +++ARR+  +  +
Sbjct: 140 PLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPE 199

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V W S+I+GY       +A+  F+ M  +GV  D   +   LSACS L  L+ G+ +
Sbjct: 200 RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLL 259

Query: 327 HGHAC--KVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSC 383
           H      ++ + D+++VA  L+D Y+K G  + A  +F  + +       N +I  Y   
Sbjct: 260 HLLVGQKRIRMTDNLVVA--LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKL 317

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G ++ A+ +F  M  + +I++NSMI G   +G   +AL LF  M +  +R D F++ S++
Sbjct: 318 GHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLL 377

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +ACA++ +L  G  + A +    ++ D  + T+L+D Y KCG  ++DE
Sbjct: 378 TACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCG--RVDE 423


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 230/524 (43%), Gaps = 108/524 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL       S++   Q+H H +K G  +STL + N LL  Y +  +   A  LF  M
Sbjct: 142 LATLLSGFTEFESVNEVAQVHGHVVKVG-YDSTLMVCNSLLDSYCKTRSLGLACHLFKHM 200

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             ++  ++NA++ G+ K G    ++ LF  M                             
Sbjct: 201 AEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQ 260

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K +F WN+ ++      ++K   +  AR LF +MP  + I++N +I C   NG
Sbjct: 261 QVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNG 320

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              E++ LF+EL     +R Q   F  AT++   A+   LE G+QIHS  +V     + +
Sbjct: 321 RVEESLELFRELQFTRFDRRQ---FPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVL 377

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G+SLV++Y K                               C K  +A R+F      S
Sbjct: 378 VGNSLVDMYAK-------------------------------CDKFGEANRIFADLAHQS 406

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           SV W ++ISGY+      + L LF +M R  +  D++T AS+L AC++L  L  GKQ+H 
Sbjct: 407 SVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHS 466

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              + G + +V   SAL+D Y+K G   +A ++F E+ V +++  N +I+ Y        
Sbjct: 467 RIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAY-------- 518

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                  +QNG    AL  F  M    L+ +  S  S++ AC++
Sbjct: 519 -----------------------AQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSH 555

Query: 449 ISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              +E G Q F  +T +  L+  +    S+VD  C+ G  + DE
Sbjct: 556 CGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSG--RFDE 597



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 189/414 (45%), Gaps = 65/414 (15%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N   +N  ++  ++ G    + +LF+ MP KN  S N +I G+ K+G L TAR+LF+ M 
Sbjct: 41  NTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMV 100

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           +R+ + W  +I  Y ++    EA  LF ++       +  D   LAT++    +  ++  
Sbjct: 101 QRSVVTWTMLIGGYAQHNRFLEAFNLFADM---CRHGMVPDHITLATLLSGFTEFESVNE 157

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
             Q+H H++  G D   ++ +SL++ Y K      A  +   M E D+   +AL++GY+ 
Sbjct: 158 VAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSK 217

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G  +D                               A+ LF KM+  G      T A+V
Sbjct: 218 EGFNHD-------------------------------AINLFFKMQDLGFRPSEFTFAAV 246

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L+A   +  +E G+QVH    K   + +V VA+ALLD YSK     +A KLF E+   D 
Sbjct: 247 LTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDG 306

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           I  N +IT  +  GR+E++  +FR +                                + 
Sbjct: 307 ISYNVLITCCAWNGRVEESLELFREL-----------------------------QFTRF 337

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           D R  +F  A+++S  AN  +LE+G Q+ ++  +    S+ ++  SLVD Y KC
Sbjct: 338 DRR--QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKC 389



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 31/292 (10%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           + + + ++  G D ++   +  V  + + GD  +A ++ + M   +    + +I GY   
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G ++ AR +FD     S V W  +I GY  +N   EA  LF  M R+G++ D  TLA++L
Sbjct: 87  GNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLL 146

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           S  +    +    QVHGH  KVG    ++V ++LLD+Y K      AC LF  +   D +
Sbjct: 147 SGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNV 206

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
             N ++T                               G S+ G   +A++LF  M  L 
Sbjct: 207 TFNALLT-------------------------------GYSKEGFNHDAINLFFKMQDLG 235

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
            R  +F+ A+V++A   +  +E G+QV + V       +  ++ +L+DFY K
Sbjct: 236 FRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSK 287



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%)

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
           H + V     K G   +    +  + T+ +RG    A KLF E+   + I  NTMI  Y 
Sbjct: 25  HFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYL 84

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             G +  A+ +F +M  +S+++W  +I G +Q+   +EA +LF +M +  +  D  +LA+
Sbjct: 85  KSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLAT 144

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           ++S      S+    QV   V  +G DS  ++  SL+D YCK
Sbjct: 145 LLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCK 186


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/481 (28%), Positives = 212/481 (44%), Gaps = 81/481 (16%)

Query: 75  WNAMIEGFMKLG---HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
           W A +E F  L    H E S          N  S N+ IS   + G L  A+TLFN+MP 
Sbjct: 16  WKACLELFSTLCEGLHTENS----------NIISTNIYISRHVRDGHLDLAQTLFNEMPV 65

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+ ++WN MI  Y + G   EA+ L  E++ + V   + +    ++++  CA       G
Sbjct: 66  RSVVSWNIMISGYSKFGKYSEALNLASEMHCNNV---KLNETTFSSLLSICAHSGCSSEG 122

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           KQ H  +L +GL     +GS+LV  Y    D + A QV + + + +D     L+ GY  C
Sbjct: 123 KQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKC 182

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE-ALLLFHKMRRNGVLE-DASTLAS 309
             M+DA  +F +      V W +MIS Y  +  + +  L LF  MR NG +E +  T  S
Sbjct: 183 NLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDS 242

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK------------------ 351
           V+ AC  + +L  GK VHG   K G   D  V SAL+  Y +                  
Sbjct: 243 VVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDSAKAVYDSMERPC 302

Query: 352 -------------RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
                         G  +DA ++F +L+  + +  N M+  Y++ GRIE +K +F  M +
Sbjct: 303 LKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTH 362

Query: 399 KSL--------------------------------ISWNSMIVGLSQNGSPIEALDLFCN 426
           K+                                 ++WNSMI G  QN     AL L+  
Sbjct: 363 KTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYIT 422

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M +  +   + + +++  AC  +  ++LG+ +         DS+  + TSL+D Y KCG 
Sbjct: 423 MCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGS 482

Query: 487 I 487
           I
Sbjct: 483 I 483



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 130/564 (23%), Positives = 227/564 (40%), Gaps = 138/564 (24%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ H   LK G            LQ++ R G+                    A++  + 
Sbjct: 122 GKQFHCLVLKSG------------LQIFERVGS--------------------ALVYFYA 149

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
            +     + Q+F+ +  KND  W++L+ G+ K   +  A  LF  +P R+ +AW +MI  
Sbjct: 150 NINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISA 209

Query: 144 YVRNGF-AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
           Y R+    +  + LF  +  +    ++ + F   +V+ AC  +  L +GK +H  +   G
Sbjct: 210 YARSEHNCKRGLELFCSMRMN--GEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYG 267

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP----------------------DDFC 240
             FD  + S+L+  Y +C   +SA  V + M+ P                      + FC
Sbjct: 268 FHFDHSVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFC 327

Query: 241 ---------LSALISGYANCGKMNDARRVFDRTTDTSS---------------------- 269
                     + ++ GYA  G++  ++R+F+R T  ++                      
Sbjct: 328 KLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKL 387

Query: 270 ----------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                     V WNSMISGYI N++   AL L+  M R  V    ST +++  AC+ L +
Sbjct: 388 FESVKSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEY 447

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           ++ G+ +H HA +     +V V ++L+D Y+K G   DA   F+ + + +      +I  
Sbjct: 448 IQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCLPNVAAFTALING 507

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL----SQNGSPIEALDLFCNMNK------ 429
           Y   G   +A  +F  M    +    + ++G+    S  G   E + +F +M K      
Sbjct: 508 YVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIP 567

Query: 430 ---------------------------LDLRMDKFSLASVISACANISSLELGEQVFARV 462
                                      + +  D+    ++++AC     LELGE V  +V
Sbjct: 568 TLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESVAKKV 627

Query: 463 TIIGLDSDQIIS-TSLVDFYCKCG 485
             + LD   I +   L + Y K G
Sbjct: 628 --LSLDPKAISAYIILSNIYAKLG 649


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 200/387 (51%), Gaps = 11/387 (2%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           ++F  N L+  +++ G    A  +F+++ + NA  W S+IH YV N    EA  LF ++ 
Sbjct: 34  SEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMR 93

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            + +  L    F +++V+ A A L   + G+ ++  +L  G  FD ++ +S+++L+ +C 
Sbjct: 94  REPISVLN---FTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCR 150

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
             ++A Q  + M E D    + +ISGY N  +++ AR+ FDR  + + V W SMI GY+ 
Sbjct: 151 KVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVK 210

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
             +  EA +LF  M     ++D ++   ++S    +G   + + + G       I D   
Sbjct: 211 AGDMAEAQVLFDSMP----VKDLASWNVMVSGYMDIGDCVNARIIFGKM----PIHDTGS 262

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            + ++  + K G    A   F  +   + I    M+  Y   G    A+ +F  MP K+L
Sbjct: 263 WNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNL 322

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ++W++MI G ++NG P++AL+LF    + D++ D+  +  +ISAC+ +  ++  E +   
Sbjct: 323 VTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHN 382

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
                L SD  + TSL+D Y KCG I+
Sbjct: 383 YVGPSLLSDLRVFTSLIDMYAKCGSIE 409



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 205/464 (44%), Gaps = 76/464 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G Q    F+ K      L + N +L ++MRC     A   FDEM  ++  SWN MI G+ 
Sbjct: 119 GGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYG 178

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                + + + F+ MP++N  SW  +I G+ KAG++  A+ LF+ MP ++  +WN M+  
Sbjct: 179 NNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSG 238

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK-QIHSHILVNG 202
           Y+                                 IG C + A + +GK  IH       
Sbjct: 239 YMD--------------------------------IGDCVN-ARIIFGKMPIH------- 258

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
              D+   + +++ + K G+  SA    + M   +      ++ GY   G  N AR +FD
Sbjct: 259 ---DTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFD 315

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
           +    + V W++MI GY  N +  +AL LF + +   +  D + +  ++SACS LG ++ 
Sbjct: 316 QMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDA 375

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
            + +  +     ++ D+ V ++L+D Y+K                               
Sbjct: 376 AESIIHNYVGPSLLSDLRVFTSLIDMYAK------------------------------- 404

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG IE A  +F     K L+ +++MI  L+ +G   +A+ LF  M + +++ D  +   V
Sbjct: 405 CGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGV 464

Query: 443 ISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG 485
           ++AC +   ++ G + F ++T   G+   +     +VD   + G
Sbjct: 465 LTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVG 508


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 177/351 (50%), Gaps = 39/351 (11%)

Query: 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
           + +G +  A  LF  MP  N  +WN++I  + R+   + A+ LF ++   L  ++Q    
Sbjct: 72  SPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDM---LYSQIQPQYL 128

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
              +V  A A L    YG Q+H  ++  GL  D  + ++++ +Y   G  + A +V +  
Sbjct: 129 TYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGK 188

Query: 234 K----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
           K    + D   ++++I GYA CG+++++R +FD     +SV WNSMISGY+ N +  EAL
Sbjct: 189 KLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEAL 248

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF+KM+  G      T+ S+L+AC+ LG L+HGK VH +  +     +VIV +A++D Y
Sbjct: 249 ELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMY 308

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K                               CG +E+A  +F T P + L  WNS+I+
Sbjct: 309 CK-------------------------------CGSVENAVEVFETCPRRGLSCWNSIII 337

Query: 410 GLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVF 459
           GL+ NG   EA + F  +     L+ D  S   V++AC ++ ++      F
Sbjct: 338 GLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYF 388



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 139/241 (57%), Gaps = 4/241 (1%)

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G +N A ++F R  + +   WN++I  +  ++    A+ LF  M  + +     T  SV 
Sbjct: 75  GNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVF 134

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS----ELKV 367
            A + LG   +G Q+HG   K+G+ +D  + + ++  Y+  G+ S+A ++F     EL  
Sbjct: 135 KAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYD 194

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           +D + +N+MI  Y+ CG I++++++F  M  ++ +SWNSMI G  +NG  +EAL+LF  M
Sbjct: 195 HDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKM 254

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
                 + +F++ S+++ACA++ +L+ G+ V   +     + + I+ T+++D YCKCG +
Sbjct: 255 QVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSV 314

Query: 488 K 488
           +
Sbjct: 315 E 315



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 75/347 (21%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           H G QLH   +K G+ N    I N ++ MY   G  ++A  +FD                
Sbjct: 144 HYGAQLHGRVVKLGLQNDQF-ICNTIIYMYANGGLMSEARRVFDG--------------- 187

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                   K L+L++     +  + N +I G+AK GE+  +R LF+DM  R +++WNSMI
Sbjct: 188 --------KKLELYD----HDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMI 235

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             YVRNG   EA+ LF ++    VE  +   F + +++ ACA L AL++GK +H +I  N
Sbjct: 236 SGYVRNGKLMEALELFNKMQ---VEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRN 292

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
             + + ++ ++++++Y KCG                                + +A  VF
Sbjct: 293 HFELNVIVVTAIIDMYCKCGS-------------------------------VENAVEVF 321

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFL 320
           +         WNS+I G   N  + EA   F K+  + +L+ D+ +   VL+AC  LG +
Sbjct: 322 ETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAI 381

Query: 321 EHGK----------QVHGHACKVGVIDDVIVASALLDTYSK--RGMP 355
              +          ++         I DV+  + LL+   +  +GMP
Sbjct: 382 NKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMP 428



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 120/278 (43%), Gaps = 49/278 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----- 99
           N ++  Y +CG   ++  LFD+M  R   SWN+MI G+++ G   ++L+LFN M      
Sbjct: 201 NSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFE 260

Query: 100 -----------------------------QKNDFSWNML-----ISGFAKAGELKTARTL 125
                                        ++N F  N++     I  + K G ++ A  +
Sbjct: 261 VSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEV 320

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F   PRR    WNS+I     NG  REA   F +L S   + L+ D+     V+ AC  L
Sbjct: 321 FETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESS--KLLKPDSVSFIGVLTACKHL 378

Query: 186 AALEYGKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLS 242
            A+   +  +  +++N  + +  +   + +V++ G+ G    A +++  M  +PD     
Sbjct: 379 GAINKARD-YFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWG 437

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           +L+S       +  ARR   R  + +     S  SGY+
Sbjct: 438 SLLSSCRKHRNVQIARRAAQRVYELNP----SDASGYV 471



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%)

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           S  G I  A  +F  MPN +L SWN++I   S++ +P  A+ LF +M    ++    +  
Sbjct: 72  SPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYP 131

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           SV  A A +     G Q+  RV  +GL +DQ I  +++  Y   G +
Sbjct: 132 SVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLM 178


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 223/478 (46%), Gaps = 104/478 (21%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF----------- 95
           L+++Y   G   DA  +FDE+P R+   WN M+ G++K G  + ++  F           
Sbjct: 153 LIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVN 212

Query: 96  --------NVMPQKNDFSW--------------------NMLISGFAKAGELKTARTLFN 127
                   ++   + +F                      N L++ ++K G L  AR LFN
Sbjct: 213 SVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFN 272

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP+ + + WN +I  YV+NGF  EA  LF   N+ +   ++ D+   A+ + +  +  +
Sbjct: 273 TMPQTDTVTWNGLIAGYVQNGFTDEAAPLF---NAMISAGVKPDSVTFASFLPSILESGS 329

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L + K++HS+I+ + + FD  L S+L+++Y K                            
Sbjct: 330 LRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKG--------------------------- 362

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
               G +  AR++F +       +  +MISGY+ +  + +A+  F  + + G++ ++ T+
Sbjct: 363 ----GDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTM 418

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ASVL AC+++  L+ GK++H H  K  + + V V SA+ D Y+K                
Sbjct: 419 ASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAK---------------- 462

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                          CGR++ A   FR M ++  + WNSMI   SQNG P  A+DLF  M
Sbjct: 463 ---------------CGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQM 507

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                + D  SL+S +SA AN+ +L  G+++   V      SD  ++++L+D Y KCG
Sbjct: 508 GMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCG 565



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 224/524 (42%), Gaps = 105/524 (20%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D+    L  L ++C+    +   +Q+H   +  G+ +   P ++R+L +Y+ CG   DA
Sbjct: 7   LDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAP-SSRVLGLYVLCGRFRDA 65

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW-------- 106
             LF E+  R    WN MI G   LG  + +L  +      NV P K  F +        
Sbjct: 66  GNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGL 125

Query: 107 -------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                    + LI  +A  G ++ AR +F+++P R+ I WN M+
Sbjct: 126 NNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVML 185

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             YV++G    A+  F E+ +        ++     ++  CA       G Q+H  ++ +
Sbjct: 186 RGYVKSGDFDNAIGTFCEMRTSYS---MVNSVTYTCILSICATRGNFCAGTQLHGLVIGS 242

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G +FD  + ++LV +Y KC                               G +  AR++F
Sbjct: 243 GFEFDPQVANTLVAMYSKC-------------------------------GNLLYARKLF 271

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           +    T +V WN +I+GY+ N    EA  LF+ M   GV  D+ T AS L +    G L 
Sbjct: 272 NTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLR 331

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
           H K+VH +  +  V  DV + SAL+D Y K G    A K+F +  + D  +   MI+ Y 
Sbjct: 332 HCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYV 391

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             G   DA + FR +  + +++                               +  ++AS
Sbjct: 392 LHGLNIDAINTFRWLIQEGMVT-------------------------------NSLTMAS 420

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           V+ ACA +++L+ G+++   +    L++   + +++ D Y KCG
Sbjct: 421 VLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCG 464



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 225/515 (43%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C T  +   G QLH   +  G       +AN L+ MY +CGN   A  LF+ MP+ 
Sbjct: 219 ILSICATRGNFCAGTQLHGLVIGSG-FEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQT 277

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------------- 105
           +  +WN +I G+++ G  +++  LFN M      P    F+                   
Sbjct: 278 DTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVH 337

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + LI  + K G+++ AR +F      +     +MI  YV +G   
Sbjct: 338 SYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNI 397

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+  F+ L   + E +  ++  +A+V+ ACA +AAL+ GK++H HIL   L+    +GS
Sbjct: 398 DAINTFRWL---IQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGS 454

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           ++ ++Y K                               CG+++ A   F R +D  SV 
Sbjct: 455 AITDMYAK-------------------------------CGRLDLAYEFFRRMSDRDSVC 483

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNSMIS +  N +   A+ LF +M  +G   D+ +L+S LSA ++L  L +GK++HG+  
Sbjct: 484 WNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVI 543

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +     D  VAS L+D YSK                               CG +  A  
Sbjct: 544 RNAFSSDTFVASTLIDMYSK-------------------------------CGNLALAWC 572

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  M  K+ +SWNS+I     +G P E LDL+  M +  +  D  +   +ISAC +   
Sbjct: 573 VFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGL 632

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG 485
           ++ G   F  +T   G+ +       +VD Y + G
Sbjct: 633 VDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAG 667



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 158/381 (41%), Gaps = 67/381 (17%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIH-CYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           G  + A  LF ++  R A+ WN MI   Y+   F    +  FK L S++      D +  
Sbjct: 60  GRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSP----DKYTF 115

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             VI AC  L  +     +H      G   D   GS+L+ L                   
Sbjct: 116 PYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKL------------------- 156

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                       YA+ G + DARRVFD      +++WN M+ GY+ + +   A+  F +M
Sbjct: 157 ------------YADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEM 204

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R +  + ++ T   +LS C++ G    G Q+HG          +++ S            
Sbjct: 205 RTSYSMVNSVTYTCILSICATRGNFCAGTQLHG----------LVIGSGF---------- 244

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                       +D  + NT++ +YS CG +  A+ +F TMP    ++WN +I G  QNG
Sbjct: 245 -----------EFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNG 293

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EA  LF  M    ++ D  + AS + +     SL   ++V + +    +  D  + +
Sbjct: 294 FTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKS 353

Query: 476 SLVDFYCKCGFIKMDEYYLMQ 496
           +L+D Y K G ++M      Q
Sbjct: 354 ALIDVYFKGGDVEMARKIFQQ 374



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 133/296 (44%), Gaps = 44/296 (14%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK G L  A   F  M  R+++ WNSMI  + +NG    A+ LF+++    +   + D+
Sbjct: 460 YAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMG---MSGAKFDS 516

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
             L++ + A A+L AL YGK++H +++ N    D+ + S+L+++                
Sbjct: 517 VSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDM---------------- 560

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                          Y+ CG +  A  VF+     + V WNS+I+ Y ++    E L L+
Sbjct: 561 ---------------YSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLY 605

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC---KVGVIDDVIVASALLDTY 349
           H+M R G+  D  T   ++SAC   G ++ G  +H   C   + G+   +   + ++D Y
Sbjct: 606 HEMLRAGIHPDHVTFLVIISACGHAGLVDEG--IHYFHCMTREYGIGARMEHYACMVDLY 663

Query: 350 SKRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIEDAK----HIFRTMPNKS 400
            + G   +A      +    D  +  T++      G +E AK    H+    P  S
Sbjct: 664 GRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNS 719



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 31/184 (16%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           + L S+  ACS    ++  +QVH     VG + DV   S+                    
Sbjct: 12  TQLESLFRACSDASMVQQARQVHTQVI-VGGMGDVCAPSS-------------------- 50

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                      ++ +Y  CGR  DA ++F  +  +  + WN MI GL   G    AL  +
Sbjct: 51  ----------RVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFY 100

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M   ++  DK++   VI AC  ++++ L   V      +G   D    ++L+  Y   
Sbjct: 101 FKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADN 160

Query: 485 GFIK 488
           G+I+
Sbjct: 161 GYIR 164


>gi|255562005|ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538815|gb|EEF40415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 585

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 245/522 (46%), Gaps = 108/522 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP- 68
           LL+SC   ++   GK +H    + G+ L+S   I N L+ +Y +CG    A  +F  M  
Sbjct: 81  LLKSCIRSNNFQKGKLVHNCLTQSGLELDSV--ILNSLISLYSKCGELNSANDIFISMGN 138

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------PQKNDFSWNML 109
           +R+  SW+A+I  +   G +  +++++  M                     + +FS+  +
Sbjct: 139 KRDLVSWSALISCYATNGLEFDAIRVYIDMLVSGFFPNEYCYSAVIKSCSNRENFSYGEI 198

Query: 110 ISG---------------------FAKA-GELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
           I G                     +AK  G+++ A  +F++M  RN + W  MI  + + 
Sbjct: 199 IFGSLIKCGYLNSHVCVGCALIDMYAKGCGDVEGACKVFDNMSERNIVTWTLMISRFQQL 258

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G+ R+A+ LF  +   +      D + L+ V+ ACA+L  L  GK++HS  + +GL +D 
Sbjct: 259 GYYRDAIDLFNHM---IFSGFMPDNYTLSGVVSACAELGLLSLGKELHSWAIKSGLVYDV 315

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            +G SLV++Y KC                            A  G ++D+R+VFDR T+ 
Sbjct: 316 CVGCSLVDMYAKC----------------------------AVDGSLDDSRKVFDRMTNH 347

Query: 268 SSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           + + W ++I+GY+ N   D EA  LF +M    V  +  T +S+L AC++L  L  G+Q 
Sbjct: 348 NVMSWTAIITGYVQNGRSDMEATELFLEMIEGHVKPNHFTFSSILKACANLSDLHLGEQF 407

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           + HA K+G      V                                N++I++YS C  +
Sbjct: 408 YAHAVKLGFASVNCVG-------------------------------NSLISMYSRCDNM 436

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           E+A+  F  +  K+L+S+N+++   ++  +  EA +LF  +      ++ F+ AS++S  
Sbjct: 437 ENARKAFDVLFEKNLVSYNTIVEAYAKGLNSEEAFELFNEIEDTGFVVNAFTFASLLSGA 496

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++I ++  GEQ+ AR+      ++  IS +L+  Y +CG I+
Sbjct: 497 SSIGAIGKGEQIHARILKSDFKTNLHISNALISMYSRCGDIE 538



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 223/452 (49%), Gaps = 74/452 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNC----FSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           N  L  +++ G+ + A++  D M + N      +++ +++  ++  + +K   + N + Q
Sbjct: 44  NTRLINHLKAGHLSKAIIALDVMTQNNTHPDLITYSLLLKSCIRSNNFQKGKLVHNCLTQ 103

Query: 101 K----NDFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVR 155
                +    N LIS ++K GEL +A  +F  M  +R+ ++W+++I CY  NG   +A+R
Sbjct: 104 SGLELDSVILNSLISLYSKCGELNSANDIFISMGNKRDLVSWSALISCYATNGLEFDAIR 163

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           ++ ++   LV     + +  + VI +C++     YG+ I          F S++      
Sbjct: 164 VYIDM---LVSGFFPNEYCYSAVIKSCSNRENFSYGEII----------FGSLI------ 204

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLS-ALISGYA-NCGKMNDARRVFDRTTDTSSVMWN 273
              KCG  NS              C+  ALI  YA  CG +  A +VFD  ++ + V W 
Sbjct: 205 ---KCGYLNS------------HVCVGCALIDMYAKGCGDVEGACKVFDNMSERNIVTWT 249

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
            MIS +       +A+ LF+ M  +G + D  TL+ V+SAC+ LG L  GK++H  A K 
Sbjct: 250 LMISRFQQLGYYRDAIDLFNHMIFSGFMPDNYTLSGVVSACAELGLLSLGKELHSWAIKS 309

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G++ DV V  +L+D Y+K  +                             G ++D++ +F
Sbjct: 310 GLVYDVCVGCSLVDMYAKCAVD----------------------------GSLDDSRKVF 341

Query: 394 RTMPNKSLISWNSMIVGLSQNG-SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
             M N +++SW ++I G  QNG S +EA +LF  M +  ++ + F+ +S++ ACAN+S L
Sbjct: 342 DRMTNHNVMSWTAIITGYVQNGRSDMEATELFLEMIEGHVKPNHFTFSSILKACANLSDL 401

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            LGEQ +A    +G  S   +  SL+  Y +C
Sbjct: 402 HLGEQFYAHAVKLGFASVNCVGNSLISMYSRC 433



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 206/461 (44%), Gaps = 109/461 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDEMPR 69
           +++SC+   +   G+ +    +K G LNS + +   L+ MY + CG+   A  +FD M  
Sbjct: 183 VIKSCSNRENFSYGEIIFGSLIKCGYLNSHVCVGCALIDMYAKGCGDVEGACKVFDNMSE 242

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQ--------------------KND 103
           RN  +W  MI  F +LG+   ++ LFN       MP                     K  
Sbjct: 243 RNIVTWTLMISRFQQLGYYRDAIDLFNHMIFSGFMPDNYTLSGVVSACAELGLLSLGKEL 302

Query: 104 FSWNM-------------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
            SW +             L+  +AK    G L  +R +F+ M   N ++W ++I  YV+N
Sbjct: 303 HSWAIKSGLVYDVCVGCSLVDMYAKCAVDGSLDDSRKVFDRMTNHNVMSWTAIITGYVQN 362

Query: 148 GFA-REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           G +  EA  LF E+   +   ++ + F  ++++ ACA+L+ L  G+Q ++H +       
Sbjct: 363 GRSDMEATELFLEM---IEGHVKPNHFTFSSILKACANLSDLHLGEQFYAHAVK------ 413

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             LG + VN  G                       ++LIS Y+ C  M +AR+ FD   +
Sbjct: 414 --LGFASVNCVG-----------------------NSLISMYSRCDNMENARKAFDVLFE 448

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V +N+++  Y       EA  LF+++   G + +A T AS+LS  SS+G +  G+Q+
Sbjct: 449 KNLVSYNTIVEAYAKGLNSEEAFELFNEIEDTGFVVNAFTFASLLSGASSIGAIGKGEQI 508

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    K     ++ +++AL+  YS+                               CG I
Sbjct: 509 HARILKSDFKTNLHISNALISMYSR-------------------------------CGDI 537

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           E A  +F  M ++++ISW SMI G +++G  + AL+ F  M
Sbjct: 538 EAAFQVFNGMGDRNVISWTSMITGYAKHGFAVRALETFHKM 578



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 146/308 (47%), Gaps = 49/308 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
           L+ ++ +C     + +GK+LH   +K G++   + +   L+ MY +C   G+  D+  +F
Sbjct: 283 LSGVVSACAELGLLSLGKELHSWAIKSGLVYD-VCVGCSLVDMYAKCAVDGSLDDSRKVF 341

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKE-KSLQLF------NVMPQKNDFS------------ 105
           D M   N  SW A+I G+++ G  + ++ +LF      +V P    FS            
Sbjct: 342 DRMTNHNVMSWTAIITGYVQNGRSDMEATELFLEMIEGHVKPNHFTFSSILKACANLSDL 401

Query: 106 ---------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                 N LIS +++   ++ AR  F+ +  +N +++N+++  Y
Sbjct: 402 HLGEQFYAHAVKLGFASVNCVGNSLISMYSRCDNMENARKAFDVLFEKNLVSYNTIVEAY 461

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            +   + EA  LF E+          +AF  A+++   + + A+  G+QIH+ IL +   
Sbjct: 462 AKGLNSEEAFELFNEIED---TGFVVNAFTFASLLSGASSIGAIGKGEQIHARILKSDFK 518

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +  + ++L+++Y +CGD  +A QV N M + +    +++I+GYA  G    A   F + 
Sbjct: 519 TNLHISNALISMYSRCGDIEAAFQVFNGMGDRNVISWTSMITGYAKHGFAVRALETFHKM 578

Query: 265 TDTSSVMW 272
            +T  VMW
Sbjct: 579 LET--VMW 584


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/531 (25%), Positives = 238/531 (44%), Gaps = 109/531 (20%)

Query: 1   MDTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           M  R+D      +L++C    S+  G+++H    K G  +S + + N LL  Y  CG   
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLG-FDSDVFVGNTLLLFYGNCGGLK 59

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM---------- 108
           D   +FDEM  R+  SWN++I  F   G   +++ LF  M  ++ F  NM          
Sbjct: 60  DVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVC 119

Query: 109 ------------------------------LISGFAKAGELKTARTLFNDMPRRNAIAWN 138
                                         L+  + K G +K +R +F+++  RN ++WN
Sbjct: 120 AGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWN 179

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
           ++I         ++A+ +F+ +    V   + ++   ++++    +L   ++GK+IH   
Sbjct: 180 AIITSLAYLERNQDALEMFRLMIDGGV---KPNSVTFSSMLPVLVELKLFDFGKEIHGFS 236

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
           L  GL                               E D F  +ALI  YA  G+   A 
Sbjct: 237 LRFGL-------------------------------ESDIFVANALIDMYAKSGRSLQAS 265

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
            VF++  + + V WN+M++ +  N  +  A+ L  +M+ +G + ++ T  +VL AC+ +G
Sbjct: 266 NVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIG 325

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
           FL  GK++H  A + G   D+ V++AL D Y+K                           
Sbjct: 326 FLRPGKEIHARAIRTGSSVDLFVSNALTDMYAK--------------------------- 358

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
               CG +  A+ +F+ +  +  +S+N +I+G SQ  +  E+L LF  M    +++D  S
Sbjct: 359 ----CGCLNLARRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVS 413

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
              VISACAN+++L+ G++V        L +   I+ +L+DFY KCG I +
Sbjct: 414 YMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDL 464



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 219/509 (43%), Gaps = 116/509 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+Q+H + +K G L+S + + N L+ +Y +CG   D+  +FDE+  RN  SWNA+I    
Sbjct: 128 GRQIHCYVVKTG-LDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLA 186

Query: 84  KLGHKEKSLQLFNVM------PQKNDFS-------------------------------- 105
            L   + +L++F +M      P    FS                                
Sbjct: 187 YLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIF 246

Query: 106 -WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LI  +AK+G    A  +FN +  +N ++WN+M+  + +N     AV        DL
Sbjct: 247 VANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAV--------DL 298

Query: 165 VERLQCDAFI-----LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           V ++Q D  I        V+ ACA +  L  GK+IH+  +  G   D  + ++L ++Y K
Sbjct: 299 VRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAK 358

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                          CG +N ARRVF + +    V +N +I GY
Sbjct: 359 -------------------------------CGCLNLARRVF-KISLRDEVSYNILIIGY 386

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
                 +E+L LF +M   G+  D  +   V+SAC++L  L+ GK+VHG A +  +   +
Sbjct: 387 SQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHL 446

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            +A+ALLD Y K G    A K+F ++   DT   N+MI  Y   G +             
Sbjct: 447 FIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTI----------- 495

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
                               A++LF  M +  +  D  S  +V+SAC++   +E G++ F
Sbjct: 496 --------------------AINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYF 535

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             + +  +   Q+    +VD   + G I+
Sbjct: 536 EHMQVQNIKPTQMHYACMVDLLGRAGLIE 564



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 16/232 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    ++  GK++H   ++K  L++ L IAN LL  Y++CG    A  +F ++P R
Sbjct: 417 VISACANLAALKQGKEVHGLAVRKH-LHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSR 475

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN+MI G+  LG    ++ LF  M +     +  S+  ++S  +  G ++  +  F
Sbjct: 476 DTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYF 535

Query: 127 NDMPRRN----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             M  +N     + +  M+    R G   EAV+L + L       ++ DA +   ++GAC
Sbjct: 536 EHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLP------IEPDANVWGALLGAC 589

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
                +E       H+            S L N+Y + G ++ ANQV  +MK
Sbjct: 590 RIHGYIELAHWAAEHLFKLKPQHSGYY-SVLSNMYAEAGKWDEANQVRKLMK 640



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 45/276 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +  GK++H   ++ G  +  L ++N L  MY +CG    A  +F ++  R
Sbjct: 317 VLPACARIGFLRPGKEIHARAIRTGS-SVDLFVSNALTDMYAKCGCLNLARRVF-KISLR 374

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           +  S+N +I G+ +  +  +SL+LF  M  K                             
Sbjct: 375 DEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVH 434

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     + F  N L+  + K G +  A  +F  +P R+  +WNSMI  Y   G   
Sbjct: 435 GLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELT 494

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ LF+ +  D VE    D+     V+ AC+    +E GK+   H+ V  +    +  +
Sbjct: 495 IAINLFEAMKEDGVEY---DSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYA 551

Query: 212 SLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALIS 246
            +V+L G+ G    A +++  +  EPD     AL+ 
Sbjct: 552 CMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLG 587


>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
 gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62260, mitochondrial; Flags: Precursor
 gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
 gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
          Length = 656

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 230/517 (44%), Gaps = 119/517 (23%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG---HKEKSLQLFNVMPQK 101
           N ++  Y++      A  LFD MP+R+  +WN MI G++  G     E++ +LF+ MP +
Sbjct: 75  NTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSR 134

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL- 160
           + FSWN +ISG+AK   +  A  LF  MP RNA++W++MI  + +NG    AV LF+++ 
Sbjct: 135 DSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMP 194

Query: 161 ---NSDLV---------ERLQCDAFILAT------------------VIG---------- 180
              +S L          ERL   A++L                    ++G          
Sbjct: 195 VKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAA 254

Query: 181 -----ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                   DL   ++G +       N + ++S     ++  Y K GD  SA  + + MK+
Sbjct: 255 RCLFDQIPDLCGDDHGGEFRERFCKNVVSWNS-----MIKAYLKVGDVVSARLLFDQMKD 309

Query: 236 PDDFCLSALISGYANCGKMNDA-------------------------------RRVFDRT 264
            D    + +I GY +  +M DA                               R  F++T
Sbjct: 310 RDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKT 369

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            +  +V WNS+I+ Y  N +  EA+ LF +M   G   D  TL S+LSA + L  L  G 
Sbjct: 370 PEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGM 429

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+H    K  VI DV V +AL                               IT+YS CG
Sbjct: 430 QMHQIVVKT-VIPDVPVHNAL-------------------------------ITMYSRCG 457

Query: 385 RIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
            I +++ IF  M   + +I+WN+MI G + +G+  EAL+LF +M    +     +  SV+
Sbjct: 458 EIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVL 517

Query: 444 SACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVD 479
           +ACA+   + E   Q  + +++  ++      +SLV+
Sbjct: 518 NACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVN 554



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 170/354 (48%), Gaps = 66/354 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++ Y++ G+   A LLFD+M  R+  SWN MI+G++ +   E +  LF+ MP ++  
Sbjct: 285 NSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAH 344

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWNM++SG+A  G ++ AR  F   P ++ ++WNS+I  Y +N   +EAV LF  +N   
Sbjct: 345 SWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMN--- 401

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +E  + D   L +++ A   L  L  G Q+H  I+V  +  D  + ++L+ +Y +CG+  
Sbjct: 402 IEGEKPDPHTLTSLLSASTGLVNLRLGMQMH-QIVVKTVIPDVPVHNALITMYSRCGEIM 460

Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            + ++ + MK + +    +A+I GYA  G                               
Sbjct: 461 ESRRIFDEMKLKREVITWNAMIGGYAFHGNA----------------------------- 491

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
             +EAL LF  M+ NG+     T  SVL+AC+  G ++  K                   
Sbjct: 492 --SEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQF---------------V 534

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           +++  Y          K+  +++ Y     ++++ V S  G+ E+A +I  +MP
Sbjct: 535 SMMSVY----------KIEPQMEHY-----SSLVNVTSGQGQFEEAMYIITSMP 573



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 28/240 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +     ++ +G Q+H   +K  I +  +P+ N L+ MY RCG   ++  +FDEM
Sbjct: 412 LTSLLSASTGLVNLRLGMQMHQIVVKTVIPD--VPVHNALITMYSRCGEIMESRRIFDEM 469

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM----LISGFAKAGELKTA 122
             +R   +WNAMI G+   G+  ++L LF  M     +  ++    +++  A AG +  A
Sbjct: 470 KLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEA 529

Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +  F  M     I      ++S+++     G   EA+ +   +        + D  +   
Sbjct: 530 KAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMP------FEPDKTVWGA 583

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS----LVNLYGKCGDFNSANQV-LNM 232
           ++ AC       Y     +H+    +       S+    L N+Y   G ++ A+QV +NM
Sbjct: 584 LLDACRI-----YNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNM 638


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 208/450 (46%), Gaps = 94/450 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H LK G  +  L +   L+ MY + G   DA  +FD    R
Sbjct: 81  LLKSCAKSKTFKEGQQIHGHVLKLG-FDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHR 139

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A+I G+   G+ E + ++F+ +P K+  SWN +ISG+A+ G  K A  LF +M 
Sbjct: 140 DVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM 199

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           + N                                  ++ D   +ATV+ ACA   ++E 
Sbjct: 200 KTN----------------------------------VKPDESTMATVVSACAQSGSIEL 225

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G   +  + ++L++LY KCG+  +A ++L  +   D             
Sbjct: 226 GRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKD------------- 272

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                              + WN++I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 273 ------------------VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 314

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+ LG ++ G+ +H +  K   +  V+V +A                         +
Sbjct: 315 LPACAHLGAIDIGRWIHVYIDK--KLKGVVVTNA-------------------------S 347

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            L  ++I +Y+ CG I+ A  +  +   N+SL +WN+MI G + +G    A D+F  M K
Sbjct: 348 SLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRK 407

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVF 459
             +  D  +   ++SAC++   L+LG  +F
Sbjct: 408 NGIEPDDITFVGLLSACSHSGMLDLGRNIF 437



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 182/373 (48%), Gaps = 38/373 (10%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +P  N + WN M   +  +     A++L+  + S     L  + F    +
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMIS---LGLLPNFFTFPFL 81

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA     + G+QIH H+L  G D D  + +SL+++Y + G    A +V +     D 
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G +  A+++FD       V WN+MISGY       +AL LF +M + 
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+A+V+SAC+  G +E G+QVH      G   ++ + +AL+D           
Sbjct: 202 NVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALID----------- 250

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                               +YS CG +E A  +   + NK +ISWN++I G +      
Sbjct: 251 --------------------LYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYK 290

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA----RVTIIGLDSDQIIS 474
           EAL LF  M +     +  ++ S++ ACA++ ++++G  +      ++  + + +   + 
Sbjct: 291 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLR 350

Query: 475 TSLVDFYCKCGFI 487
           TSL+D Y KCG I
Sbjct: 351 TSLIDMYAKCGDI 363



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 135/232 (58%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A  VF+   + + ++WN M  G+  +++   AL L+  M   G+L +  T   +L +C+ 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
               + G+Q+HGH  K+G   D+ V ++L+  Y++ G   DA K+F      D +    +
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           IT Y+S G IE A+ +F  +P K ++SWN+MI G ++ G+  +AL+LF  M K +++ D+
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            ++A+V+SACA   S+ELG QV + +   G  S+  I  +L+D Y KCG ++
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVE 259


>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 434

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 204/396 (51%), Gaps = 36/396 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           Q+ +++  K+     +L+       ++  AR LF+ +P+   I +NS+I  Y +    ++
Sbjct: 20  QIHSLIIIKHPSLATVLVRKLLNLSDIDYARQLFDQVPQPGQILYNSLISTYSKLSLHKD 79

Query: 153 AVRLFKELN-SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           A++ F  ++ SD   RL C  F    VI AC+ L A++ GKQ+HS I++ G+D +  + +
Sbjct: 80  ALKTFFSMHHSD--TRLSC--FTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYVQT 135

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL++ Y K G+  SA ++ + +   D    + LI+GY+  G +  ARR+FD  T+ + V 
Sbjct: 136 SLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTVVS 195

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MIS Y  N +  E L  F +M+   +  +  TL ++LS C+ LG LE G ++  +  
Sbjct: 196 WNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYIE 255

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
              +  ++IV++A+L+ Y K G   DA K F  +   D +  + MI  Y           
Sbjct: 256 DNNLCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGY----------- 304

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                               +QNG   EAL+LF  M +  ++ +  +L SV+SAC  + S
Sbjct: 305 --------------------AQNGRSNEALELFECMRREKVKPNDVTLVSVLSACVQLGS 344

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +E+G  + + V    L S+  ++++LV  Y KCG I
Sbjct: 345 VEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNI 380



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 166/326 (50%), Gaps = 34/326 (10%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N +   ++++ + K+G    + ++F+ +  K+  S+N LI+G++KAG++  AR LF+ M 
Sbjct: 130 NVYVQTSLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMT 189

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R  ++WN+MI CY  NG   E ++ F+ + +   E +  +   L T++  CA L  LE 
Sbjct: 190 ERTVVSWNAMISCYAHNGDLNEGLKTFERMQA---EDISPNEITLVTLLSICAKLGDLEM 246

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G +I  +I  N L  + ++ ++++ +Y KC                              
Sbjct: 247 GLRIKKYIEDNNLCVNMIVSTAILEMYVKC------------------------------ 276

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G ++DAR+ FDR      V W++MI+GY  N    EAL LF  MRR  V  +  TL SV
Sbjct: 277 -GAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSV 335

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSAC  LG +E G  +  +     +  +V VASAL+  YSK G  S A ++F +    D 
Sbjct: 336 LSACVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKAREVFGKTPQKDI 395

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTM 396
           +  N+MI   +  G  +DA  ++R M
Sbjct: 396 VTWNSMIVGLAVNGFAKDAIALYRNM 421



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 144/278 (51%), Gaps = 4/278 (1%)

Query: 212 SLVNLYGKCGDFNSANQV--LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           +L+ L       N   Q+  L ++K P     + L+    N   ++ AR++FD+      
Sbjct: 4   TLITLLHSPLQINQLKQIHSLIIIKHPS--LATVLVRKLLNLSDIDYARQLFDQVPQPGQ 61

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           +++NS+IS Y   +   +AL  F  M  +       T   V+ ACSSL  ++ GKQVH  
Sbjct: 62  ILYNSLISTYSKLSLHKDALKTFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSL 121

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
               G+  +V V ++L+D Y+K G    A K+F  + V D I  N +IT YS  G +  A
Sbjct: 122 IVICGIDCNVYVQTSLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAGDVIAA 181

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F +M  ++++SWN+MI   + NG   E L  F  M   D+  ++ +L +++S CA +
Sbjct: 182 RRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAKL 241

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             LE+G ++   +    L  + I+ST++++ Y KCG +
Sbjct: 242 GDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAV 279



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 147/367 (40%), Gaps = 105/367 (28%)

Query: 2   DTRIDYLA--RLLQSCNTHHSIHVGKQLHL-------------------HFLKKGILNST 40
           DTR+       ++++C++  +I VGKQ+H                     + K G L S 
Sbjct: 91  DTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYVQTSLMDFYAKIGELGSA 150

Query: 41  L----------PIA-NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89
                      PI+ N L+  Y + G+   A  LFD M  R   SWNAMI  +   G   
Sbjct: 151 RKIFDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTVVSWNAMISCYAHNGDLN 210

Query: 90  KSLQLFNVMP----------------------------------QKNDFSWNMLISG--- 112
           + L+ F  M                                   + N+   NM++S    
Sbjct: 211 EGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYIEDNNLCVNMIVSTAIL 270

Query: 113 --FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
             + K G +  AR  F+ M +R+ +AW++MI  Y +NG + EA+ LF+ +     E+++ 
Sbjct: 271 EMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRR---EKVKP 327

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +   L +V+ AC  L ++E G  I S++    L  +  + S+LV +Y KCG+ + A    
Sbjct: 328 NDVTLVSVLSACVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKA---- 383

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                                      R VF +T     V WNSMI G   N    +A+ 
Sbjct: 384 ---------------------------REVFGKTPQKDIVTWNSMIVGLAVNGFAKDAIA 416

Query: 291 LFHKMRR 297
           L+  M+ 
Sbjct: 417 LYRNMKE 423



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    S+ +G  +   +++   L S + +A+ L+ MY +CGN + A  +F + 
Sbjct: 332 LVSVLSACVQLGSVEMGNYIG-SYVESQDLASNVYVASALVGMYSKCGNISKAREVFGKT 390

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
           P+++  +WN+MI G    G  + ++ L+  M + +
Sbjct: 391 PQKDIVTWNSMIVGLAVNGFAKDAIALYRNMKEAD 425


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 201/449 (44%), Gaps = 65/449 (14%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           + T+   N ++  Y     P +A  LFD+MP RN  SWN ++ G++K G   ++ ++F+ 
Sbjct: 44  SKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDK 103

Query: 98  MPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
           MP++N  SW  ++ G+ + G +  A  LF  MP +N ++W  M+   + +G   EA RLF
Sbjct: 104 MPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLF 163

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI----------LVNGL---- 203
                D++     D      +IG       L   ++I   +          +++G     
Sbjct: 164 -----DMIP--VKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNN 216

Query: 204 -------------DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
                        D + V  ++++  Y + G  N A ++   M        + +I G+  
Sbjct: 217 KVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGL 276

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G++  AR VFD+  +     W+++I  Y     + EAL LF  M+R GV  +  ++ S+
Sbjct: 277 NGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISI 336

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LS C SL  L+HG+QVH    +     D+ V+S L                         
Sbjct: 337 LSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVL------------------------- 371

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                 IT+Y  CG +   K +F    +K ++ WNS+I G +Q+G   +AL++F  M   
Sbjct: 372 ------ITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSS 425

Query: 431 DLRMDKFSLASVISACANISSLELGEQVF 459
               D+ +   V+SAC     ++ G ++F
Sbjct: 426 GAAPDEITFIGVLSACGYTGKVKEGLEIF 454



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 200/452 (44%), Gaps = 81/452 (17%)

Query: 34  KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           +   +S+  I    +  + R G    A  +FD++  +   SWNA++ G+       ++ +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           LF+ MP++N  SWN L+SG+ K G +  AR +F+ MP RN ++W SM+      G+ +E 
Sbjct: 69  LFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVR-----GYVQEG 123

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           +    EL   L  R+     +  TV                    ++ GL  D       
Sbjct: 124 LIDEAEL---LFWRMPEKNVVSWTV--------------------MLGGLIED------- 153

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
                  G  + A ++ +M+   D    + +I G  + G++++AR +FD     + V W 
Sbjct: 154 -------GRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWT 206

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           SMISGY  NN+   A  LF       V+ D +                            
Sbjct: 207 SMISGYAMNNKVDVARKLFE------VMPDKNE--------------------------- 233

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
                 +  +A+L  Y++ G  ++A +LF  + V      N MI  +   G +  A+ +F
Sbjct: 234 ------VTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVF 287

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             M  K   +W+++I    + G  +EAL LF  M +  +R +  S+ S++S C +++SL+
Sbjct: 288 DQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLD 347

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            G QV +++     D D  +S+ L+  Y KCG
Sbjct: 348 HGRQVHSQLVRSHFDLDIYVSSVLITMYIKCG 379


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 142/517 (27%), Positives = 230/517 (44%), Gaps = 104/517 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   +   G+Q+H   +K G+ N    +   LL MY +CG   +A  +F  +  + 
Sbjct: 279 LGACSQSENSGFGRQIHCDVVKMGLHNDPY-VCTSLLSMYSKCGMVGEAETVFSCVVDKR 337

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG--------------- 112
              WNAM+  + +  +   +L LF  M QK    + F+ + +IS                
Sbjct: 338 LEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHA 397

Query: 113 --------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                               ++K G    A  +F  M  ++ +AW S+I    +NG  +E
Sbjct: 398 ELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKE 457

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+++F ++  D  + L+ D+ I+ +V  ACA L AL +G Q+H  ++  GL  +  +GSS
Sbjct: 458 ALKVFGDMKDD-DDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSS 516

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L++LY K                               CG    A +VF   +  + V W
Sbjct: 517 LIDLYSK-------------------------------CGLPEMALKVFTSMSTENMVAW 545

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           NSMIS Y  NN    ++ LF+ M   G+  D+ ++ SVL A SS   L  GK +HG+  +
Sbjct: 546 NSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 605

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+                   PSD            T L N +I +Y  CG  + A++I
Sbjct: 606 LGI-------------------PSD------------THLKNALIDMYVKCGFSKYAENI 634

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F+ M +KSLI+WN MI G   +G  I AL LF  M K     D  +  S+ISAC +   +
Sbjct: 635 FKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFV 694

Query: 453 ELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
           E G+ +F  +    G++ +     ++VD   + G ++
Sbjct: 695 EEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLE 731



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 217/510 (42%), Gaps = 108/510 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
           GKQ+H  F+ +  L++   +   L+ MY + G   DA  +F E+  + N   WN MI GF
Sbjct: 189 GKQIH-GFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGF 247

Query: 83  MKLGHKEKSLQLFNV--------------------------------------MPQKND- 103
              G  E SL L+ +                                      M   ND 
Sbjct: 248 GGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDP 307

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           +    L+S ++K G +  A T+F+ +  +    WN+M+  Y  N +   A+ LF  +   
Sbjct: 308 YVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQ- 366

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             + +  D+F L+ VI  C+ L    YGK +H+ +    +   S + S            
Sbjct: 367 --KSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIES------------ 412

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                              AL++ Y+ CG   DA  VF    +   V W S+ISG   N 
Sbjct: 413 -------------------ALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNG 453

Query: 284 EDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           +  EAL +F  M+ +   +  D+  + SV +AC+ L  L  G QVHG   K G++ +V V
Sbjct: 454 KFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFV 513

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            S+L+D YSK                               CG  E A  +F +M  +++
Sbjct: 514 GSSLIDLYSK-------------------------------CGLPEMALKVFTSMSTENM 542

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ++WNSMI   S+N  P  ++DLF  M    +  D  S+ SV+ A ++ +SL  G+ +   
Sbjct: 543 VAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGY 602

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              +G+ SD  +  +L+D Y KCGF K  E
Sbjct: 603 TLRLGIPSDTHLKNALIDMYVKCGFSKYAE 632



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 226/538 (42%), Gaps = 117/538 (21%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T +     LL++C+   ++  GK +H   +  G       IA  L+ MY++CG    A+ 
Sbjct: 58  TSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPF-IATSLVNMYVKCGFLDYAVQ 116

Query: 63  LFDEMPR-------RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLIS 111
           +FD   +       R+   WN+MI+G+ K    ++ +  F  M     + + FS ++++S
Sbjct: 117 VFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVS 176

Query: 112 GFAKAGE-----------------------LKTA---------------RTLFNDMPRRN 133
              K G                        LKTA               R       + N
Sbjct: 177 VMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSN 236

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            + WN MI  +  +G    ++ L+    ++ V +L   +F  A  +GAC+      +G+Q
Sbjct: 237 VVLWNVMIVGFGGSGICESSLDLYMLAKNNSV-KLVSTSFTGA--LGACSQSENSGFGRQ 293

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           IH  ++  GL                                 D +  ++L+S Y+ CG 
Sbjct: 294 IHCDVVKMGL-------------------------------HNDPYVCTSLLSMYSKCGM 322

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           + +A  VF    D    +WN+M++ Y  N+    AL LF  MR+  VL D+ TL++V+S 
Sbjct: 323 VGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISC 382

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           CS LG   +GK VH    K  +     + SALL  YSK G   DA  +F           
Sbjct: 383 CSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVF----------- 431

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-- 431
                               ++M  K +++W S+I GL +NG   EAL +F +M   D  
Sbjct: 432 --------------------KSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDS 471

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           L+ D   + SV +ACA + +L  G QV   +   GL  +  + +SL+D Y KCG  +M
Sbjct: 472 LKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 154/356 (43%), Gaps = 58/356 (16%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           NS I   ++ G   +A+ L+ +   D         F   +++ AC+ L  L YGK IH  
Sbjct: 28  NSGIRALIQKGEYLQALHLYSK--HDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           ++V G  +D  + +SLVN+Y KCG  + A QV +               G++       A
Sbjct: 86  VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFD---------------GWSQSQSGVSA 130

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA-CSS 316
           R V          +WNSMI GY       E +  F +M   GV  DA +L+ V+S  C  
Sbjct: 131 RDV---------TVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKE 181

Query: 317 LGF-LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
             F  E GKQ+HG   +  +  D  + +AL+D Y K G+  DA ++F E           
Sbjct: 182 GNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVE----------- 230

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                     IED  ++         + WN MIVG   +G    +LDL+       +++ 
Sbjct: 231 ----------IEDKSNV---------VLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLV 271

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             S    + AC+   +   G Q+   V  +GL +D  + TSL+  Y KCG +   E
Sbjct: 272 STSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAE 327



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 135/311 (43%), Gaps = 42/311 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L + ++  S+  GK LH + L+ GI + T  + N L+ MY++CG    A  +F +M
Sbjct: 580 ITSVLVAISSTASLLKGKSLHGYTLRLGIPSDT-HLKNALIDMYVKCGFSKYAENIFKKM 638

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             ++  +WN MI G+   G    +L LF+ M +     +D ++  LIS    +G ++  +
Sbjct: 639 QHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGK 698

Query: 124 TLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F  M +   I  N     +M+    R G   EA    K +       ++ D+ I   +
Sbjct: 699 NIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAM------PIEADSSIWLCL 752

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
           + A      +E G      +L      +   GS+   L+NLY + G  N A ++L +MKE
Sbjct: 753 LSASRTHHNVELGILSAEKLL----RMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKE 808

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                    +     C  +     V DRT        N   SG  S+    E   + +++
Sbjct: 809 KG-------LHKQPGCSWI----EVSDRT--------NVFFSGGSSSPMKAEIFNVLNRL 849

Query: 296 RRNGVLEDAST 306
           + N V ED +T
Sbjct: 850 KSNMVDEDKAT 860



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQV 458
           S  S NS I  L Q G  ++AL L+   +         F+  S++ AC+ +++L  G+ +
Sbjct: 23  SPASINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFI 487
              V ++G   D  I+TSLV+ Y KCGF+
Sbjct: 83  HGSVVVLGWRYDPFIATSLVNMYVKCGFL 111


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 142/518 (27%), Positives = 228/518 (44%), Gaps = 106/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +   +  GKQLH + LK G ++        LL +Y++CG+   A  +F+  
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAG-MSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
            R N   WN M+  + ++    KS ++F  M                             
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGE 366

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN F  +M +SG     ++K G L  AR +   + +R+ ++W SMI  YV++ 
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+  FKE+    V     D   LA+   ACA + A+  G QIH+ + V+G   D  
Sbjct: 427 FCEEALATFKEMQDCGVWP---DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS 483

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LVNLY                               A CG+  +A  +F       
Sbjct: 484 IWNTLVNLY-------------------------------ARCGRSEEAFSLFREIEHKD 512

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + WN +ISG+  +    +AL++F KM + G   +  T  S +SA ++L  ++ GKQVHG
Sbjct: 513 EITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHG 572

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   +  VA+AL+  Y K G   DA  +FSE+ + + +  NT+IT   SC     
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIIT---SC----- 624

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                  SQ+G  +EALDLF  M +  L+ +  +   V++AC++
Sbjct: 625 -----------------------SQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSH 661

Query: 449 ISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG 485
           +  +E G   F  ++ + GL+        +VD   + G
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAG 699



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/555 (23%), Positives = 228/555 (41%), Gaps = 143/555 (25%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------ 96
           I N L+ +Y + G    A  +F E+  R+  SW AM+ G+ + G  +++ +L++      
Sbjct: 80  IGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTA 139

Query: 97  VMPQK---------------------------------NDFSWNMLISGFAKAGELKTAR 123
           V+P                                     F  N LI+ +   G  K A 
Sbjct: 140 VIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAE 199

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F DM   + + +N++I  + + G    A+++F E+    +  L+ D   +A+++ ACA
Sbjct: 200 RVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ---LSGLRPDCVTVASLLAACA 256

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL--------------------------- 216
            +  L+ GKQ+HS++L  G+ FD +   SL++L                           
Sbjct: 257 SVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNL 316

Query: 217 ----YGKCGDFNSANQVLNMMK-------------------------------------- 234
               YG+  D   + ++   M+                                      
Sbjct: 317 MLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNG 376

Query: 235 -EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            E D +    LI  Y+  G ++ AR++ +       V W SMI+GY+ ++   EAL  F 
Sbjct: 377 FESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFK 436

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M+  GV  D   LAS  SAC+ +  +  G Q+H      G   D+ +            
Sbjct: 437 EMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI------------ 484

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                               NT++ +Y+ CGR E+A  +FR + +K  I+WN +I G  Q
Sbjct: 485 -------------------WNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQ 525

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           +    +AL +F  M +   + + F+  S ISA AN++ ++ G+QV  R    G  S+  +
Sbjct: 526 SRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEV 585

Query: 474 STSLVDFYCKCGFIK 488
           + +L+  Y KCG I+
Sbjct: 586 ANALISLYGKCGSIE 600



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 62/296 (20%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           +IH+  +V GL  D ++G+ L++LY K G    A QV   +   D     A++SGYA  G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
              +A R                               L+ +M    V+     L+SVLS
Sbjct: 124 LGKEAFR-------------------------------LYSQMHWTAVIPTPYVLSSVLS 152

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+       G+ +H    K     +  V +AL+  Y   G    A ++F ++   D + 
Sbjct: 153 ACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVT 212

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            NT+I+ ++ CG  E                                AL +F  M    L
Sbjct: 213 FNTLISGHAQCGHGEC-------------------------------ALQIFDEMQLSGL 241

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           R D  ++AS+++ACA++  L+ G+Q+ + +   G+  D I   SL+D Y KCG I+
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 128/311 (41%), Gaps = 74/311 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA    +C    ++  G Q+H      G   + + I N L+ +Y RCG   +A  LF E+
Sbjct: 450 LASAASACAGIKAMRQGLQIHARVYVSG-YAADISIWNTLVNLYARCGRSEEAFSLFREI 508

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             ++  +WN +I GF +    +++L +F  M Q     N F++                 
Sbjct: 509 EHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGK 568

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LIS + K G ++ A+ +F++M  RN ++WN++I    ++G
Sbjct: 569 QVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF ++     E L+ +      V+ AC+ +  +E            GL +   
Sbjct: 629 RGLEALDLFDQMKQ---EGLKPNDVTFIGVLAACSHVGLVE-----------EGLSY--- 671

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                         F S + V  +   PD +     I G A  G+++ ARR  D    T+
Sbjct: 672 --------------FKSMSNVYGLNPIPDHYACVVDILGRA--GQLDRARRFVDEMPITA 715

Query: 269 SVM-WNSMISG 278
           + M W +++S 
Sbjct: 716 NAMIWRTLLSA 726



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 21/226 (9%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GKQ+H   +K G  + T  +AN L+ +Y +CG+  DA ++F EM  RN  SWN +I 
Sbjct: 564 IKQGKQVHGRAVKTGHTSET-EVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIIT 622

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
              + G   ++L LF+ M Q+    ND ++  +++  +  G ++   + F  M   N   
Sbjct: 623 SCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS--NVYG 680

Query: 137 WNSMIHCYV-------RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
            N +   Y        R G    A R   E+       +  +A I  T++ AC     +E
Sbjct: 681 LNPIPDHYACVVDILGRAGQLDRARRFVDEMP------ITANAMIWRTLLSACKVHKNIE 734

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            G+    H+L      DS     L N Y   G + + +QV  MMK+
Sbjct: 735 IGELAAKHLL-ELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKD 779



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 62/123 (50%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D ++ N +I +Y+  G +  A+ +F+ + ++  +SW +M+ G +Q+G   EA  L+  M+
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMH 136

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +    + L+SV+SAC        G  + A+V      S+  +  +L+  Y   G  K
Sbjct: 137 WTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFK 196

Query: 489 MDE 491
           + E
Sbjct: 197 LAE 199


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 202/397 (50%), Gaps = 22/397 (5%)

Query: 109 LISGFAKAGELKTARTLFNDMP---RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
           L+S +++ G +  AR +F   P     N + WNS+I   V +G+  EA++L+ ++ +  V
Sbjct: 76  LVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGV 135

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
                D F    ++ A ++L A    K +H H++  G      +G+ L+ +Y K    + 
Sbjct: 136 ---LGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDD 192

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSMISGYIS 281
           A +V + M+       + ++SGYA    +N A R+F +      + + V W S++S +  
Sbjct: 193 ARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHAR 252

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
                E ++LF KMR  GV   A  LA VLS C+ L  L  G+ +HG+  K G  D +  
Sbjct: 253 CGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFA 312

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM----- 396
            +AL+  Y K G   DA KLF E+KV + +  N +I+ ++  G  + A  +   +     
Sbjct: 313 KNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEA 372

Query: 397 -----PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                PN  +I+W+++I G +  G   E+L++F  M   +++ +  ++ASV+S CA +++
Sbjct: 373 YPEMKPN--VITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAA 430

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           L LG ++   V    +D + ++   L++ Y KCG  K
Sbjct: 431 LNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFK 467



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 204/435 (46%), Gaps = 51/435 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++ +   + ++ K LH H ++ G  N  L + N L+ MY +     DA  +FD+    
Sbjct: 145 LLRASSNLGAFNMCKNLHCHVVQFGFQNH-LHVGNELIGMYAKLERMDDARKVFDK---- 199

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                      M  K+  SWN ++SG+A   ++  A  +F+ M 
Sbjct: 200 ---------------------------MRIKSVVSWNTMVSGYAYNYDVNGASRMFHQME 232

Query: 131 ----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
                 N + W S++  + R G   E + LF ++    ++ +   A +LA V+  CADLA
Sbjct: 233 LEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMR---MKGVGPTAEMLAVVLSVCADLA 289

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            L  G+ IH +++  G +      ++L+ LYGK G    A ++ + MK  +    +ALIS
Sbjct: 290 TLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALIS 349

Query: 247 GYANCGKMNDARRVFDRTTDTSS--------VMWNSMISGYISNNEDTEALLLFHKMRRN 298
            +A  G  + A  +  +     +        + W+++I G+ S     E+L +F KM+  
Sbjct: 350 SFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLA 409

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  ++ T+ASVLS C+ L  L  G+++HGH  +  + D+V+V + L++ Y+K G     
Sbjct: 410 NVKANSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPG 469

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDA----KHIFRTMPNKSLISWNSMIVGLSQN 414
             +F +L+  D+I  N+MI  Y + G  +DA     H+ ++      +++ + +   S  
Sbjct: 470 FMVFEKLENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHA 529

Query: 415 GSPIEALDLFCNMNK 429
           G   E   LF  M +
Sbjct: 530 GLVAEGHWLFSQMRQ 544



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 164/368 (44%), Gaps = 78/368 (21%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           + LA +L  C    +++ G+ +H + +K G  N  L   N L+ +Y + G   DA  LF 
Sbjct: 276 EMLAVVLSVCADLATLNSGQMIHGYMVKGG-FNDYLFAKNALITLYGKGGGVGDAEKLFH 334

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
           EM  +N  SWNA+I  F + G  +K+L+L + + +   +             E+K     
Sbjct: 335 EMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYP------------EMKP---- 378

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
                  N I W+++I  +   G   E++ +F+++    +  ++ ++  +A+V+  CA L
Sbjct: 379 -------NVITWSAIICGFASKGLGEESLEVFRKMQ---LANVKANSVTIASVLSICAML 428

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
           AAL  G+++H H++   +D + ++G+ L+N+Y KCG F     V   ++  D    +++I
Sbjct: 429 AALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMI 488

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           +GY   G   D                               AL  F+ M ++G   D  
Sbjct: 489 AGYGTHGLGKD-------------------------------ALATFNHMIKSGYRPDGV 517

Query: 306 TLASVLSACSSLGFLEHG--------------KQVHGHACKVGVIDDVIVASALLDTYSK 351
           T  + LSACS  G +  G               ++  +AC V    D++  + L++  S 
Sbjct: 518 TFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMV----DLLGRAGLVEEASN 573

Query: 352 --RGMPSD 357
             +GMP +
Sbjct: 574 IIKGMPME 581



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 145/305 (47%), Gaps = 15/305 (4%)

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC---LSA-LISGYA 249
           I+ H   + + +D  L     +L  +C     + QV +       +C   +SA L+S Y+
Sbjct: 22  INFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSATVVTGAYCSAFVSARLVSIYS 81

Query: 250 NCGKMNDARRVFDRTT---DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
             G ++DAR+VF        ++ ++WNS+I   + +    EAL L+ KMR  GVL D  T
Sbjct: 82  RYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFT 141

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
              +L A S+LG     K +H H  + G  + + V + L+  Y+K     DA K+F +++
Sbjct: 142 FPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMR 201

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEA 420
           +   +  NTM++ Y+    +  A  +F  M      PN   ++W S++   ++ G   E 
Sbjct: 202 IKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNP--VTWTSLLSSHARCGHLEET 259

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           + LFC M    +      LA V+S CA++++L  G+ +   +   G +       +L+  
Sbjct: 260 MVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITL 319

Query: 481 YCKCG 485
           Y K G
Sbjct: 320 YGKGG 324


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 196/449 (43%), Gaps = 105/449 (23%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+S F + G+L  A  +F  M  R+  +WN ++  Y + G+  EA+ L+  +   L  
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM---LWV 189

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++ D +    V+  C  L  L  G+++H H++  G                    F S 
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYG--------------------FESD 229

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V+N           ALI+ Y  CG +  AR VFDR      + WN+MISGY  N+   
Sbjct: 230 VDVVN-----------ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCL 278

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI---------- 336
           E L LF  MR   V  D  T+ SV+SAC +LG    G++VHG+  K G +          
Sbjct: 279 EGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLI 338

Query: 337 ---------------------DDVIVASALLDTYSKRGMPSDACKLFS----ELKVYDTI 371
                                 D++  +A++  Y K G+P  A + ++    E  V D I
Sbjct: 339 QMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEI 398

Query: 372 LL-----------------------------------NTMITVYSSCGRIEDAKHIFRTM 396
            +                                   N++I +YS C  I+ A  +F  +
Sbjct: 399 TIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI 458

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           PNK++ISW S+I+GL  N    EAL  F  M  L L+ +  +L SV+SACA I +L  G+
Sbjct: 459 PNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGK 517

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ A     GL  D  +  +L+D Y +CG
Sbjct: 518 EIHAHALRTGLGFDGFLPNALLDMYVRCG 546



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 214/488 (43%), Gaps = 107/488 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++HLH ++ G   S + + N L+ MY++CG+   A L+FD MPRR
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYG-FESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
           +  SWNAMI G+ +     + L+LF +M +                              
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 101 ----KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
               K  F       N LI   +  G    A  +F+ M  ++ ++W +MI  Y +NG   
Sbjct: 320 GYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPE 379

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +AV  +  +     E +  D   +A+V+ ACA L  L+ G  +H      GL    ++ +
Sbjct: 380 KAVETYTIMEH---EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVAN 436

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC                              C  ++ A  VF R  + + + 
Sbjct: 437 SLIDMYSKC-----------------------------RC--IDKALEVFHRIPNKNVIS 465

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+I G   N    EAL  F +M  + +  ++ TL SVLSAC+ +G L  GK++H HA 
Sbjct: 466 WTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHAL 524

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G+  D  + +ALLD Y +                               CGR+E A +
Sbjct: 525 RTGLGFDGFLPNALLDMYVR-------------------------------CGRMEPAWN 553

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F +   K + SWN ++ G +Q G    A++LF  M + D+  D+ +  S++ AC+    
Sbjct: 554 QFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGM 612

Query: 452 LELGEQVF 459
           +  G + F
Sbjct: 613 VTDGLEYF 620



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 175/409 (42%), Gaps = 96/409 (23%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  F++ G   ++  +F  M +++ FSWN+L+ G+AKAG    A  L++ M      
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM------ 186

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
                                       L   ++ D +    V+  C  L  L  G+++H
Sbjct: 187 ----------------------------LWVGIRPDVYTFPCVLRTCGGLPDLARGREVH 218

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            H++  G + D  + ++L+ +Y KCGD  SA  V + M   D    +A+           
Sbjct: 219 LHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM----------- 267

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                               ISGY  N+   E L LF  MR   V  D  T+ SV+SAC 
Sbjct: 268 --------------------ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACE 307

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +LG    G++VHG+  K G + +V V ++L+  +S  G   +A  +FS+++  D +    
Sbjct: 308 ALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTA 367

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           MI+                               G  +NG P +A++ +  M    +  D
Sbjct: 368 MIS-------------------------------GYEKNGLPEKAVETYTIMEHEGVVPD 396

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           + ++ASV+SACA +  L+ G  +       GL S  I++ SL+D Y KC
Sbjct: 397 EITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKC 445



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 22/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +L +C    ++  GK++H H L+ G+  +  LP  N LL MY+RCG    A   F+ 
Sbjct: 500 LVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCGRMEPAWNQFNS 557

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTA 122
              ++  SWN ++ G+ + G    +++LF+ M +     ++ ++  L+   +++G +   
Sbjct: 558 C-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDG 616

Query: 123 RTLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
              F  M  +  IA N     S++    R G   +A    K++  D       D  I   
Sbjct: 617 LEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPID------PDPAIWGA 670

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           ++ AC     +E G+    HI    +D  SV    L+ NLY   G ++   +V  +M+E
Sbjct: 671 LLNACRIYQNVELGELAAQHIF--EMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRE 727



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           L N +++++   G + +A ++F  M  + L SWN ++ G ++ G   EAL+L+  M  + 
Sbjct: 131 LGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +R D ++   V+  C  +  L  G +V   V   G +SD  +  +L+  Y KCG I
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDI 246


>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
 gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
          Length = 963

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/563 (26%), Positives = 237/563 (42%), Gaps = 116/563 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLH-FLKKGILNSTLPIANRLLQMYMRC--GNPTDALLLFDEM 67
           LL++C       +G    +H  L K    S   + N L+ MY  C  G P  A  +FD  
Sbjct: 170 LLRACQDGGPDRLGFATQVHGLLSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGT 229

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------NVMPQKNDFS------------ 105
           P R+  +WNA++  + K G    +  LF           + P ++ F             
Sbjct: 230 PIRDLITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSSGS 289

Query: 106 ----------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  + L+S FA+ G +  A+ +F  +  +NA+  N +I  
Sbjct: 290 SAVLDQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVG 349

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
            V+   + EAV++F    + +V        +L+ +         L  GK+ H H+L  GL
Sbjct: 350 LVKQHCSEEAVKIFVGTRNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGL 409

Query: 204 -DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG--------------- 247
            D    + + LVN+Y KCG  +SA+++  +M+  D    + +IS                
Sbjct: 410 TDLKIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISALDQNGLKLLSAGQQV 469

Query: 248 ----------------------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                 Y  CG M+D  +VF+   D   V WNSM+    S+   
Sbjct: 470 HCDAVKWGLDLDTSVSNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAP 529

Query: 286 -TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
            +E + +F+ M R G++ +  T  ++L+A S L  LE GKQ H    K GV+DD +V +A
Sbjct: 530 ISETVEVFNNMMRGGLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNA 589

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  Y+K G  +    LFS +                  GR             +  +SW
Sbjct: 590 LISCYAKSGDMNSCEHLFSNMS-----------------GR-------------RDAVSW 619

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           NSMI G   NG   EA+D    M      MD  + + +++ACA++++LE G ++ A    
Sbjct: 620 NSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNACASVAALERGMEMHAFGIR 679

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
             L+SD ++ ++LVD Y KCG +
Sbjct: 680 SHLESDVVVESALVDMYSKCGRV 702



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 131/504 (25%), Positives = 221/504 (43%), Gaps = 82/504 (16%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           DT +  L+ + +       +  GK+ H H L+ G+ +  + ++N L+ MY +CG    A 
Sbjct: 375 DTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSAS 434

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSW---------NMLI 110
            +F  M   +  SWN +I         +  L+L +   Q   +   W         N+L+
Sbjct: 435 KIFQLMEATDRISWNTIISAL-----DQNGLKLLSAGQQVHCDAVKWGLDLDTSVSNVLV 489

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA-REAVRLFKELNSDLVERLQ 169
             + + G +     +FN M   + ++WNSM+     +     E V +F   N+ +   L 
Sbjct: 490 KMYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPISETVEVF---NNMMRGGLI 546

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            +      ++ A + L+ LE GKQ H+ +L +G+  D+V+ ++L++ Y K GD NS   +
Sbjct: 547 PNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSCEHL 606

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
            + M    D                              +V WNSMISGYI N    EA+
Sbjct: 607 FSNMSGRRD------------------------------AVSWNSMISGYIYNGYLQEAM 636

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
                M  +G + D  T + +L+AC+S+  LE G ++H    +  +  DV+V SAL+D Y
Sbjct: 637 DCVWLMLHSGQIMDCCTFSIILNACASVAALERGMEMHAFGIRSHLESDVVVESALVDMY 696

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           SK G    A KLF+                               +M  ++  SWNSMI 
Sbjct: 697 SKCGRVDYASKLFN-------------------------------SMTQRNEFSWNSMIS 725

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G +++G   +AL+ F  M +     D  +  SV+SAC++   +E G + F  +   G+  
Sbjct: 726 GYARHGLGRKALETFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILP 785

Query: 470 DQIISTSLVDFYCKCGFI-KMDEY 492
                + ++D   + G I K+ EY
Sbjct: 786 QIEHYSCVIDLLGRAGKIDKIKEY 809



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 199/445 (44%), Gaps = 114/445 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +  G+Q+H   +K G L+    ++N L++MY  CG  +D   +F+ M   +  SWN+M+ 
Sbjct: 463 LSAGQQVHCDAVKWG-LDLDTSVSNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMM- 520

Query: 81  GFMKLGHK--EKSLQLFNVM------PQKNDFSW-------------------------- 106
           G M        +++++FN M      P K  F                            
Sbjct: 521 GVMASSQAPISETVEVFNNMMRGGLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGV 580

Query: 107 -------NMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVR-LF 157
                  N LIS +AK+G++ +   LF++M  RR+A++WNSMI  Y+ NG+ +EA+  ++
Sbjct: 581 MDDNVVDNALISCYAKSGDMNSCEHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCVW 640

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
             L+S  +  + C  F  + ++ ACA +AALE G ++H+  + + L+ D V+ S+LV++Y
Sbjct: 641 LMLHSGQI--MDCCTF--SIILNACASVAALERGMEMHAFGIRSHLESDVVVESALVDMY 696

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
                                          + CG+++ A ++F+  T  +   WNSMIS
Sbjct: 697 -------------------------------SKCGRVDYASKLFNSMTQRNEFSWNSMIS 725

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           GY  +    +AL  F +M R+    D  T  SVLSACS  G +E G +        G++ 
Sbjct: 726 GYARHGLGRKALETFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILP 785

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            +   S ++D   +                                G+I+  K   + MP
Sbjct: 786 QIEHYSCVIDLLGR-------------------------------AGKIDKIKEYIQRMP 814

Query: 398 NK-SLISWNSMIVGL--SQNGSPIE 419
            K + + W +++V    S++GS IE
Sbjct: 815 MKPNALIWRTVLVACRQSKDGSKIE 839



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 166/394 (42%), Gaps = 75/394 (19%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++ +AK   L  A  +F++MP+RNA++W  ++  YV  G   EA R+F+ +  ++  
Sbjct: 99  NHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQGITEEAFRVFRAMLREVEP 158

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             +  +F   T++ AC D      G     H L++  ++ S                   
Sbjct: 159 GCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYAS------------------- 199

Query: 227 NQVLNMMKEPDDFCLSALISGYANC--GKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                     +    +ALIS Y +C  G    A+RVFD T     + WN+++S Y    +
Sbjct: 200 ----------NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGD 249

Query: 285 DTEALLLFHKMRRNG----VLEDASTLASVLSACS-SLGFLEHGKQVHGHACKVGVIDDV 339
                 LF  M+R      +     T  S+++A S S G      QV     K G   D+
Sbjct: 250 VVSTFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSSGSSAVLDQVFVSVLKSGCSSDL 309

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V SAL+  +++ G+                               I++AK IF ++  K
Sbjct: 310 YVGSALVSAFARHGL-------------------------------IDEAKDIFLSLKEK 338

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANIS----SLEL 454
           + ++ N +IVGL +     EA+ +F    N + +  D + +  ++SA A  S     L  
Sbjct: 339 NAVTLNGLIVGLVKQHCSEEAVKIFVGTRNTIVVNADTYVV--LLSAIAEYSIPEEGLRK 396

Query: 455 GEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGFI 487
           G++    +   GL   +I +S  LV+ Y KCG I
Sbjct: 397 GKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAI 430



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 114/511 (22%), Positives = 185/511 (36%), Gaps = 144/511 (28%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           + LH+  +K+G LN  L ++N L+  Y +      A  +FDEM                 
Sbjct: 80  ENLHVELIKRG-LNHDLFLSNHLVNSYAKGARLAAASRVFDEM----------------- 121

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                         PQ+N  SW  L+SG                               Y
Sbjct: 122 --------------PQRNAVSWTCLLSG-------------------------------Y 136

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA--LEYGKQIHSHILVNG 202
           V  G   EA R+F+ +  ++    +  +F   T++ AC D     L +  Q+H  +    
Sbjct: 137 VLQGITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTE 196

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
              ++ + ++L+++YG C                               G    A+RVFD
Sbjct: 197 YASNTTVCNALISMYGSC-----------------------------TVGPPILAQRVFD 227

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG----VLEDASTLASVLSACS-SL 317
            T     + WN+++S Y    +      LF  M+R      +     T  S+++A S S 
Sbjct: 228 GTPIRDLITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSS 287

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G      QV     K G   D+ V SAL+  +++ G+  +A  +F  LK  + + LN +I
Sbjct: 288 GSSAVLDQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLI 347

Query: 378 T--VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS---QNGSPIE------------- 419
              V   C   E+A  IF    N  +++ ++ +V LS   +   P E             
Sbjct: 348 VGLVKQHCS--EEAVKIFVGTRNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHML 405

Query: 420 -----------------------ALDLFCNMNKLDLRMDKFSLASVISACAN--ISSLEL 454
                                  A+D    + +L    D+ S  ++ISA     +  L  
Sbjct: 406 RTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISALDQNGLKLLSA 465

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           G+QV       GLD D  +S  LV  Y +CG
Sbjct: 466 GQQVHCDAVKWGLDLDTSVSNVLVKMYGECG 496



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 35/259 (13%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D F  + L++ YA   ++  A RVFD     ++V W  ++SGY+      EA  +F  M 
Sbjct: 94  DLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQGITEEAFRVFRAML 153

Query: 297 RN---GVLEDASTLASVLSACSSLG--FLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           R    G    + T  ++L AC   G   L    QVHG   K     +  V +AL+  Y  
Sbjct: 154 REVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYASNTTVCNALISMYGS 213

Query: 352 --RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
              G P  A ++F    + D I  N +++VY+  G +     +F  M  +          
Sbjct: 214 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMDMQRED--------- 264

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTIIGLD 468
                             +++ LR  + +  S+I+A + +  S  + +QVF  V   G  
Sbjct: 265 ------------------SRIQLRPTEHTFGSLITATSLSSGSSAVLDQVFVSVLKSGCS 306

Query: 469 SDQIISTSLVDFYCKCGFI 487
           SD  + ++LV  + + G I
Sbjct: 307 SDLYVGSALVSAFARHGLI 325


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 211/472 (44%), Gaps = 98/472 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L +SC    + H  KQLH H LK   L+    +   L+ MY + G    A L+FD+   R
Sbjct: 133 LFKSCAKSKATHEAKQLHAHALKLA-LHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLR 191

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A+I G++  GH + + +LF+ +P K+  SWN +I+G+ ++G  + A   F  M 
Sbjct: 192 DAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQ 251

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             +                                  +  +   + +V+ AC  L +LE 
Sbjct: 252 EAD----------------------------------VSPNQSTMVSVLSACGHLRSLEL 277

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK I S +   G   +  L ++LV++Y KCG+  +A ++ + M++ D             
Sbjct: 278 GKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKD------------- 324

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                              ++WN+MI GY   +   EAL+LF  M R  V  +  T  +V
Sbjct: 325 ------------------VILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAV 366

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+SLG L+ GK VH +      ID  +  +  ++  S                    
Sbjct: 367 LPACASLGALDLGKWVHAY------IDKNLKGTGNVNNVS-------------------- 400

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            L  ++I +Y+ CG +E A+ +FR+M ++SL SWN+MI GL+ NG    AL LF  M   
Sbjct: 401 -LWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINE 459

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
             + D  +   V+SAC     +ELG + F+      ++ D  IS  L  + C
Sbjct: 460 GFQPDDITFVGVLSACTQAGFVELGHRYFS-----SMNKDYGISPKLQHYGC 506



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 182/380 (47%), Gaps = 40/380 (10%)

Query: 118 ELKTARTLFNDMPRR--NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           +L  A +LF+ +  +  N   WN++I  +        ++ LF ++   L   L  ++   
Sbjct: 74  DLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQM---LHSGLYPNSHTF 130

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            ++  +CA   A    KQ+H+H L   L     + +SL+++Y + G+   A  V +    
Sbjct: 131 PSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTL 190

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            D    +ALI+GY + G ++DARR+FD       V WN+MI+GY+ +    EAL  F +M
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           +   V  + ST+ SVLSAC  L  LE GK +       G   ++ + +AL+D YSK G  
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEI 310

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
             A KLF  ++  D IL NTMI  Y      E+A  +F  M              L +N 
Sbjct: 311 GTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVM--------------LRENV 356

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQII 473
           +P                 +  +  +V+ ACA++ +L+LG+ V A +   + G  +   +
Sbjct: 357 TP-----------------NDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNV 399

Query: 474 S--TSLVDFYCKCGFIKMDE 491
           S  TS++  Y KCG +++ E
Sbjct: 400 SLWTSIIVMYAKCGCVEVAE 419


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 143/528 (27%), Positives = 245/528 (46%), Gaps = 115/528 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LL+SC       +GK +H   ++  I   ++ + N L+ +Y + G+   A  +F+ M
Sbjct: 65  FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFETM 123

Query: 68  PR---RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLI-----SGF 113
            R   R+  SW+AM+  +   G +  ++++F       ++P  ND+ +  +I     S F
Sbjct: 124 RRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP--NDYCYTAVIRACSNSDF 181

Query: 114 AKAGEL--------------------------------KTARTLFNDMPRRNAIAWNSMI 141
              G +                                + A  +F+ M   N + W  MI
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              ++ GF REA+R F ++   ++   + D F L++V  ACA+L  L  GKQ+HS  + +
Sbjct: 242 TRCMQMGFPREAIRFFLDM---VLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL  D  +  SLV++Y KC    SA+                        G ++D R+VF
Sbjct: 299 GLVDD--VECSLVDMYAKC----SAD------------------------GSVDDCRKVF 328

Query: 262 DRTTDTSSVMWNSMISGYISN-NEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGF 319
           DR  D S + W ++I+GY+ N N  TEA+ LF +M   G +E +  T +S   AC +L  
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
              GKQV G A K G+  +  VA                               N++I++
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVA-------------------------------NSVISM 417

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           +    R+EDA+  F ++  K+L+S+N+ + G  +N +  +A  L   + + +L +  F+ 
Sbjct: 418 FVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTF 477

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           AS++S  AN+ S+  GEQ+ ++V  +GL  +Q +  +L+  Y KCG I
Sbjct: 478 ASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/525 (21%), Positives = 223/525 (42%), Gaps = 117/525 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
           ++++C+    + VG+      +K G   S + +   L+ M+++  N   +A  +FD+M  
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF--------------------------NVMPQKND 103
            N  +W  MI   M++G   ++++ F                          N+   K  
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 104 FSWNM-----------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCYVRN-G 148
            SW +           L+  +AK    G +   R +F+ M   + ++W ++I  Y++N  
Sbjct: 292 HSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN 351

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A EA+ LF E+ +     ++ + F  ++   AC +L+    GKQ+       GL  +S 
Sbjct: 352 LATEAINLFSEMITQ--GHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +                AN V++M  + D               +M DA+R F+  ++ +
Sbjct: 410 V----------------ANSVISMFVKSD---------------RMEDAQRAFESLSEKN 438

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V +N+ + G   N    +A  L  ++    +   A T AS+LS  +++G +  G+Q+H 
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K+G+                      +C         +  + N +I++YS CG I+ 
Sbjct: 499 QVVKLGL----------------------SC---------NQPVCNALISMYSKCGSIDT 527

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F  M N+++ISW SMI G +++G  I  L+ F  M +  ++ ++ +  +++SAC++
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSH 587

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKCGFI 487
           +  +  G + F       +  D  I         +VD  C+ G +
Sbjct: 588 VGLVSEGWRHFN-----SMYEDHKIKPKMEHYACMVDLLCRAGLL 627



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 158/360 (43%), Gaps = 81/360 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
           L+ +  +C    ++ +GKQLH   ++ G+++    +   L+ MY +C   G+  D   +F
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 65  DEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVM-----PQKNDFSW------------ 106
           D M   +  SW A+I G+MK      +++ LF+ M      + N F++            
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N +IS F K+  ++ A+  F  +  +N +++N+ +  
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG 448

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
             RN    +A +L  E+       L   AF  A+++   A++ ++  G+QIHS ++  GL
Sbjct: 449 TCRNLNFEQAFKLLSEITE---RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             +  + ++L+++Y KCG  ++A++V N M+                             
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFME----------------------------- 536

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + + W SMI+G+  +      L  F++M   GV  +  T  ++LSACS +G +  G
Sbjct: 537 --NRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 136/318 (42%), Gaps = 67/318 (21%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+   ++++ +C        GK +H+ ++   ++ DSVL +SL++LY K GD   A  V 
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 231 NMMK---EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
             M+   + D    SA+++ Y N G+  DA +VF                         E
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVF------------------------VE 156

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALL 346
            L L       G++ +     +V+ ACS+  F+  G+   G   K G  + DV V  +L+
Sbjct: 157 FLEL-------GLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLI 209

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D + K                                   E+A  +F  M   ++++W  
Sbjct: 210 DMFVK------------------------------GENSFENAYKVFDKMSELNVVTWTL 239

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI    Q G P EA+  F +M       DKF+L+SV SACA + +L LG+Q+ +     G
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299

Query: 467 LDSDQIISTSLVDFYCKC 484
           L  D  +  SLVD Y KC
Sbjct: 300 LVDD--VECSLVDMYAKC 315



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 19/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL       SI  G+Q+H   +K G L+   P+ N L+ MY +CG+   A  +F+ M
Sbjct: 477 FASLLSGVANVGSIRKGEQIHSQVVKLG-LSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             RN  SW +MI GF K G   + L+ FN M ++    N+ ++  ++S  +  G +    
Sbjct: 536 ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGW 595

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M   + I      +  M+    R G   +A      +        Q D  +  T 
Sbjct: 596 RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP------FQADVLVWRTF 649

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC   +  E GK     IL   LD +       L N+Y   G +  + ++   MKE
Sbjct: 650 LGACRVHSNTELGKLAARKIL--ELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 200/387 (51%), Gaps = 40/387 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+++C    ++ +G+ +H H  KKG   S L +   L+  Y +    ++A  +FDEM
Sbjct: 238 FSSLVKACTFMCAVELGQMVHCHIWKKG-FESHLFVQTALVDFYSKLEILSEARKVFDEM 296

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+ F+W AM+    ++G  + + +LF  MP++N  +WN +I G+A+ G +++A  LFN
Sbjct: 297 CERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFN 356

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ I+W +MI CY +N   ++A+ ++ E+    +  +  D   ++TV  ACA + A
Sbjct: 357 QMPTKDIISWTTMITCYSQNKQYQDALAIYSEMR---LNGIIPDEVTMSTVASACAHIGA 413

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE GK+IH +++  GL+ D  +GS+LV++Y KCG  + +  +   + + + +C +A+I G
Sbjct: 414 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 473

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A                          + GY       +AL +F  M R  ++ +  T 
Sbjct: 474 LA--------------------------VHGYAE-----KALRMFAIMEREKIMPNGVTF 502

Query: 308 ASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
            S+LSAC+  G ++ G+       +   +  D+     ++D  SK G  ++A +L   ++
Sbjct: 503 ISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSME 562

Query: 367 VY-DTILLNTMIT---VYSSCGRIEDA 389
              ++I+   ++    ++ +C   EDA
Sbjct: 563 FEPNSIIWGALLNGCKLHGNCEIAEDA 589



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 173/369 (46%), Gaps = 64/369 (17%)

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  M   N   +N+MI  +V  G+   A++ +  +  +    +   ++  ++++ AC  +
Sbjct: 191 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEE--SNVLPTSYTFSSLVKACTFM 248

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            A+E G+ +H HI   G +    + ++LV+ Y K    + A +V + M E D F  +A++
Sbjct: 249 CAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMV 308

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI------------------------- 280
           S  A  G M+ AR++F+   + ++  WN+MI GY                          
Sbjct: 309 SALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTT 368

Query: 281 ------SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
                  N +  +AL ++ +MR NG++ D  T+++V SAC+ +G LE GK++H +    G
Sbjct: 369 MITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQG 428

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  DV + SAL+D Y+K                               CG ++ +  IF 
Sbjct: 429 LNLDVYIGSALVDMYAK-------------------------------CGSLDLSLLIFF 457

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            + +K+L  WN++I GL+ +G   +AL +F  M +  +  +  +  S++SAC +   ++ 
Sbjct: 458 KLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDE 517

Query: 455 GEQVFARVT 463
           G   F  +T
Sbjct: 518 GRSRFLSMT 526



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 147/307 (47%), Gaps = 38/307 (12%)

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           S++  L+G C      N +       D F +   IS       ++     F +  + +  
Sbjct: 147 STINELHGLCASMIKTNAI------QDCFLVHQFISASFALNSVHYPVFAFTQMENPNVF 200

Query: 271 MWNSMISGYISNNEDTEALLLF-HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           ++N+MI G++       AL  + H +  + VL  + T +S++ AC+ +  +E G+ VH H
Sbjct: 201 VYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCH 260

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDA-------C----------------------- 359
             K G    + V +AL+D YSK  + S+A       C                       
Sbjct: 261 IWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSA 320

Query: 360 -KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
            KLF E+   +T   NTMI  Y+  G +E A+ +F  MP K +ISW +MI   SQN    
Sbjct: 321 RKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQ 380

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           +AL ++  M    +  D+ ++++V SACA+I +LELG+++   V   GL+ D  I ++LV
Sbjct: 381 DALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALV 440

Query: 479 DFYCKCG 485
           D Y KCG
Sbjct: 441 DMYAKCG 447


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 229/517 (44%), Gaps = 105/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+    +++G+++H   +  G  +    +AN L+ MY +CG   D+  LF  +  R
Sbjct: 88  VLKACSMKRDLNMGRKVHGMAVVTGFESDGF-VANTLVVMYAKCGLLDDSRRLFGGIVER 146

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMP---------------QKND------ 103
           N  SWNA+   +++     +++ LF       +MP               Q+ D      
Sbjct: 147 NVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIH 206

Query: 104 ------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                       FS N L+  ++KAGE++ A  +F D+   + ++WN++I   V +    
Sbjct: 207 GLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCND 266

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ L  E+        + + F L++ + ACA +   E G+Q+HS               
Sbjct: 267 LALMLLDEMKG---SGTRPNMFTLSSALKACAAMGFKELGRQLHS--------------- 308

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                            ++ M    D F    L+  Y+ C  M+DARR +D       + 
Sbjct: 309 ----------------SLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIA 352

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++ISGY    +  +A+ LF KM    +  + +TL++VL + +SL  ++  KQ+H  + 
Sbjct: 353 WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  D  V ++LLDTY K     +A K+F E    D +   +MIT Y           
Sbjct: 413 KSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAY----------- 461

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                               SQ G   EAL L+  M   D++ D F  +S+++ACAN+S+
Sbjct: 462 --------------------SQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSA 501

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            E G+Q+       G   D   S SLV+ Y KCG I+
Sbjct: 502 YEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIE 538



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 223/501 (44%), Gaps = 105/501 (20%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           +LH H +K G  +    + N L+ +Y +C     A  L DE    +  SW++++ G+++ 
Sbjct: 2   ELHAHLIKFG-FSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 86  GHKEKSLQLFNVM------------P---------------------------QKNDFSW 106
           G  E++L +FN M            P                           + + F  
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+  +AK G L  +R LF  +  RN ++WN++  CYV++    EAV LFKE+   +  
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEM---VRS 177

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +  + F ++ ++ ACA L   + G++IH  +L  GLD D                    
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQ------------------- 218

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                       F  +AL+  Y+  G++  A  VF        V WN++I+G + ++ + 
Sbjct: 219 ------------FSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCND 266

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            AL+L  +M+ +G   +  TL+S L AC+++GF E G+Q+H    K+    D+  A  L+
Sbjct: 267 LALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLV 326

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D YSK  M  DA + +  +   D I  N +I+ YS C                       
Sbjct: 327 DMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQC----------------------- 363

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
                   G  ++A+ LF  M   D+  ++ +L++V+ + A++ ++++ +Q+       G
Sbjct: 364 --------GDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415

Query: 467 LDSDQIISTSLVDFYCKCGFI 487
           + SD  +  SL+D Y KC  I
Sbjct: 416 IYSDFYVINSLLDTYGKCNHI 436



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 159/357 (44%), Gaps = 74/357 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L++C       +G+QLH   +K    +S L  A  L+ MY +C    DA   +D M
Sbjct: 287 LSSALKACAAMGFKELGRQLHSSLIKMDA-HSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-DFSW-------------------- 106
           P+++  +WNA+I G+ + G    ++ LF+ M  ++ DF+                     
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCK 405

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+  + K   +  A  +F +    + +A+ SMI  Y + G
Sbjct: 406 QIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYG 465

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA++L+ ++       ++ D FI ++++ ACA+L+A E GKQ+H H +  G   D  
Sbjct: 466 DGEEALKLYLQMQD---ADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIF 522

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
             +SLVN+Y K                               CG + DA R F    +  
Sbjct: 523 ASNSLVNMYAK-------------------------------CGSIEDADRAFSEIPNRG 551

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            V W++MI GY  +    EAL LF++M R+GV  +  TL SVL AC+  G +  GKQ
Sbjct: 552 IVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQ 608



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 62/296 (20%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           ++H+H++  G   D  L + LV LY KC  F                       GYA   
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRF-----------------------GYA--- 35

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                R++ D +++   V W+S++SGY+ N    EALL+F++M   GV  +  T  SVL 
Sbjct: 36  -----RKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLK 90

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           ACS    L  G++VHG A   G   D  VA                              
Sbjct: 91  ACSMKRDLNMGRKVHGMAVVTGFESDGFVA------------------------------ 120

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
            NT++ +Y+ CG ++D++ +F  +  ++++SWN++     Q+    EA+ LF  M +  +
Sbjct: 121 -NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             ++FS++ +++ACA +   +LG ++   +  +GLD DQ  + +LVD Y K G I+
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIE 235


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 196/449 (43%), Gaps = 105/449 (23%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+S F + G+L  A  +F  M  R+  +WN ++  Y + G+  EA+ L+  +   L  
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM---LWV 189

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++ D +    V+  C  L  L  G+++H H++  G                    F S 
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYG--------------------FESD 229

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V+N           ALI+ Y  CG +  AR VFDR      + WN+MISGY  N+   
Sbjct: 230 VDVVN-----------ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCL 278

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI---------- 336
           E L LF  MR   V  D  T+ SV+SAC +LG    G++VHG+  K G +          
Sbjct: 279 EGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLI 338

Query: 337 ---------------------DDVIVASALLDTYSKRGMPSDACKLFS----ELKVYDTI 371
                                 D++  +A++  Y K G+P  A + ++    E  V D I
Sbjct: 339 QMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEI 398

Query: 372 LL-----------------------------------NTMITVYSSCGRIEDAKHIFRTM 396
            +                                   N++I +YS C  I+ A  +F  +
Sbjct: 399 TIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRI 458

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           PNK++ISW S+I+GL  N    EAL  F  M  L L+ +  +L SV+SACA I +L  G+
Sbjct: 459 PNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGK 517

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ A     GL  D  +  +L+D Y +CG
Sbjct: 518 EIHAHALRTGLGFDGFLPNALLDMYVRCG 546



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 214/488 (43%), Gaps = 107/488 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     +  G+++HLH ++ G   S + + N L+ MY++CG+   A L+FD MPRR
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYG-FESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
           +  SWNAMI G+ +     + L+LF +M +                              
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 101 ----KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
               K  F       N LI   +  G    A  +F+ M  ++ ++W +MI  Y +NG   
Sbjct: 320 GYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPE 379

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +AV  +  +     E +  D   +A+V+ ACA L  L+ G  +H      GL    ++ +
Sbjct: 380 KAVETYTIMEH---EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVAN 436

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC                              C  ++ A  VF R  + + + 
Sbjct: 437 SLIDMYSKC-----------------------------RC--IDKALEVFHRIPNKNVIS 465

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W S+I G   N    EAL  F +M  + +  ++ TL SVLSAC+ +G L  GK++H HA 
Sbjct: 466 WTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHAL 524

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G+  D  + +ALLD Y +                               CGR+E A +
Sbjct: 525 RTGLGFDGFLPNALLDMYVR-------------------------------CGRMEPAWN 553

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F +   K + SWN ++ G +Q G    A++LF  M + D+  D+ +  S++ AC+    
Sbjct: 554 QFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGM 612

Query: 452 LELGEQVF 459
           +  G + F
Sbjct: 613 VTDGLEYF 620



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 175/409 (42%), Gaps = 96/409 (23%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA++  F++ G   ++  +F  M +++ FSWN+L+ G+AKAG    A  L++ M      
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM------ 186

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
                                       L   ++ D +    V+  C  L  L  G+++H
Sbjct: 187 ----------------------------LWVGIRPDVYTFPCVLRTCGGLPDLARGREVH 218

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            H++  G + D  + ++L+ +Y KCGD  SA  V + M   D    +A+           
Sbjct: 219 LHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAM----------- 267

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                               ISGY  N+   E L LF  MR   V  D  T+ SV+SAC 
Sbjct: 268 --------------------ISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACE 307

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
           +LG    G++VHG+  K G + +V V ++L+  +S  G   +A  +FS+++  D +    
Sbjct: 308 ALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTA 367

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           MI+                               G  +NG P +A++ +  M    +  D
Sbjct: 368 MIS-------------------------------GYEKNGLPEKAVETYTIMEHEGVVPD 396

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           + ++ASV+SACA +  L+ G  +       GL S  I++ SL+D Y KC
Sbjct: 397 EITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKC 445



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 22/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  +L +C    ++  GK++H H L+ G+  +  LP  N LL MY+RCG    A   F+ 
Sbjct: 500 LVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCGRMEPAWNQFNS 557

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTA 122
              ++  SWN ++ G+ + G    +++LF+ M +     ++ ++  L+   +++G +   
Sbjct: 558 C-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDG 616

Query: 123 RTLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
              F  M  +  IA N     S++    R G   +A    K++  D       D  I   
Sbjct: 617 LEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPID------PDPAIWGA 670

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           ++ AC     +E G+    HI    +D  SV    L+ NLY   G ++   +V  +M+E
Sbjct: 671 LLNACRIYQNVELGELAAQHIF--EMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRE 727



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%)

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           L N +++++   G + +A ++F  M  + L SWN ++ G ++ G   EAL+L+  M  + 
Sbjct: 131 LGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG 190

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +R D ++   V+  C  +  L  G +V   V   G +SD  +  +L+  Y KCG I
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDI 246


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 211/455 (46%), Gaps = 99/455 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G Q+H H LK G     L +   L+ MY++     DA  +FD    R
Sbjct: 69  LLKSCAKLKASKEGLQIHGHVLKLG-YELDLYVHTSLISMYVQNERLEDAHKVFDRSSHR 127

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A                               L++G+A  G +++AR +F+++P
Sbjct: 128 DVVSYTA-------------------------------LVTGYASRGYIESARNMFDEIP 156

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+MI  YV  G  +EA+ LFKE+   +   ++ D   + TVI A A   ++E 
Sbjct: 157 VKDVVSWNAMISGYVETGNYKEALELFKEM---MKTNVRPDESTMVTVISASARSGSIEL 213

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G                    F S  +++N           ALI  Y+ 
Sbjct: 214 GRQVHSWIADHG--------------------FGSNLKIVN-----------ALIDFYSK 242

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG+M  A  +F   +    + WN +I GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 243 CGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSI 302

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG ++ G+ +H +  K   GV +   + ++L+D YSK                 
Sbjct: 303 LHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSK----------------- 345

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A  +F +M +KSL +WN+MI G + +G    A D+F  M 
Sbjct: 346 --------------CGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMR 391

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           K +++ D  +   ++SAC++   L+LG  +F  +T
Sbjct: 392 KNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMT 426



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 179/372 (48%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  +     A++L+  + S     L  +++    +
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMIS---LGLLPNSYTFPFL 69

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA L A + G QIH H+L  G + D  + +SL+++Y +      A++V +     D 
Sbjct: 70  LKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +AL++GYA+ G +  AR +FD       V WN+MISGY+      EAL LF +M + 
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ +V+SA +  G +E G+QVH      G   ++ + +AL+D YSK G    A
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I                               SWN +I G +      
Sbjct: 250 CGLFLGLSYKDVI-------------------------------SWNILIGGYTHLNLYK 278

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
           EAL LF  M +     +  ++ S++ ACA++ ++++G    V+    + G+ +   + TS
Sbjct: 279 EALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 338

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 339 LIDMYSKCGDIE 350


>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 212/481 (44%), Gaps = 81/481 (16%)

Query: 75  WNAMIEGFMKLG---HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
           W A +E F  L    H E S          N  S N+ IS   + G L  A+TLFN+MP 
Sbjct: 16  WKACLELFSTLCEGLHTENS----------NIISTNIYISRHVRDGHLDLAQTLFNEMPV 65

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+ ++WN MI  Y + G   EA+ L  E++ +    ++ +    ++++  CA       G
Sbjct: 66  RSVVSWNIMISGYSKFGKYSEALNLASEMHCN---NVKLNETTFSSLLSICAHSGCSSEG 122

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           KQ H  +L +GL     +GS+LV  Y    D + A QV + + + +D     L+ GY  C
Sbjct: 123 KQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKC 182

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE-ALLLFHKMRRNGVLE-DASTLAS 309
             M+DA  +F +      V W +MIS Y  +  + +  L LF  MR NG +E +  T  S
Sbjct: 183 NLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDS 242

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK------------------ 351
           V+ AC  + +L  GK VHG   K G   D  V SAL+  Y +                  
Sbjct: 243 VVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPC 302

Query: 352 -------------RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
                         G  +DA ++F +L+  + +  N M+  Y++ GRIE +K +F  M +
Sbjct: 303 LKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTH 362

Query: 399 KSL--------------------------------ISWNSMIVGLSQNGSPIEALDLFCN 426
           K+                                 ++WNSMI G  QN     AL L+  
Sbjct: 363 KTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYIT 422

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M +  +   + + +++  AC  +  ++LG+ +         DS+  + TSL+D Y KCG 
Sbjct: 423 MCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGS 482

Query: 487 I 487
           I
Sbjct: 483 I 483



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 205/500 (41%), Gaps = 129/500 (25%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ H   LK G            LQ++ R G+                    A++  + 
Sbjct: 122 GKQFHCLVLKSG------------LQIFERVGS--------------------ALVYFYA 149

Query: 84  KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
            +     + Q+F+ +  KND  W++L+ G+ K   +  A  LF  +P R+ +AW +MI  
Sbjct: 150 NINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISA 209

Query: 144 YVRNGF-AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
           Y R+    +  + LF  +  +    ++ + F   +V+ AC  +  L +GK +H  +   G
Sbjct: 210 YARSEHNCKRGLELFCSMRMN--GEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYG 267

Query: 203 LDFDSVLGSSLVNLYGKC-------------------------------GDFNSANQVLN 231
             FD  + S+L+  Y +C                               G  N A ++  
Sbjct: 268 FHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFC 327

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS---------------------- 269
            ++E +    + ++ GYA  G++  ++R+F+R T  ++                      
Sbjct: 328 KLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKL 387

Query: 270 ----------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                     V WNSMISG I N++   AL L+  M R  V    ST +++  AC+ L +
Sbjct: 388 FESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEY 447

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           ++ G+ +H HA +     +V V ++L+D Y+K                            
Sbjct: 448 IQLGQALHVHAIREAFDSNVYVGTSLIDMYAK---------------------------- 479

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              CG I DA+  F ++   ++ ++ ++I G   +G  IEA  +F  M K  +  +  +L
Sbjct: 480 ---CGSIYDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATL 536

Query: 440 ASVISACANISSLELGEQVF 459
             ++SAC+    ++ G  VF
Sbjct: 537 LGILSACSCAGMVKEGMTVF 556



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 165/378 (43%), Gaps = 62/378 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C     +  GK +H    K G  +    + + L+  Y +C    +A  ++D M R 
Sbjct: 243 VVRACGRMRYLSWGKVVHGILTKYG-FHFDHSVCSALILFYCQCEAIDNAKAVYDSMERP 301

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
              + N+++EG +  G    + ++F  + +KN  S+N+++ G+A +G ++ ++ LF  M 
Sbjct: 302 CLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMT 361

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD------------LVERLQCDAFI---- 174
            +   + N+MI  Y RNG   +A +LF+ + S+             ++  Q +  +    
Sbjct: 362 HKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYI 421

Query: 175 -------------LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
                         + +  AC  L  ++ G+ +H H +    D +  +G+SL+++Y KCG
Sbjct: 422 TMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCG 481

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
               A      +  P+    +ALI+GY + G   +A  VFD                   
Sbjct: 482 SIYDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDE------------------ 523

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVI 340
                   +L HK+  NG     +TL  +LSACS  G ++ G  V H      GVI  + 
Sbjct: 524 --------MLKHKVPPNG-----ATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLE 570

Query: 341 VASALLDTYSKRGMPSDA 358
             + ++D   + G   +A
Sbjct: 571 HYACVVDLLGRSGRLYEA 588


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 140/513 (27%), Positives = 224/513 (43%), Gaps = 124/513 (24%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------- 101
           MP RN  SWN +I    + G   ++L+++  M Q+                         
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 102 --------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                         + F  N L+  + K G +  A  LF+ MP  N +++ +M+    + 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY--------GKQIHSHIL 199
           G   +A+RLF  ++      ++ D   +++V+GACA   A +Y         + IH+ ++
Sbjct: 121 GAVDDALRLFARMSR---TGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVV 177

Query: 200 VNGLDFDSVLGSSLVNLY-------------------------------GKCGDFNSANQ 228
             G   D  +G+SLV+LY                               G+ G +  A +
Sbjct: 178 RKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAME 237

Query: 229 VLNMMKE----PDDFCLSALISGYANCGKMND---ARRVFDRTTDTSSVMWNSMISGYIS 281
           VL  M+E    P++   S ++   A+C K  D   AR +FD+    S   WN+++SGY  
Sbjct: 238 VLEFMQESGFEPNEVTYSNML---ASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQ 294

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
                E + LF +M+   V  D +TLA +LS+CS LG  E GKQVH  + ++ + +D+ V
Sbjct: 295 EELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFV 354

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           AS L+D YSK                               CG++  A  IF  M  + +
Sbjct: 355 ASGLIDIYSK-------------------------------CGQVGIALIIFNMMTERDV 383

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           + WNSMI GL+ +    EA D    M +  +   + S AS+I+ CA +SS+  G Q+ A+
Sbjct: 384 VCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQ 443

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           V   G D +  +  SL+D Y K G   MD+  L
Sbjct: 444 VLKDGYDQNVYVGCSLIDMYAKSG--NMDDARL 474



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 208/444 (46%), Gaps = 74/444 (16%)

Query: 13  QSC----NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           Q+C    N   +I + + +H   ++KG   S   + N L+ +Y +     +A+ +F+ + 
Sbjct: 154 QACAGDYNVARAIQLAQSIHALVVRKG-FGSDQHVGNSLVDLYAKGMKMDEAIKVFESLS 212

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
             +  SWN +I G+ +LG  E+++++   M +     N+ +++ +++   KA ++ +AR 
Sbjct: 213 SVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARA 272

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ +P+ +   WN+++  Y +    +E + LF+ +     + +Q D   LA ++ +C+ 
Sbjct: 273 MFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQH---QNVQPDRTTLAVILSSCSR 329

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L   E GKQ+HS                                 + ++   D F  S L
Sbjct: 330 LGNFELGKQVHS-------------------------------ASVRLLLHNDMFVASGL 358

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           I  Y+ CG++  A  +F+  T+   V WNSMISG   ++   EA     +MR NG+    
Sbjct: 359 IDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTE 418

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           S+ AS+++ C+ L  +  G+Q+H    K G   +V V  +L+D Y+K             
Sbjct: 419 SSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAK------------- 465

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                              G ++DA+  F  M  K+L++WN MI G +QNG   +A++LF
Sbjct: 466 ------------------SGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELF 507

Query: 425 CNMNKLDLRMDKFSLASVISACAN 448
             M     + D  +  +V++ C++
Sbjct: 508 EYMLTTKQKPDSVTFIAVLTGCSH 531



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 169/414 (40%), Gaps = 79/414 (19%)

Query: 29  LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88
           L F+++          + +L   ++  +   A  +FD++P+ +  +WN ++ G+ +    
Sbjct: 239 LEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELH 298

Query: 89  EKSLQLF------NVMPQK--------------------------------ND-FSWNML 109
           ++++ LF      NV P +                                ND F  + L
Sbjct: 299 QETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGL 358

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I  ++K G++  A  +FN M  R+ + WNSMI     +  + EA    K++  + +   +
Sbjct: 359 IDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTE 418

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
                 A++I  CA L+++  G+Q+H+ +L +G D +  +G SL+++Y K G+ +     
Sbjct: 419 SS---YASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMD----- 470

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                                     DAR  F+     + V WN MI GY  N    +A+
Sbjct: 471 --------------------------DARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAV 504

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDT 348
            LF  M       D+ T  +VL+ CS  G ++      +      G+   V   + L+D 
Sbjct: 505 ELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDA 564

Query: 349 YSKRGMPSDACKLFSELKVYD-----TILLNTMITVYSSCGRIEDAKHIFRTMP 397
            ++    ++   +  ++   D      +LL   +  +++      AKH+FR  P
Sbjct: 565 LARAARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDP 618



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 43/215 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L SC+   +  +GKQ+H   ++  +L++ + +A+ L+ +Y +CG    AL++F+ M
Sbjct: 320 LAVILSSCSRLGNFELGKQVHSASVRL-LLHNDMFVASGLIDIYSKCGQVGIALIIFNMM 378

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-------------------------PQ-- 100
             R+   WN+MI G       E++      M                         PQ  
Sbjct: 379 TERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGR 438

Query: 101 -------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K+ +  N+     LI  +AK+G +  AR  FN M  +N +AWN MIH Y +NG
Sbjct: 439 QMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNG 498

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
           F  +AV LF+ +   L  + + D+     V+  C+
Sbjct: 499 FGEKAVELFEYM---LTTKQKPDSVTFIAVLTGCS 530



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A ++  C    SI  G+Q+H   LK G  +  + +   L+ MY + GN  DA L F+ M 
Sbjct: 422 ASMINLCARLSSIPQGRQMHAQVLKDG-YDQNVYVGCSLIDMYAKSGNMDDARLFFNCMI 480

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND-FSWNMLISGFAKAGELKTART 124
            +N  +WN MI G+ + G  EK+++LF  M    QK D  ++  +++G + +G +  A T
Sbjct: 481 VKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVT 540

Query: 125 LFNDMPRRNAI 135
            FN M     I
Sbjct: 541 FFNSMESNYGI 551


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 136/533 (25%), Positives = 226/533 (42%), Gaps = 111/533 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFD 65
           LA L++S  +     +G+  H   +K   L++ LP  I N L+ MY +   P  A LL  
Sbjct: 9   LASLVESAVSTQCSRLGRAAHAQIIK--TLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLS 66

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISG--------- 112
             P R+  +W A+I G ++ G    +L  F+ M     Q NDF++               
Sbjct: 67  LTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLV 126

Query: 113 --------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                                     ++KAG  + AR +F++MP RN   WN+ +   V 
Sbjct: 127 GKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVL 186

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G   +A+  F E      E  + +       + ACA  + L  G+Q+H  +L +G + D
Sbjct: 187 EGRYDDALTAFIEFRH---EGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEAD 243

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + + L++ YGKC     +  + + + +P+D                            
Sbjct: 244 VSVANGLIDFYGKCHQVGCSEIIFSGISKPND---------------------------- 275

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W SMI  Y+ N+E+ +A L+F + R+ G+      ++SVLSAC+ L  LE GK V
Sbjct: 276 ---VSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSV 332

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  A K  V+ ++ V SAL+D Y K                               CG I
Sbjct: 333 HTLAVKACVVGNIFVGSALVDMYGK-------------------------------CGSI 361

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM--DKFSLASVIS 444
           EDA+  F  MP ++L++WN+MI G +  G    A+ LF  M     R+  +  +   V+S
Sbjct: 362 EDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLS 421

Query: 445 ACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           AC+   S+ +G ++F  +    G++        +VD   + G ++    ++ +
Sbjct: 422 ACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKK 474


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 214/442 (48%), Gaps = 80/442 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C+   ++  G+Q+H H +K GI  S + I +  + MY   G   DA  +F      
Sbjct: 138 LFKACSVAQAVQEGRQIHGHVVKHGI-GSDVHIKSAGIHMYASFGRLEDARKMFYS-GES 195

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +   WN MI+G++K G  E +  LF  MP KN  SWN++I+G AK G L  AR LF++M 
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMS 255

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ I+W+SM+  Y+  G  +EA+ +F+++     E  +   FIL++V+ AC+++ A++ 
Sbjct: 256 ERDEISWSSMVDGYISAGRYKEALEIFQQMQR---EETRPGRFILSSVLAACSNIGAIDQ 312

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H+++  N +  D+VLG++L+++Y KCG  +   +V   MKE + F  +A+I G A 
Sbjct: 313 GRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAI 372

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+  DA  +F +  +                           +M+ NG+     TL  V
Sbjct: 373 HGRAEDALELFSKLQEG--------------------------RMKPNGI-----TLVGV 401

Query: 311 LSACSSLGFLEHG-------KQVHG-------HACKVGVI---------DDVIVASALLD 347
           L+AC+  GF++ G       ++ +G       + C V ++         +D+I +  +  
Sbjct: 402 LTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP 461

Query: 348 TYSKRGMPSDAC-------------KLFSELKVYDTILLNTMITVYSSCGRIEDAKHI-- 392
             +  G    AC             K+  EL+  ++     +  +Y+  GR +D   I  
Sbjct: 462 NAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRK 521

Query: 393 ------FRTMPNKSLISWNSMI 408
                  +T+P  S++  N  +
Sbjct: 522 LMKDRGIKTVPGVSIVDLNGTV 543



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 182/402 (45%), Gaps = 68/402 (16%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A  +F+ +P  N   WN +I   + N    +A+  +  +  D     + + F   T+  A
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA----RPNKFTYPTLFKA 141

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C+   A++ G+QIH H++ +G+  D  + S+ +++Y   G    A ++     E D  C 
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCW 200

Query: 242 SALISGYANCG-------------------------------KMNDARRVFDRTTDTSSV 270
           + +I GY  CG                                + DAR++FD  ++   +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+SM+ GYIS     EAL +F +M+R         L+SVL+ACS++G ++ G+ VH + 
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            +  +  D ++ +ALLD Y+K                               CGR++   
Sbjct: 321 KRNSIKLDAVLGTALLDMYAK-------------------------------CGRLDMGW 349

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M  + + +WN+MI GL+ +G   +AL+LF  + +  ++ +  +L  V++ACA+  
Sbjct: 350 EVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409

Query: 451 SLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            ++ G ++F  +    G+D +      +VD   + G     E
Sbjct: 410 FVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAE 451



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 35/286 (12%)

Query: 237 DDFCLSALISGYANC--GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           D +   AL+  YAN      + A +VF    + +  +WN +I G + NN+  +A+  + +
Sbjct: 64  DHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGR 123

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M  +    +  T  ++  ACS    ++ G+Q+HGH  K G+  DV + SA +  Y+  G 
Sbjct: 124 MVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGR 182

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             DA K+F   +  D +  NTMI  Y  CG +E AK +F  MP K++ SWN MI GL++ 
Sbjct: 183 LEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKG 241

Query: 415 GS-------------------------------PIEALDLFCNMNKLDLRMDKFSLASVI 443
           G+                                 EAL++F  M + + R  +F L+SV+
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +AC+NI +++ G  V A +    +  D ++ T+L+D Y KCG + M
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDM 347



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C+   +I  G+ +H  +LK+  +     +   LL MY +CG       +F+EM
Sbjct: 297 LSSVLAACSNIGAIDQGRWVHA-YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM 355

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             R  F+WNAMI G    G  E +L+LF+ + +     N  +   +++  A AG +    
Sbjct: 356 KEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGL 415

Query: 124 TLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F  M     +      +  M+    R+G   EA  L   +       ++ +A +   +
Sbjct: 416 RIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMP------MKPNAAVWGAL 469

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC      +  +++   IL+     +S     L N+Y K G F+  +++  +MK+
Sbjct: 470 LGACRIHGNFDLAERV-GKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKD 525


>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
 gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 783

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 202/415 (48%), Gaps = 69/415 (16%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N ++    K G  +++ Q+F+ MP++++F+WN +I  ++ +  L  A  LF   P +N I
Sbjct: 32  NLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTI 91

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN++I  Y ++G   EA  LF E+ SD    ++ + + L +V+  C  L  L  G+QIH
Sbjct: 92  SWNALISGYCKSGSKVEAFNLFWEMQSD---GIKPNEYTLGSVLRMCTSLVLLLRGEQIH 148

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
            H +  G D D       VN+                        ++ L++ YA C +++
Sbjct: 149 GHTIKTGFDLD-------VNV------------------------VNGLLAMYAQCKRIS 177

Query: 256 DARRVFDRTT-DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           +A  +F+    + ++V W SM++GY  N    +A+  F  +RR G   +  T  SVL+AC
Sbjct: 178 EAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTAC 237

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           +S+     G QVH    K G   ++ V SAL+D Y+K                       
Sbjct: 238 ASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAK----------------------- 274

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
                   C  +E A+ +   M    ++SWNSMIVG  + G   EAL +F  M++ D+++
Sbjct: 275 --------CREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKI 326

Query: 435 DKFSLASVISACANISSLELGEQVFARVTII--GLDSDQIISTSLVDFYCKCGFI 487
           D F++ S+++ C  +S  E+     A   I+  G  + ++++ +LVD Y K G +
Sbjct: 327 DDFTIPSILN-CFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIM 380



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 154/296 (52%), Gaps = 37/296 (12%)

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
           +G  IHS+     L  + +LG        K G  + A Q+ + M E D+F  + +I  Y+
Sbjct: 16  FGSCIHSYADRTKLHSNLLLGD-----LSKSGRVDEARQMFDKMPERDEFTWNTMIVAYS 70

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           N  +++DA ++F      +++ WN++ISGY  +    EA  LF +M+ +G+  +  TL S
Sbjct: 71  NSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGS 130

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL  C+SL  L  G+Q+HGH  K G   DV V                            
Sbjct: 131 VLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNV---------------------------- 162

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
              +N ++ +Y+ C RI +A+++F TM   K+ ++W SM+ G SQNG   +A++ F ++ 
Sbjct: 163 ---VNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLR 219

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +   + ++++  SV++ACA++S+  +G QV   +   G  ++  + ++L+D Y KC
Sbjct: 220 REGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKC 275



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 134/531 (25%), Positives = 239/531 (45%), Gaps = 89/531 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +   +  G+Q+H H +K G  +  + + N LL MY +C   ++A  LF+ M
Sbjct: 128 LGSVLRMCTSLVLLLRGEQIHGHTIKTG-FDLDVNVVNGLLAMYAQCKRISEAEYLFETM 186

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------------- 100
              +N  +W +M+ G+ + G   K+++ F  + +                          
Sbjct: 187 EGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVG 246

Query: 101 --------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                   K+ F  N+     LI  +AK  E+++AR L   M   + ++WNSMI   VR 
Sbjct: 247 VQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQ 306

Query: 148 GFAREAVRLFKELNSDLVER-LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           G   EA+ +F  ++    ER ++ D F + +++  C  L+  E      +H L+    + 
Sbjct: 307 GLIGEALSMFGRMH----ERDMKIDDFTIPSILN-CFALSRTEMKIASSAHCLIVKTGYA 361

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           +     LVN                          +AL+  YA  G M+ A +VF+   +
Sbjct: 362 TY---KLVN--------------------------NALVDMYAKRGIMDSALKVFEGMIE 392

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              + W ++++G   N    EAL LF  MR  G+  D    ASVLSA + L  LE G+QV
Sbjct: 393 KDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQV 452

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG+  K G    + V ++L+  Y+K G   DA  +F+ +++ D I    +I  Y+  G +
Sbjct: 453 HGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLL 512

Query: 387 EDAKHIFRTMPNKSLIS-----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
           EDA+  F +M     I+     +  MI    ++G  ++   L   ++++++  D     +
Sbjct: 513 EDAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKVEQL---LHQMEVEPDATVWKA 569

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIIS-TSLVDFYCKCGFIKMDE 491
           +++A     ++E GE+  A  T++ L+ +  +    L + Y   G  + DE
Sbjct: 570 ILAASRKHGNIENGER--AAKTLMELEPNNAVPYVQLSNMYSAAG--RQDE 616



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 189/436 (43%), Gaps = 84/436 (19%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +  +  VG Q+H   +K G   + + + + L+ MY +C     A  L + M   
Sbjct: 233 VLTACASVSACRVGVQVHCCIVKSG-FKTNIYVQSALIDMYAKCREMESARALLEGMEVD 291

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSW-------------------- 106
           +  SWN+MI G ++ G   ++L +F  M +++    DF+                     
Sbjct: 292 DVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSA 351

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N L+  +AK G + +A  +F  M  ++ I+W +++     NG  
Sbjct: 352 HCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSY 411

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA++LF  +    V  +  D  + A+V+ A A+L  LE+G+Q+H + + +G      + 
Sbjct: 412 DEALKLFCNMR---VGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVN 468

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SLV +Y KCG    AN + N M+  D    + LI GYA  G + DA+R FD       +
Sbjct: 469 NSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSMRTVYGI 528

Query: 271 M-----WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
                 +  MI  +  + +  +   L H+M    V  DA+   ++L+A    G +E+G++
Sbjct: 529 TPGPEHYACMIDLFGRSGDFVKVEQLLHQME---VEPDATVWKAILAASRKHGNIENGER 585

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
                                           A K   EL+  + +    +  +YS+ GR
Sbjct: 586 --------------------------------AAKTLMELEPNNAVPYVQLSNMYSAAGR 613

Query: 386 IEDAKHIFRTMPNKSL 401
            ++A ++ R M ++++
Sbjct: 614 QDEAANVRRLMKSRNI 629



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 81/148 (54%)

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           LL   SK G   +A ++F ++   D    NTMI  YS+  R+ DA+ +FR+ P K+ ISW
Sbjct: 34  LLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISW 93

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++I G  ++GS +EA +LF  M    ++ ++++L SV+  C ++  L  GEQ+      
Sbjct: 94  NALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIK 153

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            G D D  +   L+  Y +C  I   EY
Sbjct: 154 TGFDLDVNVVNGLLAMYAQCKRISEAEY 181


>gi|297823509|ref|XP_002879637.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325476|gb|EFH55896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 186/381 (48%), Gaps = 5/381 (1%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I+  AK+G + +AR +F++M  R+ +AWN+M+  Y   G  +EA+ LF +L        +
Sbjct: 11  IASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLR---FSDSK 67

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D +    ++  C  L  +  G++I S ++ +G    S + +SL+++YGKC D  SAN+V
Sbjct: 68  PDDYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKCSDTLSANKV 127

Query: 230 LNMM--KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
              M     ++    +L+  Y N  +   A  VF          WN MISG+    +   
Sbjct: 128 FRDMCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGKIES 187

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
            L LF +M  +    D  T +S+++AC+    + +G  VH    + G    V   +++L 
Sbjct: 188 CLRLFKEMLESEFEPDCFTFSSLMNACADSSNVVYGWMVHAVMVRNGWYSAVEAKNSVLS 247

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y+K G   D  +    ++V   +  N++I      G  + A  +FR  P K++++W +M
Sbjct: 248 FYAKLGCKDDVMRELESIEVLTQVSWNSIIDACVKVGETDKALEVFRLAPEKNIVTWTTM 307

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G  +NG   +AL  F  M K  +  D F+  +V+ AC+ ++ L  G+ +   +   G 
Sbjct: 308 IAGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGF 367

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
                +  +LV+ Y KCG IK
Sbjct: 368 QGYAYVGNALVNLYAKCGDIK 388



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 225/488 (46%), Gaps = 74/488 (15%)

Query: 6   DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           DY    +L +C +  ++ +G+++    ++ G   S+ P+ N L+ MY +C +   A  +F
Sbjct: 70  DYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASS-PVNNSLIDMYGKCSDTLSANKVF 128

Query: 65  DEM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
            +M    RN  +W +++  +M     E +L +F  MP++  F+WN++ISG A+ G++++ 
Sbjct: 129 RDMCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGKIES- 187

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
                                          +RLFKE+   L    + D F  ++++ AC
Sbjct: 188 ------------------------------CLRLFKEM---LESEFEPDCFTFSSLMNAC 214

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           AD + + YG  +H+ ++ NG        +S+++ Y K G  +   + L  ++       +
Sbjct: 215 ADSSNVVYGWMVHAVMVRNGWYSAVEAKNSVLSFYAKLGCKDDVMRELESIEVLTQVSWN 274

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           ++I      G+ + A  VF    + + V W +MI+GY  N +  +AL  F +M ++GV  
Sbjct: 275 SIIDACVKVGETDKALEVFRLAPEKNIVTWTTMIAGYGRNGDGEQALRFFVEMMKSGVDS 334

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D     +VL ACS L  L HGK +HG     G      V +AL++ Y+K           
Sbjct: 335 DHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAK----------- 383

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                               CG I+++   F  + NK L+SWN+M+     +G   +AL+
Sbjct: 384 --------------------CGDIKESNRAFGDIANKDLVSWNTMLFAFGVHGLADQALE 423

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI---IGLDSDQIISTSLVD 479
           L+ NM    ++ D  +   +++ C++   +E G  +F  +     I L+ D +  T ++D
Sbjct: 424 LYDNMIASGIKPDNVTFIGLLTTCSHSGLVEKGCAIFESMVKDYGIPLEVDHV--TCMID 481

Query: 480 FYCKCGFI 487
            + + G +
Sbjct: 482 MFGRGGHL 489



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 157/368 (42%), Gaps = 70/368 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+ +C    ++  G  +H   ++ G   S +   N +L  Y + G   D +   + +
Sbjct: 207 FSSLMNACADSSNVVYGWMVHAVMVRNGWY-SAVEAKNSVLSFYAKLGCKDDVMRELESI 265

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                 SWN++I+  +K+G  +K+L++F + P+KN  +W  +I+G               
Sbjct: 266 EVLTQVSWNSIIDACVKVGETDKALEVFRLAPEKNIVTWTTMIAG--------------- 310

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                           Y RNG   +A+R F E+    V+    D F    V+ AC+ LA 
Sbjct: 311 ----------------YGRNGDGEQALRFFVEMMKSGVDS---DHFAYGAVLHACSGLAL 351

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L +GK IH  ++  G    + +G++LVNLY KCGD   +N                    
Sbjct: 352 LGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKESN-------------------- 391

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                      R F    +   V WN+M+  +  +    +AL L+  M  +G+  D  T 
Sbjct: 392 -----------RAFGDIANKDLVSWNTMLFAFGVHGLADQALELYDNMIASGIKPDNVTF 440

Query: 308 ASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             +L+ CS  G +E G  +     K  G+  +V   + ++D + + G  ++A  L +   
Sbjct: 441 IGLLTTCSHSGLVEKGCAIFESMVKDYGIPLEVDHVTCMIDMFGRGGHLAEAKDLAT--- 497

Query: 367 VYDTILLN 374
            Y+++++N
Sbjct: 498 TYNSLVIN 505



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 125/247 (50%), Gaps = 2/247 (0%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           L++ I+  A  G++  AR++FD  TD  +V WN+M++ Y       EA+ LF ++R +  
Sbjct: 7   LTSKIASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRFSDS 66

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  +  ++LS C SLG +  G+++     + G      V ++L+D Y K      A K
Sbjct: 67  KPDDYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKCSDTLSANK 126

Query: 361 LFSELKVY--DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           +F ++  +  + +   +++  Y +  + E A  +F  MP +   +WN MI G +Q G   
Sbjct: 127 VFRDMCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGKIE 186

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
             L LF  M + +   D F+ +S+++ACA+ S++  G  V A +   G  S      S++
Sbjct: 187 SCLRLFKEMLESEFEPDCFTFSSLMNACADSSNVVYGWMVHAVMVRNGWYSAVEAKNSVL 246

Query: 479 DFYCKCG 485
            FY K G
Sbjct: 247 SFYAKLG 253



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 61/114 (53%)

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           + L + I   +  GRI  A+ +F  M ++  ++WN+M+   S  G   EA+ LF  +   
Sbjct: 5   VRLTSKIASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRFS 64

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           D + D +S  +++S C ++ ++ LG ++ + V   G  +   ++ SL+D Y KC
Sbjct: 65  DSKPDDYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKC 118


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 143/528 (27%), Positives = 245/528 (46%), Gaps = 115/528 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LL+SC       +GK +H   ++  I   ++ + N L+ +Y + G+   A  +F+ M
Sbjct: 65  FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFETM 123

Query: 68  PR---RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLI-----SGF 113
            R   R+  SW+AM+  +   G +  ++++F       ++P  ND+ +  +I     S F
Sbjct: 124 RRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP--NDYCYTAVIRACSNSDF 181

Query: 114 AKAGEL--------------------------------KTARTLFNDMPRRNAIAWNSMI 141
              G +                                + A  +F+ M   N + W  MI
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              ++ GF REA+R F ++   ++   + D F L++V  ACA+L  L  GKQ+HS  + +
Sbjct: 242 TRCMQMGFPREAIRFFLDM---VLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL  D  +  SLV++Y KC    SA+                        G ++D R+VF
Sbjct: 299 GLVDD--VECSLVDMYAKC----SAD------------------------GSVDDCRKVF 328

Query: 262 DRTTDTSSVMWNSMISGYISN-NEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGF 319
           DR  D S + W ++I+GY+ N N  TEA+ LF +M   G +E +  T +S   AC +L  
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
              GKQV G A K G+  +  VA                               N++I++
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVA-------------------------------NSVISM 417

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           +    R+EDA+  F ++  K+L+S+N+ + G  +N +  +A  L   + + +L +  F+ 
Sbjct: 418 FVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTF 477

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           AS++S  AN+ S+  GEQ+ ++V  +GL  +Q +  +L+  Y KCG I
Sbjct: 478 ASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/525 (21%), Positives = 223/525 (42%), Gaps = 117/525 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
           ++++C+    + VG+      +K G   S + +   L+ M+++  N   +A  +FD+M  
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF--------------------------NVMPQKND 103
            N  +W  MI   M++G   ++++ F                          N+   K  
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 104 FSWNM-----------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCYVRN-G 148
            SW +           L+  +AK    G +   R +F+ M   + ++W ++I  Y++N  
Sbjct: 292 HSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN 351

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A EA+ LF E+ +     ++ + F  ++   AC +L+    GKQ+       GL  +S 
Sbjct: 352 LATEAINLFSEMITQ--GHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +                AN V++M  + D               +M DA+R F+  ++ +
Sbjct: 410 V----------------ANSVISMFVKSD---------------RMEDAQRAFESLSEKN 438

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V +N+ + G   N    +A  L  ++    +   A T AS+LS  +++G +  G+Q+H 
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K+G+                      +C         +  + N +I++YS CG I+ 
Sbjct: 499 QVVKLGL----------------------SC---------NQPVCNALISMYSKCGSIDT 527

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F  M N+++ISW SMI G +++G  I  L+ F  M +  ++ ++ +  +++SAC++
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSH 587

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKCGFI 487
           +  +  G + F       +  D  I         +VD  C+ G +
Sbjct: 588 VGLVSEGWRHFN-----SMYEDHKIKPKMEHYACMVDLLCRAGLL 627



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 158/360 (43%), Gaps = 81/360 (22%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
           L+ +  +C    ++ +GKQLH   ++ G+++    +   L+ MY +C   G+  D   +F
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 65  DEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVM-----PQKNDFSW------------ 106
           D M   +  SW A+I G+MK      +++ LF+ M      + N F++            
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N +IS F K+  ++ A+  F  +  +N +++N+ +  
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG 448

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
             RN    +A +L  E+       L   AF  A+++   A++ ++  G+QIHS ++  GL
Sbjct: 449 TCRNLNFEQAFKLLSEITE---RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             +  + ++L+++Y KCG  ++A++V N M+                             
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFME----------------------------- 536

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + + + W SMI+G+  +      L  F++M   GV  +  T  ++LSACS +G +  G
Sbjct: 537 --NRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 138/318 (43%), Gaps = 67/318 (21%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+   ++++ +C        GK +H+ ++   ++ DSVL +SL++LY K GD   A  V 
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 231 NMMK---EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
             M+   + D    SA+++ Y N G+  DA +VF                         E
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVF------------------------VE 156

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALL 346
            L L       G++ +     +V+ ACS+  F+  G+   G   K G  + DV V  +L+
Sbjct: 157 FLEL-------GLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLI 209

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D + K G  S                              E+A  +F  M   ++++W  
Sbjct: 210 DMFVK-GENS-----------------------------FENAYKVFDKMSELNVVTWTL 239

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI    Q G P EA+  F +M       DKF+L+SV SACA + +L LG+Q+ +     G
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299

Query: 467 LDSDQIISTSLVDFYCKC 484
           L  D  +  SLVD Y KC
Sbjct: 300 LVDD--VECSLVDMYAKC 315



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 19/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL       SI  G+Q+H   +K G L+   P+ N L+ MY +CG+   A  +F+ M
Sbjct: 477 FASLLSGVANVGSIRKGEQIHSQVVKLG-LSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             RN  SW +MI GF K G   + L+ FN M ++    N+ ++  ++S  +  G +    
Sbjct: 536 ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGW 595

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M   + I      +  M+    R G   +A      +        Q D  +  T 
Sbjct: 596 RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP------FQADVLVWRTF 649

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC   +  E GK     IL   LD +       L N+Y   G +  + ++   MKE
Sbjct: 650 LGACRVHSNTELGKLAARKIL--ELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 184/370 (49%), Gaps = 20/370 (5%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y++CG  +DA   F+EMP RN  SW +++ G    G   ++ +LFNVMP++N  
Sbjct: 111 NAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVV 170

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN--- 161
           SWN ++ G  ++G+L+ AR +FN+MP ++ ++WN MI  Y  +    EA  LF  +    
Sbjct: 171 SWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRN 230

Query: 162 -------------SDLVERLQC--DAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
                        +  V+   C         V+   A +    +       +  N + ++
Sbjct: 231 VVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEAL--NSMSYN 288

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           +   +S++N Y + G    A  + + +   D    +++I+GY N G++  A  +F+   D
Sbjct: 289 TQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPD 348

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
             +V W  M+SG++ N    EA  LF +MR  GV    ST + +L A  ++ +L+ G+Q 
Sbjct: 349 RDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQF 408

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    K     D+I+ ++L+  Y+K G   DA  +FS++   D I  N+MI  +S  G  
Sbjct: 409 HCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLT 468

Query: 387 EDAKHIFRTM 396
            +A  +F  M
Sbjct: 469 SEALKVFEAM 478



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 187/433 (43%), Gaps = 58/433 (13%)

Query: 59  DALLLFDEMPRRNCFS----WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           +A  + DEMP R        W +++  F K G  +++  LF +MP++N  ++N ++SG+ 
Sbjct: 59  EARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYV 118

Query: 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           + G L  A   F +MP RN ++W S++      G   EA    +EL + + ER       
Sbjct: 119 QCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEA----RELFNVMPER------- 167

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
                                     N + ++S+L    V L  + G    A +V N M 
Sbjct: 168 --------------------------NVVSWNSML----VGLI-RSGQLEEARRVFNEMP 196

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                  + +I+GYA   +M +AR +FD   D + V W SMISGY       E   LF K
Sbjct: 197 VKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQK 256

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M    V+    +  +++   +  GF +       +  +          +++++ Y + G 
Sbjct: 257 MPERNVV----SWTAMIGGFAWNGFYKEALNSMSYNTQS--------CNSMINGYIRIGQ 304

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A  LF  + V D I   +MI  Y + G+I  A ++F  MP++  ++W  M+ G  QN
Sbjct: 305 LEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQN 364

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               EA  LF  M    +     + + ++ A   ++ L+ G Q    +     + D I+ 
Sbjct: 365 ELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQ 424

Query: 475 TSLVDFYCKCGFI 487
            SL+  Y KCG I
Sbjct: 425 NSLISMYAKCGEI 437



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 15/225 (6%)

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           +S I   +S     EA  +  +M   GVL+      S+LS  S  GF++  + +     +
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALF----E 100

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +    +V+  +A+L  Y + G  SDAC+ F E+   + +   +++   ++ GRI +A+ +
Sbjct: 101 IMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEAREL 160

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  MP ++++SWNSM+VGL ++G   EA  +F   N++ ++  + S   +I+  A  S +
Sbjct: 161 FNVMPERNVVSWNSMLVGLIRSGQLEEARRVF---NEMPVK-SQVSWNVMIAGYAEHSRM 216

Query: 453 ELGEQVFARVTIIGL-DSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           E      ARV   G+ D + +  TS++  YC+ G ++ + Y L Q
Sbjct: 217 EE-----ARVLFDGMGDRNVVTWTSMISGYCRAGNVQ-EGYCLFQ 255



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 16/182 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +      +  G+Q H   L K      L + N L+ MY +CG   DA  +F +M  R
Sbjct: 392 LLGAAGAMAYLDQGRQFHC-LLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISR 450

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN+MI GF   G   ++L++F  M       N  ++  ++S  + AG L     LF
Sbjct: 451 DLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELF 510

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M    AI      +  M++   R G   EA     +L        + D  I   ++G 
Sbjct: 511 DAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLP------FEPDLTIWGALLGV 564

Query: 182 CA 183
           C 
Sbjct: 565 CG 566


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 205/458 (44%), Gaps = 75/458 (16%)

Query: 45  NRLLQMYMRCGNP---TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
           N LL  Y    +P     A  LFDEMP+R+  +WN ++  + + G  +++ +LF+ MPQ+
Sbjct: 66  NTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQR 125

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N  SWN +++GF  AG++  A  +F+ MP +++ + ++M+  + +NG   EA  L  +  
Sbjct: 126 NAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRL 185

Query: 162 SDLVERLQCDAF-ILATVIGACADLA-------ALEYGKQIHSHILVNGLDFDSVLGSSL 213
           S        DA+  L    G     +        +  G+  H+ +   G + + V  +S+
Sbjct: 186 SVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSM 245

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND----------------- 256
           +  Y K GD  SA  + N M + D    + +ISGY     M +                 
Sbjct: 246 MICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWN 305

Query: 257 --------------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                         AR  FDR  +  ++ WN+MISGY  N     ++ LF KM   G + 
Sbjct: 306 LIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIP 365

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D  T +SVL+AC+S+  L  G Q+H    +   + D  +++AL+  YS+           
Sbjct: 366 DRHTFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSR----------- 413

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEAL 421
                               CG + DA+ IF+ M   K L+SWN++I     +G   +AL
Sbjct: 414 --------------------CGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKAL 453

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            LF  M +  +     +  S++SAC N   +  G  VF
Sbjct: 454 QLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVF 491



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 168/349 (48%), Gaps = 38/349 (10%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  G+  H    +KG   + +   N ++  Y++ G+   A  LF+EMP ++  SWN MI 
Sbjct: 220 IPKGQYQHNMLKRKGFERNVVSW-NSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMIS 278

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G+ +    ++S +LF  MP  +  SWN++I GF + GE + AR  F+ MP R  I+WN+M
Sbjct: 279 GYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTM 338

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHIL 199
           I  Y +NG    +V+LF    S ++E  +  D    ++V+ ACA +  L  G QIH  ++
Sbjct: 339 ISGYEKNGNYISSVKLF----SKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIH-QLV 393

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
                 D+ + ++L+ +Y +CG  N A  +   M    D                     
Sbjct: 394 EKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDL-------------------- 433

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                     V WN++I  Y  +   T+AL LF +MRR  V+    T  S+LSAC + G 
Sbjct: 434 ----------VSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGL 483

Query: 320 LEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +  G+ V      + G++  +   +AL++   + G   DA ++ + + +
Sbjct: 484 VSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPM 532



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 52/248 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N ++Q +M+ G    A   FD MP R   SWN MI G+ K G+   S++LF+ M      
Sbjct: 305 NLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEI 364

Query: 99  PQKNDFSW--------------------------------NMLISGFAKAGELKTARTLF 126
           P ++ FS                                 N LI+ +++ G L  A  +F
Sbjct: 365 PDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIF 424

Query: 127 NDM-PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
             M  +++ ++WN++I CY  +G A +A++LFKE+      ++        +++ AC + 
Sbjct: 425 KQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRR---AKVMPTHITFVSLLSACVNA 481

Query: 186 AALEYGKQI-----HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDF 239
             +  G+ +     H + +V  ++  +    +LVNL G+ G  + A +V+N M   PD  
Sbjct: 482 GLVSEGRMVFDTMVHEYGIVARIEHYA----ALVNLIGRHGQLDDALEVINSMPMAPDRS 537

Query: 240 CLSALISG 247
              A +  
Sbjct: 538 VWGAFLGA 545



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 41/248 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L +C +   + +G Q+H   ++K  +  T  I+N L+ MY RCG   DA  +F +M
Sbjct: 370 FSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTA-ISNALITMYSRCGALNDAEAIFKQM 427

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKAGELK 120
             +++  SWNA+I  +   G   K+LQLF       VMP    F    L+S    AG + 
Sbjct: 428 HTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFV--SLLSACVNAGLVS 485

Query: 121 TARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
             R +F+ M     I      + ++++   R+G   +A+ +   +       +  D  + 
Sbjct: 486 EGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMP------MAPDRSVW 539

Query: 176 ATVIGAC--------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSA 226
              +GAC        A +AA E          ++ ++ DS     L+ NL+   G + SA
Sbjct: 540 GAFLGACTAKKNEPLAQMAAKE----------LSTINPDSSAPYVLIHNLHAHEGKWGSA 589

Query: 227 NQVLNMMK 234
             V   M+
Sbjct: 590 AVVREEME 597


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 205/458 (44%), Gaps = 75/458 (16%)

Query: 45  NRLLQMYMRCGNP---TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
           N LL  Y    +P     A  LFDEMP+R+  +WN ++  + + G  +++ +LF+ MPQ+
Sbjct: 102 NTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQR 161

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N  SWN +++GF  AG++  A  +F+ MP +++ + ++M+  + +NG   EA  L  +  
Sbjct: 162 NAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRL 221

Query: 162 SDLVERLQCDAF-ILATVIGACADLA-------ALEYGKQIHSHILVNGLDFDSVLGSSL 213
           S        DA+  L    G     +        +  G+  H+ +   G + + V  +S+
Sbjct: 222 SVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSM 281

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND----------------- 256
           +  Y K GD  SA  + N M + D    + +ISGY     M +                 
Sbjct: 282 MICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWN 341

Query: 257 --------------ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                         AR  FDR  +  ++ WN+MISGY  N     ++ LF KM   G + 
Sbjct: 342 LIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIP 401

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D  T +SVL+AC+S+  L  G Q+H    +   + D  +++AL+  YS+           
Sbjct: 402 DRHTFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAISNALITMYSR----------- 449

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEAL 421
                               CG + DA+ IF+ M   K L+SWN++I     +G   +AL
Sbjct: 450 --------------------CGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKAL 489

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            LF  M +  +     +  S++SAC N   +  G  VF
Sbjct: 490 QLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVF 527



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 168/349 (48%), Gaps = 38/349 (10%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  G+  H    +KG   + +   N ++  Y++ G+   A  LF+EMP ++  SWN MI 
Sbjct: 256 IPKGQYQHNMLKRKGFERNVVSW-NSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMIS 314

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G+ +    ++S +LF  MP  +  SWN++I GF + GE + AR  F+ MP R  I+WN+M
Sbjct: 315 GYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTM 374

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHIL 199
           I  Y +NG    +V+LF    S ++E  +  D    ++V+ ACA +  L  G QIH  ++
Sbjct: 375 ISGYEKNGNYISSVKLF----SKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIH-QLV 429

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
                 D+ + ++L+ +Y +CG  N A  +   M    D                     
Sbjct: 430 EKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDL-------------------- 469

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                     V WN++I  Y  +   T+AL LF +MRR  V+    T  S+LSAC + G 
Sbjct: 470 ----------VSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGL 519

Query: 320 LEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +  G+ V      + G++  +   +AL++   + G   DA ++ + + +
Sbjct: 520 VSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPM 568



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 52/248 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N ++Q +M+ G    A   FD MP R   SWN MI G+ K G+   S++LF+ M      
Sbjct: 341 NLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEI 400

Query: 99  PQKNDFSW--------------------------------NMLISGFAKAGELKTARTLF 126
           P ++ FS                                 N LI+ +++ G L  A  +F
Sbjct: 401 PDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIF 460

Query: 127 NDM-PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
             M  +++ ++WN++I CY  +G A +A++LFKE+      ++        +++ AC + 
Sbjct: 461 KQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRR---AKVMPTHITFVSLLSACVNA 517

Query: 186 AALEYGKQI-----HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDF 239
             +  G+ +     H + +V  ++      ++LVNL G+ G  + A +V+N M   PD  
Sbjct: 518 GLVSEGRMVFDTMVHEYGIVARIEH----YAALVNLIGRHGQLDDALEVINSMPMAPDRS 573

Query: 240 CLSALISG 247
              A +  
Sbjct: 574 VWGAFLGA 581



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 41/245 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PR 69
           +L +C +   + +G Q+H   ++K  +  T  I+N L+ MY RCG   DA  +F +M  +
Sbjct: 409 VLAACASIPMLGLGAQIH-QLVEKSFVPDTA-ISNALITMYSRCGALNDAEAIFKQMHTK 466

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKAGELKTAR 123
           ++  SWNA+I  +   G   K+LQLF       VMP    F    L+S    AG +   R
Sbjct: 467 KDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFV--SLLSACVNAGLVSEGR 524

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +F+ M     I      + ++++   R+G   +A+ +   +       +  D  +    
Sbjct: 525 MVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMP------MAPDRSVWGAF 578

Query: 179 IGAC--------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQV 229
           +GAC        A +AA E          ++ ++ DS     L+ NL+   G + SA  V
Sbjct: 579 LGACTAKKNEPLAQMAAKE----------LSTINPDSSAPYVLIHNLHAHEGKWGSAAVV 628

Query: 230 LNMMK 234
              M+
Sbjct: 629 REEME 633


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 222/510 (43%), Gaps = 106/510 (20%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIE 80
            +G Q+H   +  G   S + +AN L+ MY   G   DA  +FDE    RN  SWN ++ 
Sbjct: 117 QLGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMS 175

Query: 81  GFMKLGHKEKSLQLFNVM------P---------------------------------QK 101
            ++K      ++Q+F  M      P                                 +K
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEK 235

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           + F+ N L+  + K G +  A  +F  MP  + ++WN++I   V NG    A+ L  ++ 
Sbjct: 236 DVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 295

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           S     L  + F+L++++ ACA   A + G+QIH  ++    D D  +G  LV++Y K  
Sbjct: 296 S---SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAK-- 350

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                N  L+                        DA +VFD  +    ++WN++ISG   
Sbjct: 351 -----NHFLD------------------------DAMKVFDWMSHRDLILWNALISGCSH 381

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
                EA  +F+ +R+ G+  + +TLA+VL + +SL      +QVH  A K+G I D  V
Sbjct: 382 GGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHV 441

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            + L+D+Y K    SDA ++F E    D I + +MIT  S C   E              
Sbjct: 442 VNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEG------------- 488

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
                             A+ LF  M +  L  D F L+S+++ACA++S+ E G+QV A 
Sbjct: 489 ------------------AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +      SD     +LV  Y KCG I+  E
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAE 560



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 213/498 (42%), Gaps = 105/498 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G  LH + LK G L S   + N L+  Y +C  P  A  +FDE+P     SW++++  + 
Sbjct: 23  GAHLHANLLKSGFLAS---LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYS 79

Query: 84  KLGHKEKSLQLFNVMPQK----NDFSW--------------------------------N 107
             G    ++Q F+ M  +    N+F+                                 N
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVAN 139

Query: 108 MLISGFAKAGELKTARTLFNDM-PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
            L++ +   G +  AR +F++    RNA++WN ++  YV+N    +A+++F E+   +  
Sbjct: 140 ALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM---VWS 196

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +Q   F  + V+ AC     ++ G+Q+H+                              
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQVHA------------------------------ 226

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V+ M  E D F  +AL+  Y   G+++ A  +F++  D+  V WN++ISG + N  D 
Sbjct: 227 -MVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDH 285

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            A+ L  +M+ +G++ +   L+S+L AC+  G  + G+Q+HG   K     D  +   L+
Sbjct: 286 RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 345

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y+K     DA K+F  +   D IL N +I+                            
Sbjct: 346 DMYAKNHFLDDAMKVFDWMSHRDLILWNALIS---------------------------- 377

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
              G S  G   EA  +F  + K  L +++ +LA+V+ + A++ +     QV A    IG
Sbjct: 378 ---GCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIG 434

Query: 467 LDSDQIISTSLVDFYCKC 484
              D  +   L+D Y KC
Sbjct: 435 FIFDAHVVNGLIDSYWKC 452



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 224/521 (42%), Gaps = 108/521 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    +I  G+Q+H   ++ G        AN L+ MY++ G    A ++F++MP  
Sbjct: 208 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVF-TANALVDMYVKMGRVDIASVIFEKMPDS 266

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ------------------------ 100
           +  SWNA+I G +  GH  ++++L        ++P                         
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 326

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     +D+    L+  +AK   L  A  +F+ M  R+ I WN++I      G   
Sbjct: 327 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 386

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  +F  L     E L  +   LA V+ + A L A    +Q+H+     G  FD+ + +
Sbjct: 387 EAFSIFYGLRK---EGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 443

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
            L++ Y KC                   CLS             DA RVF+  +    + 
Sbjct: 444 GLIDSYWKCS------------------CLS-------------DAIRVFEECSSGDIIA 472

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
             SMI+     +    A+ LF +M R G+  D   L+S+L+AC+SL   E GKQVH H  
Sbjct: 473 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K   + D    +AL+ TY+K                               CG IEDA+ 
Sbjct: 533 KRQFMSDAFAGNALVYTYAK-------------------------------CGSIEDAEL 561

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F ++P + ++SW++MI GL+Q+G    AL+LF  M    +  +  ++ SV+ AC +   
Sbjct: 562 AFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGL 621

Query: 452 LELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++  ++ F  +  + G+D  +   + ++D   + G  K+D+
Sbjct: 622 VDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAG--KLDD 660



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 180/445 (40%), Gaps = 104/445 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C    +  +G+Q+H  F+ K   +S   I   L+ MY +     DA+ +FD M
Sbjct: 306 LSSILKACAGAGAFDLGRQIH-GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM 364

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-------------------------------- 95
             R+   WNA+I G    G  +++  +F                                
Sbjct: 365 SHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATR 424

Query: 96  --NVMPQKNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
             + + +K  F +     N LI  + K   L  A  +F +    + IA  SMI    +  
Sbjct: 425 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 484

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A++LF E+   L + L+ D F+L++++ ACA L+A E GKQ+H+H++         
Sbjct: 485 HGEGAIKLFMEM---LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI--------- 532

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                              Q ++     D F  +AL+  YA CG + DA   F    +  
Sbjct: 533 -----------------KRQFMS-----DAFAGNALVYTYAKCGSIEDAELAFSSLPERG 570

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W++MI G   +     AL LF +M   G+  +  T+ SVL AC+  G ++  K+   
Sbjct: 571 VVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN 630

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              ++  ID              R     +C                MI +    G+++D
Sbjct: 631 SMKEMFGID--------------RTEEHYSC----------------MIDLLGRAGKLDD 660

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQ 413
           A  +  +MP ++  S    ++G S+
Sbjct: 661 AMELVNSMPFQANASVWGALLGASR 685



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 17/239 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+  ++      N L+  Y +CG+  DA L F  +
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKCGSIEDAELAFSSL 566

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P R   SW+AMI G  + GH +++L+LF  M  +    N  +   ++     AG +  A+
Sbjct: 567 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAK 626

Query: 124 TLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M       R    ++ MI    R G   +A+ L   +        Q +A +   +
Sbjct: 627 RYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP------FQANASVWGAL 680

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           +GA       E GK     + +   +  S     L N Y   G +N   +V  +MK+ +
Sbjct: 681 LGASRVHKDPELGKLAAEKLFILEPE-KSGTHVLLANTYASSGMWNEVAKVRKLMKDSN 738



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           L N +I+ YS C R   A+ +F  +P+   +SW+S++   S NG P  A+  F  M    
Sbjct: 39  LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG 98

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +  ++F+L  V+     +   +LG QV A     G  SD  ++ +LV  Y   GF+
Sbjct: 99  VCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFM 151


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 220/496 (44%), Gaps = 108/496 (21%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           I  L  +L  C     + +G ++H   +K G L+  + + N L+ MY +CG  T+A +LF
Sbjct: 134 IATLVTVLPVCAREVDVQMGIRIHGLAVKLG-LSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMP-------- 99
           D+  R+N  SWN MI G    G+  ++  LF                 N++P        
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 100 ---------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                          Q ++   N  ++ +AK G L  A  +F  M  +   +WN++I   
Sbjct: 253 RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGC 312

Query: 145 VRNGFAREAVRLFKELN-SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
            +NG  R+A+ L+ ++  S LV     D F + +++ A A L +L YGK++H  +L +GL
Sbjct: 313 AQNGDPRKALNLYIQMTYSGLVP----DWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGL 368

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           + DS +G SL++LY                                +CG+ + AR +FD 
Sbjct: 369 EIDSFIGISLLSLY-------------------------------IHCGESSSARLLFDG 397

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             + SSV WN+MISGY  N    +AL+LF K+  +G       + SVL ACS    L  G
Sbjct: 398 MEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG 457

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K+ H +A K  +++DV VA + +D Y+K G   ++  +F  LK  D    N +I  Y   
Sbjct: 458 KETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVH 517

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G  E                               E+++LF  M K+    D F+   ++
Sbjct: 518 GDGE-------------------------------ESIELFERMRKVGQMPDGFTFIGIL 546

Query: 444 SACANISSLELGEQVF 459
           + C++   +E G + F
Sbjct: 547 TVCSHAGLVEEGLKYF 562



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 225/519 (43%), Gaps = 106/519 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C       +G+ +H   +K G+L     + N L+ MY + G    A+ +F  MP R
Sbjct: 37  VIKACTGSLDRGLGEVIHGMVIKMGLLLDVF-VGNALIAMYGKFGFVDAAVKVFHYMPVR 95

Query: 71  NCFSWNAMIEGFMKLGHK-------------EKSL-----QLFNVMP---QKNDFSWNML 109
           N  SWN++I GF + G               E+ L      L  V+P   ++ D    + 
Sbjct: 96  NLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIR 155

Query: 110 ISGFA--------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
           I G A                    K G L  A+ LF+   R+NA++WN+MI      G+
Sbjct: 156 IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGY 215

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA  LF+E+   + E ++ +   +  ++ AC +++ L   K++H + + +G  +D ++
Sbjct: 216 IFEAFNLFREMQ--MQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELV 273

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            +  V                               + YA CG +  A RVF      + 
Sbjct: 274 ANGFV-------------------------------AAYAKCGMLICAERVFYSMETKTV 302

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN++I G   N +  +AL L+ +M  +G++ D  T+ S+L A + L  L +GK+VHG 
Sbjct: 303 NSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGF 362

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+  D  +  +LL                               ++Y  CG    A
Sbjct: 363 VLRHGLEIDSFIGISLL-------------------------------SLYIHCGESSSA 391

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           + +F  M  KS +SWN+MI G SQNG P +AL LF  +     +    ++ SV+ AC+  
Sbjct: 392 RLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQ 451

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           S+L LG++         L  D  ++ S +D Y K G IK
Sbjct: 452 SALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIK 490



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 181/418 (43%), Gaps = 76/418 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +   K+LH + ++ G     L +AN  +  Y +CG    A  +F  M  +
Sbjct: 242 ILPACLEISQLRSLKELHGYSIRHGFQYDEL-VANGFVAAYAKCGMLICAERVFYSMETK 300

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
              SWNA+I G  + G   K+L L+       ++P                         
Sbjct: 301 TVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVH 360

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + + F    L+S +   GE  +AR LF+ M  +++++WN+MI  Y +NG   
Sbjct: 361 GFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPE 420

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF++L SD     Q     + +V+GAC+  +AL  GK+ H + L   L  D  +  
Sbjct: 421 DALILFRKLVSD---GFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVAC 477

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           S +++Y K G                  C+              ++R VFD   +     
Sbjct: 478 STIDMYAKSG------------------CI-------------KESRSVFDGLKNKDLAS 506

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++I+ Y  + +  E++ LF +MR+ G + D  T   +L+ CS  G +E G +      
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQ 566

Query: 332 KVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIE 387
               I+  +   A ++D   + G   DA +L  E+ +  D+ + +++++   + G +E
Sbjct: 567 NFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELE 624



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 69/356 (19%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           RN    +A+ +F +L +D       D F    VI AC        G+ IH  ++  GL  
Sbjct: 7   RNELYSDAIDMFVKLITD--TEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLL 64

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  +G++L+ +YGK G  ++A +V + M       +  L+S                   
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMP------VRNLVS------------------- 99

Query: 266 DTSSVMWNSMISGYISN--NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 WNS+ISG+  N  ++D   +L+       G+L D +TL +VL  C+    ++ G
Sbjct: 100 ------WNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMG 153

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
            ++HG A K+G+ +DV V ++L+D YSK G  ++A  LF +    + +  NTMI      
Sbjct: 154 IRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIG----- 208

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASV 442
                                     GL   G   EA +LF  M  + D+ +++ ++ ++
Sbjct: 209 --------------------------GLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNI 242

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE--YYLMQ 496
           + AC  IS L   +++       G   D++++   V  Y KCG +   E  +Y M+
Sbjct: 243 LPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSME 298



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 116/235 (49%), Gaps = 19/235 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C+   ++ +GK+ H + LK  +L   + +A   + MY + G   ++  +FD +  +
Sbjct: 444 VLGACSQQSALRLGKETHCYALK-ALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNK 502

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWNA+I  +   G  E+S++LF  M +     + F++  +++  + AG ++     F
Sbjct: 503 DLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYF 562

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N+M   + I      +  ++    R G   +A+RL  E+        Q D+ + ++++  
Sbjct: 563 NEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPE------QPDSRVWSSLLSF 616

Query: 182 CADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C +   LE G+ +   +L +   + ++ +  SL NLY   G ++   +V  M+K+
Sbjct: 617 CRNFGELEIGQIVAEKLLELEPKNVENYV--SLSNLYAGSGRWDDVRRVRQMIKD 669



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 407 MIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           M V + +N    +A+D+F  +    +   D F+   VI AC       LGE +   V  +
Sbjct: 1   MHVAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKM 60

Query: 466 GLDSDQIISTSLVDFYCKCGFI 487
           GL  D  +  +L+  Y K GF+
Sbjct: 61  GLLLDVFVGNALIAMYGKFGFV 82


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 194/422 (45%), Gaps = 41/422 (9%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y R G   +A  LFDEMP RN  SWN MI GF  +G   K+L +F  MP K+  S 
Sbjct: 138 LLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASL 197

Query: 107 NMLISGFAKAGELKTARTLFND----MPRRNAI-AWNSMIHCYVRNGFAREAVRLFKELN 161
           + ++SGF + G L  A  L       M    A+ A+N++I  Y + G   +A RLF  + 
Sbjct: 198 SAMVSGFIRNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIP 257

Query: 162 SDLVERLQCDAFILATVIGACADLAA--LEYGKQIHSHILVNGLDF-DSVLGSSLVNLYG 218
               +       +    + +   +    +  G    +  L + +   D V  ++++  Y 
Sbjct: 258 KTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYT 317

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           +  +   A ++   + +PD    + +I G+   G +  AR  FDR  + S++ WN+MISG
Sbjct: 318 QASEMEEAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISG 377

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y  N +    + LF +M   G   D  TL+SVL+AC+SL  L  G Q+H           
Sbjct: 378 YEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACASLAMLRLGAQLH----------Q 427

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-P 397
           +I  S L DT +                       N ++T+YS CG +  AK IF  M  
Sbjct: 428 LIEKSFLPDTATN----------------------NALMTMYSRCGELISAKAIFGHMHT 465

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            + ++SWN++I G  Q G+  EAL LF  M    +     +  S++SAC N   +  G  
Sbjct: 466 QRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSACGNAGLVSEGRV 525

Query: 458 VF 459
           VF
Sbjct: 526 VF 527



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 209/468 (44%), Gaps = 83/468 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           NR L   +R G  + A  LFD +P R+  +WN+++    +      +   F+ MP ++  
Sbjct: 40  NRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPVRDII 99

Query: 105 SWNMLISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL- 160
           SWN L+S +A++    +L  AR LF +MP+R+A++W++++  Y R G   EA RLF E+ 
Sbjct: 100 SWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMP 159

Query: 161 --NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
             N+     +    F +  +  A    AA+               D DS   S++V+ + 
Sbjct: 160 HRNASSWNTMITGFFAVGQMRKALNVFAAMP--------------DKDSASLSAMVSGFI 205

Query: 219 KCGDFNSANQ-------VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-- 269
           + G  + A+        V++M K    F  + LI+ Y   G++ DARR+F     T +  
Sbjct: 206 RNGRLHEADDLLTKRLTVMDMDKAVGAF--NTLIAAYGQTGRVTDARRLFSMIPKTQNQH 263

Query: 270 ------------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
                       V WNSM+  YI   +   A  LF +M                      
Sbjct: 264 KGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHK------------------- 304

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
                               D++  + ++  Y++     +A KLF E+   D +  N MI
Sbjct: 305 --------------------DLVSWNTMIAGYTQASEMEEAEKLFWEVPDPDAVTWNLMI 344

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
             ++  G +E A+  F  MP +S I+WN+MI G  QN      + LF  M ++  R D  
Sbjct: 345 RGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQRMLEVGERPDHH 404

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +L+SV++ACA+++ L LG Q+   +    L  D   + +L+  Y +CG
Sbjct: 405 TLSSVLAACASLAMLRLGAQLHQLIEKSFL-PDTATNNALMTMYSRCG 451



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 164/337 (48%), Gaps = 37/337 (10%)

Query: 33  KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92
           K+ +    +   N ++  Y+R G+   A  LFDEMP ++  SWN MI G+ +    E++ 
Sbjct: 267 KRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEMEEAE 326

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF  +P  +  +WN++I GF + G+++ AR  F+ MP R+ I WN+MI  Y +N     
Sbjct: 327 KLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDS 386

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
            ++LF+ +  ++ ER   D   L++V+ ACA LA L  G Q+H  I  + L  D+   ++
Sbjct: 387 TIKLFQRM-LEVGER--PDHHTLSSVLAACASLAMLRLGAQLHQLIEKSFLP-DTATNNA 442

Query: 213 LVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           L+ +Y +CG+  SA  +  +M  + D    +ALI GY   G                   
Sbjct: 443 LMTMYSRCGELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNA----------------- 485

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHA 330
                         TEAL LF +MR   V+    T  S+LSAC + G +  G+ V H   
Sbjct: 486 --------------TEALRLFEEMRSAKVMPTHITFISLLSACGNAGLVSEGRVVFHTMV 531

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
              G+   V   +AL++   + G   DA +L   + +
Sbjct: 532 HDYGLAASVEHYAALVNLIGRHGQLEDALELIKSMPI 568


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 219/517 (42%), Gaps = 105/517 (20%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           ++ +  LL       S+  G  +H H LK G+        N LL  Y +C  P  A  +F
Sbjct: 4   LETIGPLLTRYAATQSLLQGAHIHAHLLKSGLFAV---FRNHLLSFYSKCRLPGSARRVF 60

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------VMP------------- 99
           DE+P     SW++++  +        +L  F             V+P             
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGT 120

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRN 147
                        + F  N L++ +   G +  AR +F++    RN ++WN ++  YV+N
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
                AV++F E+   +   +Q + F  + V+ AC     LE G+++H+ ++  G D   
Sbjct: 181 DRCSHAVKVFGEM---VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYD--- 234

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                        D F  +AL+  Y+  G +  A  VF +  +T
Sbjct: 235 ----------------------------KDVFTANALVDMYSKLGDIRMAAVVFGKVPET 266

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V WN+ ISG + +  D  AL L  +M+ +G++ +  TL+S+L AC+  G    G+Q+H
Sbjct: 267 DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIH 326

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   K     D  +A  L+D Y+K G+                               ++
Sbjct: 327 GFMVKANADSDNYIAFGLVDMYAKHGL-------------------------------LD 355

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DAK +F  +P + L+ WN++I G S      EAL LFC M K    +++ +LA+V+ + A
Sbjct: 356 DAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTA 415

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ++ ++    QV A    +G  SD  +   L+D Y KC
Sbjct: 416 SLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKC 452



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 137/505 (27%), Positives = 223/505 (44%), Gaps = 106/505 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
           G QLH   +  G L   + +AN L+ MY   G   +A ++FDE    RN  SWN ++  +
Sbjct: 119 GTQLHALAMATG-LGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY 177

Query: 83  MKLGHKEKSLQLFNVMP----QKNDFSW-------------------------------- 106
           +K      ++++F  M     Q N+F +                                
Sbjct: 178 VKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 107 ---NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
              N L+  ++K G+++ A  +F  +P  + ++WN+ I   V +G  + A+ L  ++ S 
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKS- 296

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
               L  + F L++++ ACA   A   G+QIH  ++    D D+ +   LV++       
Sbjct: 297 --SGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDM------- 347

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                   YA  G ++DA++VFD       V+WN++ISG     
Sbjct: 348 ------------------------YAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGA 383

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +  EAL LF +MR+ G   + +TLA+VL + +SL  +   +QVH  A K+G + D  V +
Sbjct: 384 QHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN 443

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
            L+D+Y K    + A ++F +   YD I   +MIT  S C   ED               
Sbjct: 444 GLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGED--------------- 488

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
                           A+ LF  M +  L  D F L+S+++ACA++S+ E G+QV A + 
Sbjct: 489 ----------------AIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
                SD     +LV  Y KCG I+
Sbjct: 533 KRQFMSDVFAGNALVYTYAKCGSIE 557



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/521 (24%), Positives = 224/521 (42%), Gaps = 108/521 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C     +  G+++H   ++ G  +  +  AN L+ MY + G+   A ++F ++P  
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVIRTG-YDKDVFTANALVDMYSKLGDIRMAAVVFGKVPET 266

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQL----------------------------FNVMPQKN 102
           +  SWNA I G +  GH + +L+L                            FN+  Q +
Sbjct: 267 DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIH 326

Query: 103 DFSWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
            F               L+  +AK G L  A+ +F+ +P+R+ + WN++I          
Sbjct: 327 GFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHA 386

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF  +     E    +   LA V+ + A L A+   +Q+H+  L   L F S    
Sbjct: 387 EALSLFCRMRK---EGFDVNRTTLAAVLKSTASLEAISDTRQVHA--LAEKLGFLS---- 437

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                    D   ++ LI  Y  C  +N A RVF++      + 
Sbjct: 438 -------------------------DSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIA 472

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           + SMI+     +   +A+ LF +M R G+  D   L+S+L+AC+SL   E GKQVH H  
Sbjct: 473 FTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K   + DV   +AL+ TY+K                               CG IEDA  
Sbjct: 533 KRQFMSDVFAGNALVYTYAK-------------------------------CGSIEDADL 561

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F  +P K ++SW++MI GL+Q+G    ALD+F  M    +  +  ++ SV+ AC +   
Sbjct: 562 AFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGL 621

Query: 452 LELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++  ++ F  +  + G++  +     ++D   + G  K+D+
Sbjct: 622 VDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAG--KLDD 660



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 35/247 (14%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+S Y+ C     ARRVFD   D   V W+S+++ Y +N    +AL  F  MR   V  +
Sbjct: 43  LLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCN 102

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
              L  VL      GF   G Q+H  A   G+  D+ VA+AL                  
Sbjct: 103 EFVLPVVLKCAPDAGF---GTQLHALAMATGLGGDIFVANAL------------------ 141

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALD 422
                        + +Y   G +++A+ +F      ++ +SWN ++    +N     A+ 
Sbjct: 142 -------------VAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVK 188

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           +F  M    ++ ++F  + V++AC     LE G +V A V   G D D   + +LVD Y 
Sbjct: 189 VFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYS 248

Query: 483 KCGFIKM 489
           K G I+M
Sbjct: 249 KLGDIRM 255



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+  ++      N L+  Y +CG+  DA L F  +
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFA-GNALVYTYAKCGSIEDADLAFSGL 566

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P +   SW+AMI G  + GH +++L +F+ M  +    N  +   ++     AG +  A+
Sbjct: 567 PEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAK 626

Query: 124 TLFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M       R    +  MI    R G   +A+ L   +        Q +A +   +
Sbjct: 627 RYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMP------FQTNAAVWGAL 680

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           + A       E G+     + +   +  S     L N Y   G ++   +V  +MK+
Sbjct: 681 LAASRVHRDPELGRLAAEKLFILEPE-KSGTHVLLANTYASAGMWDDVAKVRKLMKD 736


>gi|218193846|gb|EEC76273.1| hypothetical protein OsI_13747 [Oryza sativa Indica Group]
          Length = 602

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 224/491 (45%), Gaps = 105/491 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC    +I +G+ +H      G L+  + + + L++MY   G   DA  +FD M  R
Sbjct: 152 VVKSCAALGAIALGRLVHRTARTLG-LDGDMFVGSALIKMYANGGLLWDARQVFDGMAER 210

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-------------------NVMPQKNDFSW----- 106
           +C  WN M++G++K G    +++LF                   +V   ++D  +     
Sbjct: 211 DCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLH 270

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+S +AK   L     LF  MPR + + WN MI   V+NGF  
Sbjct: 271 TLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVD 330

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ LF ++       ++ D+  L +++ A  DL     GK++H +I+ N +  D  L S
Sbjct: 331 QALLLFCDMQK---SGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV++                               Y  C  +  A+ V+D +     V+
Sbjct: 388 ALVDI-------------------------------YFKCRAVRMAQSVYDSSKAIDVVI 416

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
            ++MISGY+ N    EA+ +F  +   G+  +A  +ASVL AC+S+  ++ G+++H +A 
Sbjct: 417 GSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYAL 476

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K        V SAL+D Y+K                               CGR++ + +
Sbjct: 477 KNAYEGRCYVESALMDMYAK-------------------------------CGRLDLSHY 505

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           IF  +  K  ++WNSMI   +QNG P EAL+LF  M    ++    +++SV+SACA++ +
Sbjct: 506 IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPA 565

Query: 452 LELGEQVFARV 462
           +  G+++   V
Sbjct: 566 IYYGKEIHGVV 576



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/529 (23%), Positives = 225/529 (42%), Gaps = 109/529 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C +   + +G Q+H   +  G+  +   +  RL+ MY+      DA+ +F  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 68  PRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVM--------PQKNDFSW---------- 106
           PR        WN +I G    G    +L  +  M        P  + F +          
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  + LI  +A  G L  AR +F+ M  R+ + WN M+  
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           YV+ G    AV LF ++ +   E    +   LA  +   A  + L +G Q+H+  +  GL
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEP---NFATLACFLSVSATESDLFFGVQLHTLAVKYGL 278

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           + +  + ++LV++Y K                               C  ++D  ++F  
Sbjct: 279 ESEVAVANTLVSMYAK-------------------------------CKCLDDGWKLFGL 307

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 V WN MISG + N    +ALLLF  M+++G+  D+ TL S+L A + L     G
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           K++HG+  +  V  DV + SAL+D Y K      A  ++   K  D ++ +TMI+ Y   
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGY--- 424

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
                                  ++ G+SQ     EA+ +F  + +  +R +  ++ASV+
Sbjct: 425 -----------------------VLNGMSQ-----EAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            ACA++++++LG+++ +       +    + ++L+D Y KCG + +  Y
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHY 505



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 177/371 (47%), Gaps = 74/371 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L    T   +  G QLH   +K G L S + +AN L+ MY +C    D   LF  M
Sbjct: 250 LACFLSVSATESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGWKLFGLM 308

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKND-------- 103
           PR +  +WN MI G ++ G  +++L LF                +++P   D        
Sbjct: 309 PRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGK 368

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          F  + L+  + K   ++ A+++++     + +  ++MI  YV NG
Sbjct: 369 ELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNG 428

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            ++EAV++F+ L   L + ++ +A  +A+V+ ACA +AA++ G+++HS+ L N  +    
Sbjct: 429 MSQEAVKMFRYL---LEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYE---- 481

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                    G+C                  +  SAL+  YA CG+++ +  +F + +   
Sbjct: 482 ---------GRC------------------YVESALMDMYAKCGRLDLSHYIFSKISAKD 514

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSMIS +  N E  EAL LF +M   GV     T++SVLSAC+SL  + +GK++HG
Sbjct: 515 EVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHG 574

Query: 329 HACKVGVIDDV 339
              K  +  D+
Sbjct: 575 VVIKGPIRADL 585


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 128/540 (23%), Positives = 236/540 (43%), Gaps = 95/540 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L++C+      +GK +H   ++K +  S + + N L+  Y  CG+   +  +F  M
Sbjct: 186 VPTILKACSAMLLXRIGKMVHGFVIRKSV-ESDVFVGNALIHFYSNCGDLGSSRSVFHSM 244

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             R+  SW A+I  +M+ G  +++  +F++M     + +  SW+ L+SGFA+ GE+  A 
Sbjct: 245 QERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLAL 304

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
               +MP R       +WN +I   V+NG+  +A+ +F  +   L      +   +A+++
Sbjct: 305 ETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRM---LWYPEDPNIITIASIL 361

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            AC  L AL  GK IH     +G+  +  +  S++++Y KCG ++ A +V    +  +  
Sbjct: 362 PACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTA 421

Query: 240 CLSALISGYANCGKMNDA----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
             + +I+ Y N GK+ DA    R +         + +N+++SG+  N   T+A  L  +M
Sbjct: 422 MWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEM 481

Query: 296 RRNG-----------------------------VLEDAS------------------TLA 308
            + G                             +++  S                  T+ 
Sbjct: 482 VQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITIT 541

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
             L AC+ L     GK++HG+  + G   ++ V+SAL+D Y+K                 
Sbjct: 542 GALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAK----------------- 584

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         C  ++ A  +F  +  ++ +SWN+++ G   N  P EAL LF  M 
Sbjct: 585 --------------CHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEML 630

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCGFI 487
              L+    +   +  AC +I+++  G  +        LD     I ++L+D Y KCG I
Sbjct: 631 GEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSI 690



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 230/506 (45%), Gaps = 90/506 (17%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
           D  I  +A +L +C    ++ +GK +H    K GI+ +   +   ++ MY +CG+   A 
Sbjct: 351 DPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVY-VEGSVIDMYSKCGSYDYAE 409

Query: 62  LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-----SWNMLISGFAKA 116
            +F +   +N   WN MI  ++  G  E +L L   M QK+ +     ++N ++SG A+ 
Sbjct: 410 KVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSM-QKDGWKPDVITYNTILSGHARN 468

Query: 117 GELKTARTLFNDMP----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD--------- 163
           G    A  L ++M     + N +++N +I  + ++G + EA+++F+ + S          
Sbjct: 469 GLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEV 528

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L   ++ +   +   + ACADL     GK+IH + L NG + +  + S+LV++Y KC D 
Sbjct: 529 LNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDM 588

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           +SAN+                               VF R    ++V WN++++GYI+N 
Sbjct: 589 DSANK-------------------------------VFFRIDGRNTVSWNALMAGYINNK 617

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA--CKVGVIDDVIV 341
           +  EAL LF +M   G+   + T   +  AC  +  +  G+ +HG+A  C++  + + I 
Sbjct: 618 QPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAI- 676

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            SAL+D Y+K G   DA  +F      D  L N MI+ +S                    
Sbjct: 677 XSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFS-------------------- 716

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
                 + G+++N     A  +F  M  L +  D  +  S++SACA    +E G + F  
Sbjct: 717 ------VHGMARN-----AFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNS 765

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFI 487
           + I        ++ +L  + C  G +
Sbjct: 766 MEI-----SYGVAATLEHYTCMVGIL 786



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 205/458 (44%), Gaps = 97/458 (21%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L+ AR L +++P R   A+ ++I  Y R   + +   LF      + E +  D +++ T+
Sbjct: 133 LEDARKLLDEIPNRTVPAYAALIRSYCR---SEQWDELFSXFRLMVYEGMLPDKYLVPTI 189

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + AC+ +     GK +H  ++   ++ D  +G++L++ Y  CGD  S+  V + M+E D 
Sbjct: 190 LKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDV 249

Query: 239 FCLSALISGYANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
              +ALIS Y   G  ++A+ +F            + W++++SG+  N E   AL    +
Sbjct: 250 VSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEE 309

Query: 295 MR-------------------RNGVLEDA----------------STLASVLSACSSLGF 319
           M                    +NG LEDA                 T+AS+L AC+ L  
Sbjct: 310 MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 369

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  GK +H  A K G++ +V V  +++D YSK G    A K+F + +  +T + N MI  
Sbjct: 370 LRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAA 429

Query: 380 YSSCGRIEDAKHIFRTM-----------------------------------------PN 398
           Y + G++EDA  + R+M                                         PN
Sbjct: 430 YVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPN 489

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLF---------CNMNK---LDLRMDKFSLASVISAC 446
             ++S+N +I G  Q+G   EAL +F         CN N+   L +R +  ++   + AC
Sbjct: 490 --VVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPAC 547

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           A+++    G+++       G + +  +S++LVD Y KC
Sbjct: 548 ADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKC 585



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 153/385 (39%), Gaps = 104/385 (27%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           N +L  + R G  T A  L  EM     + N  S+N +I GF + G   ++L++F +M  
Sbjct: 459 NTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQS 518

Query: 101 ----------------------------------------------KNDFSWNMLISG-- 112
                                                         +N F  N+ +S   
Sbjct: 519 PSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSAL 578

Query: 113 ---FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
              +AK  ++ +A  +F  +  RN ++WN+++  Y+ N    EA++LF E+   L E LQ
Sbjct: 579 VDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEM---LGEGLQ 635

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLD-FDSVLGSSLVNLYGKCGDFNSANQ 228
             +     +  AC D+AA+ +G+ +H +     LD   + + S+L+++Y KCG       
Sbjct: 636 PSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCG------- 688

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                    + DA+ VFD   +    +WN+MIS +  +     A
Sbjct: 689 ------------------------SILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNA 724

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ--------------VHGHACKVG 334
             +F +M   G+  D  T  S+LSAC+  G +E G +              +  + C VG
Sbjct: 725 FAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVG 784

Query: 335 VIDDVIVASALLDTYSKRGMPSDAC 359
           ++    +    LD   +   P DAC
Sbjct: 785 ILGGAGLLDEALDFIRQMPYPPDAC 809



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 144/349 (41%), Gaps = 73/349 (20%)

Query: 177 TVIGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +++  C+ L+     +QIH+ ++ +N L + S +G+ LV LY K                
Sbjct: 88  SLLNRCSTLSEF---RQIHARVVKLNALKWKSSIGNKLVVLYCK---------------- 128

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                         N   + DAR++ D   + +   + ++I  Y  + +  E    F  M
Sbjct: 129 --------------NQWSLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLM 174

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
              G+L D   + ++L ACS++     GK VHG   +  V  DV V +AL+  YS  G  
Sbjct: 175 VYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDL 234

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF---------------------- 393
             +  +F  ++  D +    +I+ Y   G  ++AKHIF                      
Sbjct: 235 GSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGF 294

Query: 394 -------------RTMPNKSLI----SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
                          MP + L     SWN +I G  QNG   +ALD+F  M       + 
Sbjct: 295 ARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNI 354

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++AS++ AC  + +L LG+ +       G+  +  +  S++D Y KCG
Sbjct: 355 ITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCG 403



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 18/234 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L  +C    +I  G+ LH +  K  +      I + L+ MY +CG+  DA  +FD    +
Sbjct: 644 LFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEK 703

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +   WNAMI  F   G    +  +F  M       +  ++  L+S  A+ G ++     F
Sbjct: 704 DVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYF 763

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M     +A     +  M+      G   EA+   +++          DA + AT++ A
Sbjct: 764 NSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQM------PYPPDACMWATLLQA 817

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMK 234
           C   +  E G++    +    L+ D+     L+ N+Y   G ++ A  + + M+
Sbjct: 818 CRVHSNPEIGERAAKALF--ELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMR 869


>gi|413925923|gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]
          Length = 501

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 212/443 (47%), Gaps = 70/443 (15%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH   L+  + ++   +AN L+ MY   G   DA   FDE+P ++   W  +I G ++ G
Sbjct: 126 LHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWG 185

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
             +++ +L    P++N  SW  LI+G+++AG    A   FN               C + 
Sbjct: 186 LLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFN---------------CMLS 230

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G A + V +   L+                   AC+ L  L+ G+ +H  +    +   
Sbjct: 231 DGVAPDEVAVIGALS-------------------ACSKLKNLDLGRLLHLLVGQKRIRMT 271

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSALISGYANCGKMNDARRVFDR 263
             L  +L+++Y KCGD   A  V + +   ++P+ +  +A+I GY   G ++ AR +FD+
Sbjct: 272 DNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPW--NAIIDGYCKLGHVDVARSLFDQ 329

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                 + +NSMI+GYI +    +AL LF +MRR+G+  D  T+ S+L+AC+SLG L HG
Sbjct: 330 MGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHG 389

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           + +H    +  V +DV + +ALLD Y K                               C
Sbjct: 390 RALHASIEQRIVEEDVYLGTALLDMYMK-------------------------------C 418

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           GR+++A  +F  M  + + +W +MI GL+ NG   +AL+ FC M +   +    +  +V+
Sbjct: 419 GRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVL 478

Query: 444 SACANISSLELGEQVFARVTIIG 466
           +AC++ S L+       R  I+ 
Sbjct: 479 TACSHSSLLDERSAALQRDEIVA 501



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 152/288 (52%), Gaps = 7/288 (2%)

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            ++ + L+++Y   G  + A +  + +   D    + +I G    G +++ARR+  +  +
Sbjct: 140 PLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPE 199

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V W S+I+GY       +A+  F+ M  +GV  D   +   LSACS L  L+ G+ +
Sbjct: 200 RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLL 259

Query: 327 HGHAC--KVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSC 383
           H      ++ + D+++VA  L+D Y+K G  + A  +F  + +       N +I  Y   
Sbjct: 260 HLLVGQKRIRMTDNLVVA--LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKL 317

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G ++ A+ +F  M  + +I++NSMI G   +G   +AL LF  M +  +R D F++ S++
Sbjct: 318 GHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLL 377

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +ACA++ +L  G  + A +    ++ D  + T+L+D Y KCG  ++DE
Sbjct: 378 TACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCG--RVDE 423


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  181 bits (459), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 238/497 (47%), Gaps = 61/497 (12%)

Query: 8   LARLLQSCN---THHSI-HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           L  L+ SC    T  S+ +  K L L     GI+  T  + + L++ +  CG    A+++
Sbjct: 68  LTNLISSCTEMGTFESLEYAQKALELFIEDNGIMG-THYMFSSLIRGFSACGLGYKAIVV 126

Query: 64  FDEM------PRRNCFSW--------NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           F ++      P    F +         A+ EGF   G       +  +  +++ F  N L
Sbjct: 127 FRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHG------AIVKMGFERDMFVENSL 180

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE-RL 168
           I  + + GE+   R +F+ M  RN ++W S+I  Y + G  +EAV LF E+    VE  +
Sbjct: 181 IHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM----VEVGI 236

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           + ++  +  VI ACA L  L+ G+Q+ + I    L+ ++++ ++LV++Y K         
Sbjct: 237 RPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMK--------- 287

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                 CG ++ AR++FD   D + V++N+++S Y+      E 
Sbjct: 288 ----------------------CGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREV 325

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L +  +M ++G   D  T+ S +SACS L  +  GK  HG+  + G+     V +A+++ 
Sbjct: 326 LAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINM 385

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G    AC++F  +     +  N++I  +   G +E A  IF  MP+  L+SWN+MI
Sbjct: 386 YMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMI 445

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
             L Q     EA++LF  M    +  DK ++  V SAC  + +L+L + +   +    + 
Sbjct: 446 GALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIH 505

Query: 469 SDQIISTSLVDFYCKCG 485
            D  + T+LVD + +CG
Sbjct: 506 FDMHLGTALVDMFARCG 522



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 122/517 (23%), Positives = 228/517 (44%), Gaps = 75/517 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C    ++  G Q+H   +K G     + + N L+  Y  CG       +FD+M  R
Sbjct: 145 VLSACTKSAALTEGFQVHGAIVKMG-FERDMFVENSLIHFYGECGEIDCMRRVFDKMSER 203

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           N  SW ++I G+ K G  ++++ LF       + P                         
Sbjct: 204 NVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVC 263

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   + N    N L+  + K G +  AR +F++   +N + +N+++  YVR G AR
Sbjct: 264 TCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAR 323

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E + +  E+   L    + D   + + + AC++L  +  GK  H ++L NGL+    + +
Sbjct: 324 EVLAVLGEM---LKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCN 380

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +++N+Y KCG    A +V + M        ++LI+G+   G M  A ++F    D+  V 
Sbjct: 381 AIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVS 440

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI   +  +   EA+ LF  M+  G+  D  T+  V SAC  LG L+  K +HG+  
Sbjct: 441 WNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIK 500

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  +  D+ + +AL+D +++                               CG  + A  
Sbjct: 501 KKDIHFDMHLGTALVDMFAR-------------------------------CGDPQSAMQ 529

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  M  + + +W + I  ++  G+   A++LF  M +  ++ D     ++++A ++   
Sbjct: 530 VFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGL 589

Query: 452 LELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFI 487
           +E G  +F  +  I G+    +    +VD   + G +
Sbjct: 590 VEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLL 626



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 54/296 (18%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           KQ+HS I  NGL+   +   SL NL   C +  +   +    K  + F            
Sbjct: 50  KQLHSQITKNGLNHHPL---SLTNLISSCTEMGTFESLEYAQKALELF------------ 94

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                   + D     +  M++S+I G+ +     +A+++F ++   G + D  T   VL
Sbjct: 95  --------IEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVL 146

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           SAC+    L  G QVHG   K+G   D+ V                              
Sbjct: 147 SACTKSAALTEGFQVHGAIVKMGFERDMFVE----------------------------- 177

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
             N++I  Y  CG I+  + +F  M  ++++SW S+I G ++ G   EA+ LF  M ++ 
Sbjct: 178 --NSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVG 235

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +R +  ++  VISACA +  L+LGEQV   +  + L+ + ++  +LVD Y KCG I
Sbjct: 236 IRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 107/237 (45%), Gaps = 29/237 (12%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C    ++ + K +H  ++KK  ++  + +   L+ M+ RCG+P  A+ +F++M +R+  
Sbjct: 482 ACGYLGALDLAKWIH-GYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVS 540

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDM 129
           +W A I      G+   +++LF+ M Q+    +   +  L++  +  G ++    +F  M
Sbjct: 541 AWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSM 600

Query: 130 P-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC-- 182
                    A+ +  M+    R G   EA+ L   +      +++ +  I  +++ AC  
Sbjct: 601 KDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSM------QMEPNDVIWGSLLAACRV 654

Query: 183 ---ADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKE 235
               D+AA    +       ++ LD +   +   L N+Y   G ++   +V   +KE
Sbjct: 655 HKNVDIAAYAAER-------ISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKE 704


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 134/521 (25%), Positives = 222/521 (42%), Gaps = 106/521 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C    +I  G+ LH   +K G+++S   +++ L+ MYM+ G       +F++M  RN
Sbjct: 131 LKACALGVNICFGELLHGFSVKSGLIHSVF-VSSALIDMYMKVGKIEQGCRVFEKMMTRN 189

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------- 100
             SW A+I G +  G+  + L  F+ M +                               
Sbjct: 190 VVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHT 249

Query: 101 --------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                   ++ F  N L + + K G+      LF  M   + ++W ++I  YV+ G    
Sbjct: 250 QTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEH 309

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           AV  FK +    V     + +  A VI +CA+LAA ++G+QIH H+L  GL     + +S
Sbjct: 310 AVEAFKRMRKSYVSP---NKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANS 366

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           ++ LY KC                               G +  A  VF   T    + W
Sbjct: 367 IITLYSKC-------------------------------GLLKSASLVFHGITRKDIISW 395

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           +++IS Y       EA      MRR G   +   L+SVLS C S+  LE GKQVH H   
Sbjct: 396 STIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLC 455

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  + +V SA+                               I++YS CG +++A  I
Sbjct: 456 IGIDHEAMVHSAI-------------------------------ISMYSKCGSVQEASKI 484

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  M    +ISW +MI G +++G   EA++LF  ++ + L+ D      V++AC +   +
Sbjct: 485 FNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMV 544

Query: 453 ELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +LG   F  +T +  +   +     L+D  C+ G +   E+
Sbjct: 545 DLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEH 585



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 121/524 (23%), Positives = 221/524 (42%), Gaps = 144/524 (27%)

Query: 43  IANRLLQMYMRCGNPTDALLLFD----EMPRRNCFSWNAMIE------GFMKLGHKEKSL 92
           I+NR    Y+  G  T+   L      E P  N +S + M+E        +K G   K+ 
Sbjct: 22  ISNR----YILTGTATECRELIQQPIQEQPAENAYSVHNMLELNSELKQLVKQGQLCKAR 77

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM-----PRRNA------------- 134
            +F+ M  +++ SW  LI+G+  A +   A  LF++M     P+R+              
Sbjct: 78  YMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALG 137

Query: 135 --IAWNSMIH--------------------CYVRNGFAREAVRLFKELNSDLV------- 165
             I +  ++H                     Y++ G   +  R+F+++ +  V       
Sbjct: 138 VNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAII 197

Query: 166 ---------------------ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
                                 ++  D+   A  + A AD + L +GK IH+  +  G D
Sbjct: 198 AGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFD 257

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
             S + ++L  +Y KCG  +   ++   M+ PD    + LIS Y   G            
Sbjct: 258 ESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMG------------ 305

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                              E+  A+  F +MR++ V  +  T A+V+S+C++L   + G+
Sbjct: 306 -------------------EEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGE 346

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+HGH  ++G+++ + VA++++  YSK G+   A  +F  +   D I  +T+I+VY    
Sbjct: 347 QIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVY---- 402

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                                      SQ G   EA D    M +   + ++F+L+SV+S
Sbjct: 403 ---------------------------SQGGYAKEAFDYLSWMRREGPKPNEFALSSVLS 435

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            C +++ LE G+QV A +  IG+D + ++ ++++  Y KCG ++
Sbjct: 436 VCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQ 479



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 108/223 (48%), Gaps = 43/223 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ SC    +   G+Q+H H L+ G++N+ L +AN ++ +Y +CG    A L+F  +
Sbjct: 329 FAAVISSCANLAAAKWGEQIHGHVLRLGLVNA-LSVANSIITLYSKCGLLKSASLVFHGI 387

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW----------------- 106
            R++  SW+ +I  + + G+ +++    + M    P+ N+F+                  
Sbjct: 388 TRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGK 447

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + +IS ++K G ++ A  +FN M   + I+W +MI+ Y  +G
Sbjct: 448 QVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHG 507

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +++EA+ LF++++S     L+ D  +   V+ AC     ++ G
Sbjct: 508 YSQEAINLFEKISS---VGLKPDYVMFIGVLTACNHAGMVDLG 547



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 21/238 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C +   +  GKQ+H H L  GI +  + + + ++ MY +CG+  +A  +F+ M
Sbjct: 430 LSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAM-VHSAIISMYSKCGSVQEASKIFNGM 488

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNM-LISGFAKAGELKTAR 123
              +  SW AMI G+ + G+ ++++ LF  +     K D+   + +++    AG +    
Sbjct: 489 KINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGF 548

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M     I+     +  +I    R G   EA  + + +          D  + +T+
Sbjct: 549 YYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMP------FHTDDVVWSTL 602

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGS--SLVNLYGKCGDFNSANQVLNMMK 234
           + AC     ++ G+     +L   LD +S  G+  +L N+Y   G +  A  +  +MK
Sbjct: 603 LRACRVHGDVDRGRWTAEQLL--QLDPNSA-GTHITLANIYAAKGRWKEAAHIRKLMK 657


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 192/391 (49%), Gaps = 45/391 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+SC +   +  G+Q+H H LK G L   L I N L+ +Y  CG   DA  L D M  R+
Sbjct: 115 LKSCGSFSGVEEGRQIHGHVLKTG-LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERD 173

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
             SWNA++  + + G  E +  LF+ M ++N  SWN +ISG+   G L+ AR +F + P 
Sbjct: 174 VVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPV 233

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           +N ++WN+MI  Y   G   E + LF+++    V+   C    L +V+ ACA + AL  G
Sbjct: 234 KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNC---TLVSVLSACAHVGALSQG 290

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           + +H++I  NG+  D  + ++LV++Y KCG    A +V N        CL   IS     
Sbjct: 291 EWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNS-------CLRKDIS----- 338

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                               WNS+ISG  ++     AL +F +M   G   +  T   VL
Sbjct: 339 -------------------TWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVL 379

Query: 312 SACSSLGFLEHGKQ-----VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           SACS  G L+ G++     VH H    G+   +     ++D   + G+  +A +L  ++ 
Sbjct: 380 SACSRAGLLDEGREMFNLMVHVH----GIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMP 435

Query: 367 VYD-TILLNTMITVYSSCGRIEDAKHIFRTM 396
             + +++  +++    + G +E A+ + + +
Sbjct: 436 QKEASVVWESLLGACRNHGNVELAERVAQKL 466



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 188/414 (45%), Gaps = 66/414 (15%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +S  + A  +  A ++F+ +P  N+  WN++I  Y  +     A+ +F ++   L   + 
Sbjct: 49  VSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQM---LHASVL 105

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D +     + +C   + +E G+QIH H+L  GL  D  + ++L++LY  CG    A  +
Sbjct: 106 PDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHL 165

Query: 230 LNMMKEPDDFCLSAL-------------------------------ISGYANCGKMNDAR 258
           L+ M E D    +AL                               ISGY   G + +AR
Sbjct: 166 LDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEAR 225

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           RVF  T   + V WN+MI+GY      +E L+LF  M+  GV  D  TL SVLSAC+ +G
Sbjct: 226 RVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVG 285

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
            L  G+ VH +  K G+  D  VA+AL+D YSK                           
Sbjct: 286 ALSQGEWVHAYIDKNGISIDGFVATALVDMYSK--------------------------- 318

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
               CG IE A  +F +   K + +WNS+I GLS +GS   AL +F  M     + ++ +
Sbjct: 319 ----CGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVT 374

Query: 439 LASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              V+SAC+    L+ G ++F   V + G+         +VD   + G ++  E
Sbjct: 375 FVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAE 428



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 153/327 (46%), Gaps = 59/327 (18%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q H+HIL +GL   +   S L+                            A +S  ++  
Sbjct: 25  QAHAHILKSGLIHSTFAASRLI----------------------------ASVSTNSHAQ 56

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  A  +F R  + +S MWN++I  Y ++     AL +FH+M    VL D  T    L 
Sbjct: 57  AIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALK 116

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDD-------------------------------VIV 341
           +C S   +E G+Q+HGH  K G+ DD                               V+ 
Sbjct: 117 SCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVS 176

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +ALL  Y++RG+   AC LF E+   +    N MI+ Y   G +E+A+ +F   P K++
Sbjct: 177 WNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNV 236

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           +SWN+MI G S  G   E L LF +M    ++ D  +L SV+SACA++ +L  GE V A 
Sbjct: 237 VSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAY 296

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +   G+  D  ++T+LVD Y KCG I+
Sbjct: 297 IDKNGISIDGFVATALVDMYSKCGSIE 323



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 23/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++  G+ +H +  K GI      +A  L+ MY +CG+   AL +F+  
Sbjct: 274 LVSVLSACAHVGALSQGEWVHAYIDKNGISIDGF-VATALVDMYSKCGSIEKALEVFNSC 332

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
            R++  +WN++I G    G  + +LQ+F+ M     + N+ ++  ++S  ++AG L   R
Sbjct: 333 LRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGR 392

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +FN M   + I      +  M+    R G   EA  L +++           + +  ++
Sbjct: 393 EMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEA------SVVWESL 446

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMK 234
           +GAC +   +E  +++   +    L+      SS V   N+Y   G +    +V   M+
Sbjct: 447 LGACRNHGNVELAERVAQKL----LELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMR 501


>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 422

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 169/313 (53%), Gaps = 35/313 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C    +   G QLH H +K+G L   + I +  +QMY   G+   A  + DE    
Sbjct: 135 LLKACGVATAAKEGVQLHGHVIKQG-LTGDVHIRSAGIQMYATLGHMAAARRMLDEDGES 193

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +   +NAMI+G+ K G  + + +LF  M  ++  SWN+++SG AK G +K AR LFNDM 
Sbjct: 194 DVICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMR 253

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ I+W+SMI  Y++ G  +EA+ +F  +     E+++   F+L++V+ ACA+L AL+ 
Sbjct: 254 EKDEISWSSMIDGYIKGGNYKEALEVFNVMQE---EKIRPKKFVLSSVLAACANLGALDQ 310

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ IH+++  N +  D+VLG++LV++Y KCG  + A  V   MKE + F  +A+I G A 
Sbjct: 311 GRWIHAYVKKNPMYLDAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAM 370

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+  DA +                               LF KM++  V  +  T   +
Sbjct: 371 HGRAEDAIK-------------------------------LFLKMQKEKVRSNEITFVGL 399

Query: 311 LSACSSLGFLEHG 323
           L+AC+  G ++ G
Sbjct: 400 LNACAHKGMVDEG 412



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 170/365 (46%), Gaps = 65/365 (17%)

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           A T+F+ +P+ N   +N +I   + N    +A+  + ++   +    + + F   +++ A
Sbjct: 82  AFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKM---VAANARPNKFTYPSLLKA 138

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           C    A + G Q+H H++  GL  D  + S+ + +Y   G   +A ++L+   E D  C 
Sbjct: 139 CGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICF 198

Query: 242 SALISGYANCGKMNDARRVFDRTTDTS-------------------------------SV 270
           +A+I GY   G ++ A+ +F++  D S                                +
Sbjct: 199 NAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEI 258

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+SMI GYI      EAL +F+ M+   +      L+SVL+AC++LG L+ G+ +H + 
Sbjct: 259 SWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYV 318

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K  +  D ++ +AL+D Y+K                               CGR++ A 
Sbjct: 319 KKNPMYLDAVLGTALVDMYAK-------------------------------CGRLDMAW 347

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F TM  K + +WN+MI GL+ +G   +A+ LF  M K  +R ++ +   +++ACA+  
Sbjct: 348 DVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEITFVGLLNACAHKG 407

Query: 451 SLELG 455
            ++ G
Sbjct: 408 MVDEG 412



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 136/286 (47%), Gaps = 33/286 (11%)

Query: 237 DDFCLSALISGYANC--GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           D +    L+  YAN     ++ A  VFD     +  ++N +I   + N+E  +A+  ++K
Sbjct: 60  DHYVSGTLLKCYANPHFKNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYK 119

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M       +  T  S+L AC      + G Q+HGH  K G+  DV + SA +  Y+  G 
Sbjct: 120 MVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYATLGH 179

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
            + A ++  E    D I  N MI  Y   G ++ AK +F  M ++S+ SWN M+ GL++N
Sbjct: 180 MAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKN 239

Query: 415 GSPIEALDLFCNMNKLD-------------------------------LRMDKFSLASVI 443
           G   EA +LF +M + D                               +R  KF L+SV+
Sbjct: 240 GMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVL 299

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +ACAN+ +L+ G  + A V    +  D ++ T+LVD Y KCG + M
Sbjct: 300 AACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKCGRLDM 345



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 42/189 (22%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------ 98
           N ++    + G   +A  LF++M  ++  SW++MI+G++K G+ +++L++FNVM      
Sbjct: 230 NVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIR 289

Query: 99  PQKNDFS----------------W-----------------NMLISGFAKAGELKTARTL 125
           P+K   S                W                   L+  +AK G L  A  +
Sbjct: 290 PKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKCGRLDMAWDV 349

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  M  +    WN+MI     +G A +A++LF ++     E+++ +      ++ ACA  
Sbjct: 350 FETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQK---EKVRSNEITFVGLLNACAHK 406

Query: 186 AALEYGKQI 194
             ++ G  I
Sbjct: 407 GMVDEGLNI 415



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C    ++  G+ +H  ++KK  +     +   L+ MY +CG    A  +F+ M
Sbjct: 295 LSSVLAACANLGALDQGRWIHA-YVKKNPMYLDAVLGTALVDMYAKCGRLDMAWDVFETM 353

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             +  F+WNAMI G    G  E +++LF  M ++    N+ ++  L++  A  G +    
Sbjct: 354 KEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEITFVGLLNACAHKGMVDEGL 413

Query: 124 TLFNDMPR 131
            + + M +
Sbjct: 414 NILDSMEK 421


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 215/447 (48%), Gaps = 53/447 (11%)

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           G+ +++  +F+ MP KN  SW  +++ FA+ G+++ AR LF++MP+R  ++ N+MI  Y+
Sbjct: 55  GNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYI 114

Query: 146 RNGFAREAVRLFKELNSDLVER--LQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           RNG     V    EL S L ER  +   A I+  V      +A   Y +  +        
Sbjct: 115 RNGCN---VGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPYEF------ 165

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             D    ++L+N Y K G+ N A ++   M E D    SA++ G    G++  AR +FDR
Sbjct: 166 -RDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDR 224

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 322
             D + V W++MI GY+      E   LF  M+R G++E +++T+  +  AC + G +  
Sbjct: 225 MPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSE 284

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G Q+HG   ++G   D +++++++  YS  G    A K+F  +   D +  N++I+ Y  
Sbjct: 285 GMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIH 344

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
              +E A  +F  MP K +ISW +MI G S++G    A++LF   N L  + D F   ++
Sbjct: 345 NNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELF---NMLPAK-DDFVWTAI 400

Query: 443 ISACANISSLELGEQVFARVTIIG-----------------------------------L 467
           IS   N +  E     +AR+   G                                   L
Sbjct: 401 ISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNL 460

Query: 468 DSDQIISTSLVDFYCKCGFIKMDEYYL 494
           + +  I  SL+ FY K G + +D Y +
Sbjct: 461 EYNLSIQNSLISFYSKSGNV-VDAYRI 486



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 230/454 (50%), Gaps = 25/454 (5%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           ++  +++ G    A  L+ E P   R+    NA+I G++K+G   ++L++F  M +++  
Sbjct: 141 MIMGFVKAGKFHMAEKLYRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVV 200

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW+ ++ G  + G +  AR LF+ MP RN ++W++MI  Y+  GF +E   LF ++  + 
Sbjct: 201 SWSAMVDGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREG 260

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +  ++ ++  +  +  AC +   +  G QIH  +   G +FD+VL +S++ +Y   G  +
Sbjct: 261 L--VEVNSTTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTD 318

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A++V   + + D    ++LISGY +  ++  A RVF R      + W +MI+G+  +  
Sbjct: 319 MADKVFCTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGR 378

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL---EHGKQVHGHA------CKVGV 335
              A+ LF+ +      +D     +++S     GF+   E+ + +H +A      CK   
Sbjct: 379 VENAIELFNMLP----AKDDFVWTAIIS-----GFVNNNEYEEALHWYARMIWEGCKPNP 429

Query: 336 ID-DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +    ++A++        G+    C L   L+ Y+  + N++I+ YS  G + DA  IF 
Sbjct: 430 LTISSVLAASAALVALNEGLQIHTCILKMNLE-YNLSIQNSLISFYSKSGNVVDAYRIFL 488

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            +   ++IS+NS+I G +QNG   EAL ++  M       +  +  +V+SAC +   ++ 
Sbjct: 489 DVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDE 548

Query: 455 GEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
           G  +F  + +  G++ +      +VD   + G +
Sbjct: 549 GWNIFNTMKSHYGIEPEADHYACMVDILGRAGLL 582



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 183/384 (47%), Gaps = 28/384 (7%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL------ 160
           N  I+   + G +K A ++F+ MP +N  +W +M+  + +NG  + A RLF E+      
Sbjct: 45  NTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTV 104

Query: 161 -NSDLVE---RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF----------- 205
            N+ ++    R  C+      +    A+   + Y   I   +                  
Sbjct: 105 SNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPYE 164

Query: 206 --DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             D    ++L+N Y K G+ N A ++   M E D    SA++ G    G++  AR +FDR
Sbjct: 165 FRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLFDR 224

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 322
             D + V W++MI GY+      E   LF  M+R G++E +++T+  +  AC + G +  
Sbjct: 225 MPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSE 284

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G Q+HG   ++G   D +++++++  YS  G    A K+F  +   D +  N++I+ Y  
Sbjct: 285 GMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLISGYIH 344

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
              +E A  +F  MP K +ISW +MI G S++G    A++LF   N L  + D F   ++
Sbjct: 345 NNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELF---NMLPAK-DDFVWTAI 400

Query: 443 ISACANISSLELGEQVFARVTIIG 466
           IS   N +  E     +AR+   G
Sbjct: 401 ISGFVNNNEYEEALHWYARMIWEG 424



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 179/404 (44%), Gaps = 67/404 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           + ++C     +  G Q+H    + G     + ++N ++ MY   G    A  +F  +  +
Sbjct: 272 MFKACGNCGRMSEGMQIHGLVSRLGFEFDNV-LSNSVITMYSMLGCTDMADKVFCTVSDK 330

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  +WN++I G++     E + ++F  MP K+  SW  +I+GF+K+G ++ A  LFN +P
Sbjct: 331 DIVTWNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLP 390

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++   W ++I  +V N    EA+  +  +   + E  + +   +++V+ A A L AL  
Sbjct: 391 AKDDFVWTAIISGFVNNNEYEEALHWYARM---IWEGCKPNPLTISSVLAASAALVALNE 447

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G QIH+ IL   L+++  + +SL++ Y K                               
Sbjct: 448 GLQIHTCILKMNLEYNLSIQNSLISFYSKS------------------------------ 477

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + DA R+F    + + + +NS+ISG+  N    EAL ++ KM+  G   +  T  +V
Sbjct: 478 -GNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAV 536

Query: 311 LSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           LSAC+  G ++ G  + +      G+  +        D Y        AC          
Sbjct: 537 LSACTHAGLVDEGWNIFNTMKSHYGIEPEA-------DHY--------AC---------- 571

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                 M+ +    G +++A  + R+MP K        I+G S+
Sbjct: 572 ------MVDILGRAGLLDEAIDLIRSMPFKPHSGVWGAILGASK 609



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 133/277 (48%), Gaps = 14/277 (5%)

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
           G+ G+   A  + + M   +    +A+++ +A  G++ +ARR+FD     ++V  N+MIS
Sbjct: 52  GRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMIS 111

Query: 278 GYISNNEDT-EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV- 335
            YI N  +  +A  LF  +    ++  A+ +         +GF++ GK            
Sbjct: 112 AYIRNGCNVGKAYELFSVLAERNLVSYAAMI---------MGFVKAGKFHMAEKLYRETP 162

Query: 336 --IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
               D   ++AL++ Y K G  ++A ++F  +   D +  + M+      GR+  A+ +F
Sbjct: 163 YEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLF 222

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSL 452
             MP+++++SW++MI G    G   E   LF +M +  L  ++  ++  +  AC N   +
Sbjct: 223 DRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRM 282

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
             G Q+   V+ +G + D ++S S++  Y   G   M
Sbjct: 283 SEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDM 319



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           I  NT I      G +++A+ IF  MP K+  SW +M+   +QNG    A  LF  M
Sbjct: 42  IQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEM 98


>gi|125558992|gb|EAZ04528.1| hypothetical protein OsI_26678 [Oryza sativa Indica Group]
          Length = 585

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 192/380 (50%), Gaps = 11/380 (2%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAR 151
           LF   P     +   L++  A AG L+ A   F+ +P  RR+ +  N+M+  + R   A 
Sbjct: 85  LFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAA 144

Query: 152 EAVRLFKELNSDLVERLQCDAFI-LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            AV +F  L      R    +F  L + +G   +LAA  +  Q+H  +L +G      + 
Sbjct: 145 PAVSVFHALLGSGSLRPDDYSFTALLSAVGQMHNLAA-PHCTQLHCSVLKSGAAAVLSVS 203

Query: 211 SSLVNLYGKCGDFNS---ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           ++L+ LY KC    +   A +VL+ M + DD   + ++ GY   G +N AR VF+     
Sbjct: 204 NALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGK 263

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V+WN+MISGY+ +    +A  LF +M    V  D  T  SVLSAC++ GF  HGK VH
Sbjct: 264 FDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 323

Query: 328 GHACKVG---VIDDVI-VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           G   ++    V +  + V +AL+  YSK G    A ++F  + + D +  NT+++ Y   
Sbjct: 324 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 383

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G ++ A  +F+ MP K+ +SW  M+ G    G   +AL LF  M   D++   ++ A  I
Sbjct: 384 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 443

Query: 444 SACANISSLELGEQVFARVT 463
           +AC  + +L+ G Q+ A + 
Sbjct: 444 AACGELGALKHGRQLHAHLV 463



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 39/320 (12%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           QLH   LK G   + L ++N L+ +YM+C  P                SW+A        
Sbjct: 186 QLHCSVLKSGA-AAVLSVSNALIALYMKCDTPEA--------------SWDAR------- 223

Query: 86  GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                  ++ + MP K+D +W  ++ G+ + G++  AR++F ++  +  + WN+MI  YV
Sbjct: 224 -------KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 276

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G   +A  LF+ + S   E++  D F   +V+ ACA+     +GK +H  I+    +F
Sbjct: 277 QSGMCADAFELFRRMVS---EKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNF 333

Query: 206 DS----VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
                  + ++LV LY K G    A ++ + M   D    + ++SGY + G ++ A  VF
Sbjct: 334 VPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVF 393

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                 + + W  M+SGY+      +AL LF++MR   V     T A  ++AC  LG L+
Sbjct: 394 KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALK 453

Query: 322 HGKQVHGHAC---KVGVIDD 338
           HG+Q+H H     K+G + D
Sbjct: 454 HGRQLHAHLVQMRKLGYVPD 473



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 39/193 (20%)

Query: 11  LLQSC-NTHHSIHVGKQLHLHFLK---KGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +L +C N    +H GK +H   ++     +  + LP+ N L+ +Y + G    A  +FD 
Sbjct: 306 VLSACANAGFFVH-GKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           M  ++  SWN ++ G++  G  +K++++F VMP KND SW +++SG+             
Sbjct: 365 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGY------------- 411

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
                             V  G + +A++LF ++ ++ V+   CD +  A  I AC +L 
Sbjct: 412 ------------------VHGGLSEDALKLFNQMRAEDVK--PCD-YTYAGAIAACGELG 450

Query: 187 ALEYGKQIHSHIL 199
           AL++G+Q+H+H++
Sbjct: 451 ALKHGRQLHAHLV 463


>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
 gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 205/436 (47%), Gaps = 68/436 (15%)

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE 118
           +A  +FDE+P +N  SWNAMI+GF + G  E++  LF  M  +N  +W  +I+G+ + G+
Sbjct: 144 EARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAGYCRIGD 203

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           ++ A   F  +P RN ++W +MI  +  NG+  EA+ LF E+          + FI  ++
Sbjct: 204 VREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFI--SL 261

Query: 179 IGACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYG----------------- 218
             ACA +     GKQ+H+ +++NGL   D+D  +  SL+++Y                  
Sbjct: 262 AYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLN 321

Query: 219 ---------------KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
                          + G    A ++ + +   D+   +++I GY + G +++A  +F+ 
Sbjct: 322 SHAVQSCNHMINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFEN 381

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             D  SV W SMISG + N    +A     +M  +G    +ST A +  A  ++  L+ G
Sbjct: 382 MPDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGAIAHLDFG 441

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +Q+H    K     D+I++++L+  Y+K G   DA  +F+ +   D I            
Sbjct: 442 RQLHNMLMKTLSDCDLILSNSLISMYAKCGEIHDAYSIFTNMIYRDLI------------ 489

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
                              SWN+MI+GL+ +    E L +F  M +   R +  +   ++
Sbjct: 490 -------------------SWNTMIMGLAHHALANETLKVFETMLQSGTRPNSVTFLGIL 530

Query: 444 SACANISSLELGEQVF 459
           SAC++   +  G ++F
Sbjct: 531 SACSHAGLVSQGCKLF 546



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 220/465 (47%), Gaps = 51/465 (10%)

Query: 63  LFDEMPRRNCFS----WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE 118
           L D+ P R+  S    W +++  + ++G  ++S  LF++MP++N  S+N+++SG+ + G 
Sbjct: 20  LLDKFPERSRHSRIAHWTSLLTKYSRIGFIDESRVLFDIMPERNIVSYNVMLSGYLQCGR 79

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  AR LF +MP RN ++W SM+      G   EA  LFKE+    V          A V
Sbjct: 80  LSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKEMPERNVVSWN------AMV 133

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            G   +   LE  +++   I     + + V  ++++  + + G    A  +   M++ + 
Sbjct: 134 AGLIKN-EDLEEARRVFDEI----PEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNV 188

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RR 297
              + +I+GY   G + +A   F R  + + V W +MISG+  N    EALLLF +M RR
Sbjct: 189 ITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRR 248

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI---DDVIVASALLDTYSKRGM 354
           + +  +  T  S+  AC+ + F   GKQ+H      G+     D  +A +L+  YS  G 
Sbjct: 249 SNIAPNGETFISLAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGA 308

Query: 355 PSDACKLFSE-LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
              A  +F++ L  +     N MI  Y+  G++E A+ +F T+P +  I+W SMIVG   
Sbjct: 309 MDYAHYVFNKNLNSHAVQSCNHMINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFD 368

Query: 414 NGSPIEALDLFCNM-----------------NKLDLRMDKFSL--------------ASV 442
            G+  EA  LF NM                 N+L L+   F L              A +
Sbjct: 369 IGNVSEACYLFENMPDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAIL 428

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             A   I+ L+ G Q+   +     D D I+S SL+  Y KCG I
Sbjct: 429 FGAAGAIAHLDFGRQLHNMLMKTLSDCDLILSNSLISMYAKCGEI 473



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 148/320 (46%), Gaps = 45/320 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLLFDE-M 67
           L  +C      H+GKQLH   +  G+        IA  L+ MY   G    A  +F++ +
Sbjct: 261 LAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNL 320

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                 S N MI G+ ++G  EK+ +LF+ +P +++ +W  +I G+   G +  A  LF 
Sbjct: 321 NSHAVQSCNHMINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFE 380

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL----ATVIGACA 183
           +MP ++++AW SMI   V+N        LF +  S L+  L   A  L    A + GA  
Sbjct: 381 NMPDKDSVAWTSMISGLVQN-------ELFLKATSFLLRMLAHGAPPLSSTYAILFGAAG 433

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            +A L++G+Q+H+ ++    D D +L +SL+++Y KCG+                     
Sbjct: 434 AIAHLDFGRQLHNMLMKTLSDCDLILSNSLISMYAKCGE--------------------- 472

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                     ++DA  +F        + WN+MI G   +    E L +F  M ++G   +
Sbjct: 473 ----------IHDAYSIFTNMIYRDLISWNTMIMGLAHHALANETLKVFETMLQSGTRPN 522

Query: 304 ASTLASVLSACSSLGFLEHG 323
           + T   +LSACS  G +  G
Sbjct: 523 SVTFLGILSACSHAGLVSQG 542


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 230/504 (45%), Gaps = 86/504 (17%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYM------RCGNPTDA 60
           ++  LL+ C    SI    Q+H H +  G  + +  +A++L+  Y       R G    A
Sbjct: 12  HVLELLRQCR---SIQHLDQIHAHLVVHGFSDVS-SVASQLIASYCTLSAGDRDGGLCHA 67

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW---------- 106
             LFD +P  + F +N ++  +      +++L+L   + Q+    N+F+           
Sbjct: 68  RRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTV 127

Query: 107 -------------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                                    N L+   A AG L+ +R  F +M  RN ++WN+MI
Sbjct: 128 RAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMI 187

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y + G   EA  LF E+     + L  D F L +++ AC+    LE G+ +H H+LV+
Sbjct: 188 GGYAQAGEVSEACALFGEMRH---QGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVS 244

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G   D +LG++L+++YGKCGD   A++  +MM   +    ++++   A  G ++  R  F
Sbjct: 245 GSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWF 304

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           ++  + + V WN+MIS Y+      E L L+++MR  G+  D  TLA VLSAC   G L 
Sbjct: 305 EQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLA 364

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK +H +         V + ++LLD Y++ G    A  LF+E+   + I  N +I   +
Sbjct: 365 SGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALA 424

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             GR ++    FRTM + +               SP                 D+ +   
Sbjct: 425 MHGRAQETVTFFRTMVSDAF--------------SP-----------------DEITFVG 453

Query: 442 VISACANISSLELGEQVF---ARV 462
           ++SAC++   LE GE  F   ARV
Sbjct: 454 LLSACSHGGLLEAGEYYFEAMARV 477



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 182/376 (48%), Gaps = 34/376 (9%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           +S   + G L  AR LF+ +P  +   +N+++  Y  +   +EA+RL + +   L   + 
Sbjct: 55  LSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGV---LQRGIL 111

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            + F L  V+ AC  + A+E+   + +H +V  L F                      Q+
Sbjct: 112 PNEFTLPFVLKACTTVRAVEHA--LAAHGVVVKLGF--------------------VQQI 149

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
                    F  +AL+  +A+ G + D+RR F    D + V WN+MI GY    E +EA 
Sbjct: 150 ---------FVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEAC 200

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF +MR  G+L D  TL S+L ACSS G LE G+ VH H    G   D I+ +ALLD Y
Sbjct: 201 ALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMY 260

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K G    A + F  + + + +   +M+   +  G ++  +  F  MP ++++SWN+MI 
Sbjct: 261 GKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMIS 320

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
              Q G   E LDL+  M  L +  D+F+LA V+SAC     L  G+ +   V     D 
Sbjct: 321 CYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDP 380

Query: 470 DQIISTSLVDFYCKCG 485
              +  SL+D Y +CG
Sbjct: 381 GVTLLNSLLDMYARCG 396



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 140/303 (46%), Gaps = 56/303 (18%)

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           ++++  QIH+H++V+G    S + S L+  Y                           +S
Sbjct: 22  SIQHLDQIHAHLVVHGFSDVSSVASQLIASY-------------------------CTLS 56

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
                G +  ARR+FDR  +    M+N+++  Y +++   EAL L   + + G+L +  T
Sbjct: 57  AGDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFT 116

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           L  VL AC+++  +EH    HG   K+G +  + VA+ALL  ++  G   D+ + F E+ 
Sbjct: 117 LPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMA 176

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
             + +  NTMI  Y+  G + +A  +F  M ++ L++                       
Sbjct: 177 DRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLA----------------------- 213

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
                   D F+L S++ AC++  +LE+G  V   + + G   D+I+  +L+D Y KCG 
Sbjct: 214 --------DVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGD 265

Query: 487 IKM 489
           + M
Sbjct: 266 LWM 268



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C  +  +  GK +H  +++    +  + + N LL MY RCG    A+ LF EM
Sbjct: 350 LAGVLSACGQNGDLASGKMIHC-YVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEM 408

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
           P +N  SWN +I      G  ++++  F  M       ++ ++  L+S  +  G L+   
Sbjct: 409 PNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGE 468

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M R   +      +  M+    R G   +AV L K+++      ++ D  +   +
Sbjct: 469 YYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMS------IKPDVVVWGAL 522

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
           +GAC     +E GK +   +    L+ + + G   V   NL+ +   +    ++  +MKE
Sbjct: 523 LGACRIHGNVEIGKLVIKQL----LELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKE 578


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 149/518 (28%), Positives = 232/518 (44%), Gaps = 108/518 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK-LGHK--EKSLQLFNVMPQK 101
           N ++  Y+       A  LFDEMPRR+  SWN ++ G+    G +  E+  +LF +MPQ+
Sbjct: 74  NSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSCRGSRFVEEGRRLFELMPQR 133

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           +  SWN +ISG+AK G +  A  LFN MP RNA++ N++I  ++ NG    AV  F+ + 
Sbjct: 134 DCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMP 193

Query: 162 SDLVERLQCDAFILATVIGACADLAA---------------------LEYGKQIH---SH 197
                 L   A I   V     D+AA                       YG++ H   + 
Sbjct: 194 EHYSTSLS--ALISGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEAR 251

Query: 198 ILVNGLDFDS--------------VLGSSLVNLYGKCGDFNSANQVLNMMKE-------- 235
            L +G+  D               V  +S++  Y K GD  SA ++ + M E        
Sbjct: 252 RLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNT 311

Query: 236 -----------------------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                  PD    + ++SG+A  G +N A+  F+R    + + W
Sbjct: 312 MISGYVQISNMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISW 371

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           NS+I+GY  N +   A+ LF +M+  G   D  TL+SV+S C+ L  L  GKQ+H    K
Sbjct: 372 NSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTK 431

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKH 391
           + VI D  + ++L+  YS+ G   DAC +F+E+K+Y D I  N MI  Y+S         
Sbjct: 432 I-VIPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYAS--------- 481

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                                 +G   EAL+LF  M +L +     +  SV++ACA+   
Sbjct: 482 ----------------------HGLAAEALELFKLMKRLKIHPTYITFISVMNACAHAGL 519

Query: 452 LELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +E G + F + +   G++       SLVD   + G ++
Sbjct: 520 VEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQ 557



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 227/471 (48%), Gaps = 74/471 (15%)

Query: 38  NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
           +S L  +N+ +   +R G  ++A  LFD M  R+  +WN+MI G++      ++ QLF+ 
Sbjct: 36  SSPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDE 95

Query: 98  MPQKNDFSWNMLISG-FAKAGE--LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
           MP+++  SWN+++SG F+  G   ++  R LF  MP+R+ ++WN++I  Y +NG   +A+
Sbjct: 96  MPRRDVVSWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQAL 155

Query: 155 RLFKELNSDLVER--LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           +LF  +     ER  +  +A I   ++    D +A+++ + +  H         S   S+
Sbjct: 156 KLFNAM----PERNAVSSNALITGFLLNGDVD-SAVDFFRTMPEHY--------STSLSA 202

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSA---LISGYANCGKMNDARRVFDRTTDTSS 269
           L++   + G+ + A  +L      DD  + A   LI+GY   G + +ARR+FD   D   
Sbjct: 203 LISGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRG 262

Query: 270 -------------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
                        V WNSM+  Y+   +   A  LF +M    V +D  +  +++S    
Sbjct: 263 DGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRM----VEQDTCSWNTMISGYVQ 318

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           +  +E                                   +A KLF E+ + D +  N +
Sbjct: 319 ISNME-----------------------------------EASKLFREMPIPDVLSWNLI 343

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           ++ ++  G +  AK  F  MP K+LISWNS+I G  +N     A+ LF  M     R D+
Sbjct: 344 VSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDR 403

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +L+SV+S C  + +L LG+Q+   VT I +  D  I+ SL+  Y +CG I
Sbjct: 404 HTLSSVMSVCTGLVNLYLGKQIHQLVTKIVI-PDSPINNSLITMYSRCGAI 453



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 158/323 (48%), Gaps = 37/323 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y++ G+   A  LFD M  ++  SWN MI G++++ + E++ +LF  MP  +  
Sbjct: 279 NSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVL 338

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SWN+++SGFA+ G+L  A+  F  MP +N I+WNS+I  Y +N   + A++LF  +    
Sbjct: 339 SWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQ--- 395

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            E  + D   L++V+  C  L  L  GKQIH  ++   +  DS + +SL+ +Y +CG   
Sbjct: 396 FEGERPDRHTLSSVMSVCTGLVNLYLGKQIH-QLVTKIVIPDSPINNSLITMYSRCGAIV 454

Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            A  V N +K   D    +A+I GYA+ G                               
Sbjct: 455 DACTVFNEIKLYKDVITWNAMIGGYASHGLA----------------------------- 485

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVA 342
              EAL LF  M+R  +     T  SV++AC+  G +E G +Q        G+   V   
Sbjct: 486 --AEALELFKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHF 543

Query: 343 SALLDTYSKRGMPSDACKLFSEL 365
           ++L+D   ++G   +A  L + +
Sbjct: 544 ASLVDILGRQGQLQEAMDLINTM 566



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 37/249 (14%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++  C    ++++GKQ+H    K  I +S  PI N L+ MY RCG   DA  +F+E+
Sbjct: 406 LSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDS--PINNSLITMYSRCGAIVDACTVFNEI 463

Query: 68  P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTA 122
              ++  +WNAMI G+   G   ++L+LF +M +        ++  +++  A AG ++  
Sbjct: 464 KLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACAHAGLVEEG 523

Query: 123 RTLFNDM-----PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           R  F  M       R    + S++    R G  +EA+ L   +        + D  +   
Sbjct: 524 RRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMP------FKPDKAVWGA 577

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---------LVNLYGKCGDFNSANQ 228
           ++ AC          ++H+++ +  +  D+++            L N+Y   G ++ A  
Sbjct: 578 LLSAC----------RVHNNVELALVAADALIRLEPESSAPYVLLYNIYANLGQWDDAES 627

Query: 229 VLNMMKEPD 237
           V  +M+E +
Sbjct: 628 VRVLMEEKN 636


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 186/407 (45%), Gaps = 71/407 (17%)

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           + K G+   S ++F+ MP++N  +WN +I G+   G+ K+A  LF  M  R A+ W  MI
Sbjct: 10  YAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMI 69

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             + R+G    A R F ++ S+L                                     
Sbjct: 70  DGFARSGDTETARRFFDDVPSELR------------------------------------ 93

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
               + V  + +V+ Y +  +  +A +V   M + + F  S++ISGY   G + +AR +F
Sbjct: 94  ----NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIF 149

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           DR    + V WNS+ISGY  N    EAL  F KM+  G   D  T+ASVLSACS LG L+
Sbjct: 150 DRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLD 209

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK++H      G+  +  V + L+D Y+K                              
Sbjct: 210 AGKKIHHMMNHKGIKLNQFVLNGLVDMYAK------------------------------ 239

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG + +A+ IF  M +++   WNSMI G + +G   EAL+ F  M       D+ +  S
Sbjct: 240 -CGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLS 298

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           V+SACA+   +  G ++F+R+   GL +       L+D   + G IK
Sbjct: 299 VLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIK 345



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 36/324 (11%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
            ++  + R G+   A   FD++P   RN  +W  M++G+ +    E + ++F  MPQ+N 
Sbjct: 67  EMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNF 126

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           F+W+ +ISG+ K G +K AR++F+ +P RN + WNS+I  Y +NGF+ EA+  F ++ + 
Sbjct: 127 FAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQA- 185

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             E  + D   +A+V+ AC+ L  L+ GK+IH  +   G+  +  + + LV++Y KCGD 
Sbjct: 186 --EGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDL 243

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            +A  +   M   +  C +++ISG+A  G                               
Sbjct: 244 ANARLIFEGMAHRNRACWNSMISGFAIHG------------------------------- 272

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +  EAL  F +M  +    D  T  SVLSAC+  GF+  G ++     K G+   +    
Sbjct: 273 QSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYG 332

Query: 344 ALLDTYSKRGMPSDACKLFSELKV 367
            L+D   + G   +A  L   + V
Sbjct: 333 CLIDLLGRAGRIKEAYDLIKRMPV 356



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           ++L+  YA CG + D+R+VFD   + ++V WN+MI GY+ N +   A+LLF KM     +
Sbjct: 4   TSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS----I 59

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
             A T   ++   +  G  E  ++          + +V+  + ++D Y++      A ++
Sbjct: 60  RTAVTWIEMIDGFARSGDTETARRFFDDVPSE--LRNVVTWTVMVDGYARNAEMEAAREV 117

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           F  +   +    ++MI+ Y   G +++A+ IF  +P ++L++WNS+I G +QNG   EAL
Sbjct: 118 FEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEAL 177

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
           + F  M       D+ ++ASV+SAC+ +  L+ G+++   +   G+  +Q +   LVD Y
Sbjct: 178 EAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMY 237

Query: 482 CKCG 485
            KCG
Sbjct: 238 AKCG 241



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 49/279 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +A +L +C+    +  GK++H     KGI LN    + N L+ MY +CG+  +A L+F+ 
Sbjct: 195 IASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQF--VLNGLVDMYAKCGDLANARLIFEG 252

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTA 122
           M  RN   WN+MI GF   G  +++L+ F  M       ++ ++  ++S  A  G +   
Sbjct: 253 MAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAG 312

Query: 123 RTLFNDMPRRNAIA----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             +F+ M +         +  +I    R G  +EA  L K +       ++ +  +   +
Sbjct: 313 LEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMP------VKPNDVVWGAL 366

Query: 179 IGACADLAALEYGKQIHSHI------LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           +GAC     +E   ++   I      + +G D   VL   L N+Y     +  A ++   
Sbjct: 367 LGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVL---LSNIYAASDRWEKAEKM--- 420

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                               +M  A + F +T+  SS+M
Sbjct: 421 --------------------RMEMANKGFQKTSGCSSIM 439


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 216/482 (44%), Gaps = 70/482 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +     ++  G+Q+H   +K G+  ++      L+ MY +C    DA  +FD +   
Sbjct: 166 VLSTSARETNVEFGRQIHCSMIKMGLERNSY-CGGALVDMYAKCDRLGDAQRVFDGIVDP 224

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           N   W  +  G++K G  E+++ +F  M     + +  ++  +I+ +   G+LK AR LF
Sbjct: 225 NTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLF 284

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
            +MP  + +AWN MI  + + G    A+  F  +    V+  +     L +V+ A   +A
Sbjct: 285 GEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRS---TLGSVLSAIGIVA 341

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            L+ G  +H+  +  GL  +  +GSSLV++Y KC    +A +V   ++E +D   +A+I 
Sbjct: 342 NLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIR 401

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GYA+                               N E  + + LF  M+ +G   D  T
Sbjct: 402 GYAH-------------------------------NGESHKVMELFMDMKSSGYNIDDFT 430

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
             S+LS C+    LE G Q H    K  +  ++ V +AL+D Y+K G   DA ++F    
Sbjct: 431 FTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEH-- 488

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                                        M ++  +SWN++I G  Q+ +  EA DLF  
Sbjct: 489 -----------------------------MCDRDNVSWNTIIGGYVQDENESEAFDLFMR 519

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           MN   +  D   LAS + AC N+  L  G+QV       GLD      +SL+D Y KCG 
Sbjct: 520 MNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGI 579

Query: 487 IK 488
           I+
Sbjct: 580 IE 581



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 219/504 (43%), Gaps = 84/504 (16%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S  +G++++ H     +L +   I   LL++ +       +  +FDEMP R   +     
Sbjct: 26  STELGRRVYGH-----VLPNHDQIHQGLLEICLEQCKLFKSRKVFDEMPHRLALA----- 75

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
              +++G    S  L   +  +     N ++  +AK  ++  A   FN +  ++  AWNS
Sbjct: 76  ---LRIGKAVHSKSLILGIDSEGRLG-NAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNS 130

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           M+  Y   G   + +R F  L  +L+     + F  + V+   A    +E+G+QIH  ++
Sbjct: 131 MLSMYSSIGQPGKVLRSFVSLFENLIFP---NKFTFSIVLSTSARETNVEFGRQIHCSMI 187

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG------- 252
             GL+ +S  G +LV++Y KC     A +V + + +P+  C + L SGY   G       
Sbjct: 188 KMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVI 247

Query: 253 ----------------------------KMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                       K+ DAR +F        V WN MISG+     
Sbjct: 248 VFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGC 307

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           +  A+  F  MR++ V    STL SVLSA   +  L+ G  VH  A K+G+  ++ V S+
Sbjct: 308 EIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSS 367

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  YSK                               C ++E A  +F  +  ++ + W
Sbjct: 368 LVSMYSK-------------------------------CEKMEAAAKVFEALEERNDVLW 396

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N+MI G + NG   + ++LF +M      +D F+  S++S CA    LE+G Q  + +  
Sbjct: 397 NAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIK 456

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
             L  +  +  +LVD Y KCG ++
Sbjct: 457 KKLTKNLFVGNALVDMYAKCGALE 480



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 217/521 (41%), Gaps = 106/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +     ++ +G  +H   +K G L S + + + L+ MY +C     A  +F+ +
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLG-LASNIYVGSSLVSMYSKCEKMEAAAKVFEAL 388

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
             RN   WNAMI G+   G   K ++LF  M                             
Sbjct: 389 EERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGS 448

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       KN F  N L+  +AK G L+ AR +F  M  R+ ++WN++I  YV++ 
Sbjct: 449 QFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDE 508

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA  LF  +NS     +  D   LA+ + AC ++  L  GKQ+H   +  GLD    
Sbjct: 509 NESEAFDLFMRMNSC---GIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLH 565

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            GSSL+++Y KCG    A +V + M E     ++ALI+GY                    
Sbjct: 566 TGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGY-------------------- 605

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                       S N   EA++LF +M   GV     T A+++ AC     L  G Q HG
Sbjct: 606 ------------SQNNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHG 653

Query: 329 HACKVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
              K G   +   +  +LL  Y      ++AC LFSEL    +I+L              
Sbjct: 654 QIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVL-------------- 699

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                           W  M+ G SQNG   EAL  +  M       D+ +  +V+  C+
Sbjct: 700 ----------------WTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCS 743

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            +SSL  G  + + +  +  D D++ S +L+D Y KCG +K
Sbjct: 744 VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMK 784



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 208/475 (43%), Gaps = 106/475 (22%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----- 101
           ++  Y+  G   DA LLF EMP  +  +WN MI G  K G +  +++ F  M +      
Sbjct: 267 VINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKST 326

Query: 102 ----------------------------------NDFSWNMLISGFAKAGELKTARTLFN 127
                                             N +  + L+S ++K  +++ A  +F 
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            +  RN + WN+MI  Y  NG + + + LF ++ S        D F   +++  CA    
Sbjct: 387 ALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSS---GYNIDDFTFTSLLSTCAVSHD 443

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE G Q HS I+   L  +  +G++LV++Y K                            
Sbjct: 444 LEMGSQFHSIIIKKKLTKNLFVGNALVDMYAK---------------------------- 475

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
              CG + DAR++F+   D  +V WN++I GY+ +  ++EA  LF +M   G++ D + L
Sbjct: 476 ---CGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACL 532

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           AS L AC+++  L  GKQVH  + K G+   +   S+L+D YSK G+  DA K+FS +  
Sbjct: 533 ASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPE 592

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           +  + +N +I  YS    +E+A  +F+ M              L++  +P E        
Sbjct: 593 WSVVSMNALIAGYSQ-NNLEEAVVLFQEM--------------LTKGVNPSE-------- 629

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDFY 481
                     + A+++ AC    SL LG Q   ++   G  S+ + +  SL+  Y
Sbjct: 630 ---------ITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLY 675



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 187/427 (43%), Gaps = 76/427 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C   H + +G Q H   +KK  L   L + N L+ MY +CG   DA  +F+ M  R
Sbjct: 434 LLSTCAVSHDLEMGSQFHSIIIKKK-LTKNLFVGNALVDMYAKCGALEDARQIFEHMCDR 492

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS------------------------- 105
           +  SWN +I G+++  ++ ++  LF  M      S                         
Sbjct: 493 DNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVH 552

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + LI  ++K G ++ AR +F+ MP  + ++ N++I  Y +N    
Sbjct: 553 CLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-E 611

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EAV LF+E+   L + +       AT++ AC    +L  G Q H  I+  G         
Sbjct: 612 EAVVLFQEM---LTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWG--------- 659

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-V 270
                      F+S  + L +          +L+  Y N  +M +A  +F   +   S V
Sbjct: 660 -----------FSSEGEYLGI----------SLLGLYMNSRRMAEACALFSELSSPKSIV 698

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           +W  M+SG+  N    EAL  + +MR +G L D +T  +VL  CS L  L  G+ +H   
Sbjct: 699 LWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLI 758

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-LNTMITVYSSCGRIEDA 389
             +    D + ++ L+D Y+K G    + ++F E++    ++  N++I  Y+  G  EDA
Sbjct: 759 FHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDA 818

Query: 390 KHIFRTM 396
             IF +M
Sbjct: 819 LKIFDSM 825



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 159/361 (44%), Gaps = 78/361 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L++C   H ++ GKQ+H   +K G L+  L   + L+ MY +CG   DA  +F  M
Sbjct: 532 LASTLKACTNVHGLYQGKQVHCLSVKCG-LDRVLHTGSSLIDMYSKCGIIEDARKVFSSM 590

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------N 102
           P  +  S NA+I G+ +  + E+++ LF  M  K                          
Sbjct: 591 PEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGT 649

Query: 103 DFSWNMLISGFAKAGE---------------LKTARTLFNDMPRRNAIA-WNSMIHCYVR 146
            F   ++  GF+  GE               +  A  LF+++    +I  W  M+  + +
Sbjct: 650 QFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQ 709

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NGF  EA++ +KE+  D       D     TV+  C+ L++L  G+ IHS I     D D
Sbjct: 710 NGFYEEALKFYKEMRHDGA---LPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLD 766

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            +  ++L+++Y                               A CG M  + +VFD    
Sbjct: 767 ELTSNTLIDMY-------------------------------AKCGDMKSSSQVFDEMRR 795

Query: 267 TSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            S+V+ WNS+I+GY  N    +AL +F  MR++ ++ D  T   VL+ACS  G +  G++
Sbjct: 796 RSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRK 855

Query: 326 V 326
           +
Sbjct: 856 I 856


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 230/519 (44%), Gaps = 93/519 (17%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIA--NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
           +++GKQLH H  K G     LP A  N L+ MY +CG+   A  +FDE+  R+  SWN+M
Sbjct: 101 LNLGKQLHAHVFKFG---QALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSM 157

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKN------------------------------------ 102
           I    +    E ++ LF +M  +N                                    
Sbjct: 158 INAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG 217

Query: 103 ---DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
               F+ N L++ +AK G +  A+TLF+    ++ ++WN++I    +N    EA+     
Sbjct: 218 DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLY--- 274

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYG 218
           L+  L   ++ +   LA+V+ AC+ L  L  GK+IH+ +L+N  L  +S +G +LV++  
Sbjct: 275 LHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDM-- 332

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
                                        Y NC +    R VFD     +  +WN+MI+G
Sbjct: 333 -----------------------------YCNCKQPEKGRLVFDGMFRRTIAVWNAMIAG 363

Query: 279 YISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           Y+ N  D EA+ LF +M    G+  ++ TL+SVL AC         + +H    K G   
Sbjct: 364 YVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEK 423

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D  V +AL+D YS+ G    A  +F  +   D +  NTMIT Y  CGR +DA ++   M 
Sbjct: 424 DKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQ 483

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
                          Q    I   D + +     L+ +  +L +V+  CA +++L  G++
Sbjct: 484 R-------------GQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKE 530

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           + A      L  D  + ++LVD Y KCG + +      Q
Sbjct: 531 IHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQ 569



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 198/474 (41%), Gaps = 106/474 (22%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +GKQ+H   L+ G   +     N L+ MY + G   +A  LFD    ++  SWN +I   
Sbjct: 205 LGKQVHAFVLRNGDWRTF--TNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSL 262

Query: 83  MKLGHKEKSLQLFNVMPQ----------------------------------------KN 102
            +    E++L   +VM Q                                        +N
Sbjct: 263 SQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIEN 322

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F    L+  +    + +  R +F+ M RR    WN+MI  YVRN F  EA+ LF E+  
Sbjct: 323 SFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVF 382

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
           +L   L  ++  L++V+ AC    +    + IHS ++  G                    
Sbjct: 383 EL--GLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGF------------------- 421

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                       E D +  +AL+  Y+  G++  AR +F        V WN+MI+GY+  
Sbjct: 422 ------------EKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVC 469

Query: 283 NEDTEALLLFHKMRRN------------------GVLEDASTLASVLSACSSLGFLEHGK 324
               +AL L H M+R                    +  ++ TL +VL  C++L  L  GK
Sbjct: 470 GRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGK 529

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           ++H +A K  +  DV V SAL+D Y+K G  + +  +F ++ V + I  N +I  Y   G
Sbjct: 530 EIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHG 589

Query: 385 RIEDAKHIFRTM-----------PNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           + E+A  +FR M           PN+  +++ ++   LS +G   E L+LF  M
Sbjct: 590 KGEEALKLFRRMVEEGDNNREIRPNE--VTYIAIFASLSHSGMVDEGLNLFYTM 641



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 142/317 (44%), Gaps = 67/317 (21%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D F    V+ A A +  L  GKQ+H+H+   G    + + +SLVN+YGKCGD ++A    
Sbjct: 84  DNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAA---- 139

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                                      RRVFD  T+   V WNSMI+      E   A+ 
Sbjct: 140 ---------------------------RRVFDEITNRDDVSWNSMINAACRFEEWELAVH 172

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSL--GFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           LF  M    V   + TL SV  ACS+L  G L  GKQVH    + G              
Sbjct: 173 LFRLMLLENVGPTSFTLVSVAHACSNLINGLLL-GKQVHAFVLRNG-------------- 217

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
                              + T   N ++T+Y+  GR+ +AK +F    +K L+SWN++I
Sbjct: 218 ------------------DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTII 259

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-L 467
             LSQN    EAL     M +  +R +  +LASV+ AC+++  L  G+++ A V +   L
Sbjct: 260 SSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDL 319

Query: 468 DSDQIISTSLVDFYCKC 484
             +  +  +LVD YC C
Sbjct: 320 IENSFVGCALVDMYCNC 336



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 193/463 (41%), Gaps = 123/463 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L +C+    +  GK++H   L    L     +   L+ MY  C  P    L+FD M
Sbjct: 290 LASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGM 349

Query: 68  PRRNCFSWNAMIEGFMK-----------------LGHKEKSLQLFNVMP----------- 99
            RR    WNAMI G+++                 LG    S+ L +V+P           
Sbjct: 350 FRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDK 409

Query: 100 ------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                       +K+ +  N L+  +++ G ++ AR++F  M R++ ++WN+MI  YV  
Sbjct: 410 EGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVC 469

Query: 148 GFAREAVRLFKELNSDLVER---------------LQCDAFILATVIGACADLAALEYGK 192
           G   +A+ L  ++     E                L+ ++  L TV+  CA LAAL  GK
Sbjct: 470 GRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGK 529

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           +IH++ +   L  D  +GS+LV++Y KCG                  CL           
Sbjct: 530 EIHAYAVKQMLSKDVAVGSALVDMYAKCG------------------CL----------- 560

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
             N +R VF++ +  + + WN +I  Y  + +  EAL LF +M   G             
Sbjct: 561 --NLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEG------------- 605

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
                   ++ +++           + +   A+  + S  GM  +   LF  +K    I 
Sbjct: 606 --------DNNREIR---------PNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIE 648

Query: 373 LNT-----MITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMI 408
             +     ++ +    G+IE+A ++ +TMP+  K + +W+S++
Sbjct: 649 PTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLL 691



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 33/202 (16%)

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +A+  +  M   GV  D     +VL A + +  L  GKQ+H H  K G      V ++L+
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           + Y K G    A ++F E+   D +  N+MI         E A H+FR M          
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLM---------- 177

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN-ISSLELGEQVFARVTII 465
               L +N  P                   F+L SV  AC+N I+ L LG+QV A V   
Sbjct: 178 ----LLENVGPT-----------------SFTLVSVAHACSNLINGLLLGKQVHAFVLRN 216

Query: 466 GLDSDQIISTSLVDFYCKCGFI 487
           G D     + +LV  Y K G +
Sbjct: 217 G-DWRTFTNNALVTMYAKLGRV 237



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 404 WNSMIVGLSQNGSPI-EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           W S +   +Q+ S   +A+  + NM    +  D F+  +V+ A A I  L LG+Q+ A V
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFI 487
              G      +  SLV+ Y KCG I
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDI 136


>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 477

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 196/396 (49%), Gaps = 43/396 (10%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK-----EKSLQLFNV 97
           ++N+LL+   R   P   LL++ ++     F  +     F+             +++  V
Sbjct: 90  LSNKLLRALSRSSKPETVLLVYQKIREDGLFGLDKFSFPFILKAAAKIAALNDGMEIHGV 149

Query: 98  MPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           + +    K+ F    L+  +   G++  AR +F+ M  R+ + W++MI+ Y + G   +A
Sbjct: 150 LAKLDFYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDA 209

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           ++LF+E+ S  VE    D  +L+T+I ACA    L YGK++H  I+ N    D  L S L
Sbjct: 210 LQLFEEMRSSNVEP---DKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGL 266

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           ++LY  CG  + A ++   M   +    + ++SGY   G++ DAR +F++  +   + W+
Sbjct: 267 ISLYAGCGCMDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWS 326

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
            MISGY  +++  EAL LF++M+  G+  D  T+ SV+SAC+ LG L+  K++H    K 
Sbjct: 327 IMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKN 386

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G    + V +AL+D Y+K                               CG +E A+ +F
Sbjct: 387 GFGKALSVNNALIDMYAK-------------------------------CGCLEAARAVF 415

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             M  +++ISW SMI   + +G    AL+ F  M +
Sbjct: 416 EKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKE 451



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 137/249 (55%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
           D F  + L+  Y  CGK+ +AR VFD+ +    V W++MI+GY       +AL LF +MR
Sbjct: 158 DPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEMR 217

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
            + V  D   L++++SAC+    L +GK+VH    +     D  + S L+  Y+  G   
Sbjct: 218 SSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCMD 277

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
            A +LF+ +   + ++  TM++ Y   GRIEDA+ IF  M  K LI W+ MI G +++  
Sbjct: 278 MAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQ 337

Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
           P EAL LF  M  L +  D+ ++ SVISACA++  L+  +++   V   G      ++ +
Sbjct: 338 PQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVNNA 397

Query: 477 LVDFYCKCG 485
           L+D Y KCG
Sbjct: 398 LIDMYAKCG 406



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 34/216 (15%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF  M  +N      ++SG+ K G ++ AR +FN M  ++ I W+ MI  Y  +   +E
Sbjct: 281 ELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQE 340

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF E+    +E    D   + +VI ACA L  L+  K+IH  +  NG          
Sbjct: 341 ALHLFNEMQFLGIEP---DEVTMLSVISACAHLGVLDQAKRIHMFVDKNG---------- 387

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
               +GK    N+A                 LI  YA CG +  AR VF++    + + W
Sbjct: 388 ----FGKALSVNNA-----------------LIDMYAKCGCLEAARAVFEKMQIRNVISW 426

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
            SMI+ +  + +   AL  FH+M+   V  +A T  
Sbjct: 427 TSMINAFAIHGDANSALNYFHQMKEENVEPNAVTFP 462



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 32/236 (13%)

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSA 313
           N A  VF         + N ++     +++    LL++ K+R +G+   D  +   +L A
Sbjct: 74  NYALSVFTHIPTPHPTLSNKLLRALSRSSKPETVLLVYQKIREDGLFGLDKFSFPFILKA 133

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            + +  L  G ++HG   K             LD Y                   D  L 
Sbjct: 134 AAKIAALNDGMEIHGVLAK-------------LDFYK------------------DPFLQ 162

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
             ++ +Y  CG+I +A+ +F  M  + +++W++MI G  Q G   +AL LF  M   ++ 
Sbjct: 163 TGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEMRSSNVE 222

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            DK  L+++ISACA   +L  G++V   +       D  + + L+  Y  CG + M
Sbjct: 223 PDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCMDM 278



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 39/165 (23%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP- 99
           L ++  ++  Y++ G   DA L+F++M  ++   W+ MI G+ +    +++L LFN M  
Sbjct: 291 LVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQF 350

Query: 100 ---------------------------------QKNDFSW-----NMLISGFAKAGELKT 121
                                             KN F       N LI  +AK G L+ 
Sbjct: 351 LGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKCGCLEA 410

Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           AR +F  M  RN I+W SMI+ +  +G A  A+  F ++  + VE
Sbjct: 411 ARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEENVE 455



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
            K++H+ F+ K      L + N L+ MY +CG    A  +F++M  RN  SW +MI  F 
Sbjct: 376 AKRIHM-FVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMINAFA 434

Query: 84  KLGHKEKSLQLFNVMPQKN 102
             G    +L  F+ M ++N
Sbjct: 435 IHGDANSALNYFHQMKEEN 453


>gi|255558198|ref|XP_002520126.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540618|gb|EEF42181.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 593

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 213/429 (49%), Gaps = 46/429 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C   +S    + +H H +K G  N  +  A  L  MYM+     DA+ +FDEMP R
Sbjct: 142 LLKACAKLNSPLQAQIIHTHLIKTG-FNLNIYTATALTSMYMQLALLPDAMKVFDEMPDR 200

Query: 71  NCFSWNAMIEGFMK----------------LGHKEKSLQLFNVMPQKN--DFSWNM---- 108
           N  S+NA I GF +                 G +  S+ + +V+P  +  D S  M    
Sbjct: 201 NQASFNATISGFSQKGCCMEALIVFKEMAFCGFRPNSVTIASVLPACDSVDLSVQMHCCA 260

Query: 109 --------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                         L++ ++  G L  A  +F +MP R  +++N+ +   + NG     +
Sbjct: 261 IKLGVEMDVYVATSLVTTYSGCGHLTLATKVFGEMPNRTVVSYNAFVSGLLHNGVTNVVL 320

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
           ++FK++       L+ ++  L +VI AC+ L  +++G Q+H  +    +  D+++G+SLV
Sbjct: 321 KVFKDMRE--YSTLKPNSLTLVSVIAACSTLLYIQFGMQVHVFLKKTQMGCDTMVGTSLV 378

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDF-CLSALISGYANCGKMNDARRVFD----RTTDTSS 269
           ++Y KCG +  A  V N M +  +    +++I+G     +  +A  +F+    +  +  S
Sbjct: 379 DMYSKCGYWKWAYNVFNEMNDNKNLITWNSMIAGMMLNAQSQNAIELFELLESQGLEPDS 438

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WNSMISG+   ++  EA   F KM+ +G++    ++ S+L+AC+SL  L+ GK++HGH
Sbjct: 439 ATWNSMISGFEQLDKGVEAFKFFKKMQLSGMVPSLKSVTSLLAACASLTALQCGKEIHGH 498

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS--ELKVYDTILLNTMITVYSSCGRIE 387
             +  +  D  +A+ L+D Y K G      ++F   E+K  D  + N +I+ Y+  G  E
Sbjct: 499 VVRTNMNFDEFMATGLIDMYMKCGFSLWGQRVFDQFEIKPKDPAIWNALISGYARNGENE 558

Query: 388 DAKHIFRTM 396
               +F  M
Sbjct: 559 SVFEVFDQM 567



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 207/425 (48%), Gaps = 49/425 (11%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-----LISGFAKAGELKTARTLFN 127
           F++ A+++   KL    ++ Q+ +    K  F+ N+     L S + +   L  A  +F+
Sbjct: 137 FTFPALLKACAKLNSPLQA-QIIHTHLIKTGFNLNIYTATALTSMYMQLALLPDAMKVFD 195

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +MP RN  ++N+ I  + + G   EA+ +FKE+        + ++  +A+V+ AC    +
Sbjct: 196 EMPDRNQASFNATISGFSQKGCCMEALIVFKEMA---FCGFRPNSVTIASVLPACD---S 249

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           ++   Q+H   +  G++ D  + +SLV                               + 
Sbjct: 250 VDLSVQMHCCAIKLGVEMDVYVATSLV-------------------------------TT 278

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-T 306
           Y+ CG +  A +VF    + + V +N+ +SG + N      L +F  MR    L+  S T
Sbjct: 279 YSGCGHLTLATKVFGEMPNRTVVSYNAFVSGLLHNGVTNVVLKVFKDMREYSTLKPNSLT 338

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           L SV++ACS+L +++ G QVH    K  +  D +V ++L+D YSK G    A  +F+E+ 
Sbjct: 339 LVSVIAACSTLLYIQFGMQVHVFLKKTQMGCDTMVGTSLVDMYSKCGYWKWAYNVFNEMN 398

Query: 367 -VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEAL 421
              + I  N+MI       + ++A  +F  + ++ L     +WNSMI G  Q    +EA 
Sbjct: 399 DNKNLITWNSMIAGMMLNAQSQNAIELFELLESQGLEPDSATWNSMISGFEQLDKGVEAF 458

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
             F  M    +     S+ S+++ACA++++L+ G+++   V    ++ D+ ++T L+D Y
Sbjct: 459 KFFKKMQLSGMVPSLKSVTSLLAACASLTALQCGKEIHGHVVRTNMNFDEFMATGLIDMY 518

Query: 482 CKCGF 486
            KCGF
Sbjct: 519 MKCGF 523



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 158/345 (45%), Gaps = 69/345 (20%)

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V NGF +EA+ L   L+S  +   Q   F    ++ ACA L +    + IH+H++  G +
Sbjct: 112 VANGFYKEAISLHSRLHSASIHPHQ---FTFPALLKACAKLNSPLQAQIIHTHLIKTGFN 168

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
                    +N+Y                        +AL S Y     + DA +VFD  
Sbjct: 169 ---------LNIYTA----------------------TALTSMYMQLALLPDAMKVFDEM 197

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            D +   +N+ ISG+       EAL++F +M   G   ++ T+ASVL AC S+       
Sbjct: 198 PDRNQASFNATISGFSQKGCCMEALIVFKEMAFCGFRPNSVTIASVLPACDSVDL---SV 254

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+H  A K+GV  DV VA++L                               +T YS CG
Sbjct: 255 QMHCCAIKLGVEMDVYVATSL-------------------------------VTTYSGCG 283

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVI 443
            +  A  +F  MPN++++S+N+ + GL  NG     L +F +M +   L+ +  +L SVI
Sbjct: 284 HLTLATKVFGEMPNRTVVSYNAFVSGLLHNGVTNVVLKVFKDMREYSTLKPNSLTLVSVI 343

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +AC+ +  ++ G QV   +    +  D ++ TSLVD Y KCG+ K
Sbjct: 344 AACSTLLYIQFGMQVHVFLKKTQMGCDTMVGTSLVDMYSKCGYWK 388



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 136/311 (43%), Gaps = 67/311 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++ +C+T   I  G Q+H+ FLKK  +     +   L+ MY +CG    A  +F+EM
Sbjct: 339 LVSVIAACSTLLYIQFGMQVHV-FLKKTQMGCDTMVGTSLVDMYSKCGYWKWAYNVFNEM 397

Query: 68  -PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
              +N  +WN+MI G M     + +++LF                      EL  ++ L 
Sbjct: 398 NDNKNLITWNSMIAGMMLNAQSQNAIELF----------------------ELLESQGLE 435

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN-SDLVERLQCDAFILATVIGACADL 185
            D     +  WNSMI  + +     EA + FK++  S +V  L+     + +++ ACA L
Sbjct: 436 PD-----SATWNSMISGFEQLDKGVEAFKFFKKMQLSGMVPSLKS----VTSLLAACASL 486

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            AL+ GK+IH H++   ++FD  + + L+++                             
Sbjct: 487 TALQCGKEIHGHVVRTNMNFDEFMATGLIDM----------------------------- 517

Query: 246 SGYANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
             Y  CG     +RVFD+         +WN++ISGY  N E+     +F +M    V  +
Sbjct: 518 --YMKCGFSLWGQRVFDQFEIKPKDPAIWNALISGYARNGENESVFEVFDQMLEEKVEPN 575

Query: 304 ASTLASVLSAC 314
            +T   VL+ C
Sbjct: 576 LTTFTGVLTVC 586



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 34/214 (15%)

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I   ++N    EA+ L  ++    +     T  ++L AC+ L      + +H H  K G 
Sbjct: 108 IVKLVANGFYKEAISLHSRLHSASIHPHQFTFPALLKACAKLNSPLQAQIIHTHLIKTGF 167

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             ++  A+AL   Y +  +  DA K+F E                               
Sbjct: 168 NLNIYTATALTSMYMQLALLPDAMKVFDE------------------------------- 196

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MP+++  S+N+ I G SQ G  +EAL +F  M     R +  ++ASV+ AC    S++L 
Sbjct: 197 MPDRNQASFNATISGFSQKGCCMEALIVFKEMAFCGFRPNSVTIASVLPAC---DSVDLS 253

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
            Q+      +G++ D  ++TSLV  Y  CG + +
Sbjct: 254 VQMHCCAIKLGVEMDVYVATSLVTTYSGCGHLTL 287


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 214/474 (45%), Gaps = 103/474 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H   +K G           L+ MY R G   DA  +FD   +R
Sbjct: 89  LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA-HTSLISMYARNGRLEDARKVFDXSSQR 147

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S  A                               LI+G+A  G++++AR +F+ + 
Sbjct: 148 DVVSCTA-------------------------------LITGYASRGDVRSARKVFDXIT 176

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++WN+MI  YV N    EA+ LFKE+   +   ++ D   L +V+ ACA   ++E 
Sbjct: 177 ERDVVSWNAMITGYVENCGYEEALELFKEM---MRTNVRPDEGTLVSVLSACAQSGSIEL 233

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G++IH+ +     D     GSSL              +++N           A I  Y+ 
Sbjct: 234 GREIHTLV-----DDHHGFGSSL--------------KIVN-----------AFIGLYSK 263

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG +  A  +F+  +    V WN++I GY   N   EALLLF +M R+G   +  T+ SV
Sbjct: 264 CGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 323

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG ++ G+ +H +  K   GV +   + ++L+D Y+K                 
Sbjct: 324 LPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAK----------------- 366

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A  +F +M +KSL SWN+MI G + +G    A DLF  M 
Sbjct: 367 --------------CGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMR 412

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           K  +  D  +L  ++SAC++   L+LG  +F  VT      D  I+  L  + C
Sbjct: 413 KNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVT-----QDYNITPKLEHYGC 461



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 188/383 (49%), Gaps = 57/383 (14%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-------- 170
           L  A ++F      N + WN+M+      G A          +SDLV  L+         
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTML-----RGLAS---------SSDLVSPLEMYVRMVSXG 78

Query: 171 ---DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
              +A+    ++ +CA     E G+QIH+ ++  G + D    +SL+++Y + G    A 
Sbjct: 79  HVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDAR 138

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           +V +   + D    +ALI+GYA+ G +  AR+VFD  T+   V WN+MI+GY+ N    E
Sbjct: 139 KVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEE 198

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           AL LF +M R  V  D  TL SVLSAC+  G +E G+++H                 L+D
Sbjct: 199 ALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH----------------TLVD 242

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            +   G         S LK+     +N  I +YS CG +E A  +F  +  K ++SWN++
Sbjct: 243 DHHGFG---------SSLKI-----VNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTL 288

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTII 465
           I G +      EAL LF  M +     +  ++ SV+ ACA++ ++++G    V+    + 
Sbjct: 289 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK 348

Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
           G+ +   + TSL+D Y KCG I+
Sbjct: 349 GVTNGSALRTSLIDMYAKCGDIE 371



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 1/234 (0%)

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A  VF+   + + ++WN+M+ G  S+++    L ++ +M   G + +A T   +L +C+ 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
               E G+Q+H    K+G   D    ++L+  Y++ G   DA K+F      D +    +
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           IT Y+S G +  A+ +F  +  + ++SWN+MI G  +N    EAL+LF  M + ++R D+
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 437 FSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKM 489
            +L SV+SACA   S+ELG ++   V    G  S   I  + +  Y KCG +++
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269


>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
 gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 235/505 (46%), Gaps = 85/505 (16%)

Query: 4   RIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTD 59
           + DYL   RL +    +      KQLH   L   + +STL   +  RL+ +Y +  +   
Sbjct: 14  QYDYLLYGRLFKYFTDNRLPLQAKQLHARLL---LSSSTLDNYLGARLINLYSKTKHIHH 70

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-------QKNDFSW------ 106
           A  +FD++P +N FS+NA++  +    H ++++ LF+ +        Q N++S       
Sbjct: 71  ARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSLLLSSSGDLQPNNYSITCLLKS 130

Query: 107 --------------------------------NMLISGFAKAGELKTARTLFNDMPRRNA 134
                                           N LIS ++K   +  AR LF+ M  R+ 
Sbjct: 131 LSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGFARKLFDKMRERDV 190

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           + WNSMI  Y + GF +E   L++E+ +  +   + +A  + +V+ AC     L +G ++
Sbjct: 191 VTWNSMIAGYAQAGFFKECKELYREMGA--LPGFKPNAVTVLSVLQACMQSQDLVFGMEV 248

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H +I+ N ++ D ++ ++L+ LY KCG  + A ++ + M E D+    A+ISGY   G +
Sbjct: 249 HRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAHGVV 308

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           +    +F          WN++ISG + NN     + L  +M+  G   +A TL+SVL   
Sbjct: 309 DKGMELFREMKSRVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTL 368

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           S    L+ GK++HG+A K G   ++ VA+A++DTY+K G       LF            
Sbjct: 369 SYFSNLKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGF------LFG----------- 411

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
                         A+++F     +SLI W ++I   + +G    AL  F  M    ++ 
Sbjct: 412 --------------AQYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQP 457

Query: 435 DKFSLASVISACANISSLELGEQVF 459
           D  +  +V++ACA+   ++   ++F
Sbjct: 458 DHVTFTAVLAACAHCGMVDKAWEIF 482



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 185/392 (47%), Gaps = 35/392 (8%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           LI+ ++K   +  AR +F+ +P +N  ++N+++  Y  N   +E + LF  L       L
Sbjct: 58  LINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSLLLSSSGDL 117

Query: 169 QCDAFILATVIGACADLAALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           Q + + +  ++ + + L  +     GK+IH  +L  GL                      
Sbjct: 118 QPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGL---------------------- 155

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                      D F  +ALIS Y+ C  +  AR++FD+  +   V WNSMI+GY      
Sbjct: 156 ---------VEDVFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFF 206

Query: 286 TEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
            E   L+ +M    G   +A T+ SVL AC     L  G +VH +     V  DV+V +A
Sbjct: 207 KECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNA 266

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+  Y+K G    A +LF E+   D +    +I+ Y + G ++    +FR M ++ L +W
Sbjct: 267 LIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKSRVLSTW 326

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++I GL QN      +DL   M  L  R +  +L+SV+   +  S+L+ G+++      
Sbjct: 327 NAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYAVK 386

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
            G D +  ++T+++D Y K GF+   +Y   Q
Sbjct: 387 NGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQ 418



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 196/498 (39%), Gaps = 135/498 (27%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           +GK++H   L++G++     + N L+  Y +C     A  LFD+M  R+  +WN+MI G+
Sbjct: 142 LGKEIHCFVLRRGLVEDVF-VENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGY 200

Query: 83  MKLGHKEKSLQLFNVMP--------------------QKNDFSWNM-------------- 108
            + G  ++  +L+  M                     Q  D  + M              
Sbjct: 201 AQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELD 260

Query: 109 ------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
                 LI  +AK G L  AR LF++M  ++ + + ++I  Y+ +G   + + LF+E+ S
Sbjct: 261 VLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKS 320

Query: 163 -----------------------DLVERLQ-----CDAFILATVIGACADLAALEYGKQI 194
                                  DLV  +Q      +A  L++V+   +  + L+ GK+I
Sbjct: 321 RVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEI 380

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H + + NG D +  + +++++ Y K G    A  V +  KE      +A+IS +A  G  
Sbjct: 381 HGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDA 440

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           N A   FD                               +M  NG+  D  T  +VL+AC
Sbjct: 441 NSALTFFD-------------------------------EMLSNGIQPDHVTFTAVLAAC 469

Query: 315 SSLGFLE------------HGKQVHG--HACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
           +  G ++            +G Q  G  +AC VGV+              + G  S A +
Sbjct: 470 AHCGMVDKAWEIFNSMSKKYGIQPLGEHYACMVGVL-------------GRAGRLSQATE 516

Query: 361 LFSEL------KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             S +      KV+  +L    + V    G+     H+F   P  +  ++  M    SQ 
Sbjct: 517 FISTMPIEPNAKVWGALLHGASLCVDVELGKFA-CDHLFEIEPENTG-NYAIMANLYSQA 574

Query: 415 GSPIEALDLFCNMNKLDL 432
           G   EA +   N N L++
Sbjct: 575 GKWKEADEDTSNENALEI 592



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 69/301 (22%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           KQ+H+ +L++    D+ LG+ L+NLY K                                
Sbjct: 37  KQLHARLLLSSSTLDNYLGARLINLYSKTK------------------------------ 66

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
             ++ AR VFD+    ++  +N+++  Y  NN   E + LF  +  +   +      S+ 
Sbjct: 67  -HIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSLLLSSSGDLQPNNYSIT 125

Query: 312 SACSSLGFLEH------GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
               SL  L        GK++H    + G+++DV V +AL                    
Sbjct: 126 CLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENAL-------------------- 165

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                      I+ YS C  +  A+ +F  M  + +++WNSMI G +Q G   E  +L+ 
Sbjct: 166 -----------ISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYR 214

Query: 426 NMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            M  L   + +  ++ SV+ AC     L  G +V   +    ++ D ++  +L+  Y KC
Sbjct: 215 EMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKC 274

Query: 485 G 485
           G
Sbjct: 275 G 275


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/522 (25%), Positives = 235/522 (45%), Gaps = 105/522 (20%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+     L+ +C++  S+  G+++H H L       T+ + N +L MY +CG+  DA  +
Sbjct: 66  RLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTI-LNNHILSMYGKCGSLRDAREV 124

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF------------- 104
           FD MP RN  S+ ++I G+ + G   ++++L+      +++P +  F             
Sbjct: 125 FDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDV 184

Query: 105 --------------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                               + N LI+ + +  ++  A  +F  +P ++ I+W+S+I  +
Sbjct: 185 GLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGF 244

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            + GF  EA+   KE+ S  V     + +I  + + AC+ L   +YG QIH   + + L 
Sbjct: 245 SQLGFEFEALSHLKEMLSFGV--FHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELA 302

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +++ G SL ++Y +CG  NSA +V + ++ PD    + +I+G AN G  +         
Sbjct: 303 GNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYAD--------- 353

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                 EA+ +F +MR +G + DA +L S+L A +    L  G 
Sbjct: 354 ----------------------EAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGM 391

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+H +  K G + D+ V                                N+++T+Y+ C 
Sbjct: 392 QIHSYIIKWGFLADLTVC-------------------------------NSLLTMYTFCS 420

Query: 385 RIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
            +    ++F    N +  +SWN+++    Q+  P+E L LF  M   +   D  ++ +++
Sbjct: 421 DLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLL 480

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             C  ISSL+LG QV       GL  +Q I   L+D Y KCG
Sbjct: 481 RGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCG 522



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/525 (23%), Positives = 220/525 (41%), Gaps = 106/525 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C +   + +GKQLH   +K    +S L   N L+ MY+R    +DA  +F  +P +
Sbjct: 174 IIKACASSSDVGLGKQLHAQVIKLES-SSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK 232

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------------ 112
           +  SW+++I GF +LG + ++L     M     F  N  I G                  
Sbjct: 233 DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQI 292

Query: 113 ----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                                 +A+ G L +AR +F+ + R +  +WN +I     NG+A
Sbjct: 293 HGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYA 352

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EAV +F ++ S        DA  L +++ A     AL  G QIHS+I+  G   D  + 
Sbjct: 353 DEAVSVFSQMRSS---GFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVC 409

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SL+ +Y  C D                +C   L   + N               +  SV
Sbjct: 410 NSLLTMYTFCSDL---------------YCCFNLFEDFRN---------------NADSV 439

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN++++  + + +  E L LF  M  +    D  T+ ++L  C  +  L+ G QVH ++
Sbjct: 440 SWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYS 499

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G+  +  + + L+D Y+K G    A ++F  +   D +  +T+I  Y          
Sbjct: 500 LKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGY---------- 549

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                                +Q+G   EAL LF  M    +  +  +   V++AC+++ 
Sbjct: 550 ---------------------AQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVG 588

Query: 451 SLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
            +E G +++A + T  G+   +   + +VD   + G +   E ++
Sbjct: 589 LVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFI 633



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 184/422 (43%), Gaps = 79/422 (18%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C++      G Q+H   +K  +  + +     L  MY RCG    A  +FD++ R +
Sbjct: 277 LKACSSLLRPDYGSQIHGLCIKSELAGNAIA-GCSLCDMYARCGFLNSARRVFDQIERPD 335

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM-----------------PQKNDFS--------- 105
             SWN +I G    G+ ++++ +F+ M                  Q    +         
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395

Query: 106 ----W---------NMLISGFAKAGELKTARTLFNDMPRRNA--IAWNSMIHCYVRNGFA 150
               W         N L++ +    +L     LF D  R NA  ++WN+++   +++   
Sbjct: 396 YIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDF-RNNADSVSWNTILTACLQHEQP 454

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            E +RLFK +   LV   + D   +  ++  C ++++L+ G Q+H + L  GL       
Sbjct: 455 VEMLRLFKLM---LVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGL------- 504

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
                                    P+ F  + LI  YA CG +  ARR+FD   +   V
Sbjct: 505 ------------------------APEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVV 540

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH- 329
            W+++I GY  +    EAL+LF +M+  G+  +  T   VL+ACS +G +E G +++   
Sbjct: 541 SWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATM 600

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIED 388
             + G+       S ++D  ++ G  ++A +   E+K+  D ++  T+++   + G +  
Sbjct: 601 QTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHL 660

Query: 389 AK 390
           A+
Sbjct: 661 AQ 662



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 152/351 (43%), Gaps = 65/351 (18%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N  I+   ++ F REA+  F     +   +++   +I  ++I AC+   +L  G++IH H
Sbjct: 35  NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYI--SLICACSSSRSLAQGRKIHDH 92

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           IL +   +D++L + ++++YGKCG    A +V + M E +    +++I+GY+        
Sbjct: 93  ILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQ------- 145

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
                                   N +  EA+ L+ KM +  ++ D     S++ AC+S 
Sbjct: 146 ------------------------NGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASS 181

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
             +  GKQ+H    K+     +I  +AL+  Y +    SDA ++F               
Sbjct: 182 SDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVF--------------- 226

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDK 436
                             +P K LISW+S+I G SQ G   EAL     M    +   ++
Sbjct: 227 ----------------YGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNE 270

Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +   S + AC+++   + G Q+        L  + I   SL D Y +CGF+
Sbjct: 271 YIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFL 321



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 33/221 (14%)

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 322
           T  T  +M N  I+    +N   EAL  F   ++N   +    T  S++ ACSS   L  
Sbjct: 27  TIKTEELM-NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQ 85

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+++H H        D I+ + +L  Y K G   DA                        
Sbjct: 86  GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDA------------------------ 121

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
                  + +F  MP ++L+S+ S+I G SQNG   EA+ L+  M + DL  D+F+  S+
Sbjct: 122 -------REVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSI 174

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           I ACA+ S + LG+Q+ A+V  +   S  I   +L+  Y +
Sbjct: 175 IKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR 215


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 195/377 (51%), Gaps = 39/377 (10%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L++ + K G    A  +F++MP R+ IAW S++    +   + +   L    +     
Sbjct: 42  NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKT--LSVFSSVGSSS 99

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            L+ D F+ + ++ ACA+L ++++G+Q+H H +V+    D V+ SSLV++Y KCG  NSA
Sbjct: 100 GLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSA 159

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V + ++  +    +A++SGYA  G+  +A  +F      +   W ++ISG++ + +  
Sbjct: 160 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGL 219

Query: 287 EALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           EA  +F +MRR  V + D   L+S++ AC++L     G+QVHG    +G    V +++AL
Sbjct: 220 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNAL 279

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K                               C  +  AK IF  M ++ ++SW 
Sbjct: 280 IDMYAK-------------------------------CSDVIAAKDIFSRMRHRDVVSWT 308

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           S+IVG++Q+G   +AL L+ +M    ++ ++ +   +I AC+++  +E G ++F  +T  
Sbjct: 309 SLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMT-- 366

Query: 466 GLDSDQIISTSLVDFYC 482
               D  I  SL  + C
Sbjct: 367 ---KDYGIRPSLQHYTC 380



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 35/306 (11%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA    L   K +H+HI+  G+     L ++LVN+YGKC                     
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKC--------------------- 51

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                     G  + A +VFD       + W S+++     N   + L +F  +  +  L
Sbjct: 52  ----------GAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGL 101

Query: 302 E-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D    ++++ AC++LG ++HG+QVH H       +D +V S+L+D Y+K G+ + A  
Sbjct: 102 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 161

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F  ++V +TI    M++ Y+  GR E+A  +FR +P K+L SW ++I G  Q+G  +EA
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEA 221

Query: 421 LDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
             +F  M   ++D+ +D   L+S++ ACAN+++   G QV   V  +G DS   IS +L+
Sbjct: 222 FSVFTEMRRERVDI-LDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALI 280

Query: 479 DFYCKC 484
           D Y KC
Sbjct: 281 DMYAKC 286



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 66/349 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+++C    SI  G+Q+H HF+     N  + + + L+ MY +CG    A  +FD +  +
Sbjct: 111 LVKACANLGSIDHGRQVHCHFIVSEYANDEV-VKSSLVDMYAKCGLLNSAKAVFDSIRVK 169

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N  SW AM+ G+ K G KE++L+LF ++P KN +SW  LISGF ++G+            
Sbjct: 170 NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGK------------ 217

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                                EA  +F E+  + V+ L  D  +L++++GACA+LAA   
Sbjct: 218 -------------------GLEAFSVFTEMRRERVDIL--DPLVLSSIVGACANLAASIA 256

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+H  ++  G D    + ++L+++Y KC D  +A  + + M+  D    ++LI G A 
Sbjct: 257 GRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQ 316

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+                                 +AL L+  M  +GV  +  T   +
Sbjct: 317 HGQAE-------------------------------KALALYDDMVSHGVKPNEVTFVGL 345

Query: 311 LSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDA 358
           + ACS +GF+E G+++     K  G+   +   + LLD   + G+  +A
Sbjct: 346 IYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEA 394



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%)

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-NGSPIEALDLFCNMNKL 430
           L NT++ VY  CG    A  +F  MP++  I+W S++  L+Q N S           +  
Sbjct: 40  LANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSS 99

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            LR D F  ++++ ACAN+ S++ G QV     +    +D+++ +SLVD Y KCG +
Sbjct: 100 GLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLL 156


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 173/345 (50%), Gaps = 33/345 (9%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL--NSDLVERLQCDAFI 174
            E + A  LF  +   NA  +N+MI  Y  N     A+ ++K++  +S     +  D F 
Sbjct: 60  AETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFT 119

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
              V+ +CA L   + GKQ+H H+   G   ++V+ +SLV +Y KC   + A++V   M 
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMT 179

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           E D    + LISG+   G+M  AR +F+   D +   W +++SGY       +AL  F +
Sbjct: 180 ERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+  G+  D  +L SVL AC+ LG LE GK +H +A K G + ++ V +AL++ Y+K   
Sbjct: 240 MQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAK--- 296

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                       CG I++ + +F  M  + +ISW++MIVGL+ +
Sbjct: 297 ----------------------------CGSIDEGRRLFDQMNERDVISWSTMIVGLANH 328

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           G   EA++LF  M K  +  +  +   ++SACA+   L  G + F
Sbjct: 329 GRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYF 373



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 39/319 (12%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           I   ++  C ++  L   K+IH+HI+   L   S L + +V                   
Sbjct: 16  IFVPILKNCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMV------------------- 53

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
               D C     + YAN         +F R  D ++ ++N+MI  Y  N     A+ ++ 
Sbjct: 54  ----DVCNHHAETEYANL--------LFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYK 101

Query: 294 KM-----RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           +M       N +  D  T   V+ +C+ L   + GKQVHGH  K G   + +V ++L++ 
Sbjct: 102 QMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEM 161

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K     DA K+F E+   D +  NT+I+ +   G++  A+ IF  M +K++ SW +++
Sbjct: 162 YVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIV 221

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G ++ G   +AL+ F  M  + +  D+ SL SV+ ACA + +LELG+ +       G  
Sbjct: 222 SGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFL 281

Query: 469 SDQIISTSLVDFYCKCGFI 487
            +  +  +L++ Y KCG I
Sbjct: 282 RNICVCNALIEMYAKCGSI 300



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 140/313 (44%), Gaps = 66/313 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC       +GKQ+H H  K G  ++T+ + N L++MY++C +  DA  +F+E    
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTV-VENSLVEMYVKCDSLDDAHKVFEE---- 177

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                                      M +++  SWN LISG  + G+++ AR +F +M 
Sbjct: 178 ---------------------------MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +   +W +++  Y R G   +A+  F+ +    +E    D   L +V+ ACA L ALE 
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP---DEISLVSVLPACAQLGALEL 267

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH +    G   +  + ++L+ +Y KCG  +   ++ + M E D    S +I G AN
Sbjct: 268 GKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLAN 327

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+ +                               EA+ LF +M++  +  +  T   +
Sbjct: 328 HGRAH-------------------------------EAIELFQEMQKAKIEPNIITFVGL 356

Query: 311 LSACSSLGFLEHG 323
           LSAC+  G L  G
Sbjct: 357 LSACAHAGLLNEG 369



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 112/237 (47%), Gaps = 19/237 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++ +GK +H +  K G L + + + N L++MY +CG+  +   LFD+M
Sbjct: 252 LVSVLPACAQLGALELGKWIHFYADKAGFLRN-ICVCNALIEMYAKCGSIDEGRRLFDQM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             R+  SW+ MI G    G   ++++LF  M     + N  ++  L+S  A AG L    
Sbjct: 311 NERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGL 370

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M R   I      +  +++    +G   +A+ L K++       ++ D+ I  ++
Sbjct: 371 RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMP------MKPDSAIWGSL 424

Query: 179 IGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           + +C   + LE       H+L +   D  + +   L NLY   G ++  +++  +M+
Sbjct: 425 LSSCRSHSNLEIAVIAMEHLLELEPADTGNYV--LLSNLYADLGKWDGVSRMRKLMR 479


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 218/481 (45%), Gaps = 100/481 (20%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           +  N ++    K G    + +LF+ MPQK+++SWN +IS +   G L  AR LF+    +
Sbjct: 66  YQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCK 125

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           ++I W+S+I  Y + G   EA  LF+ +    +E  +   F L +V+  C+ L  ++ G+
Sbjct: 126 SSITWSSIISGYCKFGCKVEAFDLFRSMR---LEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
            IH  ++ NG + +  + + LV++Y KC   + A  +   ++                  
Sbjct: 183 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLE------------------ 224

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                   FDR    + V+W +M++GY  N +  +A+  F  M   GV  +  T  ++L+
Sbjct: 225 --------FDRK---NHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILT 273

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS---------------------- 350
           ACSS+     G+QVHG   K G   +V V SAL+D Y+                      
Sbjct: 274 ACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVS 333

Query: 351 ---------KRGMPSDACKLFSEL-----KVYD--------------------------- 369
                    + G+  +A +LF  +     K+ D                           
Sbjct: 334 WNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKT 393

Query: 370 -----TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                 ++ N ++ +Y+  G ++ A  +F  M  K +ISW S++ G +QN S  E+L +F
Sbjct: 394 GFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIF 453

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           C+M    +  D+F +AS++SACA ++ LE G+QV       GL   Q +  SLV  Y KC
Sbjct: 454 CDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKC 513

Query: 485 G 485
           G
Sbjct: 514 G 514



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 126/526 (23%), Positives = 226/526 (42%), Gaps = 112/526 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD-- 65
           L  +L+ C++   I  G+ +H   +K G   +   +   L+ MY +C   ++A  LF   
Sbjct: 165 LGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVF-VVTGLVDMYAKCKCVSEAEFLFKGL 223

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------ 101
           E  R+N   W AM+ G+ + G   K+++ F  M  +                        
Sbjct: 224 EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCF 283

Query: 102 ---------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                          N +  + L+  +AK G+LK A+ +   M   + ++WNS++  +VR
Sbjct: 284 GEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVR 343

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G   EA+RLFK ++      ++ D +   +V+  C  + ++   K +H  I+  G +  
Sbjct: 344 HGLEEEALRLFKNMHG---RNMKIDDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENY 398

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            ++ ++LV++Y K GD                               M+ A  VF++  +
Sbjct: 399 KLVSNALVDMYAKTGD-------------------------------MDCAYTVFEKMLE 427

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              + W S+++GY  NN   E+L +F  MR  GV  D   +AS+LSAC+ L  LE GKQV
Sbjct: 428 KDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQV 487

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    K G+     V ++L+  Y+K G   DA  +F  ++V D                 
Sbjct: 488 HLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKD----------------- 530

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
                         +I+W ++IVG +QNG    +L  +  M     R D  +   ++ AC
Sbjct: 531 --------------VITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFAC 576

Query: 447 ANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++   ++ G + F ++  + G+         ++D + + G  K+DE
Sbjct: 577 SHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSG--KLDE 620



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 143/280 (51%), Gaps = 33/280 (11%)

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + L+N   K G  N A ++ + M + D++  + +IS Y N G++ +AR +FD  +  SS+
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W+S+ISGY       EA  LF  MR  G      TL SVL  CSSLG ++ G+ +HG  
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K G   +V V + L+D Y+K       CK  SE                        A+
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAK-------CKCVSE------------------------AE 217

Query: 391 HIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            +F+ +    K+ + W +M+ G +QNG   +A++ F  M+   +  ++++  ++++AC++
Sbjct: 218 FLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSS 277

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + +   GEQV   +   G  S+  + ++LVD Y KCG +K
Sbjct: 278 VLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLK 317



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 86/164 (52%)

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H       + +   + LL+  SK G  +DA KLF ++   D    NTMI+ Y + GR+ +
Sbjct: 55  HTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVE 114

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F     KS I+W+S+I G  + G  +EA DLF +M     +  +F+L SV+  C++
Sbjct: 115 ARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSS 174

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +  ++ GE +   V   G + +  + T LVD Y KC  +   E+
Sbjct: 175 LGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEF 218


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 231/524 (44%), Gaps = 108/524 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++  C +  +   G Q+    +  G+ N  + +AN L+ M+   G   DA  LFD M
Sbjct: 148 FATVVSLCGSLENEVPGLQVASQVIVSGLQNQ-VSVANSLITMFGNLGRVHDAEKLFDRM 206

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN-------------------VMPQKNDFSW-- 106
              +  SWNAMI  +   G   K   +F+                   V    + FS   
Sbjct: 207 EEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGS 266

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ ++ AG+L  A  LF +M RR+ I+WN+MI  YV+N 
Sbjct: 267 GIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNC 326

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +A++   +L          +    ++ +GAC+   AL  GK +H+ +L   L  + +
Sbjct: 327 NSTDALKTLGQL---FHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLL 383

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G+SL+ +YGK                               C  M DA +VF       
Sbjct: 384 VGNSLITMYGK-------------------------------CNSMEDAEKVFQSMPTHD 412

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL-SACSSLGFLEHGKQVH 327
            V +N +I GY    + T+A+ +F  MR  G+  +  T+ ++  S  SS     +G+ +H
Sbjct: 413 IVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLH 472

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +  + G + D  VA                               N++IT+Y+ CG +E
Sbjct: 473 AYIIRTGFLSDEYVA-------------------------------NSLITMYAKCGNLE 501

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            + +IF ++ NK+++SWN++I    Q G   EAL LF +M     ++D+  LA  +S+CA
Sbjct: 502 SSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCA 561

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +++SLE G Q+       GLDSD  +  + +D Y KCG  KMDE
Sbjct: 562 SLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCG--KMDE 603



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 194/444 (43%), Gaps = 105/444 (23%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +   G +  A+ LF +MP RN ++W +++     NG+  EA+R ++++  D V    C+A
Sbjct: 89  YGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVP---CNA 145

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
              ATV+  C  L     G Q+ S ++V+GL     + +SL+ ++G              
Sbjct: 146 NAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFG-------------- 191

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                            N G+++DA ++FDR  +  ++ WN+MIS Y      ++  L+F
Sbjct: 192 -----------------NLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVF 234

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK------VGVID--------- 337
             MR +G+  DA+TL S++S C+S     HG  +H    +      V VI+         
Sbjct: 235 SDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAA 294

Query: 338 ----------------DVIVASALLDTYSKRGMPSDACKLFSEL---------------- 365
                           D+I  + ++ +Y +    +DA K   +L                
Sbjct: 295 GKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSAL 354

Query: 366 ------------KVYDTILL-----------NTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
                       K+   I+L           N++IT+Y  C  +EDA+ +F++MP   ++
Sbjct: 355 GACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIV 414

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE-LGEQVFAR 461
           S+N +I G +      +A+ +F  M    ++ +  ++ ++  + A+ + L   G  + A 
Sbjct: 415 SYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAY 474

Query: 462 VTIIGLDSDQIISTSLVDFYCKCG 485
           +   G  SD+ ++ SL+  Y KCG
Sbjct: 475 IIRTGFLSDEYVANSLITMYAKCG 498



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 188/408 (46%), Gaps = 33/408 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C +      G  +H   L+   L+S++ + N L+ MY   G  +DA  LF  M
Sbjct: 249 LCSLMSVCASSDHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKAGEL---K 120
            RR+  SWN MI  +++  +   +L    QLF+     N  +++  +   +  G L   K
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 367

Query: 121 TARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
               +   +  +RN +  NS+I  Y +     +A ++F+ + +        D      +I
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-------DIVSYNVLI 420

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---- 235
           G  A L       Q+ S +   G+  + +   +++N++G    F S+N + N  +     
Sbjct: 421 GGYAVLEDGTKAMQVFSWMRSAGIKPNYI---TMINIHGS---FASSNDLHNYGRPLHAY 474

Query: 236 -------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                   D++  ++LI+ YA CG +  +  +F+  T+ + V WN++I+  +      EA
Sbjct: 475 IIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEA 534

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L LF  M+  G   D   LA  LS+C+SL  LE G Q+HG   K G+  D  V +A +D 
Sbjct: 535 LKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDM 594

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
           Y K G   +  ++  +  +      NT+I+ Y+  G  ++A+  F+ M
Sbjct: 595 YGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQM 642



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 171/397 (43%), Gaps = 76/397 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C++  ++  GK +H   L+   L   L + N L+ MY +C +  DA  +F  MP  +
Sbjct: 354 LGACSSPGALIDGKMVHAIVLQLS-LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHD 412

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------- 100
             S+N +I G+  L    K++Q+F+ M                                 
Sbjct: 413 IVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLH 472

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     +++  N LI+ +AK G L+++  +FN +  +N ++WN++I   V+ G   
Sbjct: 473 AYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGE 532

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA++LF ++        + D   LA  + +CA LA+LE G Q+H   + +GLD DS + +
Sbjct: 533 EALKLFIDMQH---AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVN 589

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           + +++YGK                               CGKM++  +V           
Sbjct: 590 AAMDMYGK-------------------------------CGKMDEMLQVVPDQAIRPQQC 618

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-A 330
           WN++ISGY       EA   F +M   G   D  T  ++LSACS  G ++ G   +   A
Sbjct: 619 WNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMA 678

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
              GV   +     ++D   + G  ++A K   E+ V
Sbjct: 679 SSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPV 715



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 151/370 (40%), Gaps = 74/370 (20%)

Query: 129 MPRRNAIAWNSMIHCYVR---NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           M  R    W + +   VR   +G A E +R  +E    L        F LA+++ AC   
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPL------SGFALASLVTACERR 54

Query: 186 A---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
                +  G  IH+     GL  +  +G++L++LYG                        
Sbjct: 55  GRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYG------------------------ 90

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                  + G ++DA+R+F    + + V W +++    SN    EAL  + +MRR+GV  
Sbjct: 91  -------SRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPC 143

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +A+  A+V+S C SL     G QV       G+ + V VA                    
Sbjct: 144 NANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVA-------------------- 183

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
                      N++IT++ + GR+ DA+ +F  M     ISWN+MI   S  G   +   
Sbjct: 184 -----------NSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFL 232

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           +F +M    LR D  +L S++S CA+      G  + +      LDS   +  +LV+ Y 
Sbjct: 233 VFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYS 292

Query: 483 KCGFIKMDEY 492
             G +   E+
Sbjct: 293 AAGKLSDAEF 302


>gi|242053565|ref|XP_002455928.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
 gi|241927903|gb|EES01048.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
          Length = 537

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 221/499 (44%), Gaps = 83/499 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILN-STLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           LLQ C T  S+  G+Q+H   +K+G        +  +L   Y RCG   DA      +P 
Sbjct: 75  LLQCCVTAGSLRAGRQVHAALVKRGPYYCRNAYVGTKLTVFYARCGALDDAERALGALPE 134

Query: 70  R--NCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKN-------------------- 102
           R  N F+W A+I  + + G   ++L  F  M     P  N                    
Sbjct: 135 RHRNAFAWAAVIGLWSRAGLHARALAGFVAMLEAGVPADNFVAPTVLKACAGLGLSGAGR 194

Query: 103 ---DFSWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
               ++W             L+  + K GE++ AR +F+ MP R  + WN+M+  Y+ NG
Sbjct: 195 AVHGYAWKAGVAECVYVMSSLVDFYGKCGEVEDARAVFDAMPERTVVTWNTMLMAYIHNG 254

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EAV LF E+    VE +      + + + A ADL A++ G+Q H+  + +GL+ D +
Sbjct: 255 RIDEAVELFYEMR---VEGVLPTRVSILSFLSASADLEAIDGGRQGHAVAVSSGLEMDVI 311

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LGSS++N Y K G   +A  V   MKE D                               
Sbjct: 312 LGSSMINFYCKVGLVEAAEAVFEQMKERD------------------------------- 340

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN MI+GY  + +  +A     +M    +  D  TLAS++ AC     +  G   HG
Sbjct: 341 AVTWNLMIAGYFQDGQIDKAFDTCRRMLEANLKFDCVTLASIIMACLKSCIMLVGIAAHG 400

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +A + G+  D  VAS L+D Y+  G    A ++F+ +   + ++   MI+ Y  CG   +
Sbjct: 401 YAVRNGLHSDKTVASGLIDMYASAGRIEHARRVFNAMCPRNLVIWKVMISAYVDCGINSE 460

Query: 389 AKHIFRTMP----NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
           A+++   M     + S   W+ +I    +NG   +ALD+F  M     R +  + + +IS
Sbjct: 461 ARNLLNQMQLEGISPSAACWDLVISAFIRNGQFEDALDIFSEMLLTKTRPNLRTWSLLIS 520

Query: 445 ACANISSLELGEQVFARVT 463
           A   +S   + ++ F ++T
Sbjct: 521 A---LSQNGMHQEQFLKIT 536



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 172/390 (44%), Gaps = 67/390 (17%)

Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRR--NAIAWNSMIHCYVRNGFAREAVRLFK 158
           +N +    L   +A+ G L  A      +P R  NA AW ++I  + R G    A+  F 
Sbjct: 104 RNAYVGTKLTVFYARCGALDDAERALGALPERHRNAFAWAAVIGLWSRAGLHARALAGFV 163

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
            +   L   +  D F+  TV+ ACA L     G+ +H +    G+     + SSLV+ YG
Sbjct: 164 AM---LEAGVPADNFVAPTVLKACAGLGLSGAGRAVHGYAWKAGVAECVYVMSSLVDFYG 220

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K                               CG++ DAR VFD   + + V WN+M+  
Sbjct: 221 K-------------------------------CGEVEDARAVFDAMPERTVVTWNTMLMA 249

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           YI N    EA+ LF++MR  GVL    ++ S LSA + L  ++ G+Q H  A   G+  D
Sbjct: 250 YIHNGRIDEAVELFYEMRVEGVLPTRVSILSFLSASADLEAIDGGRQGHAVAVSSGLEMD 309

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           VI+ S++++ Y         CK+                      G +E A+ +F  M  
Sbjct: 310 VILGSSMINFY---------CKV----------------------GLVEAAEAVFEQMKE 338

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           +  ++WN MI G  Q+G   +A D    M + +L+ D  +LAS+I AC     + +G   
Sbjct: 339 RDAVTWNLMIAGYFQDGQIDKAFDTCRRMLEANLKFDCVTLASIIMACLKSCIMLVGIAA 398

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
                  GL SD+ +++ L+D Y   G I+
Sbjct: 399 HGYAVRNGLHSDKTVASGLIDMYASAGRIE 428



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 39/294 (13%)

Query: 211 SSLVNLYGKCGDFNSANQV-LNMMKEPDDFCLSALISG-----YANCGKMNDARRVFDRT 264
           +SL+      G   +  QV   ++K    +C +A +       YA CG ++DA R     
Sbjct: 73  TSLLQCCVTAGSLRAGRQVHAALVKRGPYYCRNAYVGTKLTVFYARCGALDDAERALGAL 132

Query: 265 TDT--SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
            +   ++  W ++I  +        AL  F  M   GV  D     +VL AC+ LG    
Sbjct: 133 PERHRNAFAWAAVIGLWSRAGLHARALAGFVAMLEAGVPADNFVAPTVLKACAGLGLSGA 192

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           G+ VHG+A K GV + V V S+L+D Y K G   DA  +F  +     +  NTM+  Y  
Sbjct: 193 GRAVHGYAWKAGVAECVYVMSSLVDFYGKCGEVEDARAVFDAMPERTVVTWNTMLMAYIH 252

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
            GRI+                               EA++LF  M    +   + S+ S 
Sbjct: 253 NGRID-------------------------------EAVELFYEMRVEGVLPTRVSILSF 281

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           +SA A++ +++ G Q  A     GL+ D I+ +S+++FYCK G ++  E    Q
Sbjct: 282 LSASADLEAIDGGRQGHAVAVSSGLEMDVILGSSMINFYCKVGLVEAAEAVFEQ 335


>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 621

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 210/478 (43%), Gaps = 106/478 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC       +G+Q+H   +K G  N  +  A  +   Y +CG+   A ++FD+M  R
Sbjct: 193 LLKSCGEQCDGKLGQQVHCCVVKGGWSNVIMDSA--VAHFYAQCGDVDGASMMFDKMTSR 250

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFS--------------------- 105
           +  SW  MI  +++ G  +K+LQ+F  M  +    N+F+                     
Sbjct: 251 DVISWTTMITAYVQHGRGDKALQMFPAMISEGFHPNEFTVCSILKACAEEKALRCGKQLH 310

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + L++ +A+  E+  A+ +F+ MPRRN I W S+I  Y ++G A 
Sbjct: 311 GALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTITWTSLISGYAQSGHAE 370

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ LF+++ +    R+  +   +  ++ AC  L +L  GK++H+ ++ N +  +  +GS
Sbjct: 371 RAIMLFRQMKT---RRVSVNNLTIVGLLSACGSLRSLCLGKELHAQVIKNSIQENLQIGS 427

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV                        +C       Y  CG+   A R+ +   D  +V 
Sbjct: 428 TLV------------------------WC-------YCKCGEYTYAARILEEMPDRDAVA 456

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MISGY S     EAL     M  +GV  +  T +S L AC+ L  L+ G+++HG   
Sbjct: 457 WTAMISGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIHGVVN 516

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K     +V V S+L+D Y + G   +A ++FS L                          
Sbjct: 517 KTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSAL-------------------------- 550

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
                P  +L++W  +I G +QNG   EA      M +     D F L+ V+++C ++
Sbjct: 551 -----PEHNLVTWKVIITGFAQNGLCEEAFKYMYLMQQQGYDADDFMLSKVLTSCGDL 603



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 212/488 (43%), Gaps = 107/488 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---- 98
           +AN L+  Y R     DA  +FDEMP R   SW AM+ G+ K G+  + ++LF  M    
Sbjct: 123 LANNLITSYARFHEIPDARKVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLFLDMIASG 182

Query: 99  PQKNDFSWNMLISG----------------------------------FAKAGELKTART 124
            + N  S+  L+                                    +A+ G++  A  
Sbjct: 183 ERGNSLSFVCLLKSCGEQCDGKLGQQVHCCVVKGGWSNVIMDSAVAHFYAQCGDVDGASM 242

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ M  R+ I+W +MI  YV++G   +A+++F  +   + E    + F + +++ ACA+
Sbjct: 243 MFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPAM---ISEGFHPNEFTVCSILKACAE 299

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
             AL  GKQ+H  ++      D  +GS+LV +Y +  + + A  V ++M   +    ++L
Sbjct: 300 EKALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTITWTSL 359

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           ISGYA  G                                   A++LF +M+   V  + 
Sbjct: 360 ISGYAQSGHAE-------------------------------RAIMLFRQMKTRRVSVNN 388

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  +LSAC SL  L  GK++H    K  + +++ + S L+  Y K G  + A ++  E
Sbjct: 389 LTIVGLLSACGSLRSLCLGKELHAQVIKNSIQENLQIGSTLVWCYCKCGEYTYAARILEE 448

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV-GLSQNGSPIEALDL 423
           +   D +    MI+ Y+S G   +A           L S + M+  G++ N         
Sbjct: 449 MPDRDAVAWTAMISGYNSVGHSAEA-----------LKSLDDMLWDGVTPN--------- 488

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
                        ++ +S + ACA + +L+ G ++   V      S+  + +SL+D Y +
Sbjct: 489 ------------TYTYSSALKACAKLEALQDGRRIHGVVNKTPAFSNVFVGSSLIDMYMR 536

Query: 484 CGFIKMDE 491
           CG  K+DE
Sbjct: 537 CG--KVDE 542



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 34/249 (13%)

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           P  F  + LI+ YA   ++ DAR+VFD   + + V W +M++GY  +    E + LF  M
Sbjct: 119 PGIFLANNLITSYARFHEIPDARKVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLFLDM 178

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGM 354
             +G   ++ +   +L +C      + G+QV  H C V G   +VI+ SA+   Y++ G 
Sbjct: 179 IASGERGNSLSFVCLLKSCGEQCDGKLGQQV--HCCVVKGGWSNVIMDSAVAHFYAQCGD 236

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A  +F ++   D I   TMIT Y   GR + A  +F  M              +S+ 
Sbjct: 237 VDGASMMFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPAM--------------ISEG 282

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
             P E                 F++ S++ ACA   +L  G+Q+   +      +D  + 
Sbjct: 283 FHPNE-----------------FTVCSILKACAEEKALRCGKQLHGALVKKLFKNDIHVG 325

Query: 475 TSLVDFYCK 483
           ++LV  Y +
Sbjct: 326 SALVTMYAR 334



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 18/118 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIAN-----RLLQMYMRCGNPTDALLLFDE 66
           L++C    ++  G+++H      G++N T   +N      L+ MYMRCG   +A  +F  
Sbjct: 496 LKACAKLEALQDGRRIH------GVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSA 549

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELK 120
           +P  N  +W  +I GF + G  E++ +   +M Q+    +DF   ML       G+L+
Sbjct: 550 LPEHNLVTWKVIITGFAQNGLCEEAFKYMYLMQQQGYDADDF---MLSKVLTSCGDLQ 604


>gi|302781640|ref|XP_002972594.1| hypothetical protein SELMODRAFT_97233 [Selaginella moellendorffii]
 gi|300160061|gb|EFJ26680.1| hypothetical protein SELMODRAFT_97233 [Selaginella moellendorffii]
          Length = 620

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 201/449 (44%), Gaps = 71/449 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEM--PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK- 101
           N ++ +  R GN   AL LF  M   RR+  SWNA+I  + + GH++ +L++F  M  + 
Sbjct: 83  NTMITVLARAGNGERALELFQRMIHERRDVVSWNAIIRAYSQHGHRKSALEMFRRMQHEC 142

Query: 102 -------------------------------------NDFSWNMLISGFAKAGELKTART 124
                                                N F  N L+    K G +  A+ 
Sbjct: 143 SVAPNEVTFVSVLGAAEEASELRMIHDRAAENGFHSSNVFVGNSLVHMHGKCGSVHDAKQ 202

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF+ M  ++  +WNS++  Y  NG  REA +LF+ +     E ++ D     TV+  C  
Sbjct: 203 LFDAMALQSVSSWNSIVDAYAHNGLEREAFKLFRTMQH---EGVRPDKVTFLTVLEVCTS 259

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L  +   +++   +   GL  D +L ++L+ ++ +    + A +  + +++ D F  + L
Sbjct: 260 LRQVRLLQEL---VTSAGLRSDVLLQTALLQVFARNSSISDAKRTFDGVRDKDLFAWNTL 316

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           ++ YA C ++  A+  FDR  + + V WN++ S Y+ N +   AL L   M+  G   D 
Sbjct: 317 LTAYAQCSRLEQAKAAFDRMEEKNLVSWNALASAYVQNAQGDAALELLASMQLEGTKPDR 376

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T  + L AC    F +  +    HA    +I   I  S  L                  
Sbjct: 377 VTFFASLDAC----FTDISQVRMLHAQISRIIHRSIAESGFLS----------------- 415

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
               D I+ NT+I +Y  CG   +A+ +F +M  ++L+SWNS++   +Q+G   EA  LF
Sbjct: 416 ----DVIIDNTLINMYGKCGSPREARRVFDSMRERALVSWNSIVTVAAQHGEVAEARKLF 471

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLE 453
             + +  L+ D  +L SV S C ++  LE
Sbjct: 472 RGLQQEGLKPDNVALMSVASVCQHVGLLE 500



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 201/423 (47%), Gaps = 48/423 (11%)

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM-- 129
            F  NA+   + + G  +++  +F  +  K+  SWN +I+  A+AG  + A  LF  M  
Sbjct: 48  TFLGNALANLYGRAGRLDEAELVFESIAHKDVVSWNTMITVLARAGNGERALELFQRMIH 107

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
            RR+ ++WN++I  Y ++G  + A+ +F+ +  +    +  +     +V+GA  + + L 
Sbjct: 108 ERRDVVSWNAIIRAYSQHGHRKSALEMFRRMQHEC--SVAPNEVTFVSVLGAAEEASEL- 164

Query: 190 YGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             + IH     NG    +V +G+SLV+++GKC                            
Sbjct: 165 --RMIHDRAAENGFHSSNVFVGNSLVHMHGKC---------------------------- 194

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
              G ++DA+++FD     S   WNS++  Y  N  + EA  LF  M+  GV  D  T  
Sbjct: 195 ---GSVHDAKQLFDAMALQSVSSWNSIVDAYAHNGLEREAFKLFRTMQHEGVRPDKVTFL 251

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           +VL  C+SL      + +       G+  DV++ +ALL  +++    SDA + F  ++  
Sbjct: 252 TVLEVCTSL---RQVRLLQELVTSAGLRSDVLLQTALLQVFARNSSISDAKRTFDGVRDK 308

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D    NT++T Y+ C R+E AK  F  M  K+L+SWN++     QN     AL+L  +M 
Sbjct: 309 DLFAWNTLLTAYAQCSRLEQAKAAFDRMEEKNLVSWNALASAYVQNAQGDAALELLASMQ 368

Query: 429 KLDLRMDKFSLASVISAC-ANISSLELGEQVFAR-----VTIIGLDSDQIISTSLVDFYC 482
               + D+ +  + + AC  +IS + +     +R     +   G  SD II  +L++ Y 
Sbjct: 369 LEGTKPDRVTFFASLDACFTDISQVRMLHAQISRIIHRSIAESGFLSDVIIDNTLINMYG 428

Query: 483 KCG 485
           KCG
Sbjct: 429 KCG 431



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 145/369 (39%), Gaps = 101/369 (27%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           + +H    + G  +S + + N L+ M+ +CG+  DA  LFD M  ++  SWN++++ +  
Sbjct: 165 RMIHDRAAENGFHSSNVFVGNSLVHMHGKCGSVHDAKQLFDAMALQSVSSWNSIVDAYAH 224

Query: 85  LGHKEKSLQLFNVM------PQKNDF------------------------------SWNM 108
            G + ++ +LF  M      P K  F                                  
Sbjct: 225 NGLEREAFKLFRTMQHEGVRPDKVTFLTVLEVCTSLRQVRLLQELVTSAGLRSDVLLQTA 284

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE--------- 159
           L+  FA+   +  A+  F+ +  ++  AWN+++  Y +     +A   F           
Sbjct: 285 LLQVFARNSSISDAKRTFDGVRDKDLFAWNTLLTAYAQCSRLEQAKAAFDRMEEKNLVSW 344

Query: 160 --LNSDLVERLQCDAF--ILATV---------------IGAC-ADLAAL-----EYGKQI 194
             L S  V+  Q DA   +LA++               + AC  D++ +     +  + I
Sbjct: 345 NALASAYVQNAQGDAALELLASMQLEGTKPDRVTFFASLDACFTDISQVRMLHAQISRII 404

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H  I  +G   D ++ ++L+N+YGKCG    A                            
Sbjct: 405 HRSIAESGFLSDVIIDNTLINMYGKCGSPREA---------------------------- 436

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
              RRVFD   + + V WNS+++    + E  EA  LF  +++ G+  D   L SV S C
Sbjct: 437 ---RRVFDSMRERALVSWNSIVTVAAQHGEVAEARKLFRGLQQEGLKPDNVALMSVASVC 493

Query: 315 SSLGFLEHG 323
             +G LE  
Sbjct: 494 QHVGLLEEA 502


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/590 (24%), Positives = 247/590 (41%), Gaps = 156/590 (26%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC-------- 54
           T+    + + Q C+   ++  GKQ H   +       T+ + N L+QMY++C        
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTE-FKPTVFVTNCLIQMYIKCSDLEFAFK 98

Query: 55  ---GNPT------DALL--------------LFDEMPRRNCFSWNAMIEGFMKLGHKEKS 91
              G P       +A+L              LFD MP R+  SWN++I G++  G   K 
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKV 158

Query: 92  LQLFNVMPQK-------------------NDFSWNMLISG-------------------- 112
           + +F  M +                     D    + I G                    
Sbjct: 159 IDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDM 218

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK  +L  +   F+ MP +N ++W+++I   V+N   R  + LFKE+    V   Q   
Sbjct: 219 YAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQS-- 276

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
              A+V  +CA L+AL  G Q+H H L      D V+G++ +++Y KC +          
Sbjct: 277 -TFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNN---------- 325

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                                ++DA+++F+   + +   +N++I GY  +++        
Sbjct: 326 ---------------------LSDAQKLFNSLPNHNLQSYNAIIVGYARSDK-------- 356

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
                 G+  D  +L+    AC+ +     G QVHG + K     ++ VA+A+LD Y K 
Sbjct: 357 ------GLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKC 410

Query: 353 GMPSDACKLFSELKVYDTILLNTMIT---------------------------------- 378
           G   +AC +F E+   D +  N +I                                   
Sbjct: 411 GALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIA 470

Query: 379 ---VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
              +YS CG +E A+ +   +  ++++SWN++I G S      EA   F  M ++ +  D
Sbjct: 471 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPD 530

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            F+ A+++  CAN+ ++ELG+Q+ A++    L SD  IS++LVD Y KCG
Sbjct: 531 NFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 580



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 215/504 (42%), Gaps = 125/504 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A + +SC    ++ +G QLH H LK     + + I    L MYM+C N +DA  LF+ +
Sbjct: 278 FASVFRSCAGLSALRLGSQLHGHALKTD-FGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336

Query: 68  PRRNCFSWNAMIEGFMK----LGHKEKSL-----------------QLFNV----MPQKN 102
           P  N  S+NA+I G+ +    LG  E SL                 Q+  +    + Q N
Sbjct: 337 PNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSN 396

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
               N ++  + K G L  A  +F +M  R+A++WN++I  + +NG   + + LF     
Sbjct: 397 ICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLF----- 451

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                                          IH+ I+ + L  DS +G +L+++Y K   
Sbjct: 452 -------------------------------IHNRIIKSRLGLDSFVGIALIDMYSK--- 477

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
                                       CG M  A ++ DR  + + V WN++ISG+   
Sbjct: 478 ----------------------------CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 509

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
            +  EA   F KM   GV  D  T A++L  C++L  +E GKQ+H    K  +  D  ++
Sbjct: 510 KQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYIS 569

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           S L+D YSK                               CG ++D + IF   PN+  +
Sbjct: 570 STLVDMYSK-------------------------------CGNMQDFQLIFEKAPNRDFV 598

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-AR 461
           +WN+M+ G +Q+G   EAL +F  M   +++ +  +  +V+ AC ++  +E G   F + 
Sbjct: 599 TWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSM 658

Query: 462 VTIIGLDSDQIISTSLVDFYCKCG 485
           ++  GLD      + +VD   + G
Sbjct: 659 LSNYGLDPQLEHYSCVVDIMGRSG 682



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 180/373 (48%), Gaps = 43/373 (11%)

Query: 27  LHLHFLK-KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           L +H L  K +  S + +AN +L MY +CG   +A L+F+EM  R+  SWNA+I    + 
Sbjct: 382 LQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQN 441

Query: 86  GHKEKSLQLF---NVMPQK---NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
           G++EK+L LF    ++  +   + F    LI  ++K G ++ A  L + +  +  ++WN+
Sbjct: 442 GNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNA 501

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I  +     + EA + F ++   L   +  D F  AT++  CA+L  +E GKQIH+ I+
Sbjct: 502 IISGFSLQKQSEEAQKTFSKM---LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQII 558

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
              L  D+ + S+LV++Y KCG+                               M D + 
Sbjct: 559 KKELQSDAYISSTLVDMYSKCGN-------------------------------MQDFQL 587

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +F++  +   V WN+M+ GY  +    EAL +F  M+   V  + +T  +VL AC  +G 
Sbjct: 588 IFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGL 647

Query: 320 LEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMI 377
           +E G    H      G+   +   S ++D   + G  S A +L   +    D ++  T++
Sbjct: 648 VEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLL 707

Query: 378 TVYSSCGRIEDAK 390
           ++    G +E A+
Sbjct: 708 SICKIHGNVEVAE 720



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 17/235 (7%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L +C    ++ +GKQ+H   +KK  L S   I++ L+ MY +CGN  D  L+F++ P
Sbjct: 535 ATILDTCANLVTVELGKQIHAQIIKKE-LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 593

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTART 124
            R+  +WNAM+ G+ + G  E++L++F  M     + N  ++  ++      G ++    
Sbjct: 594 NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLH 653

Query: 125 LFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            F+ M     +      ++ ++    R+G   +A+ L + +        + DA I  T++
Sbjct: 654 YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGM------PFEADAVIWRTLL 707

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             C     +E  ++    IL    + DS     L N+Y   G +N   ++  MM+
Sbjct: 708 SICKIHGNVEVAEKAAYSILQLEPE-DSAAYVLLSNIYANAGMWNEVTKLRKMMR 761


>gi|356519999|ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 200/381 (52%), Gaps = 5/381 (1%)

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I   A++G++  AR LF+++P ++++AWN+M+  Y   G  ++++ LF  +    +   +
Sbjct: 12  IVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMR---ISHSK 68

Query: 170 CDAFILATVIGACADLAA--LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
            D F  + V+ ACA   A  + +G  +H+ ++V+G      + +SL+++YGKC   + A 
Sbjct: 69  PDNFSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKCLLPDDAR 128

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           +V +   + ++    +L+  YAN  ++  A  +F    +   + WN MI G+    E   
Sbjct: 129 KVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHARRGEVEA 188

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
            L LF +M  +    D  T +++++AC+    + +G  VHG   K G    + V +++L 
Sbjct: 189 CLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAMEVKNSMLS 248

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y+K     DA K+F+    ++ +  N +I  +   G  + A   F+  P ++++SW SM
Sbjct: 249 FYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSM 308

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G ++NG+   AL +F ++ +  +++D     +V+ ACA+++ L  G  V   +   GL
Sbjct: 309 IAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHGRMVHGCIIRHGL 368

Query: 468 DSDQIISTSLVDFYCKCGFIK 488
           D    +  SLV+ Y KCG IK
Sbjct: 369 DKYLYVGNSLVNMYAKCGDIK 389



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 201/475 (42%), Gaps = 67/475 (14%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C     +  G  LH   +  G L S+LP+AN L+ MY +C  P DA  +FDE       
Sbjct: 82  ACAGASYVRFGATLHALVVVSGYL-SSLPVANSLIDMYGKCLLPDDARKVFDETS----- 135

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
                                       N+ +W  L+  +A +  L  A  LF  MP R 
Sbjct: 136 --------------------------DSNEVTWCSLMFAYANSCRLGVALELFRSMPERV 169

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            IAWN MI  + R G     + LFKE+   L    Q D +  + +I ACA    + YG  
Sbjct: 170 VIAWNIMIVGHARRGEVEACLHLFKEMCGSLC---QPDQWTFSALINACAVSMEMLYGCM 226

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +H  ++ +G      + +S+++ Y K    + A +V N     +    +A+I  +   G 
Sbjct: 227 VHGFVIKSGWSSAMEVKNSMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGD 286

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
              A   F +  + + V W SMI+GY  N     AL +F  + RN V  D     +VL A
Sbjct: 287 TQKAFLAFQKAPERNIVSWTSMIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHA 346

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C+SL  L HG+ VHG   + G           LD Y   G                    
Sbjct: 347 CASLAILVHGRMVHGCIIRHG-----------LDKYLYVG-------------------- 375

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
           N+++ +Y+ CG I+ ++  F  + +K LISWNSM+     +G   EA+ L+  M    ++
Sbjct: 376 NSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMVASGVK 435

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFI 487
            D+ +   ++  C+++  +  G   F  + +  GL         +VD   + G++
Sbjct: 436 PDEVTFTGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVACMVDMLGRGGYV 490



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 67/352 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+ +C     +  G  +H   +K G  +S + + N +L  Y +     DA+ +F+  
Sbjct: 208 FSALINACAVSMEMLYGCMVHGFVIKSG-WSSAMEVKNSMLSFYAKLECQDDAMKVFNSF 266

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              N  SWNA+I+  MKLG  +K+   F   P++N  SW  +I+G+ + G  + A ++F 
Sbjct: 267 GCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSMIAGYTRNGNGELALSMFL 326

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           D+ R +                                  +Q D  +   V+ ACA LA 
Sbjct: 327 DLTRNS----------------------------------VQLDDLVAGAVLHACASLAI 352

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L +G+ +H  I+ +GLD    +G+SLVN+Y KCGD                         
Sbjct: 353 LVHGRMVHGCIIRHGLDKYLYVGNSLVNMYAKCGD------------------------- 387

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                 +  +R  F    D   + WNSM+  +  +    EA+ L+ +M  +GV  D  T 
Sbjct: 388 ------IKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMVASGVKPDEVTF 441

Query: 308 ASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDA 358
             +L  CS LG +  G       C + G+   +   + ++D   + G  ++A
Sbjct: 442 TGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVACMVDMLGRGGYVAEA 493


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/433 (29%), Positives = 207/433 (47%), Gaps = 43/433 (9%)

Query: 35  GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR----NCFSWNAMIEGFMKLGHKEK 90
           GIL+    + N + + Y     P +AL L   M RR    N F+   +++   +    + 
Sbjct: 4   GILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDN 63

Query: 91  SLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
           +L +  V  +       F  N L+  +A AG L  +R  F++M  RN ++WNSMI  Y +
Sbjct: 64  ALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQ 123

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            G  REA  LF E+     +    D F LA+++ AC+    LE+G+ +H  +LV+G   D
Sbjct: 124 AGDTREACALFGEMRR---QGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            +LG +LV++Y KCGD   A +   MM        ++++      G ++ AR  FD   +
Sbjct: 181 LILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPE 240

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            ++V WN+MIS Y+   +  EAL L+ +M+ +G   D +TL  VLSAC  +G L  GK V
Sbjct: 241 RNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMV 300

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H +        D+ + ++LLD Y+K G    A +LF E+   + +  N +I   +  GR 
Sbjct: 301 HLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRA 360

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            DA   FR+M                +N SP                 D  +  +++S+C
Sbjct: 361 LDAITFFRSM---------------VRNTSP-----------------DGITFVALLSSC 388

Query: 447 ANISSLELGEQVF 459
           ++   LE G+  F
Sbjct: 389 SHGGLLETGQHYF 401



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 167/363 (46%), Gaps = 34/363 (9%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ +   + + +N++   Y  +   REA+RL + +   L   +  + F L  V+ AC  
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCM---LRRGVLPNEFTLPFVVKACTR 57

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
             A +    +H   L  G                         QV         F  +AL
Sbjct: 58  AQAWDNALAVHGVALKLGF----------------------VGQV---------FVANAL 86

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  YA+ G + D+RR FD     + V WNSMI GY    +  EA  LF +MRR G L D 
Sbjct: 87  LHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDE 146

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            TLAS+L ACS  G LE G+ VH      G   D+I+  AL+D YSK G    A + F  
Sbjct: 147 FTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEM 206

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           + +   +   +M+   +  G ++ A+  F  MP ++ +SWN+MI    Q G   EALDL+
Sbjct: 207 MPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLY 266

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M       D+ +L  V+SAC  I  L +G+ V   +     + D  +  SL+D Y KC
Sbjct: 267 KQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKC 326

Query: 485 GFI 487
           G +
Sbjct: 327 GQV 329



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C     + VGK +HL +++  I N  + + N LL MY +CG    A+ LF EM
Sbjct: 281 LVPVLSACGRIGDLTVGKMVHL-YIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREM 339

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTART 124
             RN  SWN +I G    G    ++  F  M +    +  ++  L+S  +  G L+T + 
Sbjct: 340 CNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRNTSPDGITFVALLSSCSHGGLLETGQH 399

Query: 125 LFNDMP-----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            F  M      +     +  M+    R G   +AV L KE+       ++ D  +   ++
Sbjct: 400 YFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMP------MKPDVVVWGALL 453

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
           GAC     ++ GKQ+   +    L+ + + G   V   NL  +   +    ++  +MKE
Sbjct: 454 GACRIHGNVKIGKQVIKQL----LELEGISGGLFVLISNLLYETNQWEDMKRLRKLMKE 508


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 221/502 (44%), Gaps = 112/502 (22%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C+   ++   + +H H +K     + L +   ++ MY++C     A  LF  MP+R+ 
Sbjct: 62  KACSKLLNLKYSQIVHTHVVKSR-FQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDV 120

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------------- 101
            SWN+MI GF +LG  ++ + LF  M  +                               
Sbjct: 121 ASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180

Query: 102 -------NDFSW-NMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAR 151
                   D S  N  I+ +AK GE   A T+F+ + +  +  ++WNSMI  Y       
Sbjct: 181 GIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCS 240

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +AV  FK++   L    + D   + +++ +C     L +GK IH+H +  G D D     
Sbjct: 241 KAVGFFKKM---LCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDI---- 293

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                           QV+N            LIS Y+ CG +  AR +FD     + V 
Sbjct: 294 ----------------QVIN-----------TLISMYSKCGDIGSARYLFDNMLGKTRVS 326

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MI+GY    +  EA+ LF  M   G   D  T+ S++S C   G LE GK +  +A 
Sbjct: 327 WTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYAT 386

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G+ D+++V +AL+D                               VY+ CG +++A+ 
Sbjct: 387 ANGLKDNLMVCNALID-------------------------------VYAKCGSMDNARE 415

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F TMP KSL+SW ++I G + NG   EAL LF  M +L L+ +  +  +V+ AC +   
Sbjct: 416 LFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGF 475

Query: 452 LELGEQVFARVTII-----GLD 468
           LE G + F  +T +     GLD
Sbjct: 476 LEKGWECFNLMTKVYKINPGLD 497



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 194/439 (44%), Gaps = 71/439 (16%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--------QKNDFSW 106
           G    ALLLF +M +      N       K   K  +L+   ++         Q + F  
Sbjct: 33  GYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQ 92

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++  + K  +L  A  LF+ MP+R+  +WNSMI  + + GF    V LF E+    +E
Sbjct: 93  TSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMG---IE 149

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++ D+  +  +  +   L  L+  + IHS  +  G+D D  + ++ +  Y KCG+F  A
Sbjct: 150 GIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLA 209

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V + +                            D+   T  V WNSMI+GY    + +
Sbjct: 210 ETVFDGI----------------------------DKGLKT-GVSWNSMIAGYAHFEQCS 240

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +A+  F KM   G   D ST+ S+LS+C     L HGK +H H  +VG   D+ V + L 
Sbjct: 241 KAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTL- 299

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                                         I++YS CG I  A+++F  M  K+ +SW +
Sbjct: 300 ------------------------------ISMYSKCGDIGSARYLFDNMLGKTRVSWTA 329

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI G ++ G   EA+ LF  M  +  + D  ++ S++S C    +LELG+ +    T  G
Sbjct: 330 MIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANG 389

Query: 467 LDSDQIISTSLVDFYCKCG 485
           L  + ++  +L+D Y KCG
Sbjct: 390 LKDNLMVCNALIDVYAKCG 408



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 32/236 (13%)

Query: 257 ARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           A + F+R ++  +V  WNS I+  ++     +ALLLF +M++NG+  +  T  SV  ACS
Sbjct: 6   ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L  L++ + VH H  K     D+ V ++++D Y K                        
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVK------------------------ 101

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  C ++  A ++F  MP + + SWNSMI+G +Q G     + LFC M    +R D
Sbjct: 102 -------CSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRAD 154

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             ++  +  +  ++  L++ E + +    IG+D+D  +S + +  Y KCG   + E
Sbjct: 155 SVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAE 210



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WNS I   V  G+A +A+ LF+++  +    L+ +     +V  AC+ L  L+Y + +H+
Sbjct: 22  WNSSITESVNQGYAHKALLLFRQMKQN---GLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
           H++ +    D  + +S+V++Y K                               C ++  
Sbjct: 79  HVVKSRFQADLFVQTSVVDMYVK-------------------------------CSQLGF 107

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A  +F R        WNSMI G+         + LF +M   G+  D+ T+  +  +  S
Sbjct: 108 AYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALS 167

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           L  L+  + +H    K+G+  DV V+                               NT 
Sbjct: 168 LKDLKMLESIHSFGIKIGIDTDVSVS-------------------------------NTW 196

Query: 377 ITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           I  Y+ CG    A+ +F  +    K+ +SWNSMI G +      +A+  F  M     R 
Sbjct: 197 IAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRA 256

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           D  ++ S++S+C     L  G+ + A    +G DSD  +  +L+  Y KCG I    Y
Sbjct: 257 DLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARY 314



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 118/269 (43%), Gaps = 55/269 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK +H H ++ G  +S + + N L+ MY +CG+   A  LFD M  +   SW AMI G+ 
Sbjct: 277 GKLIHAHGIQVGC-DSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYA 335

Query: 84  KLGHKEKSLQLFNVMP---QKNDF-------------------SW--------------- 106
           + G  ++++ LF+ M    +K D                     W               
Sbjct: 336 EKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLM 395

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LI  +AK G +  AR LF  MP ++ ++W ++I     NG  +EA+ LF +    +
Sbjct: 396 VCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQ----M 451

Query: 165 VE-RLQCDAFILATVIGACADLAALEYGKQIHS-----HILVNGLDFDSVLGSSLVNLYG 218
           VE  L+ +      V+ AC     LE G +  +     + +  GLD  S +     +L G
Sbjct: 452 VELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMA----DLLG 507

Query: 219 KCGDFNSANQVL-NMMKEPDDFCLSALIS 246
           + G    A + + NM  +PD    S L+S
Sbjct: 508 RKGRLKEAFEFIQNMPFKPDVGIWSVLLS 536



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 17/233 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+  C    ++ +GK +  +    G L   L + N L+ +Y +CG+  +A  LF  MP +
Sbjct: 365 LMSGCGQTGALELGKWIDTYATANG-LKDNLMVCNALIDVYAKCGSMDNARELFYTMPEK 423

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW  +I G    G  +++L LF  M +     N  ++  ++     AG L+     F
Sbjct: 424 SLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECF 483

Query: 127 NDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           N M +   I      ++ M     R G  +EA    + +        + D  I + ++ A
Sbjct: 484 NLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNM------PFKPDVGIWSVLLSA 537

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           C     +  G+ +  H L       +V    + N+Y   G ++    +  MMK
Sbjct: 538 CKIHQNVVIGECVAYH-LFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMK 589


>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 251/531 (47%), Gaps = 92/531 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             ++LQ+C     +   K +H   ++ G L+  + ++N +L  +++CG  + A   F  M
Sbjct: 183 FPKILQACGNCEDLETVKLIHSLVIRCG-LSCYMRLSNSILTAFVKCGKLSLARKFFGNM 241

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKTAR 123
             R+  SWN MI G+ + G+ +++ +L + M  +       ++N++I+ +++ G+     
Sbjct: 242 DERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVI 301

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            L   M       +   W SMI  + ++    +A+  FK++   ++  ++ +   +A+  
Sbjct: 302 DLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKM---ILAGVEPNTITIASAT 358

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA L +L+ G +IH   +  G+  ++++G+SL+++Y KCG   +A  V + + E D +
Sbjct: 359 SACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVY 418

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKM 295
             +++I GY   G    A  +F R  +++     V WN+MISG I N ++ +A+ LF  M
Sbjct: 419 TWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIM 478

Query: 296 RRNGVLE------------------------------------DASTLASVLSACSSLGF 319
            ++G ++                                    ++ T+ S+L AC+++  
Sbjct: 479 EKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMA 538

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
            +  K++HG   +  +  ++ VA++L+DTY+K                            
Sbjct: 539 EKKIKEIHGCVLRRNLESELAVANSLVDTYAK---------------------------- 570

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
               G I+ ++ +F  M +K +I+WNS+I G   +G    A  LF  M  L +R ++ +L
Sbjct: 571 ---SGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTL 627

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKCG 485
           AS+I A      ++ G  VF+ +T    +  QI+ T     ++VD Y + G
Sbjct: 628 ASIIHAYGIAGMVDKGRHVFSSIT----EEHQILPTLDHYLAMVDLYGRSG 674



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 212/468 (45%), Gaps = 86/468 (18%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N F    L+S +AK G LK AR +F+ M  RN   W++MI  Y R    +E V LF  + 
Sbjct: 113 NPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMM 172

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            D V     DAF+   ++ AC +   LE  K IHS ++  GL     L +S++  + KCG
Sbjct: 173 GDGV---LPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCG 229

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--------TSSVM-- 271
             + A +    M E D    + +I+GY   G  ++ARR+ D  ++        T ++M  
Sbjct: 230 KLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIA 289

Query: 272 -----------------------------WNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                                        W SMISG+  ++  ++AL  F KM   GV  
Sbjct: 290 SYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEP 349

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +  T+AS  SAC+SL  L++G ++H  A K+G+  + +V ++L+D YSK G    A  +F
Sbjct: 350 NTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVF 409

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIF------RTMPNKSLISWNSMIVGLSQNGS 416
             +   D    N+MI  Y   G    A  +F        MPN  +++WN+MI G  QNG 
Sbjct: 410 DTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPN--VVTWNAMISGCIQNGD 467

Query: 417 PIEALDLFCNMNK------------------------------------LDLRMDKFSLA 440
             +A+DLF  M K                                    L+   +  ++ 
Sbjct: 468 EDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTIL 527

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           S++ ACAN+ + +  +++   V    L+S+  ++ SLVD Y K G IK
Sbjct: 528 SILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIK 575



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 187/421 (44%), Gaps = 79/421 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A    +C +  S+  G ++H   +K GI   TL + N L+ MY +CG    A  +FD +
Sbjct: 354 IASATSACASLKSLQNGLEIHCFAIKMGIARETL-VGNSLIDMYSKCGKLEAARHVFDTI 412

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKAGELKT 121
             ++ ++WN+MI G+ + G+  K+ +LF       VMP  N  +WN +ISG  + G+   
Sbjct: 413 LEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMP--NVVTWNAMISGCIQNGDEDQ 470

Query: 122 ARTLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           A  LF  M +     RN  +WNS+I  Y + G   +A+ +F+++ S        ++  + 
Sbjct: 471 AMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQS---LNFSPNSVTIL 527

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           +++ ACA++ A +  K+IH  +L   L+ +  + +SLV+ Y K G+              
Sbjct: 528 SILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGN-------------- 573

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                            +  +R VF+  +    + WNS+I+GYI +     A  LF +MR
Sbjct: 574 -----------------IKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMR 616

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
             G+  +  TLAS++ A    G ++ G+ V                             S
Sbjct: 617 NLGIRPNRGTLASIIHAYGIAGMVDKGRHVF----------------------------S 648

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNG 415
              +    L   D  L   M+ +Y   GR+ DA      MP +  +S W S++     +G
Sbjct: 649 SITEEHQILPTLDHYL--AMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHG 706

Query: 416 S 416
           +
Sbjct: 707 N 707



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 74/378 (19%)

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NG  REA+     + S    +L  + +I   ++  C D+ ++E G+++H           
Sbjct: 58  NGLLREAITAIDSI-SKRGSKLSTNTYI--NLLQTCIDVGSIELGRELHVR--------- 105

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                  + ++   + F  + L+S YA CG + DAR+VFD   +
Sbjct: 106 -----------------------MGLVHRVNPFVETKLVSMYAKCGCLKDARKVFDGMQE 142

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            +   W++MI  Y       E + LF  M  +GVL DA     +L AC +   LE  K +
Sbjct: 143 RNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLI 202

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    + G+   + +++++L  + K G  S A K F  +   D +  N MI  Y   G  
Sbjct: 203 HSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNG 262

Query: 387 EDAKHIFRTMPNKS---------------------------------------LISWNSM 407
           ++A+ +  TM N+                                        + +W SM
Sbjct: 263 DEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSM 322

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G SQ+    +ALD F  M    +  +  ++AS  SACA++ SL+ G ++      +G+
Sbjct: 323 ISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGI 382

Query: 468 DSDQIISTSLVDFYCKCG 485
             + ++  SL+D Y KCG
Sbjct: 383 ARETLVGNSLIDMYSKCG 400



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 40/219 (18%)

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
           SN    EA+     + + G     +T  ++L  C  +G +E G+++H    ++G++  V 
Sbjct: 57  SNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH---VRMGLVHRV- 112

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
                                F E K         ++++Y+ CG ++DA+ +F  M  ++
Sbjct: 113 -------------------NPFVETK---------LVSMYAKCGCLKDARKVFDGMQERN 144

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           L +W++MI   S+     E ++LF  M    +  D F    ++ AC N   LE  + + +
Sbjct: 145 LYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHS 204

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCG--------FIKMDE 491
            V   GL     +S S++  + KCG        F  MDE
Sbjct: 205 LVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDE 243


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 199/387 (51%), Gaps = 40/387 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + L+++C    ++ +G+ +H H  KKG   S L +   L+  Y +    ++A  +FDEM
Sbjct: 141 FSSLVKACTFMCAVELGQMVHCHIWKKG-FESHLFVQTALVDFYSKLEILSEARKVFDEM 199

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             R+ F+W AM+    ++G  + + +LF  MP++N  +WN +I G+ + G +++A  LFN
Sbjct: 200 CERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFN 259

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
            MP ++ I+W +MI CY +N   ++A+ ++ E+    +  +  D   ++TV  ACA + A
Sbjct: 260 QMPTKDIISWTTMITCYSQNKQYQDALAIYSEMR---LNGIIPDEVTMSTVASACAHIGA 316

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE GK+IH +++  GL+ D  +GS+LV++Y KCG  + +  +   + + + +C +A+I G
Sbjct: 317 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 376

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A                          + GY       +AL +F  M R  ++ +  T 
Sbjct: 377 LA--------------------------VHGYAE-----KALRMFAIMEREKIMPNGVTF 405

Query: 308 ASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
            S+LSAC+  G ++ G+       +   +  D+     ++D  SK G  ++A +L   ++
Sbjct: 406 ISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSME 465

Query: 367 VY-DTILLNTMIT---VYSSCGRIEDA 389
              ++I+   ++    ++ +C   EDA
Sbjct: 466 FEPNSIIWGALLNGCKLHGNCEIAEDA 492



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 173/369 (46%), Gaps = 64/369 (17%)

Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
           F  M   N   +N+MI  +V  G+   A++ +  +  +    +   ++  ++++ AC  +
Sbjct: 94  FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEE--SNVLPTSYTFSSLVKACTFM 151

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            A+E G+ +H HI   G +    + ++LV+ Y K    + A +V + M E D F  +A++
Sbjct: 152 CAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAML 211

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI------------------------- 280
           S  A  G M+ AR++F+   + ++  WN+MI GY                          
Sbjct: 212 SALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTT 271

Query: 281 ------SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
                  N +  +AL ++ +MR NG++ D  T+++V SAC+ +G LE GK++H +    G
Sbjct: 272 MITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQG 331

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  DV + SAL+D Y+K                               CG ++ +  IF 
Sbjct: 332 LNLDVYIGSALVDMYAK-------------------------------CGSLDLSLLIFF 360

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            + +K+L  WN++I GL+ +G   +AL +F  M +  +  +  +  S++SAC +   ++ 
Sbjct: 361 KLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDE 420

Query: 455 GEQVFARVT 463
           G   F  +T
Sbjct: 421 GRSRFLSMT 429



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 147/307 (47%), Gaps = 38/307 (12%)

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           S++  L+G C      N +       D F +   IS       ++     F +  + +  
Sbjct: 50  STINELHGLCASMIKTNAI------QDCFLVHQFISASFALNSVHYPVFAFTQMENPNVF 103

Query: 271 MWNSMISGYISNNEDTEALLLF-HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           ++N+MI G++       AL  + H +  + VL  + T +S++ AC+ +  +E G+ VH H
Sbjct: 104 VYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCH 163

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDA-------C----------------------- 359
             K G    + V +AL+D YSK  + S+A       C                       
Sbjct: 164 IWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSA 223

Query: 360 -KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
            KLF E+   +T   NTMI  Y+  G +E A+ +F  MP K +ISW +MI   SQN    
Sbjct: 224 RKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQ 283

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           +AL ++  M    +  D+ ++++V SACA+I +LELG+++   V   GL+ D  I ++LV
Sbjct: 284 DALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALV 343

Query: 479 DFYCKCG 485
           D Y KCG
Sbjct: 344 DMYAKCG 350


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 225/508 (44%), Gaps = 108/508 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G Q+    +  G+ N  + +AN L+ M+   G   DA  LFD M   +  SWNAMI  + 
Sbjct: 466 GLQVASQVIVSGLQNQ-VSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYS 524

Query: 84  KLGHKEKSLQLFN-------------------VMPQKNDFSW------------------ 106
             G   K   +F+                   V    + FS                   
Sbjct: 525 HQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVT 584

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L++ ++ AG+L  A  LF +M RR+ I+WN+MI  YV+N  + +A++   +L    
Sbjct: 585 VINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQL---F 641

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                 +    ++ +GAC+   AL  GK +H+ +L   L  + ++G+SL+ +YGK     
Sbjct: 642 HTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGK----- 696

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                     C  M DA +VF        V +N +I GY    +
Sbjct: 697 --------------------------CNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLED 730

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVL-SACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
            T+A+ +F  MR  G+  +  T+ ++  S  SS     +G+ +H +  + G + D  VA 
Sbjct: 731 GTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVA- 789

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
                                         N++IT+Y+ CG +E + +IF ++ NK+++S
Sbjct: 790 ------------------------------NSLITMYAKCGNLESSTNIFNSITNKNIVS 819

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN++I    Q G   EAL LF +M     ++D+  LA  +S+CA+++SLE G Q+     
Sbjct: 820 WNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGM 879

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             GLDSD  +  + +D Y KCG  KMDE
Sbjct: 880 KSGLDSDSYVVNAAMDMYGKCG--KMDE 905



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 127/566 (22%), Positives = 230/566 (40%), Gaps = 154/566 (27%)

Query: 40  TLPIA----NRLLQMYMRCGNPTDA---LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92
            LP++    N LL  Y R  + + A   L LFDEM  R   +W   + G ++ G   K+ 
Sbjct: 269 ALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGSHGKAF 328

Query: 93  QLFNVMPQK------------------------------------------NDFSWNMLI 110
           ++   M +                                           N +    L+
Sbjct: 329 EMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALL 388

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
             +   G +  A+ LF +MP RN ++W +++     NG+  EA+R ++++  D V    C
Sbjct: 389 HLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVP---C 445

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +A   ATV+  C  L     G Q+ S ++V+GL     + +SL+ ++G            
Sbjct: 446 NANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFG------------ 493

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                              N G+++DA ++FDR  +  ++ WN+MIS Y      ++  L
Sbjct: 494 -------------------NLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFL 534

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK------VGVID------- 337
           +F  MR +G+  DA+TL S++S C+S     HG  +H    +      V VI+       
Sbjct: 535 VFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYS 594

Query: 338 ------------------DVIVASALLDTYSKRGMPSDACKLFSEL-------------- 365
                             D+I  + ++ +Y +    +DA K   +L              
Sbjct: 595 AAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSS 654

Query: 366 --------------KVYDTILL-----------NTMITVYSSCGRIEDAKHIFRTMPNKS 400
                         K+   I+L           N++IT+Y  C  +EDA+ +F++MP   
Sbjct: 655 ALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHD 714

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE-LGEQVF 459
           ++S+N +I G +      +A+ +F  M    ++ +  ++ ++  + A+ + L   G  + 
Sbjct: 715 IVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLH 774

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCG 485
           A +   G  SD+ ++ SL+  Y KCG
Sbjct: 775 AYIIRTGFLSDEYVANSLITMYAKCG 800



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 188/408 (46%), Gaps = 33/408 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C +      G  +H   L+   L+S++ + N L+ MY   G  +DA  LF  M
Sbjct: 551 LCSLMSVCASSDHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNM 609

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKAGEL---K 120
            RR+  SWN MI  +++  +   +L    QLF+     N  +++  +   +  G L   K
Sbjct: 610 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 669

Query: 121 TARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
               +   +  +RN +  NS+I  Y +     +A ++F+ + +        D      +I
Sbjct: 670 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-------DIVSYNVLI 722

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---- 235
           G  A L       Q+ S +   G+  + +   +++N++G    F S+N + N  +     
Sbjct: 723 GGYAVLEDGTKAMQVFSWMRSAGIKPNYI---TMINIHGS---FASSNDLHNYGRPLHAY 776

Query: 236 -------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                   D++  ++LI+ YA CG +  +  +F+  T+ + V WN++I+  +      EA
Sbjct: 777 IIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEA 836

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L LF  M+  G   D   LA  LS+C+SL  LE G Q+HG   K G+  D  V +A +D 
Sbjct: 837 LKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDM 896

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
           Y K G   +  ++  +  +      NT+I+ Y+  G  ++A+  F+ M
Sbjct: 897 YGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQM 944



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 173/403 (42%), Gaps = 76/403 (18%)

Query: 12   LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
            L +C++  ++  GK +H   L+   L   L + N L+ MY +C +  DA  +F  MP  +
Sbjct: 656  LGACSSPGALIDGKMVHAIVLQLS-LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHD 714

Query: 72   CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------- 100
              S+N +I G+  L    K++Q+F+ M                                 
Sbjct: 715  IVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLH 774

Query: 101  ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                      +++  N LI+ +AK G L+++  +FN +  +N ++WN++I   V+ G   
Sbjct: 775  AYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGE 834

Query: 152  EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            EA++LF ++        + D   LA  + +CA LA+LE G Q+H   + +GLD DS + +
Sbjct: 835  EALKLFIDMQH---AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVN 891

Query: 212  SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
            + +++YGK                               CGKM++  +V           
Sbjct: 892  AAMDMYGK-------------------------------CGKMDEMLQVVPDQAIRPQQC 920

Query: 272  WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-A 330
            WN++ISGY       EA   F +M   G   D  T  ++LSACS  G ++ G   +   A
Sbjct: 921  WNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMA 980

Query: 331  CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
               GV   +     ++D   + G  ++A K   E+ V    L+
Sbjct: 981  SSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLI 1023



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 153/371 (41%), Gaps = 68/371 (18%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           LF++M  R    W + +   VR G   +A  + + +    V       F LA+++ AC  
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVP---LSGFALASLVTACER 355

Query: 185 LA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
                 +  G  IH+     GL  +  +G++L++LYG                       
Sbjct: 356 RGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYG----------------------- 392

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                   + G ++DA+R+F    + + V W +++    SN    EAL  + +MRR+GV 
Sbjct: 393 --------SRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVP 444

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +A+  A+V+S C SL     G QV       G+ + V VA                   
Sbjct: 445 CNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVA------------------- 485

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                       N++IT++ + GR+ DA+ +F  M     ISWN+MI   S  G   +  
Sbjct: 486 ------------NSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCF 533

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
            +F +M    LR D  +L S++S CA+      G  + +      LDS   +  +LV+ Y
Sbjct: 534 LVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMY 593

Query: 482 CKCGFIKMDEY 492
              G +   E+
Sbjct: 594 SAAGKLSDAEF 604



 Score = 44.7 bits (104), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FD   D +   W + +SG +    D  A  +   MR  GV      LAS+++AC   G 
Sbjct: 76  LFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGR 135

Query: 320 LEH---GKQVHGHACKVGVIDDVIVASALL 346
            E    G  +H    + G++ +V +  ALL
Sbjct: 136 DEGIACGAAIHALTHRAGLMGNVYIGRALL 165


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 217/486 (44%), Gaps = 110/486 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    ++  G+Q+H H LK G  +  + +   L+ MY + G   DA  +FD    R
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLG-YDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHR 129

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A                               LI+G+A  G +  AR LF+++ 
Sbjct: 130 HVVSYTA-------------------------------LITGYASRGYINNARKLFDEIS 158

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+MI  YV     +EA+ L+K++   +   ++ D   + TV+ ACA   ++E 
Sbjct: 159 VKDVVSWNAMISGYVETCNFKEALELYKDM---MKTNVKPDESTMVTVVSACAQSGSIEL 215

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G   +  + + L++LY KCG+  +A                        
Sbjct: 216 GRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA------------------------ 251

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG       +F        + WN++I G+   N   EALLLF +M R+G   +  T+ SV
Sbjct: 252 CG-------LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L AC+ LG ++ G+ +H +  K   GV +   + ++L+D Y+K                 
Sbjct: 305 LPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAK----------------- 347

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE AK +F +M  +SL SWN+MI G + +G    A DLF  M 
Sbjct: 348 --------------CGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMR 393

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC------ 482
           K  +  D  +   ++SAC++   L+LG  +F       +  D  I+  L  + C      
Sbjct: 394 KNGIDPDDITFVGLLSACSHSGMLDLGRHIFR-----SMSQDYKITPKLEHYGCMIDLLG 448

Query: 483 KCGFIK 488
            CG  K
Sbjct: 449 HCGLFK 454



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 184/372 (49%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  N  +  A++L+  + S     L  +++    +
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMIS---LGLLPNSYSFPFL 71

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   AL  G+QIH H+L  G D D  + +SL+++Y + G    A++V +       
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G +N+AR++FD  +    V WN+MISGY+      EAL L+  M + 
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ +V+SAC+  G +E G+Q+H      G   ++ + + L+D YSK G    A
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I                               SWN++I G +      
Sbjct: 252 CGLFQGLAKKDVI-------------------------------SWNTLIGGHTHMNLYK 280

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
           EAL LF  M +     +  ++ SV+ ACA++ ++++G    V+    + G+ +   + TS
Sbjct: 281 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTS 340

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 341 LIDMYAKCGDIE 352


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 65/433 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H+G+ +H H +K  + + TL ++NRL+ +Y    +P  A+                   
Sbjct: 56  LHLGRAVHAHLVKTALTSHTL-LSNRLVALYSSLPSPAAAV------------------- 95

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE-LKTARTLFNDMP--RRNAIAW 137
                       + F  +P KN  S+N L++   +  + L  A  LF+ MP   RN +++
Sbjct: 96  ------------KAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSY 143

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSD--LVERLQCDAFILATVIGACADLAALEYGKQIH 195
           N+++     +G   EA+R+   L  D  L   L  D F + +V  ACA + A    +++H
Sbjct: 144 NTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMH 203

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             ++V+G++F  ++ ++++N Y K      A  + + +   D+   +++ISGY    K++
Sbjct: 204 GAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLH 263

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A +VFD   D   + W ++ISG+  N E+  AL LF +M   GV      L S L AC+
Sbjct: 264 EAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACA 323

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            LG +  GK++H   C +                 +R + S    +F         + N 
Sbjct: 324 KLGLVTRGKELH---CFI----------------LRRNIGSVPFNIF---------IHNA 355

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           ++ +YS CG +  A  +F  MP +  ISWNSM+ G S NG   ++L +F  M    +R  
Sbjct: 356 LVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPT 415

Query: 436 KFSLASVISACAN 448
             +  +V++AC++
Sbjct: 416 HVTFLAVLTACSH 428



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 150/309 (48%), Gaps = 11/309 (3%)

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+ +H+H++   L   ++L + LV LY       +A +    +   +    + L++ 
Sbjct: 56  LHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAA 115

Query: 248 Y-ANCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNEDTEALLLFHKMRRN-----G 299
                  + DA R+FD     S   V +N+++S    +    EAL +  ++ R+     G
Sbjct: 116 LLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPG 175

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D  T+ SV +AC+ +G     +++HG     G+   VI+A+A+L+ YSK     DA 
Sbjct: 176 LAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDAR 235

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            LF ++ + D +   +MI+ Y    ++ +A  +F  MP+K  I+W ++I G  QNG    
Sbjct: 236 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 295

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV---FARVTIIGLDSDQIISTS 476
           AL+LF  M    +    F L S + ACA +  +  G+++     R  I  +  +  I  +
Sbjct: 296 ALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNA 355

Query: 477 LVDFYCKCG 485
           LVD Y KCG
Sbjct: 356 LVDMYSKCG 364



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 69/364 (18%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NAM+  + K    E +  LF+ +  +++ +W  +ISG+ +  +L  A  +F+ MP ++ I
Sbjct: 219 NAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRI 278

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           AW ++I  + +NG    A+ LF+++   L + +    F+L + +GACA L  +  GK++H
Sbjct: 279 AWTALISGHEQNGEEDTALELFEQM---LAKGVSPTPFVLVSALGACAKLGLVTRGKELH 335

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             IL   +      GS   N+                      F  +AL+  Y+ CG M 
Sbjct: 336 CFILRRNI------GSVPFNI----------------------FIHNALVDMYSKCGDMM 367

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  VFD   +   + WNSM++G+  N    ++L +F +M   GV     T  +VL+ACS
Sbjct: 368 AAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACS 427

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-----------RGMPS-------- 356
             G + +G+ V       GV       +A +D   +           + +PS        
Sbjct: 428 HSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAG 487

Query: 357 ------DACKLFSELKVYDTIL-------------LNTMITVYSSCGRIEDAKHIFRTMP 397
                  AC+L   +++ + +                 M  +Y++ G+ +DA+ +   M 
Sbjct: 488 SWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMK 547

Query: 398 NKSL 401
            K L
Sbjct: 548 EKGL 551



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP----IANRLLQMYMRCGNPTDALLL 63
           L   L +C     +  GK+LH   L++ I   ++P    I N L+ MY +CG+   A+ +
Sbjct: 315 LVSALGACAKLGLVTRGKELHCFILRRNI--GSVPFNIFIHNALVDMYSKCGDMMAAMAV 372

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGEL 119
           FD MP R+  SWN+M+ GF   G  ++SL +F  M     +    ++  +++  + +G +
Sbjct: 373 FDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLV 432

Query: 120 KTARTLFNDM------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
              R +   M      PR  A  + + I    RN    EA    K+L S +       A 
Sbjct: 433 SNGRLVLESMEDHGVEPR--AEHYAAFIDALGRNHQLEEATEFIKDLPSRIG---PGTAG 487

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
               ++GAC     +E  +++ +  L      +S     + N+Y   G ++ A +V  +M
Sbjct: 488 SWGALLGACRLHGNIELAEEV-AEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLM 546

Query: 234 KE 235
           KE
Sbjct: 547 KE 548


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 204/450 (45%), Gaps = 78/450 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL S     S +V    H H       N+ +  +N+L+  Y+RCG+   A+ +F++M  +
Sbjct: 15  LLTSSFVTLSKYVSSHTHQHEFN----NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVK 70

Query: 71  NCFSWNAMIEGFMK-LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           +  +WN+++  F K  GH E + QLF  +PQ N  S+N++++       +  AR  F+ M
Sbjct: 71  STVTWNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSM 130

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
           P ++  +WN+MI    + G   EA RLF    S + E+                      
Sbjct: 131 PLKDVASWNTMISALAQVGLMGEARRLF----SAMPEK---------------------- 164

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
                           + V  S++V+ Y  CGD ++A +             +A+I+GY 
Sbjct: 165 ----------------NCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYM 208

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             G++  A R+F   +  + V WN+MI+GY+ N    + L LF  M   GV  +A +L S
Sbjct: 209 KFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTS 268

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           VL  CS+L  L+ GKQVH   CK  +  D    ++L+  YSK G   DA +LF ++   D
Sbjct: 269 VLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKD 328

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            +  N MI+                               G +Q+G+  +AL LF  M K
Sbjct: 329 VVCWNAMIS-------------------------------GYAQHGAGKKALRLFDEMKK 357

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVF 459
             L+ D  +  +V+ AC +   ++LG Q F
Sbjct: 358 EGLKPDWITFVAVLLACNHAGLVDLGVQYF 387



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 155/299 (51%), Gaps = 10/299 (3%)

Query: 192 KQIHSHILVNGLDFDSVLGSS-LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           K + SH   +  + ++V+ S+ L+  Y +CGD +SA +V   MK       +++++ +A 
Sbjct: 25  KYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAK 84

Query: 251 -CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             G    AR++F++    ++V +N M++ +  +    +A   F  M     L+D ++  +
Sbjct: 85  KPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMP----LKDVASWNT 140

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           ++SA + +G +   +++     +     + +  SA++  Y   G    A + F    +  
Sbjct: 141 MISALAQVGLMGEARRLFSAMPE----KNCVSWSAMVSGYVACGDLDAAVECFYAAPMRS 196

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            I    MIT Y   GR+E A+ +F+ M  ++L++WN+MI G  +NG   + L LF  M +
Sbjct: 197 VITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLE 256

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             ++ +  SL SV+  C+N+S+L+LG+QV   V    L SD    TSLV  Y KCG +K
Sbjct: 257 TGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLK 315



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 29/243 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C+   ++ +GKQ+H   + K  L+S       L+ MY +CG+  DA  LF ++
Sbjct: 266 LTSVLLGCSNLSALQLGKQVH-QLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQI 324

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
           PR++   WNAMI G+ + G  +K+L+LF+ M +   K D+ ++  ++     AG +    
Sbjct: 325 PRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGV 384

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M R   I      +  M+    R G   EAV L K +        +    I  T+
Sbjct: 385 QYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMP------FKPHPAIYGTL 438

Query: 179 IGAC---ADLAALEYGKQIHSHILVNGLDFDSVLGS---SLVNLYGKCGDFNSANQVLNM 232
           +GAC    +L   E+  +       N L+ D  + +    L N+Y     ++    +   
Sbjct: 439 LGACRIHKNLNLAEFAAK-------NLLELDPTIATGYVQLANVYAAQNRWDHVASIRRS 491

Query: 233 MKE 235
           MK+
Sbjct: 492 MKD 494


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 234/534 (43%), Gaps = 119/534 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75

Query: 72  CFSWNAMIEGFMKLGHKEKS--------LQLFNVMP------------------------ 99
             +WNAM+ G+   G    +        +Q+  + P                        
Sbjct: 76  LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135

Query: 100 ---------QKNDFSWNMLISG----------FAKAGELKTARTLFNDMPRRNAIAWNSM 140
                      N  S + L  G          +AK G L  AR +F+ MP RN + W+++
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 195

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  +V      +A  LFK + +  +  L   +  +A+ + ACA L  L  G+Q+H+ +  
Sbjct: 196 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAK 253

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G+  D   G+SL+++Y K                                G ++ A  +
Sbjct: 254 SGVHADLTAGNSLLSMYAKA-------------------------------GLIDQAIAL 282

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD      +V +++++SGY+ N    EA L+F KM+   V  DA+T+ S++ ACS L  L
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           +HG+  HG          VI+          RG+ S+            T + N +I +Y
Sbjct: 343 QHGRCSHG---------SVII----------RGLASE------------TSICNALIDMY 371

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           + CGRI+ ++ +F  MP++ ++SWN+MI G   +G   EA  LF  MN L    D  +  
Sbjct: 372 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 431

Query: 441 SVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
            ++SAC++   +  G+  F  +    GL         +VD   + GF  +DE Y
Sbjct: 432 CLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF--LDEAY 483



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 192/463 (41%), Gaps = 118/463 (25%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH +   K  L   + +   LL MY +CG+   A  +FD MP RN  +W+A+I GF+   
Sbjct: 144 LHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCS 203

Query: 87  HKEKSLQLFNVMPQKN---------------------------------------DFS-W 106
              ++  LF  M  +                                        D +  
Sbjct: 204 RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 263

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+S +AKAG +  A  LF++M  ++ +++++++  YV+NG A EA  +FK++ +  VE
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               DA  + ++I AC+ LAAL++G+  H  +++ GL  ++ + ++L+++Y KCG  + +
Sbjct: 324 P---DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLS 380

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            QV NMM   D                                V WN+MI+GY  +    
Sbjct: 381 RQVFNMMPSRD-------------------------------IVSWNTMIAGYGIHGLGK 409

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK---QVHGHA-----------CK 332
           EA  LF +M   G   D  T   +LSACS  G +  GK    V GH            C 
Sbjct: 410 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 333 V------GVID-------------DVIVASALLD---TYSKRGMPSDACKLFSELKVYDT 370
           V      G +D             DV V  ALL     Y    +     ++  EL    T
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 529

Query: 371 ILLNTMITVYSSCGRIEDAKHI--------FRTMPNKSLISWN 405
                +  +YS+ GR ++A  +        F+  P  S I  N
Sbjct: 530 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 142/335 (42%), Gaps = 71/335 (21%)

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L  R+  + +     + AC+ LA    G+ IH H +  GL  D  + ++L+++Y KC   
Sbjct: 2   LRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACL 61

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A  +   M   D    +A+++GYA+ G                  M++  ++  +S  
Sbjct: 62  PDAAHIFATMPARDLVAWNAMLAGYAHHG------------------MYHHAVAHLLSMQ 103

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH---AC-------KV 333
                 +  H++R N     ASTL ++L   +  G L  G  VH +   AC       K 
Sbjct: 104 ------MQMHRLRPN-----ASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKS 152

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            + D V++ +ALLD Y+K                               CG +  A+ +F
Sbjct: 153 KLTDGVLLGTALLDMYAK-------------------------------CGSLLYARRVF 181

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSL 452
             MP ++ ++W+++I G        +A  LF  M    L  +   S+AS + ACA++  L
Sbjct: 182 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHL 241

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +GEQ+ A +   G+ +D     SL+  Y K G I
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 40/194 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 68  PRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFS---------------- 105
             ++  S++A++ G+++ G  E      K +Q  NV P                      
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LI  +AK G +  +R +FN MP R+ ++WN+MI  Y  +G
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406

Query: 149 FAREAVRLFKELNS 162
             +EA  LF E+N+
Sbjct: 407 LGKEATALFLEMNN 420



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 43/203 (21%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M R+ V  +  T    L ACS+L     G+ +H HA   G+  D+ V++ALLD Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             DA  +F+ +   D                               L++WN+M+ G + +
Sbjct: 61  LPDAAHIFATMPARD-------------------------------LVAWNAMLAGYAHH 89

Query: 415 GSPIEALD--LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA----------RV 462
           G    A+   L   M    LR +  +L +++   A   +L  G  V A          R 
Sbjct: 90  GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 149

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
           +   L    ++ T+L+D Y KCG
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCG 172


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 231/521 (44%), Gaps = 111/521 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLK--KGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           L RLL SC T  S+ V   LH   L   +G+L  +L    +LL  Y   G+   A ++FD
Sbjct: 32  LLRLLPSCGTLPSLRV---LHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFD 88

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND---------------- 103
             PR + +S+  M+   ++     +++ L   M      P+  D                
Sbjct: 89  GTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSAD 148

Query: 104 -------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                              F  N L+  +AKAG+L+ AR +F  +P RN ++W SM+   
Sbjct: 149 YGYGTRLHCDAVKVGGADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGC 208

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V+NGFA + + LF ++  D V   +   + +ATVI AC+ L  L  G+ +H  ++  GL 
Sbjct: 209 VQNGFAADGLLLFNKMRQDNVPPSE---YTIATVITACSALIGLHQGRWMHGSVIKQGLM 265

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +S + ++L+++Y K                               CG++ DA+ VFD  
Sbjct: 266 SNSFISAALLDMYVK-------------------------------CGELEDAQCVFDEL 294

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           +    V+W +MI GY  N    +AL LF   +   ++ ++ T+A+VLSA + L  L  G+
Sbjct: 295 SYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGR 354

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +HG A K+G+++  +V +AL+D Y+K    S+A ++F  +   D +  N+M++ Y+   
Sbjct: 355 SIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENN 414

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
              DA  +F+ M  K                SP                 D  S+   +S
Sbjct: 415 MCNDALMLFKQMSLK--------------GPSP-----------------DAISVVHALS 443

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           A   +  L +G+            S+  +ST+L++ Y KCG
Sbjct: 444 ASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCG 484



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 210/491 (42%), Gaps = 106/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L++C        G +LH   +K G  +    + N L+ MY + G+   A  +F+ +
Sbjct: 136 LSLALKACIRSADYGYGTRLHCDAVKVGGADGF--VMNSLVDMYAKAGDLECARKVFERI 193

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P RN  SW +M+ G ++ G     L LFN M Q                           
Sbjct: 194 PGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGR 253

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        N F    L+  + K GEL+ A+ +F+++   + + W +MI  Y +NG
Sbjct: 254 WMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNG 313

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+RLF +        +  ++  +ATV+ A A L  L  G+ IH   +  GL   +V
Sbjct: 314 NPLDALRLFLDKK---FANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTV 370

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LV++Y K                               C  +++A R+F   ++  
Sbjct: 371 VVNALVDMYAK-------------------------------CQAVSEANRIFGSISNKD 399

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSM+SGY  NN   +AL+LF +M   G   DA ++   LSA   LG L  GK  HG
Sbjct: 400 VVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHG 459

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +A K   + ++ V++ALL+ Y+K                               CG +  
Sbjct: 460 YAVKHAFLSNIYVSTALLNLYNK-------------------------------CGDLPS 488

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  M +++ ++W +MI G    G    ++DLF  M K  +  +  +  S++S C++
Sbjct: 489 ARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSH 548

Query: 449 ISSLELGEQVF 459
              +   ++ F
Sbjct: 549 TGMVTAAKRYF 559


>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 454

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 184/381 (48%), Gaps = 82/381 (21%)

Query: 123 RTLFND-MPRRNAIAWNSMIHCYVRNGFAREAVRLF---KELNSDLVERLQCDAFILATV 178
           RT FN    + N  +WNS+I    R+G + E++R F   ++LN      L+ +       
Sbjct: 35  RTWFNKYFEKTNVFSWNSLIADLARSGDSIESLRAFYSMRKLN------LKPNRSTFPCA 88

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           I AC+ L  L +GKQ H   LV G                                E D 
Sbjct: 89  IKACSSLLDLHWGKQTHQQALVFGF-------------------------------ESDL 117

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM--- 295
           F  SAL+  Y+ CG+++DAR +FD  T  + V+W SMI+GYI N+   EALLLF +    
Sbjct: 118 FVSSALVDMYSKCGRLSDARILFDEITHRNIVIWTSMITGYIQNDHAHEALLLFKQFLIE 177

Query: 296 ------RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
                  ++ VL D+  + SVLSACS +      K VHG   K G+ +DV + + LLD Y
Sbjct: 178 ESERNEEKDEVLMDSVAMVSVLSACSRISGKGMTKGVHGFVVKKGLDEDVGIENTLLDAY 237

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +K                               CG +  ++ +F  +  K  ISWNSMI 
Sbjct: 238 AK-------------------------------CGEVGVSRQVFDEIVEKDAISWNSMIA 266

Query: 410 GLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
             +QNG   EA ++F  M K   ++ +  +L++++ ACA+  +L+ G+ +  +V  +GLD
Sbjct: 267 VYAQNGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACAHSGALQTGKCIHDQVIRMGLD 326

Query: 469 SDQIISTSLVDFYCKCGFIKM 489
            + I+ TSL+D YCKCG ++M
Sbjct: 327 DNVIVGTSLIDMYCKCGRVQM 347



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 195/434 (44%), Gaps = 108/434 (24%)

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKN-------------DFSW-- 106
            + N FSWN++I    + G   +SL+ F      N+ P ++             D  W  
Sbjct: 43  EKTNVFSWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFPCAIKACSSLLDLHWGK 102

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + L+  ++K G L  AR LF+++  RN + W SMI  Y++N 
Sbjct: 103 QTHQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRNIVIWTSMITGYIQND 162

Query: 149 FAREAVRLFKELNSDLVER------LQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            A EA+ LFK+   +  ER      +  D+  + +V+ AC+ ++     K +H  ++  G
Sbjct: 163 HAHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISGKGMTKGVHGFVVKKG 222

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           LD D  + ++L++ Y KCG+   + QV + + E D    +++I+ YA             
Sbjct: 223 LDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDAISWNSMIAVYAQ------------ 270

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLE 321
                              N   +EA  +FH M + G ++ +A TL+++L AC+  G L+
Sbjct: 271 -------------------NGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACAHSGALQ 311

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK +H    ++G+ D+VIV ++L+D Y K                              
Sbjct: 312 TGKCIHDQVIRMGLDDNVIVGTSLIDMYCK------------------------------ 341

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CGR++ A+  F  M  K++ SW +M+ G   +G   EAL++F  M +  ++ +  +  S
Sbjct: 342 -CGRVQMARKTFDGMKEKNVKSWTAMVAGYGMHGCAREALNIFYKMIRSGVKPNYITFVS 400

Query: 442 VISACANISSLELG 455
           V++AC++   L+ G
Sbjct: 401 VLAACSHAGLLDEG 414



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 173/360 (48%), Gaps = 82/360 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +++C++   +H GKQ H   L  G   S L +++ L+ MY +CG  +DA +LFDE+  RN
Sbjct: 89  IKACSSLLDLHWGKQTHQQALVFG-FESDLFVSSALVDMYSKCGRLSDARILFDEITHRN 147

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNML---------------ISG 112
              W +MI G+++  H  ++L LF        ++N+    +L               ISG
Sbjct: 148 IVIWTSMITGYIQNDHAHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISG 207

Query: 113 -----------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                        +AK GE+  +R +F+++  ++AI+WNSMI  
Sbjct: 208 KGMTKGVHGFVVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDAISWNSMIAV 267

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y +NG + EA  +F  +       ++ +A  L+T++ ACA   AL+ GK IH  ++  GL
Sbjct: 268 YAQNGLSSEAFEVFHGMIK--YGYVKYNAVTLSTLLLACAHSGALQTGKCIHDQVIRMGL 325

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D + ++G+SL+++Y KCG    A +  + MKE +    +A+++GY     M+   R    
Sbjct: 326 DDNVIVGTSLIDMYCKCGRVQMARKTFDGMKEKNVKSWTAMVAGYG----MHGCAR---- 377

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
                                  EAL +F+KM R+GV  +  T  SVL+ACS  G L+ G
Sbjct: 378 -----------------------EALNIFYKMIRSGVKPNYITFVSVLAACSHAGLLDEG 414


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 65/433 (15%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H+G+ +H H +K  + + TL ++NRL+ +Y    +P  A+                   
Sbjct: 48  LHLGRAVHAHLVKTALTSHTL-LSNRLVALYSSLPSPAAAV------------------- 87

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGE-LKTARTLFNDMP--RRNAIAW 137
                       + F  +P KN  S+N L++   +  + L  A  LF+ MP   RN +++
Sbjct: 88  ------------KAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSY 135

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSD--LVERLQCDAFILATVIGACADLAALEYGKQIH 195
           N+++     +G   EA+R+   L  D  L   L  D F + +V  ACA + A    +++H
Sbjct: 136 NTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMH 195

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             ++V+G++F  ++ ++++N Y K      A  + + +   D+   +++ISGY    K++
Sbjct: 196 GAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLH 255

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           +A +VFD   D   + W ++ISG+  N E+  AL LF +M   GV      L S L AC+
Sbjct: 256 EAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACA 315

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            LG +  GK++H   C +                 +R + S    +F         + N 
Sbjct: 316 KLGLVTRGKELH---CFI----------------LRRNIGSVPFNIF---------IHNA 347

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           ++ +YS CG +  A  +F  MP +  ISWNSM+ G S NG   ++L +F  M    +R  
Sbjct: 348 LVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPT 407

Query: 436 KFSLASVISACAN 448
             +  +V++AC++
Sbjct: 408 HVTFLAVLTACSH 420



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 150/309 (48%), Gaps = 11/309 (3%)

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+ +H+H++   L   ++L + LV LY       +A +    +   +    + L++ 
Sbjct: 48  LHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAA 107

Query: 248 Y-ANCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNEDTEALLLFHKMRRN-----G 299
                  + DA R+FD     S   V +N+++S    +    EAL +  ++ R+     G
Sbjct: 108 LLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPG 167

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +  D  T+ SV +AC+ +G     +++HG     G+   VI+A+A+L+ YSK     DA 
Sbjct: 168 LAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDAR 227

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
            LF ++ + D +   +MI+ Y    ++ +A  +F  MP+K  I+W ++I G  QNG    
Sbjct: 228 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 287

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV---FARVTIIGLDSDQIISTS 476
           AL+LF  M    +    F L S + ACA +  +  G+++     R  I  +  +  I  +
Sbjct: 288 ALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNA 347

Query: 477 LVDFYCKCG 485
           LVD Y KCG
Sbjct: 348 LVDMYSKCG 356



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 69/364 (18%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NAM+  + K    E +  LF+ +  +++ +W  +ISG+ +  +L  A  +F+ MP ++ I
Sbjct: 211 NAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRI 270

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           AW ++I  + +NG    A+ LF+++   L + +    F+L + +GACA L  +  GK++H
Sbjct: 271 AWTALISGHEQNGEEDTALELFEQM---LAKGVSPTPFVLVSALGACAKLGLVTRGKELH 327

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             IL   +      GS   N+                      F  +AL+  Y+ CG M 
Sbjct: 328 CFILRRNI------GSVPFNI----------------------FIHNALVDMYSKCGDMM 359

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  VFD   +   + WNSM++G+  N    ++L +F +M   GV     T  +VL+ACS
Sbjct: 360 AAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACS 419

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK-----------RGMPS-------- 356
             G + +G+ V       GV       +A +D   +           + +PS        
Sbjct: 420 HSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTAG 479

Query: 357 ------DACKLFSELKVYDTIL-------------LNTMITVYSSCGRIEDAKHIFRTMP 397
                  AC+L   +++ + +                 M  +Y++ G+ +DA+ +   M 
Sbjct: 480 SWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMK 539

Query: 398 NKSL 401
            K L
Sbjct: 540 EKGL 543



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 22/242 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP----IANRLLQMYMRCGNPTDALLL 63
           L   L +C     +  GK+LH   L++ I   ++P    I N L+ MY +CG+   A+ +
Sbjct: 307 LVSALGACAKLGLVTRGKELHCFILRRNI--GSVPFNIFIHNALVDMYSKCGDMMAAMAV 364

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGEL 119
           FD MP R+  SWN+M+ GF   G  ++SL +F  M     +    ++  +++  + +G +
Sbjct: 365 FDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLV 424

Query: 120 KTARTLFNDM------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
              R +   M      PR  A  + + I    RN    EA    K+L S +       A 
Sbjct: 425 SNGRLVLESMEDHGVEPR--AEHYAAFIDALGRNHQLEEATEFIKDLPSRIG---PGTAG 479

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
               ++GAC     +E  +++ +  L      +S     + N+Y   G ++ A +V  +M
Sbjct: 480 SWGALLGACRLHGNIELAEEV-AEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLM 538

Query: 234 KE 235
           KE
Sbjct: 539 KE 540


>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 251/531 (47%), Gaps = 92/531 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
             ++LQ+C     +   K +H   ++ G L+  + ++N +L  +++CG  + A   F  M
Sbjct: 183 FPKILQACGNCEDLETVKLIHSLVIRCG-LSCYMRLSNSILTAFVKCGKLSLARKFFGNM 241

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELKTAR 123
             R+  SWN MI G+ + G+ +++ +L + M  +       ++N++I+ +++ G+     
Sbjct: 242 DERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVI 301

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            L   M       +   W SMI  + ++    +A+  FK++   ++  ++ +   +A+  
Sbjct: 302 DLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKM---ILAGVEPNTITIASAT 358

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            ACA L +L+ G +IH   +  G+  ++++G+SL+++Y KCG   +A  V + + E D +
Sbjct: 359 SACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVY 418

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSS----VMWNSMISGYISNNEDTEALLLFHKM 295
             +++I GY   G    A  +F R  +++     V WN+MISG I N ++ +A+ LF  M
Sbjct: 419 TWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQIM 478

Query: 296 RRNGVLE------------------------------------DASTLASVLSACSSLGF 319
            ++G ++                                    ++ T+ S+L AC+++  
Sbjct: 479 EKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMA 538

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
            +  K++HG   +  +  ++ VA++L+DTY+K                            
Sbjct: 539 EKKIKEIHGCVLRRNLESELAVANSLVDTYAK---------------------------- 570

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
               G I+ ++ +F  M +K +I+WNS+I G   +G    A  LF  M  L +R ++ +L
Sbjct: 571 ---SGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTL 627

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKCG 485
           AS+I A      ++ G  VF+ +T    +  QI+ T     ++VD Y + G
Sbjct: 628 ASIIHAYGIAGMVDKGRHVFSSIT----EEHQILPTLDHYLAMVDLYGRSG 674



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 212/468 (45%), Gaps = 86/468 (18%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N F    L+S +AK G LK AR +F+ M  RN   W++MI  Y R    +E V LF  + 
Sbjct: 113 NPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMM 172

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            D V     DAF+   ++ AC +   LE  K IHS ++  GL     L +S++  + KCG
Sbjct: 173 GDGV---LPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCG 229

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--------TSSVM-- 271
             + A +    M E D    + +I+GY   G  ++ARR+ D  ++        T ++M  
Sbjct: 230 KLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIA 289

Query: 272 -----------------------------WNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                                        W SMISG+  ++  ++AL  F KM   GV  
Sbjct: 290 SYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEP 349

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +  T+AS  SAC+SL  L++G ++H  A K+G+  + +V ++L+D YSK G    A  +F
Sbjct: 350 NTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVF 409

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIF------RTMPNKSLISWNSMIVGLSQNGS 416
             +   D    N+MI  Y   G    A  +F        MPN  +++WN+MI G  QNG 
Sbjct: 410 DTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPN--VVTWNAMISGCIQNGD 467

Query: 417 PIEALDLFCNMNK------------------------------------LDLRMDKFSLA 440
             +A+DLF  M K                                    L+   +  ++ 
Sbjct: 468 EDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTIL 527

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           S++ ACAN+ + +  +++   V    L+S+  ++ SLVD Y K G IK
Sbjct: 528 SILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIK 575



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 187/421 (44%), Gaps = 79/421 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A    +C +  S+  G ++H   +K GI   TL + N L+ MY +CG    A  +FD +
Sbjct: 354 IASATSACASLKSLQNGLEIHCFAIKMGIARETL-VGNSLIDMYSKCGKLEAARHVFDTI 412

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKAGELKT 121
             ++ ++WN+MI G+ + G+  K+ +LF       VMP  N  +WN +ISG  + G+   
Sbjct: 413 LEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMP--NVVTWNAMISGCIQNGDEDQ 470

Query: 122 ARTLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           A  LF  M +     RN  +WNS+I  Y + G   +A+ +F+++ S        ++  + 
Sbjct: 471 AMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQS---LNFSPNSVTIL 527

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           +++ ACA++ A +  K+IH  +L   L+ +  + +SLV+ Y K G+              
Sbjct: 528 SILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGN-------------- 573

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                            +  +R VF+  +    + WNS+I+GYI +     A  LF +MR
Sbjct: 574 -----------------IKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMR 616

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
             G+  +  TLAS++ A    G ++ G+ V                             S
Sbjct: 617 NLGIRPNRGTLASIIHAYGIAGMVDKGRHVF----------------------------S 648

Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNG 415
              +    L   D  L   M+ +Y   GR+ DA      MP +  +S W S++     +G
Sbjct: 649 SITEEHQILPTLDHYL--AMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRFHG 706

Query: 416 S 416
           +
Sbjct: 707 N 707



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 158/378 (41%), Gaps = 74/378 (19%)

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NG  REA+     + S    +L  + +I   ++  C D+ ++E G+++H           
Sbjct: 58  NGLLREAITAIDSI-SKRGSKLSTNTYI--NLLQTCIDVGSIELGRELHVR--------- 105

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                                  + ++   + F  + L+S YA CG + DAR+VFD   +
Sbjct: 106 -----------------------MGLVHRVNPFVETKLVSMYAKCGCLKDARKVFDGMQE 142

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            +   W++MI  Y       E + LF  M  +GVL DA     +L AC +   LE  K +
Sbjct: 143 RNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLI 202

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    + G+   + +++++L  + K G  S A K F  +   D +  N MI  Y   G  
Sbjct: 203 HSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNG 262

Query: 387 EDAKHIFRTMPNKS---------------------------------------LISWNSM 407
           ++A+ +  TM N+                                        + +W SM
Sbjct: 263 DEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSM 322

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G SQ+    +ALD F  M    +  +  ++AS  SACA++ SL+ G ++      +G+
Sbjct: 323 ISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGI 382

Query: 468 DSDQIISTSLVDFYCKCG 485
             + ++  SL+D Y KCG
Sbjct: 383 ARETLVGNSLIDMYSKCG 400



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 40/219 (18%)

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
           SN    EA+     + + G     +T  ++L  C  +G +E G+++H    ++G++  V 
Sbjct: 57  SNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH---VRMGLVHRV- 112

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
                                F E K         ++++Y+ CG ++DA+ +F  M  ++
Sbjct: 113 -------------------NPFVETK---------LVSMYAKCGCLKDARKVFDGMQERN 144

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           L +W++MI   S+     E ++LF  M    +  D F    ++ AC N   LE  + + +
Sbjct: 145 LYTWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHS 204

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCG--------FIKMDE 491
            V   GL     +S S++  + KCG        F  MDE
Sbjct: 205 LVIRCGLSCYMRLSNSILTAFVKCGKLSLARKFFGNMDE 243


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 225/481 (46%), Gaps = 37/481 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   L+ C+ H  +  GKQ+H    K G L S   I N L+ MY +CG   DA  +FD  
Sbjct: 69  LVSALKFCSDHLFLSQGKQIHCLVSKSG-LGSNNFIQNSLINMYGKCGLLVDAKSIFD-- 125

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                        V P+ +  S+N++ISG+ K+G+L  A  LF+
Sbjct: 126 -----------------------------VCPRSDPVSYNVMISGYVKSGQLDYACELFD 156

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFILATVIGACADLA 186
           +MP +  +++ +MI  + +N    +AV LFK++ N  +V     +   +AT++ A +   
Sbjct: 157 EMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVP----NEVTIATLVSAYSHFG 212

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            +   + +H  ++    +   ++ ++L+ +Y  C     A  + + M E +    + +++
Sbjct: 213 GIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLN 272

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
           GY+  G ++ AR VF+R  +   V W ++I GY+      EAL+++  M   G   +   
Sbjct: 273 GYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVM 332

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +  ++S C     +  G+Q+     K+G      + S ++  Y+  G  ++AC  F    
Sbjct: 333 MVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGS 392

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
             +    N +I  Y     I+ A  +F  MP + + SW++MI G +QN  P  AL+LF  
Sbjct: 393 KENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHK 452

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           M    ++ ++ ++ SV+SA A   +L+ G      V    +     +S +++D Y KCG 
Sbjct: 453 MVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGS 512

Query: 487 I 487
           I
Sbjct: 513 I 513



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 199/393 (50%), Gaps = 45/393 (11%)

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
           LF+ MP+KN  SWN++++G++KAG + +AR +F  +P ++ + W ++I  YVR     EA
Sbjct: 255 LFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEA 314

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           + +++ + S   E    +  ++  +I  C    A+  G+Q+ S ++  G D    + S++
Sbjct: 315 LMMYRSMISAGWEP---NDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTI 371

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
           ++LY  CG  N A     +  + +    +ALI+GY     ++ A  +F+   +     W+
Sbjct: 372 IHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWS 431

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG--HAC 331
           +MISGY  N +   AL LFHKM  +G+  +  T+ SVLSA ++ G L+ G+  H   H  
Sbjct: 432 TMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNN 491

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
            + V D+  +++A++D Y+K                               CG I +A  
Sbjct: 492 SITVSDN--LSAAIIDMYAK-------------------------------CGSINNALE 518

Query: 392 IFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +F  +  K  ++  WN++I GL+ +G    +L +F ++ +  ++++  +   V++AC ++
Sbjct: 519 VFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHV 578

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
             +E G++ F     + + S+  I   +  + C
Sbjct: 579 GLVESGKRHF-----MSMKSEHSIDPDIKHYGC 606



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 166/328 (50%)

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           LN    +R      +L + +  C+D   L  GKQIH  +  +GL  ++ + +SL+N+YGK
Sbjct: 54  LNPKTGQRHFNYELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGK 113

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
           CG    A  + ++    D    + +ISGY   G+++ A  +FD       V + +MI G+
Sbjct: 114 CGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGF 173

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             N    +A+ LF +MR  GV+ +  T+A+++SA S  G +   + +HG   K+   + V
Sbjct: 174 SQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFV 233

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
           +V++ LL  Y       +A  LF E+   + +  N M+  YS  G ++ A+ +F  +PNK
Sbjct: 234 LVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNK 293

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            L++W ++I G  +     EAL ++ +M       +   +  +IS C    ++  G+Q+ 
Sbjct: 294 DLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLL 353

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + V  +G D    I ++++  Y  CG I
Sbjct: 354 SAVVKMGFDCYDFIQSTIIHLYAACGRI 381



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 169/407 (41%), Gaps = 95/407 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+  C    ++  G+QL    +K G  +    I + ++ +Y  CG   +A L F      
Sbjct: 336 LISGCGRTMAMTEGQQLLSAVVKMG-FDCYDFIQSTIIHLYAACGRINEACLQF------ 388

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
                        ++G KE            N  SWN LI+G+ +   +  A  LFN+MP
Sbjct: 389 -------------RIGSKE------------NVASWNALIAGYVRNRMIDRAMELFNEMP 423

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+  +W++MI  Y +N     A+ LF ++   +   ++ +   + +V+ A A    L+ 
Sbjct: 424 ERDVFSWSTMISGYTQNEQPNLALELFHKM---VASGIKPNEVTMVSVLSAIATSGTLKE 480

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+  H ++  N +     L ++++++Y KCG  N+A +V   ++E               
Sbjct: 481 GRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIRE--------------- 525

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                       + +  S   WN++I G   +     +L +F  + R  +  +A T   V
Sbjct: 526 ------------KASTVSP--WNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGV 571

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L+AC  +G +E GK+                    +   S+  +  D       +K Y  
Sbjct: 572 LTACCHVGLVESGKR------------------HFMSMKSEHSIDPD-------IKHY-- 604

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGS 416
                M+ +    GR+E+A+ + R+MP K+ ++ W +++     +G+
Sbjct: 605 ---GCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAACRTHGN 648



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 107/245 (43%), Gaps = 33/245 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRL----LQMYMRCGNPTDALLL 63
           +  +L +  T  ++  G+  H +     + N+++ +++ L    + MY +CG+  +AL +
Sbjct: 465 MVSVLSAIATSGTLKEGRWAHEY-----VHNNSITVSDNLSAAIIDMYAKCGSINNALEV 519

Query: 64  FDEMPRR--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAG 117
           F E+  +      WNA+I G    GH   SL++F+ + ++    N  ++  +++     G
Sbjct: 520 FYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVG 579

Query: 118 ELKTARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            +++ +  F  M   ++I      +  M+    R G   EA  + + +       ++ D 
Sbjct: 580 LVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSM------PMKADV 633

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQV 229
            I  T++ AC     ++ G++       N    +   G+S V   N+Y   G +  A  V
Sbjct: 634 VIWGTLLAACRTHGNVDVGERAAE----NLARLEPSHGASRVLLSNMYADAGKWEDAFLV 689

Query: 230 LNMMK 234
              M+
Sbjct: 690 RRAMQ 694


>gi|147859671|emb|CAN83112.1| hypothetical protein VITISV_026574 [Vitis vinifera]
          Length = 833

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 204/449 (45%), Gaps = 80/449 (17%)

Query: 52  MRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
           MR G   +A +LFDEMP+RN  ++NAMI G+ + GH  + + LF+ MP+++ FS+N +I+
Sbjct: 206 MRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIFSYNTMIA 265

Query: 112 GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
           G  K G++  A  +F  MP R+ ++WNSMI  YV NG   EA+R+F              
Sbjct: 266 GLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVF-------------S 312

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
             +L  V+     +A L                    +G   V+L         A +   
Sbjct: 313 GMVLKDVVSWNLVIAGL--------------------VGVGKVDL---------AEEFFK 343

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M   D    + +ISG A+ G++ +AR +F+         WN+MI+GY+ N       +L
Sbjct: 344 EMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWNTMIAGYLENGCIEIGEVL 403

Query: 292 FHKMR---------------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           F KM                RN  +++A  L           F+E  ++     C+    
Sbjct: 404 FQKMPQRDFRSWNEMINGLVRNQRIQNAMRL-----------FVEMPQK-----CRRS-- 445

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
                 ++++    + G+  +A     +    DT+    +I  Y   G ++ A  IF  M
Sbjct: 446 -----WNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIFELM 500

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P +   +WN +I GL +N    E L  F  M +     D+ +  SV++ C+++ +L LG 
Sbjct: 501 PARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGR 560

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           Q+ A+VT  G +    +S ++V  Y +CG
Sbjct: 561 QIHAQVTKTGFNYFVAVSNAMVTLYARCG 589



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 205/466 (43%), Gaps = 82/466 (17%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++ Y + G+  + + LFDEMP R+ FS+N MI G MK G    + ++F  MP ++  
Sbjct: 230 NAMIRGYFQNGHFGEGVSLFDEMPERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVV 289

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-- 162
           SWN +ISG+   G +  A  +F+ M  ++ ++WN +I   V  G    A   FKE+ +  
Sbjct: 290 SWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRD 349

Query: 163 ---------------------DLVERLQC-DAFILATVIGACADLAALEYGKQIHSHI-- 198
                                 L E +   D     T+I    +   +E G+ +   +  
Sbjct: 350 IASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQ 409

Query: 199 --------LVNGLDFDSVLGSSL---VNLYGKC--------------GDFNSANQVLNMM 233
                   ++NGL  +  + +++   V +  KC              G    A+  L   
Sbjct: 410 RDFRSWNEMINGLVRNQRIQNAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKS 469

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              D    + LI GY   G+++ A  +F+      +  WN +I G   N+   E L  F 
Sbjct: 470 PFSDTVSWTNLIVGYFETGEVDTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFV 529

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           KM+  G   D +T  SVL+ CS L  L  G+Q+H    K G    V V++A++  Y++ G
Sbjct: 530 KMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCG 589

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
             + A  LFS +  +D                               +ISWNS+I GL+ 
Sbjct: 590 NSNSALLLFSSMTSHD-------------------------------VISWNSIICGLAH 618

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           NG+ +EA+++F  M   D++ ++ +   V+SAC++   ++ G+  F
Sbjct: 619 NGNGVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYF 664



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 165/384 (42%), Gaps = 61/384 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   +R     +A+ LF EMP++   SWN+++ G ++ G  +++       P  +  
Sbjct: 416 NEMINGLVRNQRIQNAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTV 475

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           SW  LI G+ + GE+ TA ++F  MP R+A AWN +I     N    E ++ F ++    
Sbjct: 476 SWTNLIVGYFETGEVDTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEG- 534

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
                 D     +V+  C+DL  L  G+QIH+ +   G ++   + +++V LY       
Sbjct: 535 --GPFPDEATFTSVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLY------- 585

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                   A CG  N A  +F   T    + WNS+I G   N  
Sbjct: 586 ------------------------ARCGNSNSALLLFSSMTSHDVISWNSIICGLAHNGN 621

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK--------------QVHGHA 330
             EA+ +F KMR   +  +  T   VLSACS  G ++ GK               +  + 
Sbjct: 622 GVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYT 681

Query: 331 C------KVGVIDDVIV------ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM-I 377
           C      + G+ID+ +       A+ +    S  G    AC++   ++V +      + I
Sbjct: 682 CIVDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNIQVGEIAGERILEI 741

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSL 401
             ++ CG+ EDA+ ++  M  K +
Sbjct: 742 EPHNFCGKREDAERVWVRMREKGV 765



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 12/222 (5%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           L++ IS     G   +A+ +FD     ++V +N+MI GY  N    E + LF +M    +
Sbjct: 198 LNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDI 257

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
               + +A ++      G  E  +++           DV+  ++++  Y   G+  +A +
Sbjct: 258 FSYNTMIAGLMKFGDINGASEIFQKMP--------FRDVVSWNSMISGYVSNGLIGEALR 309

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +FS + + D +  N +I      G+++ A+  F+ M  + + SW +MI GL+  G  +EA
Sbjct: 310 VFSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEA 369

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
             LF +M   D+R    +  ++I+       +E+GE +F ++
Sbjct: 370 RGLFEDMPVRDVR----AWNTMIAGYLENGCIEIGEVLFQKM 407



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C+   ++H+G+Q+H    K G  N  + ++N ++ +Y RCGN   ALLLF  M   
Sbjct: 546 VLTICSDLPTLHLGRQIHAQVTKTG-FNYFVAVSNAMVTLYARCGNSNSALLLFSSMTSH 604

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN++I G    G+  +++++F  M     + N  ++  ++S  + AG +   +  F
Sbjct: 605 DVISWNSIICGLAHNGNGVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYF 664

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M  +  +      +  ++    R G   EA+   +++ ++ VE     A +   V+GA
Sbjct: 665 DFMKYKCCLEPTIEHYTCIVDLLGRFGLIDEAMSFLRQMEANGVE---VPASVWGAVLGA 721

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           C          +IH +I V  +  + +L     N    CG    A +V   M+E
Sbjct: 722 C----------RIHKNIQVGEIAGERILEIEPHNF---CGKREDAERVWVRMRE 762



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           +A  L    +++ +P+ + + +S   + +   LN+ I+     G  E+A+ +F  MP ++
Sbjct: 166 LAGVLSLNLTEKWIPTRSIQSYSTSALLNLKPLNSRISDCMRNGFTEEAQMLFDEMPQRN 225

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
            +++N+MI G  QNG   E + LF  M + D+    FS  ++I+       +    ++F 
Sbjct: 226 TVTYNAMIRGYFQNGHFGEGVSLFDEMPERDI----FSYNTMIAGLMKFGDINGASEIFQ 281

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++       D +   S++  Y   G I
Sbjct: 282 KMPF----RDVVSWNSMISGYVSNGLI 304


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 222/510 (43%), Gaps = 106/510 (20%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIE 80
            +G Q+H   +  G   S + +AN L+ MY   G   DA  +FDE    RN  SWN ++ 
Sbjct: 24  QLGAQVHAMAMATG-FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMS 82

Query: 81  GFMKLGHKEKSLQLFNVM------P---------------------------------QK 101
            ++K      ++Q+F  M      P                                 +K
Sbjct: 83  AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEK 142

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           + F+ N L+  + K G +  A  +F  MP  + ++WN++I   V NG    A+ L  ++ 
Sbjct: 143 DVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 202

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           S     L  + F+L++++ ACA   A + G+QIH  ++    D D  +G  LV++Y    
Sbjct: 203 S---SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMY---- 255

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
              + N  L+                        DA +VFD  +    ++WN++ISG   
Sbjct: 256 ---AKNHFLD------------------------DAMKVFDWMSHRDLILWNALISGCSH 288

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
                EA  +F+ +R+ G+  + +TLA+VL + +SL      +QVH  A K+G I D  V
Sbjct: 289 GGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHV 348

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            + L+D+Y K    SDA ++F E    D I + +MIT  S C   E              
Sbjct: 349 VNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEG------------- 395

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
                             A+ LF  M +  L  D F L+S+++ACA++S+ E G+QV A 
Sbjct: 396 ------------------AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 437

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +      SD     +LV  Y KCG I+  E
Sbjct: 438 LIKRQFMSDAFAGNALVYTYAKCGSIEDAE 467



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/521 (25%), Positives = 224/521 (42%), Gaps = 108/521 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    +I  G+Q+H   ++ G        AN L+ MY++ G    A ++F++MP  
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVF-TANALVDMYVKMGRVDIASVIFEKMPDS 173

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ------------------------ 100
           +  SWNA+I G +  GH  ++++L        ++P                         
Sbjct: 174 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 233

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     +D+    L+  +AK   L  A  +F+ M  R+ I WN++I      G   
Sbjct: 234 GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHD 293

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA  +F  L     E L  +   LA V+ + A L A    +Q+H+     G  FD+ + +
Sbjct: 294 EAFSIFYGLRK---EGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 350

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
            L++ Y KC                   CLS             DA RVF+  +    + 
Sbjct: 351 GLIDSYWKCS------------------CLS-------------DAIRVFEECSSGDIIA 379

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
             SMI+     +    A+ LF +M R G+  D   L+S+L+AC+SL   E GKQVH H  
Sbjct: 380 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 439

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K   + D    +AL+ TY+K                               CG IEDA+ 
Sbjct: 440 KRQFMSDAFAGNALVYTYAK-------------------------------CGSIEDAEL 468

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F ++P + ++SW++MI GL+Q+G    AL+LF  M    +  +  ++ SV+ AC +   
Sbjct: 469 AFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGL 528

Query: 452 LELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ++  ++ F  +  + G+D  +   + ++D   + G  K+D+
Sbjct: 529 VDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAG--KLDD 567



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 145/323 (44%), Gaps = 66/323 (20%)

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           E + C+ F L  V+    D    + G Q+H+  +  G   D  + ++LV +YG       
Sbjct: 4   EGVCCNEFALPVVLKCVPDA---QLGAQVHAMAMATGFGSDVFVANALVAMYG------- 53

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT-TDTSSVMWNSMISGYISNNE 284
                                G+   G M+DARRVFD   ++ ++V WN ++S Y+ N++
Sbjct: 54  ---------------------GF---GFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQ 89

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             +A+ +F +M  +G+       + V++AC+    ++ G+QVH    ++G   DV  A+A
Sbjct: 90  CGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANA 149

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+D Y K G                               R++ A  IF  MP+  ++SW
Sbjct: 150 LVDMYVKMG-------------------------------RVDIASVIFEKMPDSDVVSW 178

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++I G   NG    A++L   M    L  + F L+S++ ACA   + +LG Q+   +  
Sbjct: 179 NALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK 238

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
              DSD  I   LVD Y K  F+
Sbjct: 239 ANADSDDYIGVGLVDMYAKNHFL 261



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 105/445 (23%), Positives = 180/445 (40%), Gaps = 104/445 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L++C    +  +G+Q+H  F+ K   +S   I   L+ MY +     DA+ +FD M
Sbjct: 213 LSSILKACAGAGAFDLGRQIH-GFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM 271

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-------------------------------- 95
             R+   WNA+I G    G  +++  +F                                
Sbjct: 272 SHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATR 331

Query: 96  --NVMPQKNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
             + + +K  F +     N LI  + K   L  A  +F +    + IA  SMI    +  
Sbjct: 332 QVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCD 391

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A++LF E+   L + L+ D F+L++++ ACA L+A E GKQ+H+H++         
Sbjct: 392 HGEGAIKLFMEM---LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI--------- 439

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                              Q ++     D F  +AL+  YA CG + DA   F    +  
Sbjct: 440 -----------------KRQFMS-----DAFAGNALVYTYAKCGSIEDAELAFSSLPERG 477

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W++MI G   +     AL LF +M   G+  +  T+ SVL AC+  G ++  K+   
Sbjct: 478 VVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN 537

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              ++  ID              R     +C                MI +    G+++D
Sbjct: 538 SMKEMFGID--------------RTEEHYSC----------------MIDLLGRAGKLDD 567

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQ 413
           A  +  +MP ++  S    ++G S+
Sbjct: 568 AMELVNSMPFQANASVWGALLGASR 592



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 17/239 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL +C +  +   GKQ+H H +K+  ++      N L+  Y +CG+  DA L F  +
Sbjct: 415 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKCGSIEDAELAFSSL 473

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
           P R   SW+AMI G  + GH +++L+LF  M  +    N  +   ++     AG +  A+
Sbjct: 474 PERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAK 533

Query: 124 TLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M       R    ++ MI    R G   +A+ L   +        Q +A +   +
Sbjct: 534 RYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMP------FQANASVWGAL 587

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           +GA       E GK     + +   +  S     L N Y   G +N   +V  +MK+ +
Sbjct: 588 LGASRVHKDPELGKLAAEKLFILEPE-KSGTHVLLANTYASSGMWNEVAKVRKLMKDSN 645


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 143/521 (27%), Positives = 233/521 (44%), Gaps = 111/521 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFL--KKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           L RLL SC T  S+ V   LH   L   +G+L  +L    +LL  Y   G+   A ++FD
Sbjct: 65  LLRLLPSCGTLLSLRV---LHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFD 121

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND---------------- 103
             PR + +S+ AM+   ++      ++ L + M      P+  D                
Sbjct: 122 GTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAE 181

Query: 104 -------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                              F  N L+  +AKA +L+ AR +F  +P RN ++W SMI   
Sbjct: 182 YSYGRSLHCDAIKVGGADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGC 241

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V+NGFA + + LF ++  D V   +   + +ATVI AC+ L  L  G+ +H  ++  GL 
Sbjct: 242 VQNGFASDGLLLFNKMRQDNVPPSE---YTIATVITACSALFGLHQGRWMHGSVIKQGLM 298

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            +S + ++L+++Y K                               CG+++ AR VFD  
Sbjct: 299 SNSFISAALLDMYVK-------------------------------CGELDHARCVFDEL 327

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
           +    V+W +MI GY  N    +AL LF   R   +  ++ T A+VLSA + L  L  GK
Sbjct: 328 SYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGK 387

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            +HG A K+G+++  +V +AL+D Y+K    S+A ++F  +   D +  N+MI+ Y+   
Sbjct: 388 SIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENN 447

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
             +DA  +F+ M   SL           Q  SP                 D  S+ + +S
Sbjct: 448 MGDDALMLFKQM---SL-----------QGSSP-----------------DAISVVNALS 476

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           A   +  L +G+ +          S+  + T+L++ Y KCG
Sbjct: 477 ASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCG 517



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 210/491 (42%), Gaps = 106/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L++C        G+ LH   +K G  +    + N L+ MY +  +   A  +F+ +
Sbjct: 169 LSLALKACIRSAEYSYGRSLHCDAIKVGGADGF--VMNSLVDMYAKAEDLECARKVFERI 226

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P RN  SW +MI G ++ G     L LFN M Q                           
Sbjct: 227 PDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGR 286

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        N F    L+  + K GEL  AR +F+++   + + W +MI  Y +NG
Sbjct: 287 WMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNG 346

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+RLF +        +  ++   ATV+ A A L  L  GK IH   +  GL   +V
Sbjct: 347 NPLDALRLFLDKR---FANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNV 403

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV++Y K                               C  +++A R+F R ++  
Sbjct: 404 VGNALVDMYAK-------------------------------CQAVSEADRIFGRISNKD 432

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V WNSMISGY  NN   +AL+LF +M   G   DA ++ + LSA   LG L  GK +HG
Sbjct: 433 VVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHG 492

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +A K   + ++ V                           DT LLN    +Y+ CG +  
Sbjct: 493 YAVKHAFVSNIYV---------------------------DTALLN----LYNKCGDLLS 521

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A+ +F  M +++ ++W +MI G    G    ++ LF  M K  +  +  +  S++S C++
Sbjct: 522 ARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSH 581

Query: 449 ISSLELGEQVF 459
              +  G++ F
Sbjct: 582 SGMVTAGKRYF 592


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 234/516 (45%), Gaps = 81/516 (15%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA--------------------------- 44
           LQ+C T   +   KQLH + LKKG+ N    IA                           
Sbjct: 29  LQTCKTLIEL---KQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCS 85

Query: 45  ----NRLLQMYMRCGNPTDALLLFDEM-------PRRNCFSWNAMIEGFMKLGHKEKSLQ 93
               N L++ Y   G   +A+ ++  M       P  + F++  ++    K+    + +Q
Sbjct: 86  LYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVP--DNFTFPFLLSACSKIMAFSEGVQ 143

Query: 94  LFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
           +  V+ +    K+ F  N LI  +A  G++   R +F++M  RN ++W S+I+ Y     
Sbjct: 144 VHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNM 203

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
           A+EAV LF E+    VE    +   +   I ACA L  LE GK++               
Sbjct: 204 AKEAVCLFFEMVEVGVEP---NPVTMVCAISACAKLKDLELGKKV--------------- 245

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                            N +  +  + +   ++AL+  Y  CG M   R +FD  +D + 
Sbjct: 246 ----------------CNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNL 289

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           VM+N+++S Y+ +    E L++  +M + G   D  T+ S ++AC+ LG L  GK  H +
Sbjct: 290 VMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAY 349

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G+     +++A++D Y K G    ACK+F  +     +  N++I      G +E A
Sbjct: 350 VFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELA 409

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             IF  MP  +L+SWN+MI  + Q     EA+DL   M    ++ D+ ++  + SAC  +
Sbjct: 410 LRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYL 469

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +L+L + ++  +    +  D  + T+LVD + +CG
Sbjct: 470 GALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCG 505



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 237/518 (45%), Gaps = 75/518 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C+   +   G Q+H   +K G++   L +AN L+  Y  CG       +FDEM  R
Sbjct: 128 LLSACSKIMAFSEGVQVHGVVVKMGLVKD-LFVANSLIHFYAACGKVDLGRKVFDEMLER 186

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------------------------- 95
           N  SW ++I G+  +   ++++ LF                                   
Sbjct: 187 NVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVC 246

Query: 96  NVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           N+M +     N    N L+  + K G++   R +F++   +N + +N+++  YV++G A 
Sbjct: 247 NLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAG 306

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E + +  E+   L +  + D   + + I ACA L  L  GK  H+++  NGL+    + +
Sbjct: 307 EVLVVLDEM---LQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISN 363

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +++++Y KCG   +A +V + M        ++LI+G    G++  A R+F    +++ V 
Sbjct: 364 AIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVS 423

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI   +  +   EA+ L  +M+  G+  D  T+  + SAC  LG L+  K ++ +  
Sbjct: 424 WNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIE 483

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  +  D+ + +AL+D +S+ G P                 LN M               
Sbjct: 484 KNDIHIDMQLGTALVDMFSRCGDP-----------------LNAM--------------R 512

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  M  + + +W + I   +  G+   A++LF  M K D++ D F   ++++A ++   
Sbjct: 513 VFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGY 572

Query: 452 LELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCGFIK 488
           ++ G Q+F  +  I   S QI+    +VD   + G ++
Sbjct: 573 VDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLE 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 18/215 (8%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           +++K  ++  + +   L+ M+ RCG+P +A+ +F+ M +R+  +W A I      G+ + 
Sbjct: 481 YIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKG 540

Query: 91  SLQLFNVMPQKN----DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMI 141
           +++LF+ M +++    DF +  L++ F+  G +   R LF  M + + ++     +  M+
Sbjct: 541 AIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMV 600

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
               R G   EA  L K +       ++ +  I  + + AC     +E+       I   
Sbjct: 601 DLLGRAGLLEEAFDLMKSM------PIKPNDVIWGSFLAACRKHKNVEFANYADEKI--T 652

Query: 202 GLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKE 235
            L  + V +   L N+Y   G +N   +V   MKE
Sbjct: 653 QLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKE 687



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQV 458
           SL + N++I G + +G   EA+ ++ +M   + +  D F+   ++SAC+ I +   G QV
Sbjct: 85  SLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQV 144

Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
              V  +GL  D  ++ SL+ FY  CG + +
Sbjct: 145 HGVVVKMGLVKDLFVANSLIHFYAACGKVDL 175


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 216/489 (44%), Gaps = 107/489 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L   +++C     +  G+Q+H H LK     S L + N L+ MY + G   D  +LF+ +
Sbjct: 138 LGSAVRACTELGDVGTGRQVHAHALKSE-RGSDLIVQNALVTMYSKNGLVDDGFMLFERI 196

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDF-------------SWNM- 108
             ++  SW ++I GF + G + ++LQ+F  M        N+F             SW   
Sbjct: 197 KDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYG 256

Query: 109 ---------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                L   +A+   L +AR  F  +   + ++WNS+++ Y   
Sbjct: 257 EQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVE 316

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+ LF E+       L+ D   +  ++ AC    AL +G+ IHS+++  GLD   
Sbjct: 317 GLLSEALVLFSEMRDS---GLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLD--- 370

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                        GD +  N +L+M               YA C  ++ A  VF    D 
Sbjct: 371 -------------GDVSVCNSLLSM---------------YARCSDLSSAMDVFHEIKDQ 402

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V WNS+++    +N   E L LF  + ++    D  +L +VLSA + LG+ E  KQVH
Sbjct: 403 DVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVH 462

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +A K G++DD ++++ L+DTY+K                               CG ++
Sbjct: 463 AYAFKAGLVDDRMLSNTLIDTYAK-------------------------------CGSLD 491

Query: 388 DAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           DA  +F  M  N+ + SW+S+IVG +Q G   EA DLF  M  L +R +  +   V++AC
Sbjct: 492 DAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTAC 551

Query: 447 ANISSLELG 455
           + +  +  G
Sbjct: 552 SRVGFVNEG 560



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 227/512 (44%), Gaps = 106/512 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKK------GILNSTLPIANRLLQMYMRC-------- 54
           A L+ +C+   S+  G+++H H +          L     + N L+ MY R         
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRNPVSWASVI 107

Query: 55  ------GNPTDALLLFDEMPRRNC----FSWNAMIEGFMKLG----------HKEKSLQL 94
                 G   DAL LF  M R       F+  + +    +LG          H  KS + 
Sbjct: 108 AAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERG 167

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
            +++ Q      N L++ ++K G +     LF  +  ++ I+W S+I  + + GF  EA+
Sbjct: 168 SDLIVQ------NALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEAL 221

Query: 155 RLFKELNSDLVE-RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
           ++F+E+   +VE     + F   +   AC  + + EYG+QIH   +   LD D  +G SL
Sbjct: 222 QVFREM---IVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSL 278

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
            ++Y +C + +S                               AR  F R      V WN
Sbjct: 279 SDMYARCKNLDS-------------------------------ARVAFYRIEAPDLVSWN 307

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           S+++ Y      +EAL+LF +MR +G+  D  T+  +L AC     L HG+ +H +  K+
Sbjct: 308 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 367

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G+  DV V                                N+++++Y+ C  +  A  +F
Sbjct: 368 GLDGDVSVC-------------------------------NSLLSMYARCSDLSSAMDVF 396

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             + ++ +++WNS++   +Q+  P E L LF  +NK +  +D+ SL +V+SA A +   E
Sbjct: 397 HEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFE 456

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + +QV A     GL  D+++S +L+D Y KCG
Sbjct: 457 MVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCG 488



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 141/335 (42%), Gaps = 49/335 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    +++ G+ +H + +K G L+  + + N LL MY RC + + A+ +F E+  +
Sbjct: 344 LLCACVGRDALYHGRLIHSYLVKLG-LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQ 402

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMPQKNDFSW-------- 106
           +  +WN+++    +  H E+ L+LF                NV+    +  +        
Sbjct: 403 DVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVH 462

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPR-RNAIAWNSMIHCYVRNGFA 150
                          N LI  +AK G L  A  LF  M   R+  +W+S+I  Y + G+A
Sbjct: 463 AYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYA 522

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVL 209
           +EA  LF  + S L  R     FI   V+ AC+ +  +  G   +S +    G+      
Sbjct: 523 KEAFDLFSRMRS-LGIRPNHVTFI--GVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREH 579

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTD-- 266
            S +V+L  + G    A   ++ M  EPD      L++       M   +R  +   +  
Sbjct: 580 CSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNID 639

Query: 267 -TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + S  +  + + Y ++    E   L   MR +GV
Sbjct: 640 PSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGV 674


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 234/534 (43%), Gaps = 119/534 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 17  LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 75

Query: 72  CFSWNAMIEGFMKLGHKEKS--------LQLFNVMP------------------------ 99
             +WNAM+ G+   G    +        +Q+  + P                        
Sbjct: 76  LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 135

Query: 100 ---------QKNDFSWNMLISG----------FAKAGELKTARTLFNDMPRRNAIAWNSM 140
                      N  S + L  G          +AK G L  AR +F+ MP RN + W+++
Sbjct: 136 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 195

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  +V      +A  LFK + +  +  L   +  +A+ + ACA L  L  G+Q+H+ +  
Sbjct: 196 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAK 253

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G+  D   G+SL+++Y K                                G ++ A  +
Sbjct: 254 SGVHADLTAGNSLLSMYAKA-------------------------------GLIDQAIAL 282

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD      +V +++++SGY+ N    EA L+F KM+   V  DA+T+ S++ ACS L  L
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           +HG+  HG          VI+          RG+ S+            T + N +I +Y
Sbjct: 343 QHGRCSHG---------SVII----------RGLASE------------TSICNALIDMY 371

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           + CGRI+ ++ +F  MP++ ++SWN+MI G   +G   EA  LF  MN L    D  +  
Sbjct: 372 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 431

Query: 441 SVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
            ++SAC++   +  G+  F  +    GL         +VD   + GF  +DE Y
Sbjct: 432 CLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF--LDEAY 483



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 192/463 (41%), Gaps = 118/463 (25%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH +   K  L   + +   LL MY +CG+   A  +FD MP RN  +W+A+I GF+   
Sbjct: 144 LHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCS 203

Query: 87  HKEKSLQLFNVMPQKN---------------------------------------DFS-W 106
              ++  LF  M  +                                        D +  
Sbjct: 204 RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 263

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+S +AKAG +  A  LF++M  ++ +++++++  YV+NG A EA  +FK++ +  VE
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               DA  + ++I AC+ LAAL++G+  H  +++ GL  ++ + ++L+++Y KCG  + +
Sbjct: 324 P---DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLS 380

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            QV NMM   D                                V WN+MI+GY  +    
Sbjct: 381 RQVFNMMPSRD-------------------------------IVSWNTMIAGYGIHGLGK 409

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK---QVHGHA-----------CK 332
           EA  LF +M   G   D  T   +LSACS  G +  GK    V GH            C 
Sbjct: 410 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 333 V------GVID-------------DVIVASALLD---TYSKRGMPSDACKLFSELKVYDT 370
           V      G +D             DV V  ALL     Y    +     ++  EL    T
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 529

Query: 371 ILLNTMITVYSSCGRIEDAKHI--------FRTMPNKSLISWN 405
                +  +YS+ GR ++A  +        F+  P  S I  N
Sbjct: 530 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 142/335 (42%), Gaps = 71/335 (21%)

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           L  R+  + +     + AC+ LA    G+ IH H +  GL  D  + ++L+++Y KC   
Sbjct: 2   LRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACL 61

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A  +   M   D    +A+++GYA+ G                  M++  ++  +S  
Sbjct: 62  PDAAHIFATMPARDLVAWNAMLAGYAHHG------------------MYHHAVAHLLSMQ 103

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH---AC-------KV 333
                 +  H++R N     ASTL ++L   +  G L  G  VH +   AC       K 
Sbjct: 104 ------MQMHRLRPN-----ASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKS 152

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            + D V++ +ALLD Y+K                               CG +  A+ +F
Sbjct: 153 KLTDGVLLGTALLDMYAK-------------------------------CGSLLYARRVF 181

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSL 452
             MP ++ ++W+++I G        +A  LF  M    L  +   S+AS + ACA++  L
Sbjct: 182 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHL 241

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            +GEQ+ A +   G+ +D     SL+  Y K G I
Sbjct: 242 RMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 40/194 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 286

Query: 68  PRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFS---------------- 105
             ++  S++A++ G+++ G  E      K +Q  NV P                      
Sbjct: 287 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 346

Query: 106 -----------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LI  +AK G +  +R +FN MP R+ ++WN+MI  Y  +G
Sbjct: 347 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406

Query: 149 FAREAVRLFKELNS 162
             +EA  LF E+N+
Sbjct: 407 LGKEATALFLEMNN 420



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 43/203 (21%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M R+ V  +  T    L ACS+L     G+ +H HA   G+  D+ V++ALLD Y K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             DA  +F+ +   D                               L++WN+M+ G + +
Sbjct: 61  LPDAAHIFATMPARD-------------------------------LVAWNAMLAGYAHH 89

Query: 415 GSPIEALD--LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA----------RV 462
           G    A+   L   M    LR +  +L +++   A   +L  G  V A          R 
Sbjct: 90  GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 149

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
           +   L    ++ T+L+D Y KCG
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCG 172


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 187/383 (48%), Gaps = 44/383 (11%)

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           MP R+  SWN++I G+ K G  ++S +LF +MP KN  SWN +I+G  +   +  A   F
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
             MP+RN  +WN+MI   VR     EA RLF+E+        + +      ++   A + 
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMP-------RRNVISYTAMVDGYAKIG 113

Query: 187 ALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            +E  +      L N +   +V+  + +++ Y + G F+ A  +   M + +   ++A+I
Sbjct: 114 EIEQAR-----ALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMI 168

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
           +GY   GK + A+ +FD+        WN+MI+GY  N    EAL L  +M + G+  D S
Sbjct: 169 TGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHS 228

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
           TL SVL+ACSSL  L+ G++ H    K G              Y  R             
Sbjct: 229 TLISVLTACSSLASLQEGRKTHVLVLKSG--------------YESR------------- 261

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                 + N +IT+Y  CG I D++  FR + +  ++SWN+MI   +++G    AL  F 
Sbjct: 262 ----ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFG 317

Query: 426 NMNKLDLRMDKFSLASVISACAN 448
            M    +  D  +  S++SAC +
Sbjct: 318 EMRSNRVEPDGITFLSLLSACGH 340



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 170/385 (44%), Gaps = 97/385 (25%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++   +R     +A  LF+EMPRRN  S+ AM++G+ K+G  E++  LFN MPQKN  
Sbjct: 72  NAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV 131

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIA---------------------------- 136
           SW ++ISG+ + G+   A  LF  MP +N +A                            
Sbjct: 132 SWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRD 191

Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
              WN+MI  Y +NG   EA++L  ++   L   +Q D   L +V+ AC+ LA+L+ G++
Sbjct: 192 LASWNAMITGYAQNGSGEEALKLHSQM---LKMGMQPDHSTLISVLTACSSLASLQEGRK 248

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
            H  +L +G +    + ++L+ +Y KCG    +      +  PD    +A+I+ +A  G 
Sbjct: 249 THVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG- 307

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                  +DR                        AL  F +MR N V  D  T  S+LSA
Sbjct: 308 ------FYDR------------------------ALASFGEMRSNRVEPDGITFLSLLSA 337

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKLFSELKVYDTIL 372
           C             GHA KV   + +   ++++++Y     P   AC             
Sbjct: 338 C-------------GHAGKVH--ESLNWFNSMIESYKIVPRPEHFAC------------- 369

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMP 397
              ++ + S  G++E A  I + MP
Sbjct: 370 ---LVDILSRGGQVEKAYKIIQEMP 391



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 148/282 (52%), Gaps = 8/282 (2%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+V  +S++  Y K G F+ + ++  +M   +    +++I+G     ++++A + F    
Sbjct: 5   DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMP 64

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             ++  WN+MISG +  +   EA  LF +M R  V+    +  +++   + +G +E  + 
Sbjct: 65  QRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVI----SYTAMVDGYAKIGEIEQARA 120

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +     +  V+   ++ S     Y + G   +A  LF ++   + + +  MIT Y   G+
Sbjct: 121 LFNCMPQKNVVSWTVMISG----YVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGK 176

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            + AK +F  +P + L SWN+MI G +QNGS  EAL L   M K+ ++ D  +L SV++A
Sbjct: 177 TDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTA 236

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           C++++SL+ G +    V   G +S   I  +L+  YCKCG I
Sbjct: 237 CSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSI 278



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 21/239 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C++  S+  G++ H+  LK G   S + I N L+ MY +CG+  D+ L F ++
Sbjct: 230 LISVLTACSSLASLQEGRKTHVLVLKSG-YESRISICNALITMYCKCGSILDSELAFRQI 288

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SWNAMI  F + G  +++L  F  M     + +  ++  L+S    AG++  + 
Sbjct: 289 DHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESL 348

Query: 124 TLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             FN M       PR    A   ++    R G   +A ++ +E+        + D  I  
Sbjct: 349 NWFNSMIESYKIVPRPEHFA--CLVDILSRGGQVEKAYKIIQEMP------FEADCGIWG 400

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            ++ AC     ++ G ++ +  +V     +S     L N+Y   G +    +V  +M+E
Sbjct: 401 ALLAACHVHLNVKLG-ELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMRE 458


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 218/498 (43%), Gaps = 101/498 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA LL++C     + +G Q+H   +K G L   +   + L+ MY +C +  DAL  F  M
Sbjct: 166 LAVLLKACGGLDDLALGVQIHALAVKTG-LEMDVRAGSALVDMYGKCRSLEDALHFFHGM 224

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF---------------NVMPQKNDFSWNMLISG 112
             RN  SW A+I G ++     + L+L                +    KN FS + ++  
Sbjct: 225 GERNSVSWGAVIAGCVQNEQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGT 284

Query: 113 -----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
                +AKA  L  AR  F  +P       N+M+   VR G   EA++LF+ +       
Sbjct: 285 AIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRS---G 341

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           +      L+ V  ACA+               V G D D  + +++++LYGKC       
Sbjct: 342 IGFGVVSLSGVFSACAE---------------VKGFDVDVCVRNAILDLYGKC------- 379

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                          AL+  Y           VF       SV WN++I+    N    +
Sbjct: 380 --------------KALVEAYL----------VFQEMEQRDSVSWNTIIAALEQNECYED 415

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
            ++  ++M R+G+  D  T  SVL AC+ L  LE+G  VHG A K G+  D  V+S ++D
Sbjct: 416 TIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVD 475

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y K                               CG I +A  +   +  + L+SWNS+
Sbjct: 476 MYCK-------------------------------CGMITEALKLHDRIGGQELVSWNSI 504

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G S N    EA   F  M  + ++ D F+ A+V+ +CAN++++ELG+Q+  ++    +
Sbjct: 505 IAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEM 564

Query: 468 DSDQIISTSLVDFYCKCG 485
             D+ IS++LVD Y KCG
Sbjct: 565 LGDEFISSTLVDMYAKCG 582



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 205/521 (39%), Gaps = 132/521 (25%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA 77
           H ++  G+  H   L  G +  T+ ++N LLQMY RCG    A  +FD            
Sbjct: 44  HSALATGQAAHARMLVSGFV-PTMFVSNCLLQMYARCGGAAHAHGVFD------------ 90

Query: 78  MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAW 137
                               MP ++  SWN +++ +A  G+   A +L   MP  + ++W
Sbjct: 91  -------------------TMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSW 131

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           N+++  Y + G  R+ V L  E+    V     D   LA ++ AC  L  L  G QIH+ 
Sbjct: 132 NALLSGYCQRGMFRDLVGLSIEMARCGVAP---DRTTLAVLLKACGGLDDLALGVQIHAL 188

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG---------- 247
            +  GL+ D   GS+LV++YGKC     A    + M E +     A+I+G          
Sbjct: 189 AVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRG 248

Query: 248 -----------------------------------------YANCGKMNDARRVFDRTTD 266
                                                    YA    + DARR F    +
Sbjct: 249 LELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAFFGLPN 308

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            +    N+M+ G +      EA+ LF  M R+G+     +L+ V SAC+ +         
Sbjct: 309 HTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVK-------- 360

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
                  G   DV V +A+LD Y K       CK   E                      
Sbjct: 361 -------GFDVDVCVRNAILDLYGK-------CKALVE---------------------- 384

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             A  +F+ M  +  +SWN++I  L QN    + +     M +  +  D F+  SV+ AC
Sbjct: 385 --AYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKAC 442

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           A + SLE G  V  +    GL  D  +S+++VD YCKCG I
Sbjct: 443 AGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMI 483



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 210/478 (43%), Gaps = 90/478 (18%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
            LL  C     +   +QLH H +K    +S   +   ++ +Y +  +  DA   F  +P 
Sbjct: 250 ELLCRCKAITCLSTARQLHAHAIKNK-FSSDRVVGTAIVDVYAKADSLVDARRAFFGLPN 308

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----------DFSWNMLISGF------ 113
               + NAM+ G ++ G   +++QLF  M +             FS    + GF      
Sbjct: 309 HTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCV 368

Query: 114 --------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
                    K   L  A  +F +M +R++++WN++I    +N    + +     LN  L 
Sbjct: 369 RNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTI---VHLNEMLR 425

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             ++ D F   +V+ ACA L +LEYG  +H   + +GL  D+ + S++V++Y K      
Sbjct: 426 SGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCK------ 479

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG + +A ++ DR      V WNS+I+G+  N + 
Sbjct: 480 -------------------------CGMITEALKLHDRIGGQELVSWNSIIAGFSLNKQS 514

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA   F +M   GV  D  T A+VL +C++L  +E GKQ+HG   K  ++ D  ++S L
Sbjct: 515 EEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTL 574

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K G   D+  +F +++  D                                +SWN
Sbjct: 575 VDMYAKCGNMPDSQLMFEKVQKLD-------------------------------FVSWN 603

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           +MI G + +G   EAL++F    K ++  +  +  +V+ AC+++  L+ G + F  +T
Sbjct: 604 AMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMT 661



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 128/303 (42%), Gaps = 50/303 (16%)

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           A A  +AL  G+  H+ +LV+G      + + L+ +Y +CG    A+ V + M   D   
Sbjct: 40  ASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVS 99

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + +++ YA+ G    A  +     D   V WN+++SGY       + + L  +M R GV
Sbjct: 100 WNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGV 159

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D +TLA +L AC  L  L  G Q+H  A K G+  DV   SAL+D Y K         
Sbjct: 160 APDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGK--------- 210

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 C  +EDA H F  M  ++ +SW ++I G  QN   +  
Sbjct: 211 ----------------------CRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRG 248

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           L+L C                    C  I+ L    Q+ A        SD+++ T++VD 
Sbjct: 249 LELLCR-------------------CKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDV 289

Query: 481 YCK 483
           Y K
Sbjct: 290 YAK 292



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 2/182 (1%)

Query: 305 STLASVLSACSSLGF--LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           +T + V   C+S G   L  G+  H      G +  + V++ LL  Y++ G  + A  +F
Sbjct: 30  ATFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVF 89

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   DT+  NTM+T Y+  G    A  +   MP+  ++SWN+++ G  Q G   + + 
Sbjct: 90  DTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVG 149

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           L   M +  +  D+ +LA ++ AC  +  L LG Q+ A     GL+ D    ++LVD Y 
Sbjct: 150 LSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYG 209

Query: 483 KC 484
           KC
Sbjct: 210 KC 211



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 1   MDTRIDYL--ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           M  + D+   A +L SC    +I +GKQ+H   +K+ +L     I++ L+ MY +CGN  
Sbjct: 527 MGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEF-ISSTLVDMYAKCGNMP 585

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISG 112
           D+ L+F+++ + +  SWNAMI G+   G   ++L++F      NV P  N  ++  ++  
Sbjct: 586 DSQLMFEKVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAP--NHATFVAVLRA 643

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
            +  G L      F+ M  R  +     +  +   G  +EA++  + +       L+ DA
Sbjct: 644 CSHVGLLDDGCRYFHLMTSRYKL--EPQLEHFACMG-PQEALKFIRSMP------LEADA 694

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
            I  T++  C     +E  +   S++L    D DS +   L N+Y + G +   ++   +
Sbjct: 695 VIWKTLLSICKIRQDVEVAETAASNVLRLDPD-DSSVYILLSNVYAESGKWVDVSRTRRL 753

Query: 233 MKE 235
           M++
Sbjct: 754 MRQ 756


>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
          Length = 705

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/522 (27%), Positives = 227/522 (43%), Gaps = 113/522 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           LQSC         ++LH   L  G  + T+ +A +L++ Y + G+   AL +FD MPRRN
Sbjct: 63  LQSCPDFQE---ARRLHAAVLVGGHGHGTVLVA-QLVRAYAKLGDVAHALRVFDGMPRRN 118

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------------------------W 106
            F+WNA+I+G +  G   ++L++F  M      +                         W
Sbjct: 119 SFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVW 178

Query: 107 NM-------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
            M                   L+  FAK G L  AR +F  M  R+  AW +MI   V +
Sbjct: 179 EMVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHS 238

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   E V LF  + S   E    D+ I ATVI AC     L+ G  +H   + +G   D 
Sbjct: 239 GNWLEVVDLFNHMRS---EGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDI 295

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++LV++Y KCG                             C +M D   +F  T   
Sbjct: 296 YVSNALVDMYCKCG-----------------------------CVEMADC--LFWSTNSK 324

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W+S+I GY  N     ++ LF +M   G+  ++STLAS+L   S L  +  GK++H
Sbjct: 325 DVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIH 384

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             + + G+     V SAL+D YSK+G+          ++V +TI   T+           
Sbjct: 385 CFSIRHGLERSEFVVSALIDLYSKQGL----------IRVAETIFWLTL----------- 423

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                     +K L  WNSM+ G + NG    A      + K+ L+ D  ++ SV+  C 
Sbjct: 424 ----------DKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCN 473

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
               L  G+++ A V    ++S   ++ +L+D YCKCGF+++
Sbjct: 474 QHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEV 515



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 183/383 (47%), Gaps = 60/383 (15%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  +AK G++  A  +F+ MPRRN+ AWN++I   V  G   EA+ +F  + +D    +
Sbjct: 94  LVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVND--GSV 151

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D F    VI ACA L A+  G+++   +     + D   G++  N++ +C        
Sbjct: 152 AVDGFTYPPVIKACAALGAVAQGRKVWEMV-----ETDIASGNARPNVFVQC-------- 198

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                         AL+  +A CG +++AR VF+         W +MI G + +    E 
Sbjct: 199 --------------ALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEV 244

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           + LF+ MR  G   D+   A+V+SAC   G L+ G  +HG A K G   D+ V++AL+D 
Sbjct: 245 VDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDM 304

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K                               CG +E A  +F +  +K ++SW+S+I
Sbjct: 305 YCK-------------------------------CGCVEMADCLFWSTNSKDVVSWSSLI 333

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           VG SQNG    ++ LFC M  L +  +  +LAS++   + +  +  G+++       GL+
Sbjct: 334 VGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLE 393

Query: 469 SDQIISTSLVDFYCKCGFIKMDE 491
             + + ++L+D Y K G I++ E
Sbjct: 394 RSEFVVSALIDLYSKQGLIRVAE 416



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 202/487 (41%), Gaps = 107/487 (21%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----- 101
           L+ M+ +CG   +A  +F+ M  R+  +W AMI G +  G+  + + LFN M  +     
Sbjct: 200 LVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVD 259

Query: 102 ----------------------------------NDFSWNMLISGFAKAGELKTARTLFN 127
                                             + +  N L+  + K G ++ A  LF 
Sbjct: 260 SLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFW 319

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
               ++ ++W+S+I  Y +NG    +V LF E+ S     +  ++  LA+++   + L  
Sbjct: 320 STNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMIS---LGINPNSSTLASILPCLSVLKL 376

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           +  GK+IH   + +GL                               E  +F +SALI  
Sbjct: 377 IRSGKEIHCFSIRHGL-------------------------------ERSEFVVSALIDL 405

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+  G +  A  +F  T D    +WNSM++GY  N     A      +++ G+  D  T+
Sbjct: 406 YSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTV 465

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SVL  C+    L  GK++H +  K  +     V +ALLD Y K                
Sbjct: 466 VSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCK---------------- 509

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                          CG +E AK +F+ M  ++ +++N +I    ++    +AL  F  M
Sbjct: 510 ---------------CGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLM 554

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGF 486
            +  +  DK +  +++S C++   ++ G  ++ + +    +  ++   + +VD Y +CG 
Sbjct: 555 KRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCG- 613

Query: 487 IKMDEYY 493
            K+DE +
Sbjct: 614 -KLDEAW 619



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 185/438 (42%), Gaps = 86/438 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A ++ +C     + VG  LH   +K G  +  + ++N L+ MY +CG    A  LF    
Sbjct: 264 ATVISACGRAGELQVGTALHGCAVKSGA-SGDIYVSNALVDMYCKCGCVEMADCLFWSTN 322

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP------------- 99
            ++  SW+++I G+ + G    S+ LF                +++P             
Sbjct: 323 SKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKE 382

Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                     ++++F  + LI  ++K G ++ A T+F     ++   WNSM+  Y  NG+
Sbjct: 383 IHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGY 442

Query: 150 AREA---VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +  A   +RL +++       L+ D   + +V+  C     L  GK++H++++       
Sbjct: 443 SDSAFCALRLLQKVG------LKPDHVTVVSVLPLCNQHHMLIQGKELHAYVI------- 489

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                        C   NS   V N           AL+  Y  CG +  A+ VF   T+
Sbjct: 490 -----------KYC--INSVCSVNN-----------ALLDMYCKCGFLEVAKEVFQLMTE 525

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            ++V +N +IS +  +N + +AL  F  M+R+G+  D  T  ++LS CS  G ++ G  +
Sbjct: 526 RNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHL 585

Query: 327 -HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI-LLNTMITVYSSCG 384
            H       +  +    S ++D YS+ G   +A    S +     I +L  ++       
Sbjct: 586 YHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHN 645

Query: 385 RIEDA----KHIFRTMPN 398
           R++ A    K IF   PN
Sbjct: 646 RMDIAELVGKRIFEQNPN 663



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 43/247 (17%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  CN HH +  GK+LH + +K  I NS   + N LL MY +CG    A  +F  M  R
Sbjct: 468 VLPLCNQHHMLIQGKELHAYVIKYCI-NSVCSVNNALLDMYCKCGFLEVAKEVFQLMTER 526

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLF 126
           N  ++N +I  F K  H++++L  F++M +     +  ++  L+S  + AG +     L+
Sbjct: 527 NTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLY 586

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M     I+     ++ ++  Y R G   EA        S++ E  + D  +L  ++ A
Sbjct: 587 HSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFM----SNMAEEPEID--VLGGLLAA 640

Query: 182 C-----ADLAALEYGKQIHS--------HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
           C      D+A L  GK+I          HIL             L N+Y   G ++   +
Sbjct: 641 CRVHNRMDIAEL-VGKRIFEQNPNDPGYHIL-------------LSNIYADAGMWSDVTR 686

Query: 229 VLNMMKE 235
           +  M++E
Sbjct: 687 IRTMIQE 693


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/510 (26%), Positives = 233/510 (45%), Gaps = 69/510 (13%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR  Y   LL++C    ++  GK +H   + KG   S   I   L+  Y +CG+  +A+ 
Sbjct: 48  TRFTY-PSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVK 106

Query: 63  LFDEMPR-----RNCFSWNAMIEGFMKLGHKEKS------LQLFNVMPQKNDFSWNMLIS 111
           +FD++P      ++   WN+++ G+ + GHK++       +QLF V P  + +S  +L+ 
Sbjct: 107 VFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRP--DAYSLCILLG 164

Query: 112 ------GFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
                 G+AK     + R +F   P   +     +I+ Y   G   +A RLFKEL     
Sbjct: 165 ASDGHLGYAKQIHGYSVRKVFYGDPFLES----GLIYMYFSCGRPLDAWRLFKELED--- 217

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-GDFN 224
              + +      +IG   +    E    +  ++L    +   V  S    L   C G+F 
Sbjct: 218 ---KGNVVAWNVMIGGFGENGLWE--NSLEVYLLAKNENVKLVSASFTSTLSACCQGEFV 272

Query: 225 SAN-----QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
           S        ++ +  E D +  ++L++ Y+ C  + DA  VFD+ +   + +WN+MIS Y
Sbjct: 273 SFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAY 332

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
           + N    + L ++ +M+   +  D+ T  +VLS+C  +G  + G+ +H    K  +  +V
Sbjct: 333 VGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNV 392

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            + SALL  YSK G   DA  +F+ +K                                +
Sbjct: 393 ALQSALLTMYSKCGNSDDANSIFNTIK-------------------------------GR 421

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            +++W SMI G  QN   +EAL+ + +M     + D   +ASV+SAC  + ++ LG  + 
Sbjct: 422 DVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIH 481

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
                 GL+ D  +++SLVD Y K  F KM
Sbjct: 482 GLAIKSGLEQDVFVASSLVDMYSKFNFPKM 511



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 134/513 (26%), Positives = 233/513 (45%), Gaps = 108/513 (21%)

Query: 22  HVG--KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR-NCFSWNAM 78
           H+G  KQ+H + ++K        + + L+ MY  CG P DA  LF E+  + N  +WN M
Sbjct: 169 HLGYAKQIHGYSVRKVFYGDPF-LESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVM 227

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKN------------------DF-SWNM----------- 108
           I GF + G  E SL+++ +   +N                  +F S+ M           
Sbjct: 228 IGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGF 287

Query: 109 ---------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
                    L++ ++K   ++ A  +F+ +  +    WN+MI  YV NG + + ++++K+
Sbjct: 288 ENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQ 347

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +    V ++  D+     V+ +C  + + ++G+ IH+ ++   +  +  L S+L+ +Y K
Sbjct: 348 MK---VLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSK 404

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                          CG  +DA  +F+       V W SMISG+
Sbjct: 405 -------------------------------CGNSDDANSIFNTIKGRDVVAWGSMISGF 433

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             N +  EAL  ++ M   G   D+  +ASV+SAC+ L  +  G  +HG A K G+  DV
Sbjct: 434 CQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDV 493

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            VAS+L+D YSK   P  +  +FS+                               MP K
Sbjct: 494 FVASSLVDMYSKFNFPKMSGNVFSD-------------------------------MPLK 522

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +L++WNS+I    +NG P  ++ LF  M +  L  D  S+ SV+ + ++++ L  G+ V 
Sbjct: 523 NLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVH 582

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
             +    + SD  +  +L+D Y KCGF+K  ++
Sbjct: 583 GYLIRQRIPSDLQLENALIDMYIKCGFLKYAQH 615



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 222/522 (42%), Gaps = 108/522 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     +  G Q+H   +K G  N    +   LL MY +C    DA  +FD++  + 
Sbjct: 263 LSACCQGEFVSFGMQVHCDLVKLGFENDPY-VCTSLLTMYSKCKLVEDAENVFDQVSVKK 321

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP-------------------------------- 99
              WNAMI  ++  G     L+++  M                                 
Sbjct: 322 TELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHA 381

Query: 100 -------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                  Q N    + L++ ++K G    A ++FN +  R+ +AW SMI  + +N    E
Sbjct: 382 ELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYME 441

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+  +   NS  V   + D+ I+A+V+ AC  L  +  G  IH   + +GL+ D  + SS
Sbjct: 442 ALEFY---NSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASS 498

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++Y K                              N  KM+    VF      + V W
Sbjct: 499 LVDMYSK-----------------------------FNFPKMSG--NVFSDMPLKNLVAW 527

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           NS+IS Y  N     ++ LF +M + G+  D+ ++ SVL + SS+  L  GK VHG+  +
Sbjct: 528 NSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIR 587

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
             +  D+ + +AL+D Y K                               CG ++ A+HI
Sbjct: 588 QRIPSDLQLENALIDMYIK-------------------------------CGFLKYAQHI 616

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F+ M   +L++WN MI G   +G  ++A+ LF  M    +  D  +  S++++C +   +
Sbjct: 617 FQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFI 676

Query: 453 ELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIKMDEYY 493
           E G ++F  +T+  G++       ++VD   + G  ++D+ Y
Sbjct: 677 EEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAG--RLDDAY 716



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 144/325 (44%), Gaps = 59/325 (18%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSA 226
           L    F   +++ AC  L+ L+YGK IHS I+  G  + D  + +SL+N Y KCG F +A
Sbjct: 45  LNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNA 104

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +V + + E +       +SG                        WNS+++GY       
Sbjct: 105 VKVFDKLPESE-------VSG-------------------QDVTFWNSIVNGYFRFGHKK 138

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           E +  F +M+  GV  DA +L  +L A  S G L + KQ+HG++ +     D  + S L+
Sbjct: 139 EGIAQFCRMQLFGVRPDAYSLCILLGA--SDGHLGYAKQIHGYSVRKVFYGDPFLESGLI 196

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
             Y   G P DA +LF EL                     ED  ++         ++WN 
Sbjct: 197 YMYFSCGRPLDAWRLFKEL---------------------EDKGNV---------VAWNV 226

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           MI G  +NG    +L+++      ++++   S  S +SAC     +  G QV   +  +G
Sbjct: 227 MIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLG 286

Query: 467 LDSDQIISTSLVDFYCKCGFIKMDE 491
            ++D  + TSL+  Y KC  ++  E
Sbjct: 287 FENDPYVCTSLLTMYSKCKLVEDAE 311



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 119/273 (43%), Gaps = 45/273 (16%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D +A ++ +C    ++++G  +H   +K G L   + +A+ L+ MY +   P  +  +F 
Sbjct: 459 DIMASVVSACTGLKNVNLGCTIHGLAIKSG-LEQDVFVASSLVDMYSKFNFPKMSGNVFS 517

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------------------- 105
           +MP +N  +WN++I  + + G  + S+ LF+ M Q   F                     
Sbjct: 518 DMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRK 577

Query: 106 -------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               N LI  + K G LK A+ +F +M + N + WN MI     
Sbjct: 578 GKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGS 637

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-NGLDF 205
           +G   +A+ LF E+ S  +     D     +++ +C     +E G ++   + V +G++ 
Sbjct: 638 HGDWLKAMSLFDEMRSFGIAP---DDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEP 694

Query: 206 DSVLGSSLVNLYGKCGDFNSANQ-VLNMMKEPD 237
                 ++V+L G+ G  + A   V N+  EPD
Sbjct: 695 RMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPD 727



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 23/224 (10%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK +H + +++ I  S L + N L+ MY++CG    A  +F  M + N  +WN MI G  
Sbjct: 578 GKAVHGYLIRQRI-PSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCG 636

Query: 84  KLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA--- 136
             G   K++ LF+ M       +D ++  L++     G ++    LF  M   + I    
Sbjct: 637 SHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRM 696

Query: 137 --WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
             + +++    R G   +A    K L       ++ D  I  +++ +C     +E GK +
Sbjct: 697 EHYVNIVDLLGRAGRLDDAYAFVKNL------PIEPDRSIWLSLLCSCRVHHNVELGK-L 749

Query: 195 HSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
            +H L   LD +   GS+   L+NLYG+    + A  +   MKE
Sbjct: 750 AAHKL---LDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKE 790


>gi|357521583|ref|XP_003631080.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525102|gb|AET05556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 226/490 (46%), Gaps = 98/490 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLH-LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +RLLQ+   ++++  GK LH   F  +   ++ +      +  +MR G+   AL +FD M
Sbjct: 16  SRLLQTMRANYNLR-GKHLHNFCFPVQKARDTYIVKCTNSISTHMRNGHCHLALRVFDSM 74

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
           P +N FSWN M+ G++K      +  LF++MPQK+  SWN+++SG+ ++G +  A+ +F+
Sbjct: 75  PYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCVDEAKLVFD 134

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +MP +++I+WN ++  YV+NG   EA RLF+        ++  +      ++G       
Sbjct: 135 NMPYKDSISWNGLLAVYVQNGRLEEARRLFES-------KVDWELISWNCLMGGYVKRKM 187

Query: 188 LEYGKQIHSHILV-NGLDFDSVLG--------------------------SSLVNLYGKC 220
           L   +++  H+ V N + +++++                           +++V  Y + 
Sbjct: 188 LGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQS 247

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G  + A +V + M    +   + +I+GY    KM+ AR +F+     +   WN++ISGY 
Sbjct: 248 GMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMARELFEAMPCRNVGSWNTIISGYG 307

Query: 281 SNNEDTEALLLFH-------------------------------KMRRNGVLEDASTLAS 309
            N +  +A  LF                                KM+R+G   + ST   
Sbjct: 308 QNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRSTFCC 367

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
            LS C+ +  L  GKQVHG A K G  +  +V +ALL+ Y K                  
Sbjct: 368 ALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCK------------------ 409

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        CG I +A  +F  M  K +ISWN+M+ G +++G   +AL +F +M  
Sbjct: 410 -------------CGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKT 456

Query: 430 LDLRMDKFSL 439
              + D+ ++
Sbjct: 457 AGFKPDEITM 466



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 193/410 (47%), Gaps = 52/410 (12%)

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
           I   M+ GH   +L++F+ MP KN FSWN++++G+ K   L  AR LF+ MP+++A++WN
Sbjct: 55  ISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWN 114

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
            M+  YVR+G                                 C D A L +    +   
Sbjct: 115 VMLSGYVRSG---------------------------------CVDEAKLVFDNMPYK-- 139

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
                  DS+  + L+ +Y + G    A ++     + +    + L+ GY     + DAR
Sbjct: 140 -------DSISWNGLLAVYVQNGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDAR 192

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           R+FD     +++ WN+MISGY  + +  +A  LF +      + D  T  +++ A    G
Sbjct: 193 RLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEE----SPVRDVFTWTAMVFAYVQSG 248

Query: 319 FLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
            L+  ++V      K  +  +V++A  +   Y K  M   A +LF  +   +    NT+I
Sbjct: 249 MLDEARRVFDEMPGKREMAYNVMIAGYV--QYKKMDM---ARELFEAMPCRNVGSWNTII 303

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           + Y   G I  A+ +F  M  +  +SW ++I G +Q G   + + +   M +    +++ 
Sbjct: 304 SGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRS 363

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +    +S CA +++L LG+QV  +    G D+  ++  +L++ YCKCG I
Sbjct: 364 TFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSI 413


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 202/450 (44%), Gaps = 97/450 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    S H GKQ+H H LK G ++    I   L+ MY + G   +A L+FD+   R
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVF-IHTSLINMYAQSGEMNNAQLVFDQSNFR 193

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A+I G+   G+ +++ QLF+ MP K+  SWN +I+G+A+ G  K A  LF DM 
Sbjct: 194 DAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR 253

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           + N     S I                                   +V+ ACA   AL+ 
Sbjct: 254 KANVPPNESTI----------------------------------VSVLSACAQSNALDL 279

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G  + S I   GL  +  L ++L+++Y KCGD  +A ++ + M E D             
Sbjct: 280 GNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERD------------- 326

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                              + WN MI GY       EAL LF +M  +GV     T  S+
Sbjct: 327 ------------------VISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSI 368

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L +C+ LG ++ GK +H +  K        ++++L+D Y+K                   
Sbjct: 369 LPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAK------------------- 409

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG I  A+ +F  M  KSL SWN+MI GL+ +G   +A +LF  M+  
Sbjct: 410 ------------CGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSD 457

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFA 460
            +  ++ +   ++SAC +   ++LG+Q F+
Sbjct: 458 GIEPNEITFVGILSACKHAGLVDLGQQFFS 487



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/377 (30%), Positives = 185/377 (49%), Gaps = 34/377 (9%)

Query: 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
           S  +++G++  A +LFN +   N   WNSMI     +     A+  F  +   +   ++ 
Sbjct: 71  SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM---IYSGVEP 127

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +++    ++ +CA LA+   GKQIH+H+L  G   D  + +SL+N+Y + G+ N+A  V 
Sbjct: 128 NSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVF 187

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           +     D    +ALI+GYA  G M+ AR++FD       V WN+MI+GY       EALL
Sbjct: 188 DQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALL 247

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF  MR+  V  + ST+ SVLSAC+    L+ G  +       G+  ++ + +AL+D YS
Sbjct: 248 LFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYS 307

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G    A +LF ++   D I  N MI  Y+     ++A  +FR M              
Sbjct: 308 KCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREM-------------- 353

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           L+    P E                  +  S++ +CA++ +++LG+ + A +        
Sbjct: 354 LASGVEPTE-----------------ITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS 396

Query: 471 QIISTSLVDFYCKCGFI 487
             +STSL+D Y KCG I
Sbjct: 397 TSLSTSLIDLYAKCGNI 413



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 151/296 (51%), Gaps = 33/296 (11%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNL--YGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
           KQIH+HI+  GL       S L+      + GD + A  + N ++EP+ F          
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLF---------- 95

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
                                +WNSMI G   +     AL+ F +M  +GV  ++ T   
Sbjct: 96  ---------------------IWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L +C+ L     GKQ+H H  K+G + DV + ++L++ Y++ G  ++A  +F +    D
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            I    +I  Y+  G ++ A+ +F  MP K ++SWN+MI G +Q G   EAL LF +M K
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++  ++ ++ SV+SACA  ++L+LG  + + +   GL S+  +  +L+D Y KCG
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCG 310


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 206/444 (46%), Gaps = 97/444 (21%)

Query: 46  RLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS 105
           +L+  Y  CG+  +   +FD M ++N + WN M+  + K+G  ++S+ LF +M +K    
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG--- 57

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
               I G  K  E  +A  LF+ +  R+ I+WNSMI  YV NG     + ++K++   + 
Sbjct: 58  ----IEG--KRSE--SASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM---MY 106

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             +  D   + +V+  CA    L  GK +HS  + +  +                   N 
Sbjct: 107 LGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFE----------------RRINF 150

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           +N +L+M               Y+ CG ++ A RVF++  + + V W SMI+GY  +   
Sbjct: 151 SNTLLDM---------------YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWS 195

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
             A++L  +M + GV  D   + S+L AC+  G L++GK VH +     +  ++ V +AL
Sbjct: 196 DGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNAL 255

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K                               CG +E A  +F TM  K +ISWN
Sbjct: 256 MDMYAK-------------------------------CGSMEGANSVFSTMVVKDIISWN 284

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +M+                      +L+ D  ++A ++ ACA++S+LE G+++   +   
Sbjct: 285 TMVG---------------------ELKPDSRTMACILPACASLSALERGKEIHGYILRN 323

Query: 466 GLDSDQIISTSLVDFYCKCGFIKM 489
           G  SD+ ++ +LVD Y KCG + +
Sbjct: 324 GYSSDRHVANALVDLYVKCGVLGL 347



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 181/438 (41%), Gaps = 129/438 (29%)

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------------------------ 98
           LFD++  R+  SWN+MI G++  G  E+ L ++  M                        
Sbjct: 69  LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGT 128

Query: 99  ----------------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
                            ++ +FS N L+  ++K G+L  A  +F  M  RN ++W SMI 
Sbjct: 129 LSLGKAVHSLAIKSSFERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 187

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            Y R+G++  A+ L +++     E ++ D   + +++ ACA   +L+ GK +H +I  N 
Sbjct: 188 GYTRDGWSDGAIILLQQMEK---EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN- 243

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
                                   N   N+      F  +AL+  YA CG M  A  VF 
Sbjct: 244 ------------------------NMASNL------FVCNALMDMYAKCGSMEGANSVFS 273

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLE 321
                  + WN+M+                      G L+ D+ T+A +L AC+SL  LE
Sbjct: 274 TMVVKDIISWNTMV----------------------GELKPDSRTMACILPACASLSALE 311

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            GK++HG+  + G   D  VA+AL+D Y K                              
Sbjct: 312 RGKEIHGYILRNGYSSDRHVANALVDLYVK------------------------------ 341

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            CG +  A+ +F  +P+K L+SW  MI G   +G   EA+  F  M    +  D+ S  S
Sbjct: 342 -CGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFIS 400

Query: 442 VISACANISSLELGEQVF 459
           ++ AC++   LE G + F
Sbjct: 401 ILYACSHSGLLEQGWRFF 418



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 95/362 (26%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +  +  +L  C    ++ +GK +H   +K       +  +N LL MY +CG+   A
Sbjct: 109 IDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSS-FERRINFSNTLLDMYSKCGDLDGA 167

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------- 101
           L +F++M  RN  SW +MI G+ + G  + ++ L   M ++                   
Sbjct: 168 LRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARS 227

Query: 102 --------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
                               N F  N L+  +AK G ++ A ++F+ M  ++ I+WN+M 
Sbjct: 228 GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM- 286

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
                                  V  L+ D+  +A ++ ACA L+ALE GK+IH +IL N
Sbjct: 287 -----------------------VGELKPDSRTMACILPACASLSALERGKEIHGYILRN 323

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G   D  + ++LV+LY KCG    A  + +M+   D    + +I+GY   G  N      
Sbjct: 324 GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN------ 377

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
                                    EA+  F++MR  G+  D  +  S+L ACS  G LE
Sbjct: 378 -------------------------EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 412

Query: 322 HG 323
            G
Sbjct: 413 QG 414


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 194/384 (50%), Gaps = 36/384 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C        G+Q+H  F+K G++     + N L+ +Y R G    A  + D MP R
Sbjct: 146 VLKACAAFCGFEEGRQIHGLFIKSGLVTDVF-VENTLVNVYGRSGYFEIARKVLDRMPVR 204

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+++  +++ G  +++  LF+ M ++N  SWN +ISG+A AG +K A+ +F+ MP
Sbjct: 205 DAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMP 264

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+ ++WN+M+  Y   G   E + +F ++  D  E+   D F L +V+ ACA L +L  
Sbjct: 265 VRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEK--PDGFTLVSVLSACASLGSLSQ 322

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H +I  +G++ +  L ++LV++Y KC                              
Sbjct: 323 GEWVHVYIDKHGIEIEGFLATALVDMYSKC------------------------------ 352

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            GK++ A  VF  T+      WNS+IS    +    +AL +F +M   G   +  T   V
Sbjct: 353 -GKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDACKLFSELKVYD 369
           LSAC+ +G L+  +++      V  ++  I     ++D   + G   +A +L +E+   +
Sbjct: 412 LSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADE 471

Query: 370 -TILLNTMITVYSSCGRIEDAKHI 392
            +ILL +++      G++E A+ I
Sbjct: 472 ASILLESLLGACKRFGQLEQAERI 495



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 180/393 (45%), Gaps = 69/393 (17%)

Query: 102 NDFSWNMLISGFAKAGELKT---ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           + FS + L++  A   E KT   A ++ N +   N    NS+I  Y  +     A+ +F+
Sbjct: 70  DTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFR 129

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
           E+   L+  +  D +    V+ ACA     E G+QIH   + +GL  D  + ++LVN+YG
Sbjct: 130 EM---LLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYG 186

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           + G F  A +VL+ M   D    ++L+S Y   G +++AR +FD   + +   WN MISG
Sbjct: 187 RSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISG 246

Query: 279 YISNNEDTEALLLFHKMR-------------------RNGVLE-------------DAST 306
           Y +     EA  +F  M                     N VLE             D  T
Sbjct: 247 YAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFT 306

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           L SVLSAC+SLG L  G+ VH +  K G+  +  +A+AL+D YSK               
Sbjct: 307 LVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK--------------- 351

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                           CG+I+ A  +FR    + + +WNS+I  LS +G   +AL++F  
Sbjct: 352 ----------------CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSE 395

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           M     + +  +   V+SAC ++  L+   ++F
Sbjct: 396 MVYEGFKPNGITFIGVLSACNHVGMLDQARKLF 428



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 152/331 (45%), Gaps = 66/331 (19%)

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS---ANQVLNMMKEPDDFCLSALISGY 248
           +Q H+ +L  GL  D+   S LV       +  +   A+ +LN +  P+ F  +++I  Y
Sbjct: 56  QQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAY 115

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
           AN              + T  V                 AL +F +M    V  D  +  
Sbjct: 116 AN--------------SSTPEV-----------------ALTVFREMLLGPVFPDKYSFT 144

Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MP-- 355
            VL AC++    E G+Q+HG   K G++ DV V + L++ Y + G           MP  
Sbjct: 145 FVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVR 204

Query: 356 ------------------SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
                              +A  LF E++  +    N MI+ Y++ G +++AK +F +MP
Sbjct: 205 DAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMP 264

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGE 456
            + ++SWN+M+   +  G   E L++F  M +    + D F+L SV+SACA++ SL  GE
Sbjct: 265 VRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGE 324

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            V   +   G++ +  ++T+LVD Y KCG I
Sbjct: 325 WVHVYIDKHGIEIEGFLATALVDMYSKCGKI 355



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 28/186 (15%)

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
           +ST   +LS       L   +Q H    K G+  D   AS L+   +    P        
Sbjct: 36  SSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEP-------- 87

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                      T+   +S   RI          PN    + NS+I   + + +P  AL +
Sbjct: 88  ----------KTVSYAHSILNRIGS--------PNG--FTHNSVIRAYANSSTPEVALTV 127

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M    +  DK+S   V+ ACA     E G Q+       GL +D  +  +LV+ Y +
Sbjct: 128 FREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGR 187

Query: 484 CGFIKM 489
            G+ ++
Sbjct: 188 SGYFEI 193


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/528 (27%), Positives = 246/528 (46%), Gaps = 115/528 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LL+SC       +GK +H   ++  I   ++ + N L+ +Y + G+ T A  +F+ M
Sbjct: 65  FSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSV-LYNSLISLYSKSGDLTKAKDVFETM 123

Query: 68  PR---RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLI-----SGF 113
            R   R+  SW+AM+  F   G +  +++LF       ++P  ND+ +  +I     S F
Sbjct: 124 GRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVP--NDYCYTAVIRACSNSDF 181

Query: 114 AKAGEL--------------------------------KTARTLFNDMPRRNAIAWNSMI 141
              G +                                + A  +F+ M   N + W  MI
Sbjct: 182 VGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              ++ GF REA+R F ++   ++   + D F L++V  ACA+L  L  G+Q+HS  + +
Sbjct: 242 TRCMQMGFPREAIRFFLDM---VLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRS 298

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL  D  +  SLV++Y KC    SA+                        G ++D R+VF
Sbjct: 299 GLADD--VECSLVDMYAKC----SAD------------------------GSVDDCRKVF 328

Query: 262 DRTTDTSSVMWNSMISGYISN-NEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGF 319
           DR  D S + W ++I+GY+ N N  TEA+ LF +M   G +E +  T +S   AC ++  
Sbjct: 329 DRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSD 388

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
              GKQV GHA K G+  +  V+++++  + K                            
Sbjct: 389 PRVGKQVLGHAFKRGLASNSSVSNSVISMFVK---------------------------- 420

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
              C R+EDA+  F ++  K+L+S+N+ + G  +N     A +L   + + +L +  F+ 
Sbjct: 421 ---CDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTF 477

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           AS++S  AN+ SL  GEQ+ ++V  +GL  +Q +  +L+  Y KCG I
Sbjct: 478 ASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSI 525



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 112/525 (21%), Positives = 224/525 (42%), Gaps = 117/525 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
           ++++C+    + VG+ +    +K G   S + +   L+ M+++  N   +A  +FD+M  
Sbjct: 172 VIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF--------------------------NVMPQKND 103
            N  +W  MI   M++G   ++++ F                          N+   +  
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQL 291

Query: 104 FSWNM-----------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCYVRN-G 148
            SW +           L+  +AK    G +   R +F+ M   + ++W ++I  Y++N  
Sbjct: 292 HSWAIRSGLADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCN 351

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A EA+ LF E+ +     ++ + F  ++   AC +++    GKQ+  H    GL  +S 
Sbjct: 352 LATEAINLFSEMITQ--GHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSS 409

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + +S+++++ KC                                +M DAR  F+  ++ +
Sbjct: 410 VSNSVISMFVKCD-------------------------------RMEDARTAFESLSEKN 438

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V +N+ + G   N +   A  L  ++    +   A T AS+LS  +++G L  G+Q+H 
Sbjct: 439 LVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHS 498

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K+G+                      +C         +  + N +I++YS CG I+ 
Sbjct: 499 QVLKLGL----------------------SC---------NQPVCNALISMYSKCGSIDT 527

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F  M N+++ISW SMI G +++G     L+ F  M K  ++ ++ +  +++SAC++
Sbjct: 528 ASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSH 587

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKCGFI 487
           +  +  G + F       +  D  I         +VD  C+ G +
Sbjct: 588 VGLVSEGWRHFN-----SMYEDHKIKPKMEHYACMVDLLCRAGLL 627



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 61/315 (19%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D+   ++++ +C        GK +H+ ++   ++ DSVL +SL++LY K GD   A  V 
Sbjct: 61  DSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVF 120

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
             M                             R      V W++M++ + +N  + +A+ 
Sbjct: 121 ETM----------------------------GRFGKRDVVSWSAMMACFGNNGREFDAIK 152

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTY 349
           LF +    G++ +     +V+ ACS+  F+  G+ + G   K G  + DV V  +L+D +
Sbjct: 153 LFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMF 212

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K                                   E+A  +F  M   ++++W  MI 
Sbjct: 213 VK------------------------------GENSFENAYKVFDKMSELNVVTWTLMIT 242

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
              Q G P EA+  F +M       DKF+L+SV SACA + +L LG Q+ +     GL  
Sbjct: 243 RCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRSGLAD 302

Query: 470 DQIISTSLVDFYCKC 484
           D  +  SLVD Y KC
Sbjct: 303 D--VECSLVDMYAKC 315



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 104/240 (43%), Gaps = 23/240 (9%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL       S+  G+Q+H   LK G L+   P+ N L+ MY +CG+   A  +F  M
Sbjct: 477 FASLLSGVANVGSLRKGEQIHSQVLKLG-LSCNQPVCNALISMYSKCGSIDTASRVFSLM 535

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
             RN  SW +MI GF K G  E+ L+ FN M ++    N+ ++  ++S  +  G +    
Sbjct: 536 DNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGW 595

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             FN M   + I      +  M+    R G   +A      +        Q D  +  T 
Sbjct: 596 RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP------FQADVLVWRTF 649

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
           +GAC   +  E GK     I    L+FD    ++   L N+Y   G +  + ++   MKE
Sbjct: 650 LGACRVHSNTELGKLAARKI----LEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKE 705


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 238/523 (45%), Gaps = 110/523 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     +  G ++H   +K G  +S + + N L+ +Y +C +   A  LFD M  R
Sbjct: 64  LLKACGIVEDLFCGAEIHGLAIKYGC-DSFVFVVNSLVALYAKCNDINGARKLFDRMYVR 122

Query: 71  N-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW------------------- 106
           N   SWN++I  +   G   ++L LF+ M +     N +++                   
Sbjct: 123 NDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQI 182

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N L++ + + G++  A  +F ++  ++ + WNSM+  +++NG  
Sbjct: 183 HAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLY 242

Query: 151 REAVRLFKEL-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            EA+  F +L N+DL    + D   + ++I A   L  L  GK+IH++ + NG D + ++
Sbjct: 243 SEALEFFYDLQNADL----KPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILV 298

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++L+++Y KC                   C             M+   R FD       
Sbjct: 299 GNTLIDMYAKC-------------------CC------------MSYGGRAFDLMAHKDL 327

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W +  +GY  N    +AL L  +++  G+  DA+ + S+L AC  L  L   K++HG 
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHG- 386

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                              Y+ RG  SD             +L NT+I VY  CG I+ A
Sbjct: 387 -------------------YTIRGGLSDP------------VLQNTIIDVYGECGIIDYA 415

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             IF ++  K ++SW SMI     NG   +AL++F +M +  L  D  +L S++SA  ++
Sbjct: 416 VRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSL 475

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           S+L+ G+++   +   G   +  IS +LVD Y +CG ++ D Y
Sbjct: 476 STLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVE-DAY 517



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 212/478 (44%), Gaps = 106/478 (22%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------- 102
           MY +CG+  DA ++FD+M  R+ F+WNAM+ G++  G    +L+++  M           
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 103 --------------------------------DFSWNMLISGFAKAGELKTARTLFNDMP 130
                                            F  N L++ +AK  ++  AR LF+ M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 131 RRN-AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
            RN  ++WNS+I  Y  NG   EA+ LF E+   L   +  + +  A  + AC D + ++
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEM---LKAGVVTNTYTFAAALQACEDSSFIK 177

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G QIH+ IL +G                         +VL      D +  +AL++ Y 
Sbjct: 178 LGMQIHAAILKSG-------------------------RVL------DVYVANALVAMYV 206

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             GKM +A  +F        V WNSM++G+I N   +EAL  F+ ++   +  D  ++ S
Sbjct: 207 RFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIIS 266

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           ++ A   LG+L +GK++H +A K G   +++V + L+D Y+K                  
Sbjct: 267 IIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK------------------ 308

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        C  +      F  M +K LISW +   G +QN   ++AL+L   +  
Sbjct: 309 -------------CCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQM 355

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             + +D   + S++ AC  ++ L   +++    TI G  SD ++  +++D Y +CG I
Sbjct: 356 EGMDVDATMIGSILLACRGLNCLGKIKEIHG-YTIRGGLSDPVLQNTIIDVYGECGII 412



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 202/435 (46%), Gaps = 77/435 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
            A  LQ+C     I +G Q+H   LK G +L+  + +AN L+ MY+R G   +A ++F  
Sbjct: 163 FAAALQACEDSSFIKLGMQIHAAILKSGRVLD--VYVANALVAMYVRFGKMPEAAVIFGN 220

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ-------------------- 100
           +  ++  +WN+M+ GF++ G   ++L+ F      ++ P                     
Sbjct: 221 LEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280

Query: 101 --------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                   KN F  N+L+       +AK   +      F+ M  ++ I+W +    Y +N
Sbjct: 281 KEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQN 340

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
               +A+ L ++L    +E +  DA ++ +++ AC  L  L   K+IH + +  GL  D 
Sbjct: 341 KCYLQALELLRQLQ---MEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DP 396

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
           VL ++++++YG+C                               G ++ A R+F+     
Sbjct: 397 VLQNTIIDVYGEC-------------------------------GIIDYAVRIFESIECK 425

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W SMIS Y+ N    +AL +F  M+  G+  D  TL S+LSA  SL  L+ GK++H
Sbjct: 426 DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIH 485

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   + G I +  +++ L+D Y++ G   DA K+F+  K  + IL   MI+ Y   G  E
Sbjct: 486 GFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGE 545

Query: 388 DAKHIFRTMPNKSLI 402
            A  +F  M ++ +I
Sbjct: 546 AAVELFMRMKDEKII 560



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 73/339 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK++H + +K G  +S + + N L+ MY +C   +     FD M  ++  SW     G+ 
Sbjct: 280 GKEIHAYAIKNG-FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYA 338

Query: 84  KLGHKEKSLQLFNVMPQK--------------------------------------NDFS 105
           +     ++L+L   +  +                                      +   
Sbjct: 339 QNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVL 398

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N +I  + + G +  A  +F  +  ++ ++W SMI CYV NG A +A+ +F  +     
Sbjct: 399 QNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKET-- 456

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L+ D   L +++ A   L+ L+ GK+IH  I+  G   +  + ++LV++Y        
Sbjct: 457 -GLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMY-------- 507

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                  A CG + DA ++F  T + + ++W +MIS Y  +   
Sbjct: 508 -----------------------ARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYG 544

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
             A+ LF +M+   ++ D  T  ++L ACS  G +  GK
Sbjct: 545 EAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGK 583


>gi|255550516|ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544538|gb|EEF46055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 599

 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 184/373 (49%), Gaps = 71/373 (19%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N +++ + K    + + ++F+  P KN  SWN +I G+A+ G    AR LF+ MP  N I
Sbjct: 46  NRVMDLYSKFNVIDSAQKVFDDNPIKNIHSWNTMIGGYARVGLFDNARDLFDKMPEPNLI 105

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           ++NS+I                                             +L+  +Q+H
Sbjct: 106 SYNSLIS-------------------------------------------GSLDLLRQVH 122

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
              ++ GL+F+ ++ ++L++ YGKCG  N++  + + M E D    ++++  YA   +M+
Sbjct: 123 GAAILIGLEFNVIVYNALIDSYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYARASRMD 182

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           DA R+F      ++V W S+I+G+  N    +AL LF +M+   VL  A T  +VL AC+
Sbjct: 183 DAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKALELFLQMQEENVLPSAFTFVTVLGACA 242

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L  +E GKQ+HGH         +I +S   D                   +++  + N 
Sbjct: 243 DLALIERGKQIHGH---------IIRSSGRTD-------------------LFNMYVYNA 274

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
           +I +Y  CG ++ +K +F  M  K ++SWNS+I GL+QNG   E+LDLF  M + +   +
Sbjct: 275 LIDMYCKCGDMKSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNRLPN 334

Query: 436 KFSLASVISACAN 448
             + + V+SAC++
Sbjct: 335 HVTFSGVLSACSH 347



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 61/304 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG----------------------- 81
           N ++  Y R G   +A  LFD+MP  N  S+N++I G                       
Sbjct: 77  NTMIGGYARVGLFDNARDLFDKMPEPNLISYNSLISGSLDLLRQVHGAAILIGLEFNVIV 136

Query: 82  -------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134
                  + K G    S  +F+ M +++  SW  ++  +A+A  +  A  LF +MP +N 
Sbjct: 137 YNALIDSYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYARASRMDDAFRLFMEMPVKNT 196

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           ++W S+I  + +NG + +A+ LF ++     E +   AF   TV+GACADLA +E GKQI
Sbjct: 197 VSWTSLIAGFAKNGHSYKALELFLQMQE---ENVLPSAFTFVTVLGACADLALIERGKQI 253

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H HI+ +    D      L N+Y                        +ALI  Y  CG M
Sbjct: 254 HGHIIRSSGRTD------LFNMY----------------------VYNALIDMYCKCGDM 285

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
             ++ +F+  ++   V WNS+I+G   N    E+L LF KM     L +  T + VLSAC
Sbjct: 286 KSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNRLPNHVTFSGVLSAC 345

Query: 315 SSLG 318
           S  G
Sbjct: 346 SHTG 349



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 155/324 (47%), Gaps = 43/324 (13%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           L  D     ++   C     L+ G  +HS ++   L       + +++LY K    +SA 
Sbjct: 3   LSPDVVQWISLFSKCISTRNLKLGLTLHSFLIKTALICSPFFSNRVMDLYSKFNVIDSAQ 62

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           +V +     +    + +I GYA  G  ++AR +FD+  + + + +NS+ISG         
Sbjct: 63  KVFDDNPIKNIHSWNTMIGGYARVGLFDNARDLFDKMPEPNLISYNSLISG--------- 113

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
                                       SL  L   +QVHG A  +G+  +VIV +AL+D
Sbjct: 114 ----------------------------SLDLL---RQVHGAAILIGLEFNVIVYNALID 142

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
           +Y K G  + +  +FS +   D +   +M+  Y+   R++DA  +F  MP K+ +SW S+
Sbjct: 143 SYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYARASRMDDAFRLFMEMPVKNTVSWTSL 202

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G ++NG   +AL+LF  M + ++    F+  +V+ ACA+++ +E G+Q+   +     
Sbjct: 203 IAGFAKNGHSYKALELFLQMQEENVLPSAFTFVTVLGACADLALIERGKQIHGHIIRSSG 262

Query: 468 DSD---QIISTSLVDFYCKCGFIK 488
            +D     +  +L+D YCKCG +K
Sbjct: 263 RTDLFNMYVYNALIDMYCKCGDMK 286



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 2/108 (1%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNS--TLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           +L +C     I  GKQ+H H ++         + + N L+ MY +CG+   +  LF+ M 
Sbjct: 237 VLGACADLALIERGKQIHGHIIRSSGRTDLFNMYVYNALIDMYCKCGDMKSSKSLFEGMS 296

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
            ++  SWN++I G  + GH E+SL LF  M + N    ++  SG   A
Sbjct: 297 EKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNRLPNHVTFSGVLSA 344


>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 146/550 (26%), Positives = 237/550 (43%), Gaps = 124/550 (22%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANR------LLQMYMRCGNPT-DALLLFDEMPR- 69
           H SI +  ++++ + K  I+N   PI  R      LL  +++  N T  AL    E+ R 
Sbjct: 18  HMSISIIVEIYIFYKKNEIINPLRPIEKRTMKRISLLHRHLQWRNLTVTALQRTPEIDRT 77

Query: 70  ---------RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
                      CFS   + +    L      L +  +   ++      L+S +   G ++
Sbjct: 78  IASIQSISSNPCFSLLGICKTVSSLRKIHALLVVHGL--SEDLLCETKLVSLYGSFGHVE 135

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL-QCDAFILATVI 179
            AR +F+ +   +  +W  MI  Y  N    E V+ +   N+ L + L + D  + + V+
Sbjct: 136 CARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFY---NTRLRKCLNEYDNVVFSIVL 192

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            AC++L   + G+++H  I+  G                                 PD F
Sbjct: 193 KACSELRETDEGRKLHCQIVKVG--------------------------------SPDSF 220

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
            L+ L+  YA C ++ D+RRVFD   D + V W SMI GY+ N+   E L+LF++MR   
Sbjct: 221 VLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGL 280

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG------------------------- 334
           V  +  TL S+++AC+ LG L  GK VHG+  K G                         
Sbjct: 281 VEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAF 340

Query: 335 -VID-----DVIVASALLDTYSKRGMPSDACKLFSE------------------------ 364
            V D     D++  +A++  Y++RG P +A KLF++                        
Sbjct: 341 SVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTG 400

Query: 365 --------------LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
                         L   D    N ++ +Y+ C  I DA+++F T+ +K +I+WNS+I G
Sbjct: 401 SLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISG 460

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            +QNG   EAL+LF  M    +  D  +L SV+SACA++ +  +G  +       GL S 
Sbjct: 461 YTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSG 520

Query: 471 QIISTSLVDF 480
           +  S SL  F
Sbjct: 521 RDCSRSLELF 530



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 219/500 (43%), Gaps = 102/500 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C+       G++LH   +K G  +S   +   L+ MY +C    D+  +FDE+  R
Sbjct: 191 VLKACSELRETDEGRKLHCQIVKVGSPDSF--VLTGLVDMYAKCREVEDSRRVFDEILDR 248

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           N   W +MI G+++    ++ L LFN M +                              
Sbjct: 249 NVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVH 308

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     N F    L+  + K G+++ A ++F+++   + ++W +MI  Y + G+ R
Sbjct: 309 GYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPR 368

Query: 152 EAVRLFK-ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           EA++LF  E   DL+     +    ++V+ ACA   +L  G+ +H   +  G + D+   
Sbjct: 369 EALKLFTDERWKDLLP----NTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSE-DATFE 423

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++LV++Y K                               C  + DAR VF+   D   +
Sbjct: 424 NALVDMYAK-------------------------------CHMIGDARYVFETVFDKDVI 452

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WNS+ISGY  N    EAL LF +MR + V  DA TL SVLSAC+S+G    G  +HG+A
Sbjct: 453 AWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYA 512

Query: 331 CKVGVIDDVIVASALL---DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            K G++     + +L    D   ++  P++             ++  T+++  S  G + 
Sbjct: 513 IKAGLLSGRDCSRSLELFGDMLKEKLEPNE-------------VIFTTILSACSHSGMLG 559

Query: 388 DAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           +    F TM        S+  +  M+  L++ G   EALD    + K+ ++ D   L + 
Sbjct: 560 EGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDF---IEKIPIQPDVSLLGAF 616

Query: 443 ISACANISSLELGEQVFARV 462
           +  C   S  +LGE    R+
Sbjct: 617 LHGCRLHSRFDLGEVAVRRM 636



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 192/463 (41%), Gaps = 96/463 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           L  L+ +C    ++H GK +H + +K G  LNS L     LL +Y +CG+  DA  +FDE
Sbjct: 288 LGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL--VTPLLDLYFKCGDIRDAFSVFDE 345

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ-------------------- 100
           +   +  SW AMI G+ + G+  ++L+LF      +++P                     
Sbjct: 346 LSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG 405

Query: 101 -----------KNDFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        D ++ N L+  +AK   +  AR +F  +  ++ IAWNS+I  Y +NG
Sbjct: 406 RSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNG 465

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           +A EA+ LF ++ SD V     DA  L +V+ ACA + A   G  +H + +  GL     
Sbjct: 466 YAYEALELFDQMRSDSVYP---DAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGRD 522

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
              SL  L+G          +L    EP++   + ++S  ++ G + +  R F       
Sbjct: 523 CSRSL-ELFG---------DMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYF------- 565

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
               N+M   Y           +   + R G LE+A            L F+E       
Sbjct: 566 ----NTMCQVYNFVPSMKHYACMVDLLARAGRLEEA------------LDFIE------- 602

Query: 329 HACKVGVIDDVIVASALLD---TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
              K+ +  DV +  A L     +S+  +   A +   EL          M  +Y+S GR
Sbjct: 603 ---KIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGR 659

Query: 386 IEDAKHIFRTMPNKSLI---SWNSMIVGLSQNGSPIEALDLFC 425
              A  +   M  + L     W+ + +  S + SP   L +FC
Sbjct: 660 WSQANQVMELMKQRGLAKLPGWSLVDIETSNDFSP---LIVFC 699



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 141/313 (45%), Gaps = 67/313 (21%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           +++G C  +++L   ++IH+ ++V+GL  D +  + LV+LYG                  
Sbjct: 91  SLLGICKTVSSL---RKIHALLVVHGLSEDLLCETKLVSLYGS----------------- 130

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                     G+  C     AR +FDR  +     W  MI  Y  N+  +E +  ++   
Sbjct: 131 ---------FGHVEC-----ARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRL 176

Query: 297 RNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R  + E D    + VL ACS L   + G+++H    KVG                    P
Sbjct: 177 RKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-------------------SP 217

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                        D+ +L  ++ +Y+ C  +ED++ +F  + +++++ W SMIVG  QN 
Sbjct: 218 -------------DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQND 264

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              E L LF  M +  +  ++++L S+++AC  + +L  G+ V   V   G D +  + T
Sbjct: 265 CLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVT 324

Query: 476 SLVDFYCKCGFIK 488
            L+D Y KCG I+
Sbjct: 325 PLLDLYFKCGDIR 337


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 149/562 (26%), Positives = 241/562 (42%), Gaps = 128/562 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKG---ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LLQ C    ++ +  QLH   +K+G    LN    + ++L+ +Y +CG    A  LF + 
Sbjct: 57  LLQGCVYERALPLALQLHADVIKRGPTFALNDF--VISKLVILYAKCGASEPATRLFRDS 114

Query: 68  PRRNCFSWNAMIE-------------GFMKL---GHKEKSLQLFNVMPQKNDFSW----- 106
           P  N FSW A+I              G++K+   G    +  L NV+       W     
Sbjct: 115 PSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGK 174

Query: 107 -------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                L+  + K G ++ A  +F++M  RN + WNSM+  Y +N
Sbjct: 175 GVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQN 234

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIG---ACADLAALEYGKQIHSHILVNGLD 204
           G  +EA+R+F+E+      RLQ     L  + G   ACA+  A+  G+Q H   +V GL+
Sbjct: 235 GMNQEAIRVFREM------RLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLE 288

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D+VLGSS++N Y K G    A  V   M   D    + +++GYA  G +          
Sbjct: 289 LDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVE--------- 339

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                 +AL +   MR  G+  D  TL+++L+  +    L  G 
Sbjct: 340 ----------------------KALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGM 377

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV----- 379
           + H +  K     DV+V+S ++D Y+K G    A ++FS ++  D +L NTM+       
Sbjct: 378 KAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQG 437

Query: 380 ------------------------------YSSCGRIEDAKHIFR------TMPNKSLIS 403
                                         +   G++ +A+++F        MPN  LI+
Sbjct: 438 LSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPN--LIT 495

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W +M+ GL QNG    A+ +F  M  + +R +  S+ S +S C +++ L+ G  +   V 
Sbjct: 496 WTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVM 555

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
              L     I TS++D Y KCG
Sbjct: 556 RRDLSQSIHIITSIMDMYAKCG 577



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/531 (22%), Positives = 234/531 (44%), Gaps = 114/531 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C     +  GK +H   +K   L   + +A  L+ MY +CG   DA  +FDEM
Sbjct: 157 LPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEM 216

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA------------- 114
             RN  +WN+M+  + + G  ++++++F  M  +      + +SGF              
Sbjct: 217 SERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGR 276

Query: 115 --------------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                                     K G ++ A  +F +M  ++ + WN ++  Y + G
Sbjct: 277 QGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFG 336

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ +   +     E L+ D   L+ ++   AD   L  G + H++ + N  + D V
Sbjct: 337 MVEKALEMCCVMRE---EGLRFDCVTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVV 393

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKE--------------------------------- 235
           + S ++++Y KCG  + A +V + +++                                 
Sbjct: 394 VSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLES 453

Query: 236 --PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM-----WNSMISGYISNNEDTEA 288
             P+    ++LI G+   G++ +AR +F     +S VM     W +M+SG + N   + A
Sbjct: 454 VPPNVVSWNSLIFGFFKNGQVAEARNMFAEMC-SSGVMPNLITWTTMMSGLVQNGFGSGA 512

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           +++F +M+  G+  ++ ++ S LS C+S+  L+HG+ +HG+  +  +   + + ++++D 
Sbjct: 513 MMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDM 572

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K                               CG ++ AK +F+    K L  +N+MI
Sbjct: 573 YAK-------------------------------CGSLDGAKCVFKMCSTKELYVYNAMI 601

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
              + +G   EAL LF  M K  +  D  +L SV+SAC++   ++ G +VF
Sbjct: 602 SAYASHGQAREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVF 652



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 68/390 (17%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           NDF  + L+  +AK G  + A  LF D P  N  +W ++I  + R GF  EA+  + ++ 
Sbjct: 87  NDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQ 146

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKC 220
            D    L  D F+L  V+ AC  L  + +GK +H+ ++   GL     + +SLV++YGKC
Sbjct: 147 QD---GLPPDNFVLPNVLKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKC 203

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                          G + DA +VFD  ++ + V WNSM+  Y 
Sbjct: 204 -------------------------------GAVEDAGKVFDEMSERNDVTWNSMVVTYA 232

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            N  + EA+ +F +MR  GV      L+   +AC++   +  G+Q HG A   G+  D +
Sbjct: 233 QNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNV 292

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           + S++++ Y K G+  +A  +F  + V D +  N ++  Y+  G +E             
Sbjct: 293 LGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVAGYAQFGMVE------------- 339

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
                             +AL++ C M +  LR D  +L+++++  A+   L LG +  A
Sbjct: 340 ------------------KALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAHA 381

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
                  + D ++S+ ++D Y KCG  +MD
Sbjct: 382 YCVKNDFEGDVVVSSGIIDMYAKCG--RMD 409



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 152/347 (43%), Gaps = 64/347 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           ++G  REAV    +++S     L     I  T++  C    AL    Q+H+ ++  G  F
Sbjct: 28  KHGRIREAVNSLTQMHS---LNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKRGPTF 84

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
                                   LN      DF +S L+  YA CG    A R+F  + 
Sbjct: 85  -----------------------ALN------DFVISKLVILYAKCGASEPATRLFRDSP 115

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W ++I  +       EAL  + KM+++G+  D   L +VL AC  L ++  GK 
Sbjct: 116 SPNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKG 175

Query: 326 VHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           VH    K +G+ + V VA++L+D Y K                               CG
Sbjct: 176 VHAFVVKTIGLKECVYVATSLVDMYGK-------------------------------CG 204

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            +EDA  +F  M  ++ ++WNSM+V  +QNG   EA+ +F  M    + +   +L+   +
Sbjct: 205 AVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFT 264

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           ACAN  ++  G Q      + GL+ D ++ +S+++FY K G I+  E
Sbjct: 265 ACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAE 311


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 190/400 (47%), Gaps = 80/400 (20%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N F  + L++ +AK G ++ AR +F +MPRRN +AW +++  +V+N   + A+ +F+E+ 
Sbjct: 98  NFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEM- 156

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
             L        + L+ V+ AC+ L +L+ G Q H++I+   LDFD+ +GS+L +LY KC 
Sbjct: 157 --LYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKC- 213

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                         G++ DA + F R  + + + W S +S    
Sbjct: 214 ------------------------------GRLEDALKAFSRIREKNVISWTSAVSACGD 243

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N    + L LF +M    +  +  TL S LS C  +  LE G QV     K G   ++ V
Sbjct: 244 NGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRV 303

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            ++LL  Y K G                                I +A   F  M + S+
Sbjct: 304 RNSLLYLYLKSGF-------------------------------IVEAHRFFNRMDDVSM 332

Query: 402 ISWNSMIVGLS-------------QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           ++WN+MI G +             Q GS  EAL +F  +N+  ++ D F+L+SV+S C+ 
Sbjct: 333 VTWNAMIAGHAQMMELTKDNLSACQRGS--EALKIFSKLNQSGMKPDLFTLSSVLSVCSR 390

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + ++E GEQ+ A+    G  SD I+STSL+  Y KCG I+
Sbjct: 391 MLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIE 430



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 209/479 (43%), Gaps = 93/479 (19%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   LLQ C    S    + +H H +K G  ++   + + L+ +Y +CGN  DA  +F+ 
Sbjct: 66  FYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFF-VMSFLVNVYAKCGNMEDARRVFEN 124

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS--------------------- 105
           MPRRN  +W  ++ GF++    + ++ +F  M     +                      
Sbjct: 125 MPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLG 184

Query: 106 ------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                              + L S ++K G L+ A   F+ +  +N I+W S +     N
Sbjct: 185 DQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDN 244

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   + +RLF E+ S   E ++ + F L + +  C ++ +LE G Q+ S  +  G + + 
Sbjct: 245 GAPVKGLRLFVEMIS---EDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNL 301

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + +SL+ LY K G    A++  N                               R  D 
Sbjct: 302 RVRNSLLYLYLKSGFIVEAHRFFN-------------------------------RMDDV 330

Query: 268 SSVMWNSMISGYISNNEDT-----------EALLLFHKMRRNGVLEDASTLASVLSACSS 316
           S V WN+MI+G+    E T           EAL +F K+ ++G+  D  TL+SVLS CS 
Sbjct: 331 SMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSR 390

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           +  +E G+Q+H    K G + DVIV+++L+  Y+K G    A K F E+     I   +M
Sbjct: 391 MLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSM 450

Query: 377 ITVYSSCGRIEDAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
           IT +S  G  + A HIF  M      PN   +++  ++   S  G   +AL+ F  M K
Sbjct: 451 ITGFSQHGMSQQALHIFEDMSLAGVRPNT--VTFVGVLSACSHAGMVSQALNYFEIMQK 507



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 31/160 (19%)

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VHGH  K G  D+  V S L++ Y+K                               CG 
Sbjct: 86  VHGHVMKTGCHDNFFVMSFLVNVYAK-------------------------------CGN 114

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +EDA+ +F  MP +++++W +++VG  QN  P  A+ +F  M         ++L++V+ A
Sbjct: 115 MEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHA 174

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           C+++ SL+LG+Q  A +    LD D  + ++L   Y KCG
Sbjct: 175 CSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCG 214



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 19/237 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L  C+   +I  G+Q+H   +K G L+  + ++  L+ MY +CG+   A   F EM
Sbjct: 381 LSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVI-VSTSLISMYNKCGSIERASKAFLEM 439

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             R   +W +MI GF + G  +++L +F  M     + N  ++  ++S  + AG +  A 
Sbjct: 440 STRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQAL 499

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M ++  I      +  M+  +VR G   +A+   K++N +  E      FI +  
Sbjct: 500 NYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSE------FIWSNF 553

Query: 179 IGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           I  C     LE G      +L +   D ++ +   L+N+Y     F+  ++V  MM+
Sbjct: 554 IAGCRSHGNLELGFYASEQLLSLKPKDPETYV--LLLNMYLSADRFDDVSRVRKMME 608


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 33/345 (9%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL--NSDLVERLQCDAFI 174
           GE + A  LF  +   NA  +N+MI  Y  N     A+ ++K++  N      +  D F 
Sbjct: 60  GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFT 119

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
              V+ +CA L   + GKQ+H H+   G   ++V+ +SLV +Y KC   + A++V   M 
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMT 179

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           E D    + LISG+   G+M  AR +F+   D +   W +++SGY       +AL  F +
Sbjct: 180 ERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+  G+  D  +L SVL  C+ LG LE GK +H +A K G + ++ V +AL++ Y+K   
Sbjct: 240 MQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAK--- 296

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                                       CG I+  + +F  M  + +ISW++MIVGL+ +
Sbjct: 297 ----------------------------CGSIDQGRRLFDQMKERDVISWSTMIVGLANH 328

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           G   EA++LF  M K  +     +   +++ACA+   L  G + F
Sbjct: 329 GRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYF 373



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 150/319 (47%), Gaps = 39/319 (12%)

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
           +   ++  C ++  L   K+IH+HI+   L   S L + +V++    G+   AN +   +
Sbjct: 16  MFVPILKDCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGV 72

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            +P+ F                               ++N+MI  Y  N     A+ ++ 
Sbjct: 73  ADPNAF-------------------------------LYNAMIRAYKHNKVYVLAITVYK 101

Query: 294 KM-----RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           +M       N +  D  T   V+ +C+ L   + GKQVHGH  K G   + +V ++L++ 
Sbjct: 102 QMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEM 161

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K     DA ++F E+   D +  NT+I+ +   G++  A+ IF  M +K++ SW +++
Sbjct: 162 YVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIV 221

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G ++ G   +AL+ F  M  + +  D+ SL SV+  CA + +LELG+ +       G  
Sbjct: 222 SGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFL 281

Query: 469 SDQIISTSLVDFYCKCGFI 487
            +  +  +L++ Y KCG I
Sbjct: 282 RNICVCNALIEMYAKCGSI 300



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 141/313 (45%), Gaps = 66/313 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++SC       +GKQ+H H  K G  ++T+ + N L++MY++C +  DA  +F+EM  R
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTV-VENSLVEMYVKCDSLDDAHRVFEEMTER 181

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN +I G ++LG   ++  +F  M  K  FSW  ++SG+A+ G             
Sbjct: 182 DAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIG------------- 228

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                       CY       +A+  F+ +    +E    D   L +V+  CA L ALE 
Sbjct: 229 ------------CYA------DALEFFRRMQMVGIEP---DEISLVSVLPDCAQLGALEL 267

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH +    G   +  + ++L+ +Y KCG  +   ++ + MKE D    S +I G AN
Sbjct: 268 GKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLAN 327

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+   AR                            EA+ LF +M++  +     T   +
Sbjct: 328 HGR---AR----------------------------EAIELFQEMQKAKIEPSIITFVGL 356

Query: 311 LSACSSLGFLEHG 323
           L+AC+  G L  G
Sbjct: 357 LTACAHAGLLNEG 369



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 19/237 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C    ++ +GK +H++  K G L + + + N L++MY +CG+      LFD+M
Sbjct: 252 LVSVLPDCAQLGALELGKWIHIYADKAGFLRN-ICVCNALIEMYAKCGSIDQGRRLFDQM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             R+  SW+ MI G    G   ++++LF  M     + +  ++  L++  A AG L    
Sbjct: 311 KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGL 370

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M R   I      +  +++    +G   +A+ L K++        + D+ I  ++
Sbjct: 371 RYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPR------KPDSPIWGSL 424

Query: 179 IGACADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           + +C     L+       H+L +   D  + +   L NLY   G ++  +++  +M+
Sbjct: 425 LSSCRSHGNLKIAVIAMEHLLELEPADTGNYV--LLSNLYADLGKWDGVSRMRKLMR 479


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 234/534 (43%), Gaps = 119/534 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 72  CFSWNAMIEGFMKLGHKEKS--------LQLFNVMP------------------------ 99
             +WNAM+ G+   G    +        +Q+  + P                        
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 100 ---------QKNDFSWNMLISG----------FAKAGELKTARTLFNDMPRRNAIAWNSM 140
                      N  S + L  G          +AK G L  AR +F+ MP RN + W+++
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  +V      +A  LFK + +  +  L   +  +A+ + ACA L  L  G+Q+H+ +  
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAK 368

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G+  D   G+SL+++Y K                                G ++ A  +
Sbjct: 369 SGVHADLTAGNSLLSMYAKA-------------------------------GLIDQAIAL 397

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD      +V +++++SGY+ N    EA L+F KM+   V  DA+T+ S++ ACS L  L
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           +HG+  HG          VI+          RG+ S+            T + N +I +Y
Sbjct: 458 QHGRCSHG---------SVII----------RGLASE------------TSICNALIDMY 486

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           + CGRI+ ++ +F  MP++ ++SWN+MI G   +G   EA  LF  MN L    D  +  
Sbjct: 487 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 546

Query: 441 SVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
            ++SAC++   +  G+  F  +    GL         +VD   + GF  +DE Y
Sbjct: 547 CLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF--LDEAY 598



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 192/463 (41%), Gaps = 118/463 (25%)

Query: 27  LHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG 86
           LH +   K  L   + +   LL MY +CG+   A  +FD MP RN  +W+A+I GF+   
Sbjct: 259 LHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCS 318

Query: 87  HKEKSLQLFNVM---------P-------------------------------QKNDFSW 106
              ++  LF  M         P                                 +  + 
Sbjct: 319 RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAG 378

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+S +AKAG +  A  LF++M  ++ +++++++  YV+NG A EA  +FK++ +  VE
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               DA  + ++I AC+ LAAL++G+  H  +++ GL  ++ + ++L+++Y KCG  + +
Sbjct: 439 P---DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLS 495

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            QV NMM   D                                V WN+MI+GY  +    
Sbjct: 496 RQVFNMMPSRD-------------------------------IVSWNTMIAGYGIHGLGK 524

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK---QVHGHA-----------CK 332
           EA  LF +M   G   D  T   +LSACS  G +  GK    V GH            C 
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584

Query: 333 V------GVID-------------DVIVASALLD---TYSKRGMPSDACKLFSELKVYDT 370
           V      G +D             DV V  ALL     Y    +     ++  EL    T
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 371 ILLNTMITVYSSCGRIEDAKHI--------FRTMPNKSLISWN 405
                +  +YS+ GR ++A  +        F+  P  S I  N
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 165/385 (42%), Gaps = 76/385 (19%)

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG--FAREAVRLFKELNSDLVERLQCDAF 173
           +G L  A  LF+ +P  +   +N +I  Y  +    A + + L++ +   L  R+  + +
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRM---LRHRVAPNNY 126

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
                + AC+ LA    G+ IH H +  GL  D  + ++L+++Y KC     A  +   M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              D    +A+++GYA+ G                  M++  ++  +S        +  H
Sbjct: 187 PARDLVAWNAMLAGYAHHG------------------MYHHAVAHLLSMQ------MQMH 222

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH---AC-------KVGVIDDVIVAS 343
           ++R N     ASTL ++L   +  G L  G  VH +   AC       K  + D V++ +
Sbjct: 223 RLRPN-----ASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 277

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           ALLD Y+K                               CG +  A+ +F  MP ++ ++
Sbjct: 278 ALLDMYAK-------------------------------CGSLLYARRVFDAMPARNEVT 306

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARV 462
           W+++I G        +A  LF  M    L  +   S+AS + ACA++  L +GEQ+ A +
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFI 487
              G+ +D     SL+  Y K G I
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLI 391



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 46/268 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 401

Query: 68  PRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMP------------------QKND 103
             ++  S++A++ G+++ G  E      K +Q  NV P                  Q   
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461

Query: 104 FSW---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
            S                N LI  +AK G +  +R +FN MP R+ ++WN+MI  Y  +G
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 521

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             +EA  LF E+N+        D      ++ AC+    +  GK    H++ +G      
Sbjct: 522 LGKEATALFLEMNN---LGFPPDGVTFICLLSACSHSGLVIEGKHWF-HVMGHGYGLTPR 577

Query: 209 LGS--SLVNLYGKCGDFNSANQVLNMMK 234
           +     +V+L  + G  + A + +  M 
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSMP 605


>gi|302796316|ref|XP_002979920.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
 gi|300152147|gb|EFJ18790.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
          Length = 719

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 229/525 (43%), Gaps = 116/525 (22%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---- 98
           +A  LL  Y +CG+   A  +F  M  R+  SW A+I G+ + GH  ++L L+  M    
Sbjct: 64  VATALLNAYGKCGDLESAGAIFRGMEERDLISWTALITGYAQFGHSRQALDLYREMLMDG 123

Query: 99  --PQKNDF---------------------------------SWNMLISGFAKAGELKTAR 123
             P +  F                                   N ++  + + G ++ A+
Sbjct: 124 VSPSRITFLSLLSACTKLGSLREASLVHDHIRQSGNQQGLSIQNGVVCMYHRCGSVENAK 183

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F+ MPRR+ I+W SMI  Y ++G   +A+RL++ +    +E  + +       + ACA
Sbjct: 184 LVFDAMPRRDVISWTSMIAAYAQSGSCDDAIRLYRRME---LEGEKPNKVTFLAAMEACA 240

Query: 184 -DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG-DFNSANQVLNMMKEPDDFCL 241
             LA  E  + +H  ++ +GL+ D V+ ++LVN+YGK       A ++ + +++ D+   
Sbjct: 241 KSLAPEEEAEALHRCVIESGLETDVVVATALVNMYGKSARTLGRAQEIFDGVEKRDNVVW 300

Query: 242 SALISGYAN-----------------------------------CGKMNDARRVFDRTTD 266
           +ALI+ YA                                    CG   DA R+F+ +  
Sbjct: 301 NALIAAYAQHGCRDRALDLLEQMQRQSFESDSIVRNALMNMYGKCGCAEDALRLFEASPR 360

Query: 267 TSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +V+ WN++I+ +  N E   +++LFH+M+  GV  D +TL +VL AC++   L  G+ 
Sbjct: 361 LQNVISWNTVIAVHAQNGEHQRSMVLFHRMQLAGVPADRATLLTVLYACTNPAALRTGRI 420

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           V   A + G   +V   +AL                               + +++ C  
Sbjct: 421 VRELATQRGYHHEVKFQTAL-------------------------------VLMHAKCET 449

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGL-----SQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           ++ A  +F +M ++   SWN+M+        S NG   E+  L   M       D  +L 
Sbjct: 450 LDAAVEVFESMHHRDTPSWNAMVAAYGYHACSLNGRWKESFKLLQQMQVDGAVPDTVTLV 509

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +V+SACA  S++  G  V       GL SD  ++  +VDFY KCG
Sbjct: 510 TVLSACAAGSAIAKGRAVHRFAAENGLMSDVAVANGVVDFYGKCG 554



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 202/455 (44%), Gaps = 81/455 (17%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPRRNCFSWNAMIEGF 82
            + LH   ++ G L + + +A  L+ MY +       A  +FD + +R+   WNA+I  +
Sbjct: 249 AEALHRCVIESG-LETDVVVATALVNMYGKSARTLGRAQEIFDGVEKRDNVVWNALIAAY 307

Query: 83  MKLGHKEKSLQLFNVMPQKNDFS-----WNMLISGFAKAGELKTARTLFNDMPR-RNAIA 136
            + G ++++L L   M Q+  F       N L++ + K G  + A  LF   PR +N I+
Sbjct: 308 AQHGCRDRALDLLEQM-QRQSFESDSIVRNALMNMYGKCGCAEDALRLFEASPRLQNVIS 366

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WN++I  + +NG  + ++ LF  +    +  +  D   L TV+ AC + AAL  G+ +  
Sbjct: 367 WNTVIAVHAQNGEHQRSMVLFHRMQ---LAGVPADRATLLTVLYACTNPAALRTGRIVRE 423

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
                G   +    ++LV ++ KC   ++A +                            
Sbjct: 424 LATQRGYHHEVKFQTALVLMHAKCETLDAAVE---------------------------- 455

Query: 257 ARRVFDRTTDTSSVMWNSMISGYIS-----NNEDTEALLLFHKMRRNGVLEDASTLASVL 311
              VF+      +  WN+M++ Y       N    E+  L  +M+ +G + D  TL +VL
Sbjct: 456 ---VFESMHHRDTPSWNAMVAAYGYHACSLNGRWKESFKLLQQMQVDGAVPDTVTLVTVL 512

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           SAC++   +  G+ VH  A + G++ DV VA+ ++D Y K                    
Sbjct: 513 SACAAGSAIAKGRAVHRFAAENGLMSDVAVANGVVDFYGK-------------------- 552

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
                      CG + +A+ +   M     ++WNS++ G +Q+G  +E L+ F  M    
Sbjct: 553 -----------CGCLLEARAVLDKMAKLDEVTWNSLLAGYAQHGYGVETLEAFTEMQHRG 601

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
              ++ +  SV+ AC+++  +  G + F+  ++IG
Sbjct: 602 YSANRITFMSVLHACSHVGLVAEGCKYFS--SMIG 634



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 75/348 (21%)

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD---LAALEYGKQIHS 196
           MI    ++G   +A  LF++L+   V  L     ++AT+    AD    +  E  ++IH 
Sbjct: 1   MITANAQSGNYTQAFALFQKLHVHGV--LPNQIALVATLNSCLADHQVRSVHECAREIHC 58

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
                  + + ++ ++L+N YGKCGD  SA  +   M+E D    +ALI+GYA  G    
Sbjct: 59  -------EHEKIVATALLNAYGKCGDLESAGAIFRGMEERDLISWTALITGYAQFG---- 107

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
                                         +AL L+ +M  +GV     T  S+LSAC+ 
Sbjct: 108 ---------------------------HSRQALDLYREMLMDGVSPSRITFLSLLSACTK 140

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           LG L     VH H  + G               +++G+                 + N +
Sbjct: 141 LGSLREASLVHDHIRQSG---------------NQQGLS----------------IQNGV 169

Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
           + +Y  CG +E+AK +F  MP + +ISW SMI   +Q+GS  +A+ L+  M     + +K
Sbjct: 170 VCMYHRCGSVENAKLVFDAMPRRDVISWTSMIAAYAQSGSCDDAIRLYRRMELEGEKPNK 229

Query: 437 FSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCK 483
            +  + + ACA   + E   +   R  I  GL++D +++T+LV+ Y K
Sbjct: 230 VTFLAAMEACAKSLAPEEEAEALHRCVIESGLETDVVVATALVNMYGK 277



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 36/215 (16%)

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKV 333
           MI+    +   T+A  LF K+  +GVL +   L + L++C      +H  + VH  A ++
Sbjct: 1   MITANAQSGNYTQAFALFQKLHVHGVLPNQIALVATLNSC----LADHQVRSVHECAREI 56

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
               + IVA+ALL+ Y K                               CG +E A  IF
Sbjct: 57  HCEHEKIVATALLNAYGK-------------------------------CGDLESAGAIF 85

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
           R M  + LISW ++I G +Q G   +ALDL+  M    +   + +  S++SAC  + SL 
Sbjct: 86  RGMEERDLISWTALITGYAQFGHSRQALDLYREMLMDGVSPSRITFLSLLSACTKLGSLR 145

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
               V   +   G      I   +V  Y +CG ++
Sbjct: 146 EASLVHDHIRQSGNQQGLSIQNGVVCMYHRCGSVE 180



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 44/176 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    +I  G+ +H    + G++ S + +AN ++  Y +CG   +A  + D+M
Sbjct: 508 LVTVLSACAAGSAIAKGRAVHRFAAENGLM-SDVAVANGVVDFYGKCGCLLEARAVLDKM 566

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM------------------- 108
            + +  +WN+++ G+ + G+  ++L+ F  M Q   +S N                    
Sbjct: 567 AKLDEVTWNSLLAGYAQHGYGVETLEAFTEM-QHRGYSANRITFMSVLHACSHVGLVAEG 625

Query: 109 ----------------------LISGFAKAGELKTARTLFNDMP-RRNAIAWNSMI 141
                                 +I    +AG L  A+ L   MP + N IAW S++
Sbjct: 626 CKYFSSMIGDYGFQPIEEHCGCMIDLLGRAGHLSEAKMLLARMPFKPNLIAWMSLL 681



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/271 (18%), Positives = 99/271 (36%), Gaps = 49/271 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C    ++  G+ +     ++G  +  +     L+ M+ +C     A+ +F+ M
Sbjct: 402 LLTVLYACTNPAALRTGRIVRELATQRG-YHHEVKFQTALVLMHAKCETLDAAVEVFESM 460

Query: 68  PRRNCFSWNAMIEGFMKL-----GHKEKSLQLFNVMPQKNDFS----------------- 105
             R+  SWNAM+  +        G  ++S +L   M                        
Sbjct: 461 HHRDTPSWNAMVAAYGYHACSLNGRWKESFKLLQQMQVDGAVPDTVTLVTVLSACAAGSA 520

Query: 106 ----------------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                                  N ++  + K G L  AR + + M + + + WNS++  
Sbjct: 521 IAKGRAVHRFAAENGLMSDVAVANGVVDFYGKCGCLLEARAVLDKMAKLDEVTWNSLLAG 580

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNG 202
           Y ++G+  E +  F E+          +     +V+ AC+ +  +  G K   S I   G
Sbjct: 581 YAQHGYGVETLEAFTEMQH---RGYSANRITFMSVLHACSHVGLVAEGCKYFSSMIGDYG 637

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
                     +++L G+ G  + A  +L  M
Sbjct: 638 FQPIEEHCGCMIDLLGRAGHLSEAKMLLARM 668


>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
          Length = 700

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 146/522 (27%), Positives = 227/522 (43%), Gaps = 113/522 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           LQSC         ++LH   L  G  + T+ +A +L++ Y + G+   AL +FD MPRRN
Sbjct: 58  LQSCPDFQE---ARRLHAAVLVGGHGHGTVLVA-QLVRAYAKLGDVAHALRVFDGMPRRN 113

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS-------------------------W 106
            F+WNA+I+G +  G   ++L++F  M      +                         W
Sbjct: 114 SFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVW 173

Query: 107 NM-------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
            M                   L+  FAK G L  AR +F  M  R+  AW +MI   V +
Sbjct: 174 EMVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHS 233

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   E V LF  + S   E    D+ I ATVI AC     L+ G  +H   + +G   D 
Sbjct: 234 GNWLEVVDLFNHMRS---EGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDI 290

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++LV++Y KCG                             C +M D   +F  T   
Sbjct: 291 YVSNALVDMYCKCG-----------------------------CVEMADC--LFWSTNSK 319

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W+S+I GY  N     ++ LF +M   G+  ++STLAS+L   S L  +  GK++H
Sbjct: 320 DVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIH 379

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             + + G+     V SAL+D YSK+G+          ++V +TI   T+           
Sbjct: 380 CFSIRHGLERSEFVVSALIDLYSKQGL----------IRVAETIFWLTL----------- 418

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
                     +K L  WNSM+ G + NG    A      + K+ L+ D  ++ SV+  C 
Sbjct: 419 ----------DKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCN 468

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
               L  G+++ A V    ++S   ++ +L+D YCKCGF+++
Sbjct: 469 QHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEV 510



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 179/383 (46%), Gaps = 60/383 (15%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  +AK G++  A  +F+ MPRRN+ AWN++I   V  G   EA+ +F  + +D    +
Sbjct: 89  LVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVND--GSV 146

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D F    VI ACA L A+  G+++   +                       D  S N 
Sbjct: 147 AVDGFTYPPVIKACAALGAVAQGRKVWEMVE---------------------ADIASGN- 184

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                  P+ F   AL+  +A CG +++AR VF+         W +MI G + +    E 
Sbjct: 185 -----ARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEV 239

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           + LF+ MR  G   D+   A+V+SAC   G L+ G  +HG A K G   D+ V++AL+D 
Sbjct: 240 VDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDM 299

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K                               CG +E A  +F +  +K ++SW+S+I
Sbjct: 300 YCK-------------------------------CGCVEMADCLFWSTNSKDVVSWSSLI 328

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           VG SQNG    ++ LFC M  L +  +  +LAS++   + +  +  G+++       GL+
Sbjct: 329 VGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLE 388

Query: 469 SDQIISTSLVDFYCKCGFIKMDE 491
             + + ++L+D Y K G I++ E
Sbjct: 389 RSEFVVSALIDLYSKQGLIRVAE 411



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 110/487 (22%), Positives = 202/487 (41%), Gaps = 107/487 (21%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----- 101
           L+ M+ +CG   +A  +F+ M  R+  +W AMI G +  G+  + + LFN M  +     
Sbjct: 195 LVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVD 254

Query: 102 ----------------------------------NDFSWNMLISGFAKAGELKTARTLFN 127
                                             + +  N L+  + K G ++ A  LF 
Sbjct: 255 SLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFW 314

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
               ++ ++W+S+I  Y +NG    +V LF E+ S     +  ++  LA+++   + L  
Sbjct: 315 STNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMIS---LGINPNSSTLASILPCLSVLKL 371

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           +  GK+IH   + +GL                               E  +F +SALI  
Sbjct: 372 IRSGKEIHCFSIRHGL-------------------------------ERSEFVVSALIDL 400

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y+  G +  A  +F  T D    +WNSM++GY  N     A      +++ G+  D  T+
Sbjct: 401 YSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTV 460

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SVL  C+    L  GK++H +  K  +     V +ALLD Y K                
Sbjct: 461 VSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCK---------------- 504

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
                          CG +E AK +F+ M  ++ +++N +I    ++    +AL  F  M
Sbjct: 505 ---------------CGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLM 549

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGF 486
            +  +  DK +  +++S C++   ++ G  ++ + +    +  ++   + +VD Y +CG 
Sbjct: 550 KRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCG- 608

Query: 487 IKMDEYY 493
            K+DE +
Sbjct: 609 -KLDEAW 614



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 185/438 (42%), Gaps = 86/438 (19%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A ++ +C     + VG  LH   +K G  +  + ++N L+ MY +CG    A  LF    
Sbjct: 259 ATVISACGRAGELQVGTALHGCAVKSGA-SGDIYVSNALVDMYCKCGCVEMADCLFWSTN 317

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP------------- 99
            ++  SW+++I G+ + G    S+ LF                +++P             
Sbjct: 318 SKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKE 377

Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                     ++++F  + LI  ++K G ++ A T+F     ++   WNSM+  Y  NG+
Sbjct: 378 IHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGY 437

Query: 150 AREA---VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +  A   +RL +++       L+ D   + +V+  C     L  GK++H++++       
Sbjct: 438 SDSAFCALRLLQKVG------LKPDHVTVVSVLPLCNQHHMLIQGKELHAYVI------- 484

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
                        C   NS   V N           AL+  Y  CG +  A+ VF   T+
Sbjct: 485 -----------KYC--INSVCSVNN-----------ALLDMYCKCGFLEVAKEVFQLMTE 520

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            ++V +N +IS +  +N + +AL  F  M+R+G+  D  T  ++LS CS  G ++ G  +
Sbjct: 521 RNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHL 580

Query: 327 -HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI-LLNTMITVYSSCG 384
            H       +  +    S ++D YS+ G   +A    S +     I +L  ++       
Sbjct: 581 YHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHN 640

Query: 385 RIEDA----KHIFRTMPN 398
           R++ A    K IF   PN
Sbjct: 641 RMDIAELVGKRIFEQNPN 658



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 47/249 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  CN HH +  GK+LH + +K  I NS   + N LL MY +CG    A  +F  M  R
Sbjct: 463 VLPLCNQHHMLIQGKELHAYVIKYCI-NSVCSVNNALLDMYCKCGFLEVAKEVFQLMTER 521

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTART 124
           N  ++N +I  F K  H++++L  F++M      P K  F    L+S  + AG +     
Sbjct: 522 NTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFV--ALLSCCSHAGLIDKGLH 579

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           L++ M     I+     ++ ++  Y R G   EA        S++ E  + D  +L  ++
Sbjct: 580 LYHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFM----SNMAEEPEID--VLGGLL 633

Query: 180 GAC-----ADLAALEYGKQIHS--------HILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            AC      D+A L  GK+I          HIL             L N+Y   G ++  
Sbjct: 634 AACRVHNRMDIAEL-VGKRIFEQNPNDPGYHIL-------------LSNIYADAGMWSDV 679

Query: 227 NQVLNMMKE 235
            ++  M++E
Sbjct: 680 TRIRTMIQE 688


>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 235/529 (44%), Gaps = 84/529 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT-DALLLFDE 66
           +A +L  C     +  GK +H + +K G    TL   N L+ MY +CG  + DA  +FD 
Sbjct: 149 VATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLG-GNALVSMYAKCGLVSHDAYAVFDN 207

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKNDFS------------------ 105
           +  ++  SWNAMI G  +    E +  LF+ M   P + +++                  
Sbjct: 208 IAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAY 267

Query: 106 ------------W----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                       W          N LIS + K G+++ A  LF  M  R+ + WN+ I  
Sbjct: 268 YCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAG 327

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG- 202
           Y  NG   +A+ LF  L S  +E L  D+  + +++ ACA L  L+ GKQIH++I  +  
Sbjct: 328 YTSNGEWLKALHLFGNLAS--LETLLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPF 385

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L +D+ +G+                               AL+S YA CG   +A   F 
Sbjct: 386 LFYDTAVGN-------------------------------ALVSFYAKCGYTEEAYHTFS 414

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
             +    + WNS+   +      +  L L H M +  +  D+ T+ +++  C+SL  +E 
Sbjct: 415 MISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEK 474

Query: 323 GKQVHGHACKVGVI---DDVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMIT 378
            K++H ++ + G +       V +A+LD YSK G    A K+F  L +  + +  N++I+
Sbjct: 475 VKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLIS 534

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
            Y   G   DA  IF  M    L +WN M+   ++N  P +AL L   +    ++ D  +
Sbjct: 535 GYVGLGSHHDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVT 594

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           + S++  C  ++S+ L  Q    + I     D  +  +L+D Y KCG I
Sbjct: 595 IMSLLPVCTQMASVHLLSQCQGYI-IRSCFKDLHLEAALLDAYAKCGII 642



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/510 (25%), Positives = 232/510 (45%), Gaps = 85/510 (16%)

Query: 3   TRIDY--LARLLQSCNTHH---SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP 57
           TR +Y  +A +L  C +     + + G+Q+H + L+   L++ + + N L+ +Y++ G  
Sbjct: 244 TRPNYATVANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQM 303

Query: 58  TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMPQ 100
            +A  LF  M  R+  +WNA I G+   G   K+L LF                 +++P 
Sbjct: 304 REAEALFWTMDARDLVTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPA 363

Query: 101 ------------------KNDFSW------NMLISGFAKAGELKTARTLFNDMPRRNAIA 136
                             ++ F +      N L+S +AK G  + A   F+ +  ++ I+
Sbjct: 364 CAQLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLIS 423

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WNS+   +   G  R   R    L+  L  R++ D+  +  +I  CA L  +E  K+IHS
Sbjct: 424 WNSIFDAF---GEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHS 480

Query: 197 HILVNGL---DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGYANCG 252
           + +  G    +    +G+++++ Y KCG+   AN++   + E  +    ++LISGY   G
Sbjct: 481 YSIRTGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLG 540

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
             +DA  +F   ++T    WN M+  Y  N+   +AL L H+++  G+  D  T+ S+L 
Sbjct: 541 SHHDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLP 600

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
            C+ +  +    Q  G+  +     D+ + +ALLD Y+                      
Sbjct: 601 VCTQMASVHLLSQCQGYIIR-SCFKDLHLEAALLDAYA---------------------- 637

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
                     CG I  A  IF+    K L+ + +MI G + +G   EAL +F +M KL +
Sbjct: 638 ---------KCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKLGI 688

Query: 433 RMDKFSLASVISACANISSLELGEQVFARV 462
           + D     S++SAC++   ++ G ++F  +
Sbjct: 689 QPDHIIFTSILSACSHAGRVDEGLKIFYSI 718



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 210/488 (43%), Gaps = 133/488 (27%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANR-LLQMYMRCGNPTDALLLFDE 66
           LA +L+SC+   + ++G+ LH + +K+G  + +  + N+ LL MY +C            
Sbjct: 46  LAAILKSCSALLAPNLGRTLHGYVVKQG--HGSCHVTNKGLLNMYAKC------------ 91

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
                              G   + L+LF+ +   +   WN+++SGF+ +          
Sbjct: 92  -------------------GMLVECLKLFDQLSHCDPVVWNIVLSGFSGS---------- 122

Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
                               N    + +R+F+ ++S   E L  ++  +ATV+  CA L 
Sbjct: 123 --------------------NKCDADVMRVFRMMHSSR-EALP-NSVTVATVLPVCARLG 160

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
            L+ GK +H +++ +G D D++ G++LV++Y KCG                      L+S
Sbjct: 161 DLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCG----------------------LVS 198

Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
                   +DA  VFD       V WN+MI+G   N    +A LLF  M +     + +T
Sbjct: 199 --------HDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYAT 250

Query: 307 LASVLSACSSLG---FLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLF 362
           +A++L  C+S         G+Q+H +  +   +  DV V +AL+  Y K G   +A  LF
Sbjct: 251 VANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEALF 310

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
             +   D +  N  I  Y+S                               NG  ++AL 
Sbjct: 311 WTMDARDLVTWNAFIAGYTS-------------------------------NGEWLKALH 339

Query: 423 LFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDF 480
           LF N+  L+ L  D  ++ S++ ACA + +L++G+Q+ A +     L  D  +  +LV F
Sbjct: 340 LFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSF 399

Query: 481 YCKCGFIK 488
           Y KCG+ +
Sbjct: 400 YAKCGYTE 407



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 166/370 (44%), Gaps = 70/370 (18%)

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           M  R+   W S+I          EA+ LF        E  + D  +LA ++ +C+ L A 
Sbjct: 1   MLGRDFKTWGSVIWSLCLEAKHSEALSLFHHCLKGH-EAFKPDHTVLAAILKSCSALLAP 59

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             G+ +H +++  G              +G C   N    +LNM               Y
Sbjct: 60  NLGRTLHGYVVKQG--------------HGSCHVTNKG--LLNM---------------Y 88

Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE-DTEALLLFHKMRRN-GVLEDAST 306
           A CG + +  ++FD+ +    V+WN ++SG+  +N+ D + + +F  M  +   L ++ T
Sbjct: 89  AKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCDADVMRVFRMMHSSREALPNSVT 148

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           +A+VL  C+ LG L+ GK VHG+  K G                           F +  
Sbjct: 149 VATVLPVCARLGDLDAGKCVHGYVIKSG---------------------------FDQ-- 179

Query: 367 VYDTILLNTMITVYSSCGRI-EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
             DT+  N ++++Y+ CG +  DA  +F  +  K ++SWN+MI GL++N    +A  LF 
Sbjct: 180 --DTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFS 237

Query: 426 NMNKLDLRMDKFSLASVISACANIS---SLELGEQVFARV-TIIGLDSDQIISTSLVDFY 481
           +M K   R +  ++A+++  CA+     +   G Q+ + V     L +D  +  +L+  Y
Sbjct: 238 SMVKGPTRPNYATVANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLY 297

Query: 482 CKCGFIKMDE 491
            K G ++  E
Sbjct: 298 LKVGQMREAE 307



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 37/294 (12%)

Query: 76  NAMIEGFMKLGHKEKSLQLF-NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134
           NA+++ + K G+ E + ++F N+  ++N  + N LISG+   G    A  +F+ M   + 
Sbjct: 498 NAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDL 557

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
             WN M+  Y  N    +A+ L  EL +     ++ D   + +++  C  +A++    Q 
Sbjct: 558 TTWNLMVRVYAENDCPEQALGLCHELQA---RGMKPDTVTIMSLLPVCTQMASVHLLSQC 614

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
             +I+ +                                   D    +AL+  YA CG +
Sbjct: 615 QGYIIRSCFK--------------------------------DLHLEAALLDAYAKCGII 642

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
             A ++F  + +   VM+ +MI GY  +    EAL +F  M + G+  D     S+LSAC
Sbjct: 643 GRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKLGIQPDHIIFTSILSAC 702

Query: 315 SSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           S  G ++ G ++     K+ G+   V   + ++D  ++ G  S+A  L + L +
Sbjct: 703 SHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLLARGGRISEAYSLVTSLPI 756



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 33/224 (14%)

Query: 272 WNSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           W S+I       + +EAL LFH   +       D + LA++L +CS+L     G+ +HG+
Sbjct: 9   WGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGRTLHGY 68

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE-D 388
             K G     +    LL+ Y+K GM  +  KLF +L   D ++ N +++ +S   + + D
Sbjct: 69  VVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCDAD 128

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
              +FR M                   S  EAL             +  ++A+V+  CA 
Sbjct: 129 VMRVFRMM------------------HSSREALP------------NSVTVATVLPVCAR 158

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +  L+ G+ V   V   G D D +   +LV  Y KCG +  D Y
Sbjct: 159 LGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAY 202


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 234/534 (43%), Gaps = 119/534 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C+     H G+ +H H +  G L + L ++  LL MY++C    DA  +F  MP R+
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAG-LQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 72  CFSWNAMIEGFMKLGHKEKS--------LQLFNVMP------------------------ 99
             +WNAM+ G+   G    +        +Q+  + P                        
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 100 ---------QKNDFSWNMLISG----------FAKAGELKTARTLFNDMPRRNAIAWNSM 140
                      N  S + L  G          +AK G L  AR +F+ MP RN + W+++
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  +V      +A  LFK + +  +  L   +  +A+ + ACA L  L  G+Q+H+ +  
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHALLAK 368

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
           +G+  D   G+SL+++Y K                                G ++ A  +
Sbjct: 369 SGVHADLTAGNSLLSMYAKA-------------------------------GLIDQAIAL 397

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD      +V +++++SGY+ N    EA L+F KM+   V  DA+T+ S++ ACS L  L
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           +HG+  HG          VI+          RG+ S+            T + N +I +Y
Sbjct: 458 QHGRCSHG---------SVII----------RGLASE------------TSICNALIDMY 486

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           + CGRI+ ++ +F  MP++ ++SWN+MI G   +G   EA  LF  MN L    D  +  
Sbjct: 487 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 546

Query: 441 SVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYY 493
            ++SAC++   +  G+  F  +    GL         +VD   + GF  +DE Y
Sbjct: 547 CLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGF--LDEAY 598



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 195/471 (41%), Gaps = 118/471 (25%)

Query: 19  HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
           H+  +   LH +   K  L   + +   LL MY +CG+   A  +FD MP RN  +W+A+
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 79  IEGFMKLGHKEKSLQLFNVM---------P------------------------------ 99
           I GF+      ++  LF  M         P                              
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSG 370

Query: 100 -QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
              +  + N L+S +AKAG +  A  LF++M  ++ +++++++  YV+NG A EA  +FK
Sbjct: 371 VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFK 430

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
           ++ +  VE    DA  + ++I AC+ LAAL++G+  H  +++ GL  ++ + ++L+++Y 
Sbjct: 431 KMQACNVEP---DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYA 487

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           KCG  + + QV NMM   D                                V WN+MI+G
Sbjct: 488 KCGRIDLSRQVFNMMPSRD-------------------------------IVSWNTMIAG 516

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-----VHGHA--- 330
           Y  +    EA  LF +M   G   D  T   +LSACS  G +  GK       HG+    
Sbjct: 517 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTP 576

Query: 331 ------CKV------GVID-------------DVIVASALLD---TYSKRGMPSDACKLF 362
                 C V      G +D             DV V  ALL     Y    +     ++ 
Sbjct: 577 RMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMI 636

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHI--------FRTMPNKSLISWN 405
            EL    T     +  +YS+ GR ++A  +        F+  P  S I  N
Sbjct: 637 QELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 165/385 (42%), Gaps = 76/385 (19%)

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG--FAREAVRLFKELNSDLVERLQCDAF 173
           +G L  A  LF+ +P  +   +N +I  Y  +    A + + L++ +   L  R+  + +
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRM---LRHRVAPNNY 126

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
                + AC+ LA    G+ IH H +  GL  D  + ++L+++Y KC     A  +   M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
              D    +A+++GYA+ G                  M++  ++  +S        +  H
Sbjct: 187 PARDLVAWNAMLAGYAHHG------------------MYHHAVAHLLSMQ------MQMH 222

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH---AC-------KVGVIDDVIVAS 343
           ++R N     ASTL ++L   +  G L  G  VH +   AC       K  + D V++ +
Sbjct: 223 RLRPN-----ASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGT 277

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           ALLD Y+K                               CG +  A+ +F  MP ++ ++
Sbjct: 278 ALLDMYAK-------------------------------CGSLLYARRVFDAMPARNEVT 306

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARV 462
           W+++I G        +A  LF  M    L  +   S+AS + ACA++  L +GEQ+ A +
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFI 487
              G+ +D     SL+  Y K G I
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLI 391



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 46/268 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A  L++C +   + +G+QLH    K G+ ++ L   N LL MY + G    A+ LFDEM
Sbjct: 343 IASALRACASLDHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEM 401

Query: 68  PRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMP------------------QKND 103
             ++  S++A++ G+++ G  E      K +Q  NV P                  Q   
Sbjct: 402 AVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGR 461

Query: 104 FSW---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
            S                N LI  +AK G +  +R +FN MP R+ ++WN+MI  Y  +G
Sbjct: 462 CSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 521

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             +EA  LF E+N+        D      ++ AC+    +  GK    H++ +G      
Sbjct: 522 LGKEATALFLEMNN---LGFPPDGVTFICLLSACSHSGLVIEGKHWF-HVMRHGYGLTPR 577

Query: 209 LGS--SLVNLYGKCGDFNSANQVLNMMK 234
           +     +V+L  + G  + A + +  M 
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSMP 605


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/445 (28%), Positives = 208/445 (46%), Gaps = 51/445 (11%)

Query: 51  YMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           Y++CG   DA  LFD +   ++  +W AM+ G+++L   E++ +LF VMP KN  SWN +
Sbjct: 16  YIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTM 75

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I G+ K  E+  A  +F  M  RN ++WN++I   V+ G   EA R F E+        +
Sbjct: 76  IDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMP-------K 128

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D     T++   A    ++  +++   +     + + V  +++V  Y K    + A  +
Sbjct: 129 RDVISWTTMVMGLARSGRVDEARKVFDRMP----ERNVVSWNAMVTGYAKNMRLDEAFDL 184

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M E +    + +I+G+   G++  AR+VF+   + + V W +MI+GY+   E   AL
Sbjct: 185 FERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESAL 244

Query: 290 LLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
            +F +M +  G   +  T  +VL ACS +  L  G+QVH    K    D   VASALL+ 
Sbjct: 245 KVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNM 304

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR--TMPNKSLISWNS 406
           YSK                               CG +  A+ IF    +  + L+ WN 
Sbjct: 305 YSK-------------------------------CGELSIARKIFDDVVISQRDLVLWNG 333

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF---ARVT 463
           MI   + +G  +EA++LF +M  L  + +  S   ++SAC++   ++ G   F    R  
Sbjct: 334 MIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDN 393

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            I L  D      LVD   + G +K
Sbjct: 394 SIQLREDH--HACLVDLCGRAGRLK 416



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 147/310 (47%), Gaps = 62/310 (20%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRR-------------------------------NCF 73
           N ++   ++CG   +A   FDEMP+R                               N  
Sbjct: 104 NAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVV 163

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
           SWNAM+ G+ K    +++  LF  MP++N  SWN +I+GF + GEL  AR +FN+MP +N
Sbjct: 164 SWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKN 223

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            ++W +MI  YV+ G +  A+++F E+  D   R     F+   V+GAC+D+A L  G+Q
Sbjct: 224 VVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFV--NVLGACSDMAGLGEGQQ 281

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           +H  I  +     + + S+L+N+Y KCG+ + A ++       DD  +S           
Sbjct: 282 VHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIF------DDVVIS----------- 324

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                           V+WN MI+ Y  +    EA+ LF  M+  G   +  +   +LSA
Sbjct: 325 ------------QRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSA 372

Query: 314 CSSLGFLEHG 323
           CS  G ++ G
Sbjct: 373 CSHAGLVDEG 382



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 38/309 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MP 68
           +L +C+    +  G+Q+HL  + K +      +A+ LL MY +CG  + A  +FD+  + 
Sbjct: 266 VLGACSDMAGLGEGQQVHL-LISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVIS 324

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTART 124
           +R+   WN MI  +   G   ++++LF  M     + ND S+  L+S  + AG +     
Sbjct: 325 QRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLN 384

Query: 125 LFNDMPRRNAIAWNSMIH-CYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            F+++ R N+I      H C V    R G  +EA    K+L +      +  + I   ++
Sbjct: 385 YFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGT------KASSSIWGGLL 438

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
             C     LE G Q+ +  L      ++     L N+Y     +  A++V   MKE    
Sbjct: 439 AGCNAHGDLEIG-QLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKG-- 495

Query: 240 CLSALISGYANCGKMNDARRVF-----DRTTDTSSVMWN-------SMISGYISNNEDTE 287
                +     C  +    RV      D++   S+++++        M + ++ NN+  +
Sbjct: 496 -----LKKQPGCSWIEVGNRVHVFLARDKSHYQSNLIYSLVHDIHAEMKAEHVPNNDFVD 550

Query: 288 ALLLFHKMR 296
              +FH++R
Sbjct: 551 ERKIFHQLR 559


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 223/518 (43%), Gaps = 105/518 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+ +C +  S+  GK++H H LK       L + N +L MY +CG+  DA   FD M  R
Sbjct: 163 LILACTSIRSLKYGKKIHDHILKSNC-QPDLVLQNHILNMYGKCGSLKDARKAFDTMQLR 221

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-------------------------- 104
           N  SW  MI G+ + G +  ++ ++  M Q   F                          
Sbjct: 222 NVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLH 281

Query: 105 -------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                        + N LIS + + G++  A  +F  +  ++ I+W SMI  + + G+  
Sbjct: 282 GHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEI 341

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+++        Q + FI  +V  AC  L   E+G+QIH      GL  +   G 
Sbjct: 342 EALYLFRDMFRQGF--YQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGC 399

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL ++Y K G   SA +    ++ PD    +A+I+ +++ G +N                
Sbjct: 400 SLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVN---------------- 443

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                          EA+  F +M   G++ D  T  S+L AC S   +  G Q+H +  
Sbjct: 444 ---------------EAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYII 488

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K+G+  +  V ++LL                               T+Y+ C  + DA +
Sbjct: 489 KIGLDKEAAVCNSLL-------------------------------TMYTKCSNLHDAFN 517

Query: 392 IFRTM-PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
           +F+ +  N +L+SWN+++    Q+    E   LF  M   + + D  ++ +++  CA ++
Sbjct: 518 VFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELA 577

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           SLE+G QV       GL  D  +S  L+D Y KCG +K
Sbjct: 578 SLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLK 615



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/529 (24%), Positives = 233/529 (44%), Gaps = 108/529 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
              ++++C     I +G+QLH H +K G  +  L   N L+ MY R G    A  +F  +
Sbjct: 261 FGSIIKACCIAGDIDLGRQLHGHVIKSG-YDHHLIAQNALISMYTRFGQIVHASDVFTMI 319

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------------- 112
             ++  SW +MI GF +LG++ ++L LF  M ++  +  N  I G               
Sbjct: 320 STKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFG 379

Query: 113 -------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                    +AK G L +A   F  +   + ++WN++I  +  +
Sbjct: 380 RQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDS 439

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA+  F ++   +   L  D     +++ AC     +  G QIHS+I+  GLD ++
Sbjct: 440 GDVNEAIYFFCQM---MHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEA 496

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF-DRTTD 266
            + +SL+ +Y KC +                               ++DA  VF D + +
Sbjct: 497 AVCNSLLTMYTKCSN-------------------------------LHDAFNVFKDVSEN 525

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            + V WN+++S  + + +  E   LF  M  +    D  T+ ++L  C+ L  LE G QV
Sbjct: 526 ANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQV 585

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H  + K G++ DV V++ L+D Y+K                               CG +
Sbjct: 586 HCFSVKSGLVVDVSVSNRLIDMYAK-------------------------------CGSL 614

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + A+ +F +  N  ++SW+S+IVG +Q G   EAL+LF  M  L ++ ++ +   V+SAC
Sbjct: 615 KHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSAC 674

Query: 447 ANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           ++I  +E G   +  + I +G+   +   + +VD   + G +   E ++
Sbjct: 675 SHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFI 723



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 149/351 (42%), Gaps = 63/351 (17%)

Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
           NS I+   +    REA+  F     +    +Q ++     +I AC  + +L+YGK+IH H
Sbjct: 125 NSYINLMCKQRHYREALDTFNFHPKN--SSIQLESSTYGNLILACTSIRSLKYGKKIHDH 182

Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
           IL +    D VL + ++N+YGKCG    A +  + M+  +    + +ISGY+  G+ ND 
Sbjct: 183 ILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQEND- 241

Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
                                         A++++ +M ++G   D  T  S++ AC   
Sbjct: 242 ------------------------------AIIMYIQMLQSGYFPDPLTFGSIIKACCIA 271

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G ++ G+Q+HGH  K G    +I  +AL+  Y++ G    A  +F+ +   D I   +MI
Sbjct: 272 GDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMI 331

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           T ++  G   +A ++FR M  +     N  I G                           
Sbjct: 332 TGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFG--------------------------- 364

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              SV SAC ++   E G Q+       GL  +     SL D Y K GF+ 
Sbjct: 365 ---SVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLP 412



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 111/242 (45%), Gaps = 27/242 (11%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  +L +C    S+ VG Q+H   +K G++   + ++NRL+ MY +CG+   A  +F   
Sbjct: 566 ITTILGTCAELASLEVGNQVHCFSVKSGLV-VDVSVSNRLIDMYAKCGSLKHARDVFGST 624

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  SW+++I G+ + G   ++L LF +M     Q N+ ++  ++S  +  G ++   
Sbjct: 625 QNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGW 684

Query: 124 TLFNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
             +N M       P R  ++   M+    R G   EA    K++          D  +  
Sbjct: 685 HFYNTMEIELGIPPTREHVS--CMVDLLARAGCLYEAENFIKKMG------FNPDITMWK 736

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMM 233
           T++ +C     ++  ++   +I    L  D    ++LV   N++   G++    ++ N+M
Sbjct: 737 TLLASCKTHGNVDIAERAAENI----LKLDPSNSAALVLLSNIHASVGNWKEVARLRNLM 792

Query: 234 KE 235
           K+
Sbjct: 793 KQ 794


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 231/482 (47%), Gaps = 50/482 (10%)

Query: 19  HSIHVGKQLHLHFLKKGILNS----TLPIANRLLQMYMRCGNPTDALLLFDEM------P 68
            S  +G +  L F K+   N     T  + N L++ Y   G   +A+LLF  M      P
Sbjct: 72  RSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISP 131

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
            +  F +   +    K   K   +Q+  ++ +    K+ F  N L+  +A+ GEL  AR 
Sbjct: 132 DKYTFPFGLSV--CAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARK 189

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F++M  RN ++W SMI  Y R  FA++AV LF  +  D  E +  ++  +  VI ACA 
Sbjct: 190 VFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRD--EDVIPNSVTMVCVISACAK 247

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L  LE G++++  I  +G+                               E +D  +SAL
Sbjct: 248 LEDLETGEKVYDFIRDSGI-------------------------------EVNDLMISAL 276

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  Y  C  ++ A+R+FD    ++  + N+M S Y+      EAL + + M  +G+  D 
Sbjct: 277 VDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDR 336

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            ++ S +S+CS L  +  GK  HG+  + G      + +AL+D Y K      A ++F  
Sbjct: 337 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 396

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +     +  N+++  Y   G ++ A   F TMP K+++SWN++I  L Q     EA+++F
Sbjct: 397 MSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVF 456

Query: 425 CNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
             M   + + +D  ++ S+ SAC ++ +L+L + ++  +    +  D  + T+LVD + +
Sbjct: 457 HYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSR 516

Query: 484 CG 485
           CG
Sbjct: 517 CG 518



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 224/507 (44%), Gaps = 77/507 (15%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G Q+H   +K       L + N L+  Y  CG    A  +FDEM  RN  SW +MI G+ 
Sbjct: 152 GIQIHGLIIKMDYAKD-LFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYA 210

Query: 84  KLGHKEKSLQLF-------NVMP---------------------------------QKND 103
           +    + ++ LF       +V+P                                 + ND
Sbjct: 211 RREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVND 270

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
              + L+  + K   +  A+ LF++    N    N+M   YVR G  +EA+ +   LN  
Sbjct: 271 LMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGV---LNLM 327

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
           +   ++ D   + + I +C+ L  + +GK  H ++L NG +    + ++L+++Y KC   
Sbjct: 328 MDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQ 387

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
           ++A ++ + M        +++++GY   G+++ A   F+   + + V WN++IS  +  N
Sbjct: 388 DTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQEN 447

Query: 284 EDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
              EA+ +FH M+    +  D  T+ S+ SAC  LG L+  K ++ +  K  +  DV + 
Sbjct: 448 MYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLG 507

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
           + L+D                               ++S CG  E A  IF ++ N+ + 
Sbjct: 508 TTLVD-------------------------------MFSRCGDPESAMSIFNSLTNRDVS 536

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +W + I  ++  G+   A++LF  M +  L+ D       ++AC +   ++ G+++F  +
Sbjct: 537 AWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSM 596

Query: 463 TII-GLDSDQIISTSLVDFYCKCGFIK 488
             + G+  + +    +VD   + G ++
Sbjct: 597 EKLHGVSPEDVHYGCMVDLLGRAGLLE 623



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 152/327 (46%), Gaps = 40/327 (12%)

Query: 70  RNCF-SW----NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
           RN F SW    NA+I+ +MK   ++ + ++F+ M  K   +WN +++G+ + GE+  A  
Sbjct: 364 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWE 423

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
            FN MP +N ++WN++I   V+     EA+ +F  + S   E +  D   + ++  AC  
Sbjct: 424 TFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQ--ECVNVDGVTMMSIASACGH 481

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L AL+  K I+ +I  N +  D  LG++LV+++ +CGD  SA  + N +   D   +SA 
Sbjct: 482 LGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD---VSA- 537

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
                                      W + I           A+ LF++M   G+  D 
Sbjct: 538 ---------------------------WTAAIGAMAMAGNVERAIELFNEMIEQGLKPDG 570

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFS 363
                 L+AC   G ++ GK++     K+ GV  + +    ++D   + G+  +A +L  
Sbjct: 571 VVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIK 630

Query: 364 ELKVY-DTILLNTMITVYSSCGRIEDA 389
           ++    + ++ N+++      G +E A
Sbjct: 631 DMPTEPNDVIWNSLLAACRVQGNVEMA 657


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 227/518 (43%), Gaps = 106/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A LL +C +   +  GKQLH + LK G ++        LL +Y++CG+   A  +F+  
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAG-MSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
            R N   WN M+  + ++    KS ++F  M                             
Sbjct: 307 DRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGE 366

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  KN F  +M +SG     ++K   L  AR +   + +R+ ++W SMI  YV++ 
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           F  EA+  FKE+    V     D   LA+   ACA + A+  G QIH+ + V+G   D  
Sbjct: 427 FCEEALATFKEMQDCGVWP---DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADIS 483

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LVNLY                               A CG+  +A  +F       
Sbjct: 484 IWNTLVNLY-------------------------------ARCGRSEEAFSLFREIDHKD 512

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + WN +ISG+  +    +AL++F KM + G   +  T  S +SA ++L  ++ GKQVHG
Sbjct: 513 EITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHG 572

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   +  VA+AL+  Y K G   DA  +FSE+ + + +  NT+IT   SC     
Sbjct: 573 RAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIIT---SC----- 624

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                  SQ+G  +EALDLF  M +  L+ +  +   V++AC++
Sbjct: 625 -----------------------SQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSH 661

Query: 449 ISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCG 485
           +  +E G   F  ++ + GL+        +VD   + G
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAG 699



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 212/482 (43%), Gaps = 104/482 (21%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------ 96
           I N L+ +Y + G    A  +F E+  R+  SW AM+ G+ + G  +++ +L++      
Sbjct: 80  IGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTA 139

Query: 97  VMPQK---------------------------------NDFSWNMLISGFAKAGELKTAR 123
           V+P                                     F  N LI+ +   G  K A 
Sbjct: 140 VIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAE 199

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F DM   + + +N++I  + + G    A+++F E+    +  L+ D   +A+++ ACA
Sbjct: 200 RVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ---LSGLRPDCVTVASLLAACA 256

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
            +  L+ GKQ+HS++L  G+ FD +   SL++LY KCGD  +A+ + N+           
Sbjct: 257 SVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG---------- 306

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
                             DR   T+ V+WN M+  Y   ++  ++  +F +M+  G+  +
Sbjct: 307 ------------------DR---TNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPN 345

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T   +L  C+  G +E G+Q+H  + K G   D+ V+  L+D YSK            
Sbjct: 346 KFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY----------- 394

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
                              C  ++ A+ I   +  + ++SW SMI G  Q+    EAL  
Sbjct: 395 ------------------RC--LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALAT 434

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  M    +  D   LAS  SACA I ++  G Q+ ARV + G  +D  I  +LV+ Y +
Sbjct: 435 FKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYAR 494

Query: 484 CG 485
           CG
Sbjct: 495 CG 496



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 206/453 (45%), Gaps = 75/453 (16%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           N L+  + +CG+   AL +FDEM     R +C +  +++     +G  +K  QL + +  
Sbjct: 214 NTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL-L 272

Query: 101 KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
           K   S++ +  G     + K G+++TA  +FN   R N + WN M+  Y +     ++  
Sbjct: 273 KAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFE 332

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           +F ++ +  +     + F    ++  C     +E G+QIHS  + NG + D  +   L++
Sbjct: 333 IFGQMQATGIHP---NKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLID 389

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y K    + A ++L M+++ D                                V W SM
Sbjct: 390 MYSKYRCLDKARKILEMLEKRD-------------------------------VVSWTSM 418

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I+GY+ ++   EAL  F +M+  GV  D   LAS  SAC+ +  +  G Q+H      G 
Sbjct: 419 IAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY 478

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             D+ +                                NT++ +Y+ CGR E+A  +FR 
Sbjct: 479 AADISI-------------------------------WNTLVNLYARCGRSEEAFSLFRE 507

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           + +K  I+WN +I G  Q+    +AL +F  M++   + + F+  S ISA AN++ ++ G
Sbjct: 508 IDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQG 567

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +QV  R    G  S+  ++ +L+  Y KCG I+
Sbjct: 568 KQVHGRAVKTGHTSETEVANALISLYGKCGSIE 600



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 187/439 (42%), Gaps = 88/439 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I +G+Q+H   +K G   S + ++  L+ MY +      A  + + + +R
Sbjct: 352 ILRTCTCTGQIELGEQIHSLSIKNG-FESDMYVSGVLIDMYSKYRCLDKARKILEMLEKR 410

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------ 100
           +  SW +MI G+++    E++L  F  M                                
Sbjct: 411 DVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIH 470

Query: 101 --------KNDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     D S WN L++ +A+ G  + A +LF ++  ++ I WN +I  + ++    
Sbjct: 471 ARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYE 530

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+ +F +++       + + F   + I A A+LA ++ GKQ+H   +  G   ++ + +
Sbjct: 531 QALMVFMKMSQ---AGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVAN 587

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L++LYGKCG                                + DA+ +F   +  + V 
Sbjct: 588 ALISLYGKCGS-------------------------------IEDAKMIFSEMSLRNEVS 616

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++I+    +    EAL LF +M++ G+  +  T   VL+ACS +G +E G        
Sbjct: 617 WNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 676

Query: 332 KVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSELKVYDTILLNTMI--TVYSSC---GR 385
            V  ++ +    A ++D   + G    A +   E+     I  N MI  T+ S+C     
Sbjct: 677 NVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM----PITANAMIWRTLLSACKVHKN 732

Query: 386 IE----DAKHIFRTMPNKS 400
           IE     AKH+    P+ S
Sbjct: 733 IEIGELAAKHLLELEPHDS 751



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 125/296 (42%), Gaps = 62/296 (20%)

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           +IH+  +V GL  D ++G+ L++LY K G                               
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNG------------------------------- 92

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
            +  AR+VF   +    V W +M+SGY       EA  L+ +M    V+     L+SVLS
Sbjct: 93  LVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLS 152

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           AC+       G+ +H    K     +  V +AL                           
Sbjct: 153 ACTKGKLFAQGRMIHAQVYKQAFCSETFVGNAL--------------------------- 185

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
               I +Y   G  + A+ +F  M     +++N++I G +Q G    AL +F  M    L
Sbjct: 186 ----IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGL 241

Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           R D  ++AS+++ACA++  L+ G+Q+ + +   G+  D I   SL+D Y KCG I+
Sbjct: 242 RPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 128/311 (41%), Gaps = 74/311 (23%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA    +C    ++  G Q+H      G   + + I N L+ +Y RCG   +A  LF E+
Sbjct: 450 LASAASACAGIKAMRQGLQIHARVYVSG-YAADISIWNTLVNLYARCGRSEEAFSLFREI 508

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             ++  +WN +I GF +    E++L +F  M Q     N F++                 
Sbjct: 509 DHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGK 568

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LIS + K G ++ A+ +F++M  RN ++WN++I    ++G
Sbjct: 569 QVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG 628

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              EA+ LF ++     E L+ +      V+ AC+ +  +E            GL +   
Sbjct: 629 RGLEALDLFDQMKQ---EGLKPNDVTFIGVLAACSHVGLVE-----------EGLSY--- 671

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                         F S + V  +   PD +     I G A  G+++ ARR  D    T+
Sbjct: 672 --------------FKSMSNVYGLNPIPDHYACVVDILGRA--GQLDRARRFVDEMPITA 715

Query: 269 SVM-WNSMISG 278
           + M W +++S 
Sbjct: 716 NAMIWRTLLSA 726



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 21/226 (9%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GKQ+H   +K G  + T  +AN L+ +Y +CG+  DA ++F EM  RN  SWN +I 
Sbjct: 564 IKQGKQVHGRAVKTGHTSET-EVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIIT 622

Query: 81  GFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA 136
              + G   ++L LF+ M Q+    ND ++  +++  +  G ++   + F  M   N   
Sbjct: 623 SCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS--NVYG 680

Query: 137 WNSMIHCYV-------RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
            N +   Y        R G    A R   E+       +  +A I  T++ AC     +E
Sbjct: 681 LNPIPDHYACVVDILGRAGQLDRARRFVDEMP------ITANAMIWRTLLSACKVHKNIE 734

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
            G+    H+L      DS     L N Y   G + + +QV  MMK+
Sbjct: 735 IGELAAKHLL-ELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKD 779



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 61/123 (49%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D ++ N +I +Y+  G +  A+ +F+ + ++  +SW +M+ G +Q G   EA  L+  M+
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMH 136

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +    + L+SV+SAC        G  + A+V      S+  +  +L+  Y   G  K
Sbjct: 137 WTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFK 196

Query: 489 MDE 491
           + E
Sbjct: 197 LAE 199


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 140/539 (25%), Positives = 225/539 (41%), Gaps = 116/539 (21%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           M+  I     +L +C++   + +GK+ H   +K G + S   I   L+ MY++ G+   A
Sbjct: 158 MEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFV-SDFRIGTALVSMYVKGGSMDGA 216

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------ 102
             +FD + +R+  ++N MI G+ K G  EK+ QLF  M Q+                   
Sbjct: 217 RQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTP 276

Query: 103 -DFSWN--------------------MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
              +W                      LI  +   G ++ AR +F+ M  R+ ++W  MI
Sbjct: 277 EALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMI 336

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y  N    +A  LF  +     E +Q D      +I ACA  A L   ++IHS ++  
Sbjct: 337 RGYAENSNIEDAFGLFATMQE---EGIQPDRITYIHIINACASSADLSLAREIHSQVVRA 393

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G   D ++ ++LV++Y K                               CG + DAR+VF
Sbjct: 394 GFGTDLLVDTALVHMYAK-------------------------------CGAIKDARQVF 422

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           D  +    V W++MI  Y+ N    EA   FH M+RN V  D  T  ++L+AC  LG L+
Sbjct: 423 DAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALD 482

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G +++  A K  ++  + V +AL++   K G    A  +F  +   D +  N MI    
Sbjct: 483 LGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIG--- 539

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
                                       G S +G+  EALDLF  M K   R +  +   
Sbjct: 540 ----------------------------GYSLHGNAREALDLFDRMLKERFRPNSVTFVG 571

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVDFYCKCGFIKMDEYYLM 495
           V+SAC+    +E G + F+ +    LD   I+ T      +VD   + G  ++DE  L+
Sbjct: 572 VLSACSRAGFVEEGRRFFSYL----LDGRGIVPTMELYGCMVDLLGRAG--ELDEAELL 624



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 223/522 (42%), Gaps = 105/522 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L Q C       +GKQ+  H ++ G   +   + N L++++  CGN  +A   FD +  
Sbjct: 66  KLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYEL-NTLIKLHSICGNMLEARQTFDSVEN 124

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK---------------------------- 101
           +   +WNA+I G+ +LGH +++  LF  M  +                            
Sbjct: 125 KTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEF 184

Query: 102 ----------NDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                     +DF     L+S + K G +  AR +F+ + +R+   +N MI  Y ++G  
Sbjct: 185 HAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDG 244

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            +A +LF  +     E  + +     +++  C+   AL +GK +H+  +  GL  D  + 
Sbjct: 245 EKAFQLFYRMQQ---EGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA 301

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+ +Y                                 CG +  ARRVFD+      V
Sbjct: 302 TALIRMY-------------------------------MGCGSIEGARRVFDKMKVRDVV 330

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W  MI GY  N+   +A  LF  M+  G+  D  T   +++AC+S   L   +++H   
Sbjct: 331 SWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQV 390

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            + G   D++V +AL+  Y+K                               CG I+DA+
Sbjct: 391 VRAGFGTDLLVDTALVHMYAK-------------------------------CGAIKDAR 419

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F  M  + ++SW++MI    +NG   EA + F  M + ++  D  +  ++++AC ++ 
Sbjct: 420 QVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLG 479

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +L+LG +++ +     L S   +  +L++   K G I+   Y
Sbjct: 480 ALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARY 521



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 37/212 (17%)

Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
           S+ +G +  N+      + H++       D+ T   +   C  L     GKQV  H  + 
Sbjct: 37  SIFTGQVGAND------VLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQS 90

Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
           G                             +L +Y+   LNT+I ++S CG + +A+  F
Sbjct: 91  G----------------------------RQLNIYE---LNTLIKLHSICGNMLEARQTF 119

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
            ++ NK++++WN++I G +Q G   EA  LF  M    +     +   V+ AC++ + L+
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           LG++  A+V  +G  SD  I T+LV  Y K G
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGG 211



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 112/233 (48%), Gaps = 17/233 (7%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    ++ +G +++   +K  ++ S +P+ N L+ M ++ G+   A  +F+ M +R
Sbjct: 471 LLNACGHLGALDLGMEIYTQAIKADLV-SHIPVGNALINMNVKHGSIERARYIFENMVQR 529

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLF 126
           +  +WN MI G+   G+  ++L LF+ M ++    N  ++  ++S  ++AG ++  R  F
Sbjct: 530 DVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFF 589

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + +     I      +  M+    R G   EA  L   +       L+ ++ I +T++ A
Sbjct: 590 SYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMP------LKPNSSIWSTLLAA 643

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           C     L+  ++     L++   +D  +   L ++Y   G + +  +V  +M+
Sbjct: 644 CRIYGNLDVAERAAERCLMSE-PYDGAVYVQLSHMYAAAGMWENVAKVRKVME 695


>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 553

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 218/452 (48%), Gaps = 47/452 (10%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-----RNCFSW 75
           I V  Q+    +    +++T P  N L++ + R   P  A+L+++   +      + +++
Sbjct: 19  IKVFDQVLTQTITTAFIHAT-PTWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTY 77

Query: 76  NAMIEGFMKLGH----KEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
            AM++   ++G     KE    +       + +  N L+  +   G++  AR LF+ MP 
Sbjct: 78  PAMLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPH 137

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
           R+  +WN+++  Y  N  A E + LFK +   + E +  D   +  V  AC  +   E+G
Sbjct: 138 RDLASWNTLLGAY--NDNAVEVLVLFKRM---MYEGIGGDHISMVIVFSACGKIGGTEFG 192

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV-LNMMKEPDDFCLSALISGYAN 250
           K++H +++  G+     L ++L+ +Y KCG+ ++A  + + M    D    + L +GY +
Sbjct: 193 KEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVD 252

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G ++ AR +FD+ +    V WNSMI  Y+      +A+ LF KM    V  D +T+ SV
Sbjct: 253 MGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSV 312

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L+AC+SL  L++G+  H    +     D+ V +AL+D Y+K                   
Sbjct: 313 LAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAK------------------- 353

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG +E+A   F  M ++ + +W + I GL+ +G   +AL LF  M K 
Sbjct: 354 ------------CGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQ 401

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARV 462
            ++ ++ +  SV+ AC+    ++ G  +F R+
Sbjct: 402 GIKPNQATFVSVLMACSRSGLVKEGCLLFKRM 433



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 177/364 (48%), Gaps = 46/364 (12%)

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ-CDAFILATVIGACADLAALEYGKQIH 195
           WN +I  + R+     A+ ++   N  +  R    D +    ++ AC  + +L  GK++H
Sbjct: 41  WNCLIRAFSRSPTPITAILIY---NHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVH 97

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +H+   GLD D  +G++L++LYG                               + G++ 
Sbjct: 98  AHVTKTGLDSDVYVGNALLHLYG-------------------------------STGQVT 126

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           DARR+FD         WN+++  Y  N+   E L+LF +M   G+  D  ++  V SAC 
Sbjct: 127 DARRLFDGMPHRDLASWNTLLGAY--NDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACG 184

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            +G  E GK+VHG+  KVG+   + +++ALL  Y+K G    A  LF E+     ++ +T
Sbjct: 185 KIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHT 244

Query: 376 MI-TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           ++   Y   G I+ A+ IF  M  K L+SWNSMI    +   P +A++LF  M    +  
Sbjct: 245 ILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEP 304

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG--------F 486
           D+ ++ SV++ACA+++ L+ G      +       D  + T+L+D Y KCG        F
Sbjct: 305 DETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTF 364

Query: 487 IKMD 490
            KMD
Sbjct: 365 YKMD 368



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 189/443 (42%), Gaps = 107/443 (24%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    S+  GK++H H  K G L+S + + N LL +Y   G  TDA  LFD MP R
Sbjct: 80  MLKACWRMGSLSKGKEVHAHVTKTG-LDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHR 138

Query: 71  NCFSWNAMIEGF---------------------------------MKLGHKEKSLQLFNV 97
           +  SWN ++  +                                  K+G  E   ++   
Sbjct: 139 DLASWNTLLGAYNDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGY 198

Query: 98  MPQ---KNDFSW-NMLISGFAKAGELKTARTLF--------------------------- 126
           + +   +   S  N L+  + K GE+  A++LF                           
Sbjct: 199 VIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDL 258

Query: 127 -----NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
                + M  ++ ++WNSMIH YV+    ++A+ LF+++ +++VE    D   + +V+ A
Sbjct: 259 ARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKMENEMVEP---DETTMVSVLAA 315

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA LA L+ G+  H  I+ N    D  +G++L+++Y KCG                    
Sbjct: 316 CASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSLE----------------- 358

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
            A+++ Y    KM D+R VF          W + I G  ++    +AL LF +M + G+ 
Sbjct: 359 EAMVTFY----KM-DSRDVFT---------WTTAIEGLANHGHGDKALSLFTEMEKQGIK 404

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDACK 360
            + +T  SVL ACS  G ++ G  +     +   I   I     LLD  S+ G+   A +
Sbjct: 405 PNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEE 464

Query: 361 LFSELKVYDTILLNTMITVYSSC 383
               +   + I+ N   T+ S+C
Sbjct: 465 FIKLMPPKEKIIANK--TLLSAC 485


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 205/455 (45%), Gaps = 74/455 (16%)

Query: 11  LLQSCNTHHSIHV--GKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEM 67
            L  C      HV  G+ LH    +  +L S +P IA+ ++ MY   G P DA   FDE 
Sbjct: 108 FLFKCCARGGAHVLLGRMLHAACFRT-LLPSAVPLIASPIIHMYAELGLPGDARRAFDEA 166

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                                            K+  +W  +ISG AK G L  AR L  
Sbjct: 167 S-------------------------------VKDVVAWTTVISGLAKMGLLDDARRLLA 195

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
             P RN + W  +I  Y R G A EAV  F   NS L + +  D   +  ++ AC  L  
Sbjct: 196 RAPVRNVVTWTGLISGYSRAGRAAEAVDCF---NSMLSDGIAPDEVTVIGMLSACGQLKD 252

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM---KEPDDFCLSAL 244
           L +G  +H  +    +     L  +L+++Y KCGD   A +V + +   + P  +  +A+
Sbjct: 253 LNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPW--NAM 310

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           I GY   G ++ AR +FD+  D   + +NS+I+GYI      EALLLF KMRR+G+  D 
Sbjct: 311 IDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADN 370

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  +L+A +SLG L  G+ +H    +  V  DV + +ALLD Y K             
Sbjct: 371 FTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMK------------- 417

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                             CGR+E+A   F+ M  + + +W++MI GL+ NG    AL+ F
Sbjct: 418 ------------------CGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHF 459

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             M       +  +  +V++AC++   L+ G   F
Sbjct: 460 FWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYF 494



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 8/375 (2%)

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
            L+ A +LF+ MP    +   ++  C+  +      + L++ ++   V     DAF    
Sbjct: 52  HLRYALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPP---DAFTFHF 108

Query: 178 VIGACADLAA-LEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +   CA   A +  G+ +H+      L     ++ S ++++Y + G    A +  +    
Sbjct: 109 LFKCCARGGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASV 168

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
            D    + +ISG A  G ++DARR+  R    + V W  +ISGY       EA+  F+ M
Sbjct: 169 KDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM 228

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGM 354
             +G+  D  T+  +LSAC  L  L  G  +H     K  ++ D +V  AL+D Y+K G 
Sbjct: 229 LSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVV-ALIDMYAKCGD 287

Query: 355 PSDACKLFSEL-KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
              A ++F  L +       N MI  Y   G ++ A+ +F  M +  +I++NS+I G   
Sbjct: 288 TGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIH 347

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
            G   EAL LF  M +  L  D F++  +++A A++ +L  G  + A +    ++ D  +
Sbjct: 348 GGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYL 407

Query: 474 STSLVDFYCKCGFIK 488
            T+L+D Y KCG ++
Sbjct: 408 GTALLDMYMKCGRVE 422


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 245/513 (47%), Gaps = 84/513 (16%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPRRNCFSWNAMIEGF 82
           GK +H + +K G+ + TL   N L+ MY +CG   +DA   F+ +  ++  SWNA+I GF
Sbjct: 99  GKSVHSYVIKSGLESHTLA-GNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGF 157

Query: 83  MKLGHKEKSLQLFNVM---PQKNDFSW--------------------------------- 106
            +    E++ +LF+ M   P + +++                                  
Sbjct: 158 SENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMEL 217

Query: 107 -------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
                  N L+S + + G+++ A  LF +M  R+ ++WN++I  Y  NG   +A+ LF E
Sbjct: 218 VEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSE 277

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYG 218
             S  +E ++ D+  L +V+ ACA +  L+  K IH +I+ + GL  D+ +G++L++ Y 
Sbjct: 278 FIS--LETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYA 335

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           KC    +A Q   M+   D      LIS                         WN+++  
Sbjct: 336 KCNYTQAALQTFLMISRKD------LIS-------------------------WNAILDA 364

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID- 337
           +  +  +T  + L H M R G+  D+ T+ +++   +++  ++  K+ H ++ + G++  
Sbjct: 365 FTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQG 424

Query: 338 --DVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCGRIEDAKHIFR 394
                + + +LD Y+K G    A  +F  L +  + +  N+MI+ Y +    +DA  IF 
Sbjct: 425 DAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFN 484

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
           TM    L +WN M+   ++N  P +AL LF  +    ++ D  ++ S++ ACA+++S+ +
Sbjct: 485 TMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHM 544

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             Q    V I    +D  ++ + +D Y KCG +
Sbjct: 545 LRQCHGYV-IRACFNDVRLNGAFIDMYSKCGSV 576



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 233/515 (45%), Gaps = 82/515 (15%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK++H H L++  L   + + N L+  Y+R G    A  LF  M  R+  SWNA+I G+ 
Sbjct: 204 GKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYA 263

Query: 84  KLGHKEKSLQLFN-----------------VMPQ-----------------------KND 103
             G   K+L+LF+                 V+P                        + D
Sbjct: 264 SNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLRED 323

Query: 104 FS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            S  N L+S +AK    + A   F  + R++ I+WN+++  +  +G     V L   L+ 
Sbjct: 324 TSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNL---LHW 380

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLVNLYGK 219
            L E ++ D+  + T+I   A ++ ++  K+ HS+ +  GL   D    LG+ +++ Y K
Sbjct: 381 MLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAK 440

Query: 220 CGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           CG+   A  +   + E  +    +++ISGY N    +DA  +F+  ++T    WN M+  
Sbjct: 441 CGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRV 500

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           Y  N+   +AL LFH+++  G+  D  T+ S+L AC+ +  +   +Q HG+  +    +D
Sbjct: 501 YAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIR-ACFND 559

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
           V +  A +D YSK                               CG +  A  +F + P 
Sbjct: 560 VRLNGAFIDMYSK-------------------------------CGSVFGAYKLFLSSPQ 588

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
           K L+ + +M+ G + +G   EAL +F  M +L ++ D   + +V+ AC++   ++ G ++
Sbjct: 589 KDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKI 648

Query: 459 FARVTII-GLDSDQIISTSLVDFYCKCGFIKMDEY 492
           F  +  + G          +VD   + G IK D Y
Sbjct: 649 FNSIEKVHGFQPTMEQYACVVDLLARGGRIK-DAY 682



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 186/390 (47%), Gaps = 77/390 (19%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR---EAVRLFKELNSDLV 165
           L++ +AK+G L     LF +M +R+ + WN ++      GF     E +RLF+ ++  +V
Sbjct: 19  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLA--GFQSHEAEVMRLFRAMH--MV 74

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
              + ++  +A V+  CA L   + GK +HS+++ +GL+  ++ G++L+++Y KCG   S
Sbjct: 75  NEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCS 133

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                         DA   F+R      V WN++I+G+  N   
Sbjct: 134 ------------------------------DAYAAFNRIEFKDVVSWNAVIAGFSENKFT 163

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSL----GFLEHGKQVHGHAC-KVGVIDDVI 340
            EA  LFH M +  +  + +T+AS+L  C+SL    G+  +GK+VH H   ++ +++DV 
Sbjct: 164 EEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGY-RYGKEVHCHVLRRMELVEDVS 222

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V ++L+  Y + G    A  LF  +K  D +  N +I  Y+S                  
Sbjct: 223 VINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYAS------------------ 264

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVF 459
                        NG  ++AL+LF     L+ ++ D  +L SV+ ACA++ +L++ + + 
Sbjct: 265 -------------NGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIH 311

Query: 460 ARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
             +    GL  D  +  +L+ FY KC + +
Sbjct: 312 GYIIRHPGLREDTSVGNALLSFYAKCNYTQ 341



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/435 (20%), Positives = 161/435 (37%), Gaps = 110/435 (25%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C   H++ V K +H + ++   L     + N LL  Y +C     AL  F  +
Sbjct: 291 LVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMI 350

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------K 101
            R++  SWNA+++ F + G +   + L + M +                          K
Sbjct: 351 SRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVK 410

Query: 102 NDFSW----------------NMLISGFAKAGELKTARTLF------------------- 126
              S+                N ++  +AK G +K A  +F                   
Sbjct: 411 ETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGY 470

Query: 127 -------------NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
                        N M   +   WN M+  Y  N F  +A+ LF EL     + ++ D  
Sbjct: 471 VNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQG---QGMKPDIV 527

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            + +++ ACA +A++   +Q H +++    + D  L  + +++Y KCG    A ++    
Sbjct: 528 TIMSILPACAHMASVHMLRQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFGAYKLFLSS 586

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
            + D    +A++ G+A  G                                  EAL +F 
Sbjct: 587 PQKDLVMFTAMVGGFAMHGM-------------------------------GEEALRIFS 615

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKR 352
            M   GV  D   + +VL ACS  G ++ G ++     KV G    +   + ++D  ++ 
Sbjct: 616 YMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARG 675

Query: 353 GMPSDACKLFSELKV 367
           G   DA    + + +
Sbjct: 676 GRIKDAYTFVTRMPI 690



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 40/266 (15%)

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS-NNEDTEALLLF 292
           K  D  C   L++ YA  G ++   ++F        V+WN ++SG     + + E + LF
Sbjct: 10  KGYDSLC-KGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLF 68

Query: 293 HKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
             M   N    ++ T+A VL  C+ L   + GK VH +  K G+    +  +AL+  Y+K
Sbjct: 69  RAMHMVNEAKPNSVTIAIVLPVCARLR-EDAGKSVHSYVIKSGLESHTLAGNALISMYAK 127

Query: 352 RGMP-SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
            G+  SDA   F+ ++  D +  N                               ++I G
Sbjct: 128 CGLVCSDAYAAFNRIEFKDVVSWN-------------------------------AVIAG 156

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI---SSLELGEQVFARV-TIIG 466
            S+N    EA  LF  M K  ++ +  ++AS++  CA++   +    G++V   V   + 
Sbjct: 157 FSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRME 216

Query: 467 LDSDQIISTSLVDFYCKCGFIKMDEY 492
           L  D  +  SL+ FY + G ++  E+
Sbjct: 217 LVEDVSVINSLMSFYLRIGQMEKAEF 242


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/518 (25%), Positives = 236/518 (45%), Gaps = 103/518 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L+SC+     + G +      K G  +S   + + L+  Y +CG   +A  +F+ M
Sbjct: 119 LSTALRSCSALREFNHGTRFQALVTKSG-FDSNPVLGSALIDFYSKCGCTQEAYRVFEYM 177

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFS------------------ 105
              +  SW  M+  F++ G   ++LQL++ M Q     N+F+                  
Sbjct: 178 NNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKL 237

Query: 106 -------WNM---------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                  W +         L+  + K   ++ A  +       +   W ++I  + ++  
Sbjct: 238 VHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLK 297

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            REA+  F E+ +  V     + F  + ++ AC+ + AL+ GKQIHS +++ GL+ D  +
Sbjct: 298 FREAITAFHEMETSGVVP---NNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSV 354

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G+SLV++Y KC          NM++                     DA R F      + 
Sbjct: 355 GNSLVDMYMKCS---------NMIE---------------------DAVRAFRGIASPNV 384

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W S+I+G+  +  + E++ +F  M+  GV  ++ TL+++L AC ++  L   +++HG+
Sbjct: 385 ISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGY 444

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             K    +DV+V +AL+D Y                               +  G ++DA
Sbjct: 445 IIKNNADNDVVVGNALVDAY-------------------------------AGLGMVDDA 473

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
            H+   M ++ +I++ S+   ++Q G+   AL++  +MNK D+RMD FSLAS +SA A I
Sbjct: 474 WHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGI 533

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
             +E G+Q+       GL S   +S  LVD Y KCG I
Sbjct: 534 PIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCI 571



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 240/528 (45%), Gaps = 108/528 (20%)

Query: 1   MDTRIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPT 58
           + ++I+Y  L  ++  CN+  S+  G  +H   +K G     + ++N LL +Y +C    
Sbjct: 10  IPSKIEYSLLKDIVSFCNSR-SVRDGICIHSPIIKMG-FQEDMFLSNNLLSLYGKCFGVA 67

Query: 59  DALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNM------ 108
           +A  LFDEMP R+  SW  ++  + K+G+ E++L+LF+ M       N+F+ +       
Sbjct: 68  EARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCS 127

Query: 109 -----------------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                                        LI  ++K G  + A  +F  M   + ++W  
Sbjct: 128 ALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTM 187

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           M+  +V  G   +A++L+  +   +   +  + F    ++ A + L  L YGK +H+H++
Sbjct: 188 MVSSFVEAGSWSQALQLYHRM---IQTGVAPNEFTFVKLLAASSFL-GLNYGKLVHAHLM 243

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
           +  ++ + VL ++LV++Y KC     A +V  +  E D F  +A+ISG+    K      
Sbjct: 244 MWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFR---- 299

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                                      EA+  FH+M  +GV+ +  T + +L+ACSS+  
Sbjct: 300 ---------------------------EAITAFHEMETSGVVPNNFTYSGILNACSSILA 332

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ GKQ+H      G+ +DV V ++L+D Y K       C                    
Sbjct: 333 LDLGKQIHSRVVMAGLENDVSVGNSLVDMYMK-------CS------------------- 366

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
                 IEDA   FR + + ++ISW S+I G S++G   E++ +F  M  + +R + F+L
Sbjct: 367 ----NMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTL 422

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           ++++ AC  I SL    ++   +     D+D ++  +LVD Y   G +
Sbjct: 423 STILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMV 470



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 194/480 (40%), Gaps = 108/480 (22%)

Query: 21  IHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ GK +H H +   I LN  L  A  L+ MY +C +  DA+ +       + F W A+I
Sbjct: 232 LNYGKLVHAHLMMWRIELNLVLKTA--LVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAII 289

Query: 80  EGFMKLGHKEKSLQLFNVMPQ----KNDFSW----------------------------- 106
            GF +     +++  F+ M       N+F++                             
Sbjct: 290 SGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLE 349

Query: 107 ------NMLISGFAKAGEL-KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
                 N L+  + K   + + A   F  +   N I+W S+I  +  +G   E++++F  
Sbjct: 350 NDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGA 409

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +    V   + ++F L+T++GAC  + +L   +++H +I+ N  D D V+G++LV+    
Sbjct: 410 MQGVGV---RPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVD---- 462

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                       YA  G ++DA  V         + + S+ +  
Sbjct: 463 ---------------------------AYAGLGMVDDAWHVTSMMKHRDVITYTSLATRI 495

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
                   AL +   M ++ V  D  +LAS LSA + +  +E GKQ+H ++ K G+   +
Sbjct: 496 NQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWI 555

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V++ L+D Y K                               CG I DA   F  +   
Sbjct: 556 SVSNGLVDLYGK-------------------------------CGCIHDAHRSFLEITEP 584

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             +SWN +I GL+ NG    AL  F +M    +  D+ +   V+ AC++   +++G   F
Sbjct: 585 DAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYF 644



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 177/426 (41%), Gaps = 77/426 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGN-PTDALLLFDEMPR 69
           +L +C++  ++ +GKQ+H   +  G+ N  + + N L+ MYM+C N   DA+  F  +  
Sbjct: 323 ILNACSSILALDLGKQIHSRVVMAGLEND-VSVGNSLVDMYMKCSNMIEDAVRAFRGIAS 381

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW------------------- 106
            N  SW ++I GF + G +E+S+++F  M     + N F+                    
Sbjct: 382 PNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKL 441

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N L+  +A  G +  A  + + M  R+ I + S+     + G  
Sbjct: 442 HGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNH 501

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
             A+ +   +N D V   + D F LA+ + A A +  +E GKQ+H + + +GL     + 
Sbjct: 502 EMALNIITHMNKDDV---RMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVS 558

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           + LV+LYGKC                               G ++DA R F   T+  +V
Sbjct: 559 NGLVDLYGKC-------------------------------GCIHDAHRSFLEITEPDAV 587

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGH 329
            WN +I G  SN   + AL  F  MR  GV  D  T   VL ACS  G ++ G       
Sbjct: 588 SWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSM 647

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIED 388
             K G+   +     L+D   + G   +A  +   +    D ++  T++      G I  
Sbjct: 648 REKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPL 707

Query: 389 AKHIFR 394
            +H+ R
Sbjct: 708 GEHMAR 713



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 32/262 (12%)

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
           + ++ M  + D F  + L+S Y  C  + +AR++FD         W  ++S Y       
Sbjct: 39  SPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHE 98

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           EAL LF  M  +G   +  TL++ L +CS+L    HG +      K G   + ++ SAL+
Sbjct: 99  EALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALI 158

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D YSK                               CG  ++A  +F  M N  ++SW  
Sbjct: 159 DFYSK-------------------------------CGCTQEAYRVFEYMNNGDIVSWTM 187

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
           M+    + GS  +AL L+  M +  +  ++F+   +++A + +  L  G+ V A + +  
Sbjct: 188 MVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWR 246

Query: 467 LDSDQIISTSLVDFYCKCGFIK 488
           ++ + ++ T+LVD YCKC  I+
Sbjct: 247 IELNLVLKTALVDMYCKCQSIE 268



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 15/243 (6%)

Query: 2   DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
           D R+D   LA  L +      +  GKQLH + +K G L S + ++N L+ +Y +CG   D
Sbjct: 515 DVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSG-LGSWISVSNGLVDLYGKCGCIHD 573

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAK 115
           A   F E+   +  SWN +I G    GH   +L  F  M     + +  +  +++   + 
Sbjct: 574 AHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSH 633

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
            G +      F  M  ++ I    + H          A RL + +N       + DA I 
Sbjct: 634 GGLVDMGLDYFQSMREKHGIR-PQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIY 692

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDF---DSVLGSSLVNLYGKCGDFNSANQVLNM 232
            T++GAC     +  G+    H+   GL+    D      L NLY   G      +   M
Sbjct: 693 KTLLGACKLHGNIPLGE----HMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRM 748

Query: 233 MKE 235
           M+E
Sbjct: 749 MRE 751


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 187/397 (47%), Gaps = 75/397 (18%)

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF-AREAVRLFKELNSDL 164
           WN L+S + K G +  A  LF+ MPRR+ +++N+MI   VRN + A + V L+ ++    
Sbjct: 97  WNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKK-- 154

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            E ++ +    A +IGAC  L AL      H+H +  GL  +  +GSSLV+         
Sbjct: 155 -EDVKPNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVD--------- 204

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                 GYA   K+ DA + F+   +   V WN MI G   NN 
Sbjct: 205 ----------------------GYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNS 242

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              A+ +F +M +  V  D  TL S++  CS  G L+HG Q HG A K+G+         
Sbjct: 243 KEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGL--------- 293

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR-IEDAKHIFRTMPNKSLIS 403
                                  ++T + N +IT+YS C + +     IF ++   ++IS
Sbjct: 294 ----------------------AHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIIS 331

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W +MI G  QN    EA+ LF  M +L +R + FS +S++    N+++LE G+Q+ AR+ 
Sbjct: 332 WTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARII 391

Query: 464 IIGLDSDQIISTSLVDFYCKCG--------FIKMDEY 492
                 D  ++ +L+D Y KCG        F+KM ++
Sbjct: 392 KSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKH 428



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 232/520 (44%), Gaps = 82/520 (15%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           +    +++LQ C     +  G  +H + +K  I N  + I N+LL +Y++ G+   A  L
Sbjct: 58  KFHQFSQILQECTDAGDLRTGMSVHTYLVKLNI-NGFILIWNKLLSLYLKFGHIHHAHQL 116

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSL-QLFNVMPQK--------------------- 101
           FD MPRR+  S+N MI   ++  +    L  L++ M ++                     
Sbjct: 117 FDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIA 176

Query: 102 ------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
                             N+F  + L+ G+AK  +L+ A   FN++   + ++WN MI  
Sbjct: 177 LRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDG 236

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
             RN     AVR+F ++   L   ++ D F L ++I  C+    L++G Q H   +  GL
Sbjct: 237 CARNNSKEHAVRMFSQM---LKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGL 293

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             ++ + ++L+ +Y KC +   A+ V                             ++F  
Sbjct: 294 AHETPIYNALITMYSKC-EKGVASPV-----------------------------KIFGS 323

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            ++ + + W +MISG++ N ++ EA+ LF +M R GV E+  + +S+L    +L  LE G
Sbjct: 324 ISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQG 383

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           KQ+H    K     D+ V +AL+D YSK G   DA  +F ++  +D +   TMI  Y   
Sbjct: 384 KQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQH 443

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVG----LSQNGSPIEALDLFCNM-NKLDLRMDKFS 438
           G+ ++A  I   M ++ L+      +G     S  G   E + +F  M    +L+  +  
Sbjct: 444 GKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREH 503

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
            A V+        L   E     +  +G++SD ++  +L+
Sbjct: 504 FACVVDMLGRAGRLNEAENF---IDEMGIESDVLVWETLL 540


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 226/503 (44%), Gaps = 105/503 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE--- 80
           G +LH   L++G+L + +   N L+  Y  CG   DA  +FDEMP R+  SWN+++    
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 81  -------------GFMKLGHKEKSLQLFNVMP---QKNDFSWNMLISG------------ 112
                        G M+ G       L +++P    + D  + + + G            
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVN 256

Query: 113 --------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
                   + K G+L+++  +FN M  +N ++WNS I C+   GF  + + +F+ ++   
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHD 316

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           V      +  L++++ A  DL     GK++H + +   ++ D  + ++L+++Y       
Sbjct: 317 VTP---GSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMY------- 366

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                   A  G    A  +F+     + V WN+MI+    N  
Sbjct: 367 ------------------------AKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGA 402

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
           + EA  L  +M++NG   ++ TL ++L ACS +  ++ GKQ+H  + +  ++ D+ V++A
Sbjct: 403 EAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNA 462

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+D                               VY+ CG++  A++IF     K  +S+
Sbjct: 463 LID-------------------------------VYAKCGQLNLARYIF-DRSEKDGVSY 490

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           N++IVG SQ+    E+L LF  M    +  D  S    +SAC+N+S+ + G+++   +  
Sbjct: 491 NTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVK 550

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
             LDS   ++ SL+D Y K G +
Sbjct: 551 RLLDSHPFLANSLLDVYTKGGML 573



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 229/518 (44%), Gaps = 108/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C T      G  +H   LK G LNS + + N L+ MY + G+   ++ +F+ M
Sbjct: 223 LVSILPACGTERDEGFGLCVHGLVLKFG-LNSVVNLGNALVDMYGKFGDLESSMHVFNGM 281

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----------------PQKNDFSW----- 106
             +N  SWN+ I  F   G  E  L++F +M                P   D  +     
Sbjct: 282 QEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGK 341

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+  +AK G  + A  +F ++  RN ++WN+MI    +NG
Sbjct: 342 ELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNG 401

Query: 149 FAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
              EA RL  E+  +     +C ++F L  ++ AC+ +A+++ GKQIH+  +   L    
Sbjct: 402 AEAEAFRLVIEMQKNG----ECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSL---- 453

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                        D F  +ALI  YA CG++N AR +FDR+ + 
Sbjct: 454 ---------------------------MSDLFVSNALIDVYAKCGQLNLARYIFDRS-EK 485

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V +N++I GY  +    E+L LF +MR  G+  DA +    LSACS+L   + GK++H
Sbjct: 486 DGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIH 545

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G           ++   LLD++                      L N+++ VY+  G ++
Sbjct: 546 G-----------VLVKRLLDSH--------------------PFLANSLLDVYTKGGMLD 574

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A  IF  +  K + SWN+MI+G   +G    A +LF  M    +  D  S  +V+S C+
Sbjct: 575 TASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCS 634

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +   ++ G++ F+++    +   Q+    +VD   + G
Sbjct: 635 HGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAG 672



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/513 (23%), Positives = 216/513 (42%), Gaps = 110/513 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEGF 82
           ++ H   L  G L ++ P+A  LL  Y    +   A L+    P   R+ F WN++    
Sbjct: 31  RRAHAASLVSGALTASFPLAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRAL 90

Query: 83  MKLGHKEKSLQLFNVM---------------------------PQKND------------ 103
                  ++L+++N M                           P K              
Sbjct: 91  ASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHAAALRRGLL 150

Query: 104 ----FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
               F+ N L++ +A  G    AR +F++MP R+ ++WNS++   + NG   +A R    
Sbjct: 151 LADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVG 210

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +   +   +  +   L +++ AC       +G  +H  +L  GL+    LG++LV++YGK
Sbjct: 211 M---MRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGK 267

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
            GD  S+  V                               F+   + + V WNS I  +
Sbjct: 268 FGDLESSMHV-------------------------------FNGMQEKNEVSWNSAIGCF 296

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
                  + L +F  M  + V   + TL+S+L A   LG+   GK++HG++ +  V  D+
Sbjct: 297 AHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDI 356

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            +A                               NT++ +Y+  G  E A  IF  +  +
Sbjct: 357 FIA-------------------------------NTLMDMYAKFGCSEKASAIFENIEVR 385

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +++SWN+MI  L+QNG+  EA  L   M K     + F+L +++ AC+ ++S+++G+Q+ 
Sbjct: 386 NVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIH 445

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           A      L SD  +S +L+D Y KCG + +  Y
Sbjct: 446 AWSIRRSLMSDLFVSNALIDVYAKCGQLNLARY 478



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 185/425 (43%), Gaps = 82/425 (19%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI- 79
            H+GK+LH + +++ +  S + IAN L+ MY + G    A  +F+ +  RN  SWNAMI 
Sbjct: 337 FHLGKELHGYSIRRAV-ESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIA 395

Query: 80  ---------EGF------MKLGHKEKSLQLFNVMPQ----------KNDFSW-------- 106
                    E F       K G    S  L N++P           K   +W        
Sbjct: 396 NLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMS 455

Query: 107 -----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                N LI  +AK G+L  AR +F D   ++ +++N++I  Y ++    E++ LF+++ 
Sbjct: 456 DLFVSNALIDVYAKCGQLNLARYIF-DRSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMR 514

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
              +E    DA      + AC++L+A + GK+IH  ++   LD    L +SL+++Y K G
Sbjct: 515 LAGIEH---DAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGG 571

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
             ++A+                               ++F+R T      WN+MI GY  
Sbjct: 572 MLDTAS-------------------------------KIFNRITQKDVASWNTMILGYGM 600

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           + +   A  LF  M+ +G+  D  +  +VLS CS  G ++ GK+         +    + 
Sbjct: 601 HGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMH 660

Query: 342 ASALLDTYSKRGMPSDACKLFSELK------VYDTILLNTMITVYSSCGRIEDAKHIFRT 395
            + ++D   + G  S++ ++   +       V+  +L +  I       R+  A+H+F  
Sbjct: 661 YACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLA-AEHLFEL 719

Query: 396 MPNKS 400
            P  S
Sbjct: 720 KPENS 724



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 107/231 (46%), Gaps = 16/231 (6%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+   +   GK++H   +K+ +L+S   +AN LL +Y + G    A  +F+ + +++
Sbjct: 529 LSACSNLSAFKQGKEIHGVLVKR-LLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKD 587

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN MI G+   G  + + +LF++M     + +  S+  ++S  +  G +   +  F+
Sbjct: 588 VASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFS 647

Query: 128 DMPRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            M  +N         C V    R G   E+  + + +        + ++ +   ++G+C 
Sbjct: 648 QMIAQNIKPQQMHYACMVDLLGRAGQLSESAEIIRNMP------FRANSDVWGALLGSCR 701

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
               +E  +    H+     + +S   + L N+Y + G +N AN V  +MK
Sbjct: 702 IHGDIELARLAAEHLFELKPE-NSGYYTLLRNMYSESGMWNEANGVKKLMK 751


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 225/508 (44%), Gaps = 111/508 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           VG+++H   +K G L +   I   LL MY   G  +DA  +FDE+  R+  SW++++  +
Sbjct: 120 VGRKVHGRIVKTG-LGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACY 178

Query: 83  MKLGHKEKSLQLFNVMPQKN--------------------------------------DF 104
           ++ G   + L++   M  +                                       D 
Sbjct: 179 VENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDA 238

Query: 105 SW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
           S  N LI  + +   L+ A+ +F  +   +   W SMI    +NG   EA+  FK++   
Sbjct: 239 SLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQES 298

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHIL---VNGLDFDSVLGSSLVNLYGKC 220
            VE    +A  + +V+  CA L  L+ GK +H  IL   ++G D D  LG +L++ Y   
Sbjct: 299 EVE---VNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLD--LGPALMDFY--- 350

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                       A C K++   ++     ++S V WN++IS Y 
Sbjct: 351 ----------------------------AACWKISSCEKLLCLIGNSSVVSWNTLISIYA 382

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
               + EA++LF  M   G++ D+ +LAS +SAC+    +  G+Q+HGH  K G  D+ +
Sbjct: 383 REGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADEFV 442

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
                                            N+++ +YS CG ++ A  IF  +  KS
Sbjct: 443 --------------------------------QNSLMDMYSKCGFVDLAYTIFDKIWEKS 470

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           +++WN MI G SQNG  +EAL LF  M    + +++ +  S I AC+N   L  G+ +  
Sbjct: 471 IVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHH 530

Query: 461 RVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ + G+  D  I T+LVD Y KCG +K
Sbjct: 531 KLVVSGVQKDLYIDTALVDMYAKCGDLK 558



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/523 (25%), Positives = 231/523 (44%), Gaps = 115/523 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L +SC+T  S+    QLH H +  G+ +  L  + +LL+ Y R G+   + L+F+  P  
Sbjct: 7   LFRSCSTLRSL---SQLHAHLVVTGLHSDPLA-STKLLESYARMGSLHSSRLVFETHPSP 62

Query: 71  N---------CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG--------- 112
           +         C+ W+ + +  + L H    +Q  + + Q   F +  +I           
Sbjct: 63  DSFMFGVLIKCYLWHHLFDQVVSLYHHH--IQKGSRLTQNCTFLYPSVIKAISVVGGLVV 120

Query: 113 --------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                                     + + G L  AR +F+++  R+ ++W+S++ CYV 
Sbjct: 121 GRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVE 180

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NG  RE + + + + S   E +  D+  + +V  AC  +  L   K +H +++   +  D
Sbjct: 181 NGRPREGLEMLRWMVS---EGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGD 237

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
           + L +SL+ +YG+C                                 +  A+ +F+  +D
Sbjct: 238 ASLRNSLIVMYGQCS-------------------------------YLRGAKGMFESVSD 266

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            S+  W SMIS    N    EA+  F KM+ + V  +A T+ SVL  C+ LG+L+ GK V
Sbjct: 267 PSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSV 326

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H   C +                           L  E+   D  L   ++  Y++C +I
Sbjct: 327 H---CFI---------------------------LRREMDGADLDLGPALMDFYAACWKI 356

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
              + +   + N S++SWN++I   ++ G   EA+ LF  M +  L  D FSLAS ISAC
Sbjct: 357 SSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISAC 416

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           A  SS+  G+Q+   VT  G  +D+ +  SL+D Y KCGF+ +
Sbjct: 417 AGASSVRFGQQIHGHVTKRGF-ADEFVQNSLMDMYSKCGFVDL 458



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/515 (23%), Positives = 219/515 (42%), Gaps = 107/515 (20%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C     + + K +H + ++K +      + N L+ MY +C     A  +F+ +   + 
Sbjct: 211 EACGKVGCLRLAKSVHGYVIRKEMAGDA-SLRNSLIVMYGQCSYLRGAKGMFESVSDPST 269

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFND 128
             W +MI    + G  E+++  F  M +     N  +   ++   A+ G LK  +++   
Sbjct: 270 ACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCF 329

Query: 129 MPRR------------------------------------NAIAWNSMIHCYVRNGFARE 152
           + RR                                    + ++WN++I  Y R G   E
Sbjct: 330 ILRREMDGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEE 389

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF  +   L + L  D+F LA+ I ACA  +++ +G+QIH H+   G          
Sbjct: 390 AMVLFVCM---LEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGF--------- 437

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                   D+F  ++L+  Y+ CG ++ A  +FD+  + S V W
Sbjct: 438 -----------------------ADEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTW 474

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N MI G+  N    EAL LF +M  N +  +  T  S + ACS+ G+L  GK +H     
Sbjct: 475 NCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVV 534

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
            GV  D+ + +AL+D Y+K                               CG ++ A+ +
Sbjct: 535 SGVQKDLYIDTALVDMYAK-------------------------------CGDLKTAQGV 563

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F +MP KS++SW++MI     +G    A  LF  M +  ++ ++ +  +++SAC +  S+
Sbjct: 564 FNSMPEKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSV 623

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           E G+  F  +   G+  +     S+VD   + G I
Sbjct: 624 EEGKFYFNSMRDYGIVPNAEHFASIVDLLSRAGDI 658



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 139/305 (45%), Gaps = 50/305 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  + +C    S+  G+Q+H H  K+G  +    + N L+ MY +CG    A  +FD++
Sbjct: 409 LASSISACAGASSVRFGQQIHGHVTKRGFADEF--VQNSLMDMYSKCGFVDLAYTIFDKI 466

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----------------------------- 98
             ++  +WN MI GF + G   ++L+LF+ M                             
Sbjct: 467 WEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGK 526

Query: 99  ----------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      QK+ +    L+  +AK G+LKTA+ +FN MP ++ ++W++MI  Y  +G
Sbjct: 527 WIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIHG 586

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A  LF ++   +   ++ +      ++ AC    ++E GK   + +   G+  ++ 
Sbjct: 587 QITAATTLFTKM---VESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGIVPNAE 643

Query: 209 LGSSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISGYANCGKMNDARRVFD----- 262
             +S+V+L  + GD + A +++ +  +  D     AL++G    G+M+    +       
Sbjct: 644 HFASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMDLIHNIHKELREI 703

Query: 263 RTTDT 267
           RT DT
Sbjct: 704 RTNDT 708



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 100/234 (42%), Gaps = 22/234 (9%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +Q+C+    +  GK +H   +  G+    L I   L+ MY +CG+   A  +F+ MP ++
Sbjct: 513 IQACSNSGYLLKGKWIHHKLVVSGV-QKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKS 571

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFN 127
             SW+AMI  +   G    +  LF  M +     N+ ++  ++S    AG ++  +  FN
Sbjct: 572 VVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFN 631

Query: 128 DMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            M       NA  + S++    R G    A  + K     +      DA I   ++  C 
Sbjct: 632 SMRDYGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHI------DASIWGALLNGCR 685

Query: 184 DLAALEYGKQIHS---HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
               ++    IH     I  N   + ++L     N+Y + G++  + +V + M+
Sbjct: 686 IHGRMDLIHNIHKELREIRTNDTGYYTLLS----NIYAEGGNWYESRKVRSRME 735


>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 692

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 220/518 (42%), Gaps = 114/518 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+SC T   +   ++LH   L  G       +A +L+  Y R G    AL + D MP RN
Sbjct: 49  LRSCPT---LAEARRLHAALLVGGHHRRGAVLAAQLVHAYARLGEAGRALSVLDGMPMRN 105

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISG-------------- 112
            F+WNA I+G +  G   ++L+ +  M +      + F++  +I                
Sbjct: 106 SFAWNAAIKGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACAALGVVEQGRMVR 165

Query: 113 -------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                                    FAK G L  AR++F  M  R+  AW +MI   V  
Sbjct: 166 ENVEADVVRGVVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERDLAAWTAMIGGAVHA 225

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   +A+ LF  + S   E    D+ I+ATVI AC     L  G  +H   +        
Sbjct: 226 GDWLDAMSLFSRMRS---EGFLADSVIIATVIPACGRAKELRTGMVLHGCAV-------- 274

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTD 266
                      +CG               DD C+S AL+  Y  CG +  A RVF     
Sbjct: 275 -----------RCG-------------VGDDTCVSNALVDMYCKCGCLGMADRVFWSIGF 310

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W+++I+GY  N +D  ++ LF +M   G+  +++T+AS+L + S +    HGK++
Sbjct: 311 KDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEI 370

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG + + G      + SA +D YS++G                                I
Sbjct: 371 HGFSLRNGFDQSKFLGSAFIDFYSRQG-------------------------------SI 399

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            +A+ +   MP + L+ WNSM+ G + NG+   AL  F  + K+  R D  ++ SV+  C
Sbjct: 400 REAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSVLPVC 459

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            + S L  G+++ A V    + S   +S +L+D YCKC
Sbjct: 460 NHHSRLIQGKELHAYVVRHYMSSVCSVSNALIDMYCKC 497



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 169/386 (43%), Gaps = 60/386 (15%)

Query: 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168
           L+  +A+ GE   A ++ + MP RN+ AWN+ I   V +G   EA+  +  +  D    +
Sbjct: 81  LVHAYARLGEAGRALSVLDGMPMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRD--GSV 138

Query: 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228
             D F    VI ACA L  +E G+ +  ++     + D V G                  
Sbjct: 139 AADGFTYPPVIKACAALGVVEQGRMVRENV-----EADVVRG------------------ 175

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
               +  P  F   AL+  +A CG + +AR VF+   +     W +MI G +   +  +A
Sbjct: 176 ----VVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERDLAAWTAMIGGAVHAGDWLDA 231

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           + LF +MR  G L D+  +A+V+ AC     L  G  +HG A + GV DD  V++AL+D 
Sbjct: 232 MSLFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHGCAVRCGVGDDTCVSNALVDM 291

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G    A ++F  +   D +  +T+I                               
Sbjct: 292 YCKCGCLGMADRVFWSIGFKDVVSWSTLIA------------------------------ 321

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            G SQNG    +++LF  M    L+ +  ++AS++ + + +     G+++       G D
Sbjct: 322 -GYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFD 380

Query: 469 SDQIISTSLVDFYCKCGFIKMDEYYL 494
             + + ++ +DFY + G I+  E  L
Sbjct: 381 QSKFLGSAFIDFYSRQGSIREAEIVL 406



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 193/465 (41%), Gaps = 104/465 (22%)

Query: 34  KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           +G++  ++ +   L+ M+ +CG   +A  +F+ M  R+  +W AMI G +  G    ++ 
Sbjct: 174 RGVVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERDLAAWTAMIGGAVHAGDWLDAMS 233

Query: 94  LFN----------------VMP---QKNDFSWNMLISG--------------------FA 114
           LF+                V+P   +  +    M++ G                    + 
Sbjct: 234 LFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHGCAVRCGVGDDTCVSNALVDMYC 293

Query: 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174
           K G L  A  +F  +  ++ ++W+++I  Y +NG    +V LF E+   +   L+ ++  
Sbjct: 294 KCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLFTEM---VTAGLKPNSNT 350

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           +A+++ + +++    +GK+IH   L NG D    LGS+ ++ Y + G             
Sbjct: 351 MASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSRQG------------- 397

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
                              + +A  V +       V+WNSM++GY  N     AL  F  
Sbjct: 398 ------------------SIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRA 439

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           +++ G   D  T+ SVL  C+    L  GK++H                     Y  R  
Sbjct: 440 LQKVGFRPDHVTVVSVLPVCNHHSRLIQGKELH--------------------AYVVRHY 479

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
            S  C +            N +I +Y  C  +E  K IF+ + ++   ++N++I    ++
Sbjct: 480 MSSVCSVS-----------NALIDMYCKCCCLEKGKEIFQLVTDRDTATYNTLISSFGKH 528

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           G   EA+ LF  M +  +  DK +  +++S+C++   +E G   +
Sbjct: 529 GHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFY 573



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/444 (21%), Positives = 186/444 (41%), Gaps = 96/444 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A ++ +C     +  G  LH   ++ G+ + T  ++N L+ MY +CG    A  +F  +
Sbjct: 250 IATVIPACGRAKELRTGMVLHGCAVRCGVGDDTC-VSNALVDMYCKCGCLGMADRVFWSI 308

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKN------------------- 102
             ++  SW+ +I G+ + G    S+ LF  M      P  N                   
Sbjct: 309 GFKDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGK 368

Query: 103 --------------DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          F  +  I  +++ G ++ A  +   MP+R+ + WNSM+  Y  NG
Sbjct: 369 EIHGFSLRNGFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKRDLVIWNSMVAGYAVNG 428

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A+  F+ L        + D   + +V+  C   + L  GK++H++++ + +     
Sbjct: 429 NTDSALCAFRALQK---VGFRPDHVTVVSVLPVCNHHSRLIQGKELHAYVVRHYMSSVCS 485

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+++Y KC                   CL                + +F   TD  
Sbjct: 486 VSNALIDMYCKC------------------CCL-------------EKGKEIFQLVTDRD 514

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +  +N++IS +  +  + EA++LF  M+R+G+  D  T  ++LS+CS  G +E G   + 
Sbjct: 515 TATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFYD 574

Query: 329 HACKVGVIDDVIVA------SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
                 ++ D  ++      S ++D YS+ G   DA K  S L+  D   ++ +  +  +
Sbjct: 575 I-----MLQDYNISPGKEHYSCVVDLYSRSGKLDDAWKFVSSLQ--DEAEIDVLGCLLGA 627

Query: 383 CGRIED--------AKHIFRTMPN 398
           C R+ +        AK IF   P+
Sbjct: 628 C-RVHNRMDIAELVAKRIFEQNPS 650


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 191/377 (50%), Gaps = 39/377 (10%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+  + K G +  A  LF++MP R+ ++W S++  + +    R  + +   + +   +
Sbjct: 42  NTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTH--D 99

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            LQ D F+ A ++ AC+ L  L  GKQ+H+  +++    D V+ SSL+++Y KCG  + A
Sbjct: 100 GLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEA 159

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V + +   +    +++ISGYA  G+  +A  +F +    +   W ++ISG I +    
Sbjct: 160 RAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGI 219

Query: 287 EALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            +  LF++MRR G+ + D   L+SV+  C++L  LE GKQ+HG    +G    + +++AL
Sbjct: 220 YSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNAL 279

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K                               C  I  AK IF  MP K +ISW 
Sbjct: 280 VDMYAK-------------------------------CSDILAAKDIFYRMPRKDVISWT 308

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           S+IVG +Q+G   EAL L+  M    ++ ++ +   ++ AC++   +  G ++F  +T  
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT-- 366

Query: 466 GLDSDQIISTSLVDFYC 482
              +D  I+ SL  + C
Sbjct: 367 ---TDYSINPSLQHYTC 380



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 158/319 (49%), Gaps = 37/319 (11%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA   +     ++HS I+  G D  S+L ++L+++YGKC                     
Sbjct: 13  CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKC--------------------- 51

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGV 300
                     G +  A ++FD   +   V W S+++ +         L + + M   +G+
Sbjct: 52  ----------GLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGL 101

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D    A ++ ACSSLG+L  GKQVH         DD +V S+L+D Y+K G P +A  
Sbjct: 102 QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARA 161

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F  +   +++   +MI+ Y+  GR  +A  +F   P ++L SW ++I GL Q+G  I +
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYS 221

Query: 421 LDLFCNMNK--LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
             LF  M +  +D+ +D   L+SV+  CAN++ LELG+Q+   V  +G +S   IS +LV
Sbjct: 222 FSLFNEMRREGIDI-VDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALV 280

Query: 479 DFYCKCGFI--KMDEYYLM 495
           D Y KC  I    D +Y M
Sbjct: 281 DMYAKCSDILAAKDIFYRM 299



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 193/455 (42%), Gaps = 129/455 (28%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++++C++   + +GKQ+H  F+     +  + + + L+ MY +CG P +A  +FD +
Sbjct: 108 FACIVRACSSLGYLRLGKQVHARFMLSXFCDDEV-VKSSLIDMYTKCGQPDEARAVFDSI 166

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             +N  SW +MI G+ + G K +++ LF   P +N FSW  LISG  ++G    + +LFN
Sbjct: 167 LFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFN 226

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M RR  I                           D+V     D  +L++V+G CA+LA 
Sbjct: 227 EM-RREGI---------------------------DIV-----DPLVLSSVVGGCANLAL 253

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE GKQIH  ++  G +    + ++LV++Y KC D  +A  +   M   D    +++I G
Sbjct: 254 LELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVG 313

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A  GK  +A  ++D            M+   I  NE                     T 
Sbjct: 314 TAQHGKAEEALTLYDE-----------MVLSRIKPNE--------------------VTF 342

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             +L ACS  G +  G++                                          
Sbjct: 343 VGLLYACSHAGLVSRGRE------------------------------------------ 360

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
               L  +M T YS                N SL  +  ++  LS++G   EA +L   +
Sbjct: 361 ----LFRSMTTDYSI---------------NPSLQHYTCLLDLLSRSGHLDEAENL---L 398

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +K+  + D+ + AS++SAC   ++LE+G ++  RV
Sbjct: 399 DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRV 433


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 229/515 (44%), Gaps = 108/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+      S+   KQLH H +  G+L  ++ I + L+  Y  CG   +A  LFDE+ +R
Sbjct: 27  LLKHYGAAQSLTSTKQLHAHLITSGLL--SIDIRSVLVATYAHCGYVHNARKLFDELRQR 84

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND--------------------------- 103
               +N MI+ ++  G   +++++F  M    D                           
Sbjct: 85  GTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVL 144

Query: 104 -------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                        F  N L++ +   GE++ AR +F+ M  ++ ++WN+MI+ Y +NGFA
Sbjct: 145 HGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFA 204

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
             A+ +F ++    VE    D   + +V+ AC  L  LE G+++H      GL  + VLG
Sbjct: 205 NTALVVFNQMVDSGVE---IDGASVVSVLPACGYLKELEVGRRVH------GLVEEKVLG 255

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
             +V+                          +AL+  YA CG M++AR VFD   +   V
Sbjct: 256 KKIVS--------------------------NALVDMYAKCGSMDEARLVFDNMVERDVV 289

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W SMI+GYI N +   AL LF  M+  G+  ++ T+A +L AC+SL  L+ G+ +HG  
Sbjct: 290 SWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWV 349

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K  +  +V V ++L+D Y+K                               C  +  + 
Sbjct: 350 MKQRLYSEVAVETSLIDMYAK-------------------------------CNCLGLSF 378

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +F     K  + WN+++ G   N    EA+ LF  M    + ++  +  S++ A   ++
Sbjct: 379 SVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILA 438

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            L+    + + +   G  S+  ++TSL+D Y KCG
Sbjct: 439 DLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCG 473



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 140/529 (26%), Positives = 234/529 (44%), Gaps = 119/529 (22%)

Query: 11  LLQSCNTHHSIHVGKQLH-LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           ++++C+    +  G+ LH L  + K    S L + N LL MYM CG   +A  +FD M  
Sbjct: 128 VIKACSELLLVEYGRVLHGLTLVSK--FGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKE 185

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFN----------------VMPQ------------- 100
           ++  SWN MI G+ K G    +L +FN                V+P              
Sbjct: 186 KSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRV 245

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L+  +AK G +  AR +F++M  R+ ++W SMI+ Y+ NG A+
Sbjct: 246 HGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAK 305

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ LFK +    +E L+ ++  +A ++ ACA L  L+ G+ +H  ++   L  +  + +
Sbjct: 306 SALSLFKIMQ---IEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVET 362

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           SL+++Y KC                   CL    S             VF RT+   +V 
Sbjct: 363 SLIDMYAKCN------------------CLGLSFS-------------VFTRTSRKKTVP 391

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+++SG + N   TEA+ LF KM   GV  +A+T  S+L A   L  L+    ++ +  
Sbjct: 392 WNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLM 451

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G + ++ VA++L+D YSK                               CG +E A  
Sbjct: 452 RSGFVSNIQVATSLIDIYSK-------------------------------CGSLESAHK 480

Query: 392 IFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           IF T+P   + +  W+ +I G   +G    A+ LF  M +  ++ +  +  SV+ +C++ 
Sbjct: 481 IFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHA 540

Query: 450 SSLELGEQVFARVTIIGLDSDQIIS-----TSLVDFYCKCGFIKMDEYY 493
             ++ G  +F  +    L   Q I      T +VD   + G  +MDE Y
Sbjct: 541 GMVDDGLYLFKFM----LKDHQTIPNDDHYTCMVDLLGRAG--RMDEAY 583



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 39/257 (15%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGV 300
           S L++ YA+CG +++AR++FD      ++++N MI  YI+  +  EA+ +F +M      
Sbjct: 59  SVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDC 118

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D  T   V+ ACS L  +E+G+ +HG                 L   SK G       
Sbjct: 119 CPDNYTYPFVIKACSELLLVEYGRVLHG-----------------LTLVSKFG-----SH 156

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF         +LN+++ +Y +CG +E+A+ +F  M  KS++SWN+MI G  +NG    A
Sbjct: 157 LF---------VLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTA 207

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLV 478
           L +F  M    + +D  S+ SV+ AC  +  LE+G +V   V   ++G    +I+S +LV
Sbjct: 208 LVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLG---KKIVSNALV 264

Query: 479 DFYCKCGFIKMDEYYLM 495
           D Y KCG   MDE  L+
Sbjct: 265 DMYAKCG--SMDEARLV 279



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 31/169 (18%)

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L   KQ+H H    G++  + + S L+ TY+  G   +A KLF EL+   T+L N MI +
Sbjct: 37  LTSTKQLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKM 95

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           Y + G   +A  +F  M               S++  P                 D ++ 
Sbjct: 96  YIAKGDYFEAMKVFLEMLG-------------SKDCCP-----------------DNYTY 125

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
             VI AC+ +  +E G  +     +    S   +  SL+  Y  CG ++
Sbjct: 126 PFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVE 174


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 227/520 (43%), Gaps = 105/520 (20%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           AR LQ C        G+ +H   +++G +       AN LL  Y + G    A  LFD M
Sbjct: 49  ARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGM 108

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P RN  S+  +++G+   G  E++L+LF  + +                           
Sbjct: 109 PERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLAC 168

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                       +N F    LI  ++  G +  AR +F+ +  ++A+ W +M+ CY  N 
Sbjct: 169 GIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSEND 228

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A+  F ++    +   + + F+L + + A   L++   GK IH             
Sbjct: 229 IPEYALNTFSKMR---MTGFKPNPFVLTSALKAAVCLSSALLGKGIH------------- 272

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
            G S+  LY                 + +     AL+  YA CG + DA  +F+      
Sbjct: 273 -GCSVKTLY-----------------DTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDD 314

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            ++W+ +IS Y  + ++ +A  +F +M R+ V+ +  +L+ VL AC+++ FLE G+Q+H 
Sbjct: 315 VILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHN 374

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K+G   ++ V +AL+D Y+K     ++ ++FS L+  + +  NT+I  Y   G  ED
Sbjct: 375 LAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAED 434

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A  +F  M    ++S                                + + +SV+ ACAN
Sbjct: 435 ALSVFHEMRAAHMLS-------------------------------TQVTFSSVLRACAN 463

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            SS++   Q+ + +     ++D I+  SL+D Y KCGFI+
Sbjct: 464 TSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIR 503



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 196/479 (40%), Gaps = 109/479 (22%)

Query: 43  IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--- 99
           +   L+  Y  CG    A  +FD +  ++  +W AM+  + +    E +L  F+ M    
Sbjct: 185 VGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTG 244

Query: 100 -QKNDFSWN-----------------------------------MLISGFAKAGELKTAR 123
            + N F                                       L+  +AK G+++ A 
Sbjct: 245 FKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAH 304

Query: 124 TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183
            +F  +P  + I W+ +I  Y ++    +A  +F  +    V     + F L+ V+ ACA
Sbjct: 305 AIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVP---NEFSLSGVLQACA 361

Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
           ++A LE G+QIH                               N  + +  E + F  +A
Sbjct: 362 NIAFLELGEQIH-------------------------------NLAIKLGYESELFVGNA 390

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+  YA C  M ++  +F    D + V WN++I GY  +    +AL +FH+MR   +L  
Sbjct: 391 LMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLST 450

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
             T +SVL AC++   ++H  Q+H    K    +D IV ++L+DTY+K G   DA K+F 
Sbjct: 451 QVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFE 510

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +   D +  N++I+ Y+  GR  +                               AL+L
Sbjct: 511 SIVECDVVSWNSIISAYALHGRATN-------------------------------ALEL 539

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           F  MNK D++ +  +  S++S C +   +  G  +F  + +     D  I  S+  + C
Sbjct: 540 FDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMM-----DHRIKPSMEHYTC 593



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 151/317 (47%), Gaps = 49/317 (15%)

Query: 23  VGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           +GK +H   +K   L  T P +   LL MY +CG+  DA  +F+ +P  +   W+ +I  
Sbjct: 267 LGKGIHGCSVKT--LYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISR 324

Query: 82  FMKLGHKEKSLQLFNVMPQ----KNDFSW------------------------------- 106
           + +    E++ ++F  M +     N+FS                                
Sbjct: 325 YAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESE 384

Query: 107 ----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
               N L+  +AK   ++ +  +F+ +   N ++WN++I  Y ++GFA +A+ +F E+ +
Sbjct: 385 LFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRA 444

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
             +   Q      ++V+ ACA+ +++++  QIHS I  +  + D+++ +SL++ Y KCG 
Sbjct: 445 AHMLSTQ---VTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGF 501

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISG 278
              A +V   + E D    +++IS YA  G+  +A  +FDR   +    + V + S++S 
Sbjct: 502 IRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSV 561

Query: 279 YISNNEDTEALLLFHKM 295
             S     + L LF+ M
Sbjct: 562 CGSTGLVNQGLWLFNSM 578



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 137/346 (39%), Gaps = 67/346 (19%)

Query: 146 RNGFAREAVR-LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-- 202
           RN  A EA++ L  EL S  + +L  D++  A  +  C        G+ +H+ ++  G  
Sbjct: 20  RNLAANEALQWLDDELASLALPKL--DSYACARFLQRCIARGDARAGRAVHARVVQRGGV 77

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
              D+   + L+N Y K G   +A ++ + M E +      L+ GYA  G          
Sbjct: 78  AQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRG---------- 127

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                                E  EAL LF +++R G   +   L ++L    ++     
Sbjct: 128 ---------------------EFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGL 166

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
              +H  ACK+G   +  V +AL+D YS                                
Sbjct: 167 ACGIHACACKLGHDRNAFVGTALIDAYSL------------------------------- 195

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG +  A+ +F  +  K  ++W +M+   S+N  P  AL+ F  M     + + F L S 
Sbjct: 196 CGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSA 255

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + A   +SS  LG+ +         D++  +  +L+D Y KCG I+
Sbjct: 256 LKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIE 301



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 40/293 (13%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +LQ+C     + +G+Q+H   +K G   S L + N L+ MY +C N  ++L +F  +
Sbjct: 353 LSGVLQACANIAFLELGEQIHNLAIKLG-YESELFVGNALMDMYAKCRNMENSLEIFSSL 411

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----GELKTA- 122
              N  SWN +I G+ + G  E +L +F+ M   +  S  +  S   +A      +K A 
Sbjct: 412 QDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAV 471

Query: 123 -------RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
                  ++ FN+    + I  NS+I  Y + GF R+A+++F+ +       ++CD    
Sbjct: 472 QIHSLIEKSTFNN----DTIVCNSLIDTYAKCGFIRDALKVFESI-------VECDVVSW 520

Query: 176 ATVIGACA----DLAALE-YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
            ++I A A       ALE + +   S I  N + F      SL+++ G  G  N    + 
Sbjct: 521 NSIISAYALHGRATNALELFDRMNKSDIKANDVTF-----VSLLSVCGSTGLVNQGLWLF 575

Query: 231 NMMK-----EPDDFCLSALISGYANCGKMNDARR-VFDRTTDTSSVMWNSMIS 277
           N M      +P     + ++      G++ DA + + D  +  S ++W +++S
Sbjct: 576 NSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLS 628


>gi|242092520|ref|XP_002436750.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
 gi|241914973|gb|EER88117.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
          Length = 672

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 203/460 (44%), Gaps = 90/460 (19%)

Query: 45  NRLLQMYMRCGNP---TDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
           N LL  Y R   P     A  LFDEMP+R+  SW+ ++  + + G  E++ +LF+ MP +
Sbjct: 102 NTLLAAYARSLQPDHLAAARRLFDEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHR 161

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N  SWN +++GF   G+++ A  +F  MP +++ + ++M+  ++RNG+  EA  L  +  
Sbjct: 162 NPASWNTMVTGFFAIGQMRKALNVFEAMPVKDSASLSAMVSGFIRNGWLHEADELLTKRL 221

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI----------------------- 198
             +      DAF   T+I A      +   +++ S I                       
Sbjct: 222 RAMDMDKAVDAF--NTLIAAYGQTGRVTDARRLFSMIPKTQSQHKGHKRRVFERNVVSWN 279

Query: 199 -----------------LVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
                            L + + F D V  ++++  Y +  D   A ++   +  PD   
Sbjct: 280 SMMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIAGYTQASDMEEAEKLFGEVPAPDAVT 339

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            + +I G+   G +  AR  FDR  + S++ WN+MISGY  N +    + LF +M     
Sbjct: 340 WNLMIRGFTQKGDVEHARGFFDRMPEQSTITWNTMISGYEQNEDYDCTIKLFQRM----- 394

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
                 L  VL+AC+SL  L  G Q+H           +I  S L DT +          
Sbjct: 395 ------LEVVLAACASLAMLRLGAQLH----------QLIEKSFLPDTATN--------- 429

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIE 419
                        N ++T+YS CG +  AK IF  M   K L+SWN++I G   +G+  E
Sbjct: 430 -------------NALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYEHHGNATE 476

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           AL LF  M    +     +  S++SAC N   +  G+ VF
Sbjct: 477 ALRLFQEMRSAKVMPTHITFISLLSACGNAGLVSEGQVVF 516



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 204/465 (43%), Gaps = 88/465 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           NR L   +R G  + A  LFD +P R+  +WN+ +    +      +   F+ MP ++  
Sbjct: 40  NRSLMGLLRRGRFSAARRLFDALPARSVVTWNSFLAALSRRRDVRAARSFFDAMPMRDII 99

Query: 105 SWNMLISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           SWN L++ +A++     L  AR LF++MP+R+A++W++++  Y R G   EA RLF E+ 
Sbjct: 100 SWNTLLAAYARSLQPDHLAAARRLFDEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMP 159

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
                    +     T++     +  +     +   + V     DS   S++V+ + + G
Sbjct: 160 -------HRNPASWNTMVTGFFAIGQMRKALNVFEAMPVK----DSASLSAMVSGFIRNG 208

Query: 222 DFNSANQVL-------NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS----- 269
             + A+++L       +M K  D F  + LI+ Y   G++ DARR+F     T S     
Sbjct: 209 WLHEADELLTKRLRAMDMDKAVDAF--NTLIAAYGQTGRVTDARRLFSMIPKTQSQHKGH 266

Query: 270 ---------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
                    V WNSM+  YI   +   A  LF +M                         
Sbjct: 267 KRRVFERNVVSWNSMMMCYIRTGDVCSARALFDEM------------------------- 301

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
                            D++  + ++  Y++     +A KLF E+   D +  N MI  +
Sbjct: 302 --------------PFKDLVTWNTMIAGYTQASDMEEAEKLFGEVPAPDAVTWNLMIRGF 347

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
           +  G +E A+  F  MP +S I+WN+MI G  QN       D  C + KL  RM    L 
Sbjct: 348 TQKGDVEHARGFFDRMPEQSTITWNTMISGYEQNE------DYDCTI-KLFQRM----LE 396

Query: 441 SVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            V++ACA+++ L LG Q+   +    L  D   + +L+  Y +CG
Sbjct: 397 VVLAACASLAMLRLGAQLHQLIEKSFL-PDTATNNALMTMYSRCG 440



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 158/337 (46%), Gaps = 48/337 (14%)

Query: 33  KKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92
           K+ +    +   N ++  Y+R G+   A  LFDEMP ++  +WN MI G+ +    E++ 
Sbjct: 267 KRRVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIAGYTQASDMEEAE 326

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LF  +P  +  +WN++I GF + G+++ AR  F+ MP ++ I WN+MI  Y +N     
Sbjct: 327 KLFGEVPAPDAVTWNLMIRGFTQKGDVEHARGFFDRMPEQSTITWNTMISGYEQNEDYDC 386

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
            ++LF+ +              L  V+ ACA LA L  G Q+H  I  + L  D+   ++
Sbjct: 387 TIKLFQRM--------------LEVVLAACASLAMLRLGAQLHQLIEKSFLP-DTATNNA 431

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           L+ +Y +CG+  SA  + + M    D    +ALI GY + G                   
Sbjct: 432 LMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYEHHGNA----------------- 474

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHA 330
                         TEAL LF +MR   V+    T  S+LSAC + G +  G+ V H   
Sbjct: 475 --------------TEALRLFQEMRSAKVMPTHITFISLLSACGNAGLVSEGQVVFHTMV 520

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            + G+   V   +AL++   + G   DA ++   + +
Sbjct: 521 HEYGLAPRVEHYAALVNLIGRHGQLEDALEVIKSMPI 557


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 186/391 (47%), Gaps = 67/391 (17%)

Query: 107  NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
            N L++ ++K G    AR +FNDM   + I+WNSMI    ++    E+V LF +L   L E
Sbjct: 943  NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDL---LHE 999

Query: 167  RLQCDAFILATVIGACADLA-ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L+ D F LA+V+ AC+ L   L   +QIH H L  G   DS + ++L+++         
Sbjct: 1000 GLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDV--------- 1050

Query: 226  ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                  Y+  GKM +A  +F    D     WN+M+ GYI  N+ 
Sbjct: 1051 ----------------------YSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDG 1088

Query: 286  TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
             +AL LF  + ++G   D  TLA+   AC  L  L+ GKQ+H HA K G   D+ V S +
Sbjct: 1089 KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 1148

Query: 346  LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
            LD Y K                               CG + +A  +F  +     ++W 
Sbjct: 1149 LDMYIK-------------------------------CGDMVNAGIVFNYISAPDDVAWT 1177

Query: 406  SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
            SMI G   NG+  +AL ++  M +  +  D+++ A++I A + +++LE G Q+ A V  +
Sbjct: 1178 SMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKL 1237

Query: 466  GLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
               SD  + TSLVD Y KCG I+ D Y L +
Sbjct: 1238 DCVSDPFVGTSLVDMYAKCGNIE-DAYRLFK 1267



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 144/495 (29%), Positives = 232/495 (46%), Gaps = 85/495 (17%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA +L+ C     +   + +H + +K G L   + ++  L+ +Y +CG   DA LLFD M
Sbjct: 730  LAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDVFVSGALVNIYSKCGRMRDARLLFDWM 788

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAG------ 117
              R+   WN M++G+++LG ++++ QLF+   +     ++FS  ++++G ++        
Sbjct: 789  RERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKW 848

Query: 118  -----ELKTAR-TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD 171
                 +   A+ +L +D P  +   WN  +   +  G    A+  F  +N      +  D
Sbjct: 849  LADQVQAYAAKLSLSDDNP--DVFCWNKKLSECLWAGDNWGAIECFVNMNG---LNIDYD 903

Query: 172  AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
            A  L  V+ A A    LE GKQ+H   + +GLD D  + +SLVN+Y K G    A +V N
Sbjct: 904  AVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFN 963

Query: 232  MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
             MK  D      LIS                         WNSMIS    ++ + E++ L
Sbjct: 964  DMKHLD------LIS-------------------------WNSMISSCAQSSLEEESVNL 992

Query: 292  FHKMRRNGVLEDASTLASVLSACSSL-GFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
            F  +   G+  D  TLASVL ACSSL   L   +Q+H HA K G I D  VA+ L+D YS
Sbjct: 993  FIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYS 1052

Query: 351  KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
            K                                G++E+A+ +F+   +  L  WN+M+ G
Sbjct: 1053 K-------------------------------SGKMEEAEFLFQNKDDLDLACWNAMMFG 1081

Query: 411  LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
                    +AL+LF  ++K   + D+ +LA+   AC  +  L+ G+Q+ A     G DSD
Sbjct: 1082 YIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSD 1141

Query: 471  QIISTSLVDFYCKCG 485
              +++ ++D Y KCG
Sbjct: 1142 LHVNSGILDMYIKCG 1156



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 209/451 (46%), Gaps = 79/451 (17%)

Query: 21   IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            + +GKQ+H   +K G L+S + +AN L+ MY + G    A  +F++M   +  SWN+MI 
Sbjct: 920  LELGKQVHGIAVKSG-LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 81   GFMKLGHKEKSLQLF-----------------------------NVMPQ----------- 100
               +   +E+S+ LF                             N+  Q           
Sbjct: 979  SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNI 1038

Query: 101  KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
             + F    LI  ++K+G+++ A  LF +    +   WN+M+  Y+     ++A+ LF  +
Sbjct: 1039 ADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLI 1098

Query: 161  NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
            +       + D   LAT   AC  L  L+ GKQIH+H +  G D D  + S ++++Y KC
Sbjct: 1099 HK---SGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKC 1155

Query: 221  GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                                           G M +A  VF+  +    V W SMISG +
Sbjct: 1156 -------------------------------GDMVNAGIVFNYISAPDDVAWTSMISGCV 1184

Query: 281  SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
             N  + +AL ++H+MR++ V+ D  T A+++ A S +  LE G+Q+H +  K+  + D  
Sbjct: 1185 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 1244

Query: 341  VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
            V ++L+D Y+K G   DA +LF ++ V +  L N M+   +  G  E+A ++F++M +  
Sbjct: 1245 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 1304

Query: 401  L----ISWNSMIVGLSQNGSPIEALDLFCNM 427
            +    +S+  ++   S  G   EA +   +M
Sbjct: 1305 IEPDRVSFIGILSACSHAGLTSEAYEYLHSM 1335



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 197/439 (44%), Gaps = 87/439 (19%)

Query: 104  FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV-----RNGFAREAVRLFK 158
            F  N L++ ++K G L +AR +F+  P R+ + WN+++  Y       +G A+E + LF+
Sbjct: 657  FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR 716

Query: 159  ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
             L + L    +     LA V+  C +   L   + +H + +  GL++D  +  +LVN+Y 
Sbjct: 717  LLRASLGSTTR---MTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYS 773

Query: 219  KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR--------------- 263
            KCG    A  + + M+E D    + ++ GY   G   +A ++F                 
Sbjct: 774  KCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQL 833

Query: 264  -----------------------------TTDTSSVM-WNSMISGYISNNEDTEALLLFH 293
                                         + D   V  WN  +S  +   ++  A+  F 
Sbjct: 834  ILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFV 893

Query: 294  KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
             M    +  DA TL  VL+A +    LE GKQVHG A K G+  DV VA++L++ YSK G
Sbjct: 894  NMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 953

Query: 354  MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                A ++F+++K  D                               LISWNSMI   +Q
Sbjct: 954  CAYFAREVFNDMKHLD-------------------------------LISWNSMISSCAQ 982

Query: 414  NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN-ISSLELGEQVFARVTIIGLDSDQI 472
            +    E+++LF ++    L+ D F+LASV+ AC++ I  L +  Q+       G  +D  
Sbjct: 983  SSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSF 1042

Query: 473  ISTSLVDFYCKCGFIKMDE 491
            ++T+L+D Y K G  KM+E
Sbjct: 1043 VATTLIDVYSKSG--KMEE 1059



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 131/299 (43%), Gaps = 50/299 (16%)

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS-----NNEDTEALLL 291
           D F  + L++ Y+ CG ++ AR+VFD T +   V WN+++  Y +     +    E L L
Sbjct: 655 DHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHL 714

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  +R +       TLA VL  C + G L   + VHG+A K+G+  DV V+ AL++ YSK
Sbjct: 715 FRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 774

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM--------------- 396
            G   DA  LF  ++  D +L N M+  Y   G  ++A  +F                  
Sbjct: 775 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 834

Query: 397 ------------------------------PNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                                          N  +  WN  +      G    A++ F N
Sbjct: 835 LNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVN 894

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           MN L++  D  +L  V++A A    LELG+QV       GLDSD  ++ SLV+ Y K G
Sbjct: 895 MNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 953



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 46/267 (17%)

Query: 8    LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            LA   ++C     +  GKQ+H H +K G  +S L + + +L MY++CG+  +A ++F+ +
Sbjct: 1110 LATAAKACGCLVLLDQGKQIHAHAIKAG-FDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 1168

Query: 68   PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQK-------------------- 101
               +  +W +MI G +  G+++++L++++      VMP +                    
Sbjct: 1169 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 1228

Query: 102  -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                         + F    L+  +AK G ++ A  LF  M  RN   WN+M+    ++G
Sbjct: 1229 QLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHG 1288

Query: 149  FAREAVRLFKELNSDLVERLQCDAFILATVIGAC--ADLAALEYGKQIHSHILVNGLDFD 206
             A EAV LFK + S  +E    D      ++ AC  A L +  Y + +HS     G++ +
Sbjct: 1289 NAEEAVNLFKSMKSHGIE---PDRVSFIGILSACSHAGLTSEAY-EYLHSMPNDYGIEPE 1344

Query: 207  SVLGSSLVNLYGKCGDFNSANQVLNMM 233
                S LV+  G+ G    A++V+  M
Sbjct: 1345 IEHYSCLVDALGRAGLVQEADKVIETM 1371


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 221/492 (44%), Gaps = 105/492 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  ++++C    ++ +G+ +H H + K  L+    +   L+ MY++C    DA  LFD+M
Sbjct: 33  LPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM 91

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMP---------------------- 99
             R+  +W  MI G+ + G   +SL LF       V+P                      
Sbjct: 92  QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 151

Query: 100 ------QKNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                 Q+  F  ++     +I  +AK G +++AR +F+ M  +N I+W++MI  Y  +G
Sbjct: 152 IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 211

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             R+A+ LF+ +   L   +  D   LA+++ AC+DL  L+ G+ IH  +   GLD D  
Sbjct: 212 QGRKALDLFRMM---LSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDH- 267

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                         F  +AL+  Y  C ++ DAR +FD+  +  
Sbjct: 268 ------------------------------FVCAALVDMYGKCREIEDARFLFDKMPERD 297

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W  MI GY       E+L+LF KMR  GV+ D   + +V+ AC+ LG +   + +  
Sbjct: 298 LVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDD 357

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           +  +     DVI+ +A++D ++K G    A ++F                          
Sbjct: 358 YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDR------------------------ 393

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                  M  K++ISW++MI     +G   +ALDLF  M +  +  +K +L S++ AC++
Sbjct: 394 -------MEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 446

Query: 449 ISSLELGEQVFA 460
              +E G + F+
Sbjct: 447 AGLVEEGLRFFS 458



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 180/387 (46%), Gaps = 65/387 (16%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           + F    L+  + K  E++ AR LF+ M  R+ + W  MI  Y   G A E++ LF+++ 
Sbjct: 64  DHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR 123

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
               E +  D   + TV+ ACA L A+   + I  +I       D +LG++++++Y K  
Sbjct: 124 E---EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK-- 178

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                        CG +  AR +FDR  + + + W++MI+ Y  
Sbjct: 179 -----------------------------CGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           + +  +AL LF  M  +G+L D  TLAS+L ACS L  L+ G+ +H    K G+  D  V
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFV 269

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +AL+D Y K                               C  IEDA+ +F  MP + L
Sbjct: 270 CAALVDMYGK-------------------------------CREIEDARFLFDKMPERDL 298

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ++W  MI G ++ G+  E+L LF  M +  +  DK ++ +V+ ACA + ++     +   
Sbjct: 299 VTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDY 358

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +       D I+ T+++D + KCG ++
Sbjct: 359 IQRKKFQLDVILGTAMIDMHAKCGCVE 385



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 138/314 (43%), Gaps = 62/314 (19%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D + L  VI AC DL  L+ G+ IH  +   GLD D                        
Sbjct: 29  DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDH----------------------- 65

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                   F  +AL+  Y  C ++ DAR +FD+  +   V W  MI GY    +  E+L+
Sbjct: 66  --------FVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLV 117

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           LF KMR  GV+ D   + +V+ AC+ LG +   + +  +  +     DVI+ +A++D Y+
Sbjct: 118 LFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYA 177

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G    A ++F  ++  + I  + MI  Y   G+   A  +FR M +  ++        
Sbjct: 178 KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLP------- 230

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
                                   DK +LAS++ AC+++ +L++G  +   V   GLD D
Sbjct: 231 ------------------------DKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLD 266

Query: 471 QIISTSLVDFYCKC 484
             +  +LVD Y KC
Sbjct: 267 HFVCAALVDMYGKC 280



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 31/214 (14%)

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           M+ G+    +       F ++ R G   D  TL  V+ AC  L  L+ G+ +H    K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
           +  D  V +AL+D Y K     DA  LF +++  D +    MI  Y+ CG+         
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK--------- 111

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
              N+SL+                    LF  M +  +  DK ++ +V+ ACA + ++  
Sbjct: 112 --ANESLV--------------------LFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              +   +       D I+ T+++D Y KCG ++
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVE 183


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 232/523 (44%), Gaps = 105/523 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            ARLLQ   +   +H    +H   +  G+   T  ++N L+ +Y R G    A  +F++M
Sbjct: 47  FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTY-LSNILINLYSRAGGMVYARKVFEKM 105

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDF----------------SW 106
           P RN  SW+ M+      G  E+SL +F           N++                 W
Sbjct: 106 PERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW 165

Query: 107 ---------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                                 +LI  + K G +  AR +F+ +P ++ + W +MI   V
Sbjct: 166 MVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCV 225

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           + G +  +++LF +L  D V     D +IL+TV+ AC+ L  LE GKQIH+HIL  GL+ 
Sbjct: 226 KMGRSYVSLQLFYQLMEDNVVP---DGYILSTVLSACSILPFLEGGKQIHAHILRYGLEM 282

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D+    SL+N+                           LI  Y  CG++  A ++F+   
Sbjct: 283 DA----SLMNV---------------------------LIDSYVKCGRVIAAHKLFNGMP 311

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           + + + W +++SGY  N    EA+ LF  M + G+  D    +S+L++C+SL  L  G Q
Sbjct: 312 NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ 371

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH +  K  + +D  V ++L+D Y+K    +DA K+F      D +L N MI  YS  G 
Sbjct: 372 VHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLG- 430

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
                             W              EAL++F +M    +R    +  S++ A
Sbjct: 431 ----------------TQWELH-----------EALNIFRDMRFRLIRPSLLTFVSLLRA 463

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            A+++SL L +Q+   +   GL+ D    ++L+D Y  C  +K
Sbjct: 464 SASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLK 506



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/531 (23%), Positives = 230/531 (43%), Gaps = 84/531 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C+    +  GKQ+H H L+ G L     + N L+  Y++CG    A  LF+ M
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYG-LEMDASLMNVLIDSYVKCGRVIAAHKLFNGM 310

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P +N  SW  ++ G+ +    +++++LF  M +                           
Sbjct: 311 PNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGT 370

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + +  N LI  +AK   L  AR +F+     + + +N+MI  Y R G
Sbjct: 371 QVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLG 430

Query: 149 FA---REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
                 EA+ +F+++   L+   +       +++ A A L +L   KQIH  +   GL+ 
Sbjct: 431 TQWELHEALNIFRDMRFRLI---RPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNL 487

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D   GS+L+++                               Y+NC  + D+R VFD   
Sbjct: 488 DIFAGSALIDV-------------------------------YSNCYCLKDSRLVFDEMK 516

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
               V+WNSM +GY+  +E+ EAL LF +++ +    D  T A++++A  +L  ++ G++
Sbjct: 517 VKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQE 576

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            H    K G+  +  + +ALLD Y+K G P DA K F      D +  N++I+ Y++ G 
Sbjct: 577 FHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGE 636

Query: 386 IEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            + A  +   M ++ +    I++  ++   S  G   + L  F  M +  +  +      
Sbjct: 637 GKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVC 696

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           ++S       L    ++  ++         I+  SL+    K G +++ E+
Sbjct: 697 MVSLLGRAGRLNKARELIEKMPT---KPAAIVWRSLLSGCAKAGNVELAEH 744


>gi|347954452|gb|AEP33726.1| chlororespiratory reduction 21, partial [Aethionema cordifolium]
          Length = 618

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 199/419 (47%), Gaps = 74/419 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           + K G L  AR +F+ MP RN +AWNS++  YV+NG   EA+RL  ++ ++ +E  +   
Sbjct: 3   YGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTR--- 59

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
             ++T + A A +  +E GKQ H+  +VNGL+ D++LG+S++N Y K G           
Sbjct: 60  VTVSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVG----------- 108

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                      LI     C +M     +FD+  +   V WN +ISGY+      +A+   
Sbjct: 109 -----------LIE----CAEM-----IFDKMIEKDVVTWNLLISGYVQQGLIEDAIYKC 148

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             MR   +  D  T+++++SA +    L  GKQ+  +  +  +  D++ AS  +D Y+K 
Sbjct: 149 KLMRLENLKFDCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSLESDIVSASTTVDMYAKC 208

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSC----------------------------- 383
           G   DA K+F      D +L NT++  Y+                               
Sbjct: 209 GRILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLII 268

Query: 384 ------GRIEDAKHIF----RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                 G++ +AK +F     T  + +LISW +++ GL QNG   EA+  F  M +  LR
Sbjct: 269 LSLLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEAIMYFKKMQESGLR 328

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI-ISTSLVDFYCKCGFIKMDE 491
            + FS    +SAC+N++SL  G  +   +      S  + + TSL+D Y KCG I   E
Sbjct: 329 PNPFSXTVALSACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINKAE 387



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/489 (22%), Positives = 209/489 (42%), Gaps = 111/489 (22%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND 103
           MY +CG   DA  +FD MP RN  +WN+++ G+++ G  E++++L + M      P +  
Sbjct: 2   MYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVT 61

Query: 104 FSWNM-------------------LISG--------------FAKAGELKTARTLFNDMP 130
            S  +                   +++G              + K G ++ A  +F+ M 
Sbjct: 62  VSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAEMIFDKMI 121

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ + WN +I  YV+ G   +A+   K +    +E L+ D   ++T++ A A    L  
Sbjct: 122 EKDVVTWNLLISGYVQQGLIEDAIYKCKLMR---LENLKFDCVTISTLMSAAAHTQDLNL 178

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQ+  + L N L+ D V  S+ V++Y KCG    A +V +     D    + L++ YA 
Sbjct: 179 GKQLQCYCLRNSLESDIVSASTTVDMYAKCGRILDAKKVFDSTVHKDLMLWNTLLAAYAE 238

Query: 251 C-----------------------------------GKMNDARRVFDRTTDT----SSVM 271
                                               G++ +A+ +F +   T    + + 
Sbjct: 239 SSHSGEALRLFYEMQLESVTPNVISWNLIILSLLRXGQVTEAKXMFLQIQSTGISPNLIS 298

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W ++++G + N    EA++ F KM+ +G+  +  +    LSACS+L  L  G+ +HG+  
Sbjct: 299 WTTLMNGLVQNGYSEEAIMYFKKMQESGLRPNPFSXTVALSACSNLASLHFGRSIHGYII 358

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +    +     S  L+T                          +++ +Y+ CG I  A+ 
Sbjct: 359 R----NQWHSGSVSLET--------------------------SLLDMYAKCGDINKAER 388

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F       L  +N+MI      G   EA+ L+ ++  LD++ D  +  +++SAC +  S
Sbjct: 389 VFGNKLYSELPLYNAMISAYGLYGKVEEAITLYRDLEALDIKPDNITFTNLLSACNHTGS 448

Query: 452 LELGEQVFA 460
           +    Q+F 
Sbjct: 449 VNQAIQIFT 457



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 179/399 (44%), Gaps = 74/399 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ L+ +      +++GKQL  + L+   L S +  A+  + MY +CG   DA  +FD  
Sbjct: 163 ISTLMSAAAHTQDLNLGKQLQCYCLRNS-LESDIVSASTTVDMYAKCGRILDAKKVFDST 221

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             ++   WN ++  + +  H  ++L+LF  M       N  SWN++I    + G++  A+
Sbjct: 222 VHKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLIILSLLRXGQVTEAK 281

Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +F  +       N I+W ++++  V+NG++ EA+  FK++       L+ + F     +
Sbjct: 282 XMFLQIQSTGISPNLISWTTLMNGLVQNGYSEEAIMYFKKMQES---GLRPNPFSXTVAL 338

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
            AC++LA+L +G+ IH +I+ N     SV L +SL+++Y KCGD N              
Sbjct: 339 SACSNLASLHFGRSIHGYIIRNQWHSGSVSLETSLLDMYAKCGDINK------------- 385

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
                             A RVF     +   ++N+MIS Y    +  EA+ L+  +   
Sbjct: 386 ------------------AERVFGNKLYSELPLYNAMISAYGLYGKVEEAITLYRDLEAL 427

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            +  D  T  ++LSAC+  G +    Q+                    D  SK GM    
Sbjct: 428 DIKPDNITFTNLLSACNHTGSVNQAIQI------------------FTDMVSKHGM--QP 467

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           C     L+ Y       M+ +++S G IE+A  I + MP
Sbjct: 468 C-----LEHY-----GLMVDLFASSGEIEEALRIVKDMP 496



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 101/342 (29%)

Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
           ++YGKCG  + A +V + M E                      R V         V WNS
Sbjct: 1   DMYGKCGILDDARKVFDRMPE----------------------RNV---------VAWNS 29

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA---- 330
           ++ GY+ N  + EA+ L   M   G+     T+++ LSA + +G +E GKQ H  A    
Sbjct: 30  LMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVTVSTCLSASAHMGGIEEGKQSHAIAIVNG 89

Query: 331 ---------------CKVGVID------------DVIVASALLDTYSKRGMPSDA---CK 360
                          CKVG+I+            DV+  + L+  Y ++G+  DA   CK
Sbjct: 90  LELDNILGTSILNFYCKVGLIECAEMIFDKMIEKDVVTWNLLISGYVQQGLIEDAIYKCK 149

Query: 361 LF----------------------------SELKVY--------DTILLNTMITVYSSCG 384
           L                              +L+ Y        D +  +T + +Y+ CG
Sbjct: 150 LMRLENLKFDCVTISTLMSAAAHTQDLNLGKQLQCYCLRNSLESDIVSASTTVDMYAKCG 209

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
           RI DAK +F +  +K L+ WN+++   +++    EAL LF  M    +  +  S   +I 
Sbjct: 210 RILDAKKVFDSTVHKDLMLWNTLLAAYAESSHSGEALRLFYEMQLESVTPNVISWNLIIL 269

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
           +      +   + +F ++   G+  + I  T+L++   + G+
Sbjct: 270 SLLRXGQVTEAKXMFLQIQSTGISPNLISWTTLMNGLVQNGY 311



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 72/113 (63%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y  CG ++DA+ +F  MP +++++WNS++VG  QNG   EA+ L  +M    +   + +
Sbjct: 2   MYGKCGILDDARKVFDRMPERNVVAWNSLMVGYVQNGMNEEAIRLLSDMMNEGIEPTRVT 61

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +++ +SA A++  +E G+Q  A   + GL+ D I+ TS+++FYCK G I+  E
Sbjct: 62  VSTCLSASAHMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIECAE 114


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 132/560 (23%), Positives = 234/560 (41%), Gaps = 144/560 (25%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C       + K +H   L  G   S L I N L+ MY R  +   A  +F+EMP R
Sbjct: 180 VINACAGLLDFEMAKSIHDRVLXMG-FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR 238

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           +  SWN++I G+   G+  ++L+++       V+P                         
Sbjct: 239 DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIH 298

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   +K+    N L+S + K   L   R +F+ M  R+A++WN+MI  Y + G   
Sbjct: 299 GLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYE 358

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E+++LF E+    V + + D   + +++ AC  L  LE+GK +H +++ +G + D+   +
Sbjct: 359 ESIKLFMEM----VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 414

Query: 212 SLVNLYGKCGD-------------------------------FNSANQVLNMMK---EPD 237
            L+N+Y KCG+                               F+ A ++  MMK   +PD
Sbjct: 415 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPD 474

Query: 238 ---------------DFCL--------------------SALISGYANCGKMNDARRVFD 262
                          D  L                    + L+  YA CG+M D+ +VF+
Sbjct: 475 SVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFE 534

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                  + WN++I+  + + +    L +  +MR  GV  D +T+ S+L  CS L     
Sbjct: 535 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 594

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++HG   K+G+  DV V + L++ YSK                               
Sbjct: 595 GKEIHGCIFKLGLESDVPVGNVLIEMYSK------------------------------- 623

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG + ++  +F+ M  K +++W ++I      G   +A+  F  M    +  D  +  ++
Sbjct: 624 CGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAI 683

Query: 443 ISACANISSLELGEQVFARV 462
           I AC++   +E G   F R+
Sbjct: 684 IFACSHSGLVEEGLNYFHRM 703



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 67/378 (17%)

Query: 109 LISGFAKAGELKTARTLFN-DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
           LI+ +A   +  ++ ++F    P  N   WNS+I     NG   EA+ L+ E       R
Sbjct: 113 LIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRI---R 169

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           LQ D +   +VI ACA L   E  K IH  +L  G   D  +G++L+++Y +  D     
Sbjct: 170 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFND----- 224

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                     ++ AR+VF+       V WNS+ISGY +N    E
Sbjct: 225 --------------------------LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE 258

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           AL ++++ R  GV+ D+ T++SVL AC  LG +E G  +HG   K+G+  DVIV + LL 
Sbjct: 259 ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 318

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y K     D  ++F ++ + D +  NTMI  YS  G  E++  +F  M N+        
Sbjct: 319 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-------- 370

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
                                    + D  ++ S++ AC ++  LE G+ V   +   G 
Sbjct: 371 ------------------------FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGY 406

Query: 468 DSDQIISTSLVDFYCKCG 485
           + D   S  L++ Y KCG
Sbjct: 407 ECDTTASNILINMYAKCG 424



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 36/253 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C+   +   GK++H    K G L S +P+ N L++MY +CG+  ++  +F  M  +
Sbjct: 582 ILPVCSLLAAKRQGKEIHGCIFKLG-LESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK 640

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  +W A+I      G  +K+++ F                     GE++ A  +     
Sbjct: 641 DVVTWTALISACGMYGEGKKAVRAF---------------------GEMEAAGIV----- 674

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
             + +A+ ++I     +G   E +  F  +  D     + + +  A V+   +  A L+ 
Sbjct: 675 -PDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHY--ACVVDLLSRSALLDK 731

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISG- 247
            +     IL   L  DS +  +L++     GD   A +V   + E  PDD     L+S  
Sbjct: 732 AEDF---ILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNV 788

Query: 248 YANCGKMNDARRV 260
           YA  GK +  R +
Sbjct: 789 YAALGKWDQVRSI 801


>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 209/485 (43%), Gaps = 104/485 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C +   +H  K LH   +K G   S + I   LL  Y +CG   DA         R
Sbjct: 52  LFKACASLPFLHYVKALHAESIKAG-SESDVIIGTALLTTYSKCGVVRDA---------R 101

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           N                      LF+ MP++N  +WN +ISG+ + G+ ++A  +F  M 
Sbjct: 102 N----------------------LFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQ 139

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +  + W+ MI  + RNG    A RLF E+  +L                          
Sbjct: 140 GKTQVTWSQMIGGFARNGDIATARRLFDEVPHELK------------------------- 174

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
                          + V  + +V+ Y + G+  +A +V  MM E + F  S++I GY  
Sbjct: 175 ---------------NVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFK 219

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G + +A  VFD     +  +WNSMI+GY+ N    +ALL F  M   G   D  T+ SV
Sbjct: 220 KGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSV 279

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           LSAC+ LG L+ GKQ+H      G++ +  V S L+D Y+K                   
Sbjct: 280 LSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAK------------------- 320

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
                       CG + +A+ +F     K++  WN+MI G + NG   E L+ F  M + 
Sbjct: 321 ------------CGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEES 368

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
           ++R D  +  +V+SACA+   +    +V +++    ++        +VD   + G +K D
Sbjct: 369 NIRPDGITFLTVLSACAHRGLVTEALEVISKMEGYRIEIGIKHYGCMVDLLGRAGRLK-D 427

Query: 491 EYYLM 495
            Y L+
Sbjct: 428 AYDLI 432



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 167/355 (47%), Gaps = 41/355 (11%)

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           R N   W   I  +++ G  R A+  +K+   + V     D+ +   +  ACA L  L Y
Sbjct: 9   RNNPSHWFCSIRNHIQQGSLRCALLAYKQTRHEGVY----DSSVAPLLFKACASLPFLHY 64

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            K +H+  +  G + D ++G+                               AL++ Y+ 
Sbjct: 65  VKALHAESIKAGSESDVIIGT-------------------------------ALLTTYSK 93

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG + DAR +FD   + + V WN+MISGY+ N +   A L+F KM+     +   T + +
Sbjct: 94  CGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQG----KTQVTWSQM 149

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +   +  G +   +++         + +V+  + ++D Y++ G    A ++F  +   + 
Sbjct: 150 IGGFARNGDIATARRLFDEVPHE--LKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNC 207

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            + ++MI  Y   G + +A  +F  +P ++L  WNSMI G  QNG   +AL  F  M   
Sbjct: 208 FVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAE 267

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
               D+F++ SV+SACA +  L++G+Q+   +   G+  +  + + LVD Y KCG
Sbjct: 268 GFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCG 322


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 130/560 (23%), Positives = 232/560 (41%), Gaps = 144/560 (25%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C       + K +H   L  G   S L I N L+ MY R  +   A  +F+EMP R
Sbjct: 121 VINACAGLLDFEMAKSIHDRVLDMG-FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR 179

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
           +  SWN++I G+   G+  ++L+++       V+P                         
Sbjct: 180 DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIH 239

Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   +K+    N L+S + K   L   R +F+ M  R+A++WN+MI  Y + G   
Sbjct: 240 GLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYE 299

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           E+++LF E+    V + + D   + +++ AC  L  LE+GK +H +++ +G + D+   +
Sbjct: 300 ESIKLFMEM----VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 355

Query: 212 SLVNLYGKCGD-------------------------------FNSANQVLNMMK---EPD 237
            L+N+Y KCG+                               F+ A ++  MMK   +PD
Sbjct: 356 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPD 415

Query: 238 DFCL-----------------------------------SALISGYANCGKMNDARRVFD 262
                                                  + L+  YA CG+M D+ +VF+
Sbjct: 416 SVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFE 475

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
                  + WN++I+  + + +    L +  +MR  GV  D +T+ S+L  CS L     
Sbjct: 476 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 535

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
           GK++HG   K+G+  DV V + L++ YSK                               
Sbjct: 536 GKEIHGCIFKLGLESDVPVGNVLIEMYSK------------------------------- 564

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
           CG + ++  +F+ M  K +++W ++I      G   +A+  F  M    +  D  +  ++
Sbjct: 565 CGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAI 624

Query: 443 ISACANISSLELGEQVFARV 462
           I AC++   +E G   F R+
Sbjct: 625 IFACSHSGLVEEGLNYFHRM 644



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 67/378 (17%)

Query: 109 LISGFAKAGELKTARTLFN-DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167
           LI+ +A   +  ++ ++F    P  N   WNS+I     NG   EA+ L+ E       R
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRI---R 110

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           LQ D +   +VI ACA L   E  K IH  +L  G   D  +G++L+++Y +  D     
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFND----- 165

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                     ++ AR+VF+       V WNS+ISGY +N    E
Sbjct: 166 --------------------------LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE 199

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           AL ++++ R  GV+ D+ T++SVL AC  LG +E G  +HG   K+G+  DVIV + LL 
Sbjct: 200 ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 259

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y K     D  ++F ++ + D +  NTMI  YS  G  E++  +F  M N+        
Sbjct: 260 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-------- 311

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
                                    + D  ++ S++ AC ++  LE G+ V   +   G 
Sbjct: 312 ------------------------FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGY 347

Query: 468 DSDQIISTSLVDFYCKCG 485
           + D   S  L++ Y KCG
Sbjct: 348 ECDTTASNILINMYAKCG 365


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 225/481 (46%), Gaps = 82/481 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C+  ++I  GK +H   L+ G+    + + N +L +Y++C     A   F+ M
Sbjct: 137 LSSVLKCCSRENNIQFGKGIHAWILRNGV-GGDVVLENSILDLYLKCKEFEYAESFFELM 195

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             ++  SWN MI  +++ G  EKSL++F   P K+  SWN +I G  + G  + A     
Sbjct: 196 IEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLAL---- 251

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
                        ++C V +G     V                  F +A ++   + L+ 
Sbjct: 252 -----------EQLYCMVAHGTEFSPV-----------------TFSIALIL--VSSLSL 281

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           +E G+Q+H  +L  GL+ D  + SSLV +YGKCG  + A+ +L       D  L+ L  G
Sbjct: 282 VEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILK------DVPLNFLRKG 335

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
             N G       V  +      V W+SM+SGY+ N +  + +  F  M    ++ D  T+
Sbjct: 336 --NFG-------VTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTV 386

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A+++SAC++ G LE GKQ+H +  K+G+  D  V S+L+D YSK G   DA  +F ++K 
Sbjct: 387 ATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKE 446

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            + +L  +MI+                               G + +G   EA+ LF  M
Sbjct: 447 PNVVLWTSMIS-------------------------------GCALHGQGKEAISLFEGM 475

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGF 486
             L +  ++ +   V++AC+++  +E G + F  +     ++ +    TS+V+ Y + G 
Sbjct: 476 LNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGH 535

Query: 487 I 487
           +
Sbjct: 536 L 536



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 196/408 (48%), Gaps = 39/408 (9%)

Query: 86  GH--KEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
           GH  K+ SLQ+ N        S N L++ + K+  L  A  LF+++  +N   W  +I  
Sbjct: 56  GHYFKKGSLQILN--------SANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISG 107

Query: 144 YVRNGFAREAV-RLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVN 201
           + R   + E V  LF+E+ +D      C + + L++V+  C+    +++GK IH+ IL N
Sbjct: 108 FARAAGSSELVFSLFREMQADGA----CPNQYTLSSVLKCCSRENNIQFGKGIHAWILRN 163

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           G+  D VL +S+++LY KC +F  A     +M E D    + +I  Y   G +  +  +F
Sbjct: 164 GVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMF 223

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
               +   V WN++I G I    +  AL   + M  +G      T +  L   SSL  +E
Sbjct: 224 RNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVE 283

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G+Q+HG     G+  D  + S+L++ Y K G    A  +  ++ +      N  +T   
Sbjct: 284 VGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVT--- 340

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF----CNMNKLDLRMDKF 437
            C             P   ++SW+SM+ G   NG   + +  F    C +  +D+R    
Sbjct: 341 -CKE-----------PKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIR---- 384

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++A++ISACAN   LE G+Q+ A +  IGL  D  + +SL+D Y K G
Sbjct: 385 TVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSG 432



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 110/268 (41%), Gaps = 64/268 (23%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP----RRNCF--- 73
           + VG+QLH   L  G LNS   I + L++MY +CG    A  +  ++P    R+  F   
Sbjct: 282 VEVGRQLHGRVLTFG-LNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVT 340

Query: 74  ---------SWNAMIEGFMKLGHKEKSLQLFNVMP------------------------- 99
                    SW++M+ G++  G  E  ++ F  M                          
Sbjct: 341 CKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILE 400

Query: 100 ---------QK-----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                    QK     + +  + LI  ++K+G L  A  +F  +   N + W SMI    
Sbjct: 401 FGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCA 460

Query: 146 RNGFAREAVRLFKE-LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
            +G  +EA+ LF+  LN  ++     +      V+ AC+ +  +E G + +  ++ +   
Sbjct: 461 LHGQGKEAISLFEGMLNLGIIP----NEVTFVGVLNACSHVGLIEEGCR-YFRMMKDTYH 515

Query: 205 FDSVLG--SSLVNLYGKCGDFNSANQVL 230
            +  +   +S+VNLYG+ G    A   +
Sbjct: 516 INPEVEHYTSMVNLYGRAGHLIEAKNFI 543


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 176/363 (48%), Gaps = 34/363 (9%)

Query: 97  VMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL 156
           V   ++ F    L+  +A    +  AR +F+ MP R+ +AW  M+  Y      RE + L
Sbjct: 22  VGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLL 81

Query: 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216
             ++      R+  D  ILATV+  C     L  GK IHS+I V+ +  D+ L S+L+N+
Sbjct: 82  LNKMKRS---RVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINM 138

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
           Y  C D   A+++ + M+  D    +A++ GYA  GK+  AR +F+   +   V W++MI
Sbjct: 139 YASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMI 198

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           S Y  NN+ +E L LF+KM+  GV  D  T+ SV+SAC+++G L+  + +H      G  
Sbjct: 199 SAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFY 258

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
             + + +AL+D +SK                               CG +  A ++F  M
Sbjct: 259 KILSICNALIDMFSK-------------------------------CGSLTLALNMFNAM 287

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P K++I+W SMI   + +G    AL LF  M    +  +  +   ++ AC +   +  G 
Sbjct: 288 PRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGR 347

Query: 457 QVF 459
            +F
Sbjct: 348 SLF 350



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 136/255 (53%)

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           + D F  +AL+  YA C ++ +ARRVFD   +   V W  M+  Y +     E LLL +K
Sbjct: 25  DEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNK 84

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M+R+ V+ D   LA+VLS C     L  GK +H +     +  D  ++SAL++ Y+    
Sbjct: 85  MKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMD 144

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
              A K++S ++  D +    M+  Y+  G+IE A+ IF  M  K ++SW++MI   ++N
Sbjct: 145 MEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAEN 204

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
             P E L+LF  M    +  D+ ++ SVISACANI SL+    + + V   G      I 
Sbjct: 205 NQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSIC 264

Query: 475 TSLVDFYCKCGFIKM 489
            +L+D + KCG + +
Sbjct: 265 NALIDMFSKCGSLTL 279



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 38/253 (15%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           +A+I  +      E + ++++ M +K+  S   ++ G+AK G+++ AR++FN M  ++ +
Sbjct: 133 SALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVV 192

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +W++MI  Y  N    E + LF ++    V     D   + +VI ACA++ +L+  + IH
Sbjct: 193 SWSAMISAYAENNQPSEVLNLFNKMQGCGVSP---DEITMLSVISACANIGSLDKARWIH 249

Query: 196 SHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
           S  +V    F  +L   ++L++++ KCG    A   LNM                     
Sbjct: 250 S--IVGNHGFYKILSICNALIDMFSKCGSLTLA---LNM--------------------- 283

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
                  F+     + + W SMI+ +  + +   AL LF +M+  GV  +  T   +L A
Sbjct: 284 -------FNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYA 336

Query: 314 CSSLGFLEHGKQV 326
           C   G +  G+ +
Sbjct: 337 CCHAGLVYEGRSL 349



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 16/203 (7%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP- 99
           L I N L+ M+ +CG+ T AL +F+ MPR+N  +W +MI  F   G    +L LF  M  
Sbjct: 261 LSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKG 320

Query: 100 ---QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRNGFAR 151
              + N  ++ +L+     AG +   R+LF  M +   I      +  M+    R    +
Sbjct: 321 EGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQ 380

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EAV L + ++      ++ +  I  +++ AC     +E G+     IL    + D     
Sbjct: 381 EAVDLIESMH------IRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAY-V 433

Query: 212 SLVNLYGKCGDFNSANQVLNMMK 234
            L N++ K G++N+A ++  MMK
Sbjct: 434 LLSNIHAKSGNWNNAQKLRVMMK 456



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 39/155 (25%)

Query: 51  YMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK--- 101
           Y + G    A  +F+ M  ++  SW+AMI  + +     + L LFN M      P +   
Sbjct: 170 YAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITM 229

Query: 102 -------------NDFSW-----------------NMLISGFAKAGELKTARTLFNDMPR 131
                        +   W                 N LI  F+K G L  A  +FN MPR
Sbjct: 230 LSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPR 289

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           +N I W SMI  +  +G    A+ LF ++  + VE
Sbjct: 290 KNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVE 324


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 223/474 (47%), Gaps = 79/474 (16%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM----PRRNCFSWNAM 78
           VG+ +    L  G  + +    + L+  Y R G   +A  LF  M     + + ++  ++
Sbjct: 159 VGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSI 218

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNM-----LISGFAKAGELKTARTLFNDMP--R 131
           + G   LG  +K  ++ +    KN F  N+     L+  +AK   +  A  LF  +   +
Sbjct: 219 LRGCSALGLIQKG-EMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNK 277

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
            N + W +M+  Y +NG   +A+  F+ ++++ VE  Q   F   +++ AC+ ++A  +G
Sbjct: 278 GNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQ---FTFPSILTACSSVSAHCFG 334

Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           +Q+H  I+ NG   ++ + S+LV++Y K                               C
Sbjct: 335 EQVHGCIVRNGFGCNAYVQSALVDMYAK-------------------------------C 363

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G +  A+RV +   D   V WNSMI G + +  + EA+LLF KM    +  D  T  SVL
Sbjct: 364 GDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVL 423

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
           + C  +G ++ GK VH    K G  +  +V++AL+D Y+K                  T 
Sbjct: 424 NCCI-VGRID-GKSVHCLVIKTGFENYKLVSNALVDMYAK------------------TE 463

Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
            LN              A  +F  M  K +ISW S++ G +QNGS  E+L  FC+M    
Sbjct: 464 DLNC-------------AYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISG 510

Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +  D+F +AS++SACA ++ LE G+QV +    +GL S   ++ SLV  Y KCG
Sbjct: 511 VSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCG 564



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 203/414 (49%), Gaps = 65/414 (15%)

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
           ++ F  N ++ G  K G  + + +LF+ M Q+++++WN ++SG+A  G L  AR LFN  
Sbjct: 113 QSIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGF 172

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
             R++I W+S+I  Y R G   EA  LFK +    +E  +   + L +++  C+ L  ++
Sbjct: 173 SSRSSITWSSLISGYCRFGRQAEAFDLFKRMR---LEGQKPSQYTLGSILRGCSALGLIQ 229

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G+ IH +++ NG + +  + + LV++Y KC   + A                 L  G A
Sbjct: 230 KGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEA---------------EILFKGLA 274

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
                      F++    + V+W +M++GY  N +D +A+  F  M   GV  +  T  S
Sbjct: 275 -----------FNK---GNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPS 320

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L+ACSS+     G+QVHG   + G   +  V SAL+D Y+K                  
Sbjct: 321 ILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAK------------------ 362

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
                        CG +  AK +   M +  ++SWNSMIVG  ++G   EA+ LF  M+ 
Sbjct: 363 -------------CGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHA 409

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
            ++++D ++  SV++ C  I     G+ V   V   G ++ +++S +LVD Y K
Sbjct: 410 RNMKIDHYTFPSVLNCC--IVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAK 461



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 229/496 (46%), Gaps = 86/496 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L+ C+    I  G+ +H + +K G  ++   +A  L+ MY +C + ++A +LF  +
Sbjct: 215 LGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAG-LVDMYAKCRHISEAEILFKGL 273

Query: 68  P--RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSW--------------- 106
              + N   W AM+ G+ + G   K+++ F  M     + N F++               
Sbjct: 274 AFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCF 333

Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                               + L+  +AK G+L +A+ +  +M   + ++WNSMI   VR
Sbjct: 334 GEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVR 393

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +GF  EA+ LFK++++     ++ D +   +V+  C  +     GK +H  ++  G +  
Sbjct: 394 HGFEEEAILLFKKMHA---RNMKIDHYTFPSVLNCC--IVGRIDGKSVHCLVIKTGFENY 448

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            ++ ++LV++Y K  D N A                     YA          VF++  +
Sbjct: 449 KLVSNALVDMYAKTEDLNCA---------------------YA----------VFEKMFE 477

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              + W S+++GY  N    E+L  F  MR +GV  D   +AS+LSAC+ L  LE GKQV
Sbjct: 478 KDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQV 537

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H    K+G+   + V ++L+  Y+K G   DA  +F  + V D I    +I  Y+  G+ 
Sbjct: 538 HSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKG 597

Query: 387 EDAKHIFRTMPNKSLIS-----WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
            D+   F+ M     I      +  MI    + G   EA ++   +N++D++ D     +
Sbjct: 598 RDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEI---LNQMDVKPDATVWKA 654

Query: 442 VISACANISSLELGEQ 457
           +++AC    +LELGE+
Sbjct: 655 LLAACRVHGNLELGER 670



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 150/298 (50%), Gaps = 47/298 (15%)

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
           Y    HS+ L+NGL               K G  + A ++ + M + D++  + ++SGYA
Sbjct: 112 YQSIFHSNQLLNGLS--------------KSGQIDDARELFDKMLQRDEYTWNTMVSGYA 157

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
           N G++ +AR +F+  +  SS+ W+S+ISGY       EA  LF +MR  G      TL S
Sbjct: 158 NVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGS 217

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L  CS+LG ++ G+ +HG+  K G   +V V + L+D Y+K                  
Sbjct: 218 ILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAK------------------ 259

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMP-NK-SLISWNSMIVGLSQNGSPIEALDLFCNM 427
                        C  I +A+ +F+ +  NK + + W +M+ G +QNG   +A++ F  M
Sbjct: 260 -------------CRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYM 306

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +   +  ++F+  S+++AC+++S+   GEQV   +   G   +  + ++LVD Y KCG
Sbjct: 307 HTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCG 364



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%)

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           ++ LL+  SK G   DA +LF ++   D    NTM++ Y++ GR+ +A+ +F    ++S 
Sbjct: 118 SNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSS 177

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           I+W+S+I G  + G   EA DLF  M     +  +++L S++  C+ +  ++ GE +   
Sbjct: 178 ITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGY 237

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           V   G +S+  +   LVD Y KC  I   E
Sbjct: 238 VVKNGFESNVYVVAGLVDMYAKCRHISEAE 267


>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
 gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
          Length = 833

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 226/523 (43%), Gaps = 98/523 (18%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           R+ +LA LL++C++   +  GKQ+H       +L S +P+AN ++ MY +C     A+ +
Sbjct: 99  RVTFLA-LLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAV 157

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSWNM--------- 108
           F EM  R+  SWN  I    + G         KS+QL  + P K  F   +         
Sbjct: 158 FSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSL 217

Query: 109 ------------------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                                   L++ + + G L++AR +F+ MP RN ++WN+M+   
Sbjct: 218 SNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASC 277

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
             N    EA+ LFK + +  +      +FI  TV+ A     AL  G++IH+ I    L 
Sbjct: 278 TLNAHFAEAIELFKRMVAVAMVEPTRVSFI--TVLNAVTTPEALAEGRRIHAMIQERQLL 335

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
               + ++LV +YG+CG    A +V + M+  D    +A+IS YA  G    AR V +  
Sbjct: 336 SQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGL---AREVVN-- 390

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                     LFH+MR   V  D  T    L AC+ +  L+ G+
Sbjct: 391 --------------------------LFHRMRAERVPPDRITFLMALDACAEIRDLDSGR 424

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            VH  + + G    + VA+A +  YS     S +     E+                   
Sbjct: 425 TVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEV------------------- 465

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
                  IF +M  + +ISWN+MI G  Q G    AL +F  M    +R ++ +  S++S
Sbjct: 466 ----VAGIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLS 521

Query: 445 ACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDFYCKCG 485
            C + + L  GE +  RV      L SD I++ ++V+ Y KCG
Sbjct: 522 VCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCG 564



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 233/542 (42%), Gaps = 117/542 (21%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR+ ++  +L +  T  ++  G+++H    ++ +L S + +AN L+ MY RCG   DA  
Sbjct: 302 TRVSFIT-VLNAVTTPEALAEGRRIHAMIQERQLL-SQIEVANALVTMYGRCGGVGDAER 359

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGE 118
           +F  M RR+  SWNAMI  + + G   + + LF+ M  +    +  ++ M +   A+  +
Sbjct: 360 VFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRD 419

Query: 119 LKTART-------------------------------------------LFNDMPRRNAI 135
           L + RT                                           +F  M  R+ I
Sbjct: 420 LDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESMAARDVI 479

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           +WN+MI  YV+ G +  A+ +FK +   L+E ++ +     +++  C   A L  G+ IH
Sbjct: 480 SWNTMITGYVQAGDSFSALSIFKRM---LLEGIRGNQVTFMSLLSVCDSRAFLRQGETIH 536

Query: 196 SHIL--VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
             ++     L  D ++ +++VN+YGK                               CG+
Sbjct: 537 RRVINQTPELSSDPIVAAAIVNMYGK-------------------------------CGE 565

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           ++ AR +F+ T+  +   WNSMIS Y  +    +A  L  +MRR GVL D  T  ++L+A
Sbjct: 566 LDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNA 625

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           C + G + HGK +H      G+  D +VA+AL++ YSK G    A  LF  L   D    
Sbjct: 626 CVAGGAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRD---- 681

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
                                      ++SWN +I G + NG   EAL     M +  +R
Sbjct: 682 ---------------------------VVSWNGIIAGFAHNGHAREALKSMWLMQQDGVR 714

Query: 434 MDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEY 492
            D  +  +++SA ++   L  G   F  + +   L+        ++D   + G I   EY
Sbjct: 715 PDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGDAEY 774

Query: 493 YL 494
           ++
Sbjct: 775 FV 776



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 213/491 (43%), Gaps = 107/491 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           ARL+++C    ++  G+++H H +++   + +L   NRL+ MY RC +  +A  +FD M 
Sbjct: 2   ARLMRACGISGALEQGRRVHGH-VQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMR 60

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF------------------ 104
            R+  SW AMI  + + GH+ ++L LF  M      P +  F                  
Sbjct: 61  ERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQ 120

Query: 105 ----------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N ++  + K      A  +F++M  R+ I+WN+ I     +G
Sbjct: 121 IHARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAANAESG 180

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
                + L K +    +E +  D     + + AC    +L  G+ IH+ +L  G++ D V
Sbjct: 181 DYTFTLALLKSMQ---LEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVV 237

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG++LV +YG+                               CG +  AR +F R  + +
Sbjct: 238 LGTALVTMYGR-------------------------------CGCLESAREIFHRMPERN 266

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVH 327
            V WN+M++    N    EA+ LF +M    ++E    +  +VL+A ++   L  G+++H
Sbjct: 267 VVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIH 326

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
                           A++             +L S+++V      N ++T+Y  CG + 
Sbjct: 327 ----------------AMIQER----------QLLSQIEV-----ANALVTMYGRCGGVG 355

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           DA+ +F  M  + L+SWN+MI   +Q+G   E ++LF  M    +  D+ +    + ACA
Sbjct: 356 DAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACA 415

Query: 448 NISSLELGEQV 458
            I  L+ G  V
Sbjct: 416 EIRDLDSGRTV 426



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 186/462 (40%), Gaps = 116/462 (25%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL- 62
           RI +L   L +C     +  G+ +H H   +    S + +AN  + +Y  C + + +   
Sbjct: 404 RITFLM-ALDACAEIRDLDSGRTVH-HLSVESGFGSCISVANATMHLYSSCSSSSSSSSS 461

Query: 63  -------LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------------- 96
                  +F+ M  R+  SWN MI G+++ G    +L +F                    
Sbjct: 462 LMEVVAGIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLS 521

Query: 97  -----------------VMPQKNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNA 134
                            V+ Q  + S + +++      + K GEL TAR LF D   RN 
Sbjct: 522 VCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNL 581

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
            +WNSMI  Y  +G A +A  L + +     E +  D     T++ AC    A+ +GK I
Sbjct: 582 ASWNSMISAYALHGRAEQAFDLSERMRR---EGVLPDRVTFITLLNACVAGGAVRHGKMI 638

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H+ I+ +GL+ D+V+ ++LVN Y                               + CG +
Sbjct: 639 HARIIDSGLEKDTVVANALVNFY-------------------------------SKCGNL 667

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           + A  +F        V WN +I+G+  N    EAL     M+++GV  DA T  ++LSA 
Sbjct: 668 DTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSAS 727

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           S  GFL  G             DD +  S  +D   +RG+    C               
Sbjct: 728 SHAGFLRQGG------------DDFV--SMAVDHELERGVEHYGC--------------- 758

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNG 415
            MI +    GRI DA++    M ++   +SW +++     +G
Sbjct: 759 -MIDLLGRAGRIGDAEYFVSAMRDEDKEVSWMTLLSACEVHG 799


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 206/425 (48%), Gaps = 47/425 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK-EKSLQLFNVMPQKND 103
           N+ +    R G+   A  +FD MPRR+  SWNA++    + G     +  LF+ MP +N 
Sbjct: 20  NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            SWN +I+G    G+L  A   F   PRRN  +WN+M+   VR G   +A  LF ++   
Sbjct: 80  ISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMP-- 137

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             ER       +   +  C ++A+    +++   +    L    V  +++++ Y      
Sbjct: 138 --ERNVVSYTTMVDGLARCGEVAS---ARELFDAMPTRNL----VSWAAMISGYVDNNML 188

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A ++   M E +    +A+I+GY   G + +ARR+FD       + WN++ISGY+ N 
Sbjct: 189 EEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNG 248

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              EA  L+  M R G+  D +TL ++L+ACSSL  L  G+  H            +V  
Sbjct: 249 LGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHA-----------VVIK 297

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           A+L++                       + N ++T+YS CG +++++ +F ++ ++ ++S
Sbjct: 298 AMLES--------------------SISICNALMTMYSKCGNVDESELVFMSLKSQDIVS 337

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI----SSLELGEQVF 459
           WN++I   +Q+G   + + LF  M    L  +  +  S++SAC +      SL+L + +F
Sbjct: 338 WNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMF 397

Query: 460 ARVTI 464
           ++  I
Sbjct: 398 SKYAI 402



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 139/310 (44%), Gaps = 32/310 (10%)

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK-MNDARRVFDRTTDTSSVMW 272
           +    + GD  +A +V + M   D    +AL++     G+ +  AR +FD     + + W
Sbjct: 23  ITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNVISW 82

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           NS+I+G +++ +   A   F +  R  V    ++  ++L+    LG +E  + +     +
Sbjct: 83  NSIIAGCLAHGDLAAASAYFARAPRRNV----ASWNAMLAGLVRLGSMEDARSLFDQMPE 138

Query: 333 VGVID---------------------------DVIVASALLDTYSKRGMPSDACKLFSEL 365
             V+                            +++  +A++  Y    M  +A KLF  +
Sbjct: 139 RNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAM 198

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
              + +    MIT Y   G +++A+ +F  +  K +ISWN++I G   NG   EA  L+ 
Sbjct: 199 PEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYI 258

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            M +  ++ D+ +L ++++AC++++ L  G    A V    L+S   I  +L+  Y KCG
Sbjct: 259 IMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCG 318

Query: 486 FIKMDEYYLM 495
            +   E   M
Sbjct: 319 NVDESELVFM 328



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 19/238 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LL +C++   +  G+  H   +K  +L S++ I N L+ MY +CGN  ++ L+F  +
Sbjct: 272 LIALLTACSSLALLRQGRSTHAVVIK-AMLESSISICNALMTMYSKCGNVDESELVFMSL 330

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             ++  SWN +I  + + G  +K + LF+ M       ND ++  ++S    AG +  + 
Sbjct: 331 KSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESL 390

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF+ M  + AI+     +  ++    R G   +A    KE+ S      + +  +  T+
Sbjct: 391 KLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPS------EAEKNVWGTL 444

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           + A      ++ G+     ++++  DF+S     ++ N+Y   G +   N+V + MKE
Sbjct: 445 LCASQTHGNVQLGELAAKMLVLS--DFESSGAYVMLSNIYAAAGMWGEVNRVRSQMKE 500


>gi|125564403|gb|EAZ09783.1| hypothetical protein OsI_32071 [Oryza sativa Indica Group]
          Length = 628

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 212/461 (45%), Gaps = 71/461 (15%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           + LP+ N L+ MY +C    DA   F EMP RN  SW +++  F+  GH E + +LF+ M
Sbjct: 107 APLPVGNALVSMYAKCARAADAARAFREMPERNALSWCSLLHAFVVSGHMELAHELFDEM 166

Query: 99  PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           P K++ +WN L+ G +++G  K    LFN M       W S                   
Sbjct: 167 PSKSNVAWNTLLMGHSRSGNAKQCLALFNQM-------WMS------------------- 200

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
                    L CD   L  ++ ACA+L     G  IH  ++ +G +    + +SL++ Y 
Sbjct: 201 --------GLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYT 252

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K    + A Q+   MK       ++LI  +A  G +  A  +F+   +T+ + W +MI G
Sbjct: 253 KFSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGG 312

Query: 279 YISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           +  N   +EAL  F KM  +  +  D  T  +VL AC+S   L  G+ VH  A + G   
Sbjct: 313 FARNGLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFAS 372

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            + VA+ L+D Y+K                               CG +E A ++F  + 
Sbjct: 373 YLYVANNLVDMYAK-------------------------------CGDVEGANNVFDAIH 401

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            K L+SWN+M+ G + NG P EAL+++  M   ++  D+ +   +++AC++   LE G  
Sbjct: 402 QKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRA 461

Query: 458 VF-ARVTIIGLDSDQIISTSLVDFYCKCG----FIKMDEYY 493
            F + +++ G+       + ++D Y + G     I+M E Y
Sbjct: 462 FFESMMSVHGVQPKPEHLSCVLDMYARSGNIAKAIEMMEQY 502



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 183/365 (50%), Gaps = 8/365 (2%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ MPRR+A+AWN+M+  Y R    R A+ LF  + +        DAF L   + A A 
Sbjct: 34  VFDAMPRRDAVAWNAMLTAYARAARPRAALALFARMRAP-------DAFSLTAALAAAAA 86

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +   G Q+H  +L  GL     +G++LV++Y KC     A +    M E +     +L
Sbjct: 87  LRSPAAGAQLHGRLLRLGLRAPLPVGNALVSMYAKCARAADAARAFREMPERNALSWCSL 146

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  +   G M  A  +FD     S+V WN+++ G+  +    + L LF++M  +G+  D 
Sbjct: 147 LHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDD 206

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           +TL  ++ AC+ L     G  +H    + G      V ++L+  Y+K  +   A ++F  
Sbjct: 207 ATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFES 266

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +K   T   N++I  ++  G IE A  +F + P  ++ISW +MI G ++NG   EAL  F
Sbjct: 267 MKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNGLTSEALAHF 326

Query: 425 CNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
             M  +  ++ D F+  +V+ ACA+   L  G  V +     G  S   ++ +LVD Y K
Sbjct: 327 VKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAK 386

Query: 484 CGFIK 488
           CG ++
Sbjct: 387 CGDVE 391


>gi|222624689|gb|EEE58821.1| hypothetical protein OsJ_10390 [Oryza sativa Japonica Group]
          Length = 890

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 176/349 (50%), Gaps = 44/349 (12%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-------- 170
           +++AR +F++MPRR+ ++WNS+I    R G+ RE + LF+E       R++C        
Sbjct: 1   MRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFV-----RVRCSDGDGVGP 55

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           +   + +V+ ACA L  +++G  +H     +GLD D  + +S++  Y KCG    A Q+L
Sbjct: 56  NGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLL 115

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
           + M   D    SA+I+GY N G + +  ++F + +     MWNS+I+G + N   ++ L 
Sbjct: 116 DGMTRKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLR 175

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           L  +M  + VL +++TL+ V+ +  S   L   KQ HG+A +      + + SAL+D Y+
Sbjct: 176 LLQEMIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYA 235

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G                                ++ A+ +F+   ++S I W S+I  
Sbjct: 236 KAGF-------------------------------LDTARKVFKLTEHRSTIVWTSIISA 264

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           ++ +G  +EAL LF  M     + D  +  +V+SACA+   +    +VF
Sbjct: 265 VAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEARKVF 313



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 164/390 (42%), Gaps = 78/390 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C     +  G  +H  F  +  L+  + + N ++  Y +CG    A  L D M R+
Sbjct: 63  VLHACAQLKVVDFGIGVH-RFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRK 121

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S++AMI G+M  GH E+ +QLF     +    WN +I+G                  
Sbjct: 122 DSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGL----------------- 164

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
                         V+NG   + +RL +E+   +  ++  ++  L+ V+ +    + L  
Sbjct: 165 --------------VQNGRQSDVLRLLQEM---IASKVLPNSATLSIVMPSVPSFSTLLG 207

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            KQ H + + N  D    L S+L++ Y K G  ++                         
Sbjct: 208 AKQAHGYAIRNDYDQSIRLVSALIDAYAKAGFLDT------------------------- 242

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                 AR+VF  T   S+++W S+IS   ++ E  EAL LF++M   G   D  T  +V
Sbjct: 243 ------ARKVFKLTEHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTV 296

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSEL---- 365
           LSAC+  G +   ++V      V  I  VI   A ++   S+ GM  +A KL +++    
Sbjct: 297 LSACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMPFEP 356

Query: 366 --KVYDTILLNTMITVYSSCGRIEDAKHIF 393
             KV+  +L    +      G +E  ++ F
Sbjct: 357 NAKVWGALLNGAAVV-----GDVEFGRYAF 381



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR------NGVLEDASTL 307
           M  AR VFD       V WNS+IS         E L LF +  R      +GV  +  T+
Sbjct: 1   MRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTV 60

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SVL AC+ L  ++ G  VH  A + G+  D+ V ++++  Y+K G    A +L   +  
Sbjct: 61  TSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTR 120

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D+I  + MIT Y + G +E+   +FR    + +  WNS+I GL QNG   + L L   M
Sbjct: 121 KDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQEM 180

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCG 485
               +  +  +L+ V+ +  + S+L   +Q       I  D DQ I   ++L+D Y K G
Sbjct: 181 IASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYA--IRNDYDQSIRLVSALIDAYAKAG 238

Query: 486 FI 487
           F+
Sbjct: 239 FL 240



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 106/237 (44%), Gaps = 21/237 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ ++ S  +  ++   KQ H + ++    + ++ + + L+  Y + G    A  +F   
Sbjct: 192 LSIVMPSVPSFSTLLGAKQAHGYAIRND-YDQSIRLVSALIDAYAKAGFLDTARKVFKLT 250

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             R+   W ++I      G   ++L LFN M     + +  ++  ++S  A +G++  AR
Sbjct: 251 EHRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGAKPDTVTFTTVLSACAHSGKVAEAR 310

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            +FN M     I+     +  M+    R G  +EAV+L  ++        + +A +   +
Sbjct: 311 KVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAVKLVNKMP------FEPNAKVWGAL 364

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV--NLYGKCGDFNSANQVLNMM 233
           +   A +  +E+G+     + V  ++  +  G+ +V  NLY   G +  A  + +M+
Sbjct: 365 LNGAAVVGDVEFGRYAFDRLFV--IEPKNT-GNYIVMANLYSNAGKWEEAETIRSML 418


>gi|52076160|dbj|BAD46673.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 678

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 213/461 (46%), Gaps = 71/461 (15%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           + LP+ N L+ MY +C    DA   F EMP RN  SW +++  F+  GH E + +LF+ M
Sbjct: 157 APLPVGNALVSMYAKCARAADAARAFREMPERNALSWCSLLHAFVVSGHMELAHELFDEM 216

Query: 99  PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           P K++ +WN L+ G +++G  K    LFN M       W S                   
Sbjct: 217 PSKSNVAWNTLLMGHSRSGNAKQCLALFNQM-------WMS------------------- 250

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
                    L CD   L  ++ ACA+L     G  IH  ++ +G +    + +SL++ Y 
Sbjct: 251 --------GLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYT 302

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           K    + A Q+   MK       ++LI  +A  G +  A  +F+   +T+ + W +MI G
Sbjct: 303 KFSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGG 362

Query: 279 YISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           +  N+  +EAL  F KM  +  +  D  T  +VL AC+S   L  G+ VH  A + G   
Sbjct: 363 FARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFAS 422

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
            + VA+ L+D Y+K                               CG +E A ++F  + 
Sbjct: 423 YLYVANNLVDMYAK-------------------------------CGDVEGANNVFDAIH 451

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            K L+SWN+M+ G + NG P EAL+++  M   ++  D+ +   +++AC++   LE G  
Sbjct: 452 QKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRA 511

Query: 458 VF-ARVTIIGLDSDQIISTSLVDFYCKCG----FIKMDEYY 493
            F + +++ G+       + ++D Y + G     I+M E Y
Sbjct: 512 FFESMMSVHGVQPKPEHLSCVLDMYARSGNIAKAIEMMEQY 552



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 182/365 (49%), Gaps = 8/365 (2%)

Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
           +F+ MPRR+A+AWN+M+  Y R    R A+ LF  + +        DAF L   + A A 
Sbjct: 84  VFDAMPRRDAVAWNAMLTAYARAARPRAALALFARMRAP-------DAFSLTAALAAAAA 136

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
           L +   G Q+H  +L  GL     +G++LV++Y KC     A +    M E +     +L
Sbjct: 137 LRSPAAGAQLHGRLLRLGLRAPLPVGNALVSMYAKCARAADAARAFREMPERNALSWCSL 196

Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +  +   G M  A  +FD     S+V WN+++ G+  +    + L LF++M  +G+  D 
Sbjct: 197 LHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDD 256

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           +TL  ++ AC+ L     G  +H    + G      V ++L+  Y+K  +   A ++F  
Sbjct: 257 ATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFES 316

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +K   T   N++I  ++  G IE A  +F + P  ++ISW +MI G ++N    EAL  F
Sbjct: 317 MKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHF 376

Query: 425 CNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
             M  +  ++ D F+  +V+ ACA+   L  G  V +     G  S   ++ +LVD Y K
Sbjct: 377 VKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAK 436

Query: 484 CGFIK 488
           CG ++
Sbjct: 437 CGDVE 441


>gi|255581962|ref|XP_002531779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528572|gb|EEF30593.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 518

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 195/386 (50%), Gaps = 45/386 (11%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KAGELKTARTLFNDMPRRNA 134
           N +I  F++ G  + +L+LFN M  K   +WN +++G++ K G++K AR LF+ +P  + 
Sbjct: 91  NQVITSFIRSGDLDSALELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELFDKIPEPDT 150

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           I++N+M+ CYV N    +A   F     DL+     D     T+I   +     + GK  
Sbjct: 151 ISYNTMLACYVHNSDMEKAQAFF-----DLIPNK--DPASWNTLISGFS-----QNGKMA 198

Query: 195 HSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
            +H L   + + +V+  +++++ Y  CGD  SA ++   M   +    +A+I+GY   G 
Sbjct: 199 KAHKLFLQMPYKNVVTWNAMISGYIACGDLTSAWKLFKTMPVKNVVACTAMITGYMKLGF 258

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           +  A ++F   +  + V WN+MISG+I N+   + + LF  M   G+  + STL+S+L  
Sbjct: 259 IKLAEKLFKEMSTDNVVTWNAMISGFIENSRAEDGVKLFRTMVGFGIRPNPSTLSSLLLG 318

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           CS L  L+ G+QVH   CK  +  D+   ++L                            
Sbjct: 319 CSELSALQLGRQVHQLVCKSPLASDMTAGTSL---------------------------- 350

Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
              +++Y  CG +EDA  +F  +P K +++WN+MI G + +G+  +AL LF  M K  + 
Sbjct: 351 ---VSMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMKKEGIT 407

Query: 434 MDKFSLASVISACANISSLELGEQVF 459
            D  +  +V+ AC +    +LG + F
Sbjct: 408 PDWITFVAVLLACNHAGFADLGLKYF 433



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 60/317 (18%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +L  Y+   +   A   FD +P ++  SWN +I GF + G   K+ +LF  MP KN  
Sbjct: 154 NTMLACYVHNSDMEKAQAFFDLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVV 213

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           +WN +ISG+   G+L +A  LF  MP +N +A  +MI  Y++ GF + A +LFKE+++D 
Sbjct: 214 TWNAMISGYIACGDLTSAWKLFKTMPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDN 273

Query: 165 V-------------ERLQCDAFILATVIG---------------ACADLAALEYGKQIHS 196
           V              R +    +  T++G                C++L+AL+ G+Q+H 
Sbjct: 274 VVTWNAMISGFIENSRAEDGVKLFRTMVGFGIRPNPSTLSSLLLGCSELSALQLGRQVHQ 333

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            +  + L  D   G+SLV++Y KCGD   A ++   +   D    +A+ISGYA  G    
Sbjct: 334 LVCKSPLASDMTAGTSLVSMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEK 393

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A R+FD                               +M++ G+  D  T  +VL AC+ 
Sbjct: 394 ALRLFD-------------------------------EMKKEGITPDWITFVAVLLACNH 422

Query: 317 LGFLEHG-KQVHGHACK 332
            GF + G K  H  A +
Sbjct: 423 AGFADLGLKYFHSMAPR 439



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 151/282 (53%), Gaps = 11/282 (3%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC-GKMNDARRVFDRT 264
           D +L + ++  + + GD +SA ++ N M        +++++GY+   GKM +AR +FD+ 
Sbjct: 86  DVILSNQVITSFIRSGDLDSALELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELFDKI 145

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            +  ++ +N+M++ Y+ +N D E    F  +  N   +D ++  +++S     GF ++GK
Sbjct: 146 PEPDTISYNTMLACYV-HNSDMEKAQAFFDLIPN---KDPASWNTLIS-----GFSQNGK 196

Query: 325 QVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
               H   + +   +V+  +A++  Y   G  + A KLF  + V + +    MIT Y   
Sbjct: 197 MAKAHKLFLQMPYKNVVTWNAMISGYIACGDLTSAWKLFKTMPVKNVVACTAMITGYMKL 256

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G I+ A+ +F+ M   ++++WN+MI G  +N    + + LF  M    +R +  +L+S++
Sbjct: 257 GFIKLAEKLFKEMSTDNVVTWNAMISGFIENSRAEDGVKLFRTMVGFGIRPNPSTLSSLL 316

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             C+ +S+L+LG QV   V    L SD    TSLV  YCKCG
Sbjct: 317 LGCSELSALQLGRQVHQLVCKSPLASDMTAGTSLVSMYCKCG 358



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 335 VIDDVIVASALLDTYS-KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
            I   +  +++L  YS KRG   +A +LF ++   DTI  NTM+  Y     +E A+  F
Sbjct: 114 TIKTTVTWNSILAGYSRKRGKMKNARELFDKIPEPDTISYNTMLACYVHNSDMEKAQAFF 173

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             +PNK   SWN++I G SQNG   +A  LF  M   ++      ++  I AC +++S  
Sbjct: 174 DLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVVTWNAMISGYI-ACGDLTS-- 230

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
              ++F  + +     + +  T+++  Y K GFIK+ E
Sbjct: 231 -AWKLFKTMPV----KNVVACTAMITGYMKLGFIKLAE 263



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS-QNGSPIEALDLF 424
           KV D IL N +IT +   G ++ A  +F  M  K+ ++WNS++ G S + G    A +LF
Sbjct: 83  KVNDVILSNQVITSFIRSGDLDSALELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELF 142

Query: 425 CNMNKLD 431
             + + D
Sbjct: 143 DKIPEPD 149


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 208/427 (48%), Gaps = 71/427 (16%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C    +   G Q+H H +K+G L+  + I +  +QMY   G    A  +  E    
Sbjct: 136 LFKACTAAEAAEEGVQVHAHVIKQG-LSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNS 194

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +   +NAMI+G++K G  E + +LF  M  KN  SWN+++SG AK G ++ AR LFN+M 
Sbjct: 195 DVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMK 254

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            +N I+W++MI  Y++ G+ +EA+ +F  +     E ++   F+L++V+ ACA+L AL+ 
Sbjct: 255 EKNEISWSAMIDGYIKGGYYKEALEVFNVMQR---EEIRPRKFVLSSVLAACANLGALDQ 311

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ IH+++  N   FD+VLG++LV++Y KCG  + A  V   M++ + F  +A+I G   
Sbjct: 312 GRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGM 371

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            G+  D                               A+ LF KM++     +  TL  V
Sbjct: 372 HGRAED-------------------------------AIELFFKMQKQKFRPNGITLLGV 400

Query: 311 LSACSSLGFLEHG-------KQVHG-------HACKV---------GVIDDVI------- 340
           LSAC+  G ++ G       ++V+G       + C V         G  ++V+       
Sbjct: 401 LSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEP 460

Query: 341 ---VASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
              V  ALL    K G   +     K+  EL+  ++     +  +Y+  GR +D  ++ +
Sbjct: 461 SAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRK 520

Query: 395 TMPNKSL 401
            M  + +
Sbjct: 521 LMKERGV 527



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 182/405 (44%), Gaps = 66/405 (16%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A  +F  +P  N   +N +I   ++N    +A+  + ++   ++   + + F   T+
Sbjct: 80  LNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKM---MIAHARPNKFTYPTL 136

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
             AC    A E G Q+H+H++  GL  D  + S+ + +YG  G+   A ++L      D 
Sbjct: 137 FKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDV 196

Query: 239 FCLSALISGY-------------------------------ANCGKMNDARRVFDRTTDT 267
            C +A+I GY                               A CG + +AR +F+   + 
Sbjct: 197 ICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEK 256

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           + + W++MI GYI      EAL +F+ M+R  +      L+SVL+AC++LG L+ G+ +H
Sbjct: 257 NEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIH 316

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +        D ++ +AL+D Y+K                               CGR++
Sbjct: 317 AYVNNNSNSFDAVLGTALVDMYAK-------------------------------CGRLD 345

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A  +F  M  K + +WN+MI GL  +G   +A++LF  M K   R +  +L  V+SACA
Sbjct: 346 MAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACA 405

Query: 448 NISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           +   ++ G ++F  +  + G++        +VD   + G +   E
Sbjct: 406 HSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAE 450



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 33/286 (11%)

Query: 237 DDFCLSALISGYANC--GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           D +    L+  YAN     +N A +VF+   + +  ++N +I G + NNE  +A+  ++K
Sbjct: 61  DHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYK 120

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M       +  T  ++  AC++    E G QVH H  K G+  DV + SA +  Y   G 
Sbjct: 121 MMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGE 180

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ- 413
              A ++  E    D I  N MI  Y  CG +E AK +F +M +K++ SWN M+ G+++ 
Sbjct: 181 VEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKC 240

Query: 414 ------------------------------NGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
                                          G   EAL++F  M + ++R  KF L+SV+
Sbjct: 241 GMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVL 300

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +ACAN+ +L+ G  + A V       D ++ T+LVD Y KCG + M
Sbjct: 301 AACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDM 346


>gi|297841913|ref|XP_002888838.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334679|gb|EFH65097.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 688

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 131/516 (25%), Positives = 230/516 (44%), Gaps = 105/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL +C    S+  GKQ+H+H    G L S   I  +L+ MY  CG+  DA  +FDE    
Sbjct: 116 LLAACVRRKSLLHGKQVHVHIRING-LESNEFIRTKLVHMYTACGSVRDAQKVFDESTSS 174

Query: 71  NCFSWNAMIEGFMKLGHK--EKSLQLFNVMPQK----NDFSWNMLISGFA---------- 114
           N +SWNA++ G +  G K  +  L  F  M +     N +S++ +   FA          
Sbjct: 175 NVYSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSFSNVFKSFAGASALRQGLK 234

Query: 115 -------------------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                                    K G++  AR +F+++  R+ + W +MI     N  
Sbjct: 235 THALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKR 294

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             EA+ LF+ + S+  E +  ++ IL T++    D+ AL+ GK++H+H+L          
Sbjct: 295 QWEALGLFRSMISE--EGIYPNSVILTTILPVLGDVKALKLGKEVHAHVL---------- 342

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                             ++ N +++P  F  S LI  Y  CG M   RRVF  +   ++
Sbjct: 343 ------------------KMKNYLEQP--FVHSGLIDLYCKCGDMVSGRRVFYGSKQRNA 382

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W +++SGY +N    +AL     M++ G   D  T+A+VL  C+ L  ++ GK++H +
Sbjct: 383 ISWTALMSGYAANGRFDQALRSIVWMQQEGFKPDVVTIATVLPVCAELRAIKQGKEIHCY 442

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
           A K   + +V + ++L+  YSK G+P    +LF  L+  +      MI  Y   G +   
Sbjct: 443 ALKNLFLPNVSLVTSLMVMYSKCGVPEYPVRLFDRLEQRNVKAWTAMIDCYVENGDLRAG 502

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +FR+M    L+S +                           R D  ++  V++ C+++
Sbjct: 503 IEVFRSM----LLSKH---------------------------RPDSVTMGRVLTVCSDL 531

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +L+LG+++   +     +S   +S  ++  Y +CG
Sbjct: 532 KALKLGKELHGHILKKEFESIPFVSAKIIKMYGQCG 567



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 191/469 (40%), Gaps = 80/469 (17%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
           +D  +   + + +S     ++  G + H   +K G+ NS   +   L+ MY +CG    A
Sbjct: 209 VDLNVYSFSNVFKSFAGASALRQGLKTHALAIKNGLFNSVF-LKTSLVDMYFKCGKVGLA 267

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------------------------- 95
             +FDE+  R+   W AMI G      + ++L LF                         
Sbjct: 268 RRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRSMISEEGIYPNSVILTTILPVLGD 327

Query: 96  ------------NVMPQKN----DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                       +V+  KN     F  + LI  + K G++ + R +F    +RNAI+W +
Sbjct: 328 VKALKLGKEVHAHVLKMKNYLEQPFVHSGLIDLYCKCGDMVSGRRVFYGSKQRNAISWTA 387

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           ++  Y  NG   +A+R    +     E  + D   +ATV+  CA+L A++ GK+IH + L
Sbjct: 388 LMSGYAANGRFDQALRSIVWMQQ---EGFKPDVVTIATVLPVCAELRAIKQGKEIHCYAL 444

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
            N                               +  P+   +++L+  Y+ CG      R
Sbjct: 445 KN-------------------------------LFLPNVSLVTSLMVMYSKCGVPEYPVR 473

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           +FDR    +   W +MI  Y+ N +    + +F  M  +    D+ T+  VL+ CS L  
Sbjct: 474 LFDRLEQRNVKAWTAMIDCYVENGDLRAGIEVFRSMLLSKHRPDSVTMGRVLTVCSDLKA 533

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L+ GK++HGH  K        V++ ++  Y + G    A   F  + V  ++    +I  
Sbjct: 534 LKLGKELHGHILKKEFESIPFVSAKIIKMYGQCGDLRSANFSFDAVVVKGSLTWTAIIEA 593

Query: 380 YSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLF 424
           Y   GR  DA   F  M ++       ++ +++   SQ G   EA   F
Sbjct: 594 YGYNGRFRDAIKCFEQMVSRGFTPNTFTFTAILSICSQAGFADEAYRFF 642



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 69/362 (19%)

Query: 20  SIHVGKQLHLHFLK-KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
           ++ +GK++H H LK K  L     + + L+ +Y +CG+      +F    +RN  SW A+
Sbjct: 330 ALKLGKEVHAHVLKMKNYLEQPF-VHSGLIDLYCKCGDMVSGRRVFYGSKQRNAISWTAL 388

Query: 79  IEGFMKLGHKEKSLQLFNVMPQ----------------------------------KNDF 104
           + G+   G  +++L+    M Q                                  KN F
Sbjct: 389 MSGYAANGRFDQALRSIVWMQQEGFKPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLF 448

Query: 105 SWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
             N+     L+  ++K G  +    LF+ + +RN  AW +MI CYV NG  R  + +F+ 
Sbjct: 449 LPNVSLVTSLMVMYSKCGVPEYPVRLFDRLEQRNVKAWTAMIDCYVENGDLRAGIEVFRS 508

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +   L+ + + D+  +  V+  C+DL AL+ GK++H HIL    +    + + ++ +YG+
Sbjct: 509 M---LLSKHRPDSVTMGRVLTVCSDLKALKLGKELHGHILKKEFESIPFVSAKIIKMYGQ 565

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT-------------- 265
           CGD  SAN   + +        +A+I  Y   G+  DA + F++                
Sbjct: 566 CGDLRSANFSFDAVVVKGSLTWTAIIEAYGYNGRFRDAIKCFEQMVSRGFTPNTFTFTAI 625

Query: 266 ----------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
                     D +   +N M+  Y  +  +    L+   + R G +E+A  L  V+S+ S
Sbjct: 626 LSICSQAGFADEAYRFFNLMLRMYNLHPSEEHYSLVIELLNRFGRVEEAQRL-EVMSSSS 684

Query: 316 SL 317
           SL
Sbjct: 685 SL 686



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 66/322 (20%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           +  +A   + ++ AC    +L +GKQ+H HI +NGL+ +  + + LV++Y  CG    A 
Sbjct: 106 IPVNATTFSALLAACVRRKSLLHGKQVHVHIRINGLESNEFIRTKLVHMYTACGSVRDA- 164

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED-- 285
                                         ++VFD +T ++   WN+++ G + + +   
Sbjct: 165 ------------------------------QKVFDESTSSNVYSWNALLRGTVISGKKRY 194

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            + L  F +MR  GV  +  + ++V  + +    L  G + H  A K G+ + V + ++L
Sbjct: 195 QDVLSTFTEMRELGVDLNVYSFSNVFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSL 254

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y K                               CG++  A+ +F  +  + ++ W 
Sbjct: 255 VDMYFK-------------------------------CGKVGLARRVFDEIVERDIVVWG 283

Query: 406 SMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           +MI GL+ N    EAL LF +M ++  +  +   L +++    ++ +L+LG++V A V  
Sbjct: 284 AMIAGLAHNKRQWEALGLFRSMISEEGIYPNSVILTTILPVLGDVKALKLGKEVHAHVLK 343

Query: 465 IGLDSDQ-IISTSLVDFYCKCG 485
           +    +Q  + + L+D YCKCG
Sbjct: 344 MKNYLEQPFVHSGLIDLYCKCG 365



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 33/212 (15%)

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I  +   N   +AL +   + + G+  +A+T +++L+AC     L HGKQVH H    G+
Sbjct: 82  IQRFARKNNLEDALTILDYLEQRGIPVNATTFSALLAACVRRKSLLHGKQVHVHIRINGL 141

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             +  + + L+  Y                               ++CG + DA+ +F  
Sbjct: 142 ESNEFIRTKLVHMY-------------------------------TACGSVRDAQKVFDE 170

Query: 396 MPNKSLISWNSMIVGLSQNGSP--IEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
             + ++ SWN+++ G   +G     + L  F  M +L + ++ +S ++V  + A  S+L 
Sbjct: 171 STSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSFSNVFKSFAGASALR 230

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            G +  A     GL +   + TSLVD Y KCG
Sbjct: 231 QGLKTHALAIKNGLFNSVFLKTSLVDMYFKCG 262



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDE 66
           + R+L  C+   ++ +GK+LH H LKK     ++P ++ ++++MY +CG+   A   FD 
Sbjct: 521 MGRVLTVCSDLKALKLGKELHGHILKKEF--ESIPFVSAKIIKMYGQCGDLRSANFSFDA 578

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTA 122
           +  +   +W A+IE +   G    +++ F  M  +    N F++  ++S  ++AG    A
Sbjct: 579 VVVKGSLTWTAIIEAYGYNGRFRDAIKCFEQMVSRGFTPNTFTFTAILSICSQAGFADEA 638

Query: 123 RTLFNDMPR 131
              FN M R
Sbjct: 639 YRFFNLMLR 647



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%)

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           +AL +   + +  + ++  + +++++AC    SL  G+QV   + I GL+S++ I T LV
Sbjct: 93  DALTILDYLEQRGIPVNATTFSALLAACVRRKSLLHGKQVHVHIRINGLESNEFIRTKLV 152

Query: 479 DFYCKCGFIK 488
             Y  CG ++
Sbjct: 153 HMYTACGSVR 162


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 140/522 (26%), Positives = 230/522 (44%), Gaps = 111/522 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQ----MYMRCGNPTDALLLFDE 66
           LLQ C +  SI   KQ+H H +  G+L+S  P ++ LL      Y   G    A  LFDE
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSS--PYSHHLLSSLAAAYAMFGCAPHARKLFDE 81

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF-------------------------NVMPQ- 100
           +   + FSWNAMI  +   G    +L LF                          ++P+ 
Sbjct: 82  LRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEM 141

Query: 101 --------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
                          + F  N L++ +   GE++ AR +F+ M  R  ++WN+MI+ Y +
Sbjct: 142 GALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFK 201

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           NG  +EA+ +F  +    +E    D   + +V+  C+ L  LE G+++H+ + V  L  D
Sbjct: 202 NGCVKEALMVFDWMIGKGIEP---DCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGED 258

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             + +SL+++Y KC                               G M++A+ +F     
Sbjct: 259 ISVWNSLLDMYAKC-------------------------------GNMDEAQMIFYEMDK 287

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V W +M++GYI N +   ALLL   M+   V  +  TLASVLSAC+SL  L+HG+ +
Sbjct: 288 RDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCL 347

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           HG A +  +  +VIV +AL+D Y+K                               C  +
Sbjct: 348 HGWAIRQKLESEVIVETALIDMYAK-------------------------------CNNV 376

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
             +  +F     +    WN++I G   NG   +A++LF  M    +  +  +L S++ A 
Sbjct: 377 NLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAY 436

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           A ++ L+    +   +   G  S   ++T L+D Y KCG ++
Sbjct: 437 AFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLE 478



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 224/490 (45%), Gaps = 107/490 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C  +    +G  +H   +  G  +S   + N L+ MYM CG    A  +FD M  R
Sbjct: 129 VIKACGDYLLPEMGALIHARTVMSG-FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRER 187

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
              SWN MI G+ K G  +++L +F+ M  K                             
Sbjct: 188 TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVH 247

Query: 102 ---------NDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     D S WN L+  +AK G +  A+ +F +M +R+ ++W +M++ Y+ NG AR
Sbjct: 248 ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDAR 307

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
            A+ L + +     E ++ +   LA+V+ ACA L +L++G+ +H   +   L+ + ++ +
Sbjct: 308 SALLLCQMMQ---FESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVET 364

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L+++Y K                               C  +N + RVF +T+   +  
Sbjct: 365 ALIDMYAK-------------------------------CNNVNLSFRVFSKTSKQRTAP 393

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN++ISG I N    +A+ LF +M    V  + +TL S+L A + L  L+  + +HG+  
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G +  + VA+ L+D YSK                               CG +E A +
Sbjct: 454 RSGFLSRIEVATILIDIYSK-------------------------------CGSLESAHN 482

Query: 392 IFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           IF  +P  +K +I+W+++I G   +G    A+ LF  M +  ++ ++ +  S++ AC++ 
Sbjct: 483 IFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHA 542

Query: 450 SSLELGEQVF 459
             ++ G  +F
Sbjct: 543 GLVDEGLGLF 552



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 115/252 (45%), Gaps = 34/252 (13%)

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           LS+L + YA  G    AR++FD   + S   WN+MI  Y ++    +AL LF +M  +G 
Sbjct: 59  LSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGR 118

Query: 301 -LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
              D  T   V+ AC      E G  +H      G   D  V                  
Sbjct: 119 RWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQ----------------- 161

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                         N+++ +Y +CG +E A+ +F  M  ++L+SWN+MI G  +NG   E
Sbjct: 162 --------------NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKE 207

Query: 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           AL +F  M    +  D  ++ SV+  C+ +  LE+G +V A V +  L  D  +  SL+D
Sbjct: 208 ALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLD 267

Query: 480 FYCKCGFIKMDE 491
            Y KCG   MDE
Sbjct: 268 MYAKCG--NMDE 277



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 29/187 (15%)

Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
           +L   +   S+L  C+S   + + KQ+H H   +G++                       
Sbjct: 14  LLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSS--------------------- 52

Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
                   Y   LL+++   Y+  G    A+ +F  + N SL SWN+MI   + +G   +
Sbjct: 53  -------PYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYD 105

Query: 420 ALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           AL LF  M     R  D ++   VI AC +    E+G  + AR  + G DSD  +  SL+
Sbjct: 106 ALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLM 165

Query: 479 DFYCKCG 485
             Y  CG
Sbjct: 166 AMYMNCG 172


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 230/520 (44%), Gaps = 106/520 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ ++ SC       +G+Q+    +K G L S L + N L+ M+   GN   A  +F+++
Sbjct: 264 MSLVISSCGLLKDESLGRQIIGQVIKSG-LESKLAVENSLISMFGNMGNVDYANYIFNQI 322

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-------------------SW-- 106
             R+  SWN+++  + + GH E+S ++FN+M + +D                     W  
Sbjct: 323 SERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGR 382

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L+  +A AG  + A  +F  MP ++ I+WNS++  +V +G
Sbjct: 383 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDG 442

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +A+ +   L S +      +     + + AC      + G+ +H  ++V+GL  + +
Sbjct: 443 RSLDALGI---LCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQI 499

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++LV++YGK G  +++ +VL  M   D    +ALI GYA                   
Sbjct: 500 IGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAE------------------ 541

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVH 327
                        N +  +AL  F  +R  GV  +  T+ SVLSAC   G  LE GK +H
Sbjct: 542 -------------NEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLH 588

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +    G   D  V ++L                               IT+Y+ CG + 
Sbjct: 589 AYIVSAGFESDEHVKNSL-------------------------------ITMYAKCGDLS 617

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            ++ +F  + N+S+I+WN+++   + +G   E L L   M    L +D+FS +  +SA A
Sbjct: 618 SSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAA 677

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            ++ LE G+Q+      +G + D  I  +  D Y KCG I
Sbjct: 678 KLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEI 717



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 227/513 (44%), Gaps = 106/513 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ LH     KG++  ++   N L+ MY + G    A  LFD+MP RN  SWN M+ G +
Sbjct: 77  GRALHA-LCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIV 135

Query: 84  KLGHKEKSLQLFNVM------PQK--------------NDFSWNMLISGF-AKAGELKT- 121
           ++G   + ++ F  M      P                + F   + + GF AK+G L   
Sbjct: 136 RVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 195

Query: 122 ------------------ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                             +R +F +MP RN ++W S++  Y   G   E + ++K +  +
Sbjct: 196 YVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGE 255

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            VE   C+   ++ VI +C  L     G+QI   ++ +GL+    + +SL++++G     
Sbjct: 256 GVE---CNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFG----- 307

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                                     N G ++ A  +F++ ++  ++ WNS+++ Y  N 
Sbjct: 308 --------------------------NMGNVDYANYIFNQISERDTISWNSIVAAYAQNG 341

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              E+  +F+ MRR     +++T++++LS    +   + G+ +HG   K+G  D V+   
Sbjct: 342 HIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMG-FDSVVC-- 398

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
                                       + NT++ +Y+  GR E+A  +F+ MP K LIS
Sbjct: 399 ----------------------------VCNTLLRMYAGAGRSEEADLVFKQMPTKDLIS 430

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WNS++     +G  ++AL + C+M +    ++  +  S ++AC +    + G  +   V 
Sbjct: 431 WNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVV 490

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           + GL  +QII  +LV  Y K G +      L+Q
Sbjct: 491 VSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQ 523



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 199/467 (42%), Gaps = 110/467 (23%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+ +H   +K G  +S + + N LL+MY   G   +A L+F +MP ++  SWN+++  F+
Sbjct: 381 GRGIHGLVVKMG-FDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFV 439

Query: 84  KLGHKEKSLQLFNVM---------------------PQ------------------KNDF 104
             G    +L +   M                     P+                   N  
Sbjct: 440 NDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQI 499

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L+S + K G + T+R +   MPRR+ +AWN++I  Y  N    +A+  F+ L    
Sbjct: 500 IGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLR--- 556

Query: 165 VERLQCDAFILATVIGAC---ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           VE +  +   + +V+ AC    DL  LE GK +H++I+  G                   
Sbjct: 557 VEGVSANYITVVSVLSACLVPGDL--LERGKPLHAYIVSAGF------------------ 596

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                        E D+   ++LI+ YA CG ++ ++ +F+   + S + WN++++    
Sbjct: 597 -------------ESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAH 643

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           +    E L L  KMR  G+  D  + +  LSA + L  LE G+Q+HG A K+G   D  +
Sbjct: 644 HGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFI 703

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            +A  D YSK                               CG I +   +     N+SL
Sbjct: 704 FNAAADMYSK-------------------------------CGEIGEVVKMLPPSVNRSL 732

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
            SWN +I  L ++G   E  + F  M ++ ++    +  S+++AC++
Sbjct: 733 PSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSH 779


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 191/377 (50%), Gaps = 39/377 (10%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N L+  + K G +  A  LF++MP R+ ++W S++  + +    R  + +   + +   +
Sbjct: 42  NTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTH--D 99

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            LQ D F+ A ++ AC+ L  L  GKQ+H+  +++    D V+ SSL+++Y KCG  + A
Sbjct: 100 GLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDA 159

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             V + +   +    +++ISGYA  G+  +A  +F +    +   W ++ISG I +    
Sbjct: 160 RAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGI 219

Query: 287 EALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            +  LF++MRR G+ + D   L+SV+  C++L  LE GKQ+HG    +G    + +++AL
Sbjct: 220 YSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNAL 279

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D Y+K                               C  I  AK IF  MP K +ISW 
Sbjct: 280 VDMYAK-------------------------------CSDILAAKDIFYRMPRKDVISWT 308

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           S+IVG +Q+G   EAL L+  M    ++ ++ +   ++ AC++   +  G ++F  +T  
Sbjct: 309 SIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT-- 366

Query: 466 GLDSDQIISTSLVDFYC 482
              +D  I+ SL  + C
Sbjct: 367 ---TDYSINPSLQHYTC 380



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 158/319 (49%), Gaps = 37/319 (11%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA   +     ++HS I+  G D  S+L ++L+++YGKC                     
Sbjct: 13  CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKC--------------------- 51

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGV 300
                     G +  A ++FD   +   V W S+++ +         L + + M   +G+
Sbjct: 52  ----------GLIPQALQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGL 101

Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
             D    A ++ ACSSLG+L  GKQVH         DD +V S+L+D Y+K G P DA  
Sbjct: 102 QPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARA 161

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           +F  +   +++   +MI+ Y+  GR  +A  +F   P ++L SW ++I GL Q+G  I +
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYS 221

Query: 421 LDLFCNMNK--LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
             LF  M +  +D+ +D   L+SV+  CAN++ LELG+Q+   V  +G +S   IS +LV
Sbjct: 222 FSLFNEMRREGIDI-VDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALV 280

Query: 479 DFYCKCGFI--KMDEYYLM 495
           D Y KC  I    D +Y M
Sbjct: 281 DMYAKCSDILAAKDIFYRM 299



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 193/455 (42%), Gaps = 129/455 (28%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++++C++   + +GKQ+H  F+     +  + + + L+ MY +CG P DA  +FD +
Sbjct: 108 FACIVRACSSLGYLRLGKQVHARFMLSFFCDDEV-VKSSLIDMYTKCGQPDDARAVFDSI 166

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
             +N  SW +MI G+ + G K +++ LF   P +N FSW  LISG  ++G    + +LFN
Sbjct: 167 LFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFN 226

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M RR  I                           D+V     D  +L++V+G CA+LA 
Sbjct: 227 EM-RREGI---------------------------DIV-----DPLVLSSVVGGCANLAL 253

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           LE GKQIH  ++  G +    + ++LV++Y KC D  +A  +   M   D    +++I G
Sbjct: 254 LELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVG 313

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
            A  GK  +A  ++D            M+   I  NE                     T 
Sbjct: 314 TAQHGKAEEALTLYDE-----------MVLSRIKPNE--------------------VTF 342

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
             +L ACS  G +  G++                                          
Sbjct: 343 VGLLYACSHAGLVSRGRE------------------------------------------ 360

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
               L  +M T YS                N SL  +  ++  LS++G   EA +L   +
Sbjct: 361 ----LFRSMTTDYSI---------------NPSLQHYTCLLDLLSRSGHLDEAENL---L 398

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           +K+  + D+ + AS++SAC   ++LE+G ++  RV
Sbjct: 399 DKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRV 433


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 134/510 (26%), Positives = 221/510 (43%), Gaps = 116/510 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQ+H   L  G+  S L ++N L+ MY +CG+  +A   FD MP R+  SWNAMI  + 
Sbjct: 29  GKQIHARILSSGLGASVL-LSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYA 87

Query: 84  KLGHKEKSLQLF------NVMPQKNDFS-------------------------------- 105
           +    ++++QL+         P +  F+                                
Sbjct: 88  QHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQI 147

Query: 106 -WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LIS ++  G L  A  +F    R +   W ++I  Y R+G    A   + +++   
Sbjct: 148 VCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQ-- 205

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            E L+ +     TV+  C+ L  LE GK +H   L +GLDF   + +SL+++YGKC    
Sbjct: 206 -EGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCS--- 261

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                    + PD                  +AR VF R +  S + W++ I+ Y    +
Sbjct: 262 ---------RHPD------------------EAREVFLRISRPSVISWSAFIAAY---GQ 291

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             EA+  F  M   GV  +A+TL SVL AC+++G  E G+++H              A  
Sbjct: 292 HWEAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIH--------------ALV 337

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L   Y++                 +T +LN   ++Y+ C R+ DA  +F ++P K  +SW
Sbjct: 338 LAGPYTQ-----------------NTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSW 380

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA---------NISSLELG 455
           N+++   ++ G   +A+ L   M       D  +  +++ +C+         N  SL  G
Sbjct: 381 NAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDG 440

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            QV +++   GLD D  +   LV  Y +CG
Sbjct: 441 RQVHSQMISNGLDGDTYLGNLLVQMYGRCG 470



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 211/488 (43%), Gaps = 104/488 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+      S+  G+Q+H   +  G+   T  + N L+QMY RCG+  DA   F  + +R
Sbjct: 427 LLKQYGNSKSLTDGRQVHSQMISNGLDGDTY-LGNLLVQMYGRCGSLDDARAAFQGIHQR 485

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW-------------------- 106
           N FSW  +I   ++ G   + L+L   M     + N  ++                    
Sbjct: 486 NVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIH 545

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L++ +     L  AR +F  M  R+ ++W  +I  Y   G+  
Sbjct: 546 ERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPL 605

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA++L++ +  +     + DA  L +V+ ACA L AL  GK IH  I+ +G++ D  +G+
Sbjct: 606 EALQLYRRMEQEFS---RPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGT 662

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                                          A++S Y  C  + DAR+VFDR  D   V 
Sbjct: 663 -------------------------------AVVSFYGKCEAVEDARQVFDRILDKDIVC 691

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI  Y  N+ + +A  L+ +M  N +  +  TL ++L +CSS   +E G  +H  A 
Sbjct: 692 WNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHREAA 751

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G +    V +AL++ Y+K                               CG +E A+ 
Sbjct: 752 ARGYLSHTSVVNALINMYAK------------------------------CCGNLEAAQT 781

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
            F ++ +K+++SW+S++   ++NG    A +LF  MN+  +  +  +  SV+ AC++   
Sbjct: 782 AFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGL 841

Query: 452 LELGEQVF 459
            + G   F
Sbjct: 842 ADEGWSYF 849



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 209/525 (39%), Gaps = 114/525 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C T  +   G+++H   L  G       + N    +Y +C    DA  +F  +
Sbjct: 314 LTSVLRACATVGAHEQGRRIHALVLA-GPYTQNTTVLNAAASLYAKCSRVADASRVFSSI 372

Query: 68  PRRNCFSWNAMIEGFMKLG------HKEKSLQLFNVMPQK-------------------- 101
           P ++  SWNA++  + K G         + +Q+   +P                      
Sbjct: 373 PCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYG 432

Query: 102 ----------------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
                                 + +  N+L+  + + G L  AR  F  + +RN  +W  
Sbjct: 433 NSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTI 492

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           +I   V+NG A E + L K ++   +E  + +     +++GAC+    L  GK IH  I 
Sbjct: 493 LISLLVQNGEASEGLELLKSMD---LEGTEANKITFISLLGACSVTGDLSLGKTIHERIR 549

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
             GL+ D +                ++N +LNM               Y  C  +++AR 
Sbjct: 550 TKGLESDII----------------TSNALLNM---------------YTTCESLDEARL 578

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
           VF+R      V W  +IS Y       EAL L+ +M +     DA TL SVL AC+SL  
Sbjct: 579 VFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRA 638

Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
           L  GK +H      GV  DV V +A++  Y K     DA       +V+D IL       
Sbjct: 639 LVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDA------RQVFDRIL------- 685

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
                             +K ++ WN+MI   +QN    +A  L+  M +  +  +  +L
Sbjct: 686 ------------------DKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTL 727

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            +++ +C++   +E G  +       G  S   +  +L++ Y KC
Sbjct: 728 ITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKC 772



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/521 (24%), Positives = 221/521 (42%), Gaps = 108/521 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A LL +C     +  G+ LH HFL    ++  + + N L+ MY  CG+  DA  +F+  
Sbjct: 114 FASLLNACFASGDLKFGRMLHEHFLGTSFVSDQI-VCNGLISMYSDCGSLDDATAVFEWS 172

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------------- 102
            R +  +W  +I  + + G  E +   ++ M Q+                          
Sbjct: 173 FRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGK 232

Query: 103 -----------DFSWNM---LISGFAKAGE-LKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                      DFS  M   LIS + K       AR +F  + R + I+W++ I  Y   
Sbjct: 233 HVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAY--- 289

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA++ F+ +N   +E ++ +A  L +V+ ACA + A E G++IH+ +L      ++
Sbjct: 290 GQHWEAIKTFELMN---LEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNT 346

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + ++  +LY KC     A++V + +   D    +A++S YA  G   D           
Sbjct: 347 TVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRD----------- 395

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
                               A+ L  +M+  G + D  T  ++L +CS            
Sbjct: 396 --------------------AIFLSRQMQVEGFVPDDITFITILYSCSQ----------- 424

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY----DTILLNTMITVYSSC 383
                          SALL  Y      +D  ++ S++       DT L N ++ +Y  C
Sbjct: 425 ---------------SALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRC 469

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G ++DA+  F+ +  +++ SW  +I  L QNG   E L+L  +M+      +K +  S++
Sbjct: 470 GSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLL 529

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
            AC+    L LG+ +  R+   GL+SD I S +L++ Y  C
Sbjct: 530 GACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTC 570



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 135/320 (42%), Gaps = 62/320 (19%)

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           +E +  D   L   + ACA L     GKQIH+ IL +GL    +L +SLV +YGKCG   
Sbjct: 3   LEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVE 62

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A    + M E D      LIS                         WN+MI+ Y  +  
Sbjct: 63  EARNAFDRMPERD------LIS-------------------------WNAMITVYAQHEC 91

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             +A+ L+   R  G   D  T AS+L+AC + G L+ G+ +H H      + D IV + 
Sbjct: 92  GKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNG 151

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           L+                               ++YS CG ++DA  +F       + +W
Sbjct: 152 LI-------------------------------SMYSDCGSLDDATAVFEWSFRPDVCTW 180

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            ++I   +++G    A   +  M++  LR ++ +  +V+  C+++  LE G+ V      
Sbjct: 181 TTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALG 240

Query: 465 IGLDSDQIISTSLVDFYCKC 484
            GLD    +  SL+  Y KC
Sbjct: 241 SGLDFSLRMENSLISMYGKC 260



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 31/191 (16%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M   GV  D  TL + +SAC++LG    GKQ+H       ++   + AS LL        
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHAR-----ILSSGLGASVLLS------- 48

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                              N+++ +Y  CG +E+A++ F  MP + LISWN+MI   +Q+
Sbjct: 49  -------------------NSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQH 89

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               +A+ L+        + D+ + AS+++AC     L+ G  +          SDQI+ 
Sbjct: 90  ECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVC 149

Query: 475 TSLVDFYCKCG 485
             L+  Y  CG
Sbjct: 150 NGLISMYSDCG 160


>gi|302799100|ref|XP_002981309.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
 gi|300150849|gb|EFJ17497.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
          Length = 682

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 232/517 (44%), Gaps = 104/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR- 69
           +L  C     +  GK  H   L  G+ +S+  + N L+ MY +C N   A   FD M   
Sbjct: 64  ILDLCAATADLEQGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFDRMEHQ 123

Query: 70  ---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--------------------------- 99
              R+  +WN+++  F   G+ E++ +LF  M                            
Sbjct: 124 DHGRDVVTWNSLLAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCSGDRQGKLF 183

Query: 100 ---------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                    Q ++F  N L+  +A+ G L+ +R +F  + +++ I+WN MI    R G +
Sbjct: 184 HDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAIDQKDIISWNVMISLEARLGSS 243

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EAV L +E+  DL    + D     +V+ AC+ L  L+    I   +   G D D +LG
Sbjct: 244 EEAVELLREI--DLEGFPEPDEVTFISVVDACSCLGDLDLCFTIQELVSSAGFDDDLLLG 301

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +++VN++GK G                  CL A             AR  FDR    + V
Sbjct: 302 NAVVNMFGKSG------------------CLDA-------------ARATFDRLPVKNVV 330

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WN +ISGY  N +    L LF +M + GV  ++ T  S+L ACS++  L+ G+++H   
Sbjct: 331 SWNCLISGYAQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLRI 390

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G+    +VA+AL++ Y K       C+   EL+     L   ++  Y S G + D+ 
Sbjct: 391 TAAGLELHTVVATALINMYGK-------CQ---ELQ-----LAQELLERYQSTG-LRDS- 433

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                      ++WN++    +QNG P+EAL+LF  M +  +R  + +  +++ AC + S
Sbjct: 434 -----------VTWNAIAAAYAQNGHPLEALELFWRMQQQGVRAQEATFVTILDACGDSS 482

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           SL    +  A+++    D+   I  +L+  Y KCG +
Sbjct: 483 SLLAHGRSIAKLSSWTSDA---IKGALLGMYSKCGCV 516



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 229/526 (43%), Gaps = 118/526 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+SC+       GK  H   L  G+      + N L++MY RCG   ++ L+F  + ++
Sbjct: 170 VLESCSGDRQ---GKLFHDRVLDLGLQGDEF-LMNSLVKMYARCGRLEESRLVFRAIDQK 225

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSW------------------- 106
           +  SWN MI    +LG  E++++L   +     P+ ++ ++                   
Sbjct: 226 DIISWNVMISLEARLGSSEEAVELLREIDLEGFPEPDEVTFISVVDACSCLGDLDLCFTI 285

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N +++ F K+G L  AR  F+ +P +N ++WN +I  Y +N   
Sbjct: 286 QELVSSAGFDDDLLLGNAVVNMFGKSGCLDAARATFDRLPVKNVVSWNCLISGYAQNLQG 345

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           R  + LF++++    E ++ ++    +++ AC+ + AL++G+++H  I   GL+  +V+ 
Sbjct: 346 RRCLELFRQMDQ---EGVKANSVTFVSLLDACSTIPALDFGRELHLRITAAGLELHTVVA 402

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+N+YGKC +   A ++L                              +  T    SV
Sbjct: 403 TALINMYGKCQELQLAQELLER----------------------------YQSTGLRDSV 434

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS-SLGFLEHGKQVHGH 329
            WN++ + Y  N    EAL LF +M++ GV    +T  ++L AC  S   L HG+ +   
Sbjct: 435 TWNAIAAAYAQNGHPLEALELFWRMQQQGVRAQEATFVTILDACGDSSSLLAHGRSI--- 491

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
                         A L +++     SDA K               ++ +YS CG ++DA
Sbjct: 492 --------------AKLSSWT-----SDAIK-------------GALLGMYSKCGCVDDA 519

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
               +++ ++ L++W SM+   +  G   EAL +   M    +  D  + ++V+ AC++ 
Sbjct: 520 LAALQSLSSRGLLAWTSMLAAYAHVGRASEALRVLGQMQHDGVVPDDVAFSAVVFACSHA 579

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSL----VDFYCKCGFIKMDE 491
             L    +   R+  +  D    +   L    VD   + G ++  E
Sbjct: 580 GLL---HEALVRLAWVSGDYGTAMGAGLYECVVDVLARMGRLQEAE 622



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 204/490 (41%), Gaps = 113/490 (23%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----------- 98
           M+ +CG+   A  +F  + R N FSW  ++    + G   ++L L   M           
Sbjct: 1   MFGKCGDIEVAREIFHGLWRPNLFSWTMILAACARNGRNLEALLLVRRMIGEGARPDVVC 60

Query: 99  ---------------PQKNDFSW--------------NMLISGFAKAGELKTARTLFNDM 129
                            K   +W              N LI+ + K   L  AR  F+ M
Sbjct: 61  FVTILDLCAATADLEQGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFDRM 120

Query: 130 PR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
                 R+ + WNS++  +  NG+  EA RLF+E+    VE ++  +  L  V+ +C+  
Sbjct: 121 EHQDHGRDVVTWNSLLAAFTHNGYLEEAARLFQEME---VEGIKPSSVTLTCVLESCS-- 175

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
                GK  H  +L  GL                               + D+F +++L+
Sbjct: 176 -GDRQGKLFHDRVLDLGL-------------------------------QGDEFLMNSLV 203

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DA 304
             YA CG++ ++R VF        + WN MIS         EA+ L  ++   G  E D 
Sbjct: 204 KMYARCGRLEESRLVFRAIDQKDIISWNVMISLEARLGSSEEAVELLREIDLEGFPEPDE 263

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T  SV+ ACS LG L+    +       G  DD+++ +A+++ + K G           
Sbjct: 264 VTFISVVDACSCLGDLDLCFTIQELVSSAGFDDDLLLGNAVVNMFGKSGC---------- 313

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                                ++ A+  F  +P K+++SWN +I G +QN      L+LF
Sbjct: 314 ---------------------LDAARATFDRLPVKNVVSWNCLISGYAQNLQGRRCLELF 352

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M++  ++ +  +  S++ AC+ I +L+ G ++  R+T  GL+   +++T+L++ Y KC
Sbjct: 353 RQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLRITAAGLELHTVVATALINMYGKC 412

Query: 485 GFIKMDEYYL 494
             +++ +  L
Sbjct: 413 QELQLAQELL 422


>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 396

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 172/331 (51%), Gaps = 34/331 (10%)

Query: 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           +L  A  LF+ +P  +A  +N++I  Y+++     ++ L+  +   L   +  + F   +
Sbjct: 93  DLAYAIKLFDSIPNPDAFFYNTIIKAYLQHLSPTNSILLYSHM---LQHSVFPNDFTFPS 149

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           VI AC     ++ GKQIH+H+L  G     +  ++L+++Y +   F  A  VL  M E +
Sbjct: 150 VIRACCIHDDIQLGKQIHAHVLKLGFGAHVISLNNLIHMYARFQAFEEARCVLYSMPEQN 209

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
               + LISGY+  G +++A RVF    + +S  WN+MI+ Y+  N   E+  LF +MR 
Sbjct: 210 FISWTTLISGYSQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFALFDRMRA 269

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
            GV+ D    A++LSAC+ LG LE GK +HG+  K G+  D  +A+A++D Y K      
Sbjct: 270 EGVVLDKFVAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCK------ 323

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                                    CG +E A  +F+ +P+K + SWN MI GL+ +G  
Sbjct: 324 -------------------------CGSLEKALEVFKGLPHKGISSWNCMIGGLAMHGKG 358

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACAN 448
             A++LF  M K  L  D+ +  +++SACA+
Sbjct: 359 EAAIELFKEMEKEMLAPDRITFVNLLSACAH 389



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 140/262 (53%), Gaps = 4/262 (1%)

Query: 227 NQVLNMMKEPDDFCLSALI--SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
           +Q++ +    D   ++ LI  S  +N   +  A ++FD   +  +  +N++I  Y+ +  
Sbjct: 65  SQIIRLGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYNTIIKAYLQHLS 124

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
            T ++LL+  M ++ V  +  T  SV+ AC     ++ GKQ+H H  K+G    VI  + 
Sbjct: 125 PTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKLGFGAHVISLNN 184

Query: 345 LLDTYSK-RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
           L+  Y++ +      C L+S +   + I   T+I+ YS  G +++A  +F++MP ++  S
Sbjct: 185 LIHMYARFQAFEEARCVLYS-MPEQNFISWTTLISGYSQWGLVDEAFRVFQSMPERNSAS 243

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WN+MI    Q     E+  LF  M    + +DKF  A+++SAC  + +LE G+ +   + 
Sbjct: 244 WNAMIAAYVQGNRFHESFALFDRMRAEGVVLDKFVAATMLSACTGLGALEQGKWIHGYIE 303

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
             G++ D  ++T+++D YCKCG
Sbjct: 304 KKGIEKDSKLATAIIDMYCKCG 325



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 133/305 (43%), Gaps = 66/305 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++++C  H  I +GKQ+H H LK G     + + N L+ MY R          F      
Sbjct: 150 VIRACCIHDDIQLGKQIHAHVLKLGFGAHVISL-NNLIHMYAR----------FQAFEEA 198

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
            C  ++                     MP++N  SW  LISG+++ G +  A  +F  MP
Sbjct: 199 RCVLYS---------------------MPEQNFISWTTLISGYSQWGLVDEAFRVFQSMP 237

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            RN+ +WN+MI  YV+     E+  LF  + +   E +  D F+ AT++ AC  L ALE 
Sbjct: 238 ERNSASWNAMIAAYVQGNRFHESFALFDRMRA---EGVVLDKFVAATMLSACTGLGALEQ 294

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GK IH +I   G++ DS L ++++++Y KCG                             
Sbjct: 295 GKWIHGYIEKKGIEKDSKLATAIIDMYCKCGS---------------------------- 326

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
              +  A  VF          WN MI G   + +   A+ LF +M +  +  D  T  ++
Sbjct: 327 ---LEKALEVFKGLPHKGISSWNCMIGGLAMHGKGEAAIELFKEMEKEMLAPDRITFVNL 383

Query: 311 LSACS 315
           LSAC+
Sbjct: 384 LSACA 388



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L +C    ++  GK +H +  KKGI   +  +A  ++ MY +CG+   AL +F  +P
Sbjct: 280 ATMLSACTGLGALEQGKWIHGYIEKKGIEKDS-KLATAIIDMYCKCGSLEKALEVFKGLP 338

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK 101
            +   SWN MI G    G  E +++LF  M ++
Sbjct: 339 HKGISSWNCMIGGLAMHGKGEAAIELFKEMEKE 371


>gi|255542982|ref|XP_002512554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548515|gb|EEF50006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 199/456 (43%), Gaps = 84/456 (18%)

Query: 44  ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND 103
           +N  +  + R G    A  +FDE+P +   SWNA++ G+ +     ++  LFN MP +N 
Sbjct: 20  SNSQISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQPREAHDLFNKMPDRNT 79

Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
            SWN LISG+ K G +  AR +F+ MP RN ++W +M+  Y++ G  ++A  LF E+   
Sbjct: 80  VSWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWEMPEK 139

Query: 164 -----------LVERLQC-------------DAFILATVIGACADLAALEYGKQIHSHI- 198
                      L+E  +              D      +IG       L   ++I   + 
Sbjct: 140 NVVSWTVMLGGLIEDGRVNEAIKLYDLMPLKDVVARTNMIGGLCMEGRLSEAREIFDEMP 199

Query: 199 ---------LVNGL-----------------DFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
                    +++G                  D + V  ++++  Y + G    A ++   
Sbjct: 200 KRNVVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLMGYTRSGRIKEAAELFEA 259

Query: 233 MK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
           M  +P   C + +I G+   G++  A+  FD+  +     W++MI  Y     + EAL L
Sbjct: 260 MPMKPVPAC-NEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLELEALDL 318

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  M+R GV  +  ++ S+LS C SL  L++G+QVH    +     DV V+S L      
Sbjct: 319 FRLMQREGVRPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQFDFDVYVSSVL------ 372

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                    IT+Y  CG +  AK +F     K  + WNS+I G 
Sbjct: 373 -------------------------ITMYIKCGDLVKAKRVFDRFSMKDTVMWNSIITGY 407

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           +Q+G   EAL++F  M    +  D+ +   V++AC+
Sbjct: 408 AQHGLGEEALEVFFEMLSSGISPDEITFIGVLTACS 443



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 191/428 (44%), Gaps = 62/428 (14%)

Query: 67  MPRR------NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
           +PRR      +  S N+ I  F ++G   ++ ++F+ +P K   SWN +++G+ +  + +
Sbjct: 6   VPRRTYCVSLSAISSNSQISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQPR 65

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILATV 178
            A  LFN MP RN ++WN +I  YV+NG   EA  +F ++    V         +I   +
Sbjct: 66  EAHDLFNKMPDRNTVSWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGM 125

Query: 179 IGACADLAALEYGKQIHSH-ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
           I     L      K + S  +++ GL  D              G  N A ++ ++M   D
Sbjct: 126 IKQAESLFWEMPEKNVVSWTVMLGGLIED--------------GRVNEAIKLYDLMPLKD 171

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
               + +I G    G++++AR +FD     + V W +MISGY  NN+   A  LF     
Sbjct: 172 VVARTNMIGGLCMEGRLSEAREIFDEMPKRNVVAWTTMISGYAMNNKVDVARKLFE---- 227

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
             V+ D +                                  +  +A+L  Y++ G   +
Sbjct: 228 --VMPDKNE---------------------------------VTWTAMLMGYTRSGRIKE 252

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
           A +LF  + +      N MI  +   G +  AK  F  M  K   +W++MI    + G  
Sbjct: 253 AAELFEAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLE 312

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
           +EALDLF  M +  +R +  S+ S++S C +++SL+ G QV  ++     D D  +S+ L
Sbjct: 313 LEALDLFRLMQREGVRPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQFDFDVYVSSVL 372

Query: 478 VDFYCKCG 485
           +  Y KCG
Sbjct: 373 ITMYIKCG 380



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 139/295 (47%), Gaps = 65/295 (22%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G  ++A  +FDEMP+RN  +W  MI G+      + + +LF VMP KN+ +W  ++ G+ 
Sbjct: 186 GRLSEAREIFDEMPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLMGYT 245

Query: 115 KAGELKTARTLFNDMPRRNAIA-------------------------------WNSMIHC 143
           ++G +K A  LF  MP +   A                               W++MI  
Sbjct: 246 RSGRIKEAAELFEAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKV 305

Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
           Y R G   EA+ LF+ +  + V R    + I  +++  C  LA+L+YG+Q+H+ ++ +  
Sbjct: 306 YERKGLELEALDLFRLMQREGV-RPNFPSII--SILSVCGSLASLDYGRQVHTQLVRSQF 362

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           DFD  + S L+ +Y K                               CG +  A+RVFDR
Sbjct: 363 DFDVYVSSVLITMYIK-------------------------------CGDLVKAKRVFDR 391

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
            +   +VMWNS+I+GY  +    EAL +F +M  +G+  D  T   VL+ACS  G
Sbjct: 392 FSMKDTVMWNSIITGYAQHGLGEEALEVFFEMLSSGISPDEITFIGVLTACSYSG 446



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C +  S+  G+Q+H   ++    +  + +++ L+ MY++CG+   A  +FD    +
Sbjct: 337 ILSVCGSLASLDYGRQVHTQLVRSQ-FDFDVYVSSVLITMYIKCGDLVKAKRVFDRFSMK 395

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF 95
           +   WN++I G+ + G  E++L++F
Sbjct: 396 DTVMWNSIITGYAQHGLGEEALEVF 420


>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 233/532 (43%), Gaps = 108/532 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+    LQ C        G  +H  FLK G L  +L   N +L  Y++CG  +  L LFD
Sbjct: 216 DFYVSFLQRCVLTSDSRHGSAIHAKFLK-GFLPFSLFFHNHVLNFYVKCGRLSYGLQLFD 274

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-------NVMPQK----------------- 101
           EMP RN  SW+A+I GF++ G   ++L LF        +MP +                 
Sbjct: 275 EMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLI 334

Query: 102 ----------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                           N F  N  ++   +  +L  A  +F     ++ ++WN+M+  Y+
Sbjct: 335 CSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYL 394

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +  +  E  + ++ +N   +E ++ D F  A+++   A L+    G Q+H  ++ +G   
Sbjct: 395 QLAYF-ELPKFWRRMN---LESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGN 450

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  +G+SL ++Y K       NQ                        K+ D  + FD  +
Sbjct: 451 DICVGNSLCDMYVK-------NQ------------------------KLLDGFKAFDEMS 479

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            +    W  M +G +   E  +AL + ++M+  GV  +  TLA+ L++C++L  +E GK+
Sbjct: 480 SSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKK 539

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            HG   K+G   DV V +ALLD Y+K                               CG 
Sbjct: 540 FHGLRIKLGTDVDVCVDNALLDMYAK-------------------------------CGC 568

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +  A  +FR+M  +S++SW +MI+G + NG   EAL +F  M K +   +  +   V++A
Sbjct: 569 MTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNA 628

Query: 446 CANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           C+    ++   + F+ ++   G+   +     +V+   + G IK  E  ++Q
Sbjct: 629 CSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQ 680



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L SC    SI  GK+ H   +K G  +  + + N LL MY +CG  T A ++F  M
Sbjct: 521 LATALNSCANLASIEEGKKFHGLRIKLGT-DVDVCVDNALLDMYAKCGCMTSANVVFRSM 579

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             R+  SW  MI GF   G  +++LQ+F+ M     + N  ++  +++  ++ G +  A 
Sbjct: 580 DERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAW 639

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M   + IA     +  M++   R G  +EA  L  ++        Q  + +  T+
Sbjct: 640 KYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQM------PFQPGSLVWQTL 693

Query: 179 IGACADLAALEYGKQIHSHIL 199
           +GAC     +E GK+   H L
Sbjct: 694 LGACLVHGDIETGKRAAEHAL 714


>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 233/532 (43%), Gaps = 108/532 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
           D+    LQ C        G  +H  FLK G L  +L   N +L  Y++CG  +  L LFD
Sbjct: 216 DFYVSFLQRCVLTSDSRHGSAIHAKFLK-GFLPFSLFFHNHVLNFYVKCGRLSYGLQLFD 274

Query: 66  EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF-------NVMPQK----------------- 101
           EMP RN  SW+A+I GF++ G   ++L LF        +MP +                 
Sbjct: 275 EMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLI 334

Query: 102 ----------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                           N F  N  ++   +  +L  A  +F     ++ ++WN+M+  Y+
Sbjct: 335 CSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYL 394

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +  +  E  + ++ +N   +E ++ D F  A+++   A L+    G Q+H  ++ +G   
Sbjct: 395 QLAYF-ELPKFWRRMN---LESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGN 450

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  +G+SL ++Y K       NQ                        K+ D  + FD  +
Sbjct: 451 DICVGNSLCDMYVK-------NQ------------------------KLLDGFKAFDEMS 479

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
            +    W  M +G +   E  +AL + ++M+  GV  +  TLA+ L++C++L  +E GK+
Sbjct: 480 SSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKK 539

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
            HG   K+G   DV V +ALLD Y+K                               CG 
Sbjct: 540 FHGLRIKLGTDVDVCVDNALLDMYAK-------------------------------CGC 568

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +  A  +FR+M  +S++SW +MI+G + NG   EAL +F  M K +   +  +   V++A
Sbjct: 569 MTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNA 628

Query: 446 CANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           C+    ++   + F+ ++   G+   +     +V+   + G IK  E  ++Q
Sbjct: 629 CSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQ 680



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  L SC    SI  GK+ H   +K G  +  + + N LL MY +CG  T A ++F  M
Sbjct: 521 LATALNSCANLASIEEGKKFHGLRIKLGT-DVDVCVDNALLDMYAKCGCMTSANVVFRSM 579

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
             R+  SW  MI GF   G  +++LQ+F+ M     + N  ++  +++  ++ G +  A 
Sbjct: 580 DERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAW 639

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F+ M   + IA     +  M++   R G  +EA  L  ++        Q  + +  T+
Sbjct: 640 KYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQM------PFQPGSLVWQTL 693

Query: 179 IGACADLAALEYGKQIHSHIL 199
           +GAC     +E GK+   H L
Sbjct: 694 LGACLVHGDIETGKRAAEHAL 714


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 226/517 (43%), Gaps = 104/517 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C++    H GK +H   LK+G  +S     N +L  YM+ G    AL +FD M  R
Sbjct: 56  ILKACSSLPVRH-GKSIHASLLKQG-FDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSR 113

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-------------------------NVMPQKNDFS 105
           +  SWN MI G +  G  +K L  F                           M +     
Sbjct: 114 DSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMH 173

Query: 106 WNMLISGFAKA-------------GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
             ++ SGF                 +++ A  LF++M  R+ I+W+ MI  YV+ G A+ 
Sbjct: 174 GYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKM 233

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A++LF E+ S+    ++ D   + +V+ ACA+   +  G+ +H  ++  GLD+D  +G+S
Sbjct: 234 ALQLFLEMTSN--ASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNS 291

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           ++++Y KC D  SA +  N M      C                           ++V W
Sbjct: 292 IIDMYSKCDDHESAFKAFNEMP-----C--------------------------RNTVSW 320

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           NS+ISG +   + +EAL LF+ M + G   D  TL ++L +C         K +H    +
Sbjct: 321 NSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIR 380

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
            G   +  V ++L+D YSK  +   A KLF  LK  DT+  + MI  ++ CG+       
Sbjct: 381 WGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGK------- 433

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
                                   P EA+ LF  MN+   + +  ++ S++ A +  + L
Sbjct: 434 ------------------------PDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADL 469

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           +  +         GL ++  + T+++D Y KCG I +
Sbjct: 470 KRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGL 506



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/499 (24%), Positives = 206/499 (41%), Gaps = 109/499 (21%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDA 60
           +  +  L   + +C +  ++  G ++H + ++ G L+  +P + N LL MY    +   A
Sbjct: 147 EPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLD--IPSVQNSLLSMYAD-NDMERA 203

Query: 61  LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----------------- 103
             LFDEM  R+  SW+ MI G+++ G  + +LQLF  M                      
Sbjct: 204 EELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACAN 263

Query: 104 -----------------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                                  F  N +I  ++K  + ++A   FN+MP RN ++WNS+
Sbjct: 264 TGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSI 323

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I   VR     EA+ LF  +        + D   L  ++ +C         K IHS ++ 
Sbjct: 324 ISGLVRTEKHSEALSLFYSMGK---AGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIR 380

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
            G + +                               +F +++LI  Y+ C  +  A ++
Sbjct: 381 WGYELN-------------------------------EFVINSLIDAYSKCDLIELAWKL 409

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FDR     +V W++MI+G+    +  EA+ LF +M +     +  T+ S+L A S    L
Sbjct: 410 FDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADL 469

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           +  K  HG A + G+  +V V +A+LD Y+K                             
Sbjct: 470 KRSKWAHGIAIRRGLAAEVAVGTAILDMYAK----------------------------- 500

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG I  ++  F  +P K+++SW +MI     NG   +AL L   M    L+ +  +  
Sbjct: 501 --CGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTL 558

Query: 441 SVISACANISSLELGEQVF 459
           SV+SAC++   +E G   F
Sbjct: 559 SVLSACSHGGLVEEGLSFF 577



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D  ++ +++ AC+ L  + +GK IH+ +L  G D  +  G+S+++ Y K G  +SA    
Sbjct: 49  DPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSA---- 103

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                                        VFD      SV WN MI G++S     + L 
Sbjct: 104 ---------------------------LFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLW 136

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
            F + R      + STL   + AC SLG +E G ++HG+  + G +D   V ++LL  Y+
Sbjct: 137 WFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYA 196

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
              M                                E A+ +F  M  + +ISW+ MI G
Sbjct: 197 DNDM--------------------------------ERAEELFDEMCERDVISWSVMIGG 224

Query: 411 LSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
             Q G    AL LF  M +   + +D  ++ SV+ ACAN   + +G  V   V   GLD 
Sbjct: 225 YVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDY 284

Query: 470 DQIISTSLVDFYCKC 484
           D  +  S++D Y KC
Sbjct: 285 DLFVGNSIIDMYSKC 299



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 113/272 (41%), Gaps = 52/272 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  LLQSC         K +H   ++ G   +   I N L+  Y +C     A  LFD +
Sbjct: 355 LVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVI-NSLIDAYSKCDLIELAWKLFDRL 413

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-------------FS--------- 105
             ++  SW+AMI GF   G  ++++ LF  M Q  +             FS         
Sbjct: 414 KTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSK 473

Query: 106 W-----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           W                   ++  +AK GE+  +R  F+ +P +N ++W +MI     NG
Sbjct: 474 WAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNG 533

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-----KQIHSHILVNGL 203
            AR+A+ L  E+    +  L+ +     +V+ AC+    +E G       +  H +  GL
Sbjct: 534 LARDALALLSEMK---LHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGL 590

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +  S     +V++  + G  NSA  ++  M E
Sbjct: 591 EHYSC----MVDMLSRAGKLNSAMNLIEKMPE 618


>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
           [Vitis vinifera]
 gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
          Length = 617

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 236/490 (48%), Gaps = 73/490 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++    +S   G+ LH   +K G  +  +  A  L  MYM+    + AL +F+EMP R
Sbjct: 39  LLKASAKLNSPLQGQILHTQLIKTG-FHLDIYAATALADMYMKLHLLSYALKVFEEMPHR 97

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP--------------- 99
           N  S N  I GF + G+  ++L  F                +V+P               
Sbjct: 98  NLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLA 157

Query: 100 -----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                + + +    +++ ++  GEL  A+ +F+ +  +N +++N+ I   ++NG      
Sbjct: 158 IKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVF 217

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            +FK+L     E    ++  L +++ AC+ L  + +G+QIH  ++   ++FD+++G++LV
Sbjct: 218 DVFKDLLESSGEV--PNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALV 275

Query: 215 NLYGKCGDFNSANQV-LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSS 269
           ++Y KCG ++ A  + + +    +    +++I+G    G+ + A  +F++      +  S
Sbjct: 276 DMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDS 335

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN+MISG+    +  EA   FHKM+  GV+    ++ S+L ACS+L  L+ GK++HGH
Sbjct: 336 ATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGH 395

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             +  +  D  +++AL+D Y K G    A ++F +                         
Sbjct: 396 TIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQ------------------------- 430

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
              F+  P+     WN+MI G  +NG    A ++F  M +  ++ +  +L S++S C++ 
Sbjct: 431 ---FQIKPDDPAF-WNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHT 486

Query: 450 SSLELGEQVF 459
             ++ G Q+F
Sbjct: 487 GEIDRGWQLF 496



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 189/373 (50%), Gaps = 43/373 (11%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A  +F +MP RN  + N  I  + RNG+ REA+  FK++    +   + ++  +A+V
Sbjct: 84  LSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVG---LGNFRPNSVTIASV 140

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + ACA   ++E   Q+H   +  G+                               E D 
Sbjct: 141 LPACA---SVELDGQVHCLAIKLGV-------------------------------ESDI 166

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RR 297
           +  +A+++ Y+NCG++  A++VFD+  D + V +N+ ISG + N        +F  +   
Sbjct: 167 YVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLES 226

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           +G + ++ TL S+LSACS L ++  G+Q+HG   K+ +  D +V +AL+D YSK G    
Sbjct: 227 SGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHW 286

Query: 358 ACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLS 412
           A  +F EL    + +  N+MI      G+ + A  +F  +  + L     +WN+MI G S
Sbjct: 287 AYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFS 346

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q G  +EA   F  M    +     S+ S++ AC+ +S+L+ G+++        +D+D+ 
Sbjct: 347 QQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEF 406

Query: 473 ISTSLVDFYCKCG 485
           IST+L+D Y KCG
Sbjct: 407 ISTALIDMYMKCG 419



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 69/342 (20%)

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V NGF REA+ L+ +L+S  V       F    ++ A A L +   G+ +H+ ++  G  
Sbjct: 9   VSNGFYREALSLYSKLHSSSVLE---HKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFH 65

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D    ++L ++Y K    + A +V   M   +   L+  ISG++  G   +A   F + 
Sbjct: 66  LDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQV 125

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                          R N V     T+ASVL AC+S   +E   
Sbjct: 126 G--------------------------LGNFRPNSV-----TIASVLPACAS---VELDG 151

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           QVH  A K+GV  D+ VA+A+                               +T+YS+CG
Sbjct: 152 QVHCLAIKLGVESDIYVATAV-------------------------------VTMYSNCG 180

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVI 443
            +  AK +F  + +K+++S+N+ I GL QNG+P    D+F ++ +    + +  +L S++
Sbjct: 181 ELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSIL 240

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SAC+ +  +  G Q+   V  I ++ D ++ T+LVD Y KCG
Sbjct: 241 SACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCG 282



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 174/436 (39%), Gaps = 108/436 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    I  G+Q+H   +K  I   T+ +   L+ MY +CG            
Sbjct: 236 LVSILSACSKLLYIRFGRQIHGLVVKIEINFDTM-VGTALVDMYSKCG------------ 282

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
               C+ W   I  F++L               +N  +WN +I+G    G+   A  LF 
Sbjct: 283 ----CWHWAYGI--FIELSGS------------RNLVTWNSMIAGMMLNGQSDIAVELFE 324

Query: 128 DMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLVERLQCDAFILATVIGAC 182
            +       ++  WN+MI  + + G   EA + F ++ S  ++  L+     + +++ AC
Sbjct: 325 QLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKS----ITSLLRAC 380

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           + L+AL+ GK+IH H +   +D                                D+F  +
Sbjct: 381 SALSALQSGKEIHGHTIRTNID-------------------------------TDEFIST 409

Query: 243 ALISGYANCGKMNDARRVF--DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           ALI  Y  CG    ARRVF   +        WN+MISGY  N +   A  +F++M+   V
Sbjct: 410 ALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKV 469

Query: 301 LEDASTLASVLSACSSLGFLEHGKQV--------------HGHACKVGVID--------- 337
             +++TL S+LS CS  G ++ G Q+                  C V ++          
Sbjct: 470 QPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQ 529

Query: 338 ---------DVIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
                     V V ++LL     +S   +  +  K  SEL+  D      +  +Y+  GR
Sbjct: 530 ELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGR 589

Query: 386 IEDAKHIFRTMPNKSL 401
             D + +   M ++ L
Sbjct: 590 WGDVERVREMMNDRGL 605



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 161/394 (40%), Gaps = 110/394 (27%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S+ +  Q+H   +K G+  S + +A  ++ MY  CG    A  +FD++
Sbjct: 137 IASVLPACA---SVELDGQVHCLAIKLGV-ESDIYVATAVVTMYSNCGELVLAKKVFDQI 192

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-------------------- 107
             +N  S+NA I G ++ G       +F  + + +    N                    
Sbjct: 193 LDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFG 252

Query: 108 --------------------MLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVR 146
                                L+  ++K G    A  +F ++   RN + WNSMI   + 
Sbjct: 253 RQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMML 312

Query: 147 NGFAREAVRLFKELNSDLVE---------------------------RLQCDAFI----- 174
           NG +  AV LF++L  + +E                           ++Q    I     
Sbjct: 313 NGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKS 372

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           + +++ AC+ L+AL+ GK+IH H +   +D D  + ++L+++Y KCG    A +V    +
Sbjct: 373 ITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQ 432

Query: 235 -EPDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
            +PDD    +A+ISGY   GK   A  +F+                              
Sbjct: 433 IKPDDPAFWNAMISGYGRNGKYQSAFEIFN------------------------------ 462

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            +M+   V  +++TL S+LS CS  G ++ G Q+
Sbjct: 463 -QMQEEKVQPNSATLVSILSVCSHTGEIDRGWQL 495



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 34/210 (16%)

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I+  +SN    EAL L+ K+  + VLE   T   +L A + L     G+ +H    K G 
Sbjct: 5   IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 64

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             D+  A+AL D Y K  + S A K+F E                               
Sbjct: 65  HLDIYAATALADMYMKLHLLSYALKVFEE------------------------------- 93

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MP+++L S N  I G S+NG   EAL  F  +   + R +  ++ASV+ ACA   S+EL 
Sbjct: 94  MPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACA---SVELD 150

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            QV      +G++SD  ++T++V  Y  CG
Sbjct: 151 GQVHCLAIKLGVESDIYVATAVVTMYSNCG 180


>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
          Length = 677

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 236/490 (48%), Gaps = 73/490 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++    +S   G+ LH   +K G  +  +  A  L  MYM+    + AL +F+EMP R
Sbjct: 99  LLKASAKLNSPLQGQILHTQLIKTG-FHLDIYAATALADMYMKLHLLSYALKVFEEMPHR 157

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP--------------- 99
           N  S N  I GF + G+  ++L  F                +V+P               
Sbjct: 158 NLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLA 217

Query: 100 -----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
                + + +    +++ ++  GEL  A+ +F+ +  +N +++N+ I   ++NG      
Sbjct: 218 IKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVF 277

Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
            +FK+L     E    ++  L +++ AC+ L  + +G+QIH  ++   ++FD+++G++LV
Sbjct: 278 DVFKDLLESSGE--VPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALV 335

Query: 215 NLYGKCGDFNSANQV-LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSS 269
           ++Y KCG ++ A  + + +    +    +++I+G    G+ + A  +F++      +  S
Sbjct: 336 DMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDS 395

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
             WN+MISG+    +  EA   FHKM+  GV+    ++ S+L ACS+L  L+ GK++HGH
Sbjct: 396 ATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGH 455

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             +  +  D  +++AL+D Y K G    A ++F +                         
Sbjct: 456 TIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQ------------------------- 490

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
              F+  P+     WN+MI G  +NG    A ++F  M +  ++ +  +L S++S C++ 
Sbjct: 491 ---FQIKPDDPAF-WNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHT 546

Query: 450 SSLELGEQVF 459
             ++ G Q+F
Sbjct: 547 GEIDRGWQLF 556



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 189/373 (50%), Gaps = 43/373 (11%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A  +F +MP RN  + N  I  + RNG+ REA+  FK++    +   + ++  +A+V
Sbjct: 144 LSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVG---LGNFRPNSVTIASV 200

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + ACA   ++E   Q+H   +  G+                               E D 
Sbjct: 201 LPACA---SVELDGQVHCLAIKLGV-------------------------------ESDI 226

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RR 297
           +  +A+++ Y+NCG++  A++VFD+  D + V +N+ ISG + N        +F  +   
Sbjct: 227 YVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLES 286

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           +G + ++ TL S+LSACS L ++  G+Q+HG   K+ +  D +V +AL+D YSK G    
Sbjct: 287 SGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHW 346

Query: 358 ACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLS 412
           A  +F EL    + +  N+MI      G+ + A  +F  +  + L     +WN+MI G S
Sbjct: 347 AYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFS 406

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q G  +EA   F  M    +     S+ S++ AC+ +S+L+ G+++        +D+D+ 
Sbjct: 407 QQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEF 466

Query: 473 ISTSLVDFYCKCG 485
           IST+L+D Y KCG
Sbjct: 467 ISTALIDMYMKCG 479



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 69/342 (20%)

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V NGF REA+ L+ +L+S  V       F    ++ A A L +   G+ +H+ ++  G  
Sbjct: 69  VSNGFYREALSLYSKLHSSSVLE---HKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFH 125

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D    ++L ++Y K    + A +V   M   +   L+  ISG++  G   +A   F + 
Sbjct: 126 LDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQV 185

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                          R N V     T+ASVL AC+S   +E   
Sbjct: 186 G--------------------------LGNFRPNSV-----TIASVLPACAS---VELDG 211

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           QVH  A K+GV  D+ VA+A+                               +T+YS+CG
Sbjct: 212 QVHCLAIKLGVESDIYVATAV-------------------------------VTMYSNCG 240

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVI 443
            +  AK +F  + +K+++S+N+ I GL QNG+P    D+F ++ +    + +  +L S++
Sbjct: 241 ELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSIL 300

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SAC+ +  +  G Q+   V  I ++ D ++ T+LVD Y KCG
Sbjct: 301 SACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCG 342



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 174/436 (39%), Gaps = 108/436 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    I  G+Q+H   +K  I   T+ +   L+ MY +CG            
Sbjct: 296 LVSILSACSKLLYIRFGRQIHGLVVKIEINFDTM-VGTALVDMYSKCG------------ 342

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
               C+ W   I  F++L               +N  +WN +I+G    G+   A  LF 
Sbjct: 343 ----CWHWAYGI--FIELSGS------------RNLVTWNSMIAGMMLNGQSDIAVELFE 384

Query: 128 DMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNS-DLVERLQCDAFILATVIGAC 182
            +       ++  WN+MI  + + G   EA + F ++ S  ++  L+     + +++ AC
Sbjct: 385 QLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKS----ITSLLRAC 440

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
           + L+AL+ GK+IH H +   +D                                D+F  +
Sbjct: 441 SALSALQSGKEIHGHTIRTNID-------------------------------TDEFIST 469

Query: 243 ALISGYANCGKMNDARRVF--DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
           ALI  Y  CG    ARRVF   +        WN+MISGY  N +   A  +F++M+   V
Sbjct: 470 ALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKV 529

Query: 301 LEDASTLASVLSACSSLGFLEHGKQV--------------HGHACKVGVID--------- 337
             +++TL S+LS CS  G ++ G Q+                  C V ++          
Sbjct: 530 QPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQ 589

Query: 338 ---------DVIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
                     V V ++LL     +S   +  +  K  SEL+  D      +  +Y+  GR
Sbjct: 590 ELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGR 649

Query: 386 IEDAKHIFRTMPNKSL 401
             D + +   M ++ L
Sbjct: 650 WGDVERVREMMNDRGL 665



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 161/394 (40%), Gaps = 110/394 (27%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +A +L +C    S+ +  Q+H   +K G+  S + +A  ++ MY  CG    A  +FD++
Sbjct: 197 IASVLPACA---SVELDGQVHCLAIKLGV-ESDIYVATAVVTMYSNCGELVLAKKVFDQI 252

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-------------------- 107
             +N  S+NA I G ++ G       +F  + + +    N                    
Sbjct: 253 LDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFG 312

Query: 108 --------------------MLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVR 146
                                L+  ++K G    A  +F ++   RN + WNSMI   + 
Sbjct: 313 RQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMML 372

Query: 147 NGFAREAVRLFKELNSDLVE---------------------------RLQCDAFI----- 174
           NG +  AV LF++L  + +E                           ++Q    I     
Sbjct: 373 NGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKS 432

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           + +++ AC+ L+AL+ GK+IH H +   +D D  + ++L+++Y KCG    A +V    +
Sbjct: 433 ITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQ 492

Query: 235 -EPDDFCL-SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
            +PDD    +A+ISGY   GK   A  +F+                              
Sbjct: 493 IKPDDPAFWNAMISGYGRNGKYQSAFEIFN------------------------------ 522

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
            +M+   V  +++TL S+LS CS  G ++ G Q+
Sbjct: 523 -QMQEEKVQPNSATLVSILSVCSHTGEIDRGWQL 555



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 34/210 (16%)

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I+  +SN    EAL L+ K+  + VLE   T   +L A + L     G+ +H    K G 
Sbjct: 65  IAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGF 124

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
             D+  A+AL D Y K  + S A K+F E                               
Sbjct: 125 HLDIYAATALADMYMKLHLLSYALKVFEE------------------------------- 153

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
           MP+++L S N  I G S+NG   EAL  F  +   + R +  ++ASV+ ACA   S+EL 
Sbjct: 154 MPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACA---SVELD 210

Query: 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            QV      +G++SD  ++T++V  Y  CG
Sbjct: 211 GQVHCLAIKLGVESDIYVATAVVTMYSNCG 240


>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
          Length = 628

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 175/361 (48%), Gaps = 38/361 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ N ++  +  LG    + +LF  +P++N  SWN+L  G+ K G+L  AR LF++MP R
Sbjct: 77  FTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPER 136

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N   WN+M+      GF  E++ LF ++     E +  D F L +V   CA L  +  G+
Sbjct: 137 NVATWNAMVAGLTNLGFDEESLGLFLDMRR---EGMHPDEFGLGSVSRCCAGLRDVVTGR 193

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H++++ +GLD D  +GSSL ++Y +CG       VL M+                   
Sbjct: 194 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS----------------- 236

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                          S V  N++I+G   N +   AL  F  MR  GV  D  T  S +S
Sbjct: 237 --------------LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAIS 282

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +CS L  L  G+Q+HG   K GV   V V + L+  YS+ G   D+ ++F      DT L
Sbjct: 283 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 342

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           L+ MI+ Y   G  + A  +F+ M N     S +++ +++   S +G   E +D F  M 
Sbjct: 343 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 402

Query: 429 K 429
           K
Sbjct: 403 K 403



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 148/314 (47%), Gaps = 34/314 (10%)

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           A + + +  AC  L  L   +Q+H+    +G   D    + L+  Y   GD  +A ++  
Sbjct: 44  ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 100

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            +   +    + L  GY   G +  AR++FD   + +   WN+M++G  +   D E+L L
Sbjct: 101 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGL 160

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  MRR G+  D   L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +
Sbjct: 161 FLDMRREGMHPDEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR 220

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +++ + + R +P+ S++S N++I G 
Sbjct: 221 -------------------------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGR 249

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +QNG    AL+ FC M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D   
Sbjct: 250 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVV 309

Query: 472 IISTSLVDFYCKCG 485
            + T LV  Y +CG
Sbjct: 310 PVMTCLVHMYSRCG 323



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 295 MRR--NGVL-EDASTLAS-VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +RR   GVL  DA+ L S +  AC +L  L   +Q+H  A   G   D   A+ L+  Y+
Sbjct: 31  LRRPFRGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYA 87

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
             G  + A +LF  +   + +  N +   Y   G +  A+ +F  MP +++ +WN+M+ G
Sbjct: 88  DLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAG 147

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           L+  G   E+L LF +M +  +  D+F L SV   CA +  +  G QV A V   GLD D
Sbjct: 148 LTNLGFDEESLGLFLDMRREGMHPDEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGLDRD 207

Query: 471 QIISTSLVDFYCKCGFIKMDEYYL 494
             + +SL   Y +CG ++  E  L
Sbjct: 208 MCVGSSLAHMYMRCGCLQEGEAVL 231



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 281 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 339

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFN 127
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+   + +G  +     F 
Sbjct: 340 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   I      +  ++    R+G   EA  L       L   L  D  I  T++ AC
Sbjct: 400 LMTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALI------LSMPLTPDGVIWKTLLSAC 453

Query: 183 ADLAALEYGKQIHSHIL-VNGLDFDS-VLGSSLVNLYGKCGDFNSANQVL---NMMKEP 236
                 +  ++I   ++ ++  D  S VL S++     + GD +   + +   N+ KEP
Sbjct: 454 KTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEP 512



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 127/324 (39%), Gaps = 59/324 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + + C     +  G+Q+H + ++ G L+  + + + L  MYMRCG   +   +   +
Sbjct: 176 LGSVSRCCAGLRDVVTGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGCLQEGEAVLRML 234

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P  +  S N +I G  + G  E +L+ F +M       +  ++   IS  +    L   +
Sbjct: 235 PSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQ 294

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +   + +    +       ++H Y R G   ++ R+F             D F+L+ +I
Sbjct: 295 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-------FGYCGSDTFLLSAMI 347

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            A        YG   H H            G   + L+          Q++N   EP D 
Sbjct: 348 SA--------YG--FHGH------------GQKAIELF---------KQMMNGGAEPSDV 376

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNN---EDTEALLLF 292
              AL+   ++ G   +    F+  T T     SV   + +   +  +   ++ EAL+L 
Sbjct: 377 TFLALLYACSHSGLKEEGMDCFELMTKTYGIQPSVKHYTCVVDLLGRSGCLDEAEALILS 436

Query: 293 HKMRRNGVLEDASTLASVLSACSS 316
             +  +GV+       ++LSAC +
Sbjct: 437 MPLTPDGVI-----WKTLLSACKT 455


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 179/381 (46%), Gaps = 73/381 (19%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           + K  EL  AR LF+ MP RN I++NS+I  Y + GF  +A+ LF E   D    L+ D 
Sbjct: 93  YCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDD---NLKLDK 149

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           F  A  +G C +   L++GK +H  ++VNGL                      + QV   
Sbjct: 150 FTYAGALGFCGERCDLDFGKLLHGLVVVNGL----------------------SQQV--- 184

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                 F ++ LI  Y+ CGK++ A  +FDR  +   V WNS+ISGY+      E L L 
Sbjct: 185 ------FLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLL 238

Query: 293 HKMRRNGVLEDASTLASVLSACS---SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            KM R G+      L SVL AC    + G +E G  +H +A K+G+  D++V +ALLD Y
Sbjct: 239 AKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTALLDMY 298

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
           +K                                G +++A  +F  MP K+++++N+MI 
Sbjct: 299 AKN-------------------------------GSLKEAIKLFSLMPAKNVVTYNAMIS 327

Query: 410 GLSQ-----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           G  Q     + +  EA  LF  M +  L     + + V+ AC+   +LE G Q+ A +  
Sbjct: 328 GFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICK 387

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
               SD+ I ++L++ Y   G
Sbjct: 388 NNFQSDEFIGSALIELYALMG 408



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 137/524 (26%), Positives = 230/524 (43%), Gaps = 115/524 (21%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L Q+     S+ +GK  H H +K  +      + N LL MY +C     A  LFD MP 
Sbjct: 53  KLFQTAAKSGSLVLGKLAHGHMVKSSLNPCLY-LLNNLLNMYCKCRELGFARQLFDRMPE 111

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLF---------------------------------- 95
           RN  S+N++I G+ ++G  E++++LF                                  
Sbjct: 112 RNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLL 171

Query: 96  ------NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                 N + Q+  F  N+LI  ++K G+L  A +LF+    R+ ++WNS+I  YVR G 
Sbjct: 172 HGLVVVNGLSQQV-FLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGA 230

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACA---DLAALEYGKQIHSHILVNGLDFD 206
           A E + L  +++      L+   + L +V+ AC    +   +E G  IH +    G++FD
Sbjct: 231 AEEPLNLLAKMHR---AGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFD 287

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            V+ ++L+++Y K G                                + +A ++F     
Sbjct: 288 IVVRTALLDMYAKNGS-------------------------------LKEAIKLFSLMPA 316

Query: 267 TSSVMWNSMISGY-----ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
            + V +N+MISG+     I++   +EA  LF +M+R G+    ST + VL ACS+   LE
Sbjct: 317 KNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLE 376

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
           +G+Q+H   CK     D  + SAL                               I +Y+
Sbjct: 377 YGRQIHALICKNNFQSDEFIGSAL-------------------------------IELYA 405

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             G  ED    F +   + + SW S+I    QN     A DLF  +    +R ++++++ 
Sbjct: 406 LMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSL 465

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++SACA+ ++L  GEQ+       G+D+   + TS +  Y K G
Sbjct: 466 MMSACADFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSG 509



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 121/519 (23%), Positives = 214/519 (41%), Gaps = 114/519 (21%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C     +  GK LH   +  G L+  + + N L+ MY +CG    A+ LFD    R+  S
Sbjct: 159 CGERCDLDFGKLLHGLVVVNG-LSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVS 217

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------------------- 102
           WN++I G++++G  E+ L L   M +                                  
Sbjct: 218 WNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHC 277

Query: 103 -------DFSW---NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR-----N 147
                  +F       L+  +AK G LK A  LF+ MP +N + +N+MI  +++     +
Sbjct: 278 YAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITD 337

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
             + EA +LF E+       L+      + V+ AC+    LEYG+QIH+ I  N      
Sbjct: 338 EASSEAFKLFMEMQR---RGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNF---- 390

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                      + D+F  SALI  YA  G   D  + F  T+  
Sbjct: 391 ---------------------------QSDEFIGSALIELYALMGSTEDGMQCFASTSKQ 423

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
               W S+I  ++ N +   A  LF ++  + +  +  T++ ++SAC+    L  G+Q+ 
Sbjct: 424 DIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSACADFAALSSGEQIQ 483

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G+A K G+           D Y                    T +  + I++Y+  G + 
Sbjct: 484 GYAIKSGI-----------DAY--------------------TSVKTSSISMYAKSGNMP 512

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            A  +F  + N  + ++++MI  L+Q+GS  +AL++F +M    ++ ++ +   V+ AC 
Sbjct: 513 LANKVFIEVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACC 572

Query: 448 NISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
           +   +  G   F  +    G++ ++   T L D   + G
Sbjct: 573 HGGLVTHGVNYFQTMKNSYGINPNEKHFTCLADLLGRTG 611



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 34/244 (13%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y  C ++  AR++FDR  + + + +NS+ISGY       +A+ LF + R + +  D  T 
Sbjct: 93  YCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTY 152

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A  L  C     L+ GK +HG     G+   V                            
Sbjct: 153 AGALGFCGERCDLDFGKLLHGLVVVNGLSQQVF--------------------------- 185

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
               L+N +I +YS CG+++ A  +F     +  +SWNS+I G  + G+  E L+L   M
Sbjct: 186 ----LINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLLAKM 241

Query: 428 NKLDLRMDKFSLASVISACA---NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ++  L++  ++L SV+ AC    N   +E G  +      +G++ D ++ T+L+D Y K 
Sbjct: 242 HRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTALLDMYAKN 301

Query: 485 GFIK 488
           G +K
Sbjct: 302 GSLK 305



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y  C  +  A+ +F  MP +++IS+NS+I G +Q G   +A++LF      +L++DKF+
Sbjct: 92  MYCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFT 151

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            A  +  C     L+ G+ +   V + GL     +   L+D Y KCG  K+D+
Sbjct: 152 YAGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCG--KLDQ 202


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 195/415 (46%), Gaps = 50/415 (12%)

Query: 51  YMRCGNPTDALLLFDEM-PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           Y++CG   +A  LFD +  ++N  +W AM+ G+++      + +LFN MP KN  SWN +
Sbjct: 93  YIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTM 152

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I G+A+ G + +A  LF  MP RN ++WN+++    + G   EA RLF  +     ER  
Sbjct: 153 IDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMP----ER-- 206

Query: 170 CDAFILATVIGACADLAALEYGKQI-HSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSAN 227
                   VI   A +A L    +I  + +L + +   +V+  ++++  Y +    + A 
Sbjct: 207 -------DVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEAL 259

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
            +   M E D    + +I+G    G +  AR++F+     + + W +MI+G +   E  E
Sbjct: 260 DLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEE 319

Query: 288 ALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           AL +F +M   NG   +  T  SVL ACS+L  L  G+QVH    K    D   V SAL+
Sbjct: 320 ALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALI 379

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR--TMPNKSLISW 404
           + YSK                               CG +  A+ +F       + L+SW
Sbjct: 380 NMYSK-------------------------------CGELGTARKMFDDGMTSQRDLVSW 408

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           N +I   + +G   EA++ F  M K   + D  +   ++SAC++   +E G + F
Sbjct: 409 NGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYF 463



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 173/381 (45%), Gaps = 52/381 (13%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +I+  +K G +  AR LF++M   + I W ++I  Y++ G   EA RLF  +++    
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDA---- 111

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNS 225
             + +      ++G       +   K   +  L N +   +V+  +++++ Y + G  +S
Sbjct: 112 --KKNVVTWTAMVGGY-----IRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDS 164

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           A  +   M E +    + ++S  A CG++ +ARR+FDR  +   + W +MI+G   N   
Sbjct: 165 AMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRI 224

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA LLF +M                                          +V+  +A+
Sbjct: 225 DEARLLFDRMPER---------------------------------------NVVSWNAM 245

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y++     +A  LF  +   D    NTMIT     G +  A+ +F  MP K++ISW 
Sbjct: 246 ITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWT 305

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTI 464
           +MI G  Q G   EAL +F  M   +  + ++ +  SV+ AC+N++ L  G+QV   ++ 
Sbjct: 306 TMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISK 365

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
                   + ++L++ Y KCG
Sbjct: 366 TVYQDSTFVVSALINMYSKCG 386



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 144/338 (42%), Gaps = 69/338 (20%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-- 98
           LP  N ++   ++ G+   A  LF+EMP++N  SW  MI G ++ G  E++L++F+ M  
Sbjct: 270 LPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLS 329

Query: 99  -----P---------------------------------QKNDFSWNMLISGFAKAGELK 120
                P                                 Q + F  + LI+ ++K GEL 
Sbjct: 330 TNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELG 389

Query: 121 TARTLFND--MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           TAR +F+D    +R+ ++WN +I  Y  +G+ +EA+  FKE+        + D      +
Sbjct: 390 TARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKS---GFKPDDVTYVGL 446

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS-----LVNLYGKCGDFNSANQVLNMM 233
           + AC+    +E G +    ++ +     S+L        LV+L G+ G    A   +  +
Sbjct: 447 LSACSHAGLVEEGLKYFDELVKD----RSILVREDHYACLVDLCGRAGRLKEAFGFIERL 502

Query: 234 K-EPDDFCLSALISG---YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
           + +P      AL++G   +AN      A +        ++  +  + + Y S  +  EA 
Sbjct: 503 ETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAA 562

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
            +  KM+  G+ +           CS   ++E G +VH
Sbjct: 563 RVRLKMKDKGLKKQP--------GCS---WIEVGNRVH 589


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 228/503 (45%), Gaps = 81/503 (16%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K +H    K   L   + +AN L+  Y++ G   +A  +F  +   N  S+ AMI GF K
Sbjct: 92  KAVHASIFK---LAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAK 148

Query: 85  LGHKEKSLQLFNVMP----QKNDFSW---------------------------------- 106
              + +++++F  M     + N+FS+                                  
Sbjct: 149 SNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFV 208

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N L+  + K G L +   LF++MP R+  +WN++I   V+      A  LF+++    +
Sbjct: 209 SNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRR--I 266

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           +  + D F L+T++ A   LA++  G++IH+H++  G + +  + ++L+  Y KCG    
Sbjct: 267 DGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKH 325

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
              +   M+  D    + +I+ Y   G  + A  VFD+    +S+ +N+++SG+  N E 
Sbjct: 326 VVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEG 385

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           ++AL  F +M   GV     TL  VL+AC  L   +  KQ+HG   K G   +  + +AL
Sbjct: 386 SKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAAL 445

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI--FRTMPNKSLIS 403
           LD  ++                               CGR+ DA+ +    +      I 
Sbjct: 446 LDMCTR-------------------------------CGRMADAQKMFSQGSFSQSGSII 474

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFAR 461
           W SMI G ++N  P EA+ LFC  ++L+  + +DK +  +V+  C  ++  E+G+Q+   
Sbjct: 475 WTSMICGYARNAQPEEAISLFCQ-SQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCH 533

Query: 462 VTIIGLDSDQIISTSLVDFYCKC 484
               G  SD  +  S++  Y KC
Sbjct: 534 ALKSGFLSDLGVGNSIITMYSKC 556



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 177/380 (46%), Gaps = 36/380 (9%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N LI  + K G +  A  +F  +   N +++ +MI  + ++   R+A+ +F  + S  +E
Sbjct: 109 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIE 168

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               + F    ++  C  L  LE G Q+H+ ++  G    + + ++L+ LYGK       
Sbjct: 169 ---LNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGK------- 218

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                   CG ++   ++FD         WN++IS  +      
Sbjct: 219 ------------------------CGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYE 254

Query: 287 EALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            A  LF  MRR +G   D  TL+++L A   L  +  G+++H H  K+G   ++ V +AL
Sbjct: 255 RAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVINAL 313

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y+K G       LF +++V D I    MIT Y   G  + A  +F  MP ++ IS+N
Sbjct: 314 IRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYN 373

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +++ G  QNG   +AL  FC M +  + +  F+L  V++AC  +   ++ +Q+   +   
Sbjct: 374 AILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKF 433

Query: 466 GLDSDQIISTSLVDFYCKCG 485
           G  S+  I  +L+D   +CG
Sbjct: 434 GFGSNACIEAALLDMCTRCG 453



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 134/260 (51%), Gaps = 34/260 (13%)

Query: 231 NMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
           ++ K  +D  L+ ALI  Y   G + +A +VF   +  + V + +MISG+  +N + +A+
Sbjct: 97  SIFKLAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAM 156

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            +F +MR +G+  +  +  ++L+ C  L  LE G Q+H    K+G ++   V++AL+  Y
Sbjct: 157 EIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLY 216

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K                               CG ++    +F  MP++ + SWN++I 
Sbjct: 217 GK-------------------------------CGYLDSVLQLFDEMPHRDIASWNTVIS 245

Query: 410 GLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            + +      A +LF +M ++D  R+D F+L++++ A   ++S+ +G ++ A V  IG +
Sbjct: 246 SVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFE 304

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           S+  +  +L+ FY KCG IK
Sbjct: 305 SNISVINALIRFYTKCGSIK 324



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 147/363 (40%), Gaps = 106/363 (29%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP------------------------- 57
           VG+++H H +K G   S + + N L++ Y +CG+                          
Sbjct: 290 VGREIHAHVIKIG-FESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAY 348

Query: 58  -----TD-ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWN 107
                TD AL +FD+MP RN  S+NA++ GF + G   K+L  F  M ++     DF+  
Sbjct: 349 MEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLT 408

Query: 108 MLISGFAKAGELKTARTLFN------------------DMPRR----------------- 132
            +++      E K ++ +                    DM  R                 
Sbjct: 409 GVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFS 468

Query: 133 --NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
              +I W SMI  Y RN    EA+ LF +  S L   +  D      V+G C  LA  E 
Sbjct: 469 QSGSIIWTSMICGYARNAQPEEAISLFCQ--SQLEGAMVVDKVASTAVLGVCGTLAFHEM 526

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQIH H L +G   D  +G+S++ +Y KC + + A +V N+M   D             
Sbjct: 527 GKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHD------------- 573

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                              V WN +I+G++ + +  EAL ++ KM + G+  D  T   +
Sbjct: 574 ------------------IVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLI 615

Query: 311 LSA 313
           +SA
Sbjct: 616 ISA 618



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 22/227 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C T     +GKQ+H H LK G L S L + N ++ MY +C N  DA+ +F+ MP  
Sbjct: 514 VLGVCGTLAFHEMGKQIHCHALKSGFL-SDLGVGNSIITMYSKCSNMDDAIKVFNVMPAH 572

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGE--LKTART 124
           +  SWN +I G +     +++L +++ M     + +  ++ ++IS +       +   R 
Sbjct: 573 DIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRR 632

Query: 125 LFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           LF  M     I      + S++      G   EA  +  ++       ++ +A +   ++
Sbjct: 633 LFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMP------IEPEASVWRALL 686

Query: 180 GACADLAALEYGKQIHSHIL-VNGLDFDS-VLGSSLVNLYGK--CGD 222
            AC   +    GK+   H+L +  LD  + +L S+L + YG+  C D
Sbjct: 687 DACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSD 733


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/517 (24%), Positives = 234/517 (45%), Gaps = 106/517 (20%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           +Q+C    S+ +GKQ+H   +K   +   L I N LL MY   G+   +  LF+ +P R+
Sbjct: 262 VQACAELGSLKLGKQIHQLAIKFEFVED-LYILNALLNMYSNNGSLESSHQLFESVPNRD 320

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----------------------------- 102
              WN+MI  +   G  E+++ LF  M  +                              
Sbjct: 321 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLH 380

Query: 103 ----------DFSW-NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     D S  N L+S + +   +++ + +F+ M   + I+WN+MI    RN    
Sbjct: 381 AHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRA 440

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A  LF+ +       ++ +++ + +++ AC D+  L++G+ IH +++ + ++ +  L +
Sbjct: 441 QACELFERMRES---EIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRT 497

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L ++Y                                NCG    AR +F+   D   + 
Sbjct: 498 ALADMY-------------------------------MNCGDEATARDLFEGCPDRDLIS 526

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MI+ Y+ NN+  +ALLLFH+M       ++ T+ +VLS+ + L  L  G+ +H +  
Sbjct: 527 WNAMIASYVKNNQAHKALLLFHRMISEAE-PNSVTIINVLSSFTHLATLPQGQSLHAYVT 585

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           + G                  G+              D  L N  IT+Y+ CG ++ A++
Sbjct: 586 RRGF---------------SLGL--------------DLSLANAFITMYARCGSLQSAEN 616

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           IF+T+P +++ISWN+MI G   NG   +A+  F  M +   R +  +  SV+SAC++   
Sbjct: 617 IFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGF 676

Query: 452 LELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +E+G Q+F + V    +  + +  + +VD   + G I
Sbjct: 677 IEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCI 713



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 234/519 (45%), Gaps = 108/519 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++C   +++  GK +H       +++  + +   ++  Y +CG   DA  +FD M
Sbjct: 56  LPLVLKACAAQNAVERGKSIHRSIQGTDLMDD-VRVGTAVVDFYCKCGFVEDARCVFDAM 114

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSWNMLISGFAKAGELKTAR 123
             R+   WNAM+ G++  G  E+++ L   M ++N      +   L+     A EL+  R
Sbjct: 115 SDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 174

Query: 124 T-----------------------------------LFNDMPRRNAIAWNSMIHCYVRNG 148
                                               LF+ M  RN ++WN+MI  Y   G
Sbjct: 175 GVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVG 234

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              +A+ LF ++   LV+ ++ D   +   + ACA+L +L+ GKQIH       + F+ V
Sbjct: 235 DYFKALELFVQM---LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQL----AIKFEFV 287

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
                                       D + L+AL++ Y+N G +  + ++F+   +  
Sbjct: 288 ---------------------------EDLYILNALLNMYSNNGSLESSHQLFESVPNRD 320

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL--GFLEHGKQV 326
           + +WNSMIS Y +     EA+ LF +M+  GV +D  T+  +LS C  L  G L+ GK +
Sbjct: 321 APLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLK-GKSL 379

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H H  K G+  D  + +ALL  Y++                     LN           +
Sbjct: 380 HAHVIKSGMRIDASLGNALLSMYTE---------------------LNC----------V 408

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           E  + IF  M    +ISWN+MI+ L++N    +A +LF  M + +++ + +++ S+++AC
Sbjct: 409 ESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAAC 468

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            +++ L+ G  +   V    ++ +Q + T+L D Y  CG
Sbjct: 469 EDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG 507



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/526 (24%), Positives = 233/526 (44%), Gaps = 109/526 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           +  LL +C     + +G+ +H + L+ G+ +S   +A  L+  Y+R       LL FD M
Sbjct: 157 MVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLL-FDLM 215

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKND--------------------- 103
             RN  SWNAMI G+  +G   K+L+LF  M     K D                     
Sbjct: 216 VVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGK 275

Query: 104 ---------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                          +  N L++ ++  G L+++  LF  +P R+A  WNSMI  Y   G
Sbjct: 276 QIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFG 335

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA-LEYGKQIHSHILVNGLDFDS 207
              EA+ LF  + S+ V++   D   +  ++  C +LA+ L  GK +H+H++ +G+  D+
Sbjct: 336 CHEEAMDLFIRMQSEGVKK---DERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDA 392

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            LG++L+++Y +                              NC  +   +++FDR    
Sbjct: 393 SLGNALLSMYTEL-----------------------------NC--VESVQKIFDRMKGV 421

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             + WN+MI     N    +A  LF +MR + +  ++ T+ S+L+AC  +  L+ G+ +H
Sbjct: 422 DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIH 481

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G+  K  +  +  + +AL D Y   G  + A                             
Sbjct: 482 GYVMKHSIEINQPLRTALADMYMNCGDEATA----------------------------- 512

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
             + +F   P++ LISWN+MI    +N    +AL LF  M   +   +  ++ +V+S+  
Sbjct: 513 --RDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMIS-EAEPNSVTIINVLSSFT 569

Query: 448 NISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
           ++++L  G+ + A VT  G  L  D  ++ + +  Y +CG ++  E
Sbjct: 570 HLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAE 615



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 171/410 (41%), Gaps = 80/410 (19%)

Query: 24  GKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           GK LH H +K G+ ++++L   N LL MY           +FD M   +  SWN MI   
Sbjct: 376 GKSLHAHVIKSGMRIDASL--GNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILAL 433

Query: 83  MKLGHKEKSLQLFNVMPQKN---------------------DFSWNM------------- 108
            +   + ++ +LF  M +                       DF  ++             
Sbjct: 434 ARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQ 493

Query: 109 -----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                L   +   G+  TAR LF   P R+ I+WN+MI  YV+N  A +A+ LF  +   
Sbjct: 494 PLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRM--- 550

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
            +   + ++  +  V+ +   LA L  G+ +H+++   G  F   L  SL N        
Sbjct: 551 -ISEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRG--FSLGLDLSLAN-------- 599

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
                              A I+ YA CG +  A  +F      + + WN+MI+GY  N 
Sbjct: 600 -------------------AFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNG 640

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVA 342
             ++A+L F +M  +G   +  T  SVLSACS  GF+E G Q+ H       V  +++  
Sbjct: 641 RGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHY 700

Query: 343 SALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKH 391
           S ++D  ++ G   +A +    + +  D  +   ++   SSC    DAK 
Sbjct: 701 SCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALL---SSCRAYSDAKQ 747



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 32/213 (15%)

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNS+I    +   D   L  + +M   GVL + +TL  VL AC++   +E GK +H    
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
              ++DDV V +A++D Y K G   DA  +F  +   D +L N M+  Y   G  E+A  
Sbjct: 81  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 140

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           + R                                M + +LR +  ++ +++ AC   S 
Sbjct: 141 LVR-------------------------------EMGRENLRPNSRTMVALLLACEGASE 169

Query: 452 LELGEQVFARVTIIGL-DSDQIISTSLVDFYCK 483
           L LG  V       G+ DS+  ++T+L+ FY +
Sbjct: 170 LRLGRGVHGYCLRNGMFDSNPHVATALIGFYLR 202



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 44/204 (21%)

Query: 24  GKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           G+ LH +  ++G  L   L +AN  + MY RCG+   A  +F  +P+RN  SWNAMI G+
Sbjct: 577 GQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGY 636

Query: 83  -----------------------------------MKLGHKEKSLQLFNVMPQKNDFS-- 105
                                                 G  E  LQLF+ M Q  + +  
Sbjct: 637 GMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPE 696

Query: 106 ---WNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
              ++ ++   A+ G +  AR   + MP   +A  W +++        A++A  +F++L 
Sbjct: 697 LVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKL- 755

Query: 162 SDLVERLQCDAFILATVIGACADL 185
            D +E +    ++L + + A A L
Sbjct: 756 -DKLEPMNAGNYVLLSNVYATAGL 778



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
           +I+D KH            WNS+I   +   +    L  +  M  L +  +  +L  V+ 
Sbjct: 14  QIKDPKH------------WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLK 61

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ACA  +++E G+ +   +    L  D  + T++VDFYCKCGF++
Sbjct: 62  ACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVE 105


>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 765

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 194/402 (48%), Gaps = 76/402 (18%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
            ++ F  + L++ +AK G ++ A+ +F+ M RRNA+AW +++  YV+N   + A+ LF+E
Sbjct: 105 HEDPFLSSFLVTVYAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEE 164

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +   L        + LA  + AC  L +L+ G+Q+H++I+   +DFD+ +G++L +LY K
Sbjct: 165 M--LLHSECYPSNYTLAIALNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTK 222

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
           CG                              GK+      F R  +   + W + IS  
Sbjct: 223 CG------------------------------GKLEVGLTAFRRIKEKDVISWTAAISAC 252

Query: 280 ISNNEDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
               E  + + +F +M  +   V  +  TL S LS C  +  LE G QVH    K+G   
Sbjct: 253 GEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQCCEVKCLELGIQVHALCTKLGYES 312

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           ++ V ++LL  Y K                               CG I +A+ +F+ M 
Sbjct: 313 NLRVRNSLLYLYLK-------------------------------CGCIVEAQRLFKGMN 341

Query: 398 NKSLISWNSMIVG-----------LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           + +L++WN+MI G           LS     IEAL+LF  +N+  ++ D F+ +SV+S C
Sbjct: 342 DVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVC 401

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + + +LE GEQ+ AR    G  SD ++ +S+++ Y KCG I+
Sbjct: 402 SKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIE 443



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 213/494 (43%), Gaps = 116/494 (23%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   LLQ C  + S    + +H H +K G       +++ L+ +Y +CG    A  +FD 
Sbjct: 75  FYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPF-LSSFLVTVYAKCGRMECAQQVFDH 133

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------------------------ 96
           M RRN  +W  +++G+++    + ++ LF                               
Sbjct: 134 MNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKL 193

Query: 97  -------VMPQKNDFSW---NMLISGFAK-AGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                  ++    DF     N L S + K  G+L+   T F  +  ++ I+W + I    
Sbjct: 194 GEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTAFRRIKEKDVISWTAAISACG 253

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
             G A + VR+F E+  D V+ +Q + + L + +  C ++  LE G Q+H+     G + 
Sbjct: 254 EKGEAMKGVRVFVEMLLDEVQ-VQPNEYTLTSALSQCCEVKCLELGIQVHALCTKLGYES 312

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           +  + +SL+ LY KCG                  C+              +A+R+F    
Sbjct: 313 NLRVRNSLLYLYLKCG------------------CIV-------------EAQRLFKGMN 341

Query: 266 DTSSVMWNSMISGYI-----------SNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
           D + V WN+MI+G+            +  +  EAL LF K+ R+G+  D  T +SVLS C
Sbjct: 342 DVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVC 401

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
           S +  LE G+Q+H    K G + DV+V S++++ Y+K G    A K+F E+ +   IL  
Sbjct: 402 SKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVFLEMSIRTMILWT 461

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           TMIT                               G +Q+G   +AL+LF +M  + +R 
Sbjct: 462 TMIT-------------------------------GFAQHGWSKQALNLFEDMKLVGIRP 490

Query: 435 DKFSLASVISACAN 448
           +  +   V+SAC +
Sbjct: 491 NLVTFVGVLSACGS 504



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 88/366 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDE 66
           LA  L +C + HS+ +G+QLH + +K  +   T  I N L  +Y +CG   +  L  F  
Sbjct: 178 LAIALNACTSLHSLKLGEQLHAYIIKYHVDFDT-SIGNALCSLYTKCGGKLEVGLTAFRR 236

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW-------------- 106
           +  ++  SW A I    + G   K +++F       V  Q N+++               
Sbjct: 237 IKEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQCCEVKCLE 296

Query: 107 ---------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
                                N L+  + K G +  A+ LF  M   N + WN+MI  + 
Sbjct: 297 LGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIAGHA 356

Query: 146 R---------NGFAR--EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
           +         + + +  EA+ LF +LN      ++ D F  ++V+  C+ + ALE G+QI
Sbjct: 357 QMMELSKDNLSAYQKGIEALNLFSKLNRS---GMKPDPFTFSSVLSVCSKMMALEQGEQI 413

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254
           H+  +  G   D V+GSS++N+Y KCG    A+                           
Sbjct: 414 HARTIKTGFLSDVVVGSSMINMYNKCGSIERAS--------------------------- 446

Query: 255 NDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314
               +VF   +  + ++W +MI+G+  +    +AL LF  M+  G+  +  T   VLSAC
Sbjct: 447 ----KVFLEMSIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSAC 502

Query: 315 SSLGFL 320
            S G +
Sbjct: 503 GSAGMV 508



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 149/345 (43%), Gaps = 70/345 (20%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           RN   +EA  L KE N ++      D+     ++  C +  +    + IH HI+  G   
Sbjct: 53  RNLKFQEAFSLAKESNEEV------DSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHE 106

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  L S LV +Y KCG    A Q                               VFD   
Sbjct: 107 DPFLSSFLVTVYAKCGRMECAQQ-------------------------------VFDHMN 135

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGK 324
             ++V W +++ GY+ N+    A+ LF +M  +     ++ TLA  L+AC+SL  L+ G+
Sbjct: 136 RRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIALNACTSLHSLKLGE 195

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           Q+H +  K  V  D  + +AL   Y+K G                              G
Sbjct: 196 QLHAYIIKYHVDFDTSIGNALCSLYTKCG------------------------------G 225

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM--NKLDLRMDKFSLASV 442
           ++E     FR +  K +ISW + I    + G  ++ + +F  M  +++ ++ ++++L S 
Sbjct: 226 KLEVGLTAFRRIKEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSA 285

Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +S C  +  LELG QV A  T +G +S+  +  SL+  Y KCG I
Sbjct: 286 LSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCI 330



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + +L  C+   ++  G+Q+H   +K G L S + + + ++ MY +CG+   A  +F EM
Sbjct: 394 FSSVLSVCSKMMALEQGEQIHARTIKTGFL-SDVVVGSSMINMYNKCGSIERASKVFLEM 452

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
             R    W  MI GF + G  +++L LF  M     + N  ++  ++S    AG +  A 
Sbjct: 453 SIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAF 512

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
             F  M +   I      +  ++   VR G  +EA  L K+++    E      FI + +
Sbjct: 513 NYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEAFDLIKKMDYKASE------FIWSNL 566

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           I  C     LE G    +  L++    D+     L+N Y   G ++  ++V N+M+E
Sbjct: 567 IVGCLSQGNLELGCDA-AEKLLSLKPKDTETYKLLLNAYVSAGRYDDVSRVENIMRE 622


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 216/506 (42%), Gaps = 105/506 (20%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            V  ++H   + +G+    + + N L+ +Y + G    A  +F+E+  R+  SW AM+ G
Sbjct: 59  QVVPEIHAKAITRGLGKDRI-VGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 82  FMKLGHKEKSLQLFNVMPQ---------------------------------------KN 102
           + + G  E++L L+  M +                                         
Sbjct: 118 YAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSE 177

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F  N LI+ + + G  + A  +F DMP R+ + +N++I  + +      A+ +F+E+ S
Sbjct: 178 TFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQS 237

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                L  D   +++++ ACA L  L+ G Q+HS++   G+  D ++  SL++LY KCGD
Sbjct: 238 S---GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGD 294

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
             +A  + N+                                  T+ V+WN ++  +   
Sbjct: 295 VETALVIFNL-------------------------------GNRTNVVLWNLILVAFGQI 323

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
           N+  ++  LF +M+  G+  +  T   +L  C+  G ++ G+Q+H  + K G   D+ V+
Sbjct: 324 NDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVS 383

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
             L+D YSK G    A ++   LK  D +                               
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVV------------------------------- 412

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW SMI G  Q+    +AL  F  M K  +  D   LAS IS CA I ++  G Q+ ARV
Sbjct: 413 SWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARV 472

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIK 488
            + G   D  I  +LV+ Y +CG I+
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIR 498



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 220/501 (43%), Gaps = 87/501 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C +   +  G QLH +  K G ++S   +   LL +Y++CG+   AL++F+  
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAG-MSSDYIMEGSLLDLYVKCGDVETALVIFNLG 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ--------------------- 100
            R N   WN ++  F ++    KS +LF       + P                      
Sbjct: 306 NRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGE 365

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K  F  +M +SG     ++K G L+ AR +   +  ++ ++W SMI  YV++ 
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
           + ++A+  FKE+    +     D   LA+ I  CA + A+  G QIH+ + V+G   D  
Sbjct: 426 YCKDALAAFKEMQKCGI---WPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVS 482

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LVNLY                               A CG++ +A   F+      
Sbjct: 483 IWNALVNLY-------------------------------ARCGRIREAFSSFEEIEHKD 511

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + WN ++SG+  +    EAL +F +M ++GV  +  T  S LSA ++L  ++ GKQ+H 
Sbjct: 512 EITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHA 571

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V +AL+  Y K G   DA   FSE+   + +  NT+IT  S  GR  +
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLE 631

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIE---ALDLFCNMNKLD----------LRMD 435
           A   F  M  + L  + SM         P      +D+F    +LD          +  D
Sbjct: 632 ALDFFDQMKKEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAAD 691

Query: 436 KFSLASVISACANISSLELGE 456
                +++SAC    ++E+GE
Sbjct: 692 AMVWRTLLSACKVHKNIEVGE 712



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 220/517 (42%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L SC        G+ +H    K+G  + T  + N L+ +Y+RCG+   A  +F +M
Sbjct: 146 LSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETF-VGNALITLYLRCGSFRLAERVFYDM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
           P R+  ++N +I G  +  H E +L++F  M                             
Sbjct: 205 PHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K   S + ++ G     + K G+++TA  +FN   R N + WN ++  + +  
Sbjct: 265 QLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQIN 324

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              ++  LF ++ +  +   Q   F    ++  C     ++ G+QIHS  +  G + D  
Sbjct: 325 DLAKSFELFCQMQTAGIRPNQ---FTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMY 381

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +   L+++Y K G    A +VL M+KE D    +++                        
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM------------------------ 417

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
                  I+GY+ +    +AL  F +M++ G+  D   LAS +S C+ +  +  G Q+H 
Sbjct: 418 -------IAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHA 470

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                G   DV + +AL++ Y++ G   +A   F E++  D I  N +++          
Sbjct: 471 RVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVS---------- 520

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                G +Q+G   EAL +F  M++  ++ + F+  S +SA AN
Sbjct: 521 ---------------------GFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASAN 559

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ ++ G+Q+ ARV   G   +  +  +L+  Y KCG
Sbjct: 560 LAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCG 596



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 118/308 (38%), Gaps = 82/308 (26%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  +  C    ++  G Q+H      G  +  + I N L+ +Y RCG   +A   F+E+
Sbjct: 449 LASAISGCAGIKAMRQGLQIHARVYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEI 507

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             ++  +WN ++ GF + G  E++L++F  M Q     N F++                 
Sbjct: 508 EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGK 567

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LIS + K G  + A+  F++M  RN ++WN++I    ++G
Sbjct: 568 QIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627

Query: 149 FAREAVRLFKELNSD---------------------------------------LVERLQ 169
              EA+  F ++  +                                        VE + 
Sbjct: 628 RGLEALDFFDQMKKEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMP 687

Query: 170 --CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
              DA +  T++ AC     +E G+    H+L      DS     L N Y   G + + +
Sbjct: 688 IAADAMVWRTLLSACKVHKNIEVGELAAKHLL-ELEPHDSASYVLLSNAYAVTGKWANRD 746

Query: 228 QVLNMMKE 235
           QV  MM++
Sbjct: 747 QVRKMMRD 754



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 64/123 (52%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D I+ N +I +YS  G +  A+ +F  +  +  +SW +M+ G +QNG   EAL L+  M+
Sbjct: 76  DRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMH 135

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +  +    + L+SV+S+C        G  V A+    G  S+  +  +L+  Y +CG  +
Sbjct: 136 RAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFR 195

Query: 489 MDE 491
           + E
Sbjct: 196 LAE 198


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 174/361 (48%), Gaps = 38/361 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ N ++  +  LG    + +LF  +P++N  SWN+L  G+ K G+L  AR LF++MP R
Sbjct: 77  FTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPER 136

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N   WN+M+      GF  E++  F ++     E +  D F L +V   CA L  +  G+
Sbjct: 137 NVATWNAMVAGLTNLGFDEESLGFFLDMRR---EGMHPDEFGLGSVFRCCAGLRDVVTGR 193

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H++++ +GLD D  +GSSL ++Y +CG       VL M+                   
Sbjct: 194 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS----------------- 236

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                          S V  N++I+G   N +   AL  F  MR  GV  D  T  S +S
Sbjct: 237 --------------LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAIS 282

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +CS L  L  G+Q+HG   K GV   V V + L+  YS+ G   D+ ++F      DT L
Sbjct: 283 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 342

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           L+ MI+ Y   G  + A  +F+ M N     S +++ +++   S +G   E +D F  M 
Sbjct: 343 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 402

Query: 429 K 429
           K
Sbjct: 403 K 403



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 34/314 (10%)

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           A + + +  AC  L  L   +Q+H+    +G   D    + L+  Y   GD  +A ++  
Sbjct: 44  ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 100

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            +   +    + L  GY   G +  AR++FD   + +   WN+M++G  +   D E+L  
Sbjct: 101 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 160

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  MRR G+  D   L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +
Sbjct: 161 FLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR 220

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +++ + + R +P+ S++S N++I G 
Sbjct: 221 -------------------------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGR 249

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +QNG    AL+ FC M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D   
Sbjct: 250 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVV 309

Query: 472 IISTSLVDFYCKCG 485
            + T LV  Y +CG
Sbjct: 310 PVMTCLVHMYSRCG 323



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 298 NGVL-EDASTLAS-VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            GVL  DA+ L S +  AC +L  L   +Q+H  A   G   D   A+ L+  Y+  G  
Sbjct: 36  RGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDL 92

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           + A +LF  +   + +  N +   Y   G +  A+ +F  MP +++ +WN+M+ GL+  G
Sbjct: 93  TAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLG 152

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              E+L  F +M +  +  D+F L SV   CA +  +  G QV A V   GLD D  + +
Sbjct: 153 FDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGS 212

Query: 476 SLVDFYCKCGFIKMDEYYL 494
           SL   Y +CG ++  E  L
Sbjct: 213 SLAHMYMRCGCLQEGEAVL 231



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 281 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 339

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFN 127
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+   + +G  +     F 
Sbjct: 340 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +      +  ++    R+G   EA  L   +       L  D  I  T++ AC
Sbjct: 400 LMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMP------LTPDGVIWKTLLSAC 453

Query: 183 ADLAALEYGKQIHSHIL-VNGLDFDS-VLGSSLVNLYGKCGDFNSANQVL---NMMKEP 236
                 +  ++I   ++ ++  D  S VL S++     + GD +   + +   N+ KEP
Sbjct: 454 KTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEP 512



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 127/324 (39%), Gaps = 59/324 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + + C     +  G+Q+H + ++ G L+  + + + L  MYMRCG   +   +   +
Sbjct: 176 LGSVFRCCAGLRDVVTGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGCLQEGEAVLRML 234

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P  +  S N +I G  + G  E +L+ F +M       +  ++   IS  +    L   +
Sbjct: 235 PSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQ 294

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +   + +    +       ++H Y R G   ++ R+F             D F+L+ +I
Sbjct: 295 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGS-------DTFLLSAMI 347

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            A        YG   H H            G   + L+          Q++N   EP D 
Sbjct: 348 SA--------YG--FHGH------------GQKAIELF---------KQMMNGGAEPSDV 376

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNN---EDTEALLLF 292
              AL+   ++ G   +    F+  T T     SV   + +   +  +   ++ EAL+L 
Sbjct: 377 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 436

Query: 293 HKMRRNGVLEDASTLASVLSACSS 316
             +  +GV+       ++LSAC +
Sbjct: 437 MPLTPDGVI-----WKTLLSACKT 455


>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 885

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 229/517 (44%), Gaps = 115/517 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L+ C +  +++ G  +H + +K G+  +S L ++  L+ +Y +CG+   A  +   M  
Sbjct: 99  MLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVS--LINLYAKCGSLAFARKVLVGMRE 156

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-------------------------- 103
           R+  SW A+I G++  G     ++ +  M ++N                           
Sbjct: 157 RDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKLI 216

Query: 104 -------------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                        F  + L+  +AK GE++ A  +F  MP +N ++WN++++ Y + G  
Sbjct: 217 HLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYAQRGDG 276

Query: 151 REAVRLFKELNSDLVERLQCDA----FILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +  ++LF  +       L+C+     + L+TV+  CA+   L  GK +HS  +    + D
Sbjct: 277 KNVLKLFCRM-------LECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELD 329

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             LG +LV++Y KCG    A +V NM++EPD    SA+I+G    G              
Sbjct: 330 EFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQG-------------- 375

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
                               EA  LFH MR+ GV  +  + ASV+SA +++G L  G+ +
Sbjct: 376 -----------------HSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSI 418

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H   CK G   D  V +AL+  Y K G                                +
Sbjct: 419 HCCICKYGYESDNSVGNALITMYMKSGF-------------------------------V 447

Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
           +D   +F TM N+ L+SWN+++ G     +  + L +FC M    L  + ++   V+ +C
Sbjct: 448 QDGIRVFDTMTNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSC 507

Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           +++ ++  G+QV A +    LD +  + T+L+D Y K
Sbjct: 508 SSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAK 544



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 207/433 (47%), Gaps = 74/433 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C    ++  GK LH   +++          N L+ MY +CG   +AL +F+ +
Sbjct: 298 LSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCN-LVDMYSKCGMAYEALKVFNMI 356

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
              +  +W+A+I G  + GH +++ +LF++M QK    N FS+                 
Sbjct: 357 EEPDIVAWSAIITGLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQ 416

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LI+ + K+G ++    +F+ M  R+ ++WN+++  +    
Sbjct: 417 SIHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGFYDFE 476

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + + +R+F ++   L+E L  + +    V+ +C+ L  + +GKQ+H+HI+ N LD +  
Sbjct: 477 TSDQGLRIFCQM---LMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDF 533

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++L+++Y K                  + CL              DA   F++ T+  
Sbjct: 534 VGTALIDMYAK------------------NRCL-------------EDADVAFNKLTNRD 562

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              W  +I+G+   ++  +A+    +M R G+  +  TLAS LS CS +  L +G+Q+H 
Sbjct: 563 LFTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHS 622

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
            A K G   DV V+SAL+D Y K G   DA  +F  L   DT+  NT+I  YS  G+ + 
Sbjct: 623 LAIKSGHSGDVFVSSALVDMYGKCGCMEDAEAIFKGLFSRDTVAWNTIICGYSQHGQGQK 682

Query: 389 AKHIFRTMPNKSL 401
           A   FR M ++ +
Sbjct: 683 ALEAFRMMLDEDI 695



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 226/517 (43%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++ +    I  GK +HL  +K G+L   L + + L+ +Y + G    A  +F  M
Sbjct: 197 LATVLKASSMCSDIKFGKLIHLEAIKTGLL-LDLFVGSALVDLYAKFGEMELADRVFFGM 255

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P +N  SWNA++ G+ + G  +  L+LF  M +      +++ + ++ G A +G L+  +
Sbjct: 256 PEKNNVSWNALLNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGK 315

Query: 124 TL-----------------------------------FNDMPRRNAIAWNSMIHCYVRNG 148
            L                                   FN +   + +AW+++I    + G
Sbjct: 316 ALHSLSIRRAYELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQG 375

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            ++EA  LF  +    V   Q   F  A+VI A  ++  L  G+ IH  I   G + D+ 
Sbjct: 376 HSQEAAELFHLMRQKGVRPNQ---FSFASVISAATNVGDLYLGQSIHCCICKYGYESDNS 432

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +G++L+ +Y K G      +V + M   D      L+S                      
Sbjct: 433 VGNALITMYMKSGFVQDGIRVFDTMTNRD------LVS---------------------- 464

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
              WN+++SG+       + L +F +M   G++ +  T   VL +CSSL  +  GKQVH 
Sbjct: 465 ---WNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHA 521

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
           H  K  +  +  V +AL+D Y+K     + C                          +ED
Sbjct: 522 HIIKNSLDGNDFVGTALIDMYAK-----NRC--------------------------LED 550

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  + N+ L +W  +I G SQ     +A+     M +  ++ ++F+LAS +S C+ 
Sbjct: 551 ADVAFNKLTNRDLFTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSR 610

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +++L  G+Q+ +     G   D  +S++LVD Y KCG
Sbjct: 611 MATLGNGQQLHSLAIKSGHSGDVFVSSALVDMYGKCG 647



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 175/383 (45%), Gaps = 65/383 (16%)

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
           W  LI+ +AK G L  AR +   M  R+ ++W ++I  YV  G   + V+ + E+     
Sbjct: 131 WVSLINLYAKCGSLAFARKVLVGMRERDVVSWTALIAGYVSEGCGSDGVKAYCEMRK--- 187

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           E +  + F LATV+ A +  + +++GK IH   +  GL  D  +GS+LV+LY K G+   
Sbjct: 188 ENICPNEFTLATVLKASSMCSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMEL 247

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
           A++V   M E ++   +AL++GYA  G   +  ++F R  +      N            
Sbjct: 248 ADRVFFGMPEKNNVSWNALLNGYAQRGDGKNVLKLFCRMLECEMNFTN------------ 295

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
                               TL++VL  C++ G L  GK +H  + +     D  +   L
Sbjct: 296 -------------------YTLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNL 336

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D YSK GM  +A K+F+ ++  D +  + +IT                           
Sbjct: 337 VDMYSKCGMAYEALKVFNMIEEPDIVAWSAIIT--------------------------- 369

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
               GL Q G   EA +LF  M +  +R ++FS ASVISA  N+  L LG+ +   +   
Sbjct: 370 ----GLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICKY 425

Query: 466 GLDSDQIISTSLVDFYCKCGFIK 488
           G +SD  +  +L+  Y K GF++
Sbjct: 426 GYESDNSVGNALITMYMKSGFVQ 448



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 62/304 (20%)

Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
           CA    L  G  IH +++ +GL+ DS L  SL+NL                         
Sbjct: 103 CASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINL------------------------- 137

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
                 YA CG +  AR+V     +   V W ++I+GY+S    ++ +  + +MR+  + 
Sbjct: 138 ------YAKCGSLAFARKVLVGMRERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENIC 191

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +  TLA+VL A S    ++ GK +H  A K G++ D+ V SAL+D Y+K          
Sbjct: 192 PNEFTLATVLKASSMCSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKF--------- 242

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                                 G +E A  +F  MP K+ +SWN+++ G +Q G     L
Sbjct: 243 ----------------------GEMELADRVFFGMPEKNNVSWNALLNGYAQRGDGKNVL 280

Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
            LFC M + ++    ++L++V+  CAN  +L  G+ + +       + D+ +  +LVD Y
Sbjct: 281 KLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNLVDMY 340

Query: 482 CKCG 485
            KCG
Sbjct: 341 SKCG 344



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 149/357 (41%), Gaps = 74/357 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++ +      +++G+ +H    K G   S   + N L+ MYM+ G   D + +FD M
Sbjct: 399 FASVISAATNVGDLYLGQSIHCCICKYG-YESDNSVGNALITMYMKSGFVQDGIRVFDTM 457

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ--------------------- 100
             R+  SWNA++ GF      ++ L++F       ++P                      
Sbjct: 458 TNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGK 517

Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        NDF    LI  +AK   L+ A   FN +  R+   W  +I  + +  
Sbjct: 518 QVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIAGHSQTD 577

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            A +AV+   ++   L E ++ + F LA+ +  C+ +A L  G+Q+HS  + +G   D  
Sbjct: 578 KAEKAVKYLGQM---LREGIKPNEFTLASCLSGCSRMATLGNGQQLHSLAIKSGHSGDVF 634

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + S+LV++                               Y  CG M DA  +F       
Sbjct: 635 VSSALVDM-------------------------------YGKCGCMEDAEAIFKGLFSRD 663

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           +V WN++I GY  + +  +AL  F  M    +  D  T   VL+ACS +G++E GK+
Sbjct: 664 TVAWNTIICGYSQHGQGQKALEAFRMMLDEDIDPDEVTFIGVLAACSYMGWVEEGKK 720



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 31/182 (17%)

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           + +L  C+S G L  G  +HG+  K G+  D                             
Sbjct: 97  SGMLRECASKGNLNEGTAIHGNVIKSGLEPD----------------------------- 127

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
             + L  ++I +Y+ CG +  A+ +   M  + ++SW ++I G    G   + +  +C M
Sbjct: 128 --SHLWVSLINLYAKCGSLAFARKVLVGMRERDVVSWTALIAGYVSEGCGSDGVKAYCEM 185

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            K ++  ++F+LA+V+ A +  S ++ G+ +       GL  D  + ++LVD Y K G +
Sbjct: 186 RKENICPNEFTLATVLKASSMCSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEM 245

Query: 488 KM 489
           ++
Sbjct: 246 EL 247


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 228/503 (45%), Gaps = 81/503 (16%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
           K +H    K   L   + +AN L+  Y++ G   +A  +F  +   N  S+ AMI GF K
Sbjct: 110 KAVHASIFK---LAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAK 166

Query: 85  LGHKEKSLQLFNVMP----QKNDFSW---------------------------------- 106
              + +++++F  M     + N+FS+                                  
Sbjct: 167 SNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFV 226

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N L+  + K G L +   LF++MP R+  +WN++I   V+      A  LF+++    +
Sbjct: 227 SNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRR--I 284

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
           +  + D F L+T++ A   LA++  G++IH+H++  G + +  + ++L+  Y KCG    
Sbjct: 285 DGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKH 343

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
              +   M+  D    + +I+ Y   G  + A  VFD+    +S+ +N+++SG+  N E 
Sbjct: 344 VVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEG 403

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           ++AL  F +M   GV     TL  VL+AC  L   +  KQ+HG   K G   +  + +AL
Sbjct: 404 SKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAAL 463

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI--FRTMPNKSLIS 403
           LD  ++                               CGR+ DA+ +    +      I 
Sbjct: 464 LDMCTR-------------------------------CGRMADAQKMFSQGSFSQSGSII 492

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQVFAR 461
           W SMI G ++N  P EA+ LFC  ++L+  + +DK +  +V+  C  ++  E+G+Q+   
Sbjct: 493 WTSMICGYARNAQPEEAISLFCQ-SQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCH 551

Query: 462 VTIIGLDSDQIISTSLVDFYCKC 484
               G  SD  +  S++  Y KC
Sbjct: 552 ALKSGFLSDLGVGNSIITMYSKC 574



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 177/380 (46%), Gaps = 36/380 (9%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N LI  + K G +  A  +F  +   N +++ +MI  + ++   R+A+ +F  + S  +E
Sbjct: 127 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIE 186

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               + F    ++  C  L  LE G Q+H+ ++  G    + + ++L+ LYGK       
Sbjct: 187 ---LNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGK------- 236

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                   CG ++   ++FD         WN++IS  +      
Sbjct: 237 ------------------------CGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYE 272

Query: 287 EALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            A  LF  MRR +G   D  TL+++L A   L  +  G+++H H  K+G   ++ V +AL
Sbjct: 273 RAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVINAL 331

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +  Y+K G       LF +++V D I    MIT Y   G  + A  +F  MP ++ IS+N
Sbjct: 332 IRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYN 391

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           +++ G  QNG   +AL  FC M +  + +  F+L  V++AC  +   ++ +Q+   +   
Sbjct: 392 AILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKF 451

Query: 466 GLDSDQIISTSLVDFYCKCG 485
           G  S+  I  +L+D   +CG
Sbjct: 452 GFGSNACIEAALLDMCTRCG 471



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 134/260 (51%), Gaps = 34/260 (13%)

Query: 231 NMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
           ++ K  +D  L+ ALI  Y   G + +A +VF   +  + V + +MISG+  +N + +A+
Sbjct: 115 SIFKLAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAM 174

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            +F +MR +G+  +  +  ++L+ C  L  LE G Q+H    K+G ++   V++AL+  Y
Sbjct: 175 EIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLY 234

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
            K                               CG ++    +F  MP++ + SWN++I 
Sbjct: 235 GK-------------------------------CGYLDSVLQLFDEMPHRDIASWNTVIS 263

Query: 410 GLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
            + +      A +LF +M ++D  R+D F+L++++ A   ++S+ +G ++ A V  IG +
Sbjct: 264 SVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFE 322

Query: 469 SDQIISTSLVDFYCKCGFIK 488
           S+  +  +L+ FY KCG IK
Sbjct: 323 SNISVINALIRFYTKCGSIK 342



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 147/363 (40%), Gaps = 106/363 (29%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP------------------------- 57
           VG+++H H +K G   S + + N L++ Y +CG+                          
Sbjct: 308 VGREIHAHVIKIG-FESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAY 366

Query: 58  -----TD-ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWN 107
                TD AL +FD+MP RN  S+NA++ GF + G   K+L  F  M ++     DF+  
Sbjct: 367 MEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLT 426

Query: 108 MLISGFAKAGELKTARTLFN------------------DMPRR----------------- 132
            +++      E K ++ +                    DM  R                 
Sbjct: 427 GVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFS 486

Query: 133 --NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
              +I W SMI  Y RN    EA+ LF +  S L   +  D      V+G C  LA  E 
Sbjct: 487 QSGSIIWTSMICGYARNAQPEEAISLFCQ--SQLEGAMVVDKVASTAVLGVCGTLAFHEM 544

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           GKQIH H L +G   D  +G+S++ +Y KC + + A +V N+M   D             
Sbjct: 545 GKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHD------------- 591

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                              V WN +I+G++ + +  EAL ++ KM + G+  D  T   +
Sbjct: 592 ------------------IVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLI 633

Query: 311 LSA 313
           +SA
Sbjct: 634 ISA 636



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 22/227 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C T     +GKQ+H H LK G L S L + N ++ MY +C N  DA+ +F+ MP  
Sbjct: 532 VLGVCGTLAFHEMGKQIHCHALKSGFL-SDLGVGNSIITMYSKCSNMDDAIKVFNVMPAH 590

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGE--LKTART 124
           +  SWN +I G +     +++L +++ M     + +  ++ ++IS +       +   R 
Sbjct: 591 DIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRR 650

Query: 125 LFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           LF  M     I      + S++      G   EA  +  ++       ++ +A +   ++
Sbjct: 651 LFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMP------IEPEASVWRALL 704

Query: 180 GACADLAALEYGKQIHSHIL-VNGLDFDS-VLGSSLVNLYGK--CGD 222
            AC   +    GK+   H+L +  LD  + +L S+L + YG+  C D
Sbjct: 705 DACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSD 751


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 206/433 (47%), Gaps = 51/433 (11%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP-- 130
           F  ++++  +++LG    +  +F+ MP+KN   W+ LI+G++  G+ + A  L   M   
Sbjct: 53  FVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSA 112

Query: 131 --RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
               N I WN ++    R+G A +AV     ++S   E    DA  ++  + A  D+  +
Sbjct: 113 GVEPNVITWNGLVSGLNRSGRALDAVTALVRMHS---EGFFPDATGVSCALSAVGDVKEV 169

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
             GKQ+H +++  G   D+ + ++L+++YGKCG  +   +V +     D    +AL++G 
Sbjct: 170 SVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGL 229

Query: 249 ANCGKMNDA----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
           +   ++++A    R    R  + + V W S+++  + N  D EA+ LF  M+  GV  ++
Sbjct: 230 SRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNS 289

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
            T+  VL A +++  L HG+  H  + + G + DV V SAL+D Y+K G           
Sbjct: 290 VTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCG----------- 338

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
                               +   A+ IF  MP+++++SWN+MI G + +G    A+ LF
Sbjct: 339 --------------------KARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLF 378

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           C+M K   + D  +   V+ AC+     E G + F       +     IS  +  + C  
Sbjct: 379 CSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNE-----MQQGHGISPRMEHYACMV 433

Query: 485 GFI----KMDEYY 493
             +    K+DE Y
Sbjct: 434 TLLGRSGKLDEAY 446



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 156/323 (48%), Gaps = 11/323 (3%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D  +L + + +C    A    + +H+  +V+GL  D  + SSL++ Y + G   +A  V 
Sbjct: 19  DPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVF 75

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRT----TDTSSVMWNSMISGYISNNEDT 286
           + M E +    SALI+GY+  G    A  + ++      + + + WN ++SG   +    
Sbjct: 76  DRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRAL 135

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +A+    +M   G   DA+ ++  LSA   +  +  GKQVHG+  K G   D  V +AL+
Sbjct: 136 DAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALI 195

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLI 402
           D Y K G   +  ++F E    D    N ++   S   ++ +A  +FR    +    +++
Sbjct: 196 DMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVV 255

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW S++    QNG  +EA+DLF  M  + +  +  ++  V+ A AN+++L  G       
Sbjct: 256 SWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFS 315

Query: 463 TIIGLDSDQIISTSLVDFYCKCG 485
              G   D  + ++LVD Y KCG
Sbjct: 316 LRKGFLHDVYVGSALVDMYAKCG 338



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 27/225 (12%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G+  H   L+KG L+    + + L+ MY +CG    A  +FD MP RN  SWNAMI G+ 
Sbjct: 308 GRSAHCFSLRKGFLHDVY-VGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYA 366

Query: 84  KLGHKEKSLQLFNVM---PQKNDF-SWNMLISGFAKAGELKTARTLFNDMPRRNAIA--- 136
             G    ++QLF  M    QK D  ++  ++   ++AG  +  R  FN+M + + I+   
Sbjct: 367 MHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRM 426

Query: 137 --WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
             +  M+    R+G   EA  L  E+        + D+ I  +++G+C       YG  +
Sbjct: 427 EHYACMVTLLGRSGKLDEAYDLINEMP------FEPDSCIWGSLLGSCR-----VYGNVL 475

Query: 195 HSHILVNGLDFDSVLGSS-----LVNLYGKCGDFNSANQVLNMMK 234
            + +    L F    G++     L N+Y     ++  N+V + MK
Sbjct: 476 LAEVAAEKL-FQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMK 519


>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
          Length = 464

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 212/474 (44%), Gaps = 104/474 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC    +   G+Q+H H +K G  +  + +   L+ MY + G   DA  +FD    R
Sbjct: 79  LLKSCAKSKAFREGQQIHGHVVKLG-YDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHR 137

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A+I G+   G+ + + +LF+ +  K+  SWN +ISG+ +    K A  L+ +M 
Sbjct: 138 HVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMV 197

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
           + N                                  ++ D   + TV+ ACA  + +E 
Sbjct: 198 KTN----------------------------------VKPDESTMVTVVSACAQSSNIEL 223

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +G   +  + ++L+++Y KCG+                            
Sbjct: 224 GRQVHSLIEDHGFGSNLKVVNALMDMYSKCGE---------------------------- 255

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
              M  A R+F    +  ++ WN++I G+   N   EAL LF +M R+G   +  T+ SV
Sbjct: 256 ---METACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSV 312

Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           LSAC+ LG ++ G+ +H +  K   GV +   + ++L+D Y+K                 
Sbjct: 313 LSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAK----------------- 355

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
                         CG IE A  +F +M  +SL SWN+MI G + +G    A DLF  M 
Sbjct: 356 --------------CGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMR 401

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482
           K  +  D  +   ++SAC++   L+LG  +F+ +T      D  I+  L  + C
Sbjct: 402 KSGIEPDDITFVGLLSACSHSGMLDLGRHIFSSMT-----QDYKITPKLEHYGC 450



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  N  +  A++L+  + S     L  +++    +
Sbjct: 23  LPYAISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMIS---LGLLPNSYSFPFL 79

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA   A   G+QIH H++  G D D  + +SL+++Y + G    A++V +       
Sbjct: 80  LKSCAKSKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHV 139

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G    AR++FD       V WN+MISGY+      EAL L+ +M + 
Sbjct: 140 VSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKT 199

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ +V+SAC+    +E G+QVH      G   ++ V +AL+D YSK G    A
Sbjct: 200 NVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETA 259

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C+LF  L   D I                               SWN++I G +      
Sbjct: 260 CRLFQGLVNKDAI-------------------------------SWNTLIGGHTHMNLYK 288

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
           EAL LF  M +     +  ++ SV+SACA++ ++++G    V+    + G+ +   + TS
Sbjct: 289 EALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTS 348

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 349 LIDMYAKCGDIE 360


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 208/440 (47%), Gaps = 46/440 (10%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y+R G    A  +FD+M  RN FSW +++ G+ K+G+ +++++LFN MP+KN  SW
Sbjct: 119 MISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSW 178

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
              + G+A+ G +  AR +FN MP +N IAW +M+  YV N    EA  LF ++      
Sbjct: 179 TTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMP----- 233

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
             Q + +    +I  C +   L    Q+ + +       + V  ++LV    + G    A
Sbjct: 234 --QRNLYSWNIMISGCINANRLNEAIQLFNSMPQR----NEVSWTTLVTGLARNGMMELA 287

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
            +  + M   D    +A+I+ Y + G M +A  +F+   + + V WN++I GY  N  ++
Sbjct: 288 RKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPES 347

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            +L     M R+    + +T+ SVL+AC S+  L    Q HG    +G   D ++A+ L+
Sbjct: 348 NSLRYLILMLRSNFKPNETTITSVLTACDSILEL---MQAHGLVIHLGFEQDKVLANGLV 404

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
            TYS+ G    A  +F +L++ D +    MI  YS+                        
Sbjct: 405 TTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSN------------------------ 440

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-II 465
                  +G    AL +F  M +   + D  +   ++SAC++   ++ G+ +F  ++   
Sbjct: 441 -------HGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAY 493

Query: 466 GLDSDQIISTSLVDFYCKCG 485
           G++      + LVD   + G
Sbjct: 494 GVEPRAEHYSCLVDILGRAG 513



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 159/326 (48%), Gaps = 11/326 (3%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +++ Y+      +A  LF +MP+RN +SWN MI G +      +++QLFN MPQ+N+ SW
Sbjct: 212 MVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSW 271

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             L++G A+ G ++ AR  F+ MP ++  AWN+MI  YV  G   EA  LF  +    + 
Sbjct: 272 TTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNI- 330

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS--SLVNLYGKCGDFN 224
            +  +A I           +       + S+   N     SVL +  S++ L    G   
Sbjct: 331 -VSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTACDSILELMQAHG--- 386

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
               V+++  E D    + L++ Y+ CG +  AR +FD+      V W +MI  Y ++  
Sbjct: 387 ---LVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGC 443

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVAS 343
              AL +F +M R+G   D  T   +LSACS  G ++ G+ +    +C  GV       S
Sbjct: 444 GPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYS 503

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYD 369
            L+D   + G  + A K+ SE+  ++
Sbjct: 504 CLVDILGRAGEMNKAMKVVSEMPPHE 529



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 31/226 (13%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G  +HL F +  +L      AN L+  Y RCG+   A  +FD++  ++  SW AMI  + 
Sbjct: 386 GLVIHLGFEQDKVL------ANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYS 439

Query: 84  KLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFNDM-------PRR 132
             G    +LQ+F  M     + +  ++  L+S  + AG +K  + LF+ M       PR 
Sbjct: 440 NHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPR- 498

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
            A  ++ ++    R G   +A+++  E+        +CD  +L  ++GAC     L    
Sbjct: 499 -AEHYSCLVDILGRAGEMNKAMKVVSEMPPH-----ECDGAVLGALLGACR----LHKDV 548

Query: 193 QIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
            + +HI    ++ +     S   L N Y  CG +N   +V   MKE
Sbjct: 549 GLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKE 594


>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
          Length = 628

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 174/361 (48%), Gaps = 38/361 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ N ++  +  LG    + +LF  +P++N  SWN+L  G+ K G+L  AR LF++MP R
Sbjct: 77  FTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPER 136

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N   WN+M+      GF  E++  F ++     E +  D F L +V   CA L  +  G+
Sbjct: 137 NVATWNAMVAGLTNLGFDEESLGFFLDMRR---EGMHPDEFGLGSVFRCCAGLRDVVTGR 193

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H++++ +GLD D  +GSSL ++Y +CG       VL M+                   
Sbjct: 194 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS----------------- 236

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                          S V  N++I+G   N +   AL  F  MR  GV  D  T  S +S
Sbjct: 237 --------------LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAIS 282

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +CS L  L  G+Q+HG   K GV   V V + L+  YS+ G   D+ ++F      DT L
Sbjct: 283 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 342

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           L+ MI+ Y   G  + A  +F+ M N     S +++ +++   S +G   E +D F  M 
Sbjct: 343 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 402

Query: 429 K 429
           K
Sbjct: 403 K 403



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 34/314 (10%)

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           A + + +  AC  L  L   +Q+H+    +G   D    + L+  Y   GD  +A ++  
Sbjct: 44  ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 100

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            +   +    + L  GY   G +  AR++FD   + +   WN+M++G  +   D E+L  
Sbjct: 101 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 160

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  MRR G+  D   L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +
Sbjct: 161 FLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR 220

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +++ + + R +P+ S++S N++I G 
Sbjct: 221 -------------------------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGR 249

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +QNG    AL+ FC M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D   
Sbjct: 250 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVV 309

Query: 472 IISTSLVDFYCKCG 485
            + T LV  Y +CG
Sbjct: 310 PVMTCLVHMYSRCG 323



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 295 MRR--NGVL-EDASTLAS-VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +RR   GVL  DA+ L S +  AC +L  L   +Q+H  A   G   D   A+ L+  Y+
Sbjct: 31  LRRPFRGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYA 87

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
             G  + A +LF  +   + +  N +   Y   G +  A+ +F  MP +++ +WN+M+ G
Sbjct: 88  DLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAG 147

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
           L+  G   E+L  F +M +  +  D+F L SV   CA +  +  G QV A V   GLD D
Sbjct: 148 LTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRD 207

Query: 471 QIISTSLVDFYCKCGFIKMDEYYL 494
             + +SL   Y +CG ++  E  L
Sbjct: 208 MCVGSSLAHMYMRCGCLQEGEAVL 231



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 281 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 339

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFN 127
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+   + +G  +     F 
Sbjct: 340 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 399

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +      +  ++    R+G   EA  L       L   L  D  I  T++ AC
Sbjct: 400 LMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALI------LSMPLTPDGVIWKTLLSAC 453

Query: 183 ADLAALEYGKQIHSHIL-VNGLDFDS-VLGSSLVNLYGKCGDFNSANQVL---NMMKEP 236
                 +  ++I   ++ ++  D  S VL S++     + GD +   + +   N+ KEP
Sbjct: 454 KTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEP 512



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 127/324 (39%), Gaps = 59/324 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + + C     +  G+Q+H + ++ G L+  + + + L  MYMRCG   +   +   +
Sbjct: 176 LGSVFRCCAGLRDVVTGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGCLQEGEAVLRML 234

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P  +  S N +I G  + G  E +L+ F +M       +  ++   IS  +    L   +
Sbjct: 235 PSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQ 294

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +   + +    +       ++H Y R G   ++ R+F             D F+L+ +I
Sbjct: 295 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-------FGYCGSDTFLLSAMI 347

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            A        YG   H H            G   + L+          Q++N   EP D 
Sbjct: 348 SA--------YG--FHGH------------GQKAIELF---------KQMMNGGAEPSDV 376

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNN---EDTEALLLF 292
              AL+   ++ G   +    F+  T T     SV   + +   +  +   ++ EAL+L 
Sbjct: 377 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 436

Query: 293 HKMRRNGVLEDASTLASVLSACSS 316
             +  +GV+       ++LSAC +
Sbjct: 437 MPLTPDGVI-----WKTLLSACKT 455


>gi|357130454|ref|XP_003566863.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Brachypodium distachyon]
          Length = 608

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/554 (25%), Positives = 239/554 (43%), Gaps = 121/554 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMPR 69
           LLQ C    S+  G+Q+H   +K+G        I  +L   Y RCG   DA   FD +P+
Sbjct: 73  LLQCCVAAGSLRAGRQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALDDAERAFDALPK 132

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKN---------------------- 102
           +N F+W A+I  + + G   +++  +  M     P  N                      
Sbjct: 133 KNAFAWAAVIGLWSRAGLHARAVAGYVDMLEAGVPADNFVVPNVLKACAGIGMIETGRAL 192

Query: 103 -DFSWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
             ++W             L+  + K GE+  AR +F+ MP    + WNSM+  Y+ NG  
Sbjct: 193 HAYAWKAGFGECVYVLSSLVDFYGKCGEVDDAREVFDAMPATTVVTWNSMLMGYINNGRI 252

Query: 151 REAVRLFKELNSD--LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            +AV LF ++  +  L  R+   +F+ A+V     DL A + G+Q H+  + +GL+ D +
Sbjct: 253 DDAVDLFYQMRVEGVLPTRVSVLSFLSASV-----DLEAADGGRQGHAVAVSSGLEMDVI 307

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           LG+S++N Y K G   +A  V   M E D                               
Sbjct: 308 LGTSIINFYCKVGLVEAAEAVFKQMVERD------------------------------- 336

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           ++ WN MI+GY+ + +  +AL+   +M R+G+  D  TLA ++ A       E G+  HG
Sbjct: 337 TITWNLMIAGYLQDEQIDKALITCQRMLRSGLRFDCVTLACIIRAYRESCNTEMGRAAHG 396

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY-------- 380
           +A +  +  D  VA  L++ Y        A ++F  +   D ++  TMI+ Y        
Sbjct: 397 YAVRNNLESDRAVACGLIELYMSTERTEYARRVFDVMSCRDIVMCKTMISAYEDHGMSTE 456

Query: 381 ----------------SSC-----------GRIEDAKHIF------RTMPNKSLISWNSM 407
                           ++C           G+I++A  IF      +T PN  L +W+ +
Sbjct: 457 ARKLLYQMQLEGISPTAACWDSVISVFMKNGQIDEALQIFNEMLLTKTRPN--LRTWSLL 514

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I GLSQNG   E ++L C M +++        ++ + A    +S++ G+ V A +   GL
Sbjct: 515 ISGLSQNGMHHEVMNLCCKMQEVEQAPSPTIFSAALLAMKTAASVQYGKAVHACIVKKGL 574

Query: 468 DSDQIISTSLVDFY 481
              + +  SL++ Y
Sbjct: 575 LLSKSVIQSLLNMY 588



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 130/282 (46%), Gaps = 37/282 (13%)

Query: 221 GDFNSANQV-LNMMKEPDDFCLSALISG-----YANCGKMNDARRVFDRTTDTSSVMWNS 274
           G   +  QV    +K    +C  A I       YA CG ++DA R FD     ++  W +
Sbjct: 81  GSLRAGRQVHAAAVKRGPYYCRHAYIGTKLAVFYARCGALDDAERAFDALPKKNAFAWAA 140

Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
           +I  +        A+  +  M   GV  D   + +VL AC+ +G +E G+ +H +A K G
Sbjct: 141 VIGLWSRAGLHARAVAGYVDMLEAGVPADNFVVPNVLKACAGIGMIETGRALHAYAWKAG 200

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
             + V V S+L+D Y K                               CG ++DA+ +F 
Sbjct: 201 FGECVYVLSSLVDFYGK-------------------------------CGEVDDAREVFD 229

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
            MP  ++++WNSM++G   NG   +A+DLF  M    +   + S+ S +SA  ++ + + 
Sbjct: 230 AMPATTVVTWNSMLMGYINNGRIDDAVDLFYQMRVEGVLPTRVSVLSFLSASVDLEAADG 289

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           G Q  A     GL+ D I+ TS+++FYCK G ++  E    Q
Sbjct: 290 GRQGHAVAVSSGLEMDVILGTSIINFYCKVGLVEAAEAVFKQ 331



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 20/231 (8%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           +SCNT     +G+  H + ++   L S   +A  L+++YM       A  +FD M  R+ 
Sbjct: 384 ESCNTE----MGRAAHGYAVRNN-LESDRAVACGLIELYMSTERTEYARRVFDVMSCRDI 438

Query: 73  FSWNAMIEGFMKLGHKEKS------LQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
                MI  +   G   ++      +QL  + P      W+ +IS F K G++  A  +F
Sbjct: 439 VMCKTMISAYEDHGMSTEARKLLYQMQLEGISPTAA--CWDSVISVFMKNGQIDEALQIF 496

Query: 127 NDM----PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           N+M     R N   W+ +I    +NG   E + L  ++    VE+        A ++ A 
Sbjct: 497 NEMLLTKTRPNLRTWSLLISGLSQNGMHHEVMNLCCKMQE--VEQAPSPTIFSAALL-AM 553

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
              A+++YGK +H+ I+  GL     +  SL+N+YG   D  +   +L ++
Sbjct: 554 KTAASVQYGKAVHACIVKKGLLLSKSVIQSLLNMYGSFSDRGTVESLLRLL 604


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 191/384 (49%), Gaps = 36/384 (9%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C        G+Q+H  F+K  ++     + N L+ +Y R G    A  + D MP R
Sbjct: 116 VLKACAAFCGFEEGRQIHGLFMKSDLVTDVF-VENTLINVYGRSGYFEIARKVLDRMPVR 174

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  SWN+++  ++  G  E++  LF+ M ++N  SWN +ISG+A AG +K AR +F+ MP
Sbjct: 175 DAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMP 234

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN+M+  Y   G   E + +F  +  D  ER   D F L  V+ ACA L +L  
Sbjct: 235 VKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAER--PDGFTLVNVLSACASLGSLSQ 292

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+ +H +I  +G++ +  + ++LV++Y KC                              
Sbjct: 293 GEWVHVYIDKHGIEIEGFVATALVDMYSKC------------------------------ 322

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
            GK++ A  VF  T+      WNS+I+G   +    +AL +F +M   G   +  T   V
Sbjct: 323 -GKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 381

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-LLDTYSKRGMPSDACKLFSELKVYD 369
           LSAC+ +G L+  +++      V  I+  I     ++D   + G   +A +L +E+   +
Sbjct: 382 LSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADE 441

Query: 370 -TILLNTMITVYSSCGRIEDAKHI 392
            +ILL +++      G++E A+ I
Sbjct: 442 ASILLESLLGACKRFGKLEQAERI 465



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 180/393 (45%), Gaps = 69/393 (17%)

Query: 102 NDFSWNMLISGFAKAGELKT---ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
           + FS + L++  A   E KT   A ++ N +   N    NS+I  Y  +     A+ +F+
Sbjct: 40  DTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFR 99

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
           E+   L+  +  D +    V+ ACA     E G+QIH   + + L  D  + ++L+N+YG
Sbjct: 100 EM---LLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYG 156

Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
           + G F  A +VL+ M   D    ++L+S Y + G + +AR +FD   + +   WN MISG
Sbjct: 157 RSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISG 216

Query: 279 YISNNEDTEALLLFHKMR-------------------RNGVLE-------------DAST 306
           Y +     EA  +F  M                     N VLE             D  T
Sbjct: 217 YAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFT 276

Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
           L +VLSAC+SLG L  G+ VH +  K G+  +  VA+AL+D YSK               
Sbjct: 277 LVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSK--------------- 321

Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
                           CG+I+ A  +FR    + + +WNS+I GLS +G   +AL++F  
Sbjct: 322 ----------------CGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSE 365

Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           M     + +  +   V+SAC ++  L+   ++F
Sbjct: 366 MVYEGFKPNGITFIGVLSACNHVGLLDQARKLF 398



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 35/286 (12%)

Query: 237 DDFCLSALISGYANCGK---MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
           D F  S L++  A   +   ++ A  + +R    +    NS+I  Y +++    AL +F 
Sbjct: 40  DTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFR 99

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
           +M    V  D  +   VL AC++    E G+Q+HG   K  ++ DV V + L++ Y + G
Sbjct: 100 EMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSG 159

Query: 354 -----------MP--------------------SDACKLFSELKVYDTILLNTMITVYSS 382
                      MP                     +A  LF E++  +    N MI+ Y++
Sbjct: 160 YFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAA 219

Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLAS 441
            G +++A+ +F +MP K ++SWN+M+   +  G   E L++F  M +    R D F+L +
Sbjct: 220 AGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVN 279

Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           V+SACA++ SL  GE V   +   G++ +  ++T+LVD Y KCG I
Sbjct: 280 VLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKI 325



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 40/191 (20%)

Query: 311 LSACSS------LGFLEHGK------QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           +SACSS      L F E  K      Q H    K G+  D   AS L+   +    P   
Sbjct: 1   MSACSSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEP--- 57

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                           T+   +S   RIE         PN    + NS+I   + + +P 
Sbjct: 58  ---------------KTVSYAHSILNRIES--------PNG--FTHNSVIRAYANSSTPE 92

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
            AL +F  M    +  DK+S   V+ ACA     E G Q+        L +D  +  +L+
Sbjct: 93  IALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLI 152

Query: 479 DFYCKCGFIKM 489
           + Y + G+ ++
Sbjct: 153 NVYGRSGYFEI 163


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 212/475 (44%), Gaps = 92/475 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R      A  LFD+MP R+ FSWN M+ G+++      + +LF++MP+K+  
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD- 163
           SWN L+SG+A+ G +  AR +F++MP +N+I+WN ++  YV NG   EA  LF E  SD 
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF-ESKSDW 202

Query: 164 -----------------------LVERLQC-DAFILATVIGACADLAALEYGKQIHSHIL 199
                                  L +++   DA    T+I   A    L   +++     
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN---- 255
                 D    +++V+ Y + G  + A    + M E ++   +A+I+GY    KM+    
Sbjct: 263 TR----DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 256 ---------------------------DARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                       AR+ FD       V W ++I+GY  +    EA
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L +F +++++G   + +T    LS C+ +  LE GKQ+HG A K+G      V +ALL  
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G   +A   F  ++  D +  NTM+  Y        A+H F               
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGY--------ARHGFGR------------- 477

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
                     +AL +F +M    ++ D+ ++  V+SAC++   L+ G + F  +T
Sbjct: 478 ----------QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 200/417 (47%), Gaps = 19/417 (4%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +   WN  I   M+ GH + +L +FN MP+++  S+N +ISG+ +  +   AR LF+ MP
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+  +WN M+  YVRN    +A RLF     DL+   + D     +++   A    ++ 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLF-----DLMP--EKDVVSWNSLLSGYAQNGYVDE 160

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            +++      N  + +S+  + L+  Y   G    A  +     + D    + L+ G+  
Sbjct: 161 AREVFD----NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVR 216

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
             K+ DAR +FD+     ++ WN+MISGY      ++A  LF +        D  T  ++
Sbjct: 217 KKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAM 272

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +S     G L+  K       +     + +  +A++  Y +      A +LF  +   + 
Sbjct: 273 VSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNI 328

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
              NTMIT Y   G I  A+  F  MP +  +SW ++I G +Q+G   EAL++F  + + 
Sbjct: 329 SSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD 388

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
              +++ +    +S CA+I++LELG+Q+  +   +G  +   +  +L+  Y KCG I
Sbjct: 389 GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 169/367 (46%), Gaps = 73/367 (19%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y++ G   +A   FDEMP +N  S+NAMI G+++    + + +LF  MP +N  SW
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW 331

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +I+G+ + G++  AR  F+ MP+R+ ++W ++I  Y ++G   EA+ +F E+  D  E
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD-GE 390

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            L    F  A  +  CAD+AALE GKQIH   +  G      +G++L+ +Y K       
Sbjct: 391 SLNRATFGCA--LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK------- 441

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                   CG +++A   F+   +   V WN+M++GY  +    
Sbjct: 442 ------------------------CGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGR 477

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +AL +F  M+  GV  D  T+  VLSACS  G L+ G +                     
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEY-------------------- 517

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNT----MITVYSSCGRIEDAKHIFRTMP-NKSL 401
                          +S  K Y  I  +     MI +    GR+E+A+ + R MP     
Sbjct: 518 --------------FYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563

Query: 402 ISWNSMI 408
            SW +++
Sbjct: 564 ASWGALL 570



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 12/256 (4%)

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D D +  +  ++ + + G  +SA  V N M        +A+ISGY    K N AR +FD+
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             +     WN M++GY+ N    +A  LF  M      +D  +  S+LS  +  G+++  
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEA 161

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           ++V  +  +     + I  + LL  Y   G   +AC LF     +D I  N ++  +   
Sbjct: 162 REVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK 217

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
            ++ DA+ +F  MP +  ISWN+MI G +Q G   +A  LF      D+    F+  +++
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMV 273

Query: 444 SACANISSLELGEQVF 459
           S       L+  +  F
Sbjct: 274 SGYVQNGMLDEAKTFF 289



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G       + N LL MY +CG+  +A   F+ +  ++
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCF-VGNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN M+ G+ + G   ++L +F  M     + ++ +   ++S  +  G L      F 
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519

Query: 128 DMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +   S     MI    R G   EA  L + +        Q  A     ++GA 
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP------FQPGAASWGALLGAS 573

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 E G++  + ++      +S +   L NLY   G +  A+++ + M++
Sbjct: 574 RIHGNTELGEKA-AEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRD 625


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 215/479 (44%), Gaps = 73/479 (15%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S    K+LH H ++  +      +++ +    +   N   A L+F+++       WN MI
Sbjct: 29  STDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMI 88

Query: 80  EGFMKLGHKEKSLQLFNVMPQKND------------------------------------ 103
            G  +  H  +++ ++  M  +                                      
Sbjct: 89  RGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFE 148

Query: 104 ---FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
              F  N LI  +A  G+L  A+ +F+ M  R+ ++WN++I  Y +    +E +RLF  +
Sbjct: 149 SYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAM 208

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
            +     ++ DA  +  +I AC+ L   E+   +  +I  N L+ D  LG++L+++YG+ 
Sbjct: 209 TA---ANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRR 265

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
                A  V + M+E +    +AL+ G+A  G +  AR++FD       + W SMI+GY 
Sbjct: 266 SLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYS 325

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
             ++ ++A+ LF +M    V  D  T+ASVLSAC+ LG L+ G  VH +  + GV  D+ 
Sbjct: 326 QASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIY 385

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           V ++L+D Y K GM   A ++F  +K                               +K 
Sbjct: 386 VGNSLIDMYCKCGMVEKALEVFHRMK-------------------------------DKD 414

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            +SW S+I GL+ NG    ALDLF  M +  ++    +   ++ ACA+   +  G + F
Sbjct: 415 SVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYF 473



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 179/370 (48%), Gaps = 34/370 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A  +FN +     + WN MI    ++    EA+ ++  ++    + +  +   L  +
Sbjct: 66  LHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHH---QGITGNNLTLIFL 122

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
             ACA ++ +  G++IH H L   L F+S L                             
Sbjct: 123 FKACARVSDIVSGRKIHVHAL--KLGFESYL----------------------------- 151

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F  +ALI  YA CG++  A+++FD   D   V WN++I GY   N+  E L LF  M   
Sbjct: 152 FVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAA 211

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            +  DA T+  ++ ACS LG  E    +  +  +  +  DV + + L+D Y +R +   A
Sbjct: 212 NIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELA 271

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
             +F  ++  + +  N ++  ++  G +  A+ +F  MP + +ISW SMI G SQ     
Sbjct: 272 QGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFS 331

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           +A+ LF  M    ++ DK ++ASV+SACA++  L++G  V   +   G+ +D  +  SL+
Sbjct: 332 DAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLI 391

Query: 479 DFYCKCGFIK 488
           D YCKCG ++
Sbjct: 392 DMYCKCGMVE 401



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 166/395 (42%), Gaps = 112/395 (28%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L ++C     I  G+++H+H LK G   S L ++N L+ MY  CG    A  +FD M  R
Sbjct: 122 LFKACARVSDIVSGRKIHVHALKLG-FESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDR 180

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW----- 106
           +  SWN +I G+ +    ++ L+LF+ M   N                   D+ +     
Sbjct: 181 DLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMV 240

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI--HCYVRN-- 147
                          N LI  + +    + A+ +F+ M  RN ++WN+++  H  V N  
Sbjct: 241 KYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLT 300

Query: 148 ----------------------GFAR-----EAVRLFKELNSDLVERLQCDAFILATVIG 180
                                 G+++     +AV+LF+E+   +  +++ D   +A+V+ 
Sbjct: 301 AARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEM---MAAKVKPDKVTVASVLS 357

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           ACA L  L+ G  +H +I  +G+  D  +G+SL+++Y KCG    A +V + MK+ D   
Sbjct: 358 ACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVS 417

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
            +++ISG A  G  N                                AL LF +M R GV
Sbjct: 418 WTSVISGLAVNGFAN-------------------------------SALDLFSQMLREGV 446

Query: 301 LEDASTLASVLSACSSLGFLEHG-------KQVHG 328
                T   +L AC+  G +  G       + VHG
Sbjct: 447 QPTHGTFVGILLACAHAGLVNKGLEYFESMESVHG 481



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 32/248 (12%)

Query: 237 DDFCLSALISGYA-NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
           D F +S +I  Y+ +   ++ A  VF++    + V+WN MI G   ++   EA+ ++ +M
Sbjct: 48  DPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRM 107

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
              G+  +  TL  +  AC+ +  +  G+++H HA K+G    + V++AL+  Y+  G  
Sbjct: 108 HHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQL 167

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
             A K+F  +   D +  NT+I  YS   + +                            
Sbjct: 168 GFAQKMFDGMLDRDLVSWNTLICGYSQYNKYK---------------------------- 199

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              E L LF  M   +++ D  ++  +I AC+++   E  + +   +    L+ D  +  
Sbjct: 200 ---EVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGN 256

Query: 476 SLVDFYCK 483
           +L+D Y +
Sbjct: 257 TLIDMYGR 264



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)

Query: 369 DTILLNTMITVYS-SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
           D  L++ +I  YS S   +  A  +F  +   +L+ WN MI GLSQ+  P+EA+ ++  M
Sbjct: 48  DPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRM 107

Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +   +  +  +L  +  ACA +S +  G ++      +G +S   +S +L+  Y  CG
Sbjct: 108 HHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCG 165


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 230/529 (43%), Gaps = 117/529 (22%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP------IANRLLQMYMRCG 55
           ++ ++  A +L+ C    ++  G+QLH    K      T P      +A +L+ MY +CG
Sbjct: 77  NSPVEAFAYVLELCGKRRAVSQGRQLHSRIFK------TFPSFELDFLAGKLVFMYGKCG 130

Query: 56  NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------- 99
           +  DA  +FDEMP R  F+WN MI  ++  G    +L L+  M                 
Sbjct: 131 SLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLK 190

Query: 100 -----------------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRR-NAI 135
                                      F  N L+S +AK  +L  AR LF+    + +A+
Sbjct: 191 ACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAV 250

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            WNS++  Y  +G + E + LF+E++   +     +++ + + + AC   +  + GK+IH
Sbjct: 251 LWNSILSSYSTSGKSLETLELFREMH---MTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           + +L                   K    +S   V N           ALI+ Y  CGKM 
Sbjct: 308 ASVL-------------------KSSTHSSELYVCN-----------ALIAMYTRCGKMP 337

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A R+  +  +   V WNS+I GY+ N    EAL  F  M   G   D  ++ S+++A  
Sbjct: 338 QAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASG 397

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L  L  G ++H +  K G   ++ V + L+D YSK       C L              
Sbjct: 398 RLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK-------CNL-------------- 436

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
             T Y   GR       F  M +K LISW ++I G +QN   +EAL+LF ++ K  + +D
Sbjct: 437 --TCY--MGR------AFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 486

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  L S++ A + + S+ + +++   +   GL  D +I   LVD Y KC
Sbjct: 487 EMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKC 534



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/516 (23%), Positives = 221/516 (42%), Gaps = 108/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     I  G +LH   +K G  +ST  I N L+ MY +  + + A  LFD    +
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLG-YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK 246

Query: 71  -NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW------------------- 106
            +   WN+++  +   G   ++L+LF  M    P  N ++                    
Sbjct: 247 GDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEI 306

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N LI+ + + G++  A  +   M   + + WNS+I  YV+N  
Sbjct: 307 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 366

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            +EA+  F ++   +    + D   + ++I A   L+ L  G ++H++++ +G D +  +
Sbjct: 367 YKEALEFFSDM---IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 423

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++L+++Y KC                        ++ Y          R F R  D   
Sbjct: 424 GNTLIDMYSKCN-----------------------LTCYMG--------RAFLRMHDKDL 452

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W ++I+GY  N+   EAL LF  + +  +  D   L S+L A S L  +   K++H H
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G++D                                T++ N ++ VY  C  +  A
Sbjct: 513 ILRKGLLD--------------------------------TVIQNELVDVYGKCRNMGYA 540

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F ++  K ++SW SMI   + NG+  EA++LF  M +  L  D  +L  ++SA A++
Sbjct: 541 TRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASL 600

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           S+L  G ++   +   G   +  I+ ++VD Y  CG
Sbjct: 601 SALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCG 636



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 207/483 (42%), Gaps = 105/483 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+      +GK++H   LK    +S L + N L+ MY RCG    A  +  +M   +
Sbjct: 291 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 350

Query: 72  CFSWNAMIEGFMK----------------LGHKEKSLQLFNVMPQKNDFS---------- 105
             +WN++I+G+++                 GHK   + + +++      S          
Sbjct: 351 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHA 410

Query: 106 ------W-------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                 W       N LI  ++K          F  M  ++ I+W ++I  Y +N    E
Sbjct: 411 YVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVE 470

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF+++     +R++ D  IL +++ A + L ++   K+IH HIL  GL  D+V+ + 
Sbjct: 471 ALELFRDVAK---KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNE 526

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++YGKC +                        GYA         RVF+       V W
Sbjct: 527 LVDVYGKCRNM-----------------------GYAT--------RVFESIKGKDVVSW 555

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
            SMIS    N  ++EA+ LF +M   G+  D+  L  +LSA +SL  L  G+++H +  +
Sbjct: 556 TSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLR 615

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
            G   +  +A A++D Y        AC                       CG ++ AK +
Sbjct: 616 KGFCLEGSIAVAVVDMY--------AC-----------------------CGDLQSAKAV 644

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  +  K L+ + SMI     +G    A++LF  M   ++  D  S  +++ AC++   L
Sbjct: 645 FDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLL 704

Query: 453 ELG 455
           + G
Sbjct: 705 DEG 707



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 65/325 (20%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMM 233
            A V+  C    A+  G+Q+HS I      F+   L   LV +YGK              
Sbjct: 83  FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGK-------------- 128

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                            CG ++DA +VFD   D ++  WN+MI  Y+SN E   AL L+ 
Sbjct: 129 -----------------CGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYW 171

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            MR  GV    S+  ++L AC+ L  +  G ++H    K+G      + +AL+  Y+K  
Sbjct: 172 NMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKND 231

Query: 354 MPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
             S A +LF   +   D +L N++++ YS+ G+                           
Sbjct: 232 DLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK--------------------------- 264

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
                +E L+LF  M+      + +++ S ++AC   S  +LG+++ A V      S ++
Sbjct: 265 ----SLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 473 -ISTSLVDFYCKCGFIKMDEYYLMQ 496
            +  +L+  Y +CG +   E  L Q
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQ 345



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 136/340 (40%), Gaps = 73/340 (21%)

Query: 23  VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
            G +LH + +K G  +S L + N L+ MY +C         F  M  ++  SW  +I G+
Sbjct: 404 AGMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGY 462

Query: 83  MKLGHKEKSLQLFNVMPQK--------------------------------------NDF 104
            +     ++L+LF  + +K                                      +  
Sbjct: 463 AQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV 522

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N L+  + K   +  A  +F  +  ++ ++W SMI     NG   EAV LF+ +   +
Sbjct: 523 IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM---V 579

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
              L  D+  L  ++ A A L+AL  G++IH ++L  G   +  +  ++V++Y       
Sbjct: 580 ETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMY------- 632

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                   A CG +  A+ VFDR      + + SMI+ Y  +  
Sbjct: 633 ------------------------ACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGC 668

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
              A+ LF KMR   V  D  +  ++L ACS  G L+ G+
Sbjct: 669 GKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGR 708



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 48/282 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++ +   S+ + K++H H L+KG+L++   I N L+ +Y +C N   A  +F+ +
Sbjct: 490 LGSILRASSVLKSMLIVKEIHCHILRKGLLDTV--IQNELVDVYGKCRNMGYATRVFESI 547

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------------- 102
             ++  SW +MI      G++ ++++LF  M +                           
Sbjct: 548 KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGR 607

Query: 103 DFSWNMLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           +    +L  GF              A  G+L++A+ +F+ + R+  + + SMI+ Y  +G
Sbjct: 608 EIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHG 667

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             + AV LF ++     E +  D      ++ AC+    L+ G+     I+ +  + +  
Sbjct: 668 CGKAAVELFDKMRH---ENVSPDHISFLALLYACSHAGLLDEGRGFLK-IMEHEYELEPW 723

Query: 209 LGS--SLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 247
                 LV++ G+      A + + MMK EP      AL++ 
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAA 765


>gi|297810463|ref|XP_002873115.1| EMB175 [Arabidopsis lyrata subsp. lyrata]
 gi|297318952|gb|EFH49374.1| EMB175 [Arabidopsis lyrata subsp. lyrata]
          Length = 896

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 238/525 (45%), Gaps = 80/525 (15%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +D    LL+    +H + V K +H  FLK  +      + N L+  Y++ G P +A L+F
Sbjct: 80  VDGFFYLLRLSAQYHDVEVTKAVHASFLK--LREEKTRLGNALISTYLKLGFPREAFLVF 137

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISG------- 112
             +      S+ A+I GF +L  + ++L++F  M      Q N++++  +++        
Sbjct: 138 VSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGIVQPNEYTFVAILTACVRVSRF 197

Query: 113 ---------FAKAGELKTART---------------------LFNDMPRRNAIAWNSMIH 142
                      K+G L +                        LF+++P R+  +WN++I 
Sbjct: 198 SLGIQIHGLIVKSGFLNSVFVGNSLMSLYSKDSGSSCDDVLKLFDEIPHRDVASWNTVIS 257

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
             V+ G + +A  LF E+N   VE L  D F L+T++ +C D + L  G+++H   +  G
Sbjct: 258 SLVKEGKSHKAFNLFYEMNR--VEGLGVDCFTLSTLLSSCTDSSDLLRGRELHGRAIRIG 315

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
           L  +  + ++L+  Y K GD      +  MM   D    + +I+ Y   G ++ A  +F+
Sbjct: 316 LMQELSVNNALIGFYSKFGDMKKVESLYEMMMVQDAVTFTEMITAYMAFGMVDSAVEIFE 375

Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
             T+ +++ +N++++G+  N    +AL LF +M + GV     +L S + AC  +     
Sbjct: 376 NITEKNTITYNALMAGFCRNGHGLKALKLFTEMLQRGVELTDFSLTSAVDACGLVSEKRV 435

Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
            +Q+HG   K G + +  + +ALLD  ++                               
Sbjct: 436 SEQIHGFCIKFGCLLNPCIQTALLDMCTR------------------------------- 464

Query: 383 CGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFC-NMNKLDLRMDKFSL 439
           C R+ DA+ +F   P+      +  S++ G ++NG P +AL LF   + + +L +D+ SL
Sbjct: 465 CERMADAEEMFEQWPSNLDRSKATTSILGGYARNGLPDKALSLFHRTLCEEELFLDEVSL 524

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             +++ C  +   E+G Q+       G  SD  +  SL+  Y KC
Sbjct: 525 TLILAVCGTLGFREMGYQIHCYALKAGYFSDVCLGNSLISMYSKC 569



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 172/371 (46%), Gaps = 64/371 (17%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NA+I  + K G  +K   L+ +M  ++  ++  +I+ +   G + +A  +F ++  +N I
Sbjct: 324 NALIGFYSKFGDMKKVESLYEMMMVQDAVTFTEMITAYMAFGMVDSAVEIFENITEKNTI 383

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            +N+++  + RNG   +A++LF E+   L   ++   F L + + AC  ++     +QIH
Sbjct: 384 TYNALMAGFCRNGHGLKALKLFTEM---LQRGVELTDFSLTSAVDACGLVSEKRVSEQIH 440

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
              +  G   +  + ++L+++  +C     A ++    + P +                 
Sbjct: 441 GFCIKFGCLLNPCIQTALLDMCTRCERMADAEEMFE--QWPSNL---------------- 482

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK-MRRNGVLEDASTLASVLSAC 314
                 DR+  T+S++      GY  N    +AL LFH+ +    +  D  +L  +L+ C
Sbjct: 483 ------DRSKATTSIL-----GGYARNGLPDKALSLFHRTLCEEELFLDEVSLTLILAVC 531

Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN 374
            +LGF E G Q+H +A K G   DV + ++L+  YSK     DA K+F+ ++ +D +  N
Sbjct: 532 GTLGFREMGYQIHCYALKAGYFSDVCLGNSLISMYSKCCDSDDAIKVFNTMQEHDVVSWN 591

Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           ++I+ Y                              L +NG+  EAL L+  MN+ +++ 
Sbjct: 592 SLISCYI-----------------------------LQRNGN--EALALWSRMNEEEIKP 620

Query: 435 DKFSLASVISA 445
           D  +L  VISA
Sbjct: 621 DMITLTLVISA 631



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 31/251 (12%)

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
           ALIS Y   G   +A  VF   +  + V + ++ISG+   N + EAL +F +MR+ G+++
Sbjct: 119 ALISTYLKLGFPREAFLVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGIVQ 178

Query: 303 -DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            +  T  ++L+AC  +     G Q+HG   K G ++ V V ++L+  YSK          
Sbjct: 179 PNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVGNSLMSLYSKDSG------- 231

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
                              SSC   +D   +F  +P++ + SWN++I  L + G   +A 
Sbjct: 232 -------------------SSC---DDVLKLFDEIPHRDVASWNTVISSLVKEGKSHKAF 269

Query: 422 DLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
           +LF  MN+++ L +D F+L++++S+C + S L  G ++  R   IGL  +  ++ +L+ F
Sbjct: 270 NLFYEMNRVEGLGVDCFTLSTLLSSCTDSSDLLRGRELHGRAIRIGLMQELSVNNALIGF 329

Query: 481 YCKCGFIKMDE 491
           Y K G +K  E
Sbjct: 330 YSKFGDMKKVE 340



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L  C T     +G Q+H + LK G   S + + N L+ MY +C +  DA+ +F+ M
Sbjct: 524 LTLILAVCGTLGFREMGYQIHCYALKAGYF-SDVCLGNSLISMYSKCCDSDDAIKVFNTM 582

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KND-FSWNMLISGF--AKAGELKT 121
              +  SWN++I  ++   +  ++L L++ M +   K D  +  ++IS F   ++ +L +
Sbjct: 583 QEHDVVSWNSLISCYILQRNGNEALALWSRMNEEEIKPDMITLTLVISAFRYTESNKLSS 642

Query: 122 ARTLFNDM 129
            R LF  M
Sbjct: 643 CRDLFLSM 650


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 210/462 (45%), Gaps = 81/462 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  +Q+C    SI VG+ +H   + +G  + T  +   LL MY + G   D+  +F+ +
Sbjct: 167 LSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTF-VNTSLLGMYAKLGRIGDSCKVFNSL 225

Query: 68  PRRNCFSWNAMIEGFM-----------------------------------KLGHKEKSL 92
             RN  SWNAMI GF+                                   +LG  EK  
Sbjct: 226 ENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGR 285

Query: 93  QL----FNVMPQKNDFSWNMLISGFAKAGELKTARTLF--NDMPRRNAIAWNSMIHCYVR 146
            +    F +  Q N      LI  FAK G +  + ++F  N       + WN+MI  +  
Sbjct: 286 YINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTI 345

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
           +G   EA+ LF  +  + ++R   D +   + + + AD+ +LEY KQ+H  I  +G    
Sbjct: 346 SGHGEEAMLLFLRMCQNNIKR---DVYTYCSTLNSIADMRSLEYVKQLHGMIWKSG---- 398

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
             +G SL N                           AL+  YA CG+++  R++FD   +
Sbjct: 399 -SIGVSLCN---------------------------ALMDAYAKCGELDAMRKLFDTWEE 430

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
           ++ + W ++++ Y  ++E  +AL +F +MR  G   +  T + VL++C+SL  LE+G+QV
Sbjct: 431 SNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQV 490

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
           H   CK G   D  V S L+D Y+K G   DA K+F  LK  D I    MI+ Y+  G  
Sbjct: 491 HSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMA 550

Query: 387 EDAKHIFRTM----PNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +DA  +FR M    PN +  ++  ++   S  G   E L  F
Sbjct: 551 KDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYF 592



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/521 (23%), Positives = 224/521 (42%), Gaps = 104/521 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIA-NRLLQMYMRCGNPTDALLLFDE 66
           L  L++       +   K +H   +K  ++  +L +  N+L+  Y +C +   A  +FDE
Sbjct: 64  LIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDE 123

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQK------------------- 101
           +P+++ FSW  ++ G  + G     +  F      +++P +                   
Sbjct: 124 IPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVG 183

Query: 102 --------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                           F    L+  +AK G +  +  +FN +  RN ++WN+MI  +V N
Sbjct: 184 EMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSN 243

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   EA   F  +   L E ++ +     +V  A   L  +E G+ I+      G+  + 
Sbjct: 244 GLYAEAYNSFLRM---LGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNI 300

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            +G++L++++ KCG    +               S  +S ++ CG               
Sbjct: 301 HVGTALIDMFAKCGCVTES--------------WSVFVSNFSGCG--------------- 331

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
            ++ WN+MISG+  +    EA+LLF +M +N +  D  T  S L++ + +  LE+ KQ+H
Sbjct: 332 VNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLH 391

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G   K G I  V + +AL+D Y+K G      KLF   +  + I   T++T YS     E
Sbjct: 392 GMIWKSGSI-GVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWE 450

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
           D                               AL +F  M ++  + ++ + + V+++CA
Sbjct: 451 D-------------------------------ALSVFSQMREMGFQPNQVTFSGVLASCA 479

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++ SLE G+QV +     G   D+ + + L+D Y KCG ++
Sbjct: 480 SLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVR 520



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 194/437 (44%), Gaps = 83/437 (18%)

Query: 54  CGNPTDALLLFDEMPRRNCFSWNAMIEGF-MKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           C + T  + L  E     C      I GF +K    EKSL +            N L+  
Sbjct: 58  CYSETSLIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVM----------LNQLVIA 107

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE-LNSDLVERLQCD 171
           ++K  +  +AR +F+++P+++  +W  ++     NGF R+ +  F E L  D+V     D
Sbjct: 108 YSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVP----D 163

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
            + L+  I AC  + ++  G+ +H+ ++  G    + + +SL+ +Y K G    + +V N
Sbjct: 164 EYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFN 223

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            ++  +    +A+I                               SG++SN    EA   
Sbjct: 224 SLENRNQVSWNAMI-------------------------------SGFVSNGLYAEAYNS 252

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F +M    +  + +   SV  A   LG +E G+ ++  A ++G+  ++ V +AL+D ++K
Sbjct: 253 FLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAK 312

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G  +++  +F              ++ +S CG           +P      WN+MI G 
Sbjct: 313 CGCVTESWSVF--------------VSNFSGCG---------VNLP------WNAMISGF 343

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV---TIIGLD 468
           + +G   EA+ LF  M + +++ D ++  S +++ A++ SLE  +Q+   +     IG+ 
Sbjct: 344 TISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVS 403

Query: 469 SDQIISTSLVDFYCKCG 485
               +  +L+D Y KCG
Sbjct: 404 ----LCNALMDAYAKCG 416



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 19/234 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L SC +  S+  G+Q+H    K G       + + L+ MY +CG+  DA+ +F+ +   
Sbjct: 474 VLASCASLCSLEYGQQVHSLTCKTGFARDKC-VESVLIDMYAKCGSVRDAIKVFESLKDP 532

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN----VMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SW AMI G+ + G  + +L+LF     V+P  N  ++  L+   +  G +      F
Sbjct: 533 DVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYF 592

Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
           + M  R  +      +  ++    R G   EA +   ++       ++ D  + +T++GA
Sbjct: 593 HLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMP------IEPDEKVWSTLLGA 646

Query: 182 CADLAALEYGKQIHSHIL-VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
           C     ++  K     +L  N  DF +++   L N Y + G+      V NMMK
Sbjct: 647 CRVHGNIQLAKIAAQKVLSYNPDDFAALV--LLSNTYREAGNIEGGLNVRNMMK 698


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 231/529 (43%), Gaps = 117/529 (22%)

Query: 2   DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP------IANRLLQMYMRCG 55
           ++ ++  A +L+ C    ++  G+QLH    K      T P      +A +L+ MY +CG
Sbjct: 77  NSPVEAFAYVLELCGKRRAVSQGRQLHSRIFK------TFPSFELDFLAGKLVFMYGKCG 130

Query: 56  NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------- 99
           +  DA  +FDEMP R  F+WN MI  ++  G    +L L+  M                 
Sbjct: 131 SLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLK 190

Query: 100 -----------------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRR-NAI 135
                                      F  N L+S +AK  +L  AR LF+    + +A+
Sbjct: 191 ACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAV 250

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            WNS++  Y  +G + E + LF+E++   +     +++ + + + AC   +  + GK+IH
Sbjct: 251 LWNSILSSYSTSGKSLETLELFREMH---MTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           +          SVL SS                        + +  +ALI+ Y  CGKM 
Sbjct: 308 A----------SVLKSS--------------------THSSELYVCNALIAMYTRCGKMP 337

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A R+  +  +   V WNS+I GY+ N    EAL  F  M   G   D  ++ S+++A  
Sbjct: 338 QAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASG 397

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L  L  G ++H +  K G   ++ V + L+D YSK       C L              
Sbjct: 398 RLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK-------CNL-------------- 436

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
             T Y   GR       F  M +K LISW ++I G +QN   +EAL+LF ++ K  + +D
Sbjct: 437 --TCY--MGR------AFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 486

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           +  L S++ A + + S+ + +++   +   GL  D +I   LVD Y KC
Sbjct: 487 EMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKC 534



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/516 (23%), Positives = 221/516 (42%), Gaps = 108/516 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL++C     I  G +LH   +K G  +ST  I N L+ MY +  + + A  LFD    +
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLG-YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK 246

Query: 71  -NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW------------------- 106
            +   WN+++  +   G   ++L+LF  M    P  N ++                    
Sbjct: 247 GDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEI 306

Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                            N LI+ + + G++  A  +   M   + + WNS+I  YV+N  
Sbjct: 307 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 366

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
            +EA+  F ++   +    + D   + ++I A   L+ L  G ++H++++ +G D +  +
Sbjct: 367 YKEALEFFSDM---IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 423

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
           G++L+++Y KC                        ++ Y          R F R  D   
Sbjct: 424 GNTLIDMYSKCN-----------------------LTCYMG--------RAFLRMHDKDL 452

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           + W ++I+GY  N+   EAL LF  + +  +  D   L S+L A S L  +   K++H H
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             + G++D                                T++ N ++ VY  C  +  A
Sbjct: 513 ILRKGLLD--------------------------------TVIQNELVDVYGKCRNMGYA 540

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
             +F ++  K ++SW SMI   + NG+  EA++LF  M +  L  D  +L  ++SA A++
Sbjct: 541 TRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASL 600

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           S+L  G ++   +   G   +  I+ ++VD Y  CG
Sbjct: 601 SALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCG 636



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 207/483 (42%), Gaps = 105/483 (21%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+      +GK++H   LK    +S L + N L+ MY RCG    A  +  +M   +
Sbjct: 291 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 350

Query: 72  CFSWNAMIEGFMK----------------LGHKEKSLQLFNVMPQKNDFS---------- 105
             +WN++I+G+++                 GHK   + + +++      S          
Sbjct: 351 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHA 410

Query: 106 ------W-------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                 W       N LI  ++K          F  M  ++ I+W ++I  Y +N    E
Sbjct: 411 YVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVE 470

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF+++     +R++ D  IL +++ A + L ++   K+IH HIL  GL  D+V+ + 
Sbjct: 471 ALELFRDVAK---KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNE 526

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           LV++YGKC +                        GYA         RVF+       V W
Sbjct: 527 LVDVYGKCRNM-----------------------GYAT--------RVFESIKGKDVVSW 555

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
            SMIS    N  ++EA+ LF +M   G+  D+  L  +LSA +SL  L  G+++H +  +
Sbjct: 556 TSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLR 615

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
            G   +  +A A++D Y        AC                       CG ++ AK +
Sbjct: 616 KGFCLEGSIAVAVVDMY--------AC-----------------------CGDLQSAKAV 644

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F  +  K L+ + SMI     +G    A++LF  M   ++  D  S  +++ AC++   L
Sbjct: 645 FDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLL 704

Query: 453 ELG 455
           + G
Sbjct: 705 DEG 707



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 65/325 (20%)

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMM 233
            A V+  C    A+  G+Q+HS I      F+   L   LV +YGK              
Sbjct: 83  FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGK-------------- 128

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                            CG ++DA +VFD   D ++  WN+MI  Y+SN E   AL L+ 
Sbjct: 129 -----------------CGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYW 171

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            MR  GV    S+  ++L AC+ L  +  G ++H    K+G      + +AL+  Y+K  
Sbjct: 172 NMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKND 231

Query: 354 MPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
             S A +LF   +   D +L N++++ YS+ G+                           
Sbjct: 232 DLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK--------------------------- 264

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
                +E L+LF  M+      + +++ S ++AC   S  +LG+++ A V      S ++
Sbjct: 265 ----SLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 473 -ISTSLVDFYCKCGFIKMDEYYLMQ 496
            +  +L+  Y +CG +   E  L Q
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQ 345



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 136/339 (40%), Gaps = 73/339 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           G +LH + +K G  +S L + N L+ MY +C         F  M  ++  SW  +I G+ 
Sbjct: 405 GMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463

Query: 84  KLGHKEKSLQLFNVMPQK--------------------------------------NDFS 105
           +     ++L+LF  + +K                                      +   
Sbjct: 464 QNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVI 523

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N L+  + K   +  A  +F  +  ++ ++W SMI     NG   EAV LF+ +   + 
Sbjct: 524 QNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM---VE 580

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             L  D+  L  ++ A A L+AL  G++IH ++L  G   +  +  ++V++Y        
Sbjct: 581 TGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMY-------- 632

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                  A CG +  A+ VFDR      + + SMI+ Y  +   
Sbjct: 633 -----------------------ACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCG 669

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
             A+ LF KMR   V  D  +  ++L ACS  G L+ G+
Sbjct: 670 KAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGR 708



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 48/282 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L++ +   S+ + K++H H L+KG+L++   I N L+ +Y +C N   A  +F+ +
Sbjct: 490 LGSILRASSVLKSMLIVKEIHCHILRKGLLDTV--IQNELVDVYGKCRNMGYATRVFESI 547

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------------- 102
             ++  SW +MI      G++ ++++LF  M +                           
Sbjct: 548 KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGR 607

Query: 103 DFSWNMLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
           +    +L  GF              A  G+L++A+ +F+ + R+  + + SMI+ Y  +G
Sbjct: 608 EIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHG 667

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             + AV LF ++     E +  D      ++ AC+    L+ G+     I+ +  + +  
Sbjct: 668 CGKAAVELFDKMRH---ENVSPDHISFLALLYACSHAGLLDEGRGFLK-IMEHEYELEPW 723

Query: 209 LGS--SLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 247
                 LV++ G+      A + + MMK EP      AL++ 
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAA 765


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 143/596 (23%), Positives = 243/596 (40%), Gaps = 152/596 (25%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP--IANRLLQMYMRCGNPTDALLL 63
           D+   +L       ++  G+QLH H +  G L       +A +LL MY +CG   DA  L
Sbjct: 56  DHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRL 115

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP------------------------ 99
           FD MP R  FSWNA+I   +  G   +++ ++  M                         
Sbjct: 116 FDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGA 175

Query: 100 -------------------QKNDFSWNMLISGFAKAGELKTARTLFNDM-PRRNAIAWNS 139
                               ++    N L+  +AK G L +A  +F  M   R+  +WNS
Sbjct: 176 EGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNS 235

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
            I   V+NG   EA+ LF+ + SD       +++    V+  CA+LA L +G+++H+ +L
Sbjct: 236 AISGCVQNGMFLEALDLFRRMQSD---GFSMNSYTTVGVLQVCAELAQLNHGRELHAALL 292

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE------------------------ 235
             G +F+ +  ++L+ +Y +CG  +SA +V   + +                        
Sbjct: 293 KCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAID 351

Query: 236 -----------PDDFCLSALISGYANCGKMNDAR-------------------------- 258
                      PD  C+ +L+S   + G++ + R                          
Sbjct: 352 FFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYI 411

Query: 259 ---------RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
                    RVFDR      V W ++I+ Y  ++  +EA+  F   ++ G+  D   + S
Sbjct: 412 KCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGS 471

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L ACS L  +   KQVH +A + G++D                                
Sbjct: 472 ILEACSGLKSISLLKQVHSYAIRNGLLD-------------------------------- 499

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            IL N +I +Y  CG +  A +IF  +  K +++W SM+   ++NG   EA+ LF  M  
Sbjct: 500 LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLN 559

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             ++ D  +L  ++ A A +SSL  G+++   +       +  + +SLVD Y  CG
Sbjct: 560 AGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCG 615



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 158/374 (42%), Gaps = 69/374 (18%)

Query: 121 TARTLFNDMPRRN--AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           TA   F+  PRR     +  + +    ++G  REA+R     ++        D +    V
Sbjct: 4   TAALPFHPTPRRKLPPASAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHY--GWV 61

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           +   A   A+  G+Q+H+H +  G   D   G                            
Sbjct: 62  LDLVAVRRAVSEGRQLHAHAVATGALGDDDAG---------------------------- 93

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
           F  + L+  Y  CG++ DA R+FD     +   WN++I   +S+    EA+ ++  MR +
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 299 ----GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
               G   D  TLASVL AC + G    G +VHG A K G+    +VA+AL+  Y+K   
Sbjct: 154 EPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAK--- 210

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ 413
                                       CG ++ A  +F  M + + + SWNS I G  Q
Sbjct: 211 ----------------------------CGLLDSALRVFEWMRDGRDVASWNSAISGCVQ 242

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG  +EALDLF  M      M+ ++   V+  CA ++ L  G ++ A +   G + + I 
Sbjct: 243 NGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQ 301

Query: 474 STSLVDFYCKCGFI 487
             +L+  Y +CG++
Sbjct: 302 CNALLVMYARCGWV 315



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 75/340 (22%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE--- 80
           G+++H + +K+  L+S L IAN L+ MY++C +   +  +FD M  ++  SW  +I    
Sbjct: 384 GREVHAYAVKQR-LDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYA 442

Query: 81  ---------GFMKLGHKE----------------KSLQLFNVMPQKNDFSW--------- 106
                    G  +   KE                  L+  +++ Q + ++          
Sbjct: 443 QSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLIL 502

Query: 107 -NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF-KELNSDL 164
            N +I  + + GE+  A  +F  + +++ + W SM++C+  NG   EAV LF K LN+ +
Sbjct: 503 KNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGI 562

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
               Q D+  L  ++GA A L++L  GK+IH  ++      +  + SSLV++Y       
Sbjct: 563 ----QPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMY------- 611

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                   + CG MN A +VFD       V+W +MI+    +  
Sbjct: 612 ------------------------SGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGH 647

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
             +A+ +F +M   GV  D  +  ++L ACS    ++ GK
Sbjct: 648 GKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGK 687



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 12/213 (5%)

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
           T A L FH   R   L  AS  AS+   C      E  +Q+   + +            +
Sbjct: 3   TTAALPFHPTPRRK-LPPASAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWV 61

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTI-------LLNTMITVYSSCGRIEDAKHIFRTMPN 398
           LD  + R   S+  +L +       +       L   ++ +Y  CGR+ DA  +F  MP 
Sbjct: 62  LDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPA 121

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD----LRMDKFSLASVISACANISSLEL 454
           +++ SWN++I     +G   EA+ ++  M   +       D  +LASV+ AC        
Sbjct: 122 RTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRC 181

Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           G +V       GLD   +++ +LV  Y KCG +
Sbjct: 182 GSEVHGLAVKSGLDRSTLVANALVGMYAKCGLL 214


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 212/475 (44%), Gaps = 92/475 (19%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y+R      A  LFD+MP R+ FSWN M+ G+++      + +LF++MP+K+  
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD- 163
           SWN L+SG+A+ G +  AR +F++MP +N+I+WN ++  YV NG   EA  LF E  SD 
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF-ESKSDW 202

Query: 164 -----------------------LVERLQC-DAFILATVIGACADLAALEYGKQIHSHIL 199
                                  L +++   DA    T+I   A    L   +++     
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN---- 255
                 D    +++V+ Y + G  + A    + M E ++   +A+I+GY    KM+    
Sbjct: 263 TR----DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 256 ---------------------------DARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                                       AR+ FD       V W ++I+GY  +    EA
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L +F +++++G   + +T    LS C+ +  LE GKQ+HG A K+G      V +ALL  
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y K G   +A   F  ++  D +  NTM+  Y        A+H F               
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGY--------ARHGFGR------------- 477

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
                     +AL +F +M    ++ D+ ++  V+SAC++   L+ G + F  +T
Sbjct: 478 ----------QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 200/417 (47%), Gaps = 19/417 (4%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +   WN  I   M+ GH + +L +FN MP+++  S+N +ISG+ +  +   AR LF+ MP
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            R+  +WN M+  YVRN    +A RLF     DL+   + D     +++   A    ++ 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLF-----DLMP--EKDVVSWNSLLSGYAQNGYVDE 160

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            +++      N  + +S+  + L+  Y   G    A  +     + D    + L+ G+  
Sbjct: 161 AREVFD----NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVR 216

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
             K+ DAR +FD+     ++ WN+MISGY      ++A  LF +        D  T  ++
Sbjct: 217 KKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE----SPTRDVFTWTAM 272

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           +S     G L+  K       +     + +  +A++  Y +      A +LF  +   + 
Sbjct: 273 VSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNI 328

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
              NTMIT Y   G I  A+  F  MP +  +SW ++I G +Q+G   EAL++F  + + 
Sbjct: 329 SSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD 388

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
              +++ +    +S CA+I++LELG+Q+  +   +G  +   +  +L+  Y KCG I
Sbjct: 389 GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 169/367 (46%), Gaps = 73/367 (19%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           ++  Y++ G   +A   FDEMP +N  S+NAMI G+++    + + +LF  MP +N  SW
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW 331

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N +I+G+ + G++  AR  F+ MP+R+ ++W ++I  Y ++G   EA+ +F E+  D  E
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD-GE 390

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            L    F  A  +  CAD+AALE GKQIH   +  G      +G++L+ +Y K       
Sbjct: 391 SLNRATFGCA--LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK------- 441

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                   CG +++A   F+   +   V WN+M++GY  +    
Sbjct: 442 ------------------------CGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGR 477

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           +AL +F  M+  GV  D  T+  VLSACS  G L+ G +                     
Sbjct: 478 QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEY-------------------- 517

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNT----MITVYSSCGRIEDAKHIFRTMP-NKSL 401
                          +S  K Y  I  +     MI +    GR+E+A+ + R MP     
Sbjct: 518 --------------FYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563

Query: 402 ISWNSMI 408
            SW +++
Sbjct: 564 ASWGALL 570



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 12/256 (4%)

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
           D D +  +  ++ + + G  +SA  V N M        +A+ISGY    K N AR +FD+
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
             +     WN M++GY+ N    +A  LF  M      +D  +  S+LS  +  G+++  
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEA 161

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           ++V  +  +     + I  + LL  Y   G   +AC LF     +D I  N ++  +   
Sbjct: 162 REVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK 217

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
            ++ DA+ +F  MP +  ISWN+MI G +Q G   +A  LF      D+    F+  +++
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMV 273

Query: 444 SACANISSLELGEQVF 459
           S       L+  +  F
Sbjct: 274 SGYVQNGMLDEAKTFF 289



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G       + N LL MY +CG+  +A   F+ +  ++
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCF-VGNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
             SWN M+ G+ + G   ++L +F  M     + ++ +   ++S  +  G L      F 
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519

Query: 128 DMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +   S     MI    R G   EA  L + +        Q  A     ++GA 
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP------FQPGAASWGALLGAS 573

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
                 E G++  + ++      +S +   L NLY   G +  A+++ + M++
Sbjct: 574 RIHGNTELGEKA-AEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRD 625


>gi|449442080|ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18520-like [Cucumis sativus]
 gi|449490224|ref|XP_004158542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18520-like [Cucumis sativus]
          Length = 619

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 215/495 (43%), Gaps = 103/495 (20%)

Query: 31  FLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEK 90
           F+ +   +  + + N LL  Y+R G   DA  +FDEMP R+  +W A+I G++ L   E+
Sbjct: 112 FILRNFTSFGIYVGNNLLSSYLRLGMLVDARKVFDEMPMRSVVTWTAIINGYIDLDLTEE 171

Query: 91  SLQLF-------------------NVMPQKNDFSWNMLISG------------------- 112
           +L LF                   N+  ++ DF     I G                   
Sbjct: 172 ALALFSDSVKSGVLANGQMFVCILNLCAKRLDFELGRQIHGVIVKGNRGNLIVDSAIIYF 231

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +A+  ++ +A   F  M RR+ + W SMI    + G  REA+ +F  + SD       + 
Sbjct: 232 YAQCKDISSAFVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFSNMLSD---EFLPNE 288

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           F + +V+ AC +   L+ G+Q+H  I+   +  D  +G+SLV++Y K             
Sbjct: 289 FSVCSVLKACGEERELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAK------------- 335

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                             CG + D+R VFD   + ++V W S+I+GY       EAL LF
Sbjct: 336 ------------------CGNLADSREVFDGMRNRNTVTWTSIIAGYAREGLGEEALNLF 377

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             M+R  +  +  T+ S+L AC S+     G++VH    K     ++ + S L+  Y   
Sbjct: 378 RLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTLVWFY--- 434

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                 CK  ++LK                      A  + + MP + ++SW ++I G +
Sbjct: 435 ------CKCRNQLK----------------------ASMVLQLMPLRDVVSWTAIISGCA 466

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
             G   EAL+   NM +  +  + F+ +S + ACA + ++  G+ + +        S+  
Sbjct: 467 HLGHESEALEFLKNMIEEGVEPNSFTYSSTLKACAKMEAVLQGKMIHSSANKTSALSNVF 526

Query: 473 ISTSLVDFYCKCGFI 487
           + ++L+  Y KCG++
Sbjct: 527 VGSALIYMYAKCGYV 541



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 203/487 (41%), Gaps = 111/487 (22%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C       +G+Q+H   +K    N  L + + ++  Y +C + + A + F+ M RR
Sbjct: 194 ILNLCAKRLDFELGRQIHGVIVKGNRGN--LIVDSAIIYFYAQCKDISSAFVAFERMRRR 251

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ------------------------ 100
           +   W +MI    + G   +++ +F+ M      P                         
Sbjct: 252 DVVCWTSMITSCSQQGLGREAISMFSNMLSDEFLPNEFSVCSVLKACGEERELKIGRQLH 311

Query: 101 --------KND-FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                   KND F    L+  +AK G L  +R +F+ M  RN + W S+I  Y R G   
Sbjct: 312 GLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAGYAREGLGE 371

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ LF+ +     +R+  +   + +++ AC  + A   G+++H+ I+ N    +  +GS
Sbjct: 372 EALNLFRLMKR---QRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGS 428

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV  Y KC +   A+ VL +M   D                                V 
Sbjct: 429 TLVWFYCKCRNQLKASMVLQLMPLRD-------------------------------VVS 457

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W ++ISG      ++EAL     M   GV  ++ T +S L AC+ +  +  GK +H  A 
Sbjct: 458 WTAIISGCAHLGHESEALEFLKNMIEEGVEPNSFTYSSTLKACAKMEAVLQGKMIHSSAN 517

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K   + +V V SAL+  Y+K G  ++A ++F                             
Sbjct: 518 KTSALSNVFVGSALIYMYAKCGYVTEASQVFD---------------------------- 549

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI-- 449
              +MP ++L+SW +MI+  ++NG   EAL L   M      +D + L +V  AC ++  
Sbjct: 550 ---SMPVRNLVSWKAMILCYARNGLCREALKLMYRMQAEGFEVDDYILGTVYGACGDVKC 606

Query: 450 ---SSLE 453
              SSLE
Sbjct: 607 DVDSSLE 613


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 174/361 (48%), Gaps = 38/361 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ N ++  +  LG    + +LF  +P++N  SWN+L  G+ K G+L  AR LF++MP R
Sbjct: 139 FTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPER 198

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N   WN+M+      GF  E++  F ++     E +  D F L +V   CA L  +  G+
Sbjct: 199 NVATWNAMVAGLTNLGFDEESLGFFLDMRR---EGMHPDEFGLGSVFRCCAGLRDVVTGR 255

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H++++ +GLD D  +GSSL ++Y +CG       VL M+                   
Sbjct: 256 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS----------------- 298

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                          S V  N++I+G   N +   AL  F  MR  GV  D  T  S +S
Sbjct: 299 --------------LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAIS 344

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +CS L  L  G+Q+HG   K GV   V V + L+  YS+ G   D+ ++F      DT L
Sbjct: 345 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 404

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           L+ MI+ Y   G  + A  +F+ M N     S +++ +++   S +G   E +D F  M 
Sbjct: 405 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 464

Query: 429 K 429
           K
Sbjct: 465 K 465



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 34/314 (10%)

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           A + + +  AC  L  L   +Q+H+    +G   D    + L+  Y   GD  +A ++  
Sbjct: 106 ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 162

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            +   +    + L  GY   G +  AR++FD   + +   WN+M++G  +   D E+L  
Sbjct: 163 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 222

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  MRR G+  D   L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +
Sbjct: 223 FLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR 282

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +++ + + R +P+ S++S N++I G 
Sbjct: 283 -------------------------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGR 311

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +QNG    AL+ FC M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D   
Sbjct: 312 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVV 371

Query: 472 IISTSLVDFYCKCG 485
            + T LV  Y +CG
Sbjct: 372 PVMTCLVHMYSRCG 385



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 298 NGVL-EDASTLAS-VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            GVL  DA+ L S +  AC +L  L   +Q+H  A   G   D   A+ L+  Y+  G  
Sbjct: 98  RGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDL 154

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           + A +LF  +   + +  N +   Y   G +  A+ +F  MP +++ +WN+M+ GL+  G
Sbjct: 155 TAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLG 214

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              E+L  F +M +  +  D+F L SV   CA +  +  G QV A V   GLD D  + +
Sbjct: 215 FDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGS 274

Query: 476 SLVDFYCKCGFIKMDEYYL 494
           SL   Y +CG ++  E  L
Sbjct: 275 SLAHMYMRCGCLQEGEAVL 293



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 343 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 401

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFN 127
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+   + +G  +     F 
Sbjct: 402 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 461

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +      +  ++    R+G   EA  L   +       L  D  I  T++ AC
Sbjct: 462 LMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMP------LTPDGVIWKTLLSAC 515

Query: 183 ADLAALEYGKQIHSHIL-VNGLDFDS-VLGSSLVNLYGKCGDFNSANQVL---NMMKEP 236
                 +  ++I   ++ ++  D  S VL S++     + GD +   + +   N+ KEP
Sbjct: 516 KTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEP 574



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 127/324 (39%), Gaps = 59/324 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + + C     +  G+Q+H + ++ G L+  + + + L  MYMRCG   +   +   +
Sbjct: 238 LGSVFRCCAGLRDVVTGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGCLQEGEAVLRML 296

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P  +  S N +I G  + G  E +L+ F +M       +  ++   IS  +    L   +
Sbjct: 297 PSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQ 356

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +   + +    +       ++H Y R G   ++ R+F             D F+L+ +I
Sbjct: 357 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-------FGYCGSDTFLLSAMI 409

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            A        YG   H H            G   + L+          Q++N   EP D 
Sbjct: 410 SA--------YG--FHGH------------GQKAIELF---------KQMMNGGAEPSDV 438

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNN---EDTEALLLF 292
              AL+   ++ G   +    F+  T T     SV   + +   +  +   ++ EAL+L 
Sbjct: 439 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 498

Query: 293 HKMRRNGVLEDASTLASVLSACSS 316
             +  +GV+       ++LSAC +
Sbjct: 499 MPLTPDGVI-----WKTLLSACKT 517


>gi|302753930|ref|XP_002960389.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
 gi|300171328|gb|EFJ37928.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
          Length = 577

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 205/446 (45%), Gaps = 58/446 (13%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS 105
           +L +Y   G P DA  LFD +P  R+  +W+ +I  F+K+G  E + ++F+++P+    +
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIPGGRDSVAWSCLIGAFVKIGDLEHARRVFDLLPRWTVVT 60

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
              ++   AK G+ + AR +F  MP R+ +AWN+MI  Y +NG  + A  +F        
Sbjct: 61  STAILVALAKRGKAENARAMFLAMPERDLVAWNAMITAYAQNGNLQVAQAMFF------- 113

Query: 166 ERLQCDAFI-LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
            R+    F+    +I  CA        K++   +       + V  +++V  Y + G   
Sbjct: 114 -RMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMPQR----EVVSWTAMVATYSQSGRLE 168

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A  +L+ M   +    + +I  +A+   + +A+  FDR  +   V WN++I+ Y   ++
Sbjct: 169 EAQALLSKMPALNIVSWNVMIQAFADNLLVEEAKERFDRAPEHDFVSWNAIITAYAQTSQ 228

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              A   F +M +                                        DV+  + 
Sbjct: 229 IFLARAAFDRMPQR---------------------------------------DVVSWAT 249

Query: 345 LLDTYSKRGMPS--DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP---NK 399
           ++ +Y++ G PS   A ++F      + +  N MIT YS+ GRI+ ++ +F  MP     
Sbjct: 250 MIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGLFERMPMMAEH 309

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            L+SWN++I G   NG    AL LF  M++     D  S  S ++ACA ++SL     + 
Sbjct: 310 DLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYTSALAACAGLASLGAARDIH 369

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCG 485
            R+   GL++D  +  +LVDFY K G
Sbjct: 370 WRLCKAGLETDAFVHNALVDFYGKSG 395



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 199/422 (47%), Gaps = 49/422 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N ++  Y + GN   A  +F  MP RN  SWNA+I+G  +   +  + ++F+ MPQ+   
Sbjct: 93  NAMITAYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMPQREVV 152

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF-KELNSD 163
           SW  +++ ++++G L+ A+ L + MP  N ++WN MI  +  N    EA   F +    D
Sbjct: 153 SWTAMVATYSQSGRLEEAQALLSKMPALNIVSWNVMIQAFADNLLVEEAKERFDRAPEHD 212

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD- 222
            V     +A I A    +   LA   + +             D V  ++++  Y + G  
Sbjct: 213 FVS---WNAIITAYAQTSQIFLARAAFDRMPQR---------DVVSWATMIQSYAQEGQP 260

Query: 223 -FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT---TDTSSVMWNSMISG 278
             + A ++ +   + +    + +I+GY+  G++  +R +F+R     +   V WN++I+G
Sbjct: 261 SMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGLFERMPMMAEHDLVSWNALIAG 320

Query: 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338
           ++ N  D  AL LF +M R G   D ++  S L+AC+ L  L   + +H   CK G+  D
Sbjct: 321 HLDNGLDERALQLFLEMDRRGCSPDPASYTSALAACAGLASLGAARDIHWRLCKAGLETD 380

Query: 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
             V +AL+D Y K G  +DA     EL                          +F+++ +
Sbjct: 381 AFVHNALVDFYGKSGRMADA-----EL--------------------------VFQSLAS 409

Query: 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458
             +++WN++  GLS+ GS    +DL   +    L  D  +  ++++A  +   ++ G + 
Sbjct: 410 VDVVTWNALAAGLSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRA 469

Query: 459 FA 460
           FA
Sbjct: 470 FA 471



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 160/370 (43%), Gaps = 58/370 (15%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK--EKSLQLFNVMPQKN 102
           N ++  Y +      A   FD MP+R+  SW  MI+ + + G    +++ ++F+  PQ+N
Sbjct: 217 NAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRN 276

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMP---RRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
             SWN++I+G++ +G +K +R LF  MP     + ++WN++I  ++ NG    A++LF E
Sbjct: 277 VVSWNVMITGYSASGRIKQSRGLFERMPMMAEHDLVSWNALIAGHLDNGLDERALQLFLE 336

Query: 160 LNSDLVERLQC--DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
           ++     R  C  D     + + ACA LA+L   + IH  +   GL+ D+ + ++LV+ Y
Sbjct: 337 MD-----RRGCSPDPASYTSALAACAGLASLGAARDIHWRLCKAGLETDAFVHNALVDFY 391

Query: 218 GKCGDFNSANQVLNMMK-----------------------------------EPDDFCLS 242
           GK G    A  V   +                                    EPD     
Sbjct: 392 GKSGRMADAELVFQSLASVDVVTWNALAAGLSRQGSYRLVVDLLWAIKDQGLEPDGITFL 451

Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSV-----MWNSMISGYISNNEDTEALLLFHKMRR 297
           AL++ Y + G ++  RR F    +T  +      ++ ++      N   EA+ +   M  
Sbjct: 452 ALLAAYGHAGLVDHGRRAFAAMVETYRIEPGIEHYHCLVDMLGRANRLEEAVAVVSAMPH 511

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL-DTYSKRGMPS 356
                 + T  +VLSAC     L  G         +G+  D   A  L+ + Y   GM  
Sbjct: 512 R---PSSVTWTTVLSACVKWKNL--GVASVAFESLLGIDPDGPAAYVLMANVYGSAGMAE 566

Query: 357 DACKLFSELK 366
           +  KL   ++
Sbjct: 567 EEAKLLEHVR 576


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 200/387 (51%), Gaps = 11/387 (2%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           +D + N L+  ++K G +  A  LF++ P  N+  W ++IH +  N     A   F +++
Sbjct: 35  SDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMH 94

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
            + +  L    F +A+V+ A + L  ++ G  ++   +  G +FD V+ + ++ L+ +CG
Sbjct: 95  RENIVPLN---FTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCG 151

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
           +  SA Q+ + M+E D    +++I+GY N G+++ AR++FDR  + + + W SMI GY+ 
Sbjct: 152 EMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVK 211

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
             +  EA +LF +M      +D ++   ++SA  S+G L   + +     ++  I DV  
Sbjct: 212 AGDLLEARVLFERMPE----KDLASWKVMVSAYMSVGNLVAARNLF----ELMPIHDVGT 263

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            + ++    K G    A + F  ++  +      +I  Y   G ++ A+ +F  MP K+L
Sbjct: 264 WNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNL 323

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ++W++MI G ++ G P  +L L+    +  ++ D+     +ISAC+ +   +  E V   
Sbjct: 324 VAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICD 383

Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIK 488
                L  +  + TSL+D Y KCG I+
Sbjct: 384 FVGPSLFPNLQVVTSLIDMYAKCGNIE 410



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 196/446 (43%), Gaps = 74/446 (16%)

Query: 41  LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
           L + N +++++MRCG    A  +FDEM  R+  SWN+MI G+   G  + + +LF+ M +
Sbjct: 137 LVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEE 196

Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
           +N  SW  +I G+ KAG+L  AR LF  MP ++  +W  M+  Y+  G    A  LF+ +
Sbjct: 197 RNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELM 256

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
                     D      +I  C                                    K 
Sbjct: 257 PIH-------DVGTWNLMISGCC-----------------------------------KA 274

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G+ ++A +  + M+E +      +I GY   G ++ AR VFD+  + + V W++MI GY 
Sbjct: 275 GEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYA 334

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
                  +L L+   +  G+  D +    ++SACS LG  +  +          VI D +
Sbjct: 335 KTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAES---------VICDFV 385

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
             S                 LF  L+V     + ++I +Y+ CG IE A  +F  +  K 
Sbjct: 386 GPS-----------------LFPNLQV-----VTSLIDMYAKCGNIERAVQVFEMVDQKD 423

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
           L  ++++I   + +G   +A+ LF  M K +++ D  +   V++AC +   +  G ++F 
Sbjct: 424 LHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFR 483

Query: 461 R-VTIIGLDSDQIISTSLVDFYCKCG 485
           + +   G+   +     +VD   + G
Sbjct: 484 QMIDEYGIQPSEKHYACMVDILGRAG 509


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 218/449 (48%), Gaps = 42/449 (9%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEM----PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP- 99
           N L++ Y   G   +A+LL+  M       N +++  ++ G  K+    + +Q+   +  
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 100 ---QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL 156
              +++ F  N LI  +A+ G +     +F  M  RN ++W S+I  Y R    +EAV L
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216
           F E+   +   ++  +  +  VI ACA L  L+ G+++ ++I   GL  + V+ ++LV++
Sbjct: 220 FFEM---VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDM 276

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
           Y KC                               G ++ A+R+FD   D + V++N+++
Sbjct: 277 YMKC-------------------------------GAIDAAKRLFDECVDRNLVLYNTIL 305

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
           S Y       EAL +  +M + G   D  T+ S +SA + L  L +GK  HG+  + G+ 
Sbjct: 306 SNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLE 365

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
               + + ++D Y K G P  AC++F  +     +  N++   +   G +E A  +F  +
Sbjct: 366 GWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQI 425

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
           P ++ + WN+MI GL Q     +A++LF  M    ++ D+ ++  + SAC  + + EL +
Sbjct: 426 PERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAK 485

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            V   +   G+  D  ++T+LVD + +CG
Sbjct: 486 WVHTYIEKNGIPCDMRLNTALVDMFARCG 514



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/517 (23%), Positives = 226/517 (43%), Gaps = 74/517 (14%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C    +   G Q+H   +K G L   + I N L+  Y  CG+      +F+ M  R
Sbjct: 137 VLSGCTKIAAFCEGIQVHGSVVKMG-LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----------------------------- 101
           N  SW ++I G+ +    ++++ LF  M +                              
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVC 255

Query: 102 ----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     N    N L+  + K G +  A+ LF++   RN + +N+++  Y R G AR
Sbjct: 256 AYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAR 315

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+ +  E+   L +  + D   + + I A A L  L YGK  H +++ NGL+    +G+
Sbjct: 316 EALAILDEM---LQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGN 372

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
            ++++Y KCG    A +V ++M        ++L +G+   G +  A  VF++  + ++V 
Sbjct: 373 VIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVF 432

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MISG +  +   +A+ LF +M+  G+  D  T+  + SAC  LG  E  K VH +  
Sbjct: 433 WNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIE 492

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K G+  D+ + +AL+D +++                               CG  + A  
Sbjct: 493 KNGIPCDMRLNTALVDMFAR-------------------------------CGDPQSAMQ 521

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  M  + + +W + I  ++  G+   A  LF  M    ++ D      V++AC++   
Sbjct: 522 VFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQ 581

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           +E G  +F+ +   G+         +VD   + G ++
Sbjct: 582 VEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLR 618



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 156/376 (41%), Gaps = 77/376 (20%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           N +I+ +MK G  E + ++F++M  K   SWN L +GF + G++++A  +FN +P RNA+
Sbjct: 372 NVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAV 431

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
            WN+MI   V+     +A+ LF+E+     E ++ D   +  +  AC  L A E  K +H
Sbjct: 432 FWNTMISGLVQKSLFEDAIELFREMQG---EGIKADRVTMMGIASACGYLGAPELAKWVH 488

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
           ++I  NG+  D  L ++LV++                               +A CG   
Sbjct: 489 TYIEKNGIPCDMRLNTALVDM-------------------------------FARCGDPQ 517

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A +VF++ T+     W + I           A  LF++M   GV  D      VL+ACS
Sbjct: 518 SAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACS 577

Query: 316 SLGFLEHG-------------KQVHGHACKVGVIDDVIVASALLDTYSKRGM-PSD---- 357
             G +E G              Q+  + C V ++    +     D      M P+D    
Sbjct: 578 HGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWG 637

Query: 358 ----ACKLFS--ELKVYDTILLNTMIT-----------VYSSCGRIEDAKHI-------- 392
               AC++    E+  Y    +N +             +Y+S G+  D   +        
Sbjct: 638 SLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKG 697

Query: 393 FRTMPNKSLISWNSMI 408
            R +P  S +  N +I
Sbjct: 698 VRKVPGSSSVQVNGVI 713


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 149/563 (26%), Positives = 247/563 (43%), Gaps = 117/563 (20%)

Query: 6   DYLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           D    LLQ C    ++ +G+Q+H   LK G  +     I  +L+  Y +C     A  LF
Sbjct: 79  DVYGELLQGCVYERALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLF 138

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS------------G 112
            ++  +N FSW A++    ++G  +++L  F  M +      N +I             G
Sbjct: 139 GKLQVQNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIG 198

Query: 113 FAKA---------------------------GELKTARTLFNDMPRRNAIAWNSMIHCYV 145
           F K+                           G  + A+ +F+ +  +N +AWNSMI  + 
Sbjct: 199 FGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFT 258

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           +NG   EAV  F E+    VE +      L++ + A A+L+ ++ GKQ H+  +++GL+ 
Sbjct: 259 QNGLNAEAVETFYEMR---VEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLEL 315

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
            ++LGSSL+N Y K                                G + DA  VF    
Sbjct: 316 TNILGSSLINFYSKV-------------------------------GLVEDAELVFSEML 344

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
           +  +V WN ++SGY+ N     AL L H M+   +  D+ TLAS+++A +    L+ GK+
Sbjct: 345 EKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNLKLGKE 404

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG- 384
            H    +  +  DV VAS+++D Y+K      A ++F      D I+ NT++  Y+  G 
Sbjct: 405 GHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAYAEQGH 464

Query: 385 ----------------------------------RIEDAKHIFRTM------PNKSLISW 404
                                             +++ AK  F  M      PN  LI+W
Sbjct: 465 SGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPN--LITW 522

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            ++I GL+QNG   EA   F +M +  ++ +  S++S++SAC+ ++SL  G  +   +T 
Sbjct: 523 TTLICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITR 582

Query: 465 IGLDSDQIISTSLVDFYCKCGFI 487
             L     +  SLV+ Y KCG I
Sbjct: 583 HELSVSTPVLCSLVNMYAKCGSI 605



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 127/517 (24%), Positives = 228/517 (44%), Gaps = 113/517 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           I  GK +H + +K G L   + +A  LL MY +CG   +A  +FD++  +N  +WN+MI 
Sbjct: 197 IGFGKSVHAYVVKMG-LGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIV 255

Query: 81  GFMKLGHKEKSLQLF------NVMPQKNDFS----------------------------- 105
            F + G   ++++ F       V P +   S                             
Sbjct: 256 NFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLEL 315

Query: 106 ----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                + LI+ ++K G ++ A  +F++M  ++ + WN ++  YV NG    A+ L   + 
Sbjct: 316 TNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQ 375

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
           S   E L+ D+  LA+++ A AD   L+ GK+ HS  + N L+ D  + SS++++Y KC 
Sbjct: 376 S---ENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCE 432

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF-------------------- 261
               A +V +   + D    + L++ YA  G   +  ++F                    
Sbjct: 433 KLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVIL 492

Query: 262 --------DRTTDT-----------SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
                   D+  DT           + + W ++I G   N    EA L F  M   G+  
Sbjct: 493 GLLNKGKVDQAKDTFMEMQSLGICPNLITWTTLICGLAQNGLGDEAFLTFQSMEEAGIKP 552

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           ++ +++S+LSACS++  L HG+ +H +  +                              
Sbjct: 553 NSLSISSLLSACSTMASLPHGRAIHCYITR------------------------------ 582

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            EL V  T +L +++ +Y+ CG I  AK +F  +  K L  +N+MI G + +G  +EAL 
Sbjct: 583 HELSV-STPVLCSLVNMYAKCGSINQAKRVFDMILKKELPVYNAMISGYALHGQAVEALS 641

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           LF  + +  ++ D+ +  S++SAC +   +  G ++F
Sbjct: 642 LFRRLKEECIKPDEITFTSILSACGHAGLVREGLELF 678



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 153/346 (44%), Gaps = 63/346 (18%)

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
           + G   EA+ L  +L    +E +     +   ++  C    AL  G+QIH  IL NG   
Sbjct: 55  KQGHLLEALDLVTDLE---LEDITIGPDVYGELLQGCVYERALSLGQQIHGRILKNG--- 108

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           +S+                            +++  + L+  Y+ C +   A R+F +  
Sbjct: 109 ESI--------------------------AKNEYIETKLVIFYSKCDESEIANRLFGKLQ 142

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
             +   W +++        + EAL+ F +M   G+L D   +     A  +L ++  GK 
Sbjct: 143 VQNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKS 202

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           VH +  K+G+   + VA++LLD Y K                               CG 
Sbjct: 203 VHAYVVKMGLGGCIYVATSLLDMYGK-------------------------------CGL 231

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
            E+AK +F  +  K++++WNSMIV  +QNG   EA++ F  M    +   + +L+S +SA
Sbjct: 232 CEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSA 291

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            AN+S ++ G+Q  A   + GL+   I+ +SL++FY K G ++  E
Sbjct: 292 SANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVEDAE 337



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 111/231 (48%), Gaps = 17/231 (7%)

Query: 14  SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCF 73
           +C+T  S+  G+ +H +  +  +  ST P+   L+ MY +CG+   A  +FD + ++   
Sbjct: 563 ACSTMASLPHGRAIHCYITRHELSVST-PVLCSLVNMYAKCGSINQAKRVFDMILKKELP 621

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFNDM 129
            +NAMI G+   G   ++L LF  + ++    ++ ++  ++S    AG ++    LF DM
Sbjct: 622 VYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTSILSACGHAGLVREGLELFIDM 681

Query: 130 PRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
              + I      +  ++    R+    EA+R+       L    + DAFI  +++ AC +
Sbjct: 682 VSNHKIVAQAEHYGCLVSILSRSHNLDEALRII------LGMPFEPDAFIFGSLLAACRE 735

Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
               E  +++   +L    D +S    +L N Y   G ++ A++V  +MKE
Sbjct: 736 HPDFELKERLFERLLKLEPD-NSGNYVALSNAYAATGMWDEASKVRGLMKE 785



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 393 FRTMPNKSLISWNSM---IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           F  + +   IS+ S    I  L + G  +EALDL  ++   D+ +       ++  C   
Sbjct: 32  FSQIASNVQISYKSYLNHISSLCKQGHLLEALDLVTDLELEDITIGPDVYGELLQGCVYE 91

Query: 450 SSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKC 484
            +L LG+Q+  R+   G  +  ++ I T LV FY KC
Sbjct: 92  RALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKC 128


>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like isoform 1 [Cucumis sativus]
          Length = 703

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 230/487 (47%), Gaps = 57/487 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+ C +  +I  G+Q+H   LK G  NS   I N L+ MY++CG  + A LLFD     +
Sbjct: 68  LKYCASSSAISSGQQIHAIVLKYG-FNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLD 126

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
             S N M+ G++KL   E + QLF  MP++   S+  +I G A+           ND   
Sbjct: 127 SVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQ-----------ND--- 172

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
                W              EA+ +FK++ S  V     +   +A+V+ AC+ +  +   
Sbjct: 173 ----CWG-------------EAIEVFKDMRSAGVAP---NEVTMASVMSACSHIGGIWNC 212

Query: 192 KQIHSHILVNGLDFDS--VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
           + +H+  LV  L F    ++ ++L+++Y          ++ N M   +    + ++ GY 
Sbjct: 213 RMLHA--LVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYV 270

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             G ++ AR +F+R  +     W  MI G++      +ALLL+  MR++ +  +   +  
Sbjct: 271 KSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVD 330

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK----LFSEL 365
           +LSAC     +E G+Q H    K G +    + + ++  Y+       AC+     + + 
Sbjct: 331 LLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYA-------ACRRIDLAYLQY 383

Query: 366 KVYDTILL---NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           ++ D   L   N MI  ++  G I+ A+ IF  MP K + SW++MI G +QN  P  ALD
Sbjct: 384 QMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALD 443

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDF 480
           LF  M    +  ++ ++ SV SA A +  L  G      V   +I L+ +  +S +++D 
Sbjct: 444 LFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDN--LSAAIIDM 501

Query: 481 YCKCGFI 487
           Y KCG I
Sbjct: 502 YAKCGSI 508



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 200/403 (49%), Gaps = 39/403 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LFN MP +N  SWN+++ G+ K+G +  AR LF  +P R+  +W  MI  +V+    R+
Sbjct: 249 RLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRK 308

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ L+  +       L  +  ++  ++ AC    ++E G+Q HS I+ NG      + ++
Sbjct: 309 ALLLYSAMRKS---DLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQAT 365

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           +++ Y  C   + A     M  +      + +I G+   G ++ AR++FD   +     W
Sbjct: 366 IISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSW 425

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC- 331
           ++MISGY  N     AL LFH M  + V  +  T+ SV SA ++LG L  G+  H + C 
Sbjct: 426 STMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCN 485

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           KV  ++D + A A++D Y+K                               CG I+ A  
Sbjct: 486 KVIPLNDNLSA-AIIDMYAK-------------------------------CGSIDTALD 513

Query: 392 IFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +FR + +K  ++  WN++I GL+ +G    +L++F N+ +  ++++  +   V+SAC + 
Sbjct: 514 VFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHA 573

Query: 450 SSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             +E+GE+ F  + T  G++ +      LVD   + G ++  E
Sbjct: 574 GLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAE 616



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 171/327 (52%), Gaps = 3/327 (0%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           L C+  ++ + +  CA  +A+  G+QIH+ +L  G + ++ + +SL+N+Y KCG  +SA 
Sbjct: 58  LDCELSVV-SALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSAR 116

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
            + +     D    + ++SGY    ++ +AR++F +  +   V + +MI G   N+   E
Sbjct: 117 LLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGE 176

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+ +F  MR  GV  +  T+ASV+SACS +G + + + +H    K+     V++++ LL 
Sbjct: 177 AIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLH 236

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y       D  +LF+E+ V +T+  N M+  Y   G ++ A+ +F  +P + + SW  M
Sbjct: 237 MYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIM 296

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G  Q     +AL L+  M K DL  ++  +  ++SAC    S+E G Q  + +   G 
Sbjct: 297 IDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGF 356

Query: 468 DSDQIISTSLVDFYCKCGFIKMDEYYL 494
                I  +++ FY  C   ++D  YL
Sbjct: 357 VCFDFIQATIISFYAACR--RIDLAYL 381



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 67/312 (21%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N++I GF K G +  AR +F+ MP ++  +W++MI  Y +N     A+ LF  +    VE
Sbjct: 395 NVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSKVE 454

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               +   + +V  A A L  L  G+  H ++                            
Sbjct: 455 P---NEITMVSVFSAIAALGKLPEGRWAHEYV---------------------------C 484

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM--WNSMISGYISNNE 284
           N+V+ +    +D   +A+I  YA CG ++ A  VF +  D +S +  WN++I G   +  
Sbjct: 485 NKVIPL----NDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGH 540

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              +L +F  ++R  +  ++ T   VLSAC   G +E G++                   
Sbjct: 541 ANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERY------------------ 582

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LIS 403
                ++ G+  +       +K Y       ++ +    GR+ +A+ I RTMP K+ ++ 
Sbjct: 583 FWSMKTQHGVEPN-------IKHY-----GCLVDLLGRVGRLREAEEIVRTMPMKADVVI 630

Query: 404 WNSMIVGLSQNG 415
           W +++     +G
Sbjct: 631 WGTLLASSRTHG 642



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACANISSLE 453
           + P    + W S    +  +  P++ L  F N       +D + S+ S +  CA+ S++ 
Sbjct: 19  SFPPPLYLKWVSTFSTIESSPRPLQNLSSFLNGRPSSSSLDCELSVVSALKYCASSSAIS 78

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
            G+Q+ A V   G +S+  I  SL++ Y KCG +
Sbjct: 79  SGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLL 112


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 223/492 (45%), Gaps = 107/492 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L+  C    S+   K LH H LK G L S     ++L+  Y++C   T+A  LFDEMP R
Sbjct: 7   LIAQCTNKKSLTTLKSLHTHILKSGSLFSFF--GHKLIDGYIKCSVITEARKLFDEMPNR 64

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFS------------------- 105
           +  +WN+MI   +  G  +++++L++      V+P    FS                   
Sbjct: 65  HIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAH 124

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             ++  +AK G++K AR +F+ +  ++ + + ++I  Y ++G  
Sbjct: 125 GLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLD 184

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            EA+ +F+++   +  R++ + + LA+V+ +C +L  L  GK IH  ++  GL  +SV+ 
Sbjct: 185 GEALEVFEDM---VGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGL--ESVVA 239

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           S                              ++L++ Y+ C  + D+ +VF+     S V
Sbjct: 240 SQ-----------------------------TSLLTMYSKCNMVEDSIKVFNSLAYASHV 270

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            W S I G + N  +  AL +F +M R  +  +  TL+S+L ACSSL  LE G+Q+H   
Sbjct: 271 TWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVT 330

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
            K+GV  +  V +AL+  Y K G    A  +F  L   D + +NTMI  Y          
Sbjct: 331 VKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAY---------- 380

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                                +QNG   EAL+LF  + KL L  +  +  S++ AC N  
Sbjct: 381 ---------------------AQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAG 419

Query: 451 SLELGEQVFARV 462
            +E G Q+F+ +
Sbjct: 420 LVEEGCQIFSLI 431



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 186/403 (46%), Gaps = 73/403 (18%)

Query: 87  HKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
           H  KS  LF+    K       LI G+ K   +  AR LF++MP R+ + WNSMI  +V 
Sbjct: 26  HILKSGSLFSFFGHK-------LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVS 78

Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF- 205
            G  +EA+ L+  +   L E +  DA+  + +  A +++     G++ H   +V G +  
Sbjct: 79  RGKTKEAIELYSNM---LFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVS 135

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D  + + +V++Y K G    A  V + + + D    +ALI GY   G   +A  VF+   
Sbjct: 136 DGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFE--- 192

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
                    M+   I  NE                     TLASVL +C +LG L +GK 
Sbjct: 193 --------DMVGSRIKPNE--------------------YTLASVLVSCGNLGDLVNGKL 224

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +HG   K G+   V   ++LL  YSK                               C  
Sbjct: 225 IHGLVVKYGLESVVASQTSLLTMYSK-------------------------------CNM 253

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +ED+  +F ++   S ++W S IVGL QNG    AL +F  M +  +  + F+L+S++ A
Sbjct: 254 VEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHA 313

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           C++++ LE GEQ+ A    +G+D ++ +  +L+  Y KCG ++
Sbjct: 314 CSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVE 356



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 64/313 (20%)

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
           ++I  C +  +L   K +H+HIL +G         SL + +G                  
Sbjct: 6   SLIAQCTNKKSLTTLKSLHTHILKSG---------SLFSFFGH----------------- 39

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
                  LI GY  C  + +AR++FD   +   V WNSMIS ++S  +  EA+ L+  M 
Sbjct: 40  ------KLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNML 93

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMP 355
             GVL DA T +++  A S +G    G++ HG A  +G  + D  VA+ ++D Y+K    
Sbjct: 94  FEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAK---- 149

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                                       G+++DA+ +F  + +K ++ + ++IVG +Q+G
Sbjct: 150 ---------------------------FGKMKDARFVFDRVLDKDVVLFTALIVGYNQHG 182

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EAL++F +M    ++ ++++LASV+ +C N+  L  G+ +   V   GL+S     T
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQT 242

Query: 476 SLVDFYCKCGFIK 488
           SL+  Y KC  ++
Sbjct: 243 SLLTMYSKCNMVE 255



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 106/245 (43%), Gaps = 26/245 (10%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L +C++   +  G+Q+H   +K G+  +   +   L+ +Y +CGN   A  +FD +
Sbjct: 307 LSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKF-VDAALIHLYGKCGNVEKARSVFDSL 365

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
              +  S N MI  + + G   ++L+LF  +     + N  ++  ++     AG ++   
Sbjct: 366 TELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGC 425

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKE-LNSDLVERLQCDAFILAT 177
            +F+ +   ++I      +  MI    R     EA  L +E  N D+++          T
Sbjct: 426 QIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQ--------WRT 477

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN------SANQVLN 231
           ++ AC     +E  ++    +L +    D      L N+Y   G ++      SA + L 
Sbjct: 478 LLNACKIHGEVEMAEKFMKKML-DQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLR 536

Query: 232 MMKEP 236
           + K P
Sbjct: 537 LKKTP 541


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 178/361 (49%), Gaps = 14/361 (3%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG--HKEKSLQLFN-VMPQK 101
           N+ +    R G+   A  +FD MP R+  SWNA++    + G  H   + +LF+  MP +
Sbjct: 19  NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSR 78

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           +  SWN +I+G    G+L  A   F   P+RN   WN+M+   +R G A +A RLF E+ 
Sbjct: 79  DVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMP 138

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
                  + +     T++   A    +   +++   +     D + V  +++++ Y + G
Sbjct: 139 -------KRNVVSYTTMVDGLARRGEVARAREVFDAMP----DRNLVSWAAMISGYVENG 187

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
            F  A ++   M E +    +A+I+ Y   G +  ARR+FD       + WN+MI+GY+ 
Sbjct: 188 MFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVH 247

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N    EA+ L   M R GV  D +TL +VL+ACS+L  L  GK  H  A K  +   +  
Sbjct: 248 NGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISF 307

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
           ++AL+  YSK G   ++  +F  L+  D +  NT+I  Y+  G+ +    +F  M    L
Sbjct: 308 SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGL 367

Query: 402 I 402
           I
Sbjct: 368 I 368



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 139/308 (45%), Gaps = 34/308 (11%)

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK--MNDARRVFDRTTDTSSVM 271
           ++   + GD  +A +V + M   D    +AL++     G+  +  ARR+FD    +  V+
Sbjct: 22  ISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDVV 81

Query: 272 -WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
            WNS+I+G +++ +   A   F    +  V    +T  ++L+    LG  +   ++ G  
Sbjct: 82  SWNSIIAGCLAHGDLDAASAYFAGAPKRNV----ATWNAMLAGLLRLGRADDADRLFGEM 137

Query: 331 CKVGVID---------------------------DVIVASALLDTYSKRGMPSDACKLFS 363
            K  V+                            +++  +A++  Y + GM  +A KLF 
Sbjct: 138 PKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFE 197

Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
            +   + +    MIT Y   G +E A+ +F  +  K +ISWN+MI G   NG   EA+ L
Sbjct: 198 AMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRL 257

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
              M +  ++ D  +L +V++AC+ ++ L  G+   A      L+S    S +L+  Y K
Sbjct: 258 HAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSK 317

Query: 484 CGFIKMDE 491
           CG +   E
Sbjct: 318 CGNVGESE 325



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 17/237 (7%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  +L +C+    +  GK  H   +K  +L S +  +N L+ MY +CGN  ++ L+F  +
Sbjct: 273 LIAVLTACSALALLRQGKSTHAIAIK-AMLESGISFSNALMTMYSKCGNVGESELVFINL 331

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
             ++  SWN +I  + + G  +K + LF+ M       +D ++  ++S     G++  + 
Sbjct: 332 RTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASL 391

Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
            LF+ M  + AI+     +  ++    R G   +A    K++       L+ +  +  ++
Sbjct: 392 KLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMP------LEAEKNVWGSL 445

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           +GAC     ++ G ++ + +LV      S     L N+Y   G +   NQV   MKE
Sbjct: 446 LGACQMHGNVQLG-ELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKE 501


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 195/400 (48%), Gaps = 80/400 (20%)

Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
           N F  + L++ +AK G ++ AR +F++M RRN +AW +++  +V+N   + A+ +F+E+ 
Sbjct: 101 NFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEM- 159

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
             L        + L+ V+ AC+ L +L+ G Q H++I+   +DFD+ +GS+L +LY K  
Sbjct: 160 --LYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSK-- 215

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                        CG++ DA + F R  + + + W S +S    
Sbjct: 216 -----------------------------CGRLEDALKTFSRIREKNVISWTSAVSACAD 246

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           N    + L LF +M    +  +  TL S LS C  +  LE G QV+    K G   ++ V
Sbjct: 247 NGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRV 306

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            ++LL  Y K G   +A +LF+                     R++DA          S+
Sbjct: 307 RNSLLYLYLKSGCIVEAHRLFN---------------------RMDDA----------SM 335

Query: 402 ISWNSMIVGLSQ-------------NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           ++WN+MI G +Q              GS  EAL LF  +N   ++ D F+L+SV+S C+ 
Sbjct: 336 VTWNAMIAGHAQMMELTKDNLSACHRGS--EALKLFSKLNLSGMKPDLFTLSSVLSVCSR 393

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           + ++E GEQ+ A+    G  SD I+STSL+  Y KCG I+
Sbjct: 394 MLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIE 433



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 215/468 (45%), Gaps = 71/468 (15%)

Query: 7   YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           +   LLQ C    S    + +H H +K G  +    + + L+ +Y +CGN  DA  +FD 
Sbjct: 69  FYVPLLQQCLDTRSYSETQIVHGHVMKTGC-HDNFFVMSFLVNVYAKCGNMEDARRVFDN 127

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFN------------------------------ 96
           M RRN  +W  ++ GF++    + ++ +F                               
Sbjct: 128 MLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLG 187

Query: 97  ------VMPQKNDFSWNM---LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
                 ++    DF  ++   L S ++K G L+ A   F+ +  +N I+W S +     N
Sbjct: 188 DQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADN 247

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
           G   + +RLF E+   +   ++ + F L + +  C ++ +LE G Q++S  +  G + + 
Sbjct: 248 GAPVKGLRLFVEM---IAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNL 304

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
            + +SL+ LY K G    A+++ N M +      +A+I+G+A         ++ + T D 
Sbjct: 305 RVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHA---------QMMELTKDN 355

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
            S           + +  +EAL LF K+  +G+  D  TL+SVLS CS +  +E G+Q+H
Sbjct: 356 LS-----------ACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIH 404

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
               K G + DVIV+++L+  YSK G    A K F E+     I   +MIT +S  G  +
Sbjct: 405 AQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQ 464

Query: 388 DAKHIFRTM------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
            A HIF  M      PN   +++  ++   S  G   +AL+ F  M K
Sbjct: 465 QALHIFEDMSLAGVRPNA--VTFVGVLSACSHAGMVSQALNYFEIMQK 510


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 228/522 (43%), Gaps = 113/522 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           L Q+     S+ +GK  H H +K  +      + N LL MY +C     A  LFD MP R
Sbjct: 53  LFQTAAKSGSVVLGKLAHGHMIKSSLNPCLY-LLNNLLNMYCKCRELGFARQLFDRMPER 111

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN----DFSW-------------------- 106
           N  S+N++I G+ ++G  E++++LF    + N     F++                    
Sbjct: 112 NIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLH 171

Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N+LI  ++K G+L  A +LF+    R+ ++WNS+I  YVR G A 
Sbjct: 172 GLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAE 231

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACA---DLAALEYGKQIHSHILVNGLDFDSV 208
           E + L  +++ D    L    + L +V+ AC    +   +E G  IH +    G++FD V
Sbjct: 232 EPLNLLAKMHRD---GLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIV 288

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++L+++Y K G                                + +A ++F      +
Sbjct: 289 VRTALLDMYAKNGS-------------------------------LKEAIKLFSLMPSKN 317

Query: 269 SVMWNSMISGYISNNEDT-----EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
            V +N+MISG++  +E T     EA  LF  M+R G+    ST + VL ACS+   LE+G
Sbjct: 318 VVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYG 377

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           +Q+H   CK     D  + SAL                               I +Y+  
Sbjct: 378 RQIHALICKNNFQSDEFIGSAL-------------------------------IELYALM 406

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
           G  ED    F +   + + SW SMI    QN     A DLF  +    +R ++++++ ++
Sbjct: 407 GSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMM 466

Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           SACA+ ++L  GEQ+       G+D+   + TS +  Y K G
Sbjct: 467 SACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSG 508



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 204/479 (42%), Gaps = 113/479 (23%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C     + +G+ LH   +  G L+  + + N L+ MY +CG    A+ LFD    R+  S
Sbjct: 158 CGERCDLDLGELLHGLVVVNG-LSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVS 216

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------------- 100
           WN++I G++++G  E+ L L   M +                                  
Sbjct: 217 WNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHC 276

Query: 101 ---KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR-----N 147
              K    +++     L+  +AK G LK A  LF+ MP +N + +N+MI  +++     +
Sbjct: 277 YTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITD 336

Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
             + EA +LF ++       L+      + V+ AC+    LEYG+QIH+ I  N      
Sbjct: 337 EASSEAFKLFMDMQR---RGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNF---- 389

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                      + D+F  SALI  YA  G   D  + F  T+  
Sbjct: 390 ---------------------------QSDEFIGSALIELYALMGSTEDGMQCFASTSKQ 422

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
               W SMI  ++ N +   A  LF ++  + +  +  T++ ++SAC+    L  G+Q+ 
Sbjct: 423 DIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQ 482

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
           G+A K G+                     DA   F+ +K        + I++Y+  G + 
Sbjct: 483 GYAIKSGI---------------------DA---FTSVKT-------SSISMYAKSGNMP 511

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
            A  +F  + N  + ++++MI  L+Q+GS  EAL++F +M    ++ ++ +   V+ AC
Sbjct: 512 LANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIAC 570



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 34/244 (13%)

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
           Y  C ++  AR++FDR  + + + +NS+ISGY       +A+ LF + R   +  D  T 
Sbjct: 92  YCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTY 151

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           A  L  C     L+ G+ +HG     G+   V + + L+D YSK G    A  LF     
Sbjct: 152 AGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDE 211

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
            D +  N++I+ Y   G  E                               E L+L   M
Sbjct: 212 RDQVSWNSLISGYVRVGAAE-------------------------------EPLNLLAKM 240

Query: 428 NKLDLRMDKFSLASVISACA---NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
           ++  L +  ++L SV+ AC    N   +E G  +      +G++ D ++ T+L+D Y K 
Sbjct: 241 HRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKN 300

Query: 485 GFIK 488
           G +K
Sbjct: 301 GSLK 304



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y  C  +  A+ +F  MP +++IS+NS+I G +Q G   +A++LF    + +L++DKF+
Sbjct: 91  MYCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFT 150

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            A  +  C     L+LGE +   V + GL     +   L+D Y KCG  K+D+
Sbjct: 151 YAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCG--KLDQ 201


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 205/448 (45%), Gaps = 69/448 (15%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIEG 81
           G   H H LK G   S   + N ++ MY R G    A  +FDE+P   R    WNAM+ G
Sbjct: 114 GIGFHAHVLKLG-HGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSG 172

Query: 82  FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
           + K   + ++  LF+VMP++N  +W  +++G+AK  +L+ AR  F+ MP R+ ++WN+M+
Sbjct: 173 YWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAML 232

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
             Y +NG A EA+RLF E+ +  +E    D     TVI AC+          +   +   
Sbjct: 233 SGYAQNGLAEEALRLFDEMVNAGIEP---DETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
            +  +  + ++L+++Y K GD +SA ++ N M   +    +++I+GYA            
Sbjct: 290 RIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQ----------- 338

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFL 320
                               N +   A+ LF +M     +  D  T+ SV+SAC  LG L
Sbjct: 339 --------------------NGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGAL 378

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
           E G  V     +  +   +   +A++  YS+ G   DA ++F E+   D +  NT+I+  
Sbjct: 379 ELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLIS-- 436

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
                                        G + +G  +EA++L   M +  +  D+ +  
Sbjct: 437 -----------------------------GFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 467

Query: 441 SVISACANISSLELGEQVFARVTIIGLD 468
            V++AC++   LE G +VF  +    +D
Sbjct: 468 GVLTACSHAGLLEEGRKVFESIKDPAID 495



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 157/318 (49%), Gaps = 38/318 (11%)

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG--SSLVNLYGKCGDFNSANQ 228
           DAF+   VI   A L  + + +++   I     D++  +   +++V+ Y K      A  
Sbjct: 129 DAFVRNAVIDMYARLGPIGHARKVFDEIP----DYERKVADWNAMVSGYWKWESEGQAQW 184

Query: 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
           + ++M E +    +A+++GYA    +  ARR FD   + S V WN+M+SGY  N    EA
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 244

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L LF +M   G+  D +T  +V+SACSS G                   D  +A++L+ T
Sbjct: 245 LRLFDEMVNAGIEPDETTWVTVISACSSRG-------------------DPCLAASLVRT 285

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
             ++ +              +  +   ++ +Y+  G ++ A+ +F TMP +++++WNSMI
Sbjct: 286 LHQKRIQ------------LNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMI 333

Query: 409 VGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
            G +QNG    A++LF  M     L  D+ ++ SVISAC ++ +LELG  V   +T   +
Sbjct: 334 AGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQI 393

Query: 468 DSDQIISTSLVDFYCKCG 485
                   +++  Y +CG
Sbjct: 394 KLSISGHNAMIFMYSRCG 411


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/558 (24%), Positives = 236/558 (42%), Gaps = 137/558 (24%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           + ++   ++ C    ++  GK  H H +K G  +  + IA  L+ MY       DA  LF
Sbjct: 3   LKHIVAAIRHCGRVKALKQGKSFHSHLIKTG-YSHNVYIACNLVSMYADFTFLIDAYKLF 61

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKNDFSW------------- 106
           DEMP +N  +W  M+  +   G   ++++L+  M        N F +             
Sbjct: 62  DEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEI 121

Query: 107 ----------------------NMLISGFAKAGELKTARTLFNDM-PRRNAIAWNSMIHC 143
                                 N L+  + K G L  AR +F+ +  R N+ +WN+MI  
Sbjct: 122 ELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISG 181

Query: 144 YVRNGFAREAVRLFKELNSDLV---------------------------ERLQCDAFILA 176
           Y + G   EAV LF ++    V                           E ++ D F   
Sbjct: 182 YFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFP 241

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
             +  C+    L  GKQIH ++L +GL+      S+LV++                    
Sbjct: 242 CALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDM-------------------- 281

Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSS------VMWNSMISGYISNNEDTEALL 290
                      Y+NC  ++DA R+FD+ +  +       V+WNSM+SGY+ + ++  A+ 
Sbjct: 282 -----------YSNCNGLDDAIRLFDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVN 330

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +  ++  +G   D+ TL+S L  C +L  +  G QVH      G   D +V S L+D Y+
Sbjct: 331 MIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYA 390

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G   DA KLF  L                               P K +++W+ +++G
Sbjct: 391 KLGNMKDAFKLFHRL-------------------------------PKKDIVAWSGLLMG 419

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
            ++      AL LF +M    + +D++ +++V+  C++++S+  G+QV A     G +++
Sbjct: 420 CAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETE 479

Query: 471 QIISTSLVDFYCKCGFIK 488
           Q+  T+L+D Y KCG ++
Sbjct: 480 QVTITALIDMYSKCGEVE 497



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 133/564 (23%), Positives = 225/564 (39%), Gaps = 155/564 (27%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD----- 65
           +L++C     I +G+ +H  F ++  L+  + + N LL MY++CG  +DA  +FD     
Sbjct: 111 VLKACGLVGEIELGRLIHKRFSREN-LDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLR 169

Query: 66  ---------------------------EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
                                      +MP RN  SWN +I G  + G   ++LQ    M
Sbjct: 170 ANSTSWNTMISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENG-SSRALQFVCKM 228

Query: 99  PQK----NDFSWNMLI-----SGFAKAGE------------------------------L 119
            ++    + F++   +     +GF  AG+                              L
Sbjct: 229 HREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGL 288

Query: 120 KTARTLFNDMPRRNA------IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF 173
             A  LF+             + WNSM+  YV +   R AV +  +++         D++
Sbjct: 289 DDAIRLFDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHS---GASVDSY 345

Query: 174 ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            L++ +  C +L  +  G Q+H+ I+ +G + D V+GS LV+LY K G+           
Sbjct: 346 TLSSALKVCINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGN----------- 394

Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
                               M DA ++F R      V W+ ++ G      ++ AL LF 
Sbjct: 395 --------------------MKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSLALSLFR 434

Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
            M   GV  D   +++VL  CSSL  +  GKQVH    K G   + +  +AL+D YSK  
Sbjct: 435 DMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSK-- 492

Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
                                        CG +ED   +F  + ++ ++ W  +IVG +Q
Sbjct: 493 -----------------------------CGEVEDGLVLFGCVADRDVVCWTGIIVGCAQ 523

Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           NG   EAL++F  M +  L+ ++ +   V++AC +   +   + +F       +  D  +
Sbjct: 524 NGRANEALEIFRQMVQSGLKPNEVTYLGVLTACRHAGLVVEAQTIFGT-----MKCDHRL 578

Query: 474 STSL------VDFYCKCGFIKMDE 491
              L      VD  C+ G+ K  E
Sbjct: 579 EPQLEHYYCMVDLLCQAGYFKEVE 602



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 36/186 (19%)

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D   + + +  C  +  L+ GK  H H  K G   +V +A  L+  Y+      DA KLF
Sbjct: 2   DLKHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLF 61

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
            E+ V + +   TM++ Y+S                               NG P EA+ 
Sbjct: 62  DEMPVKNIVTWTTMVSAYTS-------------------------------NGKPREAIK 90

Query: 423 LFCNMNKLDLRMD---KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479
           L+  M  LD + +    F  + V+ AC  +  +ELG  +  R +   LD D ++  +L+D
Sbjct: 91  LYTRM--LDSKSEVPNGFMYSVVLKACGLVGEIELGRLIHKRFSRENLDYDIVLLNALLD 148

Query: 480 FYCKCG 485
            Y KCG
Sbjct: 149 MYVKCG 154



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 79/192 (41%), Gaps = 40/192 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+  L+ C    ++ +G Q+H   +  G       + + L+ +Y + GN  DA  LF  +
Sbjct: 347 LSSALKVCINLLNVRLGIQVHALIVTSG-HELDYVVGSILVDLYAKLGNMKDAFKLFHRL 405

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF----------------NVMP------------ 99
           P+++  +W+ ++ G  K+     +L LF                NV+             
Sbjct: 406 PKKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGK 465

Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                      +    +   LI  ++K GE++    LF  +  R+ + W  +I    +NG
Sbjct: 466 QVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDVVCWTGIIVGCAQNG 525

Query: 149 FAREAVRLFKEL 160
            A EA+ +F+++
Sbjct: 526 RANEALEIFRQM 537


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 213/494 (43%), Gaps = 112/494 (22%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           ++L + N LL  Y R G P  A  L DEMPRRN  S+N +I+ + + G    SL+     
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 99  PQK----NDFSW-----------------------------------NMLISGFAKAGEL 119
            +     + FS+                                   N L+S ++K GE+
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             AR +F+    R+ ++WNS++  YVR G   E VR+F  +       +  ++F L +VI
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRG---GMGLNSFALGSVI 217

Query: 180 GACADL--AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
             C+      ++  + +H  ++  GLD D  L S+++++Y K G    A  +   ++EP+
Sbjct: 218 KCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY------ISNNEDTEALLL 291
                                           VM+N+MI+G+      I     +EAL L
Sbjct: 278 -------------------------------VVMFNTMIAGFCRTETVIGKEVASEALTL 306

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           + +++  G+     T +SVL AC+  G+LE GKQ+HG   K    +D  + SAL+D Y  
Sbjct: 307 YSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN 366

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G                                +ED    FR+ P   +++W +M+ G 
Sbjct: 367 SGC-------------------------------MEDGFRCFRSSPKHDIVTWTAMVSGC 395

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            QN    +AL LF       L+ D F+++SV++ACA+++    GEQ+    T  G D   
Sbjct: 396 VQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFT 455

Query: 472 IISTSLVDFYCKCG 485
           ++  S V  Y + G
Sbjct: 456 VMGNSCVHMYARSG 469



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 212/491 (43%), Gaps = 96/491 (19%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C+    +  G+ +H   +  G L+S + ++N L+ MY +CG   +A  +FD    R+  S
Sbjct: 119 CSRAGHLRAGRAVHALAILDG-LSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVS 177

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLI---SG--------------- 112
           WN+++ G+++ G +E+ +++F +M +     N F+   +I   SG               
Sbjct: 178 WNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGC 237

Query: 113 -------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG----- 148
                              +AK G L  A  LF  +   N + +N+MI  + R       
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297

Query: 149 -FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
             A EA+ L+ E+ S     +Q   F  ++V+ AC     LE+GKQIH            
Sbjct: 298 EVASEALTLYSEVQS---RGMQPTEFTFSSVLRACNLAGYLEFGKQIH------------ 342

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                               QV+    + DDF  SALI  Y N G M D  R F  +   
Sbjct: 343 -------------------GQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKH 383

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W +M+SG + N    +AL LFH+    G+  D  T++SV++AC+SL     G+Q+ 
Sbjct: 384 DIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQ 443

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             A K G     ++ ++ +  Y++ G    A + F E++ +D +  + +I+ ++  G   
Sbjct: 444 CFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCAR 503

Query: 388 DAKHIF------RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
           DA H F      + +PN+  I++  ++   S  G   E L  +  M K       + L+ 
Sbjct: 504 DALHFFDEMVDAKVVPNE--ITFLGVLTACSHGGLVDEGLRYYETMTK------DYGLSP 555

Query: 442 VISACANISSL 452
            I  C  +  L
Sbjct: 556 TIKHCTCVVDL 566



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 34/176 (19%)

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L AC+SL                               ++       A  LF       
Sbjct: 17  LLRACTSL-------------------------RHAAAVHAHIARAHPAASLF------- 44

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             L NT++  Y   G    A+ +   MP ++ +S+N +I   S+ G    +L+      +
Sbjct: 45  --LRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARR 102

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             + +D+FS A+ ++AC+    L  G  V A   + GL S   +S SLV  Y KCG
Sbjct: 103 AGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/519 (23%), Positives = 231/519 (44%), Gaps = 102/519 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L++C     +  G+ LH + +K+GI +  L + + L  MY +C    DA +LF E+  ++
Sbjct: 228 LEACGVLGELSAGRCLHGYAVKEGIRDCAL-VVSALFSMYSKCDMTEDACILFPELTEKD 286

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------- 100
             SW  +I  + + G   ++++LF  M Q                               
Sbjct: 287 VVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHA 346

Query: 101 ---KNDFS-----WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
              + +F       N LIS + K   +  A T+F  + +R+  +W+ M+  Y + G   +
Sbjct: 347 VIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVK 406

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
            + L++++     +   CD   L + I +C+ L  L  G+ +H + +   LD +S+  +S
Sbjct: 407 CLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDENSIT-NS 465

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+ +YG+CG+F  A ++  + K   D                               V W
Sbjct: 466 LIGMYGRCGNFELACKIFAVAKLRRDV------------------------------VTW 495

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
           N++IS Y       +AL L+ +M    V  ++STL +V+SAC++L  LEHG+ +H +   
Sbjct: 496 NALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKN 555

Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
           +G+  DV +++AL+D Y+K                               CG++  A+ I
Sbjct: 556 MGLESDVSISTALVDMYTK-------------------------------CGQLGTARGI 584

Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
           F +M  + +++WN MI G   +G   +AL LF  M    ++ +  +  +++SAC +   +
Sbjct: 585 FDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLV 644

Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
           + G ++F R+    L+ +      +VD   K G ++  E
Sbjct: 645 DEGRKLFIRMGGYRLEPNLKHYACMVDLLGKSGLLQEAE 683



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 227/512 (44%), Gaps = 115/512 (22%)

Query: 23  VGKQLHLHFLKKGIL--NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           VG  +H + +K G+L  + ++ +++ L+ MY RCG+  DA+ LFDEM  R+  +W A++ 
Sbjct: 131 VGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVS 190

Query: 81  GFMKLGHKEKSLQLFNVM--------PQKNDFSWNMLISGFAKAGELKTAR--------- 123
           G ++ G   K +     M         + N  +    +      GEL   R         
Sbjct: 191 GCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKE 250

Query: 124 --------------------------TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
                                      LF ++  ++ ++W  +I  Y R G AREAV LF
Sbjct: 251 GIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELF 310

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
           +E+       LQ D  +++ V+      A +  GK  H+ I+        ++ +SL+++Y
Sbjct: 311 QEMEQ---SGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMY 367

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
           GK    + A  V  M+ + DD   S +++GY   G                         
Sbjct: 368 GKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGL------------------------ 403

Query: 278 GYISNNEDTEALLLFHKMR---RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
                  D + L L+ +M+    +  L D ++L S +S+CS LG L  G+ VH ++ K  
Sbjct: 404 -------DVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKC- 455

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIF 393
           ++D+  + ++L+  Y + G    ACK+F+  K+  D +  N +I+ YS  GR  D     
Sbjct: 456 LLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSND----- 510

Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
                                     AL L+  M   D++ +  +L +VISACAN+++LE
Sbjct: 511 --------------------------ALSLYGQMLTEDVKPNSSTLITVISACANLAALE 544

Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            GE + + V  +GL+SD  IST+LVD Y KCG
Sbjct: 545 HGELLHSYVKNMGLESDVSISTALVDMYTKCG 576



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 38/248 (15%)

Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           L+S Y++ G    A   F  +    + +WNS++  +   ++   AL    +MR +G    
Sbjct: 53  LVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASDFDSALSAHRRMRASGARPS 112

Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI---DDVIVASALLDTYSKRGMPSDACK 360
             T     SA + L  L  G  VH ++ K G++     V V+S+L+  Y++ G   DA K
Sbjct: 113 RFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVK 172

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
           LF E                               M  + +++W +++ G  +NG   + 
Sbjct: 173 LFDE-------------------------------MVERDVVAWTAVVSGCVRNGECGKG 201

Query: 421 LDLFCNMNKL----DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
           +     M +L      R +  ++ S + AC  +  L  G  +       G+    ++ ++
Sbjct: 202 ICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSA 261

Query: 477 LVDFYCKC 484
           L   Y KC
Sbjct: 262 LFSMYSKC 269


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 230/520 (44%), Gaps = 109/520 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L+ C+    I  G ++H    K G  ++ + + N LL +Y  CG   DA  LFDEMP R
Sbjct: 16  VLKLCSDSFDICKGMEVHGVVFKLG-FDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPER 74

Query: 71  NCFSWNAMIEGFMKLGH------------------KEKSLQLFNVMP------------- 99
           +  SWN +I G + +                    K   + + +++P             
Sbjct: 75  DVVSWNTII-GLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRR 133

Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
                          + N L+  + K G +K    +FN+   +N ++WNS+I+     G 
Sbjct: 134 IHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGR 193

Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
             +A+  F+ +   +    Q ++  +++++    +L   + GK+IH   +  G + D  +
Sbjct: 194 CWDALNAFRMM---IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFI 250

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
            +SL+++Y K G    A+ + + +                      D R +         
Sbjct: 251 ANSLIDMYAKSGHSTEASTIFHNL----------------------DRRNI--------- 279

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
           V WN+MI+ Y  N    EA+    +M+  G   +A T  +VL AC+ LGFL  GK++H  
Sbjct: 280 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAM 339

Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
             ++G+  D+ V+++L+D Y+K                               CG +  A
Sbjct: 340 GVRIGLTSDLFVSNSLIDMYAK-------------------------------CGCLHSA 368

Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +++F T   K  +S+N +I+G S+    +++L+LF  M  L  + D  S   VISACAN+
Sbjct: 369 RNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANL 427

Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
           ++L+ G++V        L S   +S SL+DFY KCG I +
Sbjct: 428 AALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDI 467



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 227/504 (45%), Gaps = 108/504 (21%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF-- 82
           +++H + +K G L+S +   N L+  Y +CG+      +F+E   +N  SWN++I G   
Sbjct: 132 RRIHCYSVKVG-LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLAC 190

Query: 83  --------------MKLGHKEKSLQLFNVMP-----------------------QKNDFS 105
                         +  G +  S+ + +++P                       + + F 
Sbjct: 191 KGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFI 250

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N LI  +AK+G    A T+F+++ RRN ++WN+MI  Y  N    EA+R   ++     
Sbjct: 251 ANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQ---- 306

Query: 166 ERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           E  +C +A     V+ ACA L  L  GK+IH+  +  GL  D  + +SL+++Y K     
Sbjct: 307 ETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAK----- 361

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                     CG ++ AR VF+ T+    V +N +I GY   ++
Sbjct: 362 --------------------------CGCLHSARNVFN-TSRKDEVSYNILIIGYSETDD 394

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             ++L LF +MR  G   D  +   V+SAC++L  L+ GK+VHG A +  +   + V+++
Sbjct: 395 CLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNS 454

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           LLD Y+K G    AC+LF+++   D    NTMI  Y   G +E A  +F  M + +    
Sbjct: 455 LLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDT---- 510

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
                                      ++ D  S  +V+SAC++   +E G Q F+ +  
Sbjct: 511 ---------------------------VQYDLVSYIAVLSACSHGGLVERGWQYFSEMLA 543

Query: 465 IGLDSDQIISTSLVDFYCKCGFIK 488
             L+  ++  T +VD   + GF++
Sbjct: 544 QRLEPTEMHYTCMVDLLGRAGFVE 567



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 178/419 (42%), Gaps = 80/419 (19%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF- 82
           GK++H   ++ G   + + IAN L+ MY + G+ T+A  +F  + RRN  SWNAMI  + 
Sbjct: 232 GKEIHGFSMRMGT-ETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYA 290

Query: 83  ---------------MKLGHKEKSLQLFNVMP-----------------------QKNDF 104
                           + G    ++   NV+P                         + F
Sbjct: 291 LNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLF 350

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LI  +AK G L +AR +FN   R++ +++N +I  Y       +++ LF E+   L
Sbjct: 351 VSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMR--L 407

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           + + + D      VI ACA+LAAL+ GK++H   L N L     + +SL++ Y KC    
Sbjct: 408 LGK-KPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKC---- 462

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
                                      G+++ A R+F++        WN+MI GY    E
Sbjct: 463 ---------------------------GRIDIACRLFNQILFKDVASWNTMILGYGMIGE 495

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
              A+ +F  MR + V  D  +  +VLSACS  G +E G Q         +    +  + 
Sbjct: 496 LETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTC 555

Query: 345 LLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIE----DAKHIFRTMPN 398
           ++D   + G   +A KL  +L +  D  +   ++      G +E     A+H+F   P 
Sbjct: 556 MVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQ 614



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 157/389 (40%), Gaps = 102/389 (26%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           +Q D      V+  C+D   +  G ++H  +   G D D  +G++L+ LYG         
Sbjct: 6   VQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYG--------- 56

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
                                 NCG +NDARR+FD   +   V WN++I     N + TE
Sbjct: 57  ----------------------NCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTE 94

Query: 288 AL-LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
           A    F  + R+ +  +  ++ S+L   ++L   E  +++H ++ KVG+   V   +AL+
Sbjct: 95  ARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALV 154

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKS 400
           D Y K G      ++F+E    + +  N++I   +  GR  DA + FR M      PN  
Sbjct: 155 DAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSV 214

Query: 401 LIS---------------------------------WNSMIVGLSQNGSPIEALDLFCN- 426
            IS                                  NS+I   +++G   EA  +F N 
Sbjct: 215 TISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNL 274

Query: 427 ----------------MNKLDLRMDKF--------------SLASVISACANISSLELGE 456
                           +N+L L   +F              +  +V+ ACA +  L  G+
Sbjct: 275 DRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGK 334

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ A    IGL SD  +S SL+D Y KCG
Sbjct: 335 EIHAMGVRIGLTSDLFVSNSLIDMYAKCG 363



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 32/195 (16%)

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           M R GV  D  T   VL  CS    +  G +VHG   K+G   DV V             
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVG------------ 48

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
                              NT++ +Y +CG + DA+ +F  MP + ++SWN++I  LS N
Sbjct: 49  -------------------NTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVN 89

Query: 415 GSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           G   EA + +  M  +  ++ +  S+ S++   A +   E+  ++      +GLDS    
Sbjct: 90  GDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTT 149

Query: 474 STSLVDFYCKCGFIK 488
             +LVD Y KCG +K
Sbjct: 150 CNALVDAYGKCGSVK 164



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 16/232 (6%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           ++ +C    ++  GK++H   L+   L S L ++N LL  Y +CG    A  LF+++  +
Sbjct: 420 VISACANLAALKQGKEVHGVALRNH-LYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFK 478

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLF 126
           +  SWN MI G+  +G  E ++ +F  M     Q +  S+  ++S  +  G ++     F
Sbjct: 479 DVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYF 538

Query: 127 NDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           ++M  +      + +  M+    R GF  EA +L ++L       +  DA I   ++GAC
Sbjct: 539 SEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLP------IAPDANIWGALLGAC 592

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
                +E G++   H+              L N+Y + G ++ AN++  +MK
Sbjct: 593 RIYGNVELGRRAAEHLFELKPQHCGYY-ILLSNIYAETGRWDEANKIRELMK 643


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 219/479 (45%), Gaps = 80/479 (16%)

Query: 24  GKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
            KQLH       IL S  P   +A++L+ +Y +  +   A  +FD++P +N FS+NAM+ 
Sbjct: 43  AKQLHARL----ILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLI 98

Query: 81  GFMKLGHKEKSLQLFNVMPQKN-------------------------------------- 102
            +        +L LF+ +   N                                      
Sbjct: 99  SYSLHNRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFD 158

Query: 103 --DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
              F  N LI+ ++K  +L  +R +F+ M +R+ ++WNSMI  Y + G   +   L++E+
Sbjct: 159 ADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREM 218

Query: 161 NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220
                   + +   + +V+ AC     L +G ++H  I+ N ++ D  + ++L+ LY KC
Sbjct: 219 VD--FSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKC 276

Query: 221 GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYI 280
           G  + A ++ + M E D+    A+ISG    G ++ +  +F          WN++I+G +
Sbjct: 277 GSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLV 336

Query: 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
            NN     L L  +M+  G   +A TL+SVLS  +    L+ GK++H +A K+G   ++ 
Sbjct: 337 QNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIY 396

Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
           VA+A++D Y+K G    A ++F + K                               ++S
Sbjct: 397 VATAIIDMYAKSGYLRGAQRVFDQSK-------------------------------DRS 425

Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           L+ W ++I   + +G    AL LF  M K  ++ D  +  +V++ACA+   ++   ++F
Sbjct: 426 LVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIF 484



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 194/398 (48%), Gaps = 36/398 (9%)

Query: 92  LQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
           L LF+V P+  ++  + L++ ++K   L  AR +F+ +P +N  ++N+M+  Y  +    
Sbjct: 50  LILFSVTPE--NYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHG 107

Query: 152 EAVRLFKEL-NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
           +A+ LF  L +S+LV  +     + +    +   L+ ++ GK++H  +L  G D D  + 
Sbjct: 108 DALDLFSSLASSNLVNNISITCLLKSL---SSFTLSDVKLGKEVHGFVLRTGFDADVFVE 164

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           ++L+  Y KC D + + +V + M + D    +++ISGY+  G   D + ++    D    
Sbjct: 165 NALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVD---- 220

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
                                F   R NGV     T+ SVL AC     L  G +VH   
Sbjct: 221 ---------------------FSGFRPNGV-----TVVSVLQACGQTQDLAFGMEVHKFI 254

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
               V  D+ V +AL+  Y+K G    A +LF E+   D +    +I+     G ++ + 
Sbjct: 255 VDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSL 314

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
            +FR M  + L +WN++I GL QN      LDL   M  L  R +  +L+SV+S  A  S
Sbjct: 315 ELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFS 374

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           SL+ G+++ +    IG   +  ++T+++D Y K G+++
Sbjct: 375 SLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLR 412



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 203/497 (40%), Gaps = 127/497 (25%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           + +GK++H   L+ G  ++ + + N L+  Y +C +   +  +FD M +R+  SWN+MI 
Sbjct: 142 VKLGKEVHGFVLRTG-FDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMIS 200

Query: 81  GFMKLGHKEKSLQLFNVM--------------------PQKNDFSWNM------------ 108
           G+ + G  E    L+  M                     Q  D ++ M            
Sbjct: 201 GYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVE 260

Query: 109 --------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
                   LI  +AK G L  AR LF++M  ++ + + ++I   + +G+  +++ LF+ +
Sbjct: 261 IDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGM 320

Query: 161 NS-----------------------DLVERLQC-----DAFILATVIGACADLAALEYGK 192
            +                       DLV  +Q      +A  L++V+   A  ++L+ GK
Sbjct: 321 KTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGK 380

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           +IHS+ +  G   +  + ++++++Y K G    A +V +  K+      +A+IS YA  G
Sbjct: 381 EIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHG 440

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
             N                                AL LFH+M + G+  D  T  +VL+
Sbjct: 441 DAN-------------------------------LALGLFHEMLKQGIQPDPVTFTAVLA 469

Query: 313 ACSSLG------------FLEHGKQ--VHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           AC+  G            F ++G Q  V  +AC VG +      S   +  SK  MP + 
Sbjct: 470 ACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSK--MPIEP 527

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG--LSQNGS 416
                  KV+  +L    I+     G+     ++F   P     + N +I+    SQ G 
Sbjct: 528 SA-----KVWGALLHGASISSDVELGK-SVCDYLFEIEPEN---TGNYVIMANLYSQAGR 578

Query: 417 PIEALDLFCNMNKLDLR 433
             EA ++   MNK+ L+
Sbjct: 579 WKEADEVRERMNKVGLQ 595



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 64/297 (21%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            KQ+H+ +++  +  ++ L S LV LY K      A                        
Sbjct: 43  AKQLHARLILFSVTPENYLASKLVALYSKTNHLAFA------------------------ 78

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
                  R VFD+    ++  +N+M+  Y  +N   +AL LF  +  + ++ + S +  +
Sbjct: 79  -------RYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLVNNIS-ITCL 130

Query: 311 LSACSS--LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
           L + SS  L  ++ GK+VHG   + G   DV V +AL+  YSK      + K+F  +   
Sbjct: 131 LKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKR 190

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           D +  N+MI+ YS  G  ED K ++R M + S         G   NG             
Sbjct: 191 DVVSWNSMISGYSQGGLYEDCKTLYREMVDFS---------GFRPNG------------- 228

Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
                    ++ SV+ AC     L  G +V   +    ++ D  +  +L+  Y KCG
Sbjct: 229 --------VTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCG 277



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 34/194 (17%)

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           H++  +    D      +L   + L      KQ+H       V  +  +AS L+  YSK 
Sbjct: 13  HRLLTSAAGLDCGIYGHLLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSK- 71

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                                            +  A+++F  +P+K+  S+N+M++  S
Sbjct: 72  ------------------------------TNHLAFARYVFDQIPHKNTFSYNAMLISYS 101

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN--ISSLELGEQVFARVTIIGLDSD 470
            +    +ALDLF ++   +L ++  S+  ++ + ++  +S ++LG++V   V   G D+D
Sbjct: 102 LHNRHGDALDLFSSLASSNL-VNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDAD 160

Query: 471 QIISTSLVDFYCKC 484
             +  +L+ +Y KC
Sbjct: 161 VFVENALITYYSKC 174


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 174/361 (48%), Gaps = 38/361 (10%)

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
           F+ N ++  +  LG    + +LF  +P++N  SWN+L  G+ K G+L  AR LF++MP R
Sbjct: 143 FTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPER 202

Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
           N   WN+M+      GF  E++  F ++     E +  D F L +V   CA L  +  G+
Sbjct: 203 NVATWNAMVAGLTNLGFDEESLGFFLDMRR---EGMHPDEFGLGSVFRCCAGLRDVVTGR 259

Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
           Q+H++++ +GLD D  +GSSL ++Y +CG       VL M+                   
Sbjct: 260 QVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPS----------------- 302

Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
                          S V  N++I+G   N +   AL  F  MR  GV  D  T  S +S
Sbjct: 303 --------------LSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAIS 348

Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
           +CS L  L  G+Q+HG   K GV   V V + L+  YS+ G   D+ ++F      DT L
Sbjct: 349 SCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFL 408

Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
           L+ MI+ Y   G  + A  +F+ M N     S +++ +++   S +G   E +D F  M 
Sbjct: 409 LSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMT 468

Query: 429 K 429
           K
Sbjct: 469 K 469



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 34/314 (10%)

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
           A + + +  AC  L  L   +Q+H+    +G   D    + L+  Y   GD  +A ++  
Sbjct: 110 ARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFE 166

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            +   +    + L  GY   G +  AR++FD   + +   WN+M++G  +   D E+L  
Sbjct: 167 RIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 226

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           F  MRR G+  D   L SV   C+ L  +  G+QVH +  + G+  D+ V S+L   Y +
Sbjct: 227 FLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR 286

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
                                          CG +++ + + R +P+ S++S N++I G 
Sbjct: 287 -------------------------------CGCLQEGEAVLRMLPSLSIVSCNTIIAGR 315

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
           +QNG    AL+ FC M  + +  D  +  S IS+C+++++L  G+Q+  +V   G+D   
Sbjct: 316 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVV 375

Query: 472 IISTSLVDFYCKCG 485
            + T LV  Y +CG
Sbjct: 376 PVMTCLVHMYSRCG 389



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 298 NGVL-EDASTLAS-VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
            GVL  DA+ L S +  AC +L  L   +Q+H  A   G   D   A+ L+  Y+  G  
Sbjct: 102 RGVLWSDAARLFSHLFRACRALRPL---RQLHAFAATSGAATDRFTANHLMLAYADLGDL 158

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
           + A +LF  +   + +  N +   Y   G +  A+ +F  MP +++ +WN+M+ GL+  G
Sbjct: 159 TAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLG 218

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              E+L  F +M +  +  D+F L SV   CA +  +  G QV A V   GLD D  + +
Sbjct: 219 FDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGS 278

Query: 476 SLVDFYCKCGFIKMDEYYL 494
           SL   Y +CG ++  E  L
Sbjct: 279 SLAHMYMRCGCLQEGEAVL 297



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           + SC+   ++  G+Q+H   +K G+ +  +P+   L+ MY RCG   D+  +F      +
Sbjct: 347 ISSCSDLAALAQGQQIHGQVMKAGV-DKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSD 405

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFN 127
            F  +AMI  +   GH +K+++LF  M     + +D ++  L+   + +G  +     F 
Sbjct: 406 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFE 465

Query: 128 DMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
            M +   +      +  ++    R+G   EA  L       L   L  D  I  T++ AC
Sbjct: 466 LMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALI------LSMPLTPDGVIWKTLLSAC 519

Query: 183 ADLAALEYGKQIHSHIL-VNGLDFDS-VLGSSLVNLYGKCGDFNSANQVL---NMMKEP 236
                 +  ++I   ++ ++  D  S VL S++     + GD +   + +   N+ KEP
Sbjct: 520 KTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEP 578



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 127/324 (39%), Gaps = 59/324 (18%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  + + C     +  G+Q+H + ++ G L+  + + + L  MYMRCG   +   +   +
Sbjct: 242 LGSVFRCCAGLRDVVTGRQVHAYVVRSG-LDRDMCVGSSLAHMYMRCGCLQEGEAVLRML 300

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
           P  +  S N +I G  + G  E +L+ F +M       +  ++   IS  +    L   +
Sbjct: 301 PSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQ 360

Query: 124 TLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            +   + +    +       ++H Y R G   ++ R+F             D F+L+ +I
Sbjct: 361 QIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVF-------FGYCGSDTFLLSAMI 413

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
            A        YG   H H            G   + L+          Q++N   EP D 
Sbjct: 414 SA--------YG--FHGH------------GQKAIELF---------KQMMNGGAEPSDV 442

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNN---EDTEALLLF 292
              AL+   ++ G   +    F+  T T     SV   + +   +  +   ++ EAL+L 
Sbjct: 443 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 502

Query: 293 HKMRRNGVLEDASTLASVLSACSS 316
             +  +GV+       ++LSAC +
Sbjct: 503 MPLTPDGVI-----WKTLLSACKT 521


>gi|255559192|ref|XP_002520617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540178|gb|EEF41753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 344

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 180/344 (52%), Gaps = 34/344 (9%)

Query: 85  LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
           L  K+   Q+  +  ++++   N L++ + K G L+ A  LF +MP+R+ ++W S++  Y
Sbjct: 20  LTAKKLHAQIIKLSLKESEPLPNTLLNAYGKCGLLQDAYFLFEEMPQRDHVSWASILTAY 79

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
                  + + +F  +   +V++L+ D F+ AT++ ACA L A+  GKQ+H+  +++   
Sbjct: 80  NLANLPNKTLSIFPTMF--IVDKLEPDHFVYATLVKACASLCAVRQGKQVHARFVLSPFS 137

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
            D V+ SSL+++Y KCG    A  V + +   +    +A+ISGYA  G   +A  +F   
Sbjct: 138 DDDVVKSSLIDMYAKCGLPKIARAVFDSILAKNAVSWTAMISGYAKSGLKVEAMELFSSF 197

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHG 323
              +   W ++ISG + + +  +   LF +MRR G+ + D   L+SV+ AC++L  LE G
Sbjct: 198 PVKNLYSWTALISGLVQSGKGIDGCYLFLEMRREGIDIIDPLVLSSVVGACANLAVLEFG 257

Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
           KQ+HG    +G    + +++AL+D Y+K                               C
Sbjct: 258 KQLHGLIIALGYESCLFISNALVDMYAK-------------------------------C 286

Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
             I  AK IF  M  K ++SW S+IVG +Q+G   EALDL+ +M
Sbjct: 287 SDILAAKEIFDRMIYKDVVSWTSIIVGAAQHGRAKEALDLYDDM 330



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 138/260 (53%), Gaps = 4/260 (1%)

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
           Q++ +  +  +   + L++ Y  CG + DA  +F+       V W S+++ Y   N   +
Sbjct: 28  QIIKLSLKESEPLPNTLLNAYGKCGLLQDAYFLFEEMPQRDHVSWASILTAYNLANLPNK 87

Query: 288 ALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            L +F  M     LE D    A+++ AC+SL  +  GKQVH         DD +V S+L+
Sbjct: 88  TLSIFPTMFIVDKLEPDHFVYATLVKACASLCAVRQGKQVHARFVLSPFSDDDVVKSSLI 147

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
           D Y+K G+P  A  +F  +   + +    MI+ Y+  G   +A  +F + P K+L SW +
Sbjct: 148 DMYAKCGLPKIARAVFDSILAKNAVSWTAMISGYAKSGLKVEAMELFSSFPVKNLYSWTA 207

Query: 407 MIVGLSQNGSPIEALDLFCNMNK--LDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
           +I GL Q+G  I+   LF  M +  +D+ +D   L+SV+ ACAN++ LE G+Q+   +  
Sbjct: 208 LISGLVQSGKGIDGCYLFLEMRREGIDI-IDPLVLSSVVGACANLAVLEFGKQLHGLIIA 266

Query: 465 IGLDSDQIISTSLVDFYCKC 484
           +G +S   IS +LVD Y KC
Sbjct: 267 LGYESCLFISNALVDMYAKC 286



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 133/254 (52%), Gaps = 34/254 (13%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A L+++C +  ++  GKQ+H  F+     +  + + + L+ MY +CG P  A  +FD + 
Sbjct: 109 ATLVKACASLCAVRQGKQVHARFVLSPFSDDDV-VKSSLIDMYAKCGLPKIARAVFDSIL 167

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFND 128
            +N  SW AMI G+ K G K ++++LF+  P KN +SW  LISG  ++G+      LF +
Sbjct: 168 AKNAVSWTAMISGYAKSGLKVEAMELFSSFPVKNLYSWTALISGLVQSGKGIDGCYLFLE 227

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
           M RR  I                           D++     D  +L++V+GACA+LA L
Sbjct: 228 M-RREGI---------------------------DII-----DPLVLSSVVGACANLAVL 254

Query: 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGY 248
           E+GKQ+H  I+  G +    + ++LV++Y KC D  +A ++ + M   D    +++I G 
Sbjct: 255 EFGKQLHGLIIALGYESCLFISNALVDMYAKCSDILAAKEIFDRMIYKDVVSWTSIIVGA 314

Query: 249 ANCGKMNDARRVFD 262
           A  G+  +A  ++D
Sbjct: 315 AQHGRAKEALDLYD 328



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 7/145 (4%)

Query: 351 KRGMPSDACKLFSE-----LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           KR  P  A KL ++     LK  +  L NT++  Y  CG ++DA  +F  MP +  +SW 
Sbjct: 15  KRQTPLTAKKLHAQIIKLSLKESEP-LPNTLLNAYGKCGLLQDAYFLFEEMPQRDHVSWA 73

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTI 464
           S++   +    P + L +F  M  +D L  D F  A+++ ACA++ ++  G+QV AR  +
Sbjct: 74  SILTAYNLANLPNKTLSIFPTMFIVDKLEPDHFVYATLVKACASLCAVRQGKQVHARFVL 133

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKM 489
                D ++ +SL+D Y KCG  K+
Sbjct: 134 SPFSDDDVVKSSLIDMYAKCGLPKI 158


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/527 (25%), Positives = 237/527 (44%), Gaps = 113/527 (21%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
           +DY+ +L+QS      ++ GK +H H +K       L + N LL MY +CG+   A  LF
Sbjct: 60  VDYV-KLVQSATKTGKLNHGKLVHSHMIKTS-FRPCLFLQNNLLNMYCKCGDTRSADKLF 117

Query: 65  DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN-------------------VMPQKNDFS 105
           D+M + N  ++N++I G++++ + +K + LF+                      Q  + S
Sbjct: 118 DKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLS 177

Query: 106 WNMLISG--------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
              +I G                    ++K G++  AR LF+   + + ++WNS+I  YV
Sbjct: 178 AGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYV 237

Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL--AALEYGKQIHSHILVNGL 203
           +NG   E + + ++++ +    L  + + L + + AC+        +G  +H H +  GL
Sbjct: 238 QNGKYEELLTILQKMHQN---GLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGL 294

Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
             D V+G++L+++Y K                                G ++DA ++FD+
Sbjct: 295 HLDVVVGTALLDMYAKT-------------------------------GSLDDAIQIFDQ 323

Query: 264 TTDTSSVMWNSMISGYISNN--EDT---EALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
             D + VM+N+M++G +     ED    +AL LF +M+  G+     T +S+L AC  + 
Sbjct: 324 MVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVE 383

Query: 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMIT 378
             +  KQVH   CK G++ D  + S L+D                               
Sbjct: 384 DFKFAKQVHALMCKNGLLSDEYIGSILID------------------------------- 412

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +YS  G + DA   F ++ N +++   +MI G  QNG    AL LF  +   + + D+F 
Sbjct: 413 LYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFI 472

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++++S+CAN+  L  GEQ+    T +G+    I   S +  Y K G
Sbjct: 473 XSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSG 519



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 211/498 (42%), Gaps = 114/498 (22%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A  L +C+   ++  GK +H   L  G L S + + N L+ MY +CG    A +LFD   
Sbjct: 164 AGALTACSQSGNLSAGKMIHGLILVYG-LGSQVVLTNSLIDMYSKCGQVDYARILFDHSD 222

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG---------------- 112
           + +  SWN++I G+++ G  E+ L +   M Q N  ++N    G                
Sbjct: 223 KLDGVSWNSLIAGYVQNGKYEELLTILQKMHQ-NGLAFNTYTLGSALKACSSNFNGCKMF 281

Query: 113 --------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMI----- 141
                                     +AK G L  A  +F+ M  +N + +N+M+     
Sbjct: 282 GTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQ 341

Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
              + +  A +A+ LF E+ S  ++      F  ++++ AC  +   ++ KQ+H+ +  N
Sbjct: 342 QETIEDKCAYKALNLFFEMKSCGIKP---SMFTYSSLLKACIIVEDFKFAKQVHALMCKN 398

Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
           GL  D  +GS L++L                               Y+  G M DA   F
Sbjct: 399 GLLSDEYIGSILIDL-------------------------------YSVLGSMMDALLCF 427

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
           +   + + V   +MI GY+ N E   AL LF+++       D    ++++S+C+++G L 
Sbjct: 428 NSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCANMGMLR 487

Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
            G+Q+ GHA KVG+                           S      TI  N+ I +Y+
Sbjct: 488 SGEQIQGHATKVGI---------------------------SRF----TIFQNSQIWMYA 516

Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
             G +  A   F+ M N  ++SW++MI   +Q+G  +EAL  F  M    +  + F+   
Sbjct: 517 KSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLG 576

Query: 442 VISACANISSLELGEQVF 459
           V+ AC++   +E G + F
Sbjct: 577 VLIACSHRGLVEEGLRYF 594



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 135/287 (47%), Gaps = 37/287 (12%)

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRV 260
            +SV    LV    K G  N    V + M +    P  F  + L++ Y  CG    A ++
Sbjct: 57  LESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKL 116

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD+ + ++ V +NS+ISGY+  +   + ++LF K RR G+  D  T A  L+ACS  G L
Sbjct: 117 FDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNL 176

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             GK +HG     G+   V++ ++L+D YSK                             
Sbjct: 177 SAGKMIHGLILVYGLGSQVVLTNSLIDMYSK----------------------------- 207

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
             CG+++ A+ +F        +SWNS+I G  QNG   E L +   M++  L  + ++L 
Sbjct: 208 --CGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLG 265

Query: 441 SVISAC-ANISSLEL-GEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           S + AC +N +  ++ G  +      +GL  D ++ T+L+D Y K G
Sbjct: 266 SALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTG 312


>gi|297720781|ref|NP_001172752.1| Os01g0959600 [Oryza sativa Japonica Group]
 gi|255674093|dbj|BAH91482.1| Os01g0959600 [Oryza sativa Japonica Group]
          Length = 542

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 213/494 (43%), Gaps = 112/494 (22%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           ++L + N LL  Y R G P  A  L DEMPRRN  S+N +I+ + + G    SL+     
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 99  PQK----NDFSW-----------------------------------NMLISGFAKAGEL 119
            +     + FS+                                   N L+S ++K GE+
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             AR +F+    R+ ++WNS++  YVR G   E VR+F  +       +  ++F L +VI
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRG---GMGLNSFALGSVI 217

Query: 180 GACADL--AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
             C+      ++  + +H  ++  GLD D  L S+++++Y K G    A  +   ++EP+
Sbjct: 218 KCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY------ISNNEDTEALLL 291
                                           VM+N+MI+G+      I     +EAL L
Sbjct: 278 -------------------------------VVMFNTMIAGFCRTETVIGKEVASEALTL 306

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           + +++  G+     T +SVL AC+  G+LE GKQ+HG   K    +D  + SAL+D Y  
Sbjct: 307 YSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN 366

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G                                +ED    FR+ P   +++W +M+ G 
Sbjct: 367 SGC-------------------------------MEDGFRCFRSSPKHDIVTWTAMVSGC 395

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            QN    +AL LF       L+ D F+++SV++ACA+++    GEQ+    T  G D   
Sbjct: 396 VQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFT 455

Query: 472 IISTSLVDFYCKCG 485
           ++  S V  Y + G
Sbjct: 456 VMGNSCVHMYARSG 469



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 202/460 (43%), Gaps = 90/460 (19%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C+    +  G+ +H   +  G L+S + ++N L+ MY +CG   +A  +FD    R+  S
Sbjct: 119 CSRAGHLRAGRAVHALAILDG-LSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVS 177

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLI---SG--------------- 112
           WN+++ G+++ G +E+ +++F +M +     N F+   +I   SG               
Sbjct: 178 WNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGC 237

Query: 113 -------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG----- 148
                              +AK G L  A  LF  +   N + +N+MI  + R       
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297

Query: 149 -FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
             A EA+ L+ E+ S     +Q   F  ++V+ AC     LE+GKQIH            
Sbjct: 298 EVASEALTLYSEVQS---RGMQPTEFTFSSVLRACNLAGYLEFGKQIH------------ 342

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                               QV+    + DDF  SALI  Y N G M D  R F  +   
Sbjct: 343 -------------------GQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKH 383

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W +M+SG + N    +AL LFH+    G+  D  T++SV++AC+SL     G+Q+ 
Sbjct: 384 DIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQ 443

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             A K G     ++ ++ +  Y++ G    A + F E++ +D +  + +I+ ++  G   
Sbjct: 444 CFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCAR 503

Query: 388 DAKHIF------RTMPNKSLISWNSMIVGLSQNGSPIEAL 421
           DA H F      + +PN+  I++  ++   S  G   E L
Sbjct: 504 DALHFFDEMVDAKVVPNE--ITFLGVLTACSHGGLVDEGL 541



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 34/176 (19%)

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L AC+SL                               ++       A  LF       
Sbjct: 17  LLRACTSL-------------------------RHAAAVHAHIARAHPAASLF------- 44

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             L NT++  Y   G    A+ +   MP ++ +S+N +I   S+ G    +L+      +
Sbjct: 45  --LRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARR 102

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             + +D+FS A+ ++AC+    L  G  V A   + GL S   +S SLV  Y KCG
Sbjct: 103 AGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 213/494 (43%), Gaps = 112/494 (22%)

Query: 39  STLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98
           ++L + N LL  Y R G P  A  L DEMPRRN  S+N +I+ + + G    SL+     
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 99  PQK----NDFSW-----------------------------------NMLISGFAKAGEL 119
            +     + FS+                                   N L+S ++K GE+
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
             AR +F+    R+ ++WNS++  YVR G   E VR+F  +       +  ++F L +VI
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRG---GMGLNSFALGSVI 217

Query: 180 GACADL--AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
             C+      ++  + +H  ++  GLD D  L S+++++Y K G    A  +   ++EP+
Sbjct: 218 KCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY------ISNNEDTEALLL 291
                                           VM+N+MI+G+      I     +EAL L
Sbjct: 278 -------------------------------VVMFNTMIAGFCRTETVIGKEVASEALTL 306

Query: 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
           + +++  G+     T +SVL AC+  G+LE GKQ+HG   K    +D  + SAL+D Y  
Sbjct: 307 YSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN 366

Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
            G                                +ED    FR+ P   +++W +M+ G 
Sbjct: 367 SGC-------------------------------MEDGFRCFRSSPKHDIVTWTAMVSGC 395

Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471
            QN    +AL LF       L+ D F+++SV++ACA+++    GEQ+    T  G D   
Sbjct: 396 VQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFT 455

Query: 472 IISTSLVDFYCKCG 485
           ++  S V  Y + G
Sbjct: 456 VMGNSCVHMYARSG 469



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 213/491 (43%), Gaps = 96/491 (19%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C+    +  G+ +H   +  G L+S + ++N L+ MY +CG   +A  +FD    R+  S
Sbjct: 119 CSRAGHLRAGRAVHALAILDG-LSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVS 177

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLI---SG--------------- 112
           WN+++ G+++ G +E+ +++F +M +     N F+   +I   SG               
Sbjct: 178 WNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGC 237

Query: 113 -------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG----- 148
                              +AK G L  A  LF  +   N + +N+MI  + R       
Sbjct: 238 VIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGK 297

Query: 149 -FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
             A EA+ L+ E+ S     +Q   F  ++V+ AC     LE+GKQIH            
Sbjct: 298 EVASEALTLYSEVQS---RGMQPTEFTFSSVLRACNLAGYLEFGKQIH------------ 342

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                               QV+    + DDF  SALI  Y N G M D  R F  +   
Sbjct: 343 -------------------GQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKH 383

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
             V W +M+SG + N    +AL LFH+    G+  D  T++SV++AC+SL     G+Q+ 
Sbjct: 384 DIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQ 443

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             A K G     ++ ++ +  Y++ G    A + F E++ +D +  + +I+ ++  G   
Sbjct: 444 CFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCAR 503

Query: 388 DAKHIF------RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
           DA H F      + +PN+  I++  ++   S  G   E L  +  MNK       + L+ 
Sbjct: 504 DALHFFDEMVDAKVVPNE--ITFLGVLTACSHGGLVDEGLRYYETMNK------DYGLSP 555

Query: 442 VISACANISSL 452
            I  C  +  L
Sbjct: 556 TIKHCTCVVDL 566



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 34/176 (19%)

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369
           +L AC+SL                               ++       A  LF       
Sbjct: 17  LLRACTSL-------------------------RHAAAVHAHIARAHPAASLF------- 44

Query: 370 TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429
             L NT++  Y   G    A+ +   MP ++ +S+N +I   S+ G    +L+      +
Sbjct: 45  --LRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARR 102

Query: 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
             + +D+FS A+ ++AC+    L  G  V A   + GL S   +S SLV  Y KCG
Sbjct: 103 AGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 241/514 (46%), Gaps = 105/514 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +++ C   +++ +GK +    L+ G  +  + +A+ L+++Y   G   DA   FD+M  +
Sbjct: 16  VIKCCTGLNNVRLGKVIQDMILEMG-FDLDMFVASSLIKLYADNGCIEDARRFFDKMIDK 74

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------------- 105
           +C  WN MI G+++ G  + +++LF  M      P    F+                   
Sbjct: 75  DCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLH 134

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          N L++ ++K  +L  AR LF+ MP+ + + WN MI  YV+NGF  
Sbjct: 135 GLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMD 194

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A  LF E+ S     ++ D+    + + + A+ ++L+  K+IH +I+ +G+  D  L S
Sbjct: 195 DASMLFNEMIS---AGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNS 251

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L++LY KC D   A ++ N+  + D    +A+ISG                        
Sbjct: 252 ALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISG------------------------ 287

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
                  Y+ N  + +AL +F  + +  ++ +A T +S+L AC+ L  ++ G+++HG+  
Sbjct: 288 -------YVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYII 340

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  + +   V SA+++ Y+K G    A  +F  + + D I  N++IT +S  G+ E+A +
Sbjct: 341 KNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIY 400

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +FR M  +                                ++ D  ++++ +SACANI +
Sbjct: 401 LFRQMGMEG-------------------------------VKYDCVTVSAALSACANIPA 429

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           L  G+++   +     +SD    ++L++ Y KCG
Sbjct: 430 LHYGKEIHGFMIKGAFESDLFDMSALINMYAKCG 463



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 220/482 (45%), Gaps = 105/482 (21%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +  G+QLH   ++ G L+    + N L+ +Y +     DA  LFD MP+ +   WN MI 
Sbjct: 127 VEYGRQLHGLVVRSG-LDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIG 185

Query: 81  GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR------------- 123
           G+++ G  + +  LFN M     + +  ++   +   A++  LK  +             
Sbjct: 186 GYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVIL 245

Query: 124 ----------------------TLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
                                  +FN   + + + + +MI  YV NG  ++A+ +F+ L 
Sbjct: 246 DVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWL- 304

Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
             L +++  +A   ++++ ACA LAA++ G+++H +I+ N L+    +GS+++N+Y K  
Sbjct: 305 --LQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAK-- 360

Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
                                        CG+++ A  +F R +   ++ WNS+I+ +  
Sbjct: 361 -----------------------------CGRLDLAHLIFGRISIKDAICWNSIITSFSQ 391

Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
           + +  EA+ LF +M   GV  D  T+++ LSAC+++  L +GK++HG   K     D+  
Sbjct: 392 DGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFD 451

Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
            SAL                               I +Y+ CG++  A+ +F  M  K+ 
Sbjct: 452 MSAL-------------------------------INMYAKCGKLNIARLVFNLMQEKNE 480

Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
           ++WNS+I     +G   ++L LF NM +  ++ D  +  +++S+C +   +E G + F  
Sbjct: 481 VAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRC 540

Query: 462 VT 463
           +T
Sbjct: 541 MT 542



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 31/185 (16%)

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           GV  D  T   V+  C+ L  +  GK +     ++G   D+ VAS+L+  Y+  G   DA
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
            + F ++   D +L N MI  Y  CG  + A  +F+ M              +S    P 
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDM--------------MSSEAKP- 109

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
                           D  + A V+S   + + +E G Q+   V   GLD   ++  +LV
Sbjct: 110 ----------------DSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLV 153

Query: 479 DFYCK 483
             Y K
Sbjct: 154 TVYSK 158


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 216/491 (43%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C +   +  G QLH +  K GI +S   +   LL +Y++CG+   AL++F+  
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGI-SSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ--------------------- 100
            R N   WN M+  F ++    KS +LF       + P                      
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K  F  +M +SG     ++K G L+ AR +   +  ++ ++W SMI  YV++ 
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             ++A+  FKE+    +     D   LA+ I  CA + A+  G QIH+ I V+G   D  
Sbjct: 426 CCKDALAAFKEMQKCGI---WPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LVNLY                               A CG++ +A   F+      
Sbjct: 483 IWNALVNLY-------------------------------ARCGRIREAFSSFEEIEHKD 511

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + WN ++SG+  +    EAL +F +M ++GV  +  T  S LSA ++L  ++ GKQ+H 
Sbjct: 512 EITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHA 571

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V +AL+  Y K G   DA   FSE+   + +  NT+IT   SC     
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT---SC----- 623

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                  SQ+G  +EALDLF  M K  ++ +  +   V++AC++
Sbjct: 624 -----------------------SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH 660

Query: 449 ISSLELGEQVF 459
           +  +E G   F
Sbjct: 661 VGLVEEGLSYF 671



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 223/517 (43%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L SC        G+ +H    K G   S + + N ++ +Y+RCG+   A  +F +M
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ--------------------- 100
           P R+  ++N +I G  + GH E +L++F  M      P                      
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K   S + ++ G     + K G+++TA  +FN   R N + WN M+  + +  
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              ++  LF ++ +  +   Q   F    ++  C     ++ G+QIHS  +  G + D  
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQ---FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +   L+++Y K                                G +  ARRV +   +  
Sbjct: 382 VSGVLIDMYSKY-------------------------------GWLEKARRVLEMLKEKD 410

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W SMI+GY+ +    +AL  F +M++ G+  D   LAS +S C+ +  +  G Q+H 
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIH- 469

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                        A   +  YS                  D  + N ++ +Y+ CGRI +
Sbjct: 470 -------------ARIYVSGYSG-----------------DVSIWNALVNLYARCGRIRE 499

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  + +K  I+WN ++ G +Q+G   EAL +F  M++  ++ + F+  S +SA AN
Sbjct: 500 AFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASAN 559

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ ++ G+Q+ ARV   G   +  +  +L+  Y KCG
Sbjct: 560 LAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCG 596



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 219/506 (43%), Gaps = 105/506 (20%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            V  ++H   + +G L     + N L+ +Y + G    A  +F+E+  R+  SW AM+ G
Sbjct: 59  QVVPEIHAKAVTRG-LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 82  FMKLGHKEKSLQLFNVMPQ---------------------------------------KN 102
           + + G  E++L L+  M +                                         
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F  N +I+ + + G  + A  +F DMP R+ + +N++I  + + G    A+ +F+E+  
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQ- 236

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                L  D   +++++ ACA L  L+ G Q+HS++   G+  D ++  SL++LY KCGD
Sbjct: 237 --FSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
             +                 AL+              +F+ +  T+ V+WN M+  +   
Sbjct: 295 VET-----------------ALV--------------IFNSSDRTNVVLWNLMLVAFGQI 323

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
           N+  ++  LF +M+  G+  +  T   +L  C+    ++ G+Q+H  + K G   D+ V+
Sbjct: 324 NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
             L+D YSK G    A ++   LK  D                               ++
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKD-------------------------------VV 412

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW SMI G  Q+    +AL  F  M K  +  D   LAS IS CA I+++  G Q+ AR+
Sbjct: 413 SWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI 472

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIK 488
            + G   D  I  +LV+ Y +CG I+
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIR 498



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 194/435 (44%), Gaps = 80/435 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I +G+Q+H   +K G   S + ++  L+ MY + G    A  + + +  +
Sbjct: 351 ILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-------------------------NVMPQ----- 100
           +  SW +MI G+++    + +L  F                         N M Q     
Sbjct: 410 DVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIH 469

Query: 101 --------KNDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     D S WN L++ +A+ G ++ A + F ++  ++ I WN ++  + ++G   
Sbjct: 470 ARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHE 529

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+++F  ++   V+    + F   + + A A+LA ++ GKQIH+ ++  G  F++ +G+
Sbjct: 530 EALKVFMRMDQSGVKH---NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN 586

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L++LYGKCG F                                DA+  F   ++ + V 
Sbjct: 587 ALISLYGKCGSF-------------------------------EDAKMEFSEMSERNEVS 615

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHA 330
           WN++I+    +    EAL LF +M++ G+  +  T   VL+ACS +G +E G       +
Sbjct: 616 WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIE-- 387
            + G+       + ++D + + G    A K   E+ +  D ++  T+++       IE  
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVG 735

Query: 388 --DAKHIFRTMPNKS 400
              AKH+    P+ S
Sbjct: 736 EFAAKHLLELEPHDS 750



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  +  C   +++  G Q+H      G  +  + I N L+ +Y RCG   +A   F+E+
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEI 507

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             ++  +WN ++ GF + G  E++L++F  M Q     N F++                 
Sbjct: 508 EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGK 567

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LIS + K G  + A+  F++M  RN ++WN++I    ++G
Sbjct: 568 QIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLDFDS 207
              EA+ LF ++     E ++ +      V+ AC+ +  +E G     S     G+    
Sbjct: 628 RGLEALDLFDQMKK---EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMM 233
              + +++++G+ G  + A + +  M
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEM 710



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           I+ N +I +YS  G +  A+ +F  +  +  +SW +M+ G +QNG   EAL L+  M++ 
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
            +    + L+SV+S+C        G  + A+    G  S+  +  +++  Y +CG  ++ 
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 491 E 491
           E
Sbjct: 198 E 198


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 219/502 (43%), Gaps = 112/502 (22%)

Query: 13  QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
           ++C+   ++   + +H H +K     + L +   ++ MY++C     A  LF  MP R+ 
Sbjct: 62  KACSKLLNLKYSQIVHTHVVKSR-FQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDV 120

Query: 73  FSWNAMIEGFMKLGHKEKSLQLFNVMPQK------------------------------- 101
            SWN+MI GF +LG  ++ + LF  M  +                               
Sbjct: 121 ASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180

Query: 102 -------NDFSW-NMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAR 151
                   D S  N  I+ +AK GE   A T+F+ + +  +  ++WNSMI  Y       
Sbjct: 181 GIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCS 240

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +AV  FK++   L    + D   + +++ +C     L +GK IH+H +  G D D     
Sbjct: 241 KAVGFFKKM---LXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDI---- 293

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
                           QV+N            LIS Y+ CG +  AR +FD     + V 
Sbjct: 294 ----------------QVIN-----------TLISMYSKCGDIGSARYLFDNMLGKTRVS 326

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           W +MI+G     +  EA+ LF  M   G   D  T+ S++S C   G LE GK +  +A 
Sbjct: 327 WTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYAT 386

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
             G+ D+++V +AL+D                               VY+ CG +++A+ 
Sbjct: 387 ANGLKDNLMVCNALID-------------------------------VYAKCGSMDNARE 415

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F TMP KSL+SW ++I G + NG   EAL LF  M +L L+ +  +  +V+ AC +   
Sbjct: 416 LFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGF 475

Query: 452 LELGEQVFARVTII-----GLD 468
           LE G + F  +T +     GLD
Sbjct: 476 LEKGWECFNLMTKVYKINPGLD 497



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/441 (27%), Positives = 194/441 (43%), Gaps = 75/441 (17%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--------QKNDFSW 106
           G    ALLLF +M +      N       K   K  +L+   ++         Q + F  
Sbjct: 33  GYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQ 92

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             ++  + K  +L  A  LF+ MP R+  +WNSMI  + + GF    V LF E+    +E
Sbjct: 93  TSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMG---IE 149

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            ++ D+  +  +  +   L  L+  + IHS  +  G+D D     S+ N +         
Sbjct: 150 GIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDV----SVSNTW--------- 196

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNE 284
                             I+ YA CG+   A  VFD       + V WNSMI+GY    +
Sbjct: 197 ------------------IAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQ 238

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
            ++A+  F KM   G   D ST+ S+LS+C     L HGK +H H  +VG   D+ V   
Sbjct: 239 CSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQV--- 295

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
                                       +NT+I++YS CG I  A+++F  M  K+ +SW
Sbjct: 296 ----------------------------INTLISMYSKCGDIGSARYLFDNMLGKTRVSW 327

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            +MI G ++ G   EA+ LF  M  +  + D  ++ S++S C    +LELG+ +    T 
Sbjct: 328 TAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATA 387

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
            GL  + ++  +L+D Y KCG
Sbjct: 388 NGLKDNLMVCNALIDVYAKCG 408



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)

Query: 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS 196
           WNS I   V  G+A +A+ LF+++  +    L+ +     +V  AC+ L  L+Y + +H+
Sbjct: 22  WNSSITESVNQGYAHKALLLFRQMKQN---GLEPNNLTFPSVAKACSKLLNLKYSQIVHT 78

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
           H++ +    D  + +S+V++Y K                               C ++  
Sbjct: 79  HVVKSRFQADLFVQTSVVDMYVK-------------------------------CSQLGF 107

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A  +F R        WNSMI G+         + LF +M   G+  D+ T+  +  +  S
Sbjct: 108 AYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALS 167

Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
           L  L+  + +H    K+G+  DV V+                               NT 
Sbjct: 168 LKDLKMLESIHSFGIKIGIDTDVSVS-------------------------------NTW 196

Query: 377 ITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434
           I  Y+ CG    A+ +F  +    K+ +SWNSMI G +      +A+  F  M     R 
Sbjct: 197 IAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRA 256

Query: 435 DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           D  ++ S++S+C     L  G+ + A    +G DSD  +  +L+  Y KCG I    Y
Sbjct: 257 DLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARY 314



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 32/236 (13%)

Query: 257 ARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
           A + F+R ++  +V  WNS I+  ++     +ALLLF +M++NG+  +  T  SV  ACS
Sbjct: 6   ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65

Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
            L  L++ + VH H  K     D+ V ++++D Y K                        
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVK------------------------ 101

Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
                  C ++  A ++F  MP + + SWNSMI G +Q G     + LFC M    +R D
Sbjct: 102 -------CSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRAD 154

Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             ++  +  +  ++  L++ E + +    IG+D+D  +S + +  Y KCG   + E
Sbjct: 155 SVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAE 210



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 117/269 (43%), Gaps = 55/269 (20%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK +H H ++ G  +S + + N L+ MY +CG+   A  LFD M  +   SW AMI G  
Sbjct: 277 GKLIHAHGIQVGC-DSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXA 335

Query: 84  KLGHKEKSLQLFNVMP---QKNDF-------------------SW--------------- 106
           + G  ++++ LF+ M    +K D                     W               
Sbjct: 336 EKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLM 395

Query: 107 --NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
             N LI  +AK G +  AR LF  MP ++ ++W ++I     NG  +EA+ LF +    +
Sbjct: 396 VCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQ----M 451

Query: 165 VE-RLQCDAFILATVIGACADLAALEYGKQIHS-----HILVNGLDFDSVLGSSLVNLYG 218
           VE  L+ +      V+ AC     LE G +  +     + +  GLD  S +     +L G
Sbjct: 452 VELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMA----DLLG 507

Query: 219 KCGDFNSANQVL-NMMKEPDDFCLSALIS 246
           + G    A + + NM  +PD    S L+S
Sbjct: 508 RKGRLKEAFEFIQNMPFKPDVGIWSVLLS 536


>gi|302142629|emb|CBI19832.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 220/458 (48%), Gaps = 60/458 (13%)

Query: 9   ARLLQSCNTHH--SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
           A  LQ C  H+  S  + + +H H +  G       I NRL+ +Y +  +   A  LFDE
Sbjct: 15  AAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGY-ILNRLIDVYCKSSDLVSAHHLFDE 73

Query: 67  MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
           +                                Q +  +   LI+  + AG    AR +F
Sbjct: 74  IR-------------------------------QPDIVARTTLIAAHSSAGNSNLAREIF 102

Query: 127 NDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
              P   R+ + +N+MI  Y  N     A+ LF++L   L    + D F   +V+GA A 
Sbjct: 103 FATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL---LRNGFRPDNFTFTSVLGALAL 159

Query: 185 LAALEYG-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGD---------FNSANQVLNMMK 234
           +   E   +QIH  ++ +G  F + + ++L++++ KC             +A ++ + M 
Sbjct: 160 IVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMT 219

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHK 294
           E D+   + +I+GY   G+++ AR+  D  T+   V WN+MISGY+ +    EAL +F K
Sbjct: 220 ERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRK 279

Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV----GVIDDVIVASALLDTYS 350
           M   G+  D  T  SVLSAC++ GF  HGKQVH +  +      +   + V +AL   Y 
Sbjct: 280 MYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYW 339

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K G   +A ++F+++ V D +  N +++ Y+       A  +F TMP    +SWN+MI  
Sbjct: 340 KCGKVDEARQVFNQMPVKDLVSWNAILSGYA-------AHCLFLTMPYLDSVSWNAMIAA 392

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           L Q+G   +AL+LF  M K D+  D+ +  +V+S C++
Sbjct: 393 LGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSH 430



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 159/317 (50%), Gaps = 18/317 (5%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
            + +H+H++ +G      + + L+++Y K  D  SA+ + + +++PD    + LI+ +++
Sbjct: 32  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 91

Query: 251 CGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
            G  N AR +F  T      +V +N+MI+GY  NN+   A+ LF  + RNG   D  T  
Sbjct: 92  AGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFT 151

Query: 309 SVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMP---------SDA 358
           SVL A + +   E   +Q+H    K G      V +ALL  + K             + A
Sbjct: 152 SVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAA 211

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
            KLF E+   D +   TMI  Y   G ++ A+     M  K +++WN+MI G   +G  +
Sbjct: 212 RKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFL 271

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII----GLDSDQIIS 474
           EAL++F  M  L ++ D+F+  SV+SACAN      G+QV A +        LD    ++
Sbjct: 272 EALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVN 331

Query: 475 TSLVDFYCKCGFIKMDE 491
            +L   Y KCG  K+DE
Sbjct: 332 NALATLYWKCG--KVDE 346



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 55/310 (17%)

Query: 25  KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP---------TDALLLFDEMPRRNCFSW 75
           +Q+H   +K G    T  + N LL ++++C +            A  LFDEM  R+  SW
Sbjct: 168 QQIHCAVVKSGSGFVT-SVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSW 226

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
             MI G+++ G  + + Q  + M +K   +WN +ISG                       
Sbjct: 227 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISG----------------------- 263

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
                   YV +GF  EA+ +F+++    +  +Q D F   +V+ ACA+     +GKQ+H
Sbjct: 264 --------YVHHGFFLEALEMFRKM---YLLGIQWDEFTYTSVLSACANAGFFLHGKQVH 312

Query: 196 SHILVN----GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251
           ++IL       LDF   + ++L  LY KCG  + A QV N M   D    +A++SGYA  
Sbjct: 313 AYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYA-- 370

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
                A  +F       SV WN+MI+    +    +AL LF  M +  +L D  T  +VL
Sbjct: 371 -----AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVL 425

Query: 312 SACSSLGFLE 321
           S CS  G ++
Sbjct: 426 STCSHAGLVQ 435


>gi|218201765|gb|EEC84192.1| hypothetical protein OsI_30581 [Oryza sativa Indica Group]
          Length = 715

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 197/402 (49%), Gaps = 40/402 (9%)

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
            AR +F+ M RR A++WN+ +  + R G  R+A+     ++         D    A+ +G
Sbjct: 64  AARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAA---GLDEATYASALG 120

Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
           ACA    L  G Q+H  ++ +G D   V+G+SL++ Y  C D ++A  + + +   ++  
Sbjct: 121 ACARGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELL 180

Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYI--SNNEDTEALLLFHKM-R 296
            S ++        ++DA  +  R   +  +  W ++ISGY   +N    ++L LF ++  
Sbjct: 181 WSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLA 240

Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG--- 353
            +GV+ +  T  SVL AC  +G LE G+ +HG   + G   + ++ SAL+D Y + G   
Sbjct: 241 EDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVD 300

Query: 354 ----------MPS------------------DACKLFSELKVYDTILLNTMITVYSSCGR 385
                     MPS                  DA  +FS++  +D+   N MI  Y+  GR
Sbjct: 301 DAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGR 360

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +ED + +F  MP +++++ NSM+  L QNG   E   LF  +     R   F   +++ A
Sbjct: 361 LEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIRMKGTRASTFP--ALLHA 418

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           CA I ++E G+ V A +     +S+  + T+LVD Y KCG +
Sbjct: 419 CATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCV 460



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 219/518 (42%), Gaps = 97/518 (18%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIAN-RLLQMYMRCGNPTDALLLFDEM 67
           A  L +C     + +G Q+H   +K G  +   P+    LL  Y  C +   A  LFD +
Sbjct: 116 ASALGACARGRCLRMGWQVHCQVVKSG--SDDFPVVGASLLDFYSSCLDLDAARTLFDTL 173

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
              N   W+ M+   ++      +L L   MP                            
Sbjct: 174 HANNELLWSPMVVALVRFNLLSDALDLLQRMP---------------------------- 205

Query: 128 DMPRRNAIAWNSMIHCYVR--NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
             P R+  AW ++I  Y R  N +  +++ LF +L ++  + +  + F   +V+ AC  +
Sbjct: 206 --PSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAE--DGVMPNEFTYDSVLRACVKM 261

Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
            ALE+G+ IH  ++ +G + + ++ S+LV+LY + G  + A  V N ++ P     + LI
Sbjct: 262 GALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLI 321

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR-------- 297
           +G+ + G+  DA+ VF + T+  S  +N MI  Y       +   +F  M R        
Sbjct: 322 AGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNS 381

Query: 298 -------NGVLED--------------ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
                  NG LE+              AST  ++L AC+++G +E GK VH   CK    
Sbjct: 382 MMSVLLQNGKLEEGRKLFEQIRMKGTRASTFPALLHACATIGTIEQGKMVHALLCKTPFE 441

Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
            +  V +AL+D YSK                               CG + DA+  F  +
Sbjct: 442 SNGYVGTALVDMYSK-------------------------------CGCVSDARAAFSCI 470

Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
            + ++ SW S+I GL+QNG  +EA+  F  M K +++ ++ +   ++ A A    +  G 
Sbjct: 471 MSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGM 530

Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
           + F  +   G+       T  VD   +   ++  E ++
Sbjct: 531 RFFHSMESYGVVPTVEHYTCAVDLLGRARRVREAEKFI 568



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 173/371 (46%), Gaps = 40/371 (10%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C    ++  G+ +H   ++ G  +  L I + L+ +Y R G   DA+++++ +   
Sbjct: 254 VLRACVKMGALEFGRSIHGCLIQSGFESEQL-ITSALVDLYCRSGAVDDAVMVYNGLQMP 312

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  + N +I GF+ +G  E +  +F+ M + +  S+N++I  +A  G L+  R +F  MP
Sbjct: 313 SLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMP 372

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ-CDAFILATVIGACADLAALE 189
           RRN +  NSM+   ++NG   E  +LF+++      R++   A     ++ ACA +  +E
Sbjct: 373 RRNMVTLNSMMSVLLQNGKLEEGRKLFEQI------RMKGTRASTFPALLHACATIGTIE 426

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            GK +H+ +     + +  +G++LV++Y KCG                  C+S       
Sbjct: 427 QGKMVHALLCKTPFESNGYVGTALVDMYSKCG------------------CVS------- 461

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
                 DAR  F      +   W S+I+G   N    EA++ F +M +N V  +  T   
Sbjct: 462 ------DARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLG 515

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-Y 368
           +L A +  G +  G +        GV+  V   +  +D   +     +A K  S++ +  
Sbjct: 516 ILMASARAGLVNKGMRFFHSMESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPA 575

Query: 369 DTILLNTMITV 379
           D ++   ++T 
Sbjct: 576 DGVVWGALLTA 586



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 26/250 (10%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           TR      LL +C T  +I  GK +H   L K    S   +   L+ MY +CG  +DA  
Sbjct: 407 TRASTFPALLHACATIGTIEQGKMVHA-LLCKTPFESNGYVGTALVDMYSKCGCVSDARA 465

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISGFAKA 116
            F  +   N  SW ++I G  + GH  +++  F      NV P  N+ ++  ++   A+A
Sbjct: 466 AFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKP--NEITFLGILMASARA 523

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDA 172
           G +      F+ M     +       C V    R    REA +   ++       +  D 
Sbjct: 524 GLVNKGMRFFHSMESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMP------IPADG 577

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV--- 229
            +   ++ AC     LE G+++   +   G    S    ++ N+Y K G +    +V   
Sbjct: 578 VVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAY-VAMSNIYAKLGKWEDVVKVRTR 636

Query: 230 ---LNMMKEP 236
              +N  KEP
Sbjct: 637 LRSINAKKEP 646


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 128/554 (23%), Positives = 234/554 (42%), Gaps = 143/554 (25%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL----------------- 92
           MY +CG+  DAL +F  +   N  SW  ++  F + GH  ++L                 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 93  -----------------QLFNVM---PQKNDFS---WNMLISGFAKAGELKTARTLFNDM 129
                            QL + M    Q  +F       LI+ +A+  +L+ AR  F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
            ++  + WN++I  Y RNG  R A+++++++ S   E ++ DA   ++ + AC+ +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G++I +  + +G   DS++ ++L+N+Y K                              
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSK------------------------------ 210

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CG +  AR+VFDR  +   + WN+MISGY      T+AL LF +M  N    +  T   
Sbjct: 211 -CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD---------------------- 347
           +L+AC++L  LE G+ +H    + G   D+++ + LL+                      
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR 329

Query: 348 ----------TYSKRGMPSDACKLFSELKV------------------------------ 367
                      Y + G   DA  +F ++++                              
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVH 389

Query: 368 ---------YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                     D +L N+++ +Y+ CG ++D   +F  + +KSL+SW+++I   +Q+G   
Sbjct: 390 ALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSR 449

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSL 477
             L+ F  + +  L  D  ++ S +SAC++   L+ G Q F + V   GL  D      +
Sbjct: 450 TGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCM 509

Query: 478 VDFYCKCGFIKMDE 491
           VD   + G ++  E
Sbjct: 510 VDLLSRAGRLEAAE 523



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/510 (23%), Positives = 202/510 (39%), Gaps = 147/510 (28%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C++   +  G+ LH   L+  +L   + +   L+ MY RC +   A   FDEM ++   +
Sbjct: 68  CSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVM---------PQKNDFS-------------------- 105
           WNA+I G+ + G    +L+++  M         P    FS                    
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEA 187

Query: 106 -------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                         N LI+ ++K G L++AR +F+ +  R+ IAWN+MI  Y + G A +
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF+ +  +     + +      ++ AC +L  LE G+ IH  +  +G + D V+G+ 
Sbjct: 248 ALELFQRMGPN---DPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNV 304

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+N+Y KC                                 + +AR+VF+R      + W
Sbjct: 305 LLNMYTKCSS------------------------------SLEEARQVFERLRTRDVITW 334

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG---- 328
           N +I  Y+   +  +AL +F +M+   V  +  TL++VLSAC+ LG    GK VH     
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS 394

Query: 329 HACKV---------------GVIDDVIVA------------SALLDTYSKRGMPSDACKL 361
             CK                G +DD +              S L+  Y++ G      + 
Sbjct: 395 GRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEH 454

Query: 362 FSEL-----KVYDTILLNT-----------------------------------MITVYS 381
           F EL        D  +++T                                   M+ + S
Sbjct: 455 FWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLS 514

Query: 382 SCGRIEDAKHIFRTMPN-KSLISWNSMIVG 410
             GR+E A+++   MP     ++W S++ G
Sbjct: 515 RAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 128/327 (39%), Gaps = 77/327 (23%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
           LL +C     +  G+ +H    + G   S L I N LL MY +C +   +A  +F+ +  
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVKEHG-YESDLVIGNVLLNMYTKCSSSLEEARQVFERLRT 328

Query: 70  RNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFS------------------ 105
           R+  +WN +I  +++ G  +      K +QL NV P +   S                  
Sbjct: 329 RDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAV 388

Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                           N L++ + + G L     +F  +  ++ ++W+++I  Y ++G +
Sbjct: 389 HALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHS 448

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ-IHSHILVNGLDFDSVL 209
           R  +  F EL   L E L  D   + + + AC+    L+ G Q   S +  +GL  D   
Sbjct: 449 RTGLEHFWEL---LQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRH 505

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
              +V+L  + G   +A  +++ M   PD                               
Sbjct: 506 FLCMVDLLSRAGRLEAAENLIHDMPFLPD------------------------------- 534

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKM 295
           +V W S++SG   +N+   A  +  K+
Sbjct: 535 AVAWTSLLSGCKLHNDTKRAARVADKL 561


>gi|255544628|ref|XP_002513375.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547283|gb|EEF48778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 922

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 230/518 (44%), Gaps = 107/518 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ SC +     +G Q+  H +K G L + + + N L+ M+   G   +A  +F  M
Sbjct: 419 LATVISSCASLEDEFLGHQILGHVIKSG-LGTNVSVENSLISMFGSFGRAQEACYIFGGM 477

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------NDFSW-- 106
              +  SWN+MI  +++ G  E+SL+ F  M                      ++  W  
Sbjct: 478 NEHDIISWNSMISVYVQNGLFEESLRCFYWMQHVHNHINSTTLSTLLSECGSVDNLKWGR 537

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LI+ ++ AG+ + A  +F  M  R+ I+WNSM+ CY ++G
Sbjct: 538 GIHSLVIKFGMDSNICICNTLIAMYSGAGKSEHADLVFQKMAERDLISWNSMLACYAQDG 597

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
            + +A+++F  +      +   +     + + AC+D   +  G+ +H+ +++ GL    +
Sbjct: 598 KSLDALKIFTRI---FHMKKGANFVTFTSALAACSDPDFIAEGRILHALVILTGLHESLI 654

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LV LY K                                G   +A++VF   +   
Sbjct: 655 VSNALVTLYAKS-------------------------------GTTIEAKKVFQMMSRRD 683

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGFLEHGKQVH 327
            V WN++I G+ +N E  EA+  F K+ R  +     T+A+VL A  +    L+HG  +H
Sbjct: 684 EVTWNALIGGHANNRESDEAVKAF-KLMREDIPASYITIANVLGALLAPTDLLKHGMPIH 742

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
            +   +G+  D  V                                N++IT+Y+ CG + 
Sbjct: 743 AYTVMIGLESDQYVQ-------------------------------NSLITMYAKCGDLN 771

Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
            +  IF  + NK+ ++WN+++   + +G   E+L L   M    + +D+FS +  +SA A
Sbjct: 772 SSNCIFDGLINKNAVAWNTVMAANAYHGQMEESLKLLVKMRHAGVDLDQFSFSGCLSATA 831

Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
            ++ LE G+Q+ +    +G DSD  ++ +L+D Y KCG
Sbjct: 832 TLAMLEEGQQLQSLAVKLGFDSDPFVTNALMDMYAKCG 869



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 219/502 (43%), Gaps = 106/502 (21%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GK LH     KG+ N  +   N L+ MY + G    A  +FDEM  +N  SWN +I  ++
Sbjct: 232 GKALHA-LCIKGLANLGVFYNNTLINMYSKFGYICLARYVFDEMSEKNEASWNHIISAYL 290

Query: 84  KLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKT------------------ 121
             G   +S+ LFN M     +   F++  L++   ++G + +                  
Sbjct: 291 HAGLYRESIGLFNDMRDLGIKPTGFAFASLVTACDRSGCMLSEGIQVHDLIVKFGMLCDV 350

Query: 122 ------------------ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
                             AR +FN+M  +N ++W +++  Y   G   E + ++ E+   
Sbjct: 351 FVGTSLLHFYGTYGLAFNARRVFNEMLDKNVVSWTALMVAYSDFGDPMEVMNIYCEMR-- 408

Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
             E L  +A  LATVI +CA L     G QI  H++ +GL  +  + +SL++++G  G  
Sbjct: 409 -CEGLSGNANTLATVISSCASLEDEFLGHQILGHVIKSGLGTNVSVENSLISMFGSFGRA 467

Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
             A  +   M E D      +IS                         WNSMIS Y+ N 
Sbjct: 468 QEACYIFGGMNEHD------IIS-------------------------WNSMISVYVQNG 496

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
              E+L  F+ M+      +++TL+++LS C S+  L+ G+ +H    K           
Sbjct: 497 LFEESLRCFYWMQHVHNHINSTTLSTLLSECGSVDNLKWGRGIHSLVIKF---------- 546

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
                    GM S+ C            + NT+I +YS  G+ E A  +F+ M  + LIS
Sbjct: 547 ---------GMDSNIC------------ICNTLIAMYSGAGKSEHADLVFQKMAERDLIS 585

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           WNSM+   +Q+G  ++AL +F  +  +    +  +  S ++AC++   +  G  + A V 
Sbjct: 586 WNSMLACYAQDGKSLDALKIFTRIFHMKKGANFVTFTSALAACSDPDFIAEGRILHALVI 645

Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
           + GL    I+S +LV  Y K G
Sbjct: 646 LTGLHESLIVSNALVTLYAKSG 667



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 193/429 (44%), Gaps = 76/429 (17%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ LL  C +  ++  G+ +H   +K G ++S + I N L+ MY   G    A L+F +M
Sbjct: 520 LSTLLSECGSVDNLKWGRGIHSLVIKFG-MDSNICICNTLIAMYSGAGKSEHADLVFQKM 578

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNV---MPQKNDFSW------------------ 106
             R+  SWN+M+  + + G    +L++F     M +  +F                    
Sbjct: 579 AERDLISWNSMLACYAQDGKSLDALKIFTRIFHMKKGANFVTFTSALAACSDPDFIAEGR 638

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ +AK+G    A+ +F  M RR+ + WN++I  +  N 
Sbjct: 639 ILHALVILTGLHESLIVSNALVTLYAKSGTTIEAKKVFQMMSRRDEVTWNALIGGHANNR 698

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGAC-ADLAALEYGKQIHSHILVNGLDFDS 207
            + EAV+ FK +  D+          +A V+GA  A    L++G  IH++ ++ GL    
Sbjct: 699 ESDEAVKAFKLMREDI----PASYITIANVLGALLAPTDLLKHGMPIHAYTVMIGL---- 750

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
                                      E D +  ++LI+ YA CG +N +  +FD   + 
Sbjct: 751 ---------------------------ESDQYVQNSLITMYAKCGDLNSSNCIFDGLINK 783

Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
           ++V WN++++    + +  E+L L  KMR  GV  D  + +  LSA ++L  LE G+Q+ 
Sbjct: 784 NAVAWNTVMAANAYHGQMEESLKLLVKMRHAGVDLDQFSFSGCLSATATLAMLEEGQQLQ 843

Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
             A K+G   D  V +AL+D Y+K G   D  ++  +      +  NT+I+ ++  G  E
Sbjct: 844 SLAVKLGFDSDPFVTNALMDMYAKCGELDDVLRIIPQPLERSRLSWNTLISSFARHGNFE 903

Query: 388 DAKHIFRTM 396
            AK  F  M
Sbjct: 904 RAKETFHEM 912



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 144/331 (43%), Gaps = 74/331 (22%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C+    I  G+ LH   +  G L+ +L ++N L+ +Y + G   +A  +F  M RR+
Sbjct: 625 LAACSDPDFIAEGRILHALVILTG-LHESLIVSNALVTLYAKSGTTIEAKKVFQMMSRRD 683

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ------------------------------- 100
             +WNA+I G       +++++ F +M +                               
Sbjct: 684 EVTWNALIGGHANNRESDEAVKAFKLMREDIPASYITIANVLGALLAPTDLLKHGMPIHA 743

Query: 101 --------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                    + +  N LI+ +AK G+L ++  +F+ +  +NA+AWN+++     +G   E
Sbjct: 744 YTVMIGLESDQYVQNSLITMYAKCGDLNSSNCIFDGLINKNAVAWNTVMAANAYHGQMEE 803

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           +++L  ++    V+    D F  +  + A A LA LE G+Q+ S  L   L FDS     
Sbjct: 804 SLKLLVKMRHAGVD---LDQFSFSGCLSATATLAMLEEGQQLQS--LAVKLGFDS----- 853

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                   D F  +AL+  YA CG+++D  R+  +  + S + W
Sbjct: 854 ------------------------DPFVTNALMDMYAKCGELDDVLRIIPQPLERSRLSW 889

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLED 303
           N++IS +  +     A   FH+M + GV  D
Sbjct: 890 NTLISSFARHGNFERAKETFHEMLKCGVTPD 920


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 148/587 (25%), Positives = 240/587 (40%), Gaps = 144/587 (24%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L ++C+    +   +Q+H   +  G ++    +++R+L +Y+ CG  +D   LF  +
Sbjct: 47  LESLFRACSDASVVQQARQVHTQIIVGG-MSDVCALSSRVLGLYVLCGRISDGGNLFFGL 105

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW--------------- 106
              N   WN MI G   LG  + +L  +      NV P K  F +               
Sbjct: 106 ELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCM 165

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             + LI  +A  G +  AR +F+++P+R+ I WN M+H YV++G
Sbjct: 166 VVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSG 225

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
               A+  F  + +        ++     ++  CA       G Q+H  ++ +G +FD  
Sbjct: 226 DFNNAMGTFCGMRTSYS---MVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQ 282

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LV +Y KC                               G + DAR++F+    T 
Sbjct: 283 VANTLVAMYSKC-------------------------------GNLFDARKLFNTMPQTD 311

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
           +V WN +I+GY+ N    EA  LF+ M   GV  D+ T AS L +    G L H K+VH 
Sbjct: 312 TVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHS 371

Query: 329 HAC----------KVGVID---------------------DVIVASALLDTYSKRGMPSD 357
           +            K  +ID                     DV V +A++  Y   G+  D
Sbjct: 372 YIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNID 431

Query: 358 ACKLFSEL--------------------------------------KVYDTILLNTMIT- 378
           A   F  L                                      ++ + + + + IT 
Sbjct: 432 AINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITD 491

Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438
           +Y+ CGR++ A   FR M     I WNSMI   SQNG P  A+DLF  M     + D  S
Sbjct: 492 MYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVS 551

Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           L+S +S+ AN+ +L  G+++   V      SD  ++++L+D Y KCG
Sbjct: 552 LSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCG 598



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 227/515 (44%), Gaps = 106/515 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L  C T     +G Q+H   +  G       +AN L+ MY +CGN  DA  LF+ MP+ 
Sbjct: 252 ILSICATRGKFCLGTQVHGLVIGSG-FEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQT 310

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDFS------------------- 105
           +  +WN +I G+++ G  +++  LFN M      P    F+                   
Sbjct: 311 DTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVH 370

Query: 106 --------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                          + LI  + K G+++ AR +F      +     +MI  YV +G   
Sbjct: 371 SYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNI 430

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A+  F+ L   + E +  ++  +A+V+ ACA LAAL+ GK++H  IL   L+    +GS
Sbjct: 431 DAINTFRWL---IQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGS 487

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           ++ ++Y K                               CG+++ A   F R ++T S+ 
Sbjct: 488 AITDMYAK-------------------------------CGRLDLAYEFFRRMSETDSIC 516

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WNSMIS +  N +   A+ LF +M  +G   D+ +L+S LS+ ++L  L +GK++HG+  
Sbjct: 517 WNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVI 576

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +     D  VASAL+D YSK                               CG++  A+ 
Sbjct: 577 RNAFSSDTFVASALIDMYSK-------------------------------CGKLALARC 605

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  M  K+ +SWNS+I     +G   E LDLF  M +  +  D  +   +ISAC +   
Sbjct: 606 VFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGL 665

Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCG 485
           +  G   F  +T   G+ +       +VD Y + G
Sbjct: 666 VGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAG 700



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 158/381 (41%), Gaps = 67/381 (17%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIH-CYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175
           G +     LF  +   NA+ WN MI   Y+   F    +  FK L S++      D +  
Sbjct: 93  GRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSP----DKYTF 148

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
             VI AC  L  +     +H+     G   D  +GS+L+ LY                  
Sbjct: 149 PYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLY------------------ 190

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                        A+ G + DARRVFD      +++WN M+ GY+ + +   A+  F  M
Sbjct: 191 -------------ADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGM 237

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
           R +  + ++ T   +LS C++ G    G QVHG          +++ S            
Sbjct: 238 RTSYSMVNSVTYTCILSICATRGKFCLGTQVHG----------LVIGSGF---------- 277

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                       +D  + NT++ +YS CG + DA+ +F TMP    ++WN +I G  QNG
Sbjct: 278 -----------EFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNG 326

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
              EA  LF  M    ++ D  + AS + +     SL   ++V + +    +  D  + +
Sbjct: 327 FTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKS 386

Query: 476 SLVDFYCKCGFIKMDEYYLMQ 496
           +L+D Y K G ++M      Q
Sbjct: 387 ALIDIYFKGGDVEMARKIFQQ 407



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 132/296 (44%), Gaps = 44/296 (14%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +AK G L  A   F  M   ++I WNSMI  + +NG    AV LF+++    +   + D+
Sbjct: 493 YAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMG---MSGAKFDS 549

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
             L++ + + A+L AL YGK++H +++ N    D+                         
Sbjct: 550 VSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDT------------------------- 584

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                 F  SALI  Y+ CGK+  AR VF+     + V WNS+I+ Y ++    E L LF
Sbjct: 585 ------FVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLF 638

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC---KVGVIDDVIVASALLDTY 349
           H+M R GV  D  T   ++SAC   G +  G+ +H   C   + G+   +   + ++D Y
Sbjct: 639 HEMLRAGVHPDHVTFLVIISACGHAGLV--GEGIHYFHCMTREYGIGARMEHYACMVDLY 696

Query: 350 SKRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIEDAK----HIFRTMPNKS 400
            + G   +A      +    D  +  T++      G +E AK    H+    P  S
Sbjct: 697 GRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNS 752



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 31/183 (16%)

Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
           + L S+  ACS    ++  +QVH           +IV           GM SD C L S 
Sbjct: 45  TQLESLFRACSDASVVQQARQVH---------TQIIVG----------GM-SDVCALSSR 84

Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
           +           + +Y  CGRI D  ++F  +   + + WN MI GL   G    AL  +
Sbjct: 85  V-----------LGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFY 133

Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
             M   ++  DK++   VI AC  ++++ L   V      +G   D  + ++L+  Y   
Sbjct: 134 FKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADN 193

Query: 485 GFI 487
           G+I
Sbjct: 194 GYI 196


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 215/453 (47%), Gaps = 95/453 (20%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           LL+SC        G+Q+H H LK G     L +   L+ MY++ G   DA  +FD    R
Sbjct: 109 LLKSCAKLKVSKEGQQIHGHVLKLG-YELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHR 167

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           +  S+ A                               LI+G+A  G +++A+ +F+++P
Sbjct: 168 DVVSYTA-------------------------------LITGYASRGYIESAQKMFDEIP 196

Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
            ++ ++WN++I  Y   G  +EA+ LFKE+   +   ++ D   + TV+ ACA   +++ 
Sbjct: 197 VKDVVSWNAIISGYADTGNNKEALDLFKEM---MKTNVKPDESTMVTVVSACAQSGSIQL 253

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
           G+Q+HS I  +GL      GS+L              +++N           ALI  Y+ 
Sbjct: 254 GRQVHSWIDDHGL------GSNL--------------KIVN-----------ALIDLYSK 282

Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           CG++  A  +F   ++   + WN+MI GY   N   EALLLF +M R+G   +  T+ S+
Sbjct: 283 CGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSI 342

Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
           L AC+ LG ++ G+ +H +  K   I  V  AS+                          
Sbjct: 343 LPACAQLGAIDFGRWIHVYIDK--RIKGVTNASS-------------------------- 374

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
            L  ++I +Y+ CG IE A  +F +M +++L + N+MI G + +G    A D+F  M K 
Sbjct: 375 -LRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKN 433

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVT 463
            +  D  +   ++SAC++   L+LG ++F  +T
Sbjct: 434 GIEPDDITFVGLLSACSHSGMLDLGRRIFRSMT 466



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 182/372 (48%), Gaps = 36/372 (9%)

Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           L  A ++F  +   N + WN+M   +  +     A++L+  + S     L  +++    +
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMIS---LGLLPNSYTFPFL 109

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
           + +CA L   + G+QIH H+L  G + D  + +SL+++Y K G +  A++V +     D 
Sbjct: 110 LKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDV 169

Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
              +ALI+GYA+ G +  A+++FD       V WN++ISGY     + EAL LF +M + 
Sbjct: 170 VSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKT 229

Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
            V  D ST+ +V+SAC+  G ++ G+QVH      G+  ++ + +AL+D YSK G    A
Sbjct: 230 NVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETA 289

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
           C LF  L   D I  NTMI  Y+     +                               
Sbjct: 290 CGLFQGLSNKDVISWNTMIGGYTHLNLYK------------------------------- 318

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
           EAL LF  M +     +  ++ S++ ACA + +++ G    V+    I G+ +   + TS
Sbjct: 319 EALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTS 378

Query: 477 LVDFYCKCGFIK 488
           L+D Y KCG I+
Sbjct: 379 LIDMYAKCGDIE 390


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 213/445 (47%), Gaps = 51/445 (11%)

Query: 51  YMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           Y++CG   +A  LFD     +N  +W A++ G+++    E++ +LF+ MP KN  SWN +
Sbjct: 107 YIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTM 166

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I G+A+ G +  A  LF  MP RN ++WN++I  +++     EA  LF  +     ER  
Sbjct: 167 IEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMP----ER-- 220

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D     T++   +    ++  + +   + V  +    V  ++++  Y +    + A ++
Sbjct: 221 -DVISWTTMVAGLSKNGRIDDARLLFDKMPVRNV----VSWNTMIIGYAQNMRLDEAFKL 275

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M E +    + +I+G+   GK+  A   F + ++ + V W ++ISG++ +    EAL
Sbjct: 276 FEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEAL 335

Query: 290 LLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
            +F +M+  N V  +  T  SVL ACS L  L  G+Q+H    K    +   V SAL++ 
Sbjct: 336 KIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINM 395

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR--TMPNKSLISWNS 406
           YSK                               CG +E A+ IF   ++ ++ ++SWN 
Sbjct: 396 YSK-------------------------------CGELELARKIFDDGSIGHRDVVSWNG 424

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF---ARVT 463
           MI   + +G   +A+ LF  M  L  R D  +  +++SAC++   ++ G ++F    R  
Sbjct: 425 MIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDR 484

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            I L  D    T LVD + + G ++
Sbjct: 485 SIKLREDHF--TCLVDLFGRAGRLQ 507



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 37/313 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++ Y R G    AL LF++MP RN  SWN +I  FM+    +++ +LFN MP+++  
Sbjct: 164 NTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVI 223

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF-----KE 159
           SW  +++G +K G +  AR LF+ MP RN ++WN+MI  Y +N    EA +LF     +E
Sbjct: 224 SWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERE 283

Query: 160 LNS------------------DLVERLQCDAFILATVI--GACADLAALEYGK-----QI 194
           L+S                  D   ++     +  T +  G   D  + E  K     Q 
Sbjct: 284 LSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQA 343

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALISGYANCG 252
            +++  N   F SVLG+    L   C +    +Q+++  + +E  D  +SALI+ Y+ CG
Sbjct: 344 ANNVKPNEGTFVSVLGAC-SKLAALC-EGQQIHQIISKTVYQEVAD-VVSALINMYSKCG 400

Query: 253 KMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           ++  AR++FD  +      V WN MI+ Y  +    +A+ LF +M+  G   D  T  ++
Sbjct: 401 ELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIAL 460

Query: 311 LSACSSLGFLEHG 323
           LSACS  G ++ G
Sbjct: 461 LSACSHAGLVDEG 473



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 37/245 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MP 68
           +L +C+   ++  G+Q+H   + K +      + + L+ MY +CG    A  +FD+  + 
Sbjct: 357 VLGACSKLAALCEGQQIH-QIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTART 124
            R+  SWN MI  +   GH  K++ LF+ M     + ++ ++  L+S  + AG +     
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           LF ++ R  +I      +  ++  + R G  +EA    K L       ++  A + A ++
Sbjct: 476 LFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL------EVKPSASVWAALL 529

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVL-------GSSLV--NLYGKCGDFNSANQVL 230
             C           +H HI +  L  + +L       G+ LV  N+Y   G +  A  V 
Sbjct: 530 AGC----------NVHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVR 579

Query: 231 NMMKE 235
             MK+
Sbjct: 580 MKMKD 584


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 202/438 (46%), Gaps = 73/438 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            + LLQSC    S+  GKQ+H   +  G       I+N LL  Y                
Sbjct: 65  FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKF-ISNHLLNFYS--------------- 108

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
                           KLG  + SL LF+ MP++N  S+N+LI+G+ + G+L++A+ LF+
Sbjct: 109 ----------------KLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFD 152

Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
           +M  RN   WN+MI    +  F ++A+ LFKE+          D F L +V+  CA L +
Sbjct: 153 EMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYG---LGFLPDEFTLGSVLRGCAGLRS 209

Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
           L  G+++H+ +L  G +  SV+GSSL ++Y K G                          
Sbjct: 210 LLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGS------------------------- 244

Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
                 ++D  ++       + V WN++I+G   N    E L  ++ M+  G   D  T 
Sbjct: 245 ------LSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITF 298

Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
            SVLSACS L  L  G+Q+H    K G    + V S+L+  YS+ G   D+ K F + + 
Sbjct: 299 VSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDREN 358

Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNG---SPIEA 420
           +D +L ++MI  Y   GR E+A  +F  M +  +    +++ S++   S +G      E 
Sbjct: 359 FDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEY 418

Query: 421 LDLFCNMNKLDLRMDKFS 438
            DL     KL  R++ ++
Sbjct: 419 FDLMVKKYKLKPRIEHYT 436



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 158/328 (48%), Gaps = 31/328 (9%)

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
           K+        +  D  + + ++ +C  L +L  GKQ+HS I+ +G   D  + + L+N Y
Sbjct: 48  KQAYDTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFY 107

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            K G F S+  + + M   +    + LI+GY   G +  A+++FD  ++ +   WN+MI+
Sbjct: 108 SKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIA 167

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
           G      + +AL LF +M   G L D  TL SVL  C+ L  L  G++VH    K G   
Sbjct: 168 GLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFEL 227

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
             +V S+L   Y K G  SD  KL                                ++MP
Sbjct: 228 SSVVGSSLAHMYIKSGSLSDGEKL-------------------------------IKSMP 256

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            +++++WN++I G +QNG P E L+ +  M     R DK +  SV+SAC+ +++L  G+Q
Sbjct: 257 IRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQ 316

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCG 485
           + A V   G  S   + +SL+  Y + G
Sbjct: 317 IHAEVIKAGASSVLAVVSSLISMYSRSG 344


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 221/517 (42%), Gaps = 124/517 (23%)

Query: 24  GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
           GKQLH H +K G     L + N++L +Y++C    DA  LF+E+P RN  SWN MI   +
Sbjct: 79  GKQLHAHLIKFGFCQ-VLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASV 137

Query: 84  KLGHKEKS------------LQLFNVMP-------------QKNDFSWNM---------- 108
               + +S            + L  ++P             Q ND    +          
Sbjct: 138 GRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVG 197

Query: 109 ----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
                     L+  +AK G ++ AR +F D+  R+ + WN M+ CYV N    EA R+F 
Sbjct: 198 FDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFN 257

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEY---GKQIHSHILVNGLDFDSVLGSSLVN 215
            +  D+V     D F  ++++   +D  ALEY   GKQ+HS +L    D D ++ S+L+N
Sbjct: 258 SMRLDVVNG---DEFTFSSLLSVISD-DALEYYDFGKQVHSLVLRQSFDSDVLVASALIN 313

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +                               YA    + DARRVFD  +  + V WN+M
Sbjct: 314 M-------------------------------YAKSENIIDARRVFDEMSIRNVVAWNTM 342

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
           I G+ ++ +  E + L  +M R G L D  T++S++S+C     +    QVH  A K+  
Sbjct: 343 IVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSC 402

Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
            D + VA++L+  YSK                               CG I  A   F  
Sbjct: 403 QDFLSVANSLISAYSK-------------------------------CGSITSAFKCFEL 431

Query: 396 MPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455
                L++W S+I   + +G   ++ ++F  M    ++ D+ +   V+SACA+   +  G
Sbjct: 432 TSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKG 491

Query: 456 EQVFARVTIIGLDSDQIIS-----TSLVDFYCKCGFI 487
              F  +T    ++ QI+      T LVD   + G I
Sbjct: 492 LHYFKLMT----NAYQIVPDSEHYTCLVDLLGRYGLI 524



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 37/177 (20%)

Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
           G+L  GKQ+H H  K G                        C++ S        L N ++
Sbjct: 74  GYLPEGKQLHAHLIKFGF-----------------------CQVLS--------LQNQIL 102

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMI---VGLSQNGSPIEALDLFCNMNKLDLRM 434
           +VY  C   EDAK +F  +P ++++SWN MI   VG +           F    ++ L M
Sbjct: 103 SVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEM 162

Query: 435 ---DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
              D  +   +I  C   + +E+G Q+      +G D D  +  +LV  Y KCGF++
Sbjct: 163 MVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVE 219


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 216/491 (43%), Gaps = 105/491 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           ++ LL +C +   +  G QLH +  K GI +S   +   LL +Y++CG+   AL++F+  
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGI-SSDYIMEGSLLDLYVKCGDVETALVIFNSS 305

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ--------------------- 100
            R N   WN M+  F ++    KS +LF       + P                      
Sbjct: 306 DRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE 365

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K  F  +M +SG     ++K G L+ AR +   +  ++ ++W SMI  YV++ 
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
             ++A+  FKE+    +     D   LA+ I  CA + A+  G QIH+ I V+G   D  
Sbjct: 426 CCKDALAAFKEMQKCGI---WPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVS 482

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           + ++LVNLY                               A CG++ +A   F+      
Sbjct: 483 IWNALVNLY-------------------------------ARCGRIREAFSSFEEIEHKD 511

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            + WN ++SG+  +    EAL +F +M ++GV  +  T  S LSA ++L  ++ GKQ+H 
Sbjct: 512 EITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHA 571

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
              K G   +  V +AL+  Y K G   DA   FSE+   + +  NT+IT   SC     
Sbjct: 572 RVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT---SC----- 623

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
                                  SQ+G  +EALDLF  M K  ++ +  +   V++AC++
Sbjct: 624 -----------------------SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH 660

Query: 449 ISSLELGEQVF 459
           +  +E G   F
Sbjct: 661 VGLVEEGLSYF 671



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 223/517 (43%), Gaps = 105/517 (20%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L SC        G+ +H    K G   S + + N ++ +Y+RCG+   A  +F +M
Sbjct: 146 LSSVLSSCTKAELFAQGRLIHAQGYKHGFC-SEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ--------------------- 100
           P R+  ++N +I G  + GH E +L++F  M      P                      
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                  K   S + ++ G     + K G+++TA  +FN   R N + WN M+  + +  
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
              ++  LF ++ +  +   Q   F    ++  C     ++ G+QIHS  +  G + D  
Sbjct: 325 DLAKSFELFCQMQAAGIRPNQ---FTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
           +   L+++Y K                                G +  ARRV +   +  
Sbjct: 382 VSGVLIDMYSKY-------------------------------GWLEKARRVLEMLKEKD 410

Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
            V W SMI+GY+ +    +AL  F +M++ G+  D   LAS +S C+ +  +  G Q+H 
Sbjct: 411 VVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIH- 469

Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
                        A   +  YS                  D  + N ++ +Y+ CGRI +
Sbjct: 470 -------------ARIYVSGYSG-----------------DVSIWNALVNLYARCGRIRE 499

Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
           A   F  + +K  I+WN ++ G +Q+G   EAL +F  M++  ++ + F+  S +SA AN
Sbjct: 500 AFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASAN 559

Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           ++ ++ G+Q+ ARV   G   +  +  +L+  Y KCG
Sbjct: 560 LAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCG 596



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 219/506 (43%), Gaps = 105/506 (20%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
            V  ++H   + +G L     + N L+ +Y + G    A  +F+E+  R+  SW AM+ G
Sbjct: 59  QVVPEIHAKAVTRG-LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 82  FMKLGHKEKSLQLFNVMPQ---------------------------------------KN 102
           + + G  E++L L+  M +                                         
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
            F  N +I+ + + G  + A  +F DMP R+ + +N++I  + + G    A+ +F+E+  
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQ- 236

Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
                L  D   +++++ ACA L  L+ G Q+HS++   G+  D ++  SL++LY KCGD
Sbjct: 237 --FSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294

Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
             +                 AL+              +F+ +  T+ V+WN M+  +   
Sbjct: 295 VET-----------------ALV--------------IFNSSDRTNVVLWNLMLVAFGQI 323

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
           N+  ++  LF +M+  G+  +  T   +L  C+    ++ G+Q+H  + K G   D+ V+
Sbjct: 324 NDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
             L+D YSK G    A ++   LK  D                               ++
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKD-------------------------------VV 412

Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV 462
           SW SMI G  Q+    +AL  F  M K  +  D   LAS IS CA I+++  G Q+ AR+
Sbjct: 413 SWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI 472

Query: 463 TIIGLDSDQIISTSLVDFYCKCGFIK 488
            + G   D  I  +LV+ Y +CG I+
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIR 498



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 194/435 (44%), Gaps = 80/435 (18%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L++C     I +G+Q+H   +K G   S + ++  L+ MY + G    A  + + +  +
Sbjct: 351 ILRTCTCTREIDLGEQIHSLSVKTG-FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLF-------------------------NVMPQ----- 100
           +  SW +MI G+++    + +L  F                         N M Q     
Sbjct: 410 DVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIH 469

Query: 101 --------KNDFS-WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     D S WN L++ +A+ G ++ A + F ++  ++ I WN ++  + ++G   
Sbjct: 470 ARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHE 529

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA+++F  ++   V+    + F   + + A A+LA ++ GKQIH+ ++  G  F++ +G+
Sbjct: 530 EALKVFMRMDQSGVKH---NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN 586

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +L++LYGKCG F                                DA+  F   ++ + V 
Sbjct: 587 ALISLYGKCGSF-------------------------------EDAKMEFSEMSERNEVS 615

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHA 330
           WN++I+    +    EAL LF +M++ G+  +  T   VL+ACS +G +E G       +
Sbjct: 616 WNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMS 675

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIE-- 387
            + G+       + ++D + + G    A K   E+ +  D ++  T+++       IE  
Sbjct: 676 DEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVG 735

Query: 388 --DAKHIFRTMPNKS 400
              AKH+    P+ S
Sbjct: 736 EFAAKHLLELEPHDS 750



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA  +  C   +++  G Q+H      G  +  + I N L+ +Y RCG   +A   F+E+
Sbjct: 449 LASAISGCAGINAMRQGLQIHARIYVSG-YSGDVSIWNALVNLYARCGRIREAFSSFEEI 507

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSW----------------- 106
             ++  +WN ++ GF + G  E++L++F  M Q     N F++                 
Sbjct: 508 EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGK 567

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N LIS + K G  + A+  F++M  RN ++WN++I    ++G
Sbjct: 568 QIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLDFDS 207
              EA+ LF ++     E ++ +      V+ AC+ +  +E G     S     G+    
Sbjct: 628 RGLEALDLFDQMKK---EGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMM 233
              + +++++G+ G  + A + +  M
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEM 710



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%)

Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           I+ N +I +YS  G +  A+ +F  +  +  +SW +M+ G +QNG   EAL L+  M++ 
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMD 490
            +    + L+SV+S+C        G  + A+    G  S+  +  +++  Y +CG  ++ 
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 491 E 491
           E
Sbjct: 198 E 198


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 209/471 (44%), Gaps = 63/471 (13%)

Query: 17  THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWN 76
           TH        L +       L S +   N  +    R G   +A  +FDEM +R+   W 
Sbjct: 21  THCYYPFQNNLRIRSSSTATLTSEMKRCNYFISKLCREGKVNEARKVFDEMSKRDSCLWT 80

Query: 77  AMIEGFMKLGHKEKSLQLFNVM-PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
            MI G++K G   ++ +LF+    QK+   W  ++SG+ K   ++ A  LFN+MP RN +
Sbjct: 81  TMISGYIKCGLINEARKLFDRPDAQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVV 140

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNS-------------------DLVERL-----QCD 171
           +WN+MI  Y RNG  +EA+ LF  +                     D  ERL     + D
Sbjct: 141 SWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERD 200

Query: 172 AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231
                T++   +    ++  +++   + +  +    V  ++++  Y + G F+ A ++  
Sbjct: 201 VVSWTTMVAGLSKNGRVDAAREVFDKMPIRNV----VSWNAMIAGYAQNGRFDEALKLFE 256

Query: 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291
            M E D    + +++G+   G +N A ++F      + + W +M++GY+ +    EAL L
Sbjct: 257 RMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKL 316

Query: 292 FHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           F+KM+ N G+     T  +VL ACS L  L  G+Q+H    K    +   V SAL++ YS
Sbjct: 317 FNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYS 376

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT--MPNKSLISWNSMI 408
           K                               CG    AK +F      +  LI+WN MI
Sbjct: 377 K-------------------------------CGDFHVAKKMFDDGLSGHMDLIAWNGMI 405

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
              + +G   EA++LF  M +L  + +  +   +++AC++    + G + F
Sbjct: 406 AAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYF 456



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 39/312 (12%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD----FCLSALISGYANCGKMNDARRVF 261
           DS L +++++ Y KCG  N A ++ +    PD        +A++SGY    ++ +A R+F
Sbjct: 75  DSCLWTTMISGYIKCGLINEARKLFD---RPDAQKSVIVWTAMVSGYIKMNRIEEAERLF 131

Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM-RRN--------------GVLEDAST 306
           +     + V WN+MI GY  N    EAL LF +M  RN              G ++DA  
Sbjct: 132 NEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAER 191

Query: 307 L------------ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
           L             ++++  S  G ++  ++V         I +V+  +A++  Y++ G 
Sbjct: 192 LFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKM----PIRNVVSWNAMIAGYAQNGR 247

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             +A KLF  +   D    NTM+T +   G +  A+ +F  MP K++I+W +M+ G  Q+
Sbjct: 248 FDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQH 307

Query: 415 GSPIEALDLFCNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
           G   EAL LF  M   D L+    +  +V+ AC++++ L  G+Q+   ++         +
Sbjct: 308 GLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYV 367

Query: 474 STSLVDFYCKCG 485
            ++L++ Y KCG
Sbjct: 368 VSALINMYSKCG 379


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/559 (24%), Positives = 256/559 (45%), Gaps = 98/559 (17%)

Query: 1   MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-------TLP----------- 42
           +D    + A LL+ C + +++H   Q+H   +  G+L+        +LP           
Sbjct: 40  VDVYPSHFASLLKECKSANTVH---QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPR 96

Query: 43  -IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKS---------- 91
            +   ++  Y+ CG    ALL+ + +       WN +I   +K G  + +          
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 92  ------------LQLFNVMP-----------------QKNDFSWNMLISGFAKAGELKTA 122
                       L+    +P                 + N F  N L++ +++ G L+ A
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 123 RTLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL---QCDAFILA 176
             +F+++ +R   + I+WNS++  +V++  A  A+ LF ++   + E+    + D   + 
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            ++ AC  L A+   K++H + + NG   D  +G++L++ Y KCG   +A +V NMM+  
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 237 DDFCLSALISGYANCGKMNDARRVF----DRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
           D    +A+++GY+  G    A  +F            V W ++I+GY       EAL LF
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
            +M  +G L +  T+ SVLSAC+SLG    G ++H ++ K          + LL   +  
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK----------NCLLTLDNDF 446

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVG 410
           G   +           D ++ N +I +YS C   + A+ IF  +P   +++++W  MI G
Sbjct: 447 GGEDE-----------DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 495

Query: 411 LSQNGSPIEALDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL- 467
            +Q G   +AL LF  M      +  + ++++ ++ ACA+++++ +G+Q+ A V      
Sbjct: 496 HAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRY 555

Query: 468 -DSDQIISTSLVDFYCKCG 485
             S   ++  L+D Y KCG
Sbjct: 556 ESSAYFVANCLIDMYSKCG 574



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 187/399 (46%), Gaps = 65/399 (16%)

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
           + F  NA+I+ + K G  E ++++FN+M  K+  SWN +++G++++G  + A  LF +M 
Sbjct: 306 DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMR 365

Query: 131 RRN----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
           + N     + W ++I  Y + G + EA+ LF+++   +      +   + +V+ ACA L 
Sbjct: 366 KENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM---IFSGSLPNCVTIISVLSACASLG 422

Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
           A   G +IH++ L N L        +L N +G               ++ D    +ALI 
Sbjct: 423 AFSQGTEIHAYSLKNCL-------LTLDNDFGG--------------EDEDLMVYNALID 461

Query: 247 GYANCGKMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKM--RRNGVLE 302
            Y+ C     AR +FD     + + V W  MI G+    +  +AL LF +M     GV  
Sbjct: 462 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 521

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACK 360
           +A T++ +L AC+ L  +  GKQ+H +  +    +     VA+ L+D YSK         
Sbjct: 522 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSK--------- 572

Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
                                 CG ++ A+H+F +M  KS ISW SM+ G   +G   EA
Sbjct: 573 ----------------------CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 610

Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           LD+F  M K     D  +   V+ AC++   ++ G   F
Sbjct: 611 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYF 649



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/520 (22%), Positives = 208/520 (40%), Gaps = 171/520 (32%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLF 64
           +  +L +C +  ++   K++H       I N T P   + N L+  Y +CG   +A+ +F
Sbjct: 275 IVNILPACGSLKAVPQTKEVH----GNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVF 330

Query: 65  DEMPRRNCFSWN-----------------------------------AMIEGFMKLGHKE 89
           + M  ++  SWN                                   A+I G+ + G   
Sbjct: 331 NMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSH 390

Query: 90  KSLQLFNVM------PQ-----------------------------------KNDFS--- 105
           ++L LF  M      P                                     NDF    
Sbjct: 391 EALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGED 450

Query: 106 -----WNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFK 158
                +N LI  ++K    K AR++F+D+P   RN + W  MI  + + G + +A++LF 
Sbjct: 451 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 510

Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV--LGSSLVNL 216
           E+ S+    +  +A+ ++ ++ ACA LAA+  GKQIH+++L +     S   + + L+++
Sbjct: 511 EMISEPYG-VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDM 569

Query: 217 YGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMI 276
           Y KCGD ++A  V + M +      +++++GY   G+                       
Sbjct: 570 YSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR----------------------- 606

Query: 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG------------- 323
                    +EAL +F KMR+ G + D  T   VL ACS  G ++ G             
Sbjct: 607 --------GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGL 658

Query: 324 -KQVHGHACKVGVIDDVIVASALLDTYSK--RGMPSD-----------ACKLFSELKVYD 369
             +   +AC +    D++  S  LD   +  + MP +           AC++ S +++ +
Sbjct: 659 TPRAEHYACAI----DLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAE 714

Query: 370 TIL-----LN-------TMIT-VYSSCGRIEDAKHIFRTM 396
             L     +N       T+I+ +Y++ GR +D   I   M
Sbjct: 715 HALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLM 754



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 40/256 (15%)

Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
           + +++ Y  CG  + A  V +R T + +V WN +I  +I       A+ +  +M R G  
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
            D  TL  VL AC  L     G   HG  C  G   +V + +AL+  YS+          
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR---------- 209

Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL---ISWNSMIVGLSQNGSPI 418
                                CG +E+A  IF  +  + +   ISWNS++    ++ +  
Sbjct: 210 ---------------------CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAW 248

Query: 419 EALDLFCNMN------KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
            ALDLF  M         + R D  S+ +++ AC ++ ++   ++V       G   D  
Sbjct: 249 TALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVF 308

Query: 473 ISTSLVDFYCKCGFIK 488
           +  +L+D Y KCG ++
Sbjct: 309 VGNALIDAYAKCGLME 324



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 21/237 (8%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L +C    +I +GKQ+H + L+     S+   +AN L+ MY +CG+   A  +FD M +
Sbjct: 529 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ 588

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTL 125
           ++  SW +M+ G+   G   ++L +F+ M +     +D ++ +++   +  G +    + 
Sbjct: 589 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 648

Query: 126 FNDM-------PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
           F+ M       PR    A    I    R+G   +A R  K++       ++  A +   +
Sbjct: 649 FDSMSADYGLTPRAEHYA--CAIDLLARSGRLDKAWRTVKDMP------MEPTAVVWVAL 700

Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           + AC   + +E  +   + ++    + D    + + N+Y   G +    ++ ++MK+
Sbjct: 701 LSACRVHSNVELAEHALNKLVEMNAENDGSY-TLISNIYATAGRWKDVARIRHLMKK 756


>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Cucumis sativus]
          Length = 874

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 230/487 (47%), Gaps = 57/487 (11%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L+ C +  +I  G+Q+H   LK G  NS   I N L+ MY++CG  + A LLFD     +
Sbjct: 239 LKYCASSSAISSGQQIHAIVLKYG-FNSNTFILNSLINMYVKCGLLSSARLLFDSCSVLD 297

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR 131
             S N M+ G++KL   E + QLF  MP++   S+  +I G A+           ND   
Sbjct: 298 SVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQ-----------ND--- 343

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
                W              EA+ +FK++ S  V     +   +A+V+ AC+ +  +   
Sbjct: 344 ----CWG-------------EAIEVFKDMRSAGVAP---NEVTMASVMSACSHIGGIWNC 383

Query: 192 KQIHSHILVNGLDFDS--VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
           + +H+  LV  L F    ++ ++L+++Y          ++ N M   +    + ++ GY 
Sbjct: 384 RMLHA--LVIKLHFFGLVLISTNLLHMYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYV 441

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
             G ++ AR +F+R  +     W  MI G++      +ALLL+  MR++ +  +   +  
Sbjct: 442 KSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVD 501

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK----LFSEL 365
           +LSAC     +E G+Q H    K G +    + + ++  Y+       AC+     + + 
Sbjct: 502 LLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQATIISFYA-------ACRRIDLAYLQY 554

Query: 366 KVYDTILL---NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           ++ D   L   N MI  ++  G I+ A+ IF  MP K + SW++MI G +QN  P  ALD
Sbjct: 555 QMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALD 614

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQIISTSLVDF 480
           LF  M    +  ++ ++ SV SA A +  L  G      V   +I L+ +  +S +++D 
Sbjct: 615 LFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVIPLNDN--LSAAIIDM 672

Query: 481 YCKCGFI 487
           Y KCG I
Sbjct: 673 YAKCGSI 679



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 200/403 (49%), Gaps = 39/403 (9%)

Query: 93  QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
           +LFN MP +N  SWN+++ G+ K+G +  AR LF  +P R+  +W  MI  +V+    R+
Sbjct: 420 RLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQMKRLRK 479

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ L+  +       L  +  ++  ++ AC    ++E G+Q HS I+ NG      + ++
Sbjct: 480 ALLLYSAMRKS---DLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFIQAT 536

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           +++ Y  C   + A     M  +      + +I G+   G ++ AR++FD   +     W
Sbjct: 537 IISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSW 596

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC- 331
           ++MISGY  N     AL LFH M  + V  +  T+ SV SA ++LG L  G+  H + C 
Sbjct: 597 STMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAHEYVCN 656

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           KV  ++D + A A++D Y+K                               CG I+ A  
Sbjct: 657 KVIPLNDNLSA-AIIDMYAK-------------------------------CGSIDTALD 684

Query: 392 IFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
           +FR + +K  ++  WN++I GL+ +G    +L++F N+ +  ++++  +   V+SAC + 
Sbjct: 685 VFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHA 744

Query: 450 SSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
             +E+GE+ F  + T  G++ +      LVD   + G ++  E
Sbjct: 745 GLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAE 787



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 171/327 (52%), Gaps = 3/327 (0%)

Query: 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSAN 227
           L C+  ++ + +  CA  +A+  G+QIH+ +L  G + ++ + +SL+N+Y KCG  +SA 
Sbjct: 229 LDCELSVV-SALKYCASSSAISSGQQIHAIVLKYGFNSNTFILNSLINMYVKCGLLSSAR 287

Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
            + +     D    + ++SGY    ++ +AR++F +  +   V + +MI G   N+   E
Sbjct: 288 LLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGE 347

Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
           A+ +F  MR  GV  +  T+ASV+SACS +G + + + +H    K+     V++++ LL 
Sbjct: 348 AIEVFKDMRSAGVAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGLVLISTNLLH 407

Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSM 407
            Y       D  +LF+E+ V +T+  N M+  Y   G ++ A+ +F  +P + + SW  M
Sbjct: 408 MYCVFSSLKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIM 467

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I G  Q     +AL L+  M K DL  ++  +  ++SAC    S+E G Q  + +   G 
Sbjct: 468 IDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGF 527

Query: 468 DSDQIISTSLVDFYCKCGFIKMDEYYL 494
                I  +++ FY  C   ++D  YL
Sbjct: 528 VCFDFIQATIISFYAACR--RIDLAYL 552



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 67/314 (21%)

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
           S N++I GF K G +  AR +F+ MP ++  +W++MI  Y +N     A+ LF  +    
Sbjct: 564 SSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHGMIDSK 623

Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
           VE    +   + +V  A A L  L  G+  H ++                          
Sbjct: 624 VEP---NEITMVSVFSAIAALGKLPEGRWAHEYV-------------------------- 654

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM--WNSMISGYISN 282
             N+V+ +    +D   +A+I  YA CG ++ A  VF +  D +S +  WN++I G   +
Sbjct: 655 -CNKVIPL----NDNLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMH 709

Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA 342
                +L +F  ++R  +  ++ T   VLSAC   G +E G++                 
Sbjct: 710 GHANLSLEIFSNLQRRSIKLNSITFLGVLSACCHAGLVEVGERY---------------- 753

Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-L 401
                  ++ G+  +       +K Y       ++ +    GR+ +A+ I RTMP K+ +
Sbjct: 754 --FWSMKTQHGVEPN-------IKHY-----GCLVDLLGRVGRLREAEEIVRTMPMKADV 799

Query: 402 ISWNSMIVGLSQNG 415
           + W +++     +G
Sbjct: 800 VIWGTLLASSRTHG 813


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 140/530 (26%), Positives = 237/530 (44%), Gaps = 112/530 (21%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
            A ++  C +  +   G Q+  H +  G+ N  + +AN L+ M+   G   DA  LFD M
Sbjct: 148 FATVVSLCGSLENEVPGLQVASHVIVSGLQNQ-VSVANSLITMFGNLGRVQDAEKLFDRM 206

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN-------------------VMPQKNDFSW-- 106
              +  S NAMI  +   G   K   +F+                   V    + FS   
Sbjct: 207 EEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGS 266

Query: 107 ------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                             N L++ ++ AG+L  A  LF +M RR+ I+WN+MI  YV+N 
Sbjct: 267 GIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNC 326

Query: 149 FAREAVRLFKEL--NSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
            + +A++   +L   +++   L       ++ +GAC+   AL  GK +H+ +L   L  +
Sbjct: 327 NSTDALKTLGQLFHTNEIPNHL-----TFSSALGACSSPGALIDGKMVHAIVLQLSLQRN 381

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            ++G+SL+ +YGK                               C  M DA +VF     
Sbjct: 382 LLVGNSLITMYGK-------------------------------CNSMEDAEKVFQSMPT 410

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE-HGKQ 325
              V +N +I GY    + T+A+ +F  +R  G+  +  T+ ++  + +S   L  +G+ 
Sbjct: 411 HDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRP 470

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +H +  + G + D  VA                               N++IT+Y+ CG 
Sbjct: 471 LHAYIIRTGFLSDEYVA-------------------------------NSLITMYAKCGN 499

Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
           +E + +IF ++ NK+++SWN++I   +Q G   EAL LF +M     ++D+  LA  +S+
Sbjct: 500 LESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSS 559

Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
           CA+++SLE G Q+       GLDSD  +  + +D Y KCG  KM+E   M
Sbjct: 560 CASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCG--KMNEMLQM 607



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 165/372 (44%), Gaps = 65/372 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +   G +  AR LF +MP RN ++W +++     NG+  E +R ++++     E + C+A
Sbjct: 89  YGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRR---EGVPCNA 145

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
              ATV+  C  L     G Q+ SH++V+GL     + +SL+ ++G              
Sbjct: 146 NAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFG-------------- 191

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                            N G++ DA ++FDR  +  ++  N+MIS Y      ++  L+F
Sbjct: 192 -----------------NLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVF 234

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
             MR +G+  DA+TL S++S C+S     HG  +H    +  +   V V +AL++ YS  
Sbjct: 235 SDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAA 294

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
           G  SDA  LF  +   D I  NTMI+ Y                                
Sbjct: 295 GKLSDAEFLFWNMSRRDLISWNTMISSY-------------------------------V 323

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           QN +  +AL     +   +   +  + +S + AC++  +L  G+ V A V  + L  + +
Sbjct: 324 QNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLL 383

Query: 473 ISTSLVDFYCKC 484
           +  SL+  Y KC
Sbjct: 384 VGNSLITMYGKC 395



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 188/408 (46%), Gaps = 33/408 (8%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L  L+  C +      G  +H   L+   L+S++ + N L+ MY   G  +DA  LF  M
Sbjct: 249 LCSLMSVCASADHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNM 307

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSL----QLFNVMPQKNDFSWNMLISGFAKAGEL---K 120
            RR+  SWN MI  +++  +   +L    QLF+     N  +++  +   +  G L   K
Sbjct: 308 SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGK 367

Query: 121 TARTLFNDMP-RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
               +   +  +RN +  NS+I  Y +     +A ++F+ + +        D      +I
Sbjct: 368 MVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-------DVVSYNVLI 420

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---- 235
           G  A L       Q+ S I   G+  + +   +++N++G    F S+N + N  +     
Sbjct: 421 GGYAVLEDGTKAMQVFSWIRSAGIKPNYI---TMINIHG---SFTSSNDLHNYGRPLHAY 474

Query: 236 -------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
                   D++  ++LI+ YA CG +  +  +F+  T+ + V WN++I+         EA
Sbjct: 475 IIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEA 534

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L LF  M+  G   D   LA  LS+C+SL  LE G Q+HG   K G+  D  V +A +D 
Sbjct: 535 LKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDM 594

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
           Y K G  ++  ++  +  +      NT+I+ Y+  G  ++A+  F+ M
Sbjct: 595 YGKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQM 642



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 171/397 (43%), Gaps = 76/397 (19%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C++  ++  GK +H   L+   L   L + N L+ MY +C +  DA  +F  MP  +
Sbjct: 354 LGACSSPGALIDGKMVHAIVLQLS-LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHD 412

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFN------VMPQ------------------------- 100
             S+N +I G+  L    K++Q+F+      + P                          
Sbjct: 413 VVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLH 472

Query: 101 ---------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                     +++  N LI+ +AK G L+++  +FN +  +N ++WN++I    + G   
Sbjct: 473 AYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGE 532

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           EA++LF ++        + D   LA  + +CA LA+LE G Q+H   + +GLD DS + +
Sbjct: 533 EALKLFIDMQH---AGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVN 589

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           + +++YGK                               CGKMN+  ++           
Sbjct: 590 AAMDMYGK-------------------------------CGKMNEMLQMVPDQAIRPQQC 618

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH-A 330
           WN++ISGY       EA   F +M   G   D  T  ++LSACS  G ++ G   +   A
Sbjct: 619 WNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMA 678

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
              GV   +     ++D   + G  ++A +   E+ V
Sbjct: 679 SSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPV 715



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 148/367 (40%), Gaps = 68/367 (18%)

Query: 129 MPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA-- 186
           MP R    W + +   VR G    A  L + +    V       F LA+++ AC      
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVP---LSGFALASLVTACERRGRD 57

Query: 187 -ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
             +  G  IH+     GL  +  +G++L++LYG                           
Sbjct: 58  EGIACGAAIHALTHRAGLMGNVYIGTALLHLYG--------------------------- 90

Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
               + G ++DARR+F    + + V W +++    SN    E L  + +MRR GV  +A+
Sbjct: 91  ----SRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNAN 146

Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
             A+V+S C SL     G QV  H    G+ + V VA                       
Sbjct: 147 AFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVA----------------------- 183

Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
                   N++IT++ + GR++DA+ +F  M     IS N+MI   S  G   +   +F 
Sbjct: 184 --------NSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFS 235

Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +M    LR D  +L S++S CA+      G  + +      LDS   +  +LV+ Y   G
Sbjct: 236 DMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAG 295

Query: 486 FIKMDEY 492
            +   E+
Sbjct: 296 KLSDAEF 302


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 220/501 (43%), Gaps = 107/501 (21%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD-ALLLFDEMPRRNCFSWNAMIEGFMK 84
           QLH H LK     + + I    L MYM+C N +D +  LF+ +P  N  S+NA+I G+ +
Sbjct: 232 QLHGHALKTD-FGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYAR 290

Query: 85  LGHKEKSLQLFNVMP---------------------------------------QKNDFS 105
                ++L +F ++                                        Q N   
Sbjct: 291 SDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICV 350

Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
            N ++  + K G L  A  +F +M  R+A++WN++I  + +NG   + + LF  +   L 
Sbjct: 351 ANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM---LQ 407

Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
             ++ D F   +V+ ACA   AL  G +IH+ I+ + +  DS +G +L+++Y K      
Sbjct: 408 SGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSK------ 461

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
                                    CG M  A ++ DR  + + V WN++ISG+    + 
Sbjct: 462 -------------------------CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQS 496

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            EA   F KM   GV  D  T A++L  C++L  +E GKQ+H    K  +  D  ++S L
Sbjct: 497 EEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTL 556

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           +D YSK                               CG ++D + IF   PN+  ++WN
Sbjct: 557 VDMYSK-------------------------------CGNMQDFQLIFEKAPNRDFVTWN 585

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTI 464
           +M+ G +Q+G   EAL +F  M   +++ +  +  +V+ AC ++  +E G   F + ++ 
Sbjct: 586 AMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSN 645

Query: 465 IGLDSDQIISTSLVDFYCKCG 485
            GLD      + +VD   + G
Sbjct: 646 YGLDPQLEHYSCVVDIMGRSG 666



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/512 (24%), Positives = 215/512 (41%), Gaps = 105/512 (20%)

Query: 3   TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
           T+    + + Q C+   ++  GKQ H   +       T+ + N L+QMY++C +   A  
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTE-FKPTVFVTNCLIQMYIKCSDLGFAFK 98

Query: 63  LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122
           +FD MP+R+  SWNAM+ G                               +A  G++  A
Sbjct: 99  VFDGMPQRDTVSWNAMLFG-------------------------------YAGRGDIGVA 127

Query: 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
           + LF+ MP            C V   F     R+              D    A V+ +C
Sbjct: 128 QKLFDAMPGTG---------CGVVELFDFRMGRMGTVF----------DRTTFAVVLKSC 168

Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC----GDFNSANQVLNMMKEPD- 237
           + L     G QIH   +  G D D V GS+L+++Y KC     D     ++   M++   
Sbjct: 169 SSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGV 228

Query: 238 ------------DFCLSALISG-----YANCGKMND-ARRVFDRTTDTSSVMWNSMISGY 279
                       DF    +I       Y  C  ++D + ++F+   + +   +N++I GY
Sbjct: 229 GALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGY 288

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             +++  EAL +F  ++++G+  D  +L+    AC+ +     G QVHG + K     ++
Sbjct: 289 ARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNI 348

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            VA+A+LD Y K G   +AC +F E                               M ++
Sbjct: 349 CVANAILDMYGKCGALVEACLVFEE-------------------------------MVSR 377

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
             +SWN++I    QNG+  + L LF  M +  +  D+F+  SV+ ACA   +L  G ++ 
Sbjct: 378 DAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIH 437

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
            R+    +  D  +  +L+D Y KCG ++  E
Sbjct: 438 NRIIKSRMGLDSFVGIALIDMYSKCGMMEKAE 469



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 210/488 (43%), Gaps = 94/488 (19%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD----ALLL 63
            A +L+SC++      G Q+H   +K G  +  +   + LL MY +C    D     L L
Sbjct: 161 FAVVLKSCSSLEDHGGGIQIHGLAVKMG-FDCDVVTGSALLDMYAKCCVQNDDLRGGLEL 219

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG-----FAKAGE 118
           F EM +       A +      GH  K+           DF  +++I       + K   
Sbjct: 220 FKEMQK-------AGVGALQLHGHALKT-----------DFGTDVVIGTATLDMYMKCNN 261

Query: 119 LK-TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
           L   +  LFN +P  N  ++N++I  Y R+    EA+ +F+ L       L  D   L+ 
Sbjct: 262 LSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKS---GLGLDEVSLSG 318

Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
              ACA +     G Q+H      GL   S+  S++            AN +L+M     
Sbjct: 319 AXRACAVIKGDLEGLQVH------GLSMKSLCQSNIC----------VANAILDM----- 357

Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
                     Y  CG + +A  VF+      +V WN++I+ +  N  + + L LF  M +
Sbjct: 358 ----------YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQ 407

Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357
           +G+  D  T  SVL AC+    L  G ++H    K  +  D  V  AL+D YSK      
Sbjct: 408 SGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSK------ 461

Query: 358 ACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSP 417
                                    CG +E A+ +   +  ++++SWN++I G S     
Sbjct: 462 -------------------------CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQS 496

Query: 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477
            EA   F  M ++ +  D F+ A+++  CAN+ ++ELG+Q+ A++    L SD  IS++L
Sbjct: 497 EEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTL 556

Query: 478 VDFYCKCG 485
           VD Y KCG
Sbjct: 557 VDMYSKCG 564



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 180/406 (44%), Gaps = 76/406 (18%)

Query: 27  LHLHFLK-KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           L +H L  K +  S + +AN +L MY +CG   +A L+F+EM  R+  SWNA+I    + 
Sbjct: 333 LQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQN 392

Query: 86  GHKEKSLQLFNVMPQ----KNDFSWN---------------------------------- 107
           G++EK+L LF  M Q     ++F++                                   
Sbjct: 393 GNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVG 452

Query: 108 -MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
             LI  ++K G ++ A  L + +  +  ++WN++I  +     + EA + F ++   L  
Sbjct: 453 IALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM---LEM 509

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            +  D F  AT++  CA+L  +E GKQIH+ I+   L  D+ + S+LV++Y         
Sbjct: 510 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMY--------- 560

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
                                 + CG M D + +F++  +   V WN+M+ GY  +    
Sbjct: 561 ----------------------SKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGE 598

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASAL 345
           EAL +F  M+   V  + +T  +VL AC  +G +E G    H      G+   +   S +
Sbjct: 599 EALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCV 658

Query: 346 LDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAK 390
           +D   + G  S A +L   +    D ++  T+++     G +E A+
Sbjct: 659 VDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAE 704



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 111/235 (47%), Gaps = 17/235 (7%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
           A +L +C    ++ +GKQ+H   +KK  L S   I++ L+ MY +CGN  D  L+F++ P
Sbjct: 519 ATILDTCANLVTVELGKQIHAQIIKKE-LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP 577

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTART 124
            R+  +WNAM+ G+ + G  E++L++F  M     + N  ++  ++      G ++    
Sbjct: 578 NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLH 637

Query: 125 LFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
            F+ M     +      ++ ++    R+G   +A+ L + +        + DA I  T++
Sbjct: 638 YFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGM------PFEADAVIWRTLL 691

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
             C     +E  ++    IL    + DS     L N+Y   G +N   ++  MM+
Sbjct: 692 SXCKIHGNVEVAEKAAYSILQLEPE-DSAAYVLLSNIYANAGMWNEVTKLRKMMR 745


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/554 (22%), Positives = 230/554 (41%), Gaps = 143/554 (25%)

Query: 50  MYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND 103
           MY +CG+  DAL +F  +   N  SW  ++  F + GH  ++L  +  M      P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 104 FS----------------------------------WNMLISGFAKAGELKTARTLFNDM 129
           F                                      LI+ +A+  +L+ AR  F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 130 PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189
            ++  + WN++I  Y RNG  R A+++++++ S   E ++ DA   ++ + AC  +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249
            G++I +  + +G   DS++ ++L+N+Y K                              
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSK------------------------------ 210

Query: 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309
            CG +  AR+VFDR  +   + WN+MISGY      T+AL LF +M  N    +  T   
Sbjct: 211 -CGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIG 269

Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD---------------------- 347
           +L+AC++L  LE G+ +H    + G   D+++ + LL+                      
Sbjct: 270 LLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR 329

Query: 348 ----------TYSKRGMPSDACKLFSELKV------------------------------ 367
                      Y + G   DA  +F ++++                              
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVH 389

Query: 368 ---------YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
                     D +L N+++ +Y+ CG ++D   +F  + +KSL+SW+++I   +Q+G   
Sbjct: 390 ALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSR 449

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSL 477
             L+ F  + +  L  D  ++ S +SAC++   L+ G Q F + V   GL  D      +
Sbjct: 450 TGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCM 509

Query: 478 VDFYCKCGFIKMDE 491
           VD   + G ++  E
Sbjct: 510 VDLLSRAGRLEAAE 523



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/510 (23%), Positives = 202/510 (39%), Gaps = 147/510 (28%)

Query: 15  CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFS 74
           C++   +  G+ LH   L+  +L   + +   L+ MY RC +   A   FDEM ++   +
Sbjct: 68  CSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVT 127

Query: 75  WNAMIEGFMKLGHKEKSLQLFNVM---------PQKNDFS-------------------- 105
           WNA+I G+ + G    +L+++  M         P    FS                    
Sbjct: 128 WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEA 187

Query: 106 -------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                         N LI+ ++K G L++AR +F+ +  R+ IAWN+MI  Y + G A +
Sbjct: 188 RTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQ 247

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A+ LF+ +  +     + +      ++ AC +L  LE G+ IH  +  +G + D V+G+ 
Sbjct: 248 ALELFQRMGPN---DPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNV 304

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
           L+N+Y KC                                 + +AR+VF+R      + W
Sbjct: 305 LLNMYTKCSS------------------------------SLEEARQVFERMRTRDVITW 334

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG---- 328
           N +I  Y+   +  +AL +F +M+   V  +  TL++VLSAC+ LG    GK VH     
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS 394

Query: 329 HACKV---------------GVIDDVIVA------------SALLDTYSKRGMPSDACKL 361
             CK                G +DD +              S L+  Y++ G      + 
Sbjct: 395 GRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEH 454

Query: 362 FSEL-----KVYDTILLNT-----------------------------------MITVYS 381
           F EL        D  +++T                                   M+ + S
Sbjct: 455 FWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLS 514

Query: 382 SCGRIEDAKHIFRTMPN-KSLISWNSMIVG 410
             GR+E A+++   MP     ++W S++ G
Sbjct: 515 RAGRLEAAENLIHDMPFLPDAVAWTSLLSG 544



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 153/396 (38%), Gaps = 116/396 (29%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C     I  G+++    +  G  + ++ + N L+ MY +CG+   A  +FD +  R+
Sbjct: 170 LYACTVVGDISQGREIEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRD 228

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW--------------------- 106
             +WN MI G+ K G   ++L+LF  M    P+ N  ++                     
Sbjct: 229 VIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHR 288

Query: 107 --------------NMLISGFAK-AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                         N+L++ + K +  L+ AR +F  M  R+ I WN +I  YV+ G A+
Sbjct: 289 KVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAK 348

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI----------LVN 201
           +A+ +FK++    +E +  +   L+ V+ ACA L A   GK +H+ I          L N
Sbjct: 349 DALDIFKQMQ---LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 202 GL--------DFDSVLG-------------SSLVNLYGKCGDFNSA-NQVLNMMKE---P 236
            L          D  +G             S+L+  Y + G   +       +++E    
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAA 465

Query: 237 DDFCLSALISGYANCGKMNDARRVF----------------------------------- 261
           DD  + + +S  ++ G + +  + F                                   
Sbjct: 466 DDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENL 525

Query: 262 --DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
             D      +V W S++SG   +N+   A  +  K+
Sbjct: 526 IHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKL 561


>gi|449531597|ref|XP_004172772.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 680

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 143/560 (25%), Positives = 237/560 (42%), Gaps = 144/560 (25%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR----------- 53
           ++ +A+ L+ C T  +   G  +H +  K G LN    +AN L+ MY             
Sbjct: 3   VNIIAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVF-LANNLISMYAEFFNVRDAEKVF 61

Query: 54  --------------------CGNPTDALLLFDEMPRR---NCFSWNAMIEG--------- 81
                                G P +A+ L+++MP+    N + ++A+++          
Sbjct: 62  DEMTDRNIVTWTTMVSAFTDGGRPYEAIRLYNDMPKSETPNGYMYSAVLKACGFVGDLGL 121

Query: 82  --------------------------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115
                                     F+K G    ++++F+ + +    +WN+++SG++K
Sbjct: 122 GKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSGYSK 181

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQCDAFI 174
           AG +  A  LF+ MP  N ++WNSMI  +  NG  R       E  S + +R ++ D F 
Sbjct: 182 AGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGSQRAL-----EFVSMMHKRCIKLDDFT 236

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
               +   A    L  GKQ+HS++   G                                
Sbjct: 237 FPCALKISALHGLLFIGKQVHSYVTKLGY------------------------------- 265

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS------VMWNSMISGYISNNEDTEA 288
           E   F LSALI  Y+NC  + +A ++FD+ +  ++       +WNSM+SGY+ NN D  A
Sbjct: 266 ESSCFTLSALIDMYSNCNDLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAA 325

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L L  ++  +G L D+ T    L  C +L     G Q+HG     G   D +V S L+D 
Sbjct: 326 LNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDL 385

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K                                  I+DA  IF  +P K +I+W+ +I
Sbjct: 386 YAK-------------------------------LANIDDALAIFHRLPRKDIIAWSGLI 414

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           +G +Q G    A  +F  M +L   +D F +++++  C+N++SL  G+QV A     G +
Sbjct: 415 MGCAQIGLNWLAFSMFKGMLELVNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYE 474

Query: 469 SDQIISTSLVDFYCKCGFIK 488
            +    TSL+D Y KCG I+
Sbjct: 475 MEGFTITSLLDMYSKCGEIE 494



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/502 (23%), Positives = 192/502 (38%), Gaps = 112/502 (22%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           I  +T    N ++  Y + G   +A  LF  MP  N  SWN+MI GF   G  +++L+  
Sbjct: 164 ISRATTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNG-SQRALEFV 222

Query: 96  NVMPQK----NDFSW-----------------------------------NMLISGFAKA 116
           ++M ++    +DF++                                   + LI  ++  
Sbjct: 223 SMMHKRCIKLDDFTFPCALKISALHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNC 282

Query: 117 GELKTARTLFNDMPRRNA------IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
            +L  A  LF+     NA        WNSM+  YV N   + A+ L  E++         
Sbjct: 283 NDLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIH---CSGALL 339

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D++     +  C +L +   G Q+H  I+  G + D V+GS LV+LY K  +        
Sbjct: 340 DSYTFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLAN-------- 391

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                                  ++DA  +F R      + W+ +I G      +  A  
Sbjct: 392 -----------------------IDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWLAFS 428

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +F  M       D   ++++L  CS+L  L  GKQVH    K G   +    ++LLD YS
Sbjct: 429 MFKGMLELVNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYS 488

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K                               CG IEDA  +F     K ++SW  +IVG
Sbjct: 489 K-------------------------------CGEIEDALTLFCCEQEKDIVSWTGIIVG 517

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDS 469
             QNG   EA+  F  M +  +  ++ +   V+SAC     +E    +F  + ++ GL+ 
Sbjct: 518 CGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEP 577

Query: 470 DQIISTSLVDFYCKCGFIKMDE 491
                  +VD     G  +  E
Sbjct: 578 HLEHYCCMVDLLASVGLPEEAE 599



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 180/424 (42%), Gaps = 83/424 (19%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC----- 72
           H  + +GKQ+H +  K G  +S   ++  L+ MY  C +  +A+ LFD+    N      
Sbjct: 247 HGLLFIGKQVHSYVTKLGYESSCFTLS-ALIDMYSNCNDLIEAVKLFDQHSSFNASISDN 305

Query: 73  -FSWNAMIEGFMKLGHKEKSLQLF-----------------------NVMPQKNDFSWN- 107
              WN+M+ G++     + +L L                        N++ ++     + 
Sbjct: 306 LALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHG 365

Query: 108 ---------------MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                          +L+  +AK   +  A  +F+ +PR++ IAW+ +I    + G    
Sbjct: 366 LIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWL 425

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A  +FK +  +LV  +  D F+++T++  C++LA+L  GKQ+H+  + +G          
Sbjct: 426 AFSMFKGM-LELVNEI--DHFVISTILKVCSNLASLRSGKQVHALCVKSGY--------- 473

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                 E + F +++L+  Y+ CG++ DA  +F    +   V W
Sbjct: 474 ----------------------EMEGFTITSLLDMYSKCGEIEDALTLFCCEQEKDIVSW 511

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
             +I G   N +  EA+  FH+M R+G+  +  T   VLSAC   G +E  + +      
Sbjct: 512 TGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKS 571

Query: 333 V-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           V G+   +     ++D  +  G+P +A KL + +         T  T+  +CG   D K 
Sbjct: 572 VYGLEPHLEHYCCMVDLLASVGLPEEAEKLIANMPFEPN--QTTWRTLLGACGTRNDTKL 629

Query: 392 IFRT 395
           I R 
Sbjct: 630 INRV 633


>gi|144923518|gb|ABP02616.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 501

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 213/479 (44%), Gaps = 105/479 (21%)

Query: 24  GKQLH-LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
           GK LH   F  +   ++ +      +  +MR G+   AL +FD MP +N FSWN M+ G+
Sbjct: 9   GKHLHNFCFPVQKARDTYIVKCTNSISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGY 68

Query: 83  MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
           +K      +  LF++MPQK+  SWN+++SG+ ++G +  A+ +F++MP +++I+WN ++ 
Sbjct: 69  VKNRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLA 128

Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
            YV+NG   EA RLF+        ++  +      ++G       L   +++  H+ V  
Sbjct: 129 VYVQNGRLEEARRLFES-------KVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVR- 180

Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
              +++  +++++ Y + GD   A ++       D F  +A++  Y   G +++ARRVFD
Sbjct: 181 ---NAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVFD 237

Query: 263 RTTDTSSVM-------------------------------WNSMISGYISNNEDTEALLL 291
                  +                                WN++ISGY  N +  +A  L
Sbjct: 238 EMPGKREMAYNVMIAGYVQYKKMDMARELFEAMPCRNVGSWNTIISGYGQNGDIAQAREL 297

Query: 292 FH-------------------------------KMRRNGVLEDASTLASVLSACSSLGFL 320
           F                                KM+R+G   + ST    LS C+ +  L
Sbjct: 298 FDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAAL 357

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
             GKQVHG A K G  +  +V +ALL+ Y K                             
Sbjct: 358 VLGKQVHGQAVKTGYDNGCLVGNALLEMYCK----------------------------- 388

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
             CG I +A  +F  M  K +ISWN+M+ G +++G   +AL +F +M     + D+ ++
Sbjct: 389 --CGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEITM 445



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 193/410 (47%), Gaps = 52/410 (12%)

Query: 79  IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
           I   M+ GH   +L++F+ MP KN FSWN++++G+ K   L  AR LF+ MP+++A++WN
Sbjct: 34  ISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWN 93

Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
            M+  YVR+G                                 C D A L +    +   
Sbjct: 94  VMLSGYVRSG---------------------------------CVDEAKLVFDNMPYK-- 118

Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
                  DS+  + L+ +Y + G    A ++     + +    + L+ GY     + DAR
Sbjct: 119 -------DSISWNGLLAVYVQNGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDAR 171

Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318
           R+FD     +++ WN+MISGY  + +  +A  LF +      + D  T  +++ A    G
Sbjct: 172 RLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEE----SPVRDVFTWTAMVFAYVQSG 227

Query: 319 FLEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
            L+  ++V      K  +  +V++A  +   Y K  M   A +LF  +   +    NT+I
Sbjct: 228 MLDEARRVFDEMPGKREMAYNVMIAGYV--QYKKMDM---ARELFEAMPCRNVGSWNTII 282

Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
           + Y   G I  A+ +F  M  +  +SW ++I G +Q G   + + +   M +    +++ 
Sbjct: 283 SGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRS 342

Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
           +    +S CA +++L LG+QV  +    G D+  ++  +L++ YCKCG I
Sbjct: 343 TFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSI 392



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 12  LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
           L +C    ++ +GKQ+H   +K G  N  L + N LL+MY +CG+  +A  +F+ M  ++
Sbjct: 348 LSTCAGMAALVLGKQVHGQAVKTGYDNGCL-VGNALLEMYCKCGSIGEAYDVFERMQLKD 406

Query: 72  CFSWNAMIEGFMKLGHKEKSLQLFNVM 98
             SWN M+ G+ + G   ++L +F+ M
Sbjct: 407 IISWNTMLAGYARHGFGRQALLVFDSM 433



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 322 HGKQVHGHACKVGVIDDVIVASAL--LDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
            GK +H     V    D  +      + T+ + G    A ++F  +   +    N M+T 
Sbjct: 8   RGKHLHNFCFPVQKARDTYIVKCTNSISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTG 67

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
           Y    R+ DA+++F  MP K  +SWN M+ G  ++G   EA  +F NM   D
Sbjct: 68  YVKNRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKD 119


>gi|125526790|gb|EAY74904.1| hypothetical protein OsI_02796 [Oryza sativa Indica Group]
          Length = 616

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 142/554 (25%), Positives = 235/554 (42%), Gaps = 117/554 (21%)

Query: 9   ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP-IANRLLQMYMRCGNPTDALLLFDEM 67
           A LLQ C     +  G+Q+H   +K+G        I  +L   Y RCG   DA   F  +
Sbjct: 79  ASLLQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSAL 138

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-----PQKN-------------------- 102
           P +N F+W A+I  + + G   K+L  +  M     P  N                    
Sbjct: 139 PAKNAFAWAAVIGMWSRAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGLGLLAPGR 198

Query: 103 ---DFSW-----------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
               ++W           + L+  + K GE+  AR +F+ MP R  ++WNSM+  Y+ NG
Sbjct: 199 AVHGYAWKPGLGNCVYVMSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLMGYIHNG 258

Query: 149 FAREAVRLFKELNSD--LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
              EA  LF E+  +  L  R+   +F+ A+     ADL  L+ G+Q H+  + +GL+ D
Sbjct: 259 RIDEAADLFYEMRVEGVLPTRVSVLSFLSAS-----ADLEVLDGGRQGHAVAVSSGLEMD 313

Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
            +LGSS++N Y K G   +A  +                               F++  +
Sbjct: 314 LILGSSMINFYCKVGLVEAAEVI-------------------------------FEQMVE 342

Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
              V WN MISGY+ + +  +AL   H+M  +G+  D  TLASV+ AC     +E G   
Sbjct: 343 RDIVTWNLMISGYLQDGQTDKALTTCHRMLESGLKFDCVTLASVIMACVKSYRMEVGGAA 402

Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS----- 381
           H +A +  +  D  V  +L++ YS  G      ++F  ++  D      MI  Y+     
Sbjct: 403 HAYAVRNNLESDKTVFCSLIELYSSSGRIEQMRRVFDSIRRRDIATWKAMICAYADHGMG 462

Query: 382 -------------------SC-----------GRIEDAKHIFRTMPNKS----LISWNSM 407
                              +C           G+++DA   F  M   S    L +W+ +
Sbjct: 463 SEALKLLYQMQLEGTSPTAACWDSVLSAFIRNGQLDDALSTFYEMLQTSTRPNLRTWSLL 522

Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
           I GLS+NG   E ++L C M +++        ++ + A  + +S++ G+ + A +   GL
Sbjct: 523 ISGLSRNGMHPEVMNLCCKMQEVEPAPSPTIFSAALLAVKSAASVQYGKAMHACIVKKGL 582

Query: 468 DSDQIISTSLVDFY 481
              + +  SL++ Y
Sbjct: 583 LLSKSVVQSLLNMY 596



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 175/376 (46%), Gaps = 65/376 (17%)

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           +A+ G L  A   F+ +P +NA AW ++I  + R G   +A+  +  +   L   +  D 
Sbjct: 122 YARCGALGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALDGYAAM---LEAGVPADN 178

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
           F++  V+ ACA L  L  G+ +H +    GL     + SSLV+ YGK             
Sbjct: 179 FVVPNVLKACAGLGLLAPGRAVHGYAWKPGLGNCVYVMSSLVDFYGK------------- 225

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
                             CG+++DAR VFD   + + V WNSM+ GYI N    EA  LF
Sbjct: 226 ------------------CGEVDDAREVFDVMPERTVVSWNSMLMGYIHNGRIDEAADLF 267

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
           ++MR  GVL    ++ S LSA + L  L+ G+Q  GHA        V V+S L       
Sbjct: 268 YEMRVEGVLPTRVSVLSFLSASADLEVLDGGRQ--GHA--------VAVSSGL------- 310

Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
                      E+   D IL ++MI  Y   G +E A+ IF  M  + +++WN MI G  
Sbjct: 311 -----------EM---DLILGSSMINFYCKVGLVEAAEVIFEQMVERDIVTWNLMISGYL 356

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
           Q+G   +AL     M +  L+ D  +LASVI AC     +E+G    A      L+SD+ 
Sbjct: 357 QDGQTDKALTTCHRMLESGLKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKT 416

Query: 473 ISTSLVDFYCKCGFIK 488
           +  SL++ Y   G I+
Sbjct: 417 VFCSLIELYSSSGRIE 432



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 135/292 (46%), Gaps = 37/292 (12%)

Query: 211 SSLVNLYGKCGDFNSANQV-LNMMKEPDDFCLSALISG-----YANCGKMNDARRVFDRT 264
           +SL+      G   +  QV    +K    +C  A I       YA CG + DA R F   
Sbjct: 79  ASLLQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSAL 138

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
              ++  W ++I  +       +AL  +  M   GV  D   + +VL AC+ LG L  G+
Sbjct: 139 PAKNAFAWAAVIGMWSRAGLHGKALDGYAAMLEAGVPADNFVVPNVLKACAGLGLLAPGR 198

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
            VHG+A K G+ + V V S+L+D Y K                               CG
Sbjct: 199 AVHGYAWKPGLGNCVYVMSSLVDFYGK-------------------------------CG 227

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
            ++DA+ +F  MP ++++SWNSM++G   NG   EA DLF  M    +   + S+ S +S
Sbjct: 228 EVDDAREVFDVMPERTVVSWNSMLMGYIHNGRIDEAADLFYEMRVEGVLPTRVSVLSFLS 287

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           A A++  L+ G Q  A     GL+ D I+ +S+++FYCK G ++  E    Q
Sbjct: 288 ASADLEVLDGGRQGHAVAVSSGLEMDLILGSSMINFYCKVGLVEAAEVIFEQ 339



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 12/234 (5%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA ++ +C   + + VG   H + ++   L S   +   L+++Y   G       +FD +
Sbjct: 383 LASVIMACVKSYRMEVGGAAHAYAVRNN-LESDKTVFCSLIELYSSSGRIEQMRRVFDSI 441

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----WNMLISGFAKAGELKTAR 123
            RR+  +W AMI  +   G   ++L+L   M  +        W+ ++S F + G+L  A 
Sbjct: 442 RRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVLSAFIRNGQLDDAL 501

Query: 124 TLFNDM----PRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           + F +M     R N   W+ +I    RNG   E + L  ++    VE         A ++
Sbjct: 502 STFYEMLQTSTRPNLRTWSLLISGLSRNGMHPEVMNLCCKMQE--VEPAPSPTIFSAALL 559

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
            A    A+++YGK +H+ I+  GL     +  SL+N+YG   D  +   +L  +
Sbjct: 560 -AVKSAASVQYGKAMHACIVKKGLLLSKSVVQSLLNMYGSFNDRGTVESLLRFL 612


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 187/389 (48%), Gaps = 65/389 (16%)

Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
           Q N +  N LI  ++  G +  AR +F+ +  +  + WN++I  Y + G  +EA  LF++
Sbjct: 89  QLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQ 148

Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
           +   + E L+       +V+ AC+  A L +GK++H+ ++  G   D  +G++LV++   
Sbjct: 149 M---VDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSM--- 202

Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
                                       Y   G M+DAR+VFD         +N M+ GY
Sbjct: 203 ----------------------------YVKGGSMDDARQVFDGLHIRDVSTFNVMVGGY 234

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
             + +  +A  LF++M++ G+  +  +  S+L  C +   L  GK VH      G++DD+
Sbjct: 235 AKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDI 294

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            VA++L                               I +Y++CG IE A+ +F  M  +
Sbjct: 295 RVATSL-------------------------------IRMYTTCGSIEGARRVFDNMKVR 323

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
            ++SW  MI G ++NG+  +A  LF  M +  ++ D+ +   +++ACA  ++L    ++ 
Sbjct: 324 DVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIH 383

Query: 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
           ++V I G  +D ++ST+LV  Y KCG IK
Sbjct: 384 SQVDIAGFGTDLLVSTALVHMYAKCGAIK 412



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 220/529 (41%), Gaps = 116/529 (21%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C++   ++ GK++H   +  G + S   I   L+ MY++ G+  DA  +FD +  R
Sbjct: 164 VLDACSSPAGLNWGKEVHAQVVTAGFV-SDFRIGTALVSMYVKGGSMDDARQVFDGLHIR 222

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF-------------SWNM--- 108
           +  ++N M+ G+ K G  EK+ +LF  M      P K  F             +W     
Sbjct: 223 DVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVH 282

Query: 109 -----------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
                            LI  +   G ++ AR +F++M  R+ ++W  MI  Y  NG   
Sbjct: 283 AQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIE 342

Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
           +A  LF  +     E +Q D      ++ ACA  A L + ++IHS + + G   D ++ +
Sbjct: 343 DAFGLFATMQE---EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVST 399

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +LV++Y KCG    A QV + M   D    SA                            
Sbjct: 400 ALVHMYAKCGAIKDARQVFDAMPRRDVVSWSA---------------------------- 431

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
              MI  Y+ N   TEA   FH M+R+ +  D  T  ++L+AC  LG L+ G +++  A 
Sbjct: 432 ---MIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAI 488

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           K  ++  V + +AL+   +K G    A  +F  +   D I  N MI              
Sbjct: 489 KADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIG------------- 535

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             G S +G+  EAL LF  M K   R +  +   V+SAC+    
Sbjct: 536 ------------------GYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGF 577

Query: 452 LELGEQVFARVTIIGLDSDQIISTS-----LVDFYCKCGFIKMDEYYLM 495
           ++ G + F  +    L+   I+ T      +VD   + G  ++DE  L+
Sbjct: 578 VDEGRRFFTYL----LEGRGIVPTVKLYGCMVDLLGRAG--ELDEAELL 620



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/522 (22%), Positives = 217/522 (41%), Gaps = 105/522 (20%)

Query: 10  RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
           +L Q C       +GKQ+  H ++ G   +   + N L+++Y  CGN T+A  +FD +  
Sbjct: 62  KLFQRCTELRDAALGKQVRDHIIQGGRQLNIYEL-NTLIKLYSICGNVTEARQIFDSVEN 120

Query: 70  RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN-------------------DFSW---- 106
           +   +WNA+I G+ ++GH +++  LF  M  +                      +W    
Sbjct: 121 KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEV 180

Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
                             L+S + K G +  AR +F+ +  R+   +N M+  Y ++G  
Sbjct: 181 HAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDW 240

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
            +A  LF  +       L+ +     +++  C    AL +GK +H+  +  GL  D  + 
Sbjct: 241 EKAFELFYRMQQ---VGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVA 297

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
           +SL+ +Y  CG    A +V + MK  D    + +I GYA  G + D              
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIED-------------- 343

Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
                            A  LF  M+  G+  D  T   +++AC+    L H +++H   
Sbjct: 344 -----------------AFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV 386

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
              G   D++V++AL+  Y+K G   DA ++F                            
Sbjct: 387 DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFD--------------------------- 419

Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
                MP + ++SW++MI    +NG   EA + F  M + ++  D  +  ++++AC ++ 
Sbjct: 420 ----AMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLG 475

Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
           +L++G +++ +     L S   +  +L+    K G ++   Y
Sbjct: 476 ALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARY 517



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 192/453 (42%), Gaps = 106/453 (23%)

Query: 4   RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
           +I +L+ +L  C T  ++  GK +H   +  G+++  + +A  L++MY  CG+   A  +
Sbjct: 259 KISFLS-ILDGCWTPEALAWGKAVHAQCMNAGLVDD-IRVATSLIRMYTTCGSIEGARRV 316

Query: 64  FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN--------------------- 102
           FD M  R+  SW  MIEG+ + G+ E +  LF  M ++                      
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANL 376

Query: 103 -------------DFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
                         F  ++L+S      +AK G +K AR +F+ MPRR+ ++W++MI  Y
Sbjct: 377 NHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAY 436

Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
           V NG+  EA   F  +    +E    D      ++ AC  L AL+ G +I++  +   L 
Sbjct: 437 VENGYGTEAFETFHLMKRSNIE---PDGVTYINLLNACGHLGALDVGMEIYTQAIKADLV 493

Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
               LG++L+ +  K G    A  + + M   D    +A+I GY+  G   +A  +FDR 
Sbjct: 494 SHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDR- 552

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
                                    +L  + R N V     T   VLSACS  GF++ G+
Sbjct: 553 -------------------------MLKERFRPNSV-----TFVGVLSACSRAGFVDEGR 582

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +                      TY   G       +   +K+Y       M+ +    G
Sbjct: 583 RFF--------------------TYLLEGR-----GIVPTVKLY-----GCMVDLLGRAG 612

Query: 385 RIEDAKHIFRTMPNKSLIS-WNSMIVGLSQNGS 416
            +++A+ + ++MP K   S W+S++V    +G+
Sbjct: 613 ELDEAELLIKSMPVKPTSSIWSSLLVACRIHGN 645



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 38/284 (13%)

Query: 212 SLVNLYGKCGDFNSA-------NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
           + V L+ +C +   A       + ++   ++ + + L+ LI  Y+ CG + +AR++FD  
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118

Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
            + + V WN++I+GY       EA  LF +M   G+     T  SVL ACSS   L  GK
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGK 178

Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
           +VH      G + D  + +AL+  Y K G   DA ++F  L + D    N M+  Y+  G
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238

Query: 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444
             E                               +A +LF  M ++ L+ +K S  S++ 
Sbjct: 239 DWE-------------------------------KAFELFYRMQQVGLKPNKISFLSILD 267

Query: 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            C    +L  G+ V A+    GL  D  ++TSL+  Y  CG I+
Sbjct: 268 GCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIE 311


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 213/445 (47%), Gaps = 51/445 (11%)

Query: 51  YMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNML 109
           Y++CG   +A  LFD     +N  +W A++ G+++    E++ +LF+ MP KN  SWN +
Sbjct: 107 YIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTM 166

Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
           I G+A+ G +  A  LF  MP RN ++WN++I  +++     EA  LF  +     ER  
Sbjct: 167 IEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMP----ER-- 220

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D     T++   +    ++  + +   + V  +    V  ++++  Y +    + A ++
Sbjct: 221 -DVISWTTMVAGLSKNGRIDDARLLFDKMPVRNV----VSWNTMIIGYAQNMRLDEAFKL 275

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
              M E +    + +I+G+   GK+  A   F + ++ + V W ++ISG++ +    EAL
Sbjct: 276 FEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEAL 335

Query: 290 LLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
            +F +M+  N V  +  T  SVL ACS L  L  G+Q+H    K    +   V SAL++ 
Sbjct: 336 KIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINM 395

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR--TMPNKSLISWNS 406
           YSK                               CG +E A+ IF   ++ ++ ++SWN 
Sbjct: 396 YSK-------------------------------CGELELARKIFDDGSIGHRDVVSWNG 424

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF---ARVT 463
           MI   + +G   +A+ LF  M  L  R D  +  +++SAC++   ++ G ++F    R  
Sbjct: 425 MIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDR 484

Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
            I L  D    T LVD + + G ++
Sbjct: 485 SIKLREDHF--TCLVDLFGRAGRLQ 507



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 158/313 (50%), Gaps = 37/313 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N +++ Y R G    AL LF+ MP RN  SWN +I  FM+    +++ +LFN MP+++  
Sbjct: 164 NTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVI 223

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF-----KE 159
           SW  +++G +K G +  AR LF+ MP RN ++WN+MI  Y +N    EA +LF     +E
Sbjct: 224 SWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERE 283

Query: 160 LNS------------------DLVERLQCDAFILATVI--GACADLAALEYGK-----QI 194
           L+S                  D   ++     +  T +  G   D  + E  K     Q 
Sbjct: 284 LSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQA 343

Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALISGYANCG 252
            +++  N   F SVLG+    L   C +    +Q+++  + +E  D  +SALI+ Y+ CG
Sbjct: 344 ANNVKPNEGTFVSVLGAC-SKLAALC-EGQQIHQIISKTVYQEVAD-VVSALINMYSKCG 400

Query: 253 KMNDARRVFDRTT--DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
           ++  AR++FD  +      V WN MI+ Y  +    +A+ LF +M+  G   D  T  ++
Sbjct: 401 ELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIAL 460

Query: 311 LSACSSLGFLEHG 323
           LSACS  G ++ G
Sbjct: 461 LSACSHAGLVDEG 473



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 37/245 (15%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MP 68
           +L +C+   ++  G+Q+H   + K +      + + L+ MY +CG    A  +FD+  + 
Sbjct: 357 VLGACSKLAALCEGQQIH-QIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 69  RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTART 124
            R+  SWN MI  +   GH  K++ LF+ M     + ++ ++  L+S  + AG +     
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           LF ++ R  +I      +  ++  + R G  +EA    K L       ++  A + A ++
Sbjct: 476 LFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL------EVKPSASVWAALL 529

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVL-------GSSLV--NLYGKCGDFNSANQVL 230
             C           +H HI +  L  + +L       G+ LV  N+Y   G +  A  V 
Sbjct: 530 AGC----------NVHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVR 579

Query: 231 NMMKE 235
             MK+
Sbjct: 580 MKMKD 584


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 168/323 (52%), Gaps = 43/323 (13%)

Query: 53  RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG 112
           R G+  DA +LFD MP RN  SWNAMI G+ +    E++L LF  MP ++  SWN++I+G
Sbjct: 209 RNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITG 268

Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
           F +  +LK+AR LF++MP+RN I W +M++ Y++   +  A++LF   N  LV+ +Q + 
Sbjct: 269 FIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLF---NCMLVQGIQPNQ 325

Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
                 + AC++LAAL  G+Q+H  I      FD+ + S+L+NLY KCG+   A  V + 
Sbjct: 326 VTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDF 385

Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
             E D      LIS                         WN +I+ Y  +    EA+ L+
Sbjct: 386 SMEKD------LIS-------------------------WNGIIAAYAHHGFGIEAMHLY 414

Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVA-----SALLD 347
             M+ NG   + +T   +LSACS  G ++ G ++     K    D+ IV      + L+D
Sbjct: 415 KNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVK----DNSIVVRDEHYTCLVD 470

Query: 348 TYSKRGMPSDACKLFSELKVYDT 370
             S+ G   DA +L S  K+  T
Sbjct: 471 LCSRAGRLEDAKRLISWFKIKPT 493



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 183/413 (44%), Gaps = 73/413 (17%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           LL  Y R     +A  LF+ M  RN  SWN M+E +  +G  E +  LFN MP ++  SW
Sbjct: 110 LLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSW 169

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N+L+ G  ++G L+ AR +F  MP R+ ++W +MI    RNG   +A  LF         
Sbjct: 170 NILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLF--------- 220

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
               DA     V+                               +++++ Y +      A
Sbjct: 221 ----DAMPERNVVS-----------------------------WNAMISGYARNHRIEEA 247

Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
             +   M   D    + +I+G+     +  AR++FD     + + W +M++GY+   +  
Sbjct: 248 LDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSE 307

Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
            AL LF+ M   G+  +  T    L ACS+L  L  G+QVH   CK              
Sbjct: 308 MALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKT------------- 354

Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
                   PS           +DT + +T++ +Y+ CG I  A+++F     K LISWN 
Sbjct: 355 --------PSQ----------FDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNG 396

Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
           +I   + +G  IEA+ L+ NM +   + +  +   ++SAC++   ++ G ++F
Sbjct: 397 IIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIF 449



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 167/385 (43%), Gaps = 53/385 (13%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N  ++  A AG +  AR LF+ MP R+ ++W +M+  Y R G  +EA  LF   ++    
Sbjct: 45  NWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDAR--- 101

Query: 167 RLQCDAFILATVIGACADLAALEYGKQI-HSHILVNGLDFDSVLG-SSLVNLYGKCGDFN 224
                      V+   A L+     +++  +  L  G+   +V+  ++++  Y   G   
Sbjct: 102 ---------RNVVTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVE 152

Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
            A+ + N M   D    + L+ G    G +  AR++F+R      + W +MISG   N  
Sbjct: 153 DASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGS 212

Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
             +A +LF  M                                          +V+  +A
Sbjct: 213 VDDAWVLFDAMPER---------------------------------------NVVSWNA 233

Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
           ++  Y++     +A  LF+++ + D    N MIT +     ++ A+ +F  MP +++I+W
Sbjct: 234 MISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITW 293

Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464
            +M+ G  Q      AL LF  M    ++ ++ +    + AC+N+++L  G+QV   +  
Sbjct: 294 TTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICK 353

Query: 465 IGLDSDQIISTSLVDFYCKCGFIKM 489
                D  + ++L++ Y KCG I++
Sbjct: 354 TPSQFDTFVESTLMNLYAKCGEIRL 378



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 118/268 (44%), Gaps = 74/268 (27%)

Query: 60  ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM--------------------- 98
           A  LFDEMP+RN  +W  M+ G+++    E +L+LFN M                     
Sbjct: 278 ARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSN 337

Query: 99  -----------------PQKND-FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
                            P + D F  + L++ +AK GE++ AR +F+    ++ I+WN +
Sbjct: 338 LAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGI 397

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I  Y  +GF  EA+ L+K +  +  +    DA  +  ++ AC+    ++ G +I      
Sbjct: 398 IAAYAHHGFGIEAMHLYKNMQENGYK--PNDATYVG-LLSACSHAGLVDEGLKI------ 448

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
               F+S++  + +                 ++++    CL  L S     G++ DA+R+
Sbjct: 449 ----FESMVKDNSI-----------------VVRDEHYTCLVDLCS---RAGRLEDAKRL 484

Query: 261 FD--RTTDTSSVMWNSMISGYISNNEDT 286
               +   TSS +W++++ G  S+  ++
Sbjct: 485 ISWFKIKPTSSTVWSALLGGCNSHGNES 512


>gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 640

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 209/469 (44%), Gaps = 82/469 (17%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
           +H  ++L    L +G++  T      ++  Y R G  ++A  LFD MP R+  SW AM+ 
Sbjct: 116 VHRARRLFDGMLTRGVVAWTC-----MVDAYCRAGRVSEARELFDAMPERSVVSWTAMMH 170

Query: 81  GFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140
           G+ + G   ++ ++F+ MP++N  SW +++  +A  G  + A  LF+ MP+RN+ +WN++
Sbjct: 171 GYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRMPQRNSYSWNAV 230

Query: 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200
           I    R G   EAVRLF+ +                                  H ++  
Sbjct: 231 ISGSFRAGRVDEAVRLFERMP---------------------------------HRNV-- 255

Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRV 260
                  V  +++V    + G  + A +  ++M   D    +A+I+ YAN G+MN+ARR+
Sbjct: 256 -------VSWTAMVTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRL 308

Query: 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320
           FD       V WN++I GY       EA  LF  M R+    +++TL SVL    S+  +
Sbjct: 309 FDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEV 368

Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
               Q+HG A  +G++ +  + +ALL  YS+ G    A   F  L+  D I         
Sbjct: 369 ---VQIHGLATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEEKDAI--------- 416

Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
                                 +W SMI   + +G    AL  F  M +        +  
Sbjct: 417 ----------------------TWTSMIQAFANHGHASYALQAFAQMLEHGKNPSSTTFT 454

Query: 441 SVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIK 488
           +V+SAC++   +E G+ VF  +  + GL+      T L+D   + G ++
Sbjct: 455 AVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGNMR 503



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 145/311 (46%), Gaps = 17/311 (5%)

Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
           A ++   A    +   +++   +L  G+    V  + +V+ Y + G  + A ++ + M E
Sbjct: 104 AVMLAGYAKAGRVHRARRLFDGMLTRGV----VAWTCMVDAYCRAGRVSEARELFDAMPE 159

Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
                 +A++ GYA  G   +AR +FDR  + + V W  M+  Y       +A+ LF +M
Sbjct: 160 RSVVSWTAMMHGYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRM 219

Query: 296 -RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
            +RN    +A     V+S     G ++   ++           +V+  +A++   ++ G 
Sbjct: 220 PQRNSYSWNA-----VISGSFRAGRVDEAVRLFERMPH----RNVVSWTAMVTGLAQNGR 270

Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
            S A + F  +   D    N MIT Y++ G + +A+ +F +MP K L+SWN++I G ++ 
Sbjct: 271 VSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKK 330

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               EA  LF +M +     +  +L SV+    ++  +    Q+    T +GL S+  + 
Sbjct: 331 ELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEV---VQIHGLATTLGLLSETSLG 387

Query: 475 TSLVDFYCKCG 485
            +L+  Y + G
Sbjct: 388 NALLTMYSRIG 398



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 19/168 (11%)

Query: 26  QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
           Q+H      G+L+ T  + N LL MY R G+   A L F  +  ++  +W +MI+ F   
Sbjct: 370 QIHGLATTLGLLSET-SLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANH 428

Query: 86  GHKEKSLQLFNVM------PQKNDFSWNMLISGFAKAGELKTARTLFNDMP-----RRNA 134
           GH   +LQ F  M      P    F+   ++S  + AG ++  +++F  +       R  
Sbjct: 429 GHASYALQAFAQMLEHGKNPSSTTFT--AVLSACSHAGLVEEGKSVFRSIRHVYGLERTI 486

Query: 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
             +  +I    R G  REA+ +   +  D+     CD  IL T++GAC
Sbjct: 487 EHYTCLIDILGRAGNMREAMDVVNAMPPDI-----CDDAILRTLLGAC 529


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 188/390 (48%), Gaps = 52/390 (13%)

Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
           G++  AR LF+ +P  +  +WN M   Y R    +  V L+ E+   L   ++ D +   
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEM---LERNVKPDCYTYP 118

Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
            +        AL+ G+++H H++  GLD +    ++L+N+Y  CG  + A  + +M  + 
Sbjct: 119 FLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKS 178

Query: 237 DDFCLSALISGY-----------------ANCGKMNDARRVFDRTTDTSSVMWNSMISGY 279
           D    +A+ISGY                  N G+++ AR+ F +  +   V W +MI GY
Sbjct: 179 DVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGY 238

Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
           +  N   EAL+LF +M+ + +  D  T+ SVL+AC+ LG LE G+ +  +  K  V +D 
Sbjct: 239 LRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDT 298

Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
            V +AL+D Y K                               CG +E A  IF T+P +
Sbjct: 299 FVGNALIDMYFK-------------------------------CGNVEMALSIFNTLPQR 327

Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
              +W +M+VGL+ NG   EAL++F  M K  +  D+ +   V+SAC +   ++ G++ F
Sbjct: 328 DKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFF 387

Query: 460 ARVTII-GLDSDQIISTSLVDFYCKCGFIK 488
           A +T   G++ +      +VD   K G +K
Sbjct: 388 ASMTARHGIEPNIAHYGCMVDLLGKAGHLK 417



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 170/349 (48%), Gaps = 50/349 (14%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           ++ +G++LH H +K G L+S +   N L+ MY  CG    A  +FD   + +  +WNAMI
Sbjct: 129 ALQLGRELHCHVVKYG-LDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMI 187

Query: 80  EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
            G+ ++              +K+  SW  +++GF   G++  AR  F+ MP R+ ++W +
Sbjct: 188 SGYNRI--------------KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTA 233

Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
           MI  Y+R    +EA+ LF+E+ +    +++ D F + +V+ ACA L ALE G+ I ++I 
Sbjct: 234 MIDGYLRLNCYKEALMLFREMQTS---KIKPDEFTMVSVLTACAQLGALELGEWIRTYID 290

Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
            N +  D+ +G++L+++Y KCG+   A  + N + + D F                    
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKF-------------------- 330

Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
                       W +M+ G   N    EAL +F +M +  V  D  T   VLSAC+  G 
Sbjct: 331 -----------TWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGM 379

Query: 320 LEHGKQVHGH-ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           ++ GK+       + G+  ++     ++D   K G   +A ++   + +
Sbjct: 380 VDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPM 428



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 17/255 (6%)

Query: 252 GKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311
           G M  AR++FD   + S   WN M  GY         + L+ +M    V  D  T   + 
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121

Query: 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
              +    L+ G+++H H  K G+  +V   +AL++ YS  G+   A  +F      D +
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181

Query: 372 LLNTMITVYS-----------------SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
             N MI+ Y+                 + G+++ A+  F  MP +  +SW +MI G  + 
Sbjct: 182 TWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL 241

Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474
               EAL LF  M    ++ D+F++ SV++ACA + +LELGE +   +    + +D  + 
Sbjct: 242 NCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVG 301

Query: 475 TSLVDFYCKCGFIKM 489
            +L+D Y KCG ++M
Sbjct: 302 NALIDMYFKCGNVEM 316


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/428 (30%), Positives = 189/428 (44%), Gaps = 50/428 (11%)

Query: 45  NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
           N LL  Y+R G   +A  LFDEMP+RN  SWN M+ GF   G   K+L +F+ MP K+  
Sbjct: 130 NTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKDSA 189

Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKE 159
           S   L+SGF K G L  A  L     R   +     A+N++I  Y + G   +A RLF  
Sbjct: 190 SLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLF-- 247

Query: 160 LNSDLVER--LQCDA-----FILATVIGACADLAALEYGKQIHSHILVNGL-DFDSVLGS 211
              D++ R   QC       F    V         +  G    +  + N + D D V  +
Sbjct: 248 ---DMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWN 304

Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
           +++  Y K  D   A ++   M +PD    + +I G+   G +  AR  FDR  +  ++ 
Sbjct: 305 TMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTIS 364

Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
           WN+MISGY  N     A+ LF KM   G   D  T +SVL+AC+SL  L  G Q+H    
Sbjct: 365 WNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLH-QLI 423

Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           +   + D   ++AL+  YS+ G  +DA  +F ++   D +  N +I              
Sbjct: 424 EKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIG------------- 470

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
                             G   +G   EAL LF +M    +     +  S++SAC N   
Sbjct: 471 ------------------GYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGL 512

Query: 452 LELGEQVF 459
           +  G  VF
Sbjct: 513 VSEGWMVF 520



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 188/417 (45%), Gaps = 28/417 (6%)

Query: 95  FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE-- 152
           F+ +P ++  +WN  ++  A+  ++  AR  F  MP R+A++WN+++  Y R+  +    
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLA 112

Query: 153 -AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG- 210
            A RLF E+        Q DA    T++GA      +  G  + +  L + +   +V   
Sbjct: 113 AARRLFDEMP-------QRDAVTWNTLLGAY-----VRRGLMVEAEKLFDEMPQRNVASW 160

Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD---RTTDT 267
           +++V  +   G  N A  + + M   D   L  L+SG+   G++++A  +     R TD 
Sbjct: 161 NTMVTGFFSAGQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDM 220

Query: 268 SSVM--WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
              +  +N++I+ Y      ++A  LF  + R       + +        S   +     
Sbjct: 221 DEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYI 280

Query: 326 VHGHACKVGVI------DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
             G  C    I       D++  + ++  Y+K     +A KLF E+   D +  N +I  
Sbjct: 281 RTGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRG 340

Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
           ++  G +E A+  F  MP +  ISWN+MI G  QNG    A++LF  M +     D+ + 
Sbjct: 341 FTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTF 400

Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
           +SV++ACA++  L LG Q+   +    L  D   S +L+  Y + G +   E    Q
Sbjct: 401 SSVLAACASLPMLRLGAQLHQLIEKSFL-PDTATSNALMTMYSRGGALTDAEAIFKQ 456



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 162/393 (41%), Gaps = 81/393 (20%)

Query: 21  IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD--------------- 65
           +H  ++L    L+   ++  +   N L+  Y + G  +DA  LFD               
Sbjct: 204 LHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMR 263

Query: 66  ------------------------------EMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
                                         EMP ++  SWN MI G+ K+   E++ +LF
Sbjct: 264 VFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLF 323

Query: 96  NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155
             MP  +  SWN++I GF + G+++ AR  F+ MP R  I+WN+MI  Y +NG    A+ 
Sbjct: 324 WEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIE 383

Query: 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215
           LF ++   L      D    ++V+ ACA L  L  G Q+H  I  + L  D+   ++L+ 
Sbjct: 384 LFTKM---LEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIEKSFLP-DTATSNALMT 439

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           +Y + G    A  +   M + D    +ALI GY + G                       
Sbjct: 440 MYSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCA--------------------- 478

Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC-KVG 334
                     TEAL LF  MR   V+    T  S+LSAC + G +  G  V      +  
Sbjct: 479 ----------TEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYS 528

Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
           +   +   +AL++   + G   DA ++ + + +
Sbjct: 529 IAARIEHYAALVNLIGRHGQLDDALEVINSMPI 561



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 30/240 (12%)

Query: 11  LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
           +L +C +   + +G QLH   ++K  L  T   +N L+ MY R G  TDA  +F +MP++
Sbjct: 403 VLAACASLPMLRLGAQLH-QLIEKSFLPDTA-TSNALMTMYSRGGALTDAEAIFKQMPQK 460

Query: 71  NCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQKNDFSWNMLISGFAKAGELKTART 124
           +  SWNA+I G+   G   ++LQLF       VMP    F    L+S    AG +     
Sbjct: 461 DLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFI--SLLSACGNAGLVSEGWM 518

Query: 125 LFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
           +F+ M    +IA     + ++++   R+G   +A+ +   +       +  D  +    +
Sbjct: 519 VFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSMP------IAPDRSVWGAFL 572

Query: 180 GACADLAALEYGKQIHSHILVNGL---DFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKE 235
           GAC          ++ +H+    L   D +S     L+ NL+   G + SA+ V   M++
Sbjct: 573 GACT-----AKKNELLAHMAAKALSKIDPESSAPYVLIHNLHAHEGRWGSASVVREEMEQ 627


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 216/471 (45%), Gaps = 111/471 (23%)

Query: 20  SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
           S+ +G+Q+H   LK G L+  L ++N L+ MY +      A  +F+ M  R+  SWN++I
Sbjct: 337 SLALGQQVHCMALKLG-LDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVI 395

Query: 80  EG-------------FMKL---GHKEKSLQLFNVM------PQ----------------- 100
            G             FM+L   G K     + +V+      P+                 
Sbjct: 396 AGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNN 455

Query: 101 -KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN--AIAWNSMIHCYVRNGFAREAVRLF 157
             + F    LI  +++   +K A  LF    R N   +AWN+M+  Y ++    + + LF
Sbjct: 456 VADSFVSTALIDAYSRNRCMKEAEVLFG---RNNFDLVAWNAMMSGYTQSHDGHKTLELF 512

Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
             ++    +  + D F LATV+  C  L A+  GKQ+H++ + +G D D  + S ++++Y
Sbjct: 513 ALMHK---QGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMY 569

Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
            KCGD ++A    + +  PDD   + LISG   C                          
Sbjct: 570 VKCGDMSAAQFAFDSIPVPDDVAWTTLISG---C-------------------------- 600

Query: 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID 337
             I N E+  AL +F +MR  GVL D  T+A++  A S L  LE G+Q+H +A K+    
Sbjct: 601 --IENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTS 658

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D  V ++L+D Y+K                               CG I+DA  +F+ + 
Sbjct: 659 DPFVGTSLVDMYAK-------------------------------CGSIDDAYCLFKRIE 687

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
             ++ +WN+M+VGL+Q+G   EAL LF  M  L ++ DK +   V+SAC++
Sbjct: 688 MMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSH 738



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 225/487 (46%), Gaps = 77/487 (15%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           L+ +L+ C     +   +  H +  K G+      +A  L+ +Y++ G   +  +LF+EM
Sbjct: 155 LSPMLKLCLHSGYVCASESFHGYACKIGLDGDDF-VAGALVNIYLKFGKVKEGRVLFEEM 213

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNML--ISG-FAKAGELK 120
           P R+   WN M++ ++++G KE+++ L +         N+ +  +L  ISG  ++AG++K
Sbjct: 214 PYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVK 273

Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQCDAFILATVI 179
           +     +       I+ N ++  Y+  G     ++ F     D+VE  L+CD      V+
Sbjct: 274 SFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFM----DMVESDLECDQVTFILVL 329

Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
                L +L  G+Q+H   L  GLD    + +SL+N+Y K      A  V N M E D  
Sbjct: 330 ATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERD-- 387

Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
               LIS                         WNS+I+G   ++ + EA+ LF ++ R G
Sbjct: 388 ----LIS-------------------------WNSVIAGIAQSDLEVEAVCLFMQLLRCG 418

Query: 300 VLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
           +  D  T+ SVL A SSL   L   KQ+H HA K   + D  V++AL+D YS+     +A
Sbjct: 419 LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEA 478

Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
             LF                     GR            N  L++WN+M+ G +Q+    
Sbjct: 479 EVLF---------------------GR-----------NNFDLVAWNAMMSGYTQSHDGH 506

Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
           + L+LF  M+K   R D F+LA+V+  C  + ++  G+QV A     G D D  +S+ ++
Sbjct: 507 KTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGIL 566

Query: 479 DFYCKCG 485
           D Y KCG
Sbjct: 567 DMYVKCG 573



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 181/391 (46%), Gaps = 68/391 (17%)

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
           N LI+ + K  ++  ART+FN+M  R+ I+WNS+I    ++    EAV LF +L   L  
Sbjct: 361 NSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQL---LRC 417

Query: 167 RLQCDAFILATVIGACADLA-ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
            L+ D + + +V+ A + L   L   KQIH H +                          
Sbjct: 418 GLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAI-------------------------K 452

Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
            N V       D F  +ALI  Y+    M +A  +F R  +   V WN+M+SGY  +++ 
Sbjct: 453 TNNV------ADSFVSTALIDAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHDG 505

Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
            + L LF  M + G   D  TLA+VL  C  L  +  GKQVH +A K G   D+ V+S +
Sbjct: 506 HKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGI 565

Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
           LD Y K                               CG +  A+  F ++P    ++W 
Sbjct: 566 LDMYVK-------------------------------CGDMSAAQFAFDSIPVPDDVAWT 594

Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
           ++I G  +NG    AL +F  M  + +  D+F++A++  A + +++LE G Q+ A    +
Sbjct: 595 TLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKL 654

Query: 466 GLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
              SD  + TSLVD Y KCG I  D Y L +
Sbjct: 655 NCTSDPFVGTSLVDMYAKCGSID-DAYCLFK 684



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 143/311 (45%), Gaps = 47/311 (15%)

Query: 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSM 275
           + GKC    +  ++L + + P+ F ++ LIS Y+ CG +  ARRVFD+  +   V WNS+
Sbjct: 63  MLGKC----THARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSI 118

Query: 276 ISGYISNNEDT-----EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
           ++ Y  ++E       EA LLF  +R++ V     TL+ +L  C   G++   +  HG+A
Sbjct: 119 LAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYA 178

Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
           CK+G+  D  VA AL++ Y K G   +   LF E+   D +L N M+  Y   G  E+A 
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 238

Query: 391 ------HIFRTMPNK--------------------------------SLISWNSMIVGLS 412
                 H     PN+                                 +IS N ++ G  
Sbjct: 239 DLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYL 298

Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
             G     L  F +M + DL  D+ +   V++    + SL LG+QV      +GLD    
Sbjct: 299 HAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLT 358

Query: 473 ISTSLVDFYCK 483
           +S SL++ YCK
Sbjct: 359 VSNSLINMYCK 369



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 180/429 (41%), Gaps = 80/429 (18%)

Query: 99  PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA-----REA 153
           P++  F  N LIS ++K G L  AR +F+ MP R+ ++WNS++  Y ++        +EA
Sbjct: 79  PER--FLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEA 136

Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
             LF+ L  D+V         L+ ++  C     +   +  H +    GLD D  +  +L
Sbjct: 137 FLLFRILRQDVV---YTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGAL 193

Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA---------------- 257
           VN+Y K G       +   M   D    + ++  Y   G   +A                
Sbjct: 194 VNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNE 253

Query: 258 ------------------RRVFDRTTDTSSVM----WNSMISGYISNNEDTEALLLFHKM 295
                              + F+   D S+V      N ++SGY+   + +  L  F  M
Sbjct: 254 ITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDM 313

Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
             + +  D  T   VL+    L  L  G+QVH  A K+G +D ++  S            
Sbjct: 314 VESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLG-LDLMLTVS------------ 360

Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
                             N++I +Y    +I  A+ +F  M  + LISWNS+I G++Q+ 
Sbjct: 361 ------------------NSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSD 402

Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISS-LELGEQVFARVTIIGLDSDQIIS 474
             +EA+ LF  + +  L+ D +++ SV+ A +++   L L +Q+          +D  +S
Sbjct: 403 LEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS 462

Query: 475 TSLVDFYCK 483
           T+L+D Y +
Sbjct: 463 TALIDAYSR 471



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 44/266 (16%)

Query: 8   LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
           LA +L++C    +I+ GKQ+H + +K G  +  L +++ +L MY++CG+ + A   FD +
Sbjct: 527 LATVLKTCGFLFAINQGKQVHAYAIKSG-YDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 585

Query: 68  PRRNCFSWNAMIEGFMKLGHKEKSLQLFN------VMPQK-------------------- 101
           P  +  +W  +I G ++ G +E++L +F+      V+P +                    
Sbjct: 586 PVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 645

Query: 102 -------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
                        + F    L+  +AK G +  A  LF  +   N  AWN+M+    ++G
Sbjct: 646 QIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHG 705

Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL-EYGKQIHSHILVNGLDFDS 207
             +EA++LFK++ S     ++ D      V+ AC+    + E  K I S     G+  + 
Sbjct: 706 EGKEALQLFKQMES---LGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEI 762

Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMM 233
              S L +  G+ G    A  +++ M
Sbjct: 763 EHYSCLADALGRAGLVKEAENLIDSM 788



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 5/125 (4%)

Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI-----EALDL 423
           +  L+N +I++YS CG +  A+ +F  MP + L+SWNS++   +Q+   +     EA  L
Sbjct: 80  ERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLL 139

Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
           F  + +  +   + +L+ ++  C +   +   E        IGLD D  ++ +LV+ Y K
Sbjct: 140 FRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLK 199

Query: 484 CGFIK 488
            G +K
Sbjct: 200 FGKVK 204


>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 204/430 (47%), Gaps = 34/430 (7%)

Query: 55  GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
           G    ALLL   +      S N +IE +  L     S   F  +P +N  S+N L++  +
Sbjct: 51  GRAAHALLLKTALNHHTLLS-NRLIELYAMLNSPAASRTAFEDLPYRNAHSYNNLLAALS 109

Query: 115 K-AGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD--LVERLQ 169
           + +  L  A  L + MP   RN +++N++I    RNG   EA+R+F  L  D  L   + 
Sbjct: 110 RGSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVA 169

Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
            D F + +V  ACA + AL   +++H  ++V+G++   ++ +++V+ Y K G    A  +
Sbjct: 170 LDRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTL 229

Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
            N M   D    +++I+GY    ++++A RVF    +  ++ W ++ISG+  N E+  AL
Sbjct: 230 FNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAAL 289

Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
            LF +M   G+      L S L AC+ LG +  G++VHG   +  +              
Sbjct: 290 DLFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRI-------------- 335

Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
                          L  ++  + N +I +YS CG +  A  +F  M  +  ISWNSM+ 
Sbjct: 336 --------------GLDPFNIFIHNALIDMYSKCGDMATAMLVFARMSERDFISWNSMVT 381

Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS 469
           G S NG   ++L +F  M   +++    +  +V++AC++   +  G ++   +   G++ 
Sbjct: 382 GFSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACSHAGLVTDGRRILESMQYHGVEP 441

Query: 470 DQIISTSLVD 479
                 S +D
Sbjct: 442 RAEHYASFID 451



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 189/383 (49%), Gaps = 40/383 (10%)

Query: 22  HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           ++G+  H   LK  + + TL ++NRL+++Y    +P  +   F+++P RN  S+N ++  
Sbjct: 49  YLGRAAHALLLKTALNHHTL-LSNRLIELYAMLNSPAASRTAFEDLPYRNAHSYNNLLAA 107

Query: 82  FMKLGHK-EKSLQLFNVMP--QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
             +       +L L + MP   +N  S+N +IS  A                        
Sbjct: 108 LSRGSATLPDALHLLDAMPASSRNVVSYNTIISALA------------------------ 143

Query: 139 SMIHCYVRNGFAREAVRLFKELNSD--LVERLQCDAFILATVIGACADLAALEYGKQIHS 196
                  RNG   EA+R+F  L  D  L   +  D F + +V  ACA + AL   +++H 
Sbjct: 144 -------RNGRQGEALRVFARLARDRCLGPEVALDRFAVVSVASACAGMGALRPLREMHG 196

Query: 197 HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMND 256
            ++V+G++   ++ +++V+ Y K G    A  + N M   D    +++I+GY    ++++
Sbjct: 197 AVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLFNQMSIQDTVSWTSMIAGYCRAKRLDE 256

Query: 257 ARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
           A RVF    +  ++ W ++ISG+  N E+  AL LF +M   G+      L S L AC+ 
Sbjct: 257 AIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTPFALVSSLGACAK 316

Query: 317 LGFLEHGKQVHGHACKVGVIDD---VIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
           LG +  G++VHG   +  +  D   + + +AL+D YSK G  + A  +F+ +   D I  
Sbjct: 317 LGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFARMSERDFISW 376

Query: 374 NTMITVYSSCGRIEDAKHIFRTM 396
           N+M+T +S  G+ + +  +F+ M
Sbjct: 377 NSMVTGFSHNGQGKQSLAMFKRM 399



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 151/306 (49%), Gaps = 11/306 (3%)

Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA- 249
           G+  H+ +L   L+  ++L + L+ LY       ++      +   +    + L++  + 
Sbjct: 51  GRAAHALLLKTALNHHTLLSNRLIELYAMLNSPAASRTAFEDLPYRNAHSYNNLLAALSR 110

Query: 250 NCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNEDTEALLLFHKMRRNGVLE----- 302
               + DA  + D    +S   V +N++IS    N    EAL +F ++ R+  L      
Sbjct: 111 GSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVAL 170

Query: 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLF 362
           D   + SV SAC+ +G L   +++HG     GV   VI+A+A++D YSK G   DA  LF
Sbjct: 171 DRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLF 230

Query: 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422
           +++ + DT+   +MI  Y    R+++A  +F  MP +  I+W ++I G  QNG    ALD
Sbjct: 231 NQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALD 290

Query: 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQV--FARVTIIGLDSDQI-ISTSLVD 479
           LF  M    +    F+L S + ACA +  +  G +V  F     IGLD   I I  +L+D
Sbjct: 291 LFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALID 350

Query: 480 FYCKCG 485
            Y KCG
Sbjct: 351 MYSKCG 356



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 160/364 (43%), Gaps = 69/364 (18%)

Query: 76  NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
           NAM++ + K G  E +  LFN M  ++  SW  +I+G+ +A  L  A  +F+ MP ++ I
Sbjct: 211 NAMVDAYSKAGRMEDARTLFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTI 270

Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
           AW ++I  + +NG    A+ LF+++   LVE +    F L + +GACA L  +  G+++H
Sbjct: 271 AWTALISGHEQNGEEDAALDLFQQM---LVEGMAPTPFALVSSLGACAKLGLVTRGREVH 327

Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
             IL   +  D                FN              F  +ALI  Y+ CG M 
Sbjct: 328 GFILRRRIGLDP---------------FNI-------------FIHNALIDMYSKCGDMA 359

Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
            A  VF R ++   + WNSM++G+  N +  ++L +F +M    V     T  +VL+ACS
Sbjct: 360 TAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACS 419

Query: 316 SLGFLEHGK------QVHGHACK----------VGVIDDVIVASALLDTYSKRGMPSD-- 357
             G +  G+      Q HG   +          +G    +  AS  +   S R  P    
Sbjct: 420 HAGLVTDGRRILESMQYHGVEPRAEHYASFIDALGRNHQLEEASEFIKGLSSRIGPGTTG 479

Query: 358 -------ACKLFSELKVYDTILLN-------------TMITVYSSCGRIEDAKHIFRTMP 397
                  AC++    ++ + +  +              +  +Y++ G+ +DA+ I   M 
Sbjct: 480 SWGALLGACRVHGNTEIAEKVAESLFQLEPGNSGRYVMLSNIYAAAGQWDDARRIRAIMK 539

Query: 398 NKSL 401
            K L
Sbjct: 540 EKGL 543



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 28/229 (12%)

Query: 24  GKQLHLHFLKK--GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81
           G+++H   L++  G+    + I N L+ MY +CG+   A+L+F  M  R+  SWN+M+ G
Sbjct: 323 GREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFARMSERDFISWNSMVTG 382

Query: 82  FMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTLFNDM------PR 131
           F   G  ++SL +F  M     Q    ++  +++  + AG +   R +   M      PR
Sbjct: 383 FSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACSHAGLVTDGRRILESMQYHGVEPR 442

Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
             A  + S I    RN    EA    K L+S +             ++GAC      E  
Sbjct: 443 --AEHYASFIDALGRNHQLEEASEFIKGLSSRIGPGTTGS---WGALLGACRVHGNTEIA 497

Query: 192 KQIHSHILVNGLDFDSVLGSS-----LVNLYGKCGDFNSANQVLNMMKE 235
           +++   +      F    G+S     L N+Y   G ++ A ++  +MKE
Sbjct: 498 EKVAESL------FQLEPGNSGRYVMLSNIYAAAGQWDDARRIRAIMKE 540


>gi|302819822|ref|XP_002991580.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
 gi|300140613|gb|EFJ07334.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
          Length = 560

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 210/422 (49%), Gaps = 25/422 (5%)

Query: 74  SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN 133
           SW AMI+ + + GH  +++++F ++P+++  +   ++  +A+   L+ ++ +F+ +P R+
Sbjct: 4   SWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIPERD 63

Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
            ++W +++     NG   E + +F  +        +C      T++ A +D   LE  K 
Sbjct: 64  PVSWTALLSVNATNGHLVEVINIFDRMPK---RSWRC----WQTMLSAYSDHGDLENTKL 116

Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
             + +   G    SV  ++L+  Y + G   SA +  + M + D    + +   YA  G 
Sbjct: 117 TFATMPYRG----SVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGH 172

Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
           + ++R  FD   D   V WNS++S Y       +A  +F  + R  V     +  ++++A
Sbjct: 173 IQESRWFFDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGILRPNVF----SWNTMIAA 228

Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
            +  G  +  ++V G   +     +V+  + LL  YS+RGM  +A ++F  +   D I  
Sbjct: 229 YTQNGHFDEARRVFGEMPR----KNVVSWNTLLAAYSERGMLCEAKEMFDRMPQKDVISW 284

Query: 374 NTMITVYSSCG---RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
           N+++T Y+  G   R+  A+ IF TM  + LISWN+MI   +Q+G   E + LF  M+  
Sbjct: 285 NSLVTAYAQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLY 344

Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARV---TIIGLDSDQIISTSLVDFYCKCGFI 487
               D  +L +V+ AC    SLE G+ + A +   T + L +  ++ T+LV+ Y   G +
Sbjct: 345 GEAPDSITLIAVLDACTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGNLGCV 404

Query: 488 KM 489
           ++
Sbjct: 405 EL 406



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 205/439 (46%), Gaps = 47/439 (10%)

Query: 47  LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW 106
           +L  Y   G+  +  L F  MP R   SWNA++  + + GH E + + F+ MPQ +  SW
Sbjct: 101 MLSAYSDHGDLENTKLTFATMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSW 160

Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
            ++   +A+ G ++ +R  F+++P R+ ++WNS++  Y R     +A R+F+ +      
Sbjct: 161 TIVSEAYAQRGHIQESRWFFDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGI------ 214

Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
            L+ + F   T+I A       +  +++   +    +    V  ++L+  Y + G    A
Sbjct: 215 -LRPNVFSWNTMIAAYTQNGHFDEARRVFGEMPRKNV----VSWNTLLAAYSERGMLCEA 269

Query: 227 NQVLNMMKEPDDFCLSALISGYANCG---KMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
            ++ + M + D    ++L++ YA  G   ++  AR +FD   +   + WN+MI+ Y  + 
Sbjct: 270 KEMFDRMPQKDVISWNSLVTAYAQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSG 329

Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
           +  E + LF  M   G   D+ TL +VL AC++   LE GK +H            I A 
Sbjct: 330 DGEEGIHLFRIMDLYGEAPDSITLIAVLDACTAARSLERGKTIHA----------AIRAG 379

Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
             LD             L + L     ++L  ++ +Y + G +E A   F+ +  + + +
Sbjct: 380 TRLD-------------LTTHL-----LVLTALVNMYGNLGCVELAMEAFQGIQRRDVTA 421

Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
           W ++IV  ++NG    AL+LF       ++ D  +  S+++AC++   L  G   F    
Sbjct: 422 WTAVIVAHARNGHGGAALELFREFGLEGMQPDAVAFLSILTACSHAGLLYSGRDFF---- 477

Query: 464 IIGLDSDQIISTSLVDFYC 482
            + L  D  +  +L  + C
Sbjct: 478 -VALHGDYNVGVTLEHYRC 495



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 168/391 (42%), Gaps = 75/391 (19%)

Query: 34  KGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93
           +GIL   +   N ++  Y + G+  +A  +F EMPR+N  SWN ++  + + G   ++ +
Sbjct: 212 EGILRPNVFSWNTMIAAYTQNGHFDEARRVFGEMPRKNVVSWNTLLAAYSERGMLCEAKE 271

Query: 94  LFNVMPQKNDFSWNMLISGFAKAGEL---KTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
           +F+ MPQK+  SWN L++ +A+ G +     AR +F+ M  R+ I+WN+MI  Y ++G  
Sbjct: 272 MFDRMPQKDVISWNSLVTAYAQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDG 331

Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVL 209
            E + LF+ +  DL      D+  L  V+ AC    +LE GK IH+ I     LD  + L
Sbjct: 332 EEGIHLFRIM--DLYGEAP-DSITLIAVLDACTAARSLERGKTIHAAIRAGTRLDLTTHL 388

Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
                                          L+AL++ Y N G +  A   F        
Sbjct: 389 -----------------------------LVLTALVNMYGNLGCVELAMEAFQGIQRRDV 419

Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ---- 325
             W ++I  +  N     AL LF +    G+  DA    S+L+ACS  G L  G+     
Sbjct: 420 TAWTAVIVAHARNGHGGAALELFREFGLEGMQPDAVAFLSILTACSHAGLLYSGRDFFVA 479

Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
           +HG    VGV          L+ Y                          +I +    G+
Sbjct: 480 LHGD-YNVGVT---------LEHY------------------------RCVIDMLGRLGQ 505

Query: 386 IEDAKHIFRTMPNKS-LISWNSMIVGLSQNG 415
           +E A+ + R MP K+  +SW +++      G
Sbjct: 506 LELAEEVIRGMPFKADFVSWVTLLGACKTQG 536



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/334 (20%), Positives = 140/334 (41%), Gaps = 59/334 (17%)

Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
           D V   +++  Y + G F  A ++  ++ E     +++++  YA    +  ++ +FDR  
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIP 60

Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRR---------------NGVLEDAS-TLAS 309
           +   V W +++S   +N    E + +F +M +               +G LE+   T A+
Sbjct: 61  ERDPVSWTALLSVNATNGHLVEVINIFDRMPKRSWRCWQTMLSAYSDHGDLENTKLTFAT 120

Query: 310 -----------VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-------------- 344
                      +L A +  G LE  K+      +   +   IV+ A              
Sbjct: 121 MPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGHIQESRWFF 180

Query: 345 -------------LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
                        ++  Y++R +  DA ++F  +   +    NTMI  Y+  G  ++A+ 
Sbjct: 181 DNVPDRDLVSWNSIMSAYARRALIDDARRVFEGILRPNVFSWNTMIAAYTQNGHFDEARR 240

Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
           +F  MP K+++SWN+++   S+ G   EA ++F  M + D+ +   SL +  +   +I  
Sbjct: 241 VFGEMPRKNVVSWNTLLAAYSERGMLCEAKEMFDRMPQKDV-ISWNSLVTAYAQNGHILR 299

Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
           +    ++F  +     + D I   +++  Y + G
Sbjct: 300 VAAAREIFDTMR----ERDLISWNTMIAAYAQSG 329



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
           D +   A++  Y++ G   +A ++F  +    T+ + +M+  Y+    +E +K +F  +P
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIP 60

Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
            +  +SW +++   + NG  +E +++F  M K   R       +++SA ++   LE  + 
Sbjct: 61  ERDPVSWTALLSVNATNGHLVEVINIFDRMPKRSWR----CWQTMLSAYSDHGDLENTKL 116

Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
            FA +   G     +   +L+  Y + G ++
Sbjct: 117 TFATMPYRG----SVSWNALLGAYAQTGHLE 143


>gi|449445246|ref|XP_004140384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 688

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 143/560 (25%), Positives = 237/560 (42%), Gaps = 144/560 (25%)

Query: 5   IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR----------- 53
           ++ +A+ L+ C T  +   G  +H +  K G LN    +AN L+ MY             
Sbjct: 3   VNIIAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVF-LANNLISMYAEFFNVRDAEKVF 61

Query: 54  --------------------CGNPTDALLLFDEMPRR---NCFSWNAMIEG--------- 81
                                G P +A+ L+++MP+    N + ++A+++          
Sbjct: 62  DEMTDRNIVTWTTMVSAFTDGGRPYEAIRLYNDMPKSETPNGYMYSAVLKACGFVGDLGL 121

Query: 82  --------------------------FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115
                                     F+K G    ++++F+ + +    +WN+++SG++K
Sbjct: 122 GKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSGYSK 181

Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQCDAFI 174
           AG +  A  LF+ MP  N ++WNSMI  +  NG  R       E  S + +R ++ D F 
Sbjct: 182 AGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGSQRAL-----EFVSMMHKRCIKLDDFT 236

Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
               +   A    L  GKQ+HS++   G                                
Sbjct: 237 FPCALKISALHGLLFIGKQVHSYVTKLGY------------------------------- 265

Query: 235 EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS------VMWNSMISGYISNNEDTEA 288
           E   F LSALI  Y+NC  + +A ++FD+ +  ++       +WNSM+SGY+ NN D  A
Sbjct: 266 ESSCFTLSALIDMYSNCNDLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAA 325

Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348
           L L  ++  +G L D+ T    L  C +L     G Q+HG     G   D +V S L+D 
Sbjct: 326 LNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDL 385

Query: 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408
           Y+K                                  I+DA  IF  +P K +I+W+ +I
Sbjct: 386 YAK-------------------------------LANIDDALAIFHRLPRKDIIAWSGLI 414

Query: 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468
           +G +Q G    A  +F  M +L   +D F +++++  C+N++SL  G+QV A     G +
Sbjct: 415 MGCAQIGLNWLAFSMFKGMLELVNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYE 474

Query: 469 SDQIISTSLVDFYCKCGFIK 488
            +    TSL+D Y KCG I+
Sbjct: 475 MEGFTITSLLDMYSKCGEIE 494



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/502 (23%), Positives = 192/502 (38%), Gaps = 112/502 (22%)

Query: 36  ILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF 95
           I  +T    N ++  Y + G   +A  LF  MP  N  SWN+MI GF   G  +++L+  
Sbjct: 164 ISRATTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNG-SQRALEFV 222

Query: 96  NVMPQK----NDFSW-----------------------------------NMLISGFAKA 116
           ++M ++    +DF++                                   + LI  ++  
Sbjct: 223 SMMHKRCIKLDDFTFPCALKISALHGLLFIGKQVHSYVTKLGYESSCFTLSALIDMYSNC 282

Query: 117 GELKTARTLFNDMPRRNA------IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC 170
            +L  A  LF+     NA        WNSM+  YV N   + A+ L  E++         
Sbjct: 283 NDLIEAVKLFDQHSSFNASISDNLALWNSMLSGYVINNCDQAALNLLSEIH---CSGALL 339

Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
           D++     +  C +L +   G Q+H  I+  G + D V+GS LV+LY K  +        
Sbjct: 340 DSYTFGGALKVCINLLSRRVGLQLHGLIVTCGYELDYVVGSILVDLYAKLAN-------- 391

Query: 231 NMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290
                                  ++DA  +F R      + W+ +I G      +  A  
Sbjct: 392 -----------------------IDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWLAFS 428

Query: 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350
           +F  M       D   ++++L  CS+L  L  GKQVH    K G   +    ++LLD YS
Sbjct: 429 MFKGMLELVNEIDHFVISTILKVCSNLASLRSGKQVHALCVKSGYEMEGFTITSLLDMYS 488

Query: 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410
           K                               CG IEDA  +F     K ++SW  +IVG
Sbjct: 489 K-------------------------------CGEIEDALTLFCCEQEKDIVSWTGIIVG 517

Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-TIIGLDS 469
             QNG   EA+  F  M +  +  ++ +   V+SAC     +E    +F  + ++ GL+ 
Sbjct: 518 CGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEP 577

Query: 470 DQIISTSLVDFYCKCGFIKMDE 491
                  +VD     G  +  E
Sbjct: 578 HLEHYCCMVDLLASVGLPEEAE 599



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 180/424 (42%), Gaps = 83/424 (19%)

Query: 18  HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC----- 72
           H  + +GKQ+H +  K G  +S   ++  L+ MY  C +  +A+ LFD+    N      
Sbjct: 247 HGLLFIGKQVHSYVTKLGYESSCFTLS-ALIDMYSNCNDLIEAVKLFDQHSSFNASISDN 305

Query: 73  -FSWNAMIEGFMKLGHKEKSLQLF-----------------------NVMPQKNDFSWN- 107
              WN+M+ G++     + +L L                        N++ ++     + 
Sbjct: 306 LALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHG 365

Query: 108 ---------------MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
                          +L+  +AK   +  A  +F+ +PR++ IAW+ +I    + G    
Sbjct: 366 LIVTCGYELDYVVGSILVDLYAKLANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWL 425

Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
           A  +FK +  +LV  +  D F+++T++  C++LA+L  GKQ+H+  + +G          
Sbjct: 426 AFSMFKGM-LELVNEI--DHFVISTILKVCSNLASLRSGKQVHALCVKSGY--------- 473

Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
                                 E + F +++L+  Y+ CG++ DA  +F    +   V W
Sbjct: 474 ----------------------EMEGFTITSLLDMYSKCGEIEDALTLFCCEQEKDIVSW 511

Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
             +I G   N +  EA+  FH+M R+G+  +  T   VLSAC   G +E  + +      
Sbjct: 512 TGIIVGCGQNGKAAEAVRFFHEMIRSGITPNEITFLGVLSACRYAGLVEEARSIFNSMKS 571

Query: 333 V-GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
           V G+   +     ++D  +  G+P +A KL + +         T  T+  +CG   D K 
Sbjct: 572 VYGLEPHLEHYCCMVDLLASVGLPEEAEKLIANMPFEPN--QTTWRTLLGACGTRNDTKL 629

Query: 392 IFRT 395
           I R 
Sbjct: 630 INRV 633


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.324    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,266,020,458
Number of Sequences: 23463169
Number of extensions: 285165127
Number of successful extensions: 1008317
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7460
Number of HSP's successfully gapped in prelim test: 3148
Number of HSP's that attempted gapping in prelim test: 791207
Number of HSP's gapped (non-prelim): 74012
length of query: 496
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 349
effective length of database: 8,910,109,524
effective search space: 3109628223876
effective search space used: 3109628223876
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)