BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010961
(496 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 583 bits (1504), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/482 (58%), Positives = 365/482 (75%), Gaps = 7/482 (1%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
Y RLLQSC++ + + +Q + LKKG L+S + +AN LLQMY R G A LFDE
Sbjct: 28 YYVRLLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDE 87
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
MP RN FSWN MIEG+M G K SL+ F++MP+++ +SWN+++SGFAKAGEL AR LF
Sbjct: 88 MPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLF 147
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
N MP ++ + NS++H Y+ NG+A EA+RLFKELN DA L TV+ ACA+L
Sbjct: 148 NAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELN------FSADAITLTTVLKACAELE 201
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
AL+ GKQIH+ IL+ G++ DS + SSLVN+Y KCGD A+ +L ++EPDD LSALIS
Sbjct: 202 ALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALIS 261
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
GYANCG++N++R +FDR ++ ++WNSMISGYI+NN EAL+LF++MR N ED+ T
Sbjct: 262 GYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRT 320
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
LA+V++AC LGFLE GKQ+H HACK G+IDD++VAS LLD YSK G P +ACKLFSE++
Sbjct: 321 LAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE 380
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
YDTILLN+MI VY SCGRI+DAK +F + NKSLISWNSM G SQNG +E L+ F
Sbjct: 381 SYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQ 440
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M+KLDL D+ SL+SVISACA+ISSLELGEQVFAR TI+GLDSDQ++S+SL+D YCKCGF
Sbjct: 441 MHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGF 500
Query: 487 IK 488
++
Sbjct: 501 VE 502
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 140/482 (29%), Positives = 236/482 (48%), Gaps = 68/482 (14%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L++C ++ GKQ+H L G+ + + + L+ +Y +CG+ A + +++
Sbjct: 190 LTTVLKACAELEALKCGKQIHAQILIGGVECDS-KMNSSLVNVYAKCGDLRMASYMLEQI 248
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
+ +D S + LISG+A G + +R LF+
Sbjct: 249 R-------------------------------EPDDHSLSALISGYANCGRVNESRGLFD 277
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
R I WNSMI Y+ N EA+ LF E+ ++ E D+ LA VI AC L
Sbjct: 278 RKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETRE----DSRTLAAVINACIGLGF 333
Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
LE GKQ+H H GL D V+ S+L+++Y KCG A ++ + ++ D L+++I
Sbjct: 334 LETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKV 393
Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
Y +CG+++DA+RVF+R + S + WNSM +G+ N E L FH+M + + D +L
Sbjct: 394 YFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSL 453
Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
+SV+SAC+S+ LE G+QV A VG+ D +V+S+L+D Y K G ++F +
Sbjct: 454 SSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVK 513
Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
D + N+MI+ Y++ NG EA+DLF M
Sbjct: 514 SDEVPWNSMISGYAT-------------------------------NGQGFEAIDLFKKM 542
Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKCGF 486
+ +R + + V++AC +E G ++F + + G D+ + +VD + G+
Sbjct: 543 SVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGY 602
Query: 487 IK 488
++
Sbjct: 603 VE 604
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 188/410 (45%), Gaps = 78/410 (19%)
Query: 2 DTRID--YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTD 59
+TR D LA ++ +C + GKQ+H H K G+++ + +A+ LL MY +CG+P +
Sbjct: 313 ETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIV-VASTLLDMYSKCGSPME 371
Query: 60 ALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119
A LF E+ + N+MI+ + G +
Sbjct: 372 ACKLFSEVESYDTILLNSMIKVYFS-------------------------------CGRI 400
Query: 120 KTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
A+ +F + ++ I+WNSM + + +NG E + F +++ L D L++VI
Sbjct: 401 DDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHK---LDLPTDEVSLSSVI 457
Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
ACA +++LE G+Q+ + + GLD D V+ SSL++LY K
Sbjct: 458 SACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCK-------------------- 497
Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
CG + RRVFD + V WNSMISGY +N + EA+ LF KM G
Sbjct: 498 -----------CGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAG 546
Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKV--GVIDDVIVASALLDTYSKRGMPSD 357
+ T VL+AC+ G +E G+++ + KV G + D S ++D ++ G +
Sbjct: 547 IRPTQITFMVVLTACNYCGLVEEGRKLF-ESMKVDHGFVPDKEHFSCMVDLLARAGYVEE 605
Query: 358 ACKLFSEL------KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
A L E+ ++ +IL + Y + G+ + A+ I P S+
Sbjct: 606 AINLVEEMPFDVDGSMWSSILRGCVANGYKAMGK-KAAEKIIELEPENSV 654
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 35/219 (15%)
Query: 310 VLSACSSLGFLEHGKQVHGHACKVGVIDD-VIVASALLDTYSKRGMPSDACKLFSELKVY 368
+L +CSS +Q +G K G + VIVA+ LL YS+ G A LF E+
Sbjct: 32 LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91
Query: 369 DTILLNTMITVY-------------------------------SSCGRIEDAKHIFRTMP 397
+ NTMI Y + G + A+ +F MP
Sbjct: 92 NYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP 151
Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQ 457
K +++ NS++ G NG EAL LF +L+ D +L +V+ ACA + +L+ G+Q
Sbjct: 152 EKDVVTLNSLLHGYILNGYAEEALRLF---KELNFSADAITLTTVLKACAELEALKCGKQ 208
Query: 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
+ A++ I G++ D +++SLV+ Y KCG ++M Y L Q
Sbjct: 209 IHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQ 247
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 108/237 (45%), Gaps = 17/237 (7%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L+ ++ +C + S+ +G+Q+ G L+S +++ L+ +Y +CG +FD M
Sbjct: 453 LSSVISACASISSLELGEQVFARATIVG-LDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM 511
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
+ + WN+MI G+ G +++ LF M + ++ ++++ G ++ R
Sbjct: 512 VKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGR 571
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
LF M + ++ M+ R G+ EA+ L +E+ D+ D + +++
Sbjct: 572 KLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDV------DGSMWSSI 625
Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
+ C GK+ I+ + +SV L ++ GD+ S+ V +M+E
Sbjct: 626 LRGCVANGYKAMGKKAAEKIIELEPE-NSVAYVQLSAIFATSGDWESSALVRKLMRE 681
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 232 bits (592), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/430 (31%), Positives = 226/430 (52%), Gaps = 43/430 (10%)
Query: 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR 132
F N +I+ + K G E Q+F+ MPQ+N ++WN +++G K G L A +LF MP R
Sbjct: 56 FIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPER 115
Query: 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
+ WNSM+ + ++ EA+ F ++ E + + A+V+ AC+ L + G
Sbjct: 116 DQCTWNSMVSGFAQHDRCEEALCYFAMMHK---EGFVLNEYSFASVLSACSGLNDMNKGV 172
Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
Q+HS I + D +GS+LV++ Y+ CG
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDM-------------------------------YSKCG 201
Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
+NDA+RVFD D + V WNS+I+ + N EAL +F M + V D TLASV+S
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261
Query: 313 ACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTI 371
AC+SL ++ G++VHG K + +D+I+++A +D Y+K +A +F + + + I
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321
Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431
+MI+ Y+ + A+ +F M ++++SWN++I G +QNG EAL LFC + +
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381
Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGL------DSDQIISTSLVDFYCKCG 485
+ +S A+++ ACA+++ L LG Q V G + D + SL+D Y KCG
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441
Query: 486 FIKMDEYYLM 495
+ +E YL+
Sbjct: 442 CV--EEGYLV 449
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 156/558 (27%), Positives = 259/558 (46%), Gaps = 110/558 (19%)
Query: 8 LARLLQSC--NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
A+LL SC + +I+V + +H +K G N I NRL+ Y +CG+ D +FD
Sbjct: 22 FAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIF-IQNRLIDAYSKCGSLEDGRQVFD 79
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
+MP+RN ++WN+++ G KLG +++ LF MP+++ +WN ++SGFA+ + A
Sbjct: 80 KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCY 139
Query: 126 F-------------------------NDMPR--------------RNAIAWNSMIHCYVR 146
F NDM + + ++++ Y +
Sbjct: 140 FAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSK 199
Query: 147 NGFAREAVRLFKEL-----------------NSDLVE-----------RLQCDAFILATV 178
G +A R+F E+ N VE R++ D LA+V
Sbjct: 200 CGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASV 259
Query: 179 IGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
I ACA L+A++ G+++H ++ N L D +L ++ V++Y KC A + + M +
Sbjct: 260 ISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRN 319
Query: 238 DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297
+++ISGYA AR +F + + + V WN++I+GY N E+ EAL LF ++R
Sbjct: 320 VIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKR 379
Query: 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI------DDVIVASALLDTYSK 351
V + A++L AC+ L L G Q H H K G DD+ V ++L+D Y K
Sbjct: 380 ESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Query: 352 RGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411
CG +E+ +FR M + +SWN+MI+G
Sbjct: 440 -------------------------------CGCVEEGYLVFRKMMERDCVSWNAMIIGF 468
Query: 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSD 470
+QNG EAL+LF M + + D ++ V+SAC + +E G F+ +T G+
Sbjct: 469 AQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPL 528
Query: 471 QIISTSLVDFYCKCGFIK 488
+ T +VD + GF++
Sbjct: 529 RDHYTCMVDLLGRAGFLE 546
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 175/339 (51%), Gaps = 37/339 (10%)
Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGAC--ADLAALEYGKQIHSHILVNGLDFDSVLG 210
A + F +L +DL F A ++ +C + L+A+ Y + +H+ ++ +G + +
Sbjct: 2 ATKSFLKLAADLSSFTDSSPF--AKLLDSCIKSKLSAI-YVRYVHASVIKSGFSNEIFIQ 58
Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
+ L++ Y KCG QV + M + + + +++++G G +++A +F +
Sbjct: 59 NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
WNSM+SG+ ++ EAL F M + G + + + ASVLSACS L + G QVH
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178
Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
K + DV + SAL+D YSK G +DA ++F E+ + + N++IT +
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCF---------- 228
Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
QNG +EALD+F M + + D+ +LASVISACA++S
Sbjct: 229 ---------------------EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLS 267
Query: 451 SLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
++++G++V RV L +D I+S + VD Y KC IK
Sbjct: 268 AIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 183/451 (40%), Gaps = 116/451 (25%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A +L +C+ + ++ G Q+H K L S + I + L+ MY +CGN DA +FDEM
Sbjct: 155 FASVLSACSGLNDMNKGVQVHSLIAKSPFL-SDVYIGSALVDMYSKCGNVNDAQRVFDEM 213
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
RN SWN++I F + G ++L +F +M +
Sbjct: 214 GDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQ 273
Query: 101 -------KND------FSWNMLISGFAKAGELKTARTLFNDMPRRNAIA----------- 136
KND N + +AK +K AR +F+ MP RN IA
Sbjct: 274 EVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMA 333
Query: 137 --------------------WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-FIL 175
WN++I Y +NG EA+ LF L + V C +
Sbjct: 334 ASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV----CPTHYSF 389
Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQV 229
A ++ ACADLA L G Q H H+L +G F S +G+SL+++Y KCG V
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLV 449
Query: 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
M E D +A+I G+A G N EAL
Sbjct: 450 FRKMMERDCVSWNAMIIGFAQNGYGN-------------------------------EAL 478
Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDT 348
LF +M +G D T+ VLSAC GF+E G+ + GV + ++D
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538
Query: 349 YSKRGMPSDACKLFSELKVY-DTILLNTMIT 378
+ G +A + E+ + D+++ +++
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLA 569
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 231 bits (590), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 232/484 (47%), Gaps = 65/484 (13%)
Query: 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFD 65
D LA LLQ C S+ GK +H H G ++N L+ MYM+CG P DA
Sbjct: 47 DLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDAC---- 102
Query: 66 EMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTL 125
++F+ M +N +SWN ++SG+ K+G L AR +
Sbjct: 103 ---------------------------KVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVV 135
Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
F+ MP R+ ++WN+M+ Y ++G EA+ +KE + + + F A ++ AC
Sbjct: 136 FDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGI---KFNEFSFAGLLTACVKS 192
Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
L+ +Q H +LV G + VL S+++ Y KCG SA + + M D + LI
Sbjct: 193 RQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLI 252
Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
SGYA G M A ++F + + V W ++I+GY+ AL LF KM GV +
Sbjct: 253 SGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQF 312
Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
T +S L A +S+ L HGK++HG+ + V + IV S+L+D YSK G + ++F
Sbjct: 313 TFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF--- 369
Query: 366 KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425
RI D KH + WN+MI L+Q+G +AL +
Sbjct: 370 -------------------RICDDKH--------DCVFWNTMISALAQHGLGHKALRMLD 402
Query: 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIISTSLVDFYCKC 484
+M K ++ ++ +L +++AC++ +E G + F +T+ G+ DQ L+D +
Sbjct: 403 DMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRA 462
Query: 485 GFIK 488
G K
Sbjct: 463 GCFK 466
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 194/364 (53%), Gaps = 5/364 (1%)
Query: 130 PRRNAI-AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188
PR+ I S + + +AV + L + RL D +LA+++ C D +L
Sbjct: 6 PRKRPICVAQSFLSKHATKAELSQAVSRLESLTQQGI-RLPFD--LLASLLQQCGDTKSL 62
Query: 189 EYGKQIHSHILVNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
+ GK IH H+ + G +++L + L+ +Y KCG A +V + M + + + ++SG
Sbjct: 63 KQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSG 122
Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
Y G + AR VFD + V WN+M+ GY + EAL + + RR+G+ + +
Sbjct: 123 YVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSF 182
Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
A +L+AC L+ +Q HG G + +V+++ +++D Y+K G A + F E+ V
Sbjct: 183 AGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTV 242
Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
D + T+I+ Y+ G +E A+ +F MP K+ +SW ++I G + GS ALDLF M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302
Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
L ++ ++F+ +S + A A+I+SL G+++ + + + I+ +SL+D Y K G +
Sbjct: 303 IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSL 362
Query: 488 KMDE 491
+ E
Sbjct: 363 EASE 366
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/523 (29%), Positives = 244/523 (46%), Gaps = 108/523 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA + ++ ++ S VG+Q H +K + + L+ MY + G D L +F M
Sbjct: 121 LAGIFKAESSLQSSTVGRQAHALVVKMSSFGD-IYVDTSLVGMYCKAGLVEDGLKVFAYM 179
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK------NDFSW--------------- 106
P RN ++W+ M+ G+ G E+++++FN+ ++ +D+ +
Sbjct: 180 PERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGL 239
Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
N L++ ++K L A +F+ RN+I W++M+ Y +
Sbjct: 240 GRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 299
Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
NG + EAV+LF + S ++ + + V+ AC+D+ LE GKQ+HS +L G
Sbjct: 300 NGESLEAVKLFSRMFS---AGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF--- 353
Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
E F +AL+ YA G + DAR+ FD +
Sbjct: 354 ----------------------------ERHLFATTALVDMYAKAGCLADARKGFDCLQE 385
Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
+W S+ISGY+ N+++ EAL+L+ +M+ G++ + T+ASVL ACSSL LE GKQV
Sbjct: 386 RDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQV 445
Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
HGH K G +V + SAL YSK CG +
Sbjct: 446 HGHTIKHGFGLEVPIGSALSTMYSK-------------------------------CGSL 474
Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
ED +FR PNK ++SWN+MI GLS NG EAL+LF M + D + ++ISAC
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISAC 534
Query: 447 ANISSLELGEQVFARVT-IIGLDSDQIISTSLVDFYCKCGFIK 488
++ +E G F ++ IGLD +VD + G +K
Sbjct: 535 SHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLK 577
Score = 172 bits (435), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 133/518 (25%), Positives = 221/518 (42%), Gaps = 110/518 (21%)
Query: 17 THHS----IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
THHS + G+ +H ++ G ++ + AN L+ Y +CG A +F+ + ++
Sbjct: 22 THHSQQRNLVAGRAVHGQIIRTGA-STCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDV 80
Query: 73 FSWNAMIEGFMKLG-------------------------------HKEKSLQLFNVMPQK 101
SWN++I G+ + G E SLQ V Q
Sbjct: 81 VSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQA 140
Query: 102 NDFSWNM-----------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
+ M L+ + KAG ++ +F MP RN W++M+ Y G
Sbjct: 141 HALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRV 200
Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
EA+++F + E D ++ V+ + A + G+QIH + NGL L
Sbjct: 201 EEAIKVFNLFLREKEEGSDSD-YVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALS 259
Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
++LV +Y K C +N+A ++FD + D +S+
Sbjct: 260 NALVTMYSK-------------------------------CESLNEACKMFDSSGDRNSI 288
Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
W++M++GY N E EA+ LF +M G+ T+ VL+ACS + +LE GKQ+H
Sbjct: 289 TWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFL 348
Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
K+G + +AL+D Y+K G +DA K F L+ D L ++I+
Sbjct: 349 LKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLIS------------ 396
Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
G QN EAL L+ M + + ++ASV+ AC++++
Sbjct: 397 -------------------GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLA 437
Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
+LELG+QV G + I ++L Y KCG ++
Sbjct: 438 TLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLE 475
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+A +L++C++ ++ +GKQ+H H +K G +PI + L MY +CG+ D L+F
Sbjct: 426 MASVLKACSSLATLELGKQVHGHTIKHG-FGLEVPIGSALSTMYSKCGSLEDGNLVFRRT 484
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
P ++ SWNAMI G G +++L+LF M + +D ++ +IS + G ++
Sbjct: 485 PNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGW 544
Query: 124 TLFNDMPRRNAI-----AWNSMIHCYVRNGFAREAVRLFKELNSD 163
FN M + + + M+ R G +EA + N D
Sbjct: 545 FYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANID 589
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 54/340 (15%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L +C+ + GKQLH LK G L L+ MY + G DA FD + R
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLG-FERHLFATTALVDMYAKAGCLADARKGFDCLQER 386
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQ------------------------ 100
+ W ++I G+++ E++L L+ ++P
Sbjct: 387 DVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 446
Query: 101 ----KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
K+ F + I ++K G L+ +F P ++ ++WN+MI NG
Sbjct: 447 GHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGD 506
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG- 210
EA+ LF+E+ L E ++ D +I AC+ +E G + +++ + + D +
Sbjct: 507 EALELFEEM---LAEGMEPDDVTFVNIISACSHKGFVERG-WFYFNMMSDQIGLDPKVDH 562
Query: 211 -SSLVNLYGKCGDFNSANQVLNMMKEPDDFCL-SALISGYANCGKMNDARRVFDR----- 263
+ +V+L + G A + + CL L+S N GK ++
Sbjct: 563 YACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALG 622
Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
+ ++S+ + S I + D E ++ MR NGV ++
Sbjct: 623 SRESSTYVQLSGIYTALGRMRDVER--VWKHMRANGVSKE 660
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
STL L+ S L G+ VHG + G + A+ L++ Y+K G + A +F+
Sbjct: 15 STLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNA 74
Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
+ D + N++IT YS G I S + LF
Sbjct: 75 IICKDVVSWNSLITGYSQNGGIS----------------------------SSYTVMQLF 106
Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
M D+ + ++LA + A +++ S +G Q A V + D + TSLV YCK
Sbjct: 107 REMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKA 166
Query: 485 GFIK 488
G ++
Sbjct: 167 GLVE 170
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 234/481 (48%), Gaps = 92/481 (19%)
Query: 41 LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ 100
+ + +++ Y R DAL LFDEMP R+ SWN+MI G ++ G +++LF+ MP+
Sbjct: 66 VSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPE 125
Query: 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL 160
++ SW +++G ++G++ A LF MP ++ AWNSM+H Y++ G +A++LFK++
Sbjct: 126 RSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQM 185
Query: 161 NS-------------DLVER-----------LQC----DAFILATVIGACADLAALEYGK 192
D ER L+C + VI ACA+ A G
Sbjct: 186 PGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGI 245
Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
Q+H I+ G ++ + +SL+ Y C
Sbjct: 246 QVHGLIIKLGFLYEEYVSASLITFYANC-------------------------------K 274
Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
++ D+R+VFD +W +++SGY N + +AL +F M RN +L + ST AS L+
Sbjct: 275 RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLN 334
Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
+CS+LG L+ GK++HG A K+G+ D V ++L+ YS G +DA +F +K++
Sbjct: 335 SCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVF--IKIF---- 388
Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
KS++SWNS+IVG +Q+G A +F M +L+
Sbjct: 389 -------------------------KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNK 423
Query: 433 RMDKFSLASVISACANISSLELGEQVFARVT--IIGLDSDQIISTSLVDFYCKCGFIKMD 490
D+ + ++SAC++ LE G ++F ++ I +D T +VD +CG +K
Sbjct: 424 EPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEA 483
Query: 491 E 491
E
Sbjct: 484 E 484
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%)
Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
++++AR VF++ ++ MI+GY +N +AL LF +M + D + S++S
Sbjct: 50 RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMP----VRDVVSWNSMIS 105
Query: 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL 372
C G + ++ + V+ +A+++ + G A +LF ++ V DT
Sbjct: 106 GCVECGDMNTAVKLFDEMPERSVVS----WTAMVNGCFRSGKVDQAERLFYQMPVKDTAA 161
Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
N+M+ Y G+++DA +F+ MP K++ISW +MI GL QN EALDLF NM + +
Sbjct: 162 WNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCI 221
Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
+ VI+ACAN + +G QV + +G ++ +S SL+ FY C I
Sbjct: 222 KSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRI 276
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/341 (18%), Positives = 146/341 (42%), Gaps = 49/341 (14%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
++ +C + H+G Q+H +K G L ++ L+ Y C D+ +FDE
Sbjct: 231 VITACANAPAFHMGIQVHGLIIKLGFLYEEY-VSASLITFYANCKRIGDSRKVFDEKVHE 289
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFS-------------W----- 106
W A++ G+ E +L +F +++P ++ F+ W
Sbjct: 290 QVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMH 349
Query: 107 ---------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
N L+ ++ +G + A ++F + +++ ++WNS+I ++G +
Sbjct: 350 GVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGK 409
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL--VNGLDFDSVL 209
A +F ++ + + D ++ AC+ LE G+++ ++ +N +D
Sbjct: 410 WAFVIFGQM---IRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQH 466
Query: 210 GSSLVNLYGKCGDFNSANQVLN-MMKEPDDFCLSALISG---YANCGKMNDARRVFDRTT 265
+ +V++ G+CG A +++ M+ +P++ AL+S +++ + A
Sbjct: 467 YTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLD 526
Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
SS + + + Y S + L KM++NG+++ +
Sbjct: 527 SKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGS 567
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 224/452 (49%), Gaps = 52/452 (11%)
Query: 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNV 97
+S + N + YMR G +AL +F MPR + S+N MI G+++ G E + +LF+
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 98 MPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF 157
MP+++ SWN++I G+ + L AR LF MP R+ +WN+M+ Y +NG +A +F
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180
Query: 158 KELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217
+ + +A + A V + + A + + K + LV+ ++ +LG +
Sbjct: 181 DRMPEK--NDVSWNALLSAYVQNSKMEEACMLF-KSRENWALVS---WNCLLGG-----F 229
Query: 218 GKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277
K A Q + M D + +I+GYA GK+++AR++FD + W +M+S
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289
Query: 278 GYISNNEDTEALLLFHKM-RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336
GYI N EA LF KM RN V
Sbjct: 290 GYIQNRMVEEARELFDKMPERNEV------------------------------------ 313
Query: 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM 396
+A+L Y + A +LF + + NTMIT Y+ CG+I +AK++F M
Sbjct: 314 ----SWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKM 369
Query: 397 PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456
P + +SW +MI G SQ+G EAL LF M + R+++ S +S +S CA++ +LELG+
Sbjct: 370 PKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGK 429
Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
Q+ R+ G ++ + +L+ YCKCG I+
Sbjct: 430 QLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 141/508 (27%), Positives = 233/508 (45%), Gaps = 92/508 (18%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N ++ Y+R G A LFDEMP R+ SWN MI+G+++ + K+ +LF +MP+++
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS-- 162
SWN ++SG+A+ G + AR++F+ MP +N ++WN+++ YV+N EA LFK +
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218
Query: 163 ---------------DLVERLQC-------DAFILATVIGACADLAALEYGKQIHSHILV 200
+VE Q D T+I A ++ +Q+ V
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPV 278
Query: 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---------------- 244
D +++V+ Y + A ++ + M E ++ +A+
Sbjct: 279 Q----DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKEL 334
Query: 245 ---------------ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL 289
I+GYA CGK+++A+ +FD+ V W +MI+GY + EAL
Sbjct: 335 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEAL 394
Query: 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349
LF +M R G + S+ +S LS C+ + LE GKQ+HG K G V +ALL Y
Sbjct: 395 RLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 454
Query: 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409
K G +A LF E+ D + NTMI YS +H F +
Sbjct: 455 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS--------RHGFGEV------------- 493
Query: 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLD 468
AL F +M + L+ D ++ +V+SAC++ ++ G Q F +T G+
Sbjct: 494 ----------ALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVM 543
Query: 469 SDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
+ +VD + G ++ D + LM+
Sbjct: 544 PNSQHYACMVDLLGRAGLLE-DAHNLMK 570
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 208/448 (46%), Gaps = 90/448 (20%)
Query: 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
I NR+++ +A LFD+MP RN SWNAM+ G+++ E + +LF+VMP +N
Sbjct: 292 IQNRMVE---------EARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN 342
Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
+WN +I+G+A+ G++ A+ LF+ MP+R+ ++W +MI Y ++G + EA+RLF ++
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402
Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
+ RL +F ++ + CAD+ ALE GKQ+H ++ G + +G++L+ +Y KC
Sbjct: 403 E-GGRLNRSSF--SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-- 457
Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
G + +A +F V WN+MI+GY +
Sbjct: 458 -----------------------------GSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 283 NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIV 341
AL F M+R G+ D +T+ +VLSACS G ++ G+Q + GV+ +
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548
Query: 342 ASALLDTYSKRGMPSDACKLFSELK------VYDTILLNTMI------------------ 377
+ ++D + G+ DA L + ++ T+L + +
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608
Query: 378 -----------TVYSSCGRIEDAKHIFRTMPNKSL-----ISW-----NSMIVGLSQNGS 416
+Y+S GR D + M +K + SW + +
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 668
Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVIS 444
P E ++F + +LDLRM K S S
Sbjct: 669 P-EKDEIFAFLEELDLRMKKAGYVSKTS 695
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 17/233 (7%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C ++ +GKQLH +K G + N LL MY +CG+ +A LF EM ++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCF-VGNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
SWN MI G+ + G E +L+ F M ++ +D + ++S + G + R F
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534
Query: 128 DMPRRNAIAWNS-----MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
M + + NS M+ R G +A L K + + DA I T++GA
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP------FEPDAAIWGTLLGAS 588
Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
E + I + +S + L NLY G + ++ M++
Sbjct: 589 RVHGNTELAETAADKIFAMEPE-NSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 153/516 (29%), Positives = 237/516 (45%), Gaps = 112/516 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL C S+ +Q H G++ + IA +L+ +Y G DA L+FD++P
Sbjct: 50 LLSKCTNIDSL---RQSHGVLTGNGLMGD-ISIATKLVSLYGFFGYTKDARLVFDQIPEP 105
Query: 71 NCFSWNAMIEGF----------------MKLGHK------EKSL---------------- 92
+ + W M+ + MK G + K+L
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165
Query: 93 -QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
QL V P ++ L+ +AK GE+K+A +FND+ RN + W SMI YV+N
Sbjct: 166 CQLVKV-PSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCE 224
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
E + LF + + + + + T+I AC L+AL GK H ++ +G++ S L +
Sbjct: 225 EGLVLFNRMREN---NVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVT 281
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
SL+++Y KC G +++ARRVF+ + VM
Sbjct: 282 SLLDMYVKC-------------------------------GDISNARRVFNEHSHVDLVM 310
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
W +MI GY N EAL LF KM+ + + T+ASVLS C + LE G+ VHG +
Sbjct: 311 WTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSI 370
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
KVG+ +DT + N ++ +Y+ C + DAK+
Sbjct: 371 KVGI--------------------------------WDTNVANALVHMYAKCYQNRDAKY 398
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
+F K +++WNS+I G SQNGS EAL LF MN + + ++AS+ SACA++ S
Sbjct: 399 VFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGS 458
Query: 452 LELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCG 485
L +G + A +G S + T+L+DFY KCG
Sbjct: 459 LAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 71/353 (20%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L+ +C ++H GK H +K GI S+ + LL MY++CG+ ++A +F+E
Sbjct: 248 LIMACTKLSALHQGKWFHGCLVKSGIELSSC-LVTSLLDMYVKCGDISNARRVFNEHSHV 306
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFS--------------------- 105
+ W AMI G+ G ++L LF M + N +
Sbjct: 307 DLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVH 366
Query: 106 --------W-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
W N L+ +AK + + A+ +F ++ +AWNS+I + +NG E
Sbjct: 367 GLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHE 426
Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
A+ LF +NS E + + +A++ ACA L +L G +H++ + G L SS
Sbjct: 427 ALFLFHRMNS---ESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGF-----LASS 478
Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
V++ +AL+ YA CG AR +FD + +++ W
Sbjct: 479 SVHVG------------------------TALLDFYAKCGDPQSARLIFDTIEEKNTITW 514
Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
++MI GY + +L LF +M + + ST S+LSAC G + GK+
Sbjct: 515 SAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKK 567
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 32/246 (13%)
Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
+ L+S Y G DAR VFD+ + +W M+ Y N E E + L+ + ++G
Sbjct: 80 TKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFR 139
Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
D + L AC+ L L++GK++H KV PS
Sbjct: 140 YDDIVFSKALKACTELQDLDNGKKIHCQLVKV---------------------PS----- 173
Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
+D ++L ++ +Y+ CG I+ A +F + ++++ W SMI G +N E L
Sbjct: 174 ------FDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGL 227
Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481
LF M + ++ ++++ ++I AC +S+L G+ + G++ + TSL+D Y
Sbjct: 228 VLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMY 287
Query: 482 CKCGFI 487
KCG I
Sbjct: 288 VKCGDI 293
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 21/240 (8%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGIL-NSTLPIANRLLQMYMRCGNPTDALLLFDE 66
+A L +C + S+ VG LH + +K G L +S++ + LL Y +CG+P A L+FD
Sbjct: 446 VASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDT 505
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTA 122
+ +N +W+AMI G+ K G SL+LF M +K N+ ++ ++S G +
Sbjct: 506 IEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEG 565
Query: 123 RTLFNDMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL--QCDAFIL 175
+ F+ M + + + M+ R G +A+ D++E++ Q D
Sbjct: 566 KKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQAL--------DIIEKMPIQPDVRCF 617
Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
+ C + + G+ + +L D D+ + NLY G +N A +V N+MK+
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPD-DASYYVLVSNLYASDGRWNQAKEVRNLMKQ 676
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
D + ++++Y G +DA+ +F +P W M+ N +E + L+ +
Sbjct: 75 DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLM 134
Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
K R D + + AC + L+ G+++ ++ + D ++ T L+D Y KCG IK
Sbjct: 135 KHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIK 193
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 162/566 (28%), Positives = 253/566 (44%), Gaps = 120/566 (21%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+LQ C + GKQ+H LK G I +L+ Y +C A +LF ++
Sbjct: 74 GEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKL 133
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI----------------- 110
RN FSW A+I ++G E +L F M + F N ++
Sbjct: 134 RVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGR 193
Query: 111 --------SG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
SG + K G L A +F+++P RNA+AWN+++ YV+NG
Sbjct: 194 GVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNG 253
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
EA+RLF ++ VE + ++T + A A++ +E GKQ H+ +VNG++ D++
Sbjct: 254 KNEEAIRLFSDMRKQGVEPTR---VTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNI 310
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
LG+SL+N Y K G + A VFDR +
Sbjct: 311 LGTSLLNFYCKVG-------------------------------LIEYAEMVFDRMFEKD 339
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
V WN +ISGY+ +A+ + MR + D TLA+++SA + L+ GK+V
Sbjct: 340 VVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQC 399
Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG---- 384
+ + D+++AS ++D Y+K G DA K+F D IL NT++ Y+ G
Sbjct: 400 YCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGE 459
Query: 385 -------------------------------RIEDAKHIFRTM------PNKSLISWNSM 407
++++AK +F M PN LISW +M
Sbjct: 460 ALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPN--LISWTTM 517
Query: 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL 467
+ G+ QNG EA+ M + LR + FS+ +SACA+++SL +G + + I L
Sbjct: 518 MNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYI-IRNL 576
Query: 468 DSDQIIS--TSLVDFYCKCGFIKMDE 491
++S TSLVD Y KCG I E
Sbjct: 577 QHSSLVSIETSLVDMYAKCGDINKAE 602
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 124/529 (23%), Positives = 235/529 (44%), Gaps = 112/529 (21%)
Query: 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
++C G+ +H + +K G L + +A+ L MY +CG DA +FDE+P RN
Sbjct: 181 KACGALKWSRFGRGVHGYVVKSG-LEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNA 239
Query: 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------DFSWNM------------ 108
+WNA++ G+++ G E++++LF+ M ++ S NM
Sbjct: 240 VAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAI 299
Query: 109 ---------------LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
L++ + K G ++ A +F+ M ++ + WN +I YV+ G +A
Sbjct: 300 AIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDA 359
Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
+ + + + +E+L+ D LAT++ A A L+ GK++ + + + + D VL S++
Sbjct: 360 IYMCQLMR---LEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTV 416
Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF------------ 261
+++Y KCG A +V + E D + L++ YA G +A R+F
Sbjct: 417 MDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNV 476
Query: 262 ----------------DRTTD------TSSVM-----WNSMISGYISNNEDTEALLLFHK 294
D D +S ++ W +M++G + N EA+L K
Sbjct: 477 ITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRK 536
Query: 295 MRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354
M+ +G+ +A ++ LSAC+ L L G+ +HG Y R +
Sbjct: 537 MQESGLRPNAFSITVALSACAHLASLHIGRTIHG--------------------YIIRNL 576
Query: 355 PSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414
S L +T +++ +Y+ CG I A+ +F + L N+MI +
Sbjct: 577 Q------HSSLVSIET----SLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALY 626
Query: 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
G+ EA+ L+ ++ + L+ D ++ +V+SAC + + ++F +
Sbjct: 627 GNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIV 675
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 63/346 (18%)
Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
+NG +EA+ L E++ L+ I ++ C L GKQIH+ IL NG
Sbjct: 47 KNGEIKEALSLVTEMD---FRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNG--- 100
Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
DF + N+ + + L+ YA C + A +F +
Sbjct: 101 ----------------DFYARNEYIE----------TKLVIFYAKCDALEIAEVLFSKLR 134
Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
+ W ++I AL+ F +M N + D + +V AC +L + G+
Sbjct: 135 VRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRG 194
Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
VHG+ K G+ D V VAS+L D Y K CG
Sbjct: 195 VHGYVVKSGLEDCVFVASSLADMYGK-------------------------------CGV 223
Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
++DA +F +P+++ ++WN+++VG QNG EA+ LF +M K + + ++++ +SA
Sbjct: 224 LDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSA 283
Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
AN+ +E G+Q A + G++ D I+ TSL++FYCK G I+ E
Sbjct: 284 SANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAE 329
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 178/400 (44%), Gaps = 72/400 (18%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA L+ + ++ +GK++ + ++ S + +A+ ++ MY +CG+ DA +FD
Sbjct: 378 LATLMSAAARTENLKLGKEVQCYCIRHS-FESDIVLASTVMDMYAKCGSIVDAKKVFDST 436
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTAR 123
++ WN ++ + + G ++L+LF M N +WN++I + G++ A+
Sbjct: 437 VEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAK 496
Query: 124 TLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179
+F M N I+W +M++ V+NG + EA+ +++ L+ +AF + +
Sbjct: 497 DMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQES---GLRPNAFSITVAL 553
Query: 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
ACA LA+L G+ IH +I+ N + SSLV++
Sbjct: 554 SACAHLASLHIGRTIHGYIIRN------LQHSSLVSIE---------------------- 585
Query: 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
++L+ YA CG +N A +VF + + N+MIS Y EA+ L+ + G
Sbjct: 586 --TSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVG 643
Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
+ D T+ +VLSAC+ G + ++ D SKR M C
Sbjct: 644 LKPDNITITNVLSACNHAGDINQAIEI------------------FTDIVSKRSM--KPC 683
Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
L+ Y M+ + +S G E A + MP K
Sbjct: 684 -----LEHY-----GLMVDLLASAGETEKALRLIEEMPFK 713
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 87/226 (38%), Gaps = 29/226 (12%)
Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
++ SS + +S N E EAL L +M + +L C L
Sbjct: 28 EQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLS 87
Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381
GKQ+H K G D Y++ + + ++ Y+
Sbjct: 88 TGKQIHARILKNG------------DFYAR-----------------NEYIETKLVIFYA 118
Query: 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
C +E A+ +F + +++ SW ++I + G AL F M + ++ D F + +
Sbjct: 119 KCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPN 178
Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
V AC + G V V GL+ +++SL D Y KCG +
Sbjct: 179 VCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVL 224
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
+KH + S S+ + L +NG EAL L M+ +LR+ ++ C
Sbjct: 23 SKHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVY 82
Query: 449 ISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMDE 491
L G+Q+ AR+ G ++ I T LV FY KC +++ E
Sbjct: 83 ERDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAE 127
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 229/415 (55%), Gaps = 6/415 (1%)
Query: 76 NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
N ++ + K G+ + +LF+ MP + FSWN ++S ++K G++ + F+ +P+R+++
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
+W +MI Y G +A+R+ ++ + +E Q F L V+ + A +E GK++H
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ---FTLTNVLASVAATRCMETGKKVH 169
Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
S I+ GL + + +SL+N+Y KCGD A V + M D +A+I+ + G+M+
Sbjct: 170 SFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMD 229
Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSAC 314
A F++ + V WNSMISG+ D AL +F KM R+ +L D TLASVLSAC
Sbjct: 230 LAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSAC 289
Query: 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTIL-- 372
++L L GKQ+H H G IV +AL+ YS+ G A +L + D +
Sbjct: 290 ANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEG 349
Query: 373 LNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
++ Y G + AK+IF ++ ++ +++W +MIVG Q+GS EA++LF +M
Sbjct: 350 FTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ 409
Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
R + ++LA+++S ++++SL G+Q+ G +S +L+ Y K G I
Sbjct: 410 RPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNI 464
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 147/495 (29%), Positives = 227/495 (45%), Gaps = 77/495 (15%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L S + GK++H +K G L + ++N LL MY +CG+P A +FD M
Sbjct: 149 LTNVLASVAATRCMETGKKVHSFIVKLG-LRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM 207
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
R+ SW N +I+ + G++ A F
Sbjct: 208 VVRDISSW-------------------------------NAMIALHMQVGQMDLAMAQFE 236
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
M R+ + WNSMI + + G+ A+ +F ++ D + L D F LA+V+ ACA+L
Sbjct: 237 QMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL--LSPDRFTLASVLSACANLEK 294
Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC--LSALI 245
L GKQIHSHI+ G D ++ ++L+++Y +CG +A +++ D +AL+
Sbjct: 295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354
Query: 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305
GY G MN A+ +F D V W +MI GY + EA+ LF M G ++
Sbjct: 355 DGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414
Query: 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
TLA++LS SSL L HGKQ+HG A K G I V V++AL+ Y+K G + A + F +
Sbjct: 415 TLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLI 474
Query: 366 KV-YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
+ DT+ +MI + G E EAL+LF
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAE-------------------------------EALELF 503
Query: 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST-----SLVD 479
M LR D + V SAC + + G Q F + D D+II T +VD
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK----DVDKIIPTLSHYACMVD 559
Query: 480 FYCKCGFIKMDEYYL 494
+ + G ++ + ++
Sbjct: 560 LFGRAGLLQEAQEFI 574
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 164/296 (55%), Gaps = 1/296 (0%)
Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
+H ++ +GL F L ++L+N+Y K G A ++ + M F + ++S Y+ G
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95
Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
M+ FD+ SV W +MI GY + + +A+ + M + G+ TL +VL++
Sbjct: 96 MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155
Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
++ +E GK+VH K+G+ +V V+++LL+ Y+K G P A +F + V D
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215
Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-L 432
N MI ++ G+++ A F M + +++WNSMI G +Q G + ALD+F M + L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275
Query: 433 RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
D+F+LASV+SACAN+ L +G+Q+ + + G D I+ +L+ Y +CG ++
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVE 331
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 18/222 (8%)
Query: 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
GKQ+H +K G + S + ++N L+ MY + GN T A FD + R+ SW +MI
Sbjct: 432 GKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIAL 490
Query: 83 MKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-- 136
+ GH E++L+LF M + + ++ + S AG + R F+ M + I
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPT 550
Query: 137 ---WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
+ M+ + R G +EA +++ ++ D +++ AC ++ GK
Sbjct: 551 LSHYACMVDLFGRAGLLQEAQEFIEKMP------IEPDVVTWGSLLSACRVHKNIDLGKV 604
Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
+L+ + +S S+L NLY CG + A ++ MK+
Sbjct: 605 AAERLLLLEPE-NSGAYSALANLYSACGKWEEAAKIRKSMKD 645
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 198/421 (47%), Gaps = 34/421 (8%)
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
+P F +N ++ + + + ++F+ +PQ N FSWN L+ ++KAG + + F
Sbjct: 36 LPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTF 95
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
+P R+ + WN +I Y +G AV+ + + D L L T++ +
Sbjct: 96 EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLT--RVTLMTMLKLSSSNG 153
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALIS 246
+ GKQIH ++ G + ++GS L+ +Y G + A +V + + + ++L+
Sbjct: 154 HVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMG 213
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
G CG + DA ++F R + SV W +MI G N EA+ F +M+ G+ D
Sbjct: 214 GLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYP 272
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
SVL AC LG + GKQ+H + D + V SAL+D Y K
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK--------------- 317
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
C + AK +F M K+++SW +M+VG Q G EA+ +F +
Sbjct: 318 ----------------CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLD 361
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486
M + + D ++L ISACAN+SSLE G Q + GL +S SLV Y KCG
Sbjct: 362 MQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGD 421
Query: 487 I 487
I
Sbjct: 422 I 422
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/462 (27%), Positives = 206/462 (44%), Gaps = 101/462 (21%)
Query: 3 TRIDYLARL-LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
TR+ + L L S N H + +GKQ+H +K G S L + + LL MY G +DA
Sbjct: 138 TRVTLMTMLKLSSSNGH--VSLGKQIHGQVIKLG-FESYLLVGSPLLYMYANVGCISDAK 194
Query: 62 LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKT 121
+F + RN +N+++ G + G E +LQLF M +K+ SW +I G A+
Sbjct: 195 KVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQ------ 247
Query: 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
NG A+EA+ F+E+ V+ L+ D + +V+ A
Sbjct: 248 -------------------------NGLAKEAIECFREMK---VQGLKMDQYPFGSVLPA 279
Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
C L A+ GKQIH+ I+ +GS+L+++Y KC + A V + MK+ +
Sbjct: 280 CGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSW 339
Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
+A++ GY G+ EA+ +F M+R+G+
Sbjct: 340 TAMVVGYGQTGRAE-------------------------------EAVKIFLDMQRSGID 368
Query: 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
D TL +SAC+++ LE G Q HG A G+I V V+++L+ Y K G D+ +L
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428
Query: 362 FSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421
F+E+ V D + M++ Y+ GR +E +
Sbjct: 429 FNEMNVRDAVSWTAMVSAYAQFGR-------------------------------AVETI 457
Query: 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
LF M + L+ D +L VISAC+ +E G++ F +T
Sbjct: 458 QLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMT 499
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 129/289 (44%), Gaps = 47/289 (16%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+L +C +I+ GKQ+H ++ + + + L+ MY +C A +FD M
Sbjct: 273 FGSVLPACGGLGAINEGKQIHACIIRTN-FQDHIYVGSALIDMYCKCKCLHYAKTVFDRM 331
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------------NV--MPQKN 102
++N SW AM+ G+ + G E+++++F NV + + +
Sbjct: 332 KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391
Query: 103 DFSWNMLISG--------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
F + SG + K G++ + LFN+M R+A++W +M+ Y + G
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
A E ++LF ++ + L+ D L VI AC+ +E G Q + ++ +
Sbjct: 452 RAVETIQLFDKM---VQHGLKPDGVTLTGVISACSRAGLVEKG-QRYFKLMTSEYGIVPS 507
Query: 209 LG--SSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKM 254
+G S +++L+ + G A + +N M PD + L+S N G +
Sbjct: 508 IGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNL 556
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L + + +C S+ G Q H + G+++ + ++N L+ +Y +CG+ D+ LF+EM
Sbjct: 374 LGQAISACANVSSLEEGSQFHGKAITSGLIH-YVTVSNSLVTLYGKCGDIDDSTRLFNEM 432
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
R+ SW AM+ + + G +++QLF+ M Q + + +IS ++AG ++ +
Sbjct: 433 NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ 492
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
F M I ++ MI + R+G EA+R + DA T+
Sbjct: 493 RYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP------FPPDAIGWTTL 546
Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV-NLYGKCGDFNSANQVLNMMKEPD 237
+ AC + LE GK ++ LD G +L+ ++Y G ++S Q+ M+E +
Sbjct: 547 LSACRNKGNLEIGKWAAESLIE--LDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKN 604
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 78/165 (47%), Gaps = 1/165 (0%)
Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
K +HG+ + + + + ++ Y+ + A ++F + + N ++ YS
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLASV 442
G I + + F +P++ ++WN +I G S +G A+ + M + + + +L ++
Sbjct: 86 GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145
Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
+ ++ + LG+Q+ +V +G +S ++ + L+ Y G I
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCI 190
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/516 (27%), Positives = 240/516 (46%), Gaps = 109/516 (21%)
Query: 11 LLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
+L++C + + VG ++H +K G+ + + I LL MY + GN +DA +FD MP
Sbjct: 106 VLRACAGSREHLSVGGKVHGRIIKGGVDDDAV-IETSLLCMYGQTGNLSDAEKVFDGMPV 164
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQK---------------------- 101
R+ +W+ ++ ++ G K+L++F M P
Sbjct: 165 RDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSV 224
Query: 102 -----------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
++ N L++ ++K G+L ++ +F + ++NA++W +MI Y R F+
Sbjct: 225 HGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFS 284
Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
+A+R F E+ +E + L +V+ +C + + GK +H + LD
Sbjct: 285 EKALRSFSEMIKSGIEP---NLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELD------ 335
Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-ALISGYANCGKMNDARRVFDRTTDTSS 269
P+ LS AL+ YA CGK++D V +D +
Sbjct: 336 -------------------------PNYESLSLALVELYAECGKLSDCETVLRVVSDRNI 370
Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
V WNS+IS Y +AL LF +M + DA TLAS +SAC + G + GKQ+HGH
Sbjct: 371 VAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGH 430
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
+ V D+ + N++I +YS G ++ A
Sbjct: 431 VIRTDVSDEFV--------------------------------QNSLIDMYSKSGSVDSA 458
Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
+F + ++S+++WNSM+ G SQNG+ +EA+ LF M L M++ + +VI AC++I
Sbjct: 459 STVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSI 518
Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
SLE G+ V ++ I GL D T+L+D Y KCG
Sbjct: 519 GSLEKGKWVHHKLIISGL-KDLFTDTALIDMYAKCG 553
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/520 (24%), Positives = 223/520 (42%), Gaps = 112/520 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
+++ C + + + +H +K L+ TL N LL MY +CG+ + +F+++ +
Sbjct: 208 VVEGCAELGCLRIARSVHGQITRKMFDLDETL--CNSLLTMYSKCGDLLSSERIFEKIAK 265
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVM------------------------------- 98
+N SW AMI + + EK+L+ F+ M
Sbjct: 266 KNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSV 325
Query: 99 ----------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
P S L+ +A+ G+L T+ + RN +AWNS+I Y G
Sbjct: 326 HGFAVRRELDPNYESLSL-ALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRG 384
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
+A+ LF+++ + +R++ DAF LA+ I AC + + GKQIH H++ +
Sbjct: 385 MVIQALGLFRQM---VTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVS---- 437
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
D+F ++LI Y+ G ++ A VF++ S
Sbjct: 438 ----------------------------DEFVQNSLIDMYSKSGSVDSASTVFNQIKHRS 469
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
V WNSM+ G+ N EA+ LF M + + + T +V+ ACSS+G LE GK VH
Sbjct: 470 VVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVH- 528
Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
H + + D+ +AL+D Y+K CG +
Sbjct: 529 HKLIISGLKDLFTDTALIDMYAK-------------------------------CGDLNA 557
Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
A+ +FR M ++S++SW+SMI +G A+ F M + + ++ +V+SAC +
Sbjct: 558 AETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGH 617
Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
S+E G+ F + G+ + +D + G +K
Sbjct: 618 SGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLLSRSGDLK 657
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 165/396 (41%), Gaps = 73/396 (18%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L SC I GK +H +++ + + ++ L+++Y CG +D + +
Sbjct: 306 LYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVV 365
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK-------------------------- 101
RN +WN++I + G ++L LF M +
Sbjct: 366 SDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGK 425
Query: 102 ------------NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
++F N LI ++K+G + +A T+FN + R+ + WNSM+ + +NG
Sbjct: 426 QIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGN 485
Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
+ EA+ LF + L+ + VI AC+ + +LE GK +H ++++GL
Sbjct: 486 SVEAISLFDYMYHSY---LEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK----- 537
Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
D F +ALI YA CG +N A VF + S
Sbjct: 538 ---------------------------DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSI 570
Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
V W+SMI+ Y + A+ F++M +G + +VLSAC G +E GK
Sbjct: 571 VSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNL 630
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
GV + + +D S+ G +A + E+
Sbjct: 631 MKSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEM 666
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 36/252 (14%)
Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
D ++ LI YA G + +R VF+ S M+ +I + + A+ L+H++
Sbjct: 33 DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 92
Query: 297 RNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
SVL AC+ G EH G +VHG K GV DD ++ ++LL
Sbjct: 93 SETTQISKFVFPSVLRACA--GSREHLSVGGKVHGRIIKGGVDDDAVIETSLL------- 143
Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
+Y G + DA+ +F MP + L++W++++ +
Sbjct: 144 ------------------------CMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLE 179
Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
NG ++AL +F M + D ++ SV+ CA + L + V ++T D D+ +
Sbjct: 180 NGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETL 239
Query: 474 STSLVDFYCKCG 485
SL+ Y KCG
Sbjct: 240 CNSLLTMYSKCG 251
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 142/522 (27%), Positives = 243/522 (46%), Gaps = 97/522 (18%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL++ + +GKQ+H H K G ++ +AN L+ +Y +CG+ +FD + R
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLF------NVMP------------------------- 99
N SWN++I E +L+ F NV P
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222
Query: 100 ----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
+ N F N L++ + K G+L +++ L R+ + WN+++ +N
Sbjct: 223 QVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ 282
Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSV 208
EA+ +E+ ++E ++ D F +++V+ AC+ L L GK++H++ L NG LD +S
Sbjct: 283 LLEALEYLREM---VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 339
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
+GS+LV++Y NC ++ RRVFD D
Sbjct: 340 VGSALVDMY-------------------------------CNCKQVLSGRRVFDGMFDRK 368
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVH 327
+WN+MI+GY N D EALLLF M + G+L +++T+A V+ AC G + +H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428
Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
G K G+ D V + L+D YS+ G A ++F +++ D + NTMIT Y E
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488
Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447
DA + M N + +S+ S ++ L+ + +L +++ +CA
Sbjct: 489 DALLLLHKMQN--------LERKVSKGAS------------RVSLKPNSITLMTILPSCA 528
Query: 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
+S+L G+++ A L +D + ++LVD Y KCG ++M
Sbjct: 529 ALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQM 570
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/525 (24%), Positives = 228/525 (43%), Gaps = 119/525 (22%)
Query: 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI--- 79
+GKQ+H + L+KG LNS I N L+ MY + G + +L R+ +WN ++
Sbjct: 220 MGKQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 80 ------------------EG-------------------FMKLGHKEKSLQLFNVMPQKN 102
EG ++ G + + L N +N
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337
Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
F + L+ + ++ + R +F+ M R WN+MI Y +N +EA+ LF +
Sbjct: 338 SFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF--IGM 395
Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
+ L ++ +A V+ AC A + IH ++ GLD D + ++L+++Y + G
Sbjct: 396 EESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG- 454
Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
K++ A R+F + D V WN+MI+GY+ +
Sbjct: 455 ------------------------------KIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484
Query: 283 NEDTEALLLFHKMR-----------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
+ALLL HKM+ R + ++ TL ++L +C++L L GK++H +A
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 544
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
K + DV V SAL+D Y+K CG ++ ++
Sbjct: 545 KNNLATDVAVGSALVDMYAK-------------------------------CGCLQMSRK 573
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
+F +P K++I+WN +I+ +G+ EA+DL M ++ ++ + SV +AC++
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633
Query: 452 LELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495
++ G ++F + G++ +VD + G IK + Y LM
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIK-EAYQLM 677
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 167/358 (46%), Gaps = 71/358 (19%)
Query: 132 RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYG 191
R+ W ++ VR+ REAV + ++ +V ++ D + ++ A ADL +E G
Sbjct: 60 RSPEWWIDLLRSKVRSNLLREAVLTYVDM---IVLGIKPDNYAFPALLKAVADLQDMELG 116
Query: 192 KQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
KQIH+H+ G DSV + ++LVNLY KCGDF +
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA------------------------- 151
Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
+VFDR ++ + V WNS+IS S + AL F M V + TL SV
Sbjct: 152 ------VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSV 205
Query: 311 LSACSSLGFLEH---GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
++ACS+L E GKQVH + + G ++ I+
Sbjct: 206 VTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-------------------------- 239
Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
NT++ +Y G++ +K + + + L++WN+++ L QN +EAL+ M
Sbjct: 240 ------NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293
Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLVDFYCKC 484
+ D+F+++SV+ AC+++ L G+++ A G LD + + ++LVD YC C
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 83/369 (22%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
++ +L +C+ + GK+LH + LK G L+ + + L+ MY C +FD M
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----------------NVMP----------- 99
R WNAMI G+ + H +++L LF V+P
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424
Query: 100 ------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
++ F N L+ +++ G++ A +F M R+ + WN+MI YV +
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484
Query: 148 GFAREAVRLFKELNSDLVER----------LQCDAFILATVIGACADLAALEYGKQIHSH 197
+A+ L ++ + +ER L+ ++ L T++ +CA L+AL GK+IH++
Sbjct: 485 EHHEDALLLLHKMQN--LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542
Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
+ N L D +GS+LV++Y KCG C +M +
Sbjct: 543 AIKNNLATDVAVGSALVDMYAKCG-----------------------------CLQM--S 571
Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
R+VFD+ + + WN +I Y + EA+ L M GV + T SV +ACS
Sbjct: 572 RKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHS 631
Query: 318 GFLEHGKQV 326
G ++ G ++
Sbjct: 632 GMVDEGLRI 640
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 36/222 (16%)
Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
S W ++ + +N EA+L + M G+ D ++L A + L +E GKQ+H
Sbjct: 61 SPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIH 120
Query: 328 GHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
H K G +D V VA NT++ +Y CG
Sbjct: 121 AHVYKFGYGVDSVTVA-------------------------------NTLVNLYRKCGDF 149
Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
+F + ++ +SWNS+I L AL+ F M ++ F+L SV++AC
Sbjct: 150 GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTAC 209
Query: 447 ANISSLE---LGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
+N+ E +G+QV A G + II+T LV Y K G
Sbjct: 210 SNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLG 250
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 43/313 (13%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L SC ++ GK++H + +K L + + + + L+ MY +CG + +FD++
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNN-LATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
P++N +WN +I + G+ ++++ L +M + N+ ++ + + + +G +
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638
Query: 124 TLFNDM-PRRNAIAWNSMIHCYV----RNGFAREAVRLFKELNSDLVERLQCDAFILAT- 177
+F M P + C V R G +EA +L + D + + + A+
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASR 698
Query: 178 -----VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
IG A ++ + SH ++ L N+Y G ++ A +V
Sbjct: 699 IHNNLEIGEIAAQNLIQLEPNVASHYVL------------LANIYSSAGLWDKATEVRRN 746
Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
MKE + C + V SS + +SGY+ L+
Sbjct: 747 MKEQG-------VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLET--------LW 791
Query: 293 HKMRRNGVLEDAS 305
+MR+ G + D S
Sbjct: 792 ERMRKEGYVPDTS 804
>sp|Q9M9R6|PPR43_ARATH Pentatricopeptide repeat-containing protein At1g14470
OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2
Length = 540
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 221/422 (52%), Gaps = 36/422 (8%)
Query: 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN 102
+ N ++ MY++ + A +FD++ +R WN MI G+ K G+KE++ +LF++MP+ +
Sbjct: 138 VRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPEND 197
Query: 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
SW ++I+GFAK +L+ AR F+ MP ++ ++WN+M+ Y +NGF +A+RLF ++
Sbjct: 198 VVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDM-- 255
Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
L ++ + VI AC+ A + + I + + + ++L++++ KC D
Sbjct: 256 -LRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRD 314
Query: 223 FNSANQVLNMMKEPDDFC-LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
SA ++ N + + +A+ISGY G M+ AR++FD + V WNS+I+GY
Sbjct: 315 IQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAH 374
Query: 282 NNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340
N + A+ F M G D T+ SVLSAC + LE G D I
Sbjct: 375 NGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELG--------------DCI 420
Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
V Y ++ +++K+ D+ ++I +Y+ G + +AK +F M +
Sbjct: 421 V------DYIRK----------NQIKLNDS-GYRSLIFMYARGGNLWEAKRVFDEMKERD 463
Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
++S+N++ + NG +E L+L M + D+ + SV++AC L+ G+++F
Sbjct: 464 VVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFK 523
Query: 461 RV 462
+
Sbjct: 524 SI 525
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 196/405 (48%), Gaps = 35/405 (8%)
Query: 82 FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
F +L L +FN +P+++ ++ ++ R +F+ + N NSM
Sbjct: 19 FPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMF 78
Query: 142 HCYVRNGFAREAVRLFKE-------------------------LNSDLVERLQC--DAFI 174
+ + A + +RL+++ L LVE+L D ++
Sbjct: 79 KYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGILFQALVEKLGFFKDPYV 138
Query: 175 LATVIGACADLAALEYGKQIHSHI-LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
++ ++E +++ I G D++ ++ Y K G+ A ++ +MM
Sbjct: 139 RNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISG-----YWKWGNKEEACKLFDMM 193
Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
E D + +I+G+A + +AR+ FDR + S V WN+M+SGY N +AL LF+
Sbjct: 194 PENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFN 253
Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
M R GV + +T V+SACS + + + V + V +ALLD ++K
Sbjct: 254 DMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCR 313
Query: 354 MPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
A ++F+EL + + N MI+ Y+ G + A+ +F TMP ++++SWNS+I G +
Sbjct: 314 DIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYA 373
Query: 413 QNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGE 456
NG A++ F +M + D + D+ ++ SV+SAC +++ LELG+
Sbjct: 374 HNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGD 418
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 36/258 (13%)
Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
R +FD T + + NSM + + + L L+ + R G++ DA + V+ +
Sbjct: 60 RLIFDSVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRF 119
Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR------------------------- 352
G L K+G D V + ++D Y K
Sbjct: 120 GIL-----FQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMI 174
Query: 353 ------GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
G +ACKLF + D + MIT ++ +E+A+ F MP KS++SWN+
Sbjct: 175 SGYWKWGNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNA 234
Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
M+ G +QNG +AL LF +M +L +R ++ + VISAC+ + L + +
Sbjct: 235 MLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKR 294
Query: 467 LDSDQIISTSLVDFYCKC 484
+ + + T+L+D + KC
Sbjct: 295 VRLNCFVKTALLDMHAKC 312
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 201 bits (512), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 136/518 (26%), Positives = 241/518 (46%), Gaps = 108/518 (20%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
A LL+ C++ + +Q+ K G+ +L+ ++ R G+ +A +F+ +
Sbjct: 41 ALLLERCSSLKEL---RQILPLVFKNGLYQEHF-FQTKLVSLFCRYGSVDEAARVFEPID 96
Query: 69 RRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLISG---------- 112
+ ++ M++GF K+ +K+LQ F +V P +F++ + + G
Sbjct: 97 SKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 113 -----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
+AK ++ AR +F+ MP R+ ++WN+++ Y +NG
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216
Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
AR A+ + K + E L+ + +V+ A + L + GK+IH + + +G D
Sbjct: 217 ARMALEMVKSMCE---ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD----- 268
Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
SLVN+ +AL+ YA CG + AR++FD + +
Sbjct: 269 --SLVNIS------------------------TALVDMYAKCGSLETARQLFDGMLERNV 302
Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
V WNSMI Y+ N EA+L+F KM GV ++ L AC+ LG LE G+ +H
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
+ ++G+ +V V +N++I++Y C ++ A
Sbjct: 363 SVELGLDRNVSV-------------------------------VNSLISMYCKCKEVDTA 391
Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
+F + +++L+SWN+MI+G +QNG PI+AL+ F M ++ D F+ SVI+A A +
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451
Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
S + + V LD + ++T+LVD Y KCG I
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 215/488 (44%), Gaps = 105/488 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL+ C + VGK++H +K G + L L MY +C +A +FD MP R
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSG-FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---------------------------- 102
+ SWN ++ G+ + G +L++ M ++N
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259
Query: 103 --------DFSWNM---LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
D N+ L+ +AK G L+TAR LF+ M RN ++WNSMI YV+N +
Sbjct: 260 GYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPK 319
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
EA+ +F+++ + V+ D ++ + ACADL LE G+ IH + GLD +
Sbjct: 320 EAMLIFQKMLDEGVK--PTDVSVMGA-LHACADLGDLERGRFIHKLSVELGLDRNV---- 372
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
S+VN +LIS Y C +++ A +F + + V
Sbjct: 373 SVVN---------------------------SLISMYCKCKEVDTAASMFGKLQSRTLVS 405
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
WN+MI G+ N +AL F +MR V D T SV++A + L H K +HG
Sbjct: 406 WNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVM 465
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
+ + +V V +AL+D Y+K CG I A+
Sbjct: 466 RSCLDKNVFVTTALVDMYAK-------------------------------CGAIMIARL 494
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
IF M + + +WN+MI G +G AL+LF M K ++ + + SVISAC++
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554
Query: 452 LELGEQVF 459
+E G + F
Sbjct: 555 VEAGLKCF 562
>sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540
OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1
Length = 700
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/518 (27%), Positives = 248/518 (47%), Gaps = 82/518 (15%)
Query: 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP---IANRLLQMYMRCGNPTDALLLFDE 66
RL +SC++ + +++ H + S LP + NR ++ Y +CG DA LF+E
Sbjct: 66 RLFRSCSSKALVVQARKVQSHL----VTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEE 121
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------------------------- 100
MP R+ SWNA+I + G ++ ++F M +
Sbjct: 122 MPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLL 181
Query: 101 --------KNDFSWNM-----LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
K +S N+ ++ + K + AR +F+++ + ++WN ++ Y+
Sbjct: 182 RQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEM 241
Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
GF EAV +F ++ V L +++V+ AC+ ALE GK IH+ + + D+
Sbjct: 242 GFNDEAVVMFFKMLELNVRPLN---HTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADT 298
Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
V+ +S+ ++Y KC SA +V + + D ++ +SGYA G +AR +FD +
Sbjct: 299 VVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPER 358
Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
+ V WN+M+ GY+ +E EAL MR+ D TL +L+ CS + ++ GKQ H
Sbjct: 359 NIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAH 418
Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
G + G +VIVA+ALLD Y K CG ++
Sbjct: 419 GFIYRHGYDTNVIVANALLDMYGK-------------------------------CGTLQ 447
Query: 388 DAKHIFRTMPN-KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
A FR M + +SWN+++ G+++ G +AL F M +++ + K++LA++++ C
Sbjct: 448 SANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM-QVEAKPSKYTLATLLAGC 506
Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
ANI +L LG+ + + G D +I ++VD Y KC
Sbjct: 507 ANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKC 544
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 196/404 (48%), Gaps = 34/404 (8%)
Query: 93 QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
L P F N I + K G + AR LF +MP R+ +WN++I +NG + E
Sbjct: 86 HLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDE 145
Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
R+F+ +N D V + A V+ +C + L +Q+H ++ G + L +S
Sbjct: 146 VFRMFRRMNRDGVRATETS---FAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETS 202
Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
+V++YGKC M+DARRVFD + S V W
Sbjct: 203 IVDVYGKCR-------------------------------VMSDARRVFDEIVNPSDVSW 231
Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
N ++ Y+ + EA+++F KM V T++SV+ ACS LE GK +H A K
Sbjct: 232 NVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVK 291
Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
+ V+ D +V++++ D Y K A ++F + + D + ++ Y+ G +A+ +
Sbjct: 292 LSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREAREL 351
Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
F MP ++++SWN+M+ G EALD M + +D +L +++ C+ IS +
Sbjct: 352 FDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDV 411
Query: 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
++G+Q + G D++ I++ +L+D Y KCG ++ + Q
Sbjct: 412 QMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQ 455
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/490 (23%), Positives = 212/490 (43%), Gaps = 100/490 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
++ ++ +C+ ++ VGK +H +K ++ T+ ++ + MY++C A +FD+
Sbjct: 266 VSSVMLACSRSLALEVGKVIHAIAVKLSVVADTV-VSTSVFDMYVKCDRLESARRVFDQT 324
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
++ SW + + G+ G ++ +LF++MP++N SWN ++ G+ A E
Sbjct: 325 RSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHE--------- 375
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
W+ + F L +E + D L ++ C+ ++
Sbjct: 376 ---------WDEALD--------------FLTLMRQEIENI--DNVTLVWILNVCSGISD 410
Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALIS 246
++ GKQ H I +G D + ++ ++L+++YGKCG SAN M E D+ +AL++
Sbjct: 411 VQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLT 470
Query: 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306
G A G+ +AL F M+ T
Sbjct: 471 GVARVGR-------------------------------SEQALSFFEGMQVEAK-PSKYT 498
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
LA++L+ C+++ L GK +HG + G DV++ A++D YSK C+ F
Sbjct: 499 LATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSK-------CRCF---- 547
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
+ A +F+ + LI WNS+I G +NG E +LF
Sbjct: 548 --------------------DYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFML 587
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS-LVDFYCKCG 485
+ ++ D + ++ AC +ELG Q F+ ++ S Q+ +++ YCK G
Sbjct: 588 LENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELYCKYG 647
Query: 486 FIKMDEYYLM 495
+ E +L+
Sbjct: 648 CLHQLEEFLL 657
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/478 (28%), Positives = 220/478 (46%), Gaps = 101/478 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L+Q C+ ++ GK++H H G + + I NRLL+MY +CG+ DA
Sbjct: 91 LIQVCSQTRALEEGKKVHEHIRTSGFVPGIV-IWNRLLRMYAKCGSLVDAR--------- 140
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
++F+ MP ++ SWN++++G+A+ G L+ AR LF++M
Sbjct: 141 ----------------------KVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMT 178
Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
+++ +W +M+ YV+ EA+ L+ + V + + F ++ + A A + +
Sbjct: 179 EKDSYSWTAMVTGYVKKDQPEEALVLYSLMQR--VPNSRPNIFTVSIAVAAAAAVKCIRR 236
Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
GK+IH HI+ GLD D VL SSL+++YGK
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGK------------------------------- 265
Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
CG +++AR +FD+ + V W SMI Y ++ E LF ++ + + T A V
Sbjct: 266 CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGV 325
Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370
L+AC+ L E GKQVHG+ +VG +S+L+D Y+K
Sbjct: 326 LNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTK------------------- 366
Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
CG IE AKH+ P L+SW S+I G +QNG P EAL F + K
Sbjct: 367 ------------CGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKS 414
Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVT---IIGLDSDQIISTSLVDFYCKCG 485
+ D + +V+SAC + +E G + F +T + SD T LVD + G
Sbjct: 415 GTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHY--TCLVDLLARSG 470
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 173/339 (51%), Gaps = 39/339 (11%)
Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
REAV+L + A +I C+ ALE GK++H HI +G V+
Sbjct: 71 REAVQLLGRAK-------KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIW 123
Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
+ L+ +Y KCG A +V + M D + +++GYA G + +AR++FD T+ S
Sbjct: 124 NRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSY 183
Query: 271 MWNSMISGYISNNEDTEALLLFHKMRR-NGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
W +M++GY+ ++ EAL+L+ M+R + T++ ++A +++ + GK++HGH
Sbjct: 184 SWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGH 243
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
+ G+ D ++ S+L+D Y K CG I++A
Sbjct: 244 IVRAGLDSDEVLWSSLMDMYGK-------------------------------CGCIDEA 272
Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
++IF + K ++SW SMI ++ E LF + R ++++ A V++ACA++
Sbjct: 273 RNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADL 332
Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
++ ELG+QV +T +G D S+SLVD Y KCG I+
Sbjct: 333 TTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIE 371
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 228/491 (46%), Gaps = 76/491 (15%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N L+ +R G+ A +FD MP R+ SWNAMI+G+++ E++ LF M +KN
Sbjct: 173 NTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVV 232
Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
+W ++ G+ + G+++ A LF +MP RN ++W +MI + N REA+ LF E+ D
Sbjct: 233 TWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKD- 291
Query: 165 VERLQCDAFILATVIGACADLAALEY---GKQIHSHILVNG---LDFDSVLGSSLVNLYG 218
V+ + + L ++ AC L +E+ G+Q+H+ ++ NG +D D L SLV++Y
Sbjct: 292 VDAVSPNGETLISLAYACGGLG-VEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYA 350
Query: 219 KCGDFNSANQVLN------------------------------MMKEPDDFCLSALISGY 248
G SA +LN + D +++I GY
Sbjct: 351 SSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGY 410
Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
G ++ A +F + D V W MISG + N EA L M R G+ ST +
Sbjct: 411 LEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYS 470
Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
+LS+ + L+ GK +H C + Y
Sbjct: 471 VLLSSAGATSNLDQGKHIH-------------------------------CVIAKTTACY 499
Query: 369 DT--ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
D IL N+++++Y+ CG IEDA IF M K +SWNSMI+GLS +G +AL+LF
Sbjct: 500 DPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKE 559
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCK 483
M + + + V+SAC++ + G ++F I D I S++D +
Sbjct: 560 MLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYI--SMIDLLGR 617
Query: 484 CGFIKMDEYYL 494
G +K E ++
Sbjct: 618 AGKLKEAEEFI 628
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 204/449 (45%), Gaps = 77/449 (17%)
Query: 55 GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114
G DA+ LFDEMP RN SWN ++ G ++ G EK+ Q+F+ MP ++ SWN +I G+
Sbjct: 152 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 211
Query: 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS------------ 162
+ ++ A+ LF DM +N + W SM++ Y R G REA RLF E+
Sbjct: 212 ENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISG 271
Query: 163 ------------------DLVERLQCDAFILATVIGACADLAALEY---GKQIHSHILVN 201
V+ + + L ++ AC L +E+ G+Q+H+ ++ N
Sbjct: 272 FAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGL-GVEFRRLGEQLHAQVISN 330
Query: 202 G---LDFDSVLGSSLVNLYGKCGDFNSANQVLN--------------------------- 231
G +D D L SLV++Y G SA +LN
Sbjct: 331 GWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLERAETL 390
Query: 232 ---MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEA 288
+ D +++I GY G ++ A +F + D V W MISG + N EA
Sbjct: 391 FERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEA 450
Query: 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVIVASALL 346
L M R G+ ST + +LS+ + L+ GK +H K D+I+ ++L+
Sbjct: 451 ASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLV 510
Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM------PNKS 400
Y+K G DA ++F+++ DT+ N+MI S G + A ++F+ M PN
Sbjct: 511 SMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNS- 569
Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNK 429
+++ ++ S +G L+LF M +
Sbjct: 570 -VTFLGVLSACSHSGLITRGLELFKAMKE 597
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/499 (25%), Positives = 214/499 (42%), Gaps = 76/499 (15%)
Query: 65 DEMP-----RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----WNMLISGFAK 115
D++P RR + A+I + G + L + +PQ+ + W L+S +AK
Sbjct: 30 DKIPNYGSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAK 89
Query: 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV---------- 165
G L AR LF MP RN + N+M+ YV+ EA LF+E+ ++V
Sbjct: 90 TGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPKNVVSWTVMLTALC 149
Query: 166 -------------ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
E + + T++ +E KQ+ + D V ++
Sbjct: 150 DDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSR----DVVSWNA 205
Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
++ Y + A + M E + ++++ GY G + +A R+F + + V W
Sbjct: 206 MIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSW 265
Query: 273 NSMISGYISNNEDTEALLLFHKMRR--NGVLEDASTLASVLSACSSLG--FLEHGKQVHG 328
+MISG+ N EAL+LF +M++ + V + TL S+ AC LG F G+Q+H
Sbjct: 266 TAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHA 325
Query: 329 HACKVG---VIDDVIVASALLDTYSKRGMPSDACKLFSE--------------LK----- 366
G V D +A +L+ Y+ G+ + A L +E LK
Sbjct: 326 QVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIIINRYLKNGDLE 385
Query: 367 -----------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
++D + +MI Y G + A +F+ + +K ++W MI GL QN
Sbjct: 386 RAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNE 445
Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV--TIIGLDSDQII 473
EA L +M + L+ + + ++S+ S+L+ G+ + + T D D I+
Sbjct: 446 LFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLIL 505
Query: 474 STSLVDFYCKCGFIKMDEY 492
SLV Y KCG I+ D Y
Sbjct: 506 QNSLVSMYAKCGAIE-DAY 523
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 27/259 (10%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKK-GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
LL S ++ GK +H K + L + N L+ MY +CG DA +F +M +
Sbjct: 472 LLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQ 531
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTARTL 125
++ SWN+MI G G +K+L LF M + N ++ ++S + +G + L
Sbjct: 532 KDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLEL 591
Query: 126 FNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
F M +I + SMI R G +EA L D + ++G
Sbjct: 592 FKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALP------FTPDHTVYGALLG 645
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGS---SLVNLYGKCGDFNSANQVLNMM---- 233
C + + I + L+ D V +L N+Y G + ++ M
Sbjct: 646 LCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIKG 705
Query: 234 --KEPDDFCLSALISGYAN 250
K P C +++G AN
Sbjct: 706 VKKTPG--CSWVVVNGRAN 722
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 238/482 (49%), Gaps = 50/482 (10%)
Query: 19 HSIHVGKQLHLHFLKKGILNS----TLPIANRLLQMYMRCGNPTDALLLFDEM------P 68
S +G + L F K+ NS T + N L++ Y G +A+LLF M P
Sbjct: 73 RSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISP 132
Query: 69 RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTART 124
+ F + + K K +Q+ ++ + K+ F N L+ +A+ GEL +AR
Sbjct: 133 DKYTFPFG--LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARK 190
Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD 184
+F++M RN ++W SMI Y R FA++AV LF + D E + ++ + VI ACA
Sbjct: 191 VFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRD--EEVTPNSVTMVCVISACAK 248
Query: 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244
L LE G+++++ I +G+ E +D +SAL
Sbjct: 249 LEDLETGEKVYAFIRNSGI-------------------------------EVNDLMVSAL 277
Query: 245 ISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304
+ Y C ++ A+R+FD ++ + N+M S Y+ EAL +F+ M +GV D
Sbjct: 278 VDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 337
Query: 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364
++ S +S+CS L + GK HG+ + G + +AL+D Y K A ++F
Sbjct: 338 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 397
Query: 365 LKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424
+ + N+++ Y G ++ A F TMP K+++SWN++I GL Q EA+++F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
Query: 425 CNMNKLD-LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
C+M + + D ++ S+ SAC ++ +L+L + ++ + G+ D + T+LVD + +
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517
Query: 484 CG 485
CG
Sbjct: 518 CG 519
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/519 (23%), Positives = 234/519 (45%), Gaps = 77/519 (14%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C + G Q+H +K G L + N L+ Y CG A +FDEM RN
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKD-LFVQNSLVHFYAECGELDSARKVFDEMSERN 199
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLF-------NVMP------------------------- 99
SW +MI G+ + + ++ LF V P
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259
Query: 100 --------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
+ ND + L+ + K + A+ LF++ N N+M YVR G R
Sbjct: 260 AFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
EA+ +F N + ++ D + + I +C+ L + +GK H ++L NG + + +
Sbjct: 320 EALGVF---NLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
+L+++Y KC ++A ++ + M +++++GY G+++ A F+ + + V
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436
Query: 272 WNSMISGYISNNEDTEALLLFHKMR-RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
WN++ISG + + EA+ +F M+ + GV D T+ S+ SAC LG L+ K ++ +
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496
Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
K G+ DV + + L+D +S+ CG E A
Sbjct: 497 EKNGIQLDVRLGTTLVDMFSR-------------------------------CGDPESAM 525
Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
IF ++ N+ + +W + I ++ G+ A++LF +M + L+ D + ++AC++
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585
Query: 451 SLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
++ G+++F + + + G+ + + +VD + G ++
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLE 624
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 359 CKLFSELKVY-----------DTILLNTMITVYSSCGRIED---AKHIFRTMPN-KSLIS 403
CK ELK++ D + ++ G E AK +F + +
Sbjct: 42 CKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFM 101
Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
+NS+I G + +G EA+ LF M + DK++ +SACA + G Q+ +
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 464 IIGLDSDQIISTSLVDFYCKCG 485
+G D + SLV FY +CG
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECG 183
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 235/463 (50%), Gaps = 47/463 (10%)
Query: 40 TLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVM 98
+L + N++L+ + T L LF E+ + + N + +K +G K ++ V
Sbjct: 10 SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVH 69
Query: 99 P-------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
+ + + N L+ +A G+++ +F++MP+R+ ++WN +I YV NG
Sbjct: 70 GYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFE 129
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
+A+ +FK ++ + L+ D + + + AC+ L LE G++I+ + V + +G+
Sbjct: 130 DAIGVFKRMSQE--SNLKFDEGTIVSTLSACSALKNLEIGERIYRFV-VTEFEMSVRIGN 186
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
+LV+++ KCG + A V + M++ + C ++++ GY + G++++AR +F+R+ V+
Sbjct: 187 ALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVL 246
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
W +M++GY+ N EAL LF M+ G+ D L S+L+ C+ G LE GK +HG+
Sbjct: 247 WTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIN 306
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
+ V D +V +AL+D Y+K G A ++F E+K DT
Sbjct: 307 ENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDT--------------------- 345
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
SW S+I GL+ NG ALDL+ M + +R+D + +V++AC +
Sbjct: 346 ----------ASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGF 395
Query: 452 LELGEQVFARVTI---IGLDSDQIISTSLVDFYCKCGFIKMDE 491
+ G ++F +T + S+ + L+D C+ G + E
Sbjct: 396 VAEGRKIFHSMTERHNVQPKSEH--CSCLIDLLCRAGLLDEAE 436
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 159/363 (43%), Gaps = 75/363 (20%)
Query: 76 NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
NA+++ F K G +K+ +F+ M KN W ++ G+ G + AR LF P ++ +
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245
Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
W +M++ YV+ EA+ LF+ + + ++ D F+L +++ CA ALE GK IH
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQT---AGIRPDNFVLVSLLTGCAQTGALEQGKWIH 302
Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
+I N + D V+G++LV++Y K CG +
Sbjct: 303 GYINENRVTVDKVVGTALVDMYAK-------------------------------CGCIE 331
Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
A VF + + W S+I G N AL L+++M GV DA T +VL+AC+
Sbjct: 332 TALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACN 391
Query: 316 SLGFLEHGKQVHGHA---------------------CKVGVIDD---------------- 338
GF+ G+++ H+ C+ G++D+
Sbjct: 392 HGGFVAEGRKIF-HSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETL 450
Query: 339 VIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
V V +LL Y + + +++V D+ + +VY+S R ED ++ R
Sbjct: 451 VPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRK 510
Query: 396 MPN 398
M +
Sbjct: 511 MKD 513
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 143/520 (27%), Positives = 236/520 (45%), Gaps = 87/520 (16%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
A +L+SC + +G QLH H LK + + L MY +C N DA +LFD
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSE 343
Query: 69 RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
N S+NAMI G+ + H K+L LF+ +
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403
Query: 101 ------KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
K+ S N I + K L A +F++M RR+A++WN++I + +NG
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463
Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
E + LF + L R++ D F +++ AC +L YG +IHS I+ +G+ +S +
Sbjct: 464 GYETLFLFVSM---LRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSV 519
Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
G SL+++Y KCG A ++ F A +SG M + ++ ++
Sbjct: 520 GCSLIDMYSKCGMIEEAEKI------HSRFFQRANVSG-----TMEELEKMHNKRLQEMC 568
Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
V WNS+ISGY+ + +A +LF +M G+ D T A+VL C++L GKQ+H
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
K + DV + S L+D YSK CG + D+
Sbjct: 629 VIKKELQSDVYICSTLVDMYSK-------------------------------CGDLHDS 657
Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
+ +F + ++WN+MI G + +G EA+ LF M +++ + + S++ ACA++
Sbjct: 658 RLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHM 717
Query: 450 SSLELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
++ G + F + GLD +++VD K G +K
Sbjct: 718 GLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 757
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/551 (24%), Positives = 233/551 (42%), Gaps = 137/551 (24%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+ + C ++ +GKQ H H + G +T + N LLQ+Y + A ++FD+MP R
Sbjct: 54 VFKECAKQGALELGKQAHAHMIISGFRPTTF-VLNCLLQVYTNSRDFVSASMVFDKMPLR 112
Query: 71 NCFSWNAMI-------------------------------EGFMKLGHKEKSLQLFNVMP 99
+ SWN MI G+++ G KS+++F M
Sbjct: 113 DVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG 172
Query: 100 QK-------------------NDFSWNMLISG--------------------FAKAGELK 120
++ D S M I G +AK
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 232
Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
+ +F +P +N+++W+++I V+N A++ FKE+ Q I A+V+
Sbjct: 233 ESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS---IYASVLR 289
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
+CA L+ L G Q+H+H L + D ++ ++ +++Y KC +
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDN------------------ 331
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
M DA+ +FD + + + +N+MI+GY +ALLLFH++ +G+
Sbjct: 332 -------------MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL 378
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
D +L+ V AC+ + L G Q++G A K + DV VA+A +D Y K
Sbjct: 379 GFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGK--------- 429
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
C + +A +F M + +SWN++I QNG E
Sbjct: 430 ----------------------CQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYET 467
Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
L LF +M + + D+F+ S++ AC SL G ++ + + G+ S+ + SL+D
Sbjct: 468 LFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDM 526
Query: 481 YCKCGFIKMDE 491
Y KCG I+ E
Sbjct: 527 YSKCGMIEEAE 537
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/517 (25%), Positives = 230/517 (44%), Gaps = 86/517 (16%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A +L+ C+ +G Q+H ++ G ++ + A+ LL MY + ++L +F +
Sbjct: 183 FAIILKVCSFLEDTSLGMQIHGIVVRVGC-DTDVVAASALLDMYAKGKRFVESLRVFQGI 241
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
P +N SW+A+I G ++ +L+ F M +
Sbjct: 242 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGG 301
Query: 101 -------KNDFSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
K+DF+ + ++ +AK ++ A+ LF++ N ++N+MI Y +
Sbjct: 302 QLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEE 361
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
+A+ LF L S L D L+ V ACA + L G QI+ + + L D
Sbjct: 362 HGFKALLLFHRLMSS---GLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVC 418
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
+ ++ +++YGKC A +V + M+ D
Sbjct: 419 VANAAIDMYGKCQALAEAFRVFDEMRRRD------------------------------- 447
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
+V WN++I+ + N + E L LF M R+ + D T S+L AC+ G L +G ++H
Sbjct: 448 AVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHS 506
Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
K G+ + V +L+D YSK GM +A K+ S + G +E+
Sbjct: 507 SIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV-----------SGTMEE 555
Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
+ + + +SWNS+I G +A LF M ++ + DKF+ A+V+ CAN
Sbjct: 556 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 615
Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
++S LG+Q+ A+V L SD I ++LVD Y KCG
Sbjct: 616 LASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCG 652
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 196/395 (49%), Gaps = 37/395 (9%)
Query: 93 QLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP-RRNAIAWNSMIHCYVRNGFAR 151
++F+ + +K++ SW +++G+ K G L M +A+N+MI YV GF +
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
EA+ + + + S +E D F +VI ACA L+ GKQ+H+++L DF +
Sbjct: 269 EALEMVRRMVSSGIE---LDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDN 324
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
SLV+LY KCG F+ A + M D +AL+SGY + G + +A+ +F + + +
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
W MISG N E L LF M+R G + + +C+ LG +G+Q H
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
K+G D + A N +IT+Y+ CG +E+A+
Sbjct: 445 KIG-FDSSLSAG------------------------------NALITMYAKCGVVEEARQ 473
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
+FRTMP +SWN++I L Q+G EA+D++ M K +R D+ +L +V++AC++
Sbjct: 474 VFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGL 533
Query: 452 LELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
++ G + F + T+ + L+D C+ G
Sbjct: 534 VDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSG 568
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/436 (27%), Positives = 219/436 (50%), Gaps = 14/436 (3%)
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
++ F PR + N +I+ + K + QLF+ + + + + ++SG+ +G++
Sbjct: 40 IITFGFQPRAHIL--NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDIT 97
Query: 121 TARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
AR +F P R+ + +N+MI + N A+ LF ++ E + D F A+V
Sbjct: 98 LARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKH---EGFKPDNFTFASV 154
Query: 179 IGACADLAALEYG-KQIHSHILVNGLDFDSVLGSSLVNLYGKCGD----FNSANQVLNMM 233
+ A +A E Q H+ L +G + + + ++LV++Y KC +SA +V + +
Sbjct: 155 LAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEI 214
Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS-VMWNSMISGYISNNEDTEALLLF 292
E D+ + +++GY G + + + D V +N+MISGY++ EAL +
Sbjct: 215 LEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMV 274
Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
+M +G+ D T SV+ AC++ G L+ GKQVH + + ++L+ Y K
Sbjct: 275 RRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS-FHFDNSLVSLYYKC 333
Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
G +A +F ++ D + N +++ Y S G I +AK IF+ M K+++SW MI GL+
Sbjct: 334 GKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLA 393
Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
+NG E L LF M + ++ + I +CA + + G+Q A++ IG DS
Sbjct: 394 ENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLS 453
Query: 473 ISTSLVDFYCKCGFIK 488
+L+ Y KCG ++
Sbjct: 454 AGNALITMYAKCGVVE 469
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 146/315 (46%), Gaps = 67/315 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
++++C T + +GKQ+H + L++ + + N L+ +Y +CG +A +F++MP +
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRRE--DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK 349
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
+ SWNA++ G++ GH ++ +F M +KN SW ++ISG A+
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAE--------------- 394
Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
NGF E ++LF + + E CD + + I +CA L A
Sbjct: 395 ----------------NGFGEEGLKLFSCMKREGFE--PCD-YAFSGAIKSCAVLGAYCN 435
Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
G+Q H+ +L G D G++L+ +Y KCG A QV M CL
Sbjct: 436 GQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP-----CL--------- 481
Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
SV WN++I+ + EA+ ++ +M + G+ D TL +V
Sbjct: 482 -----------------DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTV 524
Query: 311 LSACSSLGFLEHGKQ 325
L+ACS G ++ G++
Sbjct: 525 LTACSHAGLVDQGRK 539
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
++SC + G+Q H LK G +S+L N L+ MY +CG +A +F MP +
Sbjct: 424 IKSCAVLGAYCNGQQYHAQLLKIG-FDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLD 482
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTARTLFN 127
SWNA+I + GH +++ ++ M +K + + +++ + AG + R F+
Sbjct: 483 SVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFD 542
Query: 128 DM 129
M
Sbjct: 543 SM 544
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 213/429 (49%), Gaps = 42/429 (9%)
Query: 43 IANRLLQMYMRCGNPTDALLLFDEMP----RRNCFSWNAMIEGFMKLGHKEKSLQL---- 94
+ N L+ R P +L + + R + FS+ +++ K+ + ++L
Sbjct: 78 VFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVA 137
Query: 95 FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
F + + F + +A G + AR +F++M R+ + WN+MI Y R G EA
Sbjct: 138 FKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAF 197
Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
+LF+E+ V D IL ++ AC + Y + I+ ++ N + D+ L ++LV
Sbjct: 198 KLFEEMKDSNV---MPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALV 254
Query: 215 NLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274
+Y G + A + M + F +A++SGY+ CG+++DA+ +FD+T V W +
Sbjct: 255 TMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTT 314
Query: 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334
MIS Y+ ++ EAL +F +M +G+ D ++ SV+SAC++LG L+ K VH G
Sbjct: 315 MISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNG 374
Query: 335 VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
L SEL + N +I +Y+ CG ++ + +F
Sbjct: 375 --------------------------LESELSIN-----NALINMYAKCGGLDATRDVFE 403
Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
MP ++++SW+SMI LS +G +AL LF M + ++ ++ + V+ C++ +E
Sbjct: 404 KMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEE 463
Query: 455 GEQVFARVT 463
G+++FA +T
Sbjct: 464 GKKIFASMT 472
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 135/249 (54%)
Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296
D F + + YA+CG++N AR VFD + V WN+MI Y EA LF +M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356
+ V+ D L +++SAC G + + + ++ + V D + +AL+ Y+ G
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGS 416
A + F ++ V + + M++ YS CGR++DA+ IF K L+ W +MI ++
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
P EAL +F M ++ D S+ SVISACAN+ L+ + V + + + GL+S+ I+ +
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384
Query: 477 LVDFYCKCG 485
L++ Y KCG
Sbjct: 385 LINMYAKCG 393
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/421 (23%), Positives = 184/421 (43%), Gaps = 86/421 (20%)
Query: 76 NAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI 135
A++ + G + + + F M +N F ++SG++K G L A+ +F+ +++ +
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLV 310
Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
W +MI YV + + +EA+R+F+E+ ++ D + +VI ACA+L L+ K +H
Sbjct: 311 CWTTMISAYVESDYPQEALRVFEEM---CCSGIKPDVVSMFSVISACANLGILDKAKWVH 367
Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
S I VNGL+ + + ++L+N+Y K CG ++
Sbjct: 368 SCIHVNGLESELSINNALINMYAK-------------------------------CGGLD 396
Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
R VF++ + V W+SMI+ + E ++AL LF +M++ V + T VL CS
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456
Query: 316 SLGFLEHGKQVHG--------------HACKVGVIDDVIVASALLDTYSKRGMPSD---- 357
G +E GK++ + C V + + L+ + S+
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516
Query: 358 -----ACKLFSELKV--------------YDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398
AC++ EL++ +D L+ M +Y+ R ED ++I R M
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALV-LMSNIYAREQRWEDVRNIRRVMEE 575
Query: 399 KSLISWNSMIVGLSQNGSPIEAL----------DLFCNMNKLDLRMDKFSLASVISACAN 448
K++ + + QNG E L +++ KLD + K LA + C +
Sbjct: 576 KNVFKEKGL-SRIDQNGKSHEFLIGDKRHKQSNEIYA---KLDEVVSKLKLAGYVPDCGS 631
Query: 449 I 449
+
Sbjct: 632 V 632
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 14/228 (6%)
Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
+ S+++N + ++E +L + ++R G D + +L A S + L G
Sbjct: 72 SPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131
Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
++HG A K+ + D V + +D Y+ G + A +F E+ D + NTMI Y G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191
Query: 385 RIEDAKHIFRTMPNKSLISWNSMIV-------GLSQNGSPIEALDLFCNMNKLDLRMDKF 437
+++A +F M + +++ + MI+ G + N A+ F N D+RMD
Sbjct: 192 LVDEAFKLFEEMKDSNVMP-DEMILCNIVSACGRTGNMRYNRAIYEFLIEN--DVRMDTH 248
Query: 438 SLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
L ++++ A +++ + F ++++ L +ST++V Y KCG
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVRNL----FVSTAMVSGYSKCG 292
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 37 LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFN 96
L S L I N L+ MY +CG +F++MPRRN SW++MI G +L LF
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFA 434
Query: 97 VMPQK----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIA-----WNSMIHCYVRN 147
M Q+ N+ ++ ++ G + +G ++ + +F M I + M+ + R
Sbjct: 435 RMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRA 494
Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
REA+ + + + + + I +++ AC LE GK IL D D
Sbjct: 495 NLLREALEVIESMP------VASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDG 548
Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239
L + N+Y + + + +M+E + F
Sbjct: 549 AL-VLMSNIYAREQRWEDVRNIRRVMEEKNVF 579
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/471 (28%), Positives = 230/471 (48%), Gaps = 47/471 (9%)
Query: 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM-PRRNCFSWNAMIEG 81
VGK L G+ + ++ Y++ G+ +A LFD + R+N +W AM+ G
Sbjct: 59 VGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSG 118
Query: 82 FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMI 141
+++ + LF MP++N SWN +I G+A++G + A LF++MP RN ++WNSM+
Sbjct: 119 YLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMV 178
Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
V+ G EA+ LF+ + + D ++ A ++ +++ +
Sbjct: 179 KALVQRGRIDEAMNLFERMP-------RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 231
Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
+ + ++++ Y + + A+Q+ +M E D + +I+G+ +MN A +F
Sbjct: 232 NI----ISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLF 287
Query: 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFL 320
DR + + + W +MI+GY+ N E+ EAL +F KM R+G V + T S+LSACS L L
Sbjct: 288 DRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGL 347
Query: 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVY 380
G+Q+H K + IV SALL+ YSK G +L + K++D L+
Sbjct: 348 VEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG------ELIAARKMFDNGLV------- 394
Query: 381 SSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440
C R LISWNSMI + +G EA++++ M K + +
Sbjct: 395 --CQR--------------DLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYL 438
Query: 441 SVISACANISSLELGEQVF---ARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
+++ AC++ +E G + F R + L + T LVD + G +K
Sbjct: 439 NLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHY--TCLVDLCGRAGRLK 487
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/407 (23%), Positives = 186/407 (45%), Gaps = 61/407 (14%)
Query: 89 EKSLQLFNVM---------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNS 139
++S+QLFN++ P+ W LI K G++ AR LF+ +P R+ + W
Sbjct: 25 DRSVQLFNLVRSIYSSSSRPRVPQPEW--LIGELCKVGKIAEARKLFDGLPERDVVTWTH 82
Query: 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199
+I Y++ G REA LF ++S
Sbjct: 83 VITGYIKLGDMREARELFDRVDSRK----------------------------------- 107
Query: 200 VNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARR 259
+ V +++V+ Y + + A + M E + + +I GYA G+++ A
Sbjct: 108 ------NVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALE 161
Query: 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF 319
+FD + + V WNSM+ + EA+ LF +M R V+ + +++ + G
Sbjct: 162 LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVV----SWTAMVDGLAKNGK 217
Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
++ +++ + ++I +A++ Y++ +A +LF + D NTMIT
Sbjct: 218 VDEARRLFDCMPE----RNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITG 273
Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFS 438
+ + A +F MP K++ISW +MI G +N EAL++F M ++ + +
Sbjct: 274 FIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGT 333
Query: 439 LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
S++SAC++++ L G+Q+ ++ ++I++++L++ Y K G
Sbjct: 334 YVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSG 380
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/528 (25%), Positives = 228/528 (43%), Gaps = 105/528 (19%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ +L +C S+ +G+QLH LK G + T + N L+ +Y GN A +F M
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY-VCNALVSLYFHLGNLISAEHIFSNM 349
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKND------------------ 103
+R+ ++N +I G + G+ EK+++LF M P N
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409
Query: 104 ----------FSWNMLISG-----FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
F+ N I G +AK +++TA F + N + WN M+ Y
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
R + R+F+++ +E + + + +++ C L LE G+QIHS I+ ++
Sbjct: 470 DLRNSFRIFRQMQ---IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAY 526
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
+ S L+++Y K GK++ A + R
Sbjct: 527 VCSVLIDMYAKL-------------------------------GKLDTAWDILIRFAGKD 555
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
V W +MI+GY N D +AL F +M G+ D L + +SAC+ L L+ G+Q+H
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 615
Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
AC G D+ +AL+ YS+ CG+IE+
Sbjct: 616 QACVSGFSSDLPFQNALVTLYSR-------------------------------CGKIEE 644
Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
+ F I+WN+++ G Q+G+ EAL +F MN+ + + F+ S + A +
Sbjct: 645 SYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASE 704
Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
++++ G+QV A +T G DS+ + +L+ Y KCG I E ++
Sbjct: 705 TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 752
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 148/598 (24%), Positives = 250/598 (41%), Gaps = 148/598 (24%)
Query: 8 LARLLQSC-NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
L LL+ C T+ S+ G++LH LK G L+S ++ +L Y+ G+ A +FDE
Sbjct: 87 LKWLLEGCLKTNGSLDEGRKLHSQILKLG-LDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 145
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSW-------------- 106
MP R F+WN MI+ + LF NV P + FS
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDV 205
Query: 107 --------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
N LI +++ G + AR +F+ + ++ +W +MI +
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 265
Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
N EA+RLF ++ V + + ++V+ AC + +LE G+Q+H +L G D
Sbjct: 266 NECEAEAIRLFCDM---YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSD 322
Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
+ + ++LV+LY G+ SA + + M + D + LI+G + CG
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGY------------- 369
Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
+A+ LF +M +G+ D++TLAS++ ACS+ G L G+Q+
Sbjct: 370 ------------------GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQL 411
Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
H + K+G + + ALL+ Y+K A F E +V + +L N M+ Y +
Sbjct: 412 HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDL 471
Query: 387 EDAKHIFRTM------PN--------KSLISWNSMIVGLSQNGSPIEA------------ 420
++ IFR M PN K+ I + +G + I+
Sbjct: 472 RNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVL 531
Query: 421 LDLFCNMNKLD--------------------------------------------LRMDK 436
+D++ + KLD +R D+
Sbjct: 532 IDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDE 591
Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
L + +SACA + +L+ G+Q+ A+ + G SD +LV Y +CG K++E YL
Sbjct: 592 VGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG--KIEESYL 647
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 131/529 (24%), Positives = 216/529 (40%), Gaps = 106/529 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA L+ +C+ ++ G+QLH + K G ++ I LL +Y +C + AL F E
Sbjct: 392 LASLVVACSADGTLFRGQQLHAYTTKLGFASNN-KIEGALLNLYAKCADIETALDYFLET 450
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------------------- 99
N WN M+ + L S ++F M
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 510
Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
Q N + ++LI +AK G+L TA + ++ ++W +MI Y +
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 570
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
F +A+ F+++ L ++ D L + ACA L AL+ G+QIH+ V+G D
Sbjct: 571 FDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
++LV LY +CG + + D+ +AL+SG+ G
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG---------------- 671
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
NNE EAL +F +M R G+ + T S + A S ++ GKQVH
Sbjct: 672 -------------NNE--EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHA 716
Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
K G + V +AL+ Y+K G SDA K F E+ + +
Sbjct: 717 VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV----------------- 759
Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
SWN++I S++G EALD F M ++R + +L V+SAC++
Sbjct: 760 --------------SWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSH 805
Query: 449 ISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496
I ++ G F + + GL +VD + G + + ++ +
Sbjct: 806 IGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQE 854
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGFLEHGKQVHGHACK 332
+ IS YIS +E + + + G+ + TL +L C + G L+ G+++H K
Sbjct: 55 AAISVYISEDESFQEKRI-DSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK 113
Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
+G+ + ++ L D Y +G L+ KV+D
Sbjct: 114 LGLDSNGCLSEKLFDFYLFKG------DLYGAFKVFD----------------------- 144
Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-S 451
MP +++ +WN MI L+ E LF M ++ ++ + + V+ AC S +
Sbjct: 145 --EMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVA 202
Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
++ EQ+ AR+ GL ++ L+D Y + GF+ +
Sbjct: 203 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDL 240
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 17/221 (7%)
Query: 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
GKQ+H K G +S + N L+ MY +CG+ +DA F E+ +N SWNA+I +
Sbjct: 711 GKQVHAVITKTG-YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 84 KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA----GELKTARTLFNDMPRRNAIA--- 136
K G ++L F+ M N ++ + G A G + F M ++
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829
Query: 137 --WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
+ ++ R G A +E+ ++ DA + T++ AC +E G +
Sbjct: 830 EHYVCVVDMLTRAGLLSRAKEFIQEM------PIKPDALVWRTLLSACVVHKNMEIG-EF 882
Query: 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
+H L+ DS L NLY +++ + MKE
Sbjct: 883 AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKE 923
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 134/493 (27%), Positives = 229/493 (46%), Gaps = 73/493 (14%)
Query: 26 QLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
Q +FL+ ++ + N + + R GN +A +F +M R+ SW AMI + +
Sbjct: 35 QKTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAEN 94
Query: 86 GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG-ELKTARTLFNDMPRRNAIAWNSMIHCY 144
G K+ Q+F+ MP + S+N +I+ K +L A LF D+P +NA+++ +MI +
Sbjct: 95 GKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGF 154
Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
VR G EA L+ E +++ + S++L++G
Sbjct: 155 VRAGRFDEAEFLYAE--------------------------TPVKFRDSVASNVLLSG-- 186
Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
Y + G +N A +V M + S+++ GY G++ DAR +FDR
Sbjct: 187 ------------YLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRM 234
Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHG 323
T+ + + W +MI GY + LF +MR+ G V +++TLA + AC G
Sbjct: 235 TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREG 294
Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
Q+HG ++ + D+ + ++L+ YSK G +A +F +K D++ N++IT
Sbjct: 295 SQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQR 354
Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLS------------------------------- 412
+I +A +F MP K ++SW MI G S
Sbjct: 355 KQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFV 414
Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
NG EAL F M + ++ + ++ +SV+SA A+++ L G Q+ RV + + +D
Sbjct: 415 SNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLS 474
Query: 473 ISTSLVDFYCKCG 485
+ SLV YCKCG
Sbjct: 475 VQNSLVSMYCKCG 487
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/446 (26%), Positives = 209/446 (46%), Gaps = 66/446 (14%)
Query: 47 LLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
++ ++R G +A L+ E P R+ + N ++ G+++ G +++++F M K
Sbjct: 150 MITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVV 209
Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
S + ++ G+ K G + AR+LF+ M RN I W +MI Y + GF + LF + +
Sbjct: 210 SCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQE- 268
Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
++ ++ LA + AC D G QIH + L+FD LG+SL+++Y K G
Sbjct: 269 -GDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMG 327
Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT------------------- 265
A V +MK D ++LI+G ++++A +F++
Sbjct: 328 EAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGE 387
Query: 266 ------------DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
+ ++ W +MIS ++SN EAL FHKM + V ++ T +SVLSA
Sbjct: 388 ISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSA 447
Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
+SL L G Q+HG K+ +++D+ V ++L+ Y K G +DA K+FS + + +
Sbjct: 448 TASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSY 507
Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
NTMI+ G S NG +AL LF +
Sbjct: 508 NTMIS-------------------------------GYSYNGFGKKALKLFSMLESSGKE 536
Query: 434 MDKFSLASVISACANISSLELGEQVF 459
+ + +++SAC ++ ++LG + F
Sbjct: 537 PNGVTFLALLSACVHVGYVDLGWKYF 562
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 167/359 (46%), Gaps = 36/359 (10%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA + ++C G Q+H + + L L + N L+ MY + G +A +F M
Sbjct: 278 LAVMFKACRDFVRYREGSQIH-GLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVM 336
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
++ SWN++I G ++ ++ +LF MP K+ SW +I GF+ GE+ LF
Sbjct: 337 KNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFG 396
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
MP ++ I W +MI +V NG+ EA+ F ++ L + + +++ ++V+ A A LA
Sbjct: 397 MMPEKDNITWTAMISAFVSNGYYEEALCWFHKM---LQKEVCPNSYTFSSVLSATASLAD 453
Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
L G QIH ++ + D + +SLV++Y KCG+ N A ++ + + EP+ + +ISG
Sbjct: 454 LIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISG 513
Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
Y+ N +AL LF + +G + T
Sbjct: 514 YS-------------------------------YNGFGKKALKLFSMLESSGKEPNGVTF 542
Query: 308 ASVLSACSSLGFLEHG-KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365
++LSAC +G+++ G K + + ++D + G+ DA L S +
Sbjct: 543 LALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM 601
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 135/279 (48%), Gaps = 8/279 (2%)
Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
+S ++ + + G+ A + M A+IS YA GKM+ A +VFD +
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 271 MWNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
+N+MI+ I N D +A LF + ++A + A++++ G + + ++
Sbjct: 114 SYNAMITAMIKNKCDLGKAYELFCDIPE----KNAVSYATMITGFVRAGRFDEAEFLYAE 169
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
D + ++ LL Y + G ++A ++F + V + + ++M+ Y GRI DA
Sbjct: 170 TPVK--FRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDA 227
Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACAN 448
+ +F M +++I+W +MI G + G + LF M + D++++ +LA + AC +
Sbjct: 228 RSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRD 287
Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
G Q+ V+ + L+ D + SL+ Y K G++
Sbjct: 288 FVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM 326
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 138/517 (26%), Positives = 241/517 (46%), Gaps = 86/517 (16%)
Query: 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC--FSWNAMIEGF 82
K +H L GIL TL + + L+ Y+ G + A+ L P + + WN++I +
Sbjct: 45 KLIHQKLLSFGIL--TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSY 102
Query: 83 MKLGHKEKSLQLFNVMPQ---------------------------------------KND 103
G K L LF +M N
Sbjct: 103 GDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNV 162
Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
F N L++ +++ L AR +F++M + ++WNS+I Y + G + A+ +F + ++
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE 222
Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
R D L V+ CA L GKQ+H + + + + +G+ LV++Y KCG
Sbjct: 223 FGCRP--DNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM 280
Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGY 279
+ AN V + M D +A+++GY+ G+ DA R+F++ + V W++ ISGY
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340
Query: 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339
EAL + +M +G+ + TL SVLS C+S+G L HGK++H +A K +
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPI---- 396
Query: 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK 399
K G + +++N +I +Y+ C +++ A+ +F ++ K
Sbjct: 397 --------DLRKNGHGD------------ENMVINQLIDMYAKCKKVDTARAMFDSLSPK 436
Query: 400 S--LISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSLELG 455
+++W MI G SQ+G +AL+L M + D R + F+++ + ACA++++L +G
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496
Query: 456 EQVFARVTIIGLDSDQ-----IISTSLVDFYCKCGFI 487
+Q+ A L + Q +S L+D Y KCG I
Sbjct: 497 KQIHA----YALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 172/405 (42%), Gaps = 93/405 (22%)
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDM 129
+N F N +++ + K G +++ +F+ M K+ SWN +++G+++ G + A LF M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 130 P----RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
+ + + W++ I Y + G EA+ + +++ L ++ + L +V+ CA +
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM---LSSGIKPNEVTLISVLSGCASV 378
Query: 186 AALEYGKQIHSHILVNGLDF-------DSVLGSSLVNLYGKC------------------ 220
AL +GK+IH + + +D ++++ + L+++Y KC
Sbjct: 379 GALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKER 438
Query: 221 ---------------GDFNSANQVLNMMKE------PDDFCLSA---------------- 243
GD N A ++L+ M E P+ F +S
Sbjct: 439 DVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQ 498
Query: 244 --------------------LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
LI YA CG ++DAR VFD + V W S+++GY +
Sbjct: 499 IHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHG 558
Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVA 342
EAL +F +MRR G D TL VL ACS G ++ G + V GV
Sbjct: 559 YGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHY 618
Query: 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
+ L+D + G + A +L E+ + ++ + SC RI
Sbjct: 619 ACLVDLLGRAGRLNAALRLIEEMPMEPPPVV---WVAFLSCCRIH 660
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 107/253 (42%), Gaps = 36/253 (14%)
Query: 242 SALISGYANCGKMNDARRVFDR--TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299
S LIS Y + G ++ A + R +D WNS+I Y N + L LF M
Sbjct: 63 SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS 122
Query: 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC 359
D T V AC + + G+ H + G I +V V +AL
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNAL-------------- 168
Query: 360 KLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE 419
+ +YS C + DA+ +F M ++SWNS+I ++ G P
Sbjct: 169 -----------------VAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV 211
Query: 420 ALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
AL++F M N+ R D +L +V+ CA++ + LG+Q+ + + + LV
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271
Query: 479 DFYCKCGFIKMDE 491
D Y KCG MDE
Sbjct: 272 DMYAKCGM--MDE 282
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 107/234 (45%), Gaps = 18/234 (7%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C + ++ +GKQ+H + L+ L ++N L+ MY +CG+ +DA L+FD M +N
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWN-----MLISGFAKAGELKTARTLF 126
+W +++ G+ G+ E++L +F+ M ++ F + +++ + +G + F
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEM-RRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602
Query: 127 NDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181
N M ++ + ++ R G A+RL +E+ ++ + +
Sbjct: 603 NRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMP------MEPPPVVWVAFLSC 656
Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
C +E G+ I + D + L NLY G + ++ ++M+
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSY-TLLSNLYANAGRWKDVTRIRSLMRH 709
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 359 CKLFSELKVYDTILLN----------TMITVYSSCGRIEDAKHIFRTMP--NKSLISWNS 406
CK S++K+ LL+ +I+ Y S G + A + R P + + WNS
Sbjct: 38 CKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97
Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
+I NG + L LF M+ L D ++ V AC ISS+ GE A + G
Sbjct: 98 LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157
Query: 467 LDSDQIISTSLVDFYCKC 484
S+ + +LV Y +C
Sbjct: 158 FISNVFVGNALVAMYSRC 175
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/464 (26%), Positives = 219/464 (47%), Gaps = 79/464 (17%)
Query: 57 PTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKA 116
P DA LFDEMP RN SWN ++ G+MK G +++ ++F++MP++N SW L+ G+
Sbjct: 64 PRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHN 123
Query: 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL-NSDLVERLQCDAFIL 175
G++ A +LF MP +N ++W M+ ++++G +A +L++ + + D + R
Sbjct: 124 GKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIART------- 176
Query: 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG-SSLVNLYGKCGDFNSANQVLNMMK 234
+ + G C + G+ + + + + SV+ +++V YG+ + A ++ ++M
Sbjct: 177 SMIHGLCKE------GRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230
Query: 235 EPDDFCLSALISGYANCGKMNDA-------------------------------RRVFDR 263
E + ++++ GY G++ DA RRVFD
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290
Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
+ + W ++I + N + EAL LF M++ GV TL S+LS C+SL L HG
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Query: 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSC 383
KQVH + DV VAS L+ T+Y C
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLM-------------------------------TMYIKC 379
Query: 384 GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASV 442
G + +K IF P+K +I WNS+I G + +G EAL +FC M + ++ + +
Sbjct: 380 GELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVAT 439
Query: 443 ISACANISSLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCG 485
+SAC+ +E G +++ + ++ G+ +VD + G
Sbjct: 440 LSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAG 483
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/422 (24%), Positives = 181/422 (42%), Gaps = 105/422 (24%)
Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
N+ I+ ++ G++ AR LF+ ++ +WNSM+ Y N R+A +LF E+
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMP----- 75
Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
D + + + LV+ Y K G+ + A
Sbjct: 76 -------------------------------------DRNIISWNGLVSGYMKNGEIDEA 98
Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
+V ++M E + +AL+ GY + GK++ A +F + + + V W M+ G++
Sbjct: 99 RKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFL------ 152
Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD-------- 338
++G ++DA L ++ ++ +HG CK G +D+
Sbjct: 153 ----------QDGRIDDACKLYEMIPDKDNIA---RTSMIHG-LCKEGRVDEAREIFDEM 198
Query: 339 ----VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFR 394
VI + ++ Y + DA K+F + + +M+ Y GRIEDA+ +F
Sbjct: 199 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFE 258
Query: 395 TMPNKSLISWNSMIVGLSQ-------------------------------NGSPIEALDL 423
MP K +I+ N+MI GL Q NG +EALDL
Sbjct: 259 VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDL 318
Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
F M K +R +L S++S CA+++SL G+QV A++ D D +++ L+ Y K
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378
Query: 484 CG 485
CG
Sbjct: 379 CG 380
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L C + S+H GKQ+H ++ + + +A+ L+ MY++CG + L+FD
Sbjct: 334 LISILSVCASLASLHHGKQVHAQLVRCQ-FDVDVYVASVLMTMYIKCGELVKSKLIFDRF 392
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP-----QKNDFSWNMLISGFAKAGELKTA 122
P ++ WN++I G+ G E++L++F MP + N+ ++ +S + AG ++
Sbjct: 393 PSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEG 452
Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
++ M + + M+ R G EA+ + + ++ DA + +
Sbjct: 453 LKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT------VEPDAAVWGS 506
Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
++GAC + L+ + + L+ +S L N+Y G + ++ +MK
Sbjct: 507 LLGACRTHSQLDVA-EFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMK 562
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413
MP DA KLF E+ + I N +++ Y G I++A+ +F MP ++++SW +++ G
Sbjct: 63 MPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVH 122
Query: 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQII 473
NG A LF M + +K S ++ ++ +++ + D D I
Sbjct: 123 NGKVDVAESLFWKMPE----KNKVSWTVMLIGFLQDGRIDDACKLYEMIP----DKDNIA 174
Query: 474 STSLVDFYCKCGFIKMDE 491
TS++ CK G ++DE
Sbjct: 175 RTSMIHGLCKEG--RVDE 190
>sp|Q9LHN5|PP242_ARATH Putative pentatricopeptide repeat-containing protein At3g18840
OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1
Length = 678
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/476 (28%), Positives = 235/476 (49%), Gaps = 50/476 (10%)
Query: 28 HLHFLKKGILNSTLPI--ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85
H+ +K G STL +N+L+ +Y + G +A +FDEM RN +SWNA+I ++K
Sbjct: 11 HIRSIKSG---STLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKF 67
Query: 86 GHKEKSLQLFNVMPQKNDF-SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
+ +++ +LF + D ++N L+SGFAK
Sbjct: 68 NNVKEARELFESDNCERDLITYNTLLSGFAKT---------------------------- 99
Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
+G EA+ +F E++ + + D F + T++ A L + YG+Q+H ++ G D
Sbjct: 100 --DGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFYGEQLHGVLVKTGND 157
Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLN--MMKEPDDFCLSALISGYANCGKMNDARRVFD 262
SSL+++Y KCG F + N ++ D +A+I+ Y G ++ A VF
Sbjct: 158 GTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAYCREGDIDKALSVFW 217
Query: 263 RTTD-TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321
R + ++ WN++I+GY N + EAL + M NG+ D + +VL+ SSL L+
Sbjct: 218 RNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSLK 277
Query: 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELKVYDTILLNTMIT 378
GK+VH K G + V+S ++D Y K G A L+ +Y ++MI
Sbjct: 278 IGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSA---SSMIV 334
Query: 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG---LSQNGSPIEALDLFCNMNKLDLRMD 435
YSS G++ +AK +F ++ K+L+ W +M +G L Q S +E F N+ + D
Sbjct: 335 GYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFI-ANETNTP-D 392
Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
+ SV+ AC+ + +E G+++ G+ D+ + T+ VD Y KCG ++ E
Sbjct: 393 SLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAE 448
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 220/467 (47%), Gaps = 67/467 (14%)
Query: 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI 79
++ G+QLH +K G + +++ L+ MY +CG F E+ C +N
Sbjct: 140 NVFYGEQLHGVLVKTGNDGTKFAVSS-LIHMYSKCGK-------FKEV----CNIFNGSC 187
Query: 80 EGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRN-AIAWN 138
F+ + + N +I+ + + G++ A ++F P N I+WN
Sbjct: 188 VEFV------------------DSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWN 229
Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
++I Y +NG+ EA+++ + + L+ D V+ + L +L+ GK++H+ +
Sbjct: 230 TLIAGYAQNGYEEEALKMAVSMEEN---GLKWDEHSFGAVLNVLSSLKSLKIGKEVHARV 286
Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258
L NG + + S +V++Y KCG+ A + + + S++I GY++ GKM +A+
Sbjct: 287 LKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASSMIVGYSSQGKMVEAK 346
Query: 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSL 317
R+FD ++ + V+W +M GY++ + L L N D+ + SVL ACS
Sbjct: 347 RLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDSLVMVSVLGACSLQ 406
Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
++E GK++HGH+ + G++ D + +A +D YSK
Sbjct: 407 AYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSK-------------------------- 440
Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437
CG +E A+ IF + + + +N+MI G + +G ++ F +M + + D+
Sbjct: 441 -----CGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEI 495
Query: 438 SLASVISACANISSLELGEQVF-ARVTIIGLDSDQIISTSLVDFYCK 483
+ +++SAC + + GE+ F + + + + T ++D Y K
Sbjct: 496 TFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGK 542
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 24/240 (10%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ +L +C+ + GK++H H L+ GIL + + MY +CGN A +FD
Sbjct: 396 MVSVLGACSLQAYMEPGKEIHGHSLRTGILMDK-KLVTAFVDMYSKCGNVEYAERIFDSS 454
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
R+ +NAMI G GH+ KS Q F M + ++ ++ L+S G +
Sbjct: 455 FERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVLEGE 514
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
F M I+ + MI Y + +A+ L + + D VE+ DA IL
Sbjct: 515 KYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGI--DQVEK---DAVILGAF 569
Query: 179 IGACADLAALEYGKQIHSHILV----NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234
+ AC+ E K++ +LV NG + + N Y G ++ ++ + M+
Sbjct: 570 LNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQI-----ANAYASSGRWDEMQRIRHQMR 624
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 140/485 (28%), Positives = 220/485 (45%), Gaps = 106/485 (21%)
Query: 41 LPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM-- 98
+ + N L M++R GN DA +F +M RN FSWN ++ G+ K G+ ++++ L++ M
Sbjct: 129 VELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLW 188
Query: 99 -----PQKNDFSW---------------------------------NMLISGFAKAGELK 120
P F N LI+ + K G++K
Sbjct: 189 VGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVK 248
Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
+AR LF+ MPRR+ I+WN+MI Y NG E + LF + V+ D L +VI
Sbjct: 249 SARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDP---DLMTLTSVIS 305
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
AC L G+ IH++++ G D + +SL +Y G + A ++ + M+ D
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKD--- 362
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
V W +MISGY N +A+ + M ++ V
Sbjct: 363 ----------------------------IVSWTTMISGYEYNFLPDKAIDTYRMMDQDSV 394
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
D T+A+VLSAC++LG L+ G ++H A K +I VIVA
Sbjct: 395 KPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVA------------------ 436
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
N +I +YS C I+ A IF +P K++ISW S+I GL N EA
Sbjct: 437 -------------NNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEA 483
Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
L +F K+ L+ + +L + ++ACA I +L G+++ A V G+ D + +L+D
Sbjct: 484 L-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDM 542
Query: 481 YCKCG 485
Y +CG
Sbjct: 543 YVRCG 547
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/514 (25%), Positives = 222/514 (43%), Gaps = 107/514 (20%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L++C + GK++H+H ++ G + + N L+ MY++CG+ A LLFD MPRR
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYG-YELDIDVVNALITMYVKCGDVKSARLLFDRMPRR 260
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQ-------------------KNDFS 105
+ SWNAMI G+ + G + L+LF M P D
Sbjct: 261 DIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIH 320
Query: 106 WNMLISGFA--------------KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
++ +GFA AG + A LF+ M R++ ++W +MI Y N
Sbjct: 321 AYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPD 380
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
+A+ ++ ++ D V + D +A V+ ACA L L+ G ++H + L ++ +
Sbjct: 381 KAIDTYRMMDQDSV---KPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVAN 437
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
+L+N+Y KC C ++ A +F + +
Sbjct: 438 NLINMYSKC-----------------------------KC--IDKALDIFHNIPRKNVIS 466
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
W S+I+G NN EAL+ +M+ + +A TL + L+AC+ +G L GK++H H
Sbjct: 467 WTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVL 525
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
+ GV D + +ALLD Y + CGR+ A
Sbjct: 526 RTGVGLDDFLPNALLDMYVR-------------------------------CGRMNTAWS 554
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
F + K + SWN ++ G S+ G ++LF M K +R D+ + S++ C+
Sbjct: 555 QFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQM 613
Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
+ G F+++ G+ + +VD + G
Sbjct: 614 VRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAG 647
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 168/381 (44%), Gaps = 64/381 (16%)
Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
N ++ F + G L A +F M RN +WN ++ Y + G+ EA+ L+ + V
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML--WVG 190
Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
++ D + V+ C + L GK++H H++ G + D
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDI------------------- 231
Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
V+N ALI+ Y CG + AR +FDR + WN+MISGY N
Sbjct: 232 -DVVN-----------ALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCH 279
Query: 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346
E L LF MR V D TL SV+SAC LG G+ +H + G D+ V ++L
Sbjct: 280 EGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLT 339
Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
Y G +A KLFS ++ K ++SW +
Sbjct: 340 QMYLNAGSWREAEKLFSRME-------------------------------RKDIVSWTT 368
Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
MI G N P +A+D + M++ ++ D+ ++A+V+SACA + L+ G ++
Sbjct: 369 MISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR 428
Query: 467 LDSDQIISTSLVDFYCKCGFI 487
L S I++ +L++ Y KC I
Sbjct: 429 LISYVIVANNLINMYSKCKCI 449
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/447 (23%), Positives = 191/447 (42%), Gaps = 55/447 (12%)
Query: 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDA 60
+D + L ++ +C +G+ +H + + G + + N L QMY+ G+ +A
Sbjct: 293 VDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG-FAVDISVCNSLTQMYLNAGSWREA 351
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKA 116
LF M R++ SW MI G+ +K++ + +M Q ++ + ++S A
Sbjct: 352 EKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATL 411
Query: 117 GELKT-----------------------------------ARTLFNDMPRRNAIAWNSMI 141
G+L T A +F+++PR+N I+W S+I
Sbjct: 412 GDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSII 471
Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
N EA+ +++ L Q +A L + ACA + AL GK+IH+H+L
Sbjct: 472 AGLRLNNRCFEALIFLRQMKMTL----QPNAITLTAALAACARIGALMCGKEIHAHVLRT 527
Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
G+ D L ++L+++Y +CG N+A N K+ D + L++GY+ G+ + +F
Sbjct: 528 GVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKK-DVTSWNILLTGYSERGQGSMVVELF 586
Query: 262 DRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
DR + + + S++ G + + L+ F KM GV + A V+
Sbjct: 587 DRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRA 646
Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDT---YSKRGMPSDACKLFSELKVYDTILLN 374
G L+ + H K+ V D V ALL+ + K + + + EL
Sbjct: 647 GELQ---EAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYI 703
Query: 375 TMITVYSSCGRIEDAKHIFRTMPNKSL 401
+ +Y+ CG+ + + R M L
Sbjct: 704 LLCNLYADCGKWREVAKVRRMMKENGL 730
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFS----ELKVYDTILLNTMITVYSSCGRIE 387
+V V +DV VA L + + + K++S + L N + ++ G +
Sbjct: 89 RVAVDEDVFVALVRLCEWKR--AQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLV 146
Query: 388 DAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFSLASVISAC 446
DA ++F M ++L SWN ++ G ++ G EA+ L+ M + ++ D ++ V+ C
Sbjct: 147 DAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTC 206
Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
I L G++V V G + D + +L+ Y KCG +K
Sbjct: 207 GGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVK 248
>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770
OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
Length = 774
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 218/462 (47%), Gaps = 75/462 (16%)
Query: 13 QSCNTHHSIH---VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69
+ C++ I+ +GKQ+H L+ G L + N LL++Y + + A L+F EMP
Sbjct: 254 EGCDSLSEIYGNELGKQIHCLALRLG-FGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPE 312
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTL 125
N SWN MI GF + +KS++ M Q N+ + ++ ++G+++T R +
Sbjct: 313 VNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRI 372
Query: 126 FNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL 185
F+ +P+ + AWN+M+ Y EA+ F+++ + L+ D L+ ++ +CA L
Sbjct: 373 FSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQ---FQNLKPDKTTLSVILSSCARL 429
Query: 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245
LE GKQIH ++ + +S + +S LI
Sbjct: 430 RFLEGGKQIHGVVIRTEISKNSHI-------------------------------VSGLI 458
Query: 246 SGYANCGKMNDARRVFDRTTDTSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVL-ED 303
+ Y+ C KM + +FD + + WNSMISG+ N DT+AL+LF +M + VL +
Sbjct: 459 AVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPN 518
Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
++ A+VLS+CS L L HG+Q HG K G + D V +AL D Y K
Sbjct: 519 ETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCK------------ 566
Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
CG I+ A+ F + K+ + WN MI G NG EA+ L
Sbjct: 567 -------------------CGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGL 607
Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
+ M + D + SV++AC++ +E G ++ + + I
Sbjct: 608 YRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRI 649
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/535 (25%), Positives = 238/535 (44%), Gaps = 121/535 (22%)
Query: 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
YLA LL+ GK +H ++ G+ + T + NRLL +Y+ CG+ A +FDE
Sbjct: 8 YLASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTY-LCNRLLDLYIECGDGDYARKVFDE 66
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126
M ++ +SWN ++ K G+L A +F
Sbjct: 67 -------------------------------MSVRDVYSWNAFLTFRCKVGDLGEACEVF 95
Query: 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI-----LATVIGA 181
+ MP R+ ++WN+MI VR GF +A+ ++K R+ CD F+ LA+V+ A
Sbjct: 96 DGMPERDVVSWNNMISVLVRKGFEEKALVVYK--------RMVCDGFLPSRFTLASVLSA 147
Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF-NSANQVLNMMKEPDDFC 240
C+ + +G + H + GLD + +G++L+++Y KCG + +V + +P++
Sbjct: 148 CSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVS 207
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
+A+I G A N+ EA+ +F M GV
Sbjct: 208 YTAVIGGLAR-------------------------------ENKVLEAVQMFRLMCEKGV 236
Query: 301 LEDASTLASVLS------ACSSLGFL---EHGKQVHGHACKVGVIDDVIVASALLDTYSK 351
D+ L+++LS C SL + E GKQ+H A ++G D+ + ++LL+ Y+K
Sbjct: 237 QVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAK 296
Query: 352 RGMPSDACKLFSELKVYDTILLNTM--------------------------------ITV 379
+ A +F+E+ + + N M I+V
Sbjct: 297 NKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISV 356
Query: 380 YSSC---GRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
+C G +E + IF ++P S+ +WN+M+ G S EA+ F M +L+ DK
Sbjct: 357 LGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDK 416
Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
+L+ ++S+CA + LE G+Q+ V + + I + L+ Y +C +++ E
Sbjct: 417 TTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISE 471
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 151/350 (43%), Gaps = 74/350 (21%)
Query: 53 RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE------KSLQLFNVMPQKNDFSW 106
R G+ +F +P+ + +WNAM+ G+ H E + +Q N+ P K S
Sbjct: 362 RSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSV 421
Query: 107 NM---------------------------------LISGFAKAGELKTARTLFNDMPRRN 133
+ LI+ +++ +++ + +F+D
Sbjct: 422 ILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINEL 481
Query: 134 AIA-WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192
IA WNSMI + N +A+ LF+ ++ V L + ATV+ +C+ L +L +G+
Sbjct: 482 DIACWNSMISGFRHNMLDTKALILFRRMHQTAV--LCPNETSFATVLSSCSRLCSLLHGR 539
Query: 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG 252
Q H ++ +G DS + ++L ++Y K CG
Sbjct: 540 QFHGLVVKSGYVSDSFVETALTDMYCK-------------------------------CG 568
Query: 253 KMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312
+++ AR+ FD ++V+WN MI GY N EA+ L+ KM +G D T SVL+
Sbjct: 569 EIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLT 628
Query: 313 ACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKL 361
ACS G +E G ++ ++ G+ ++ ++D + G DA KL
Sbjct: 629 ACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 678
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A +L SC+ S+ G+Q H +K G ++ + + L MY +CG A FD +
Sbjct: 522 FATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSF-VETALTDMYCKCGEIDSARQFFDAV 580
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
R+N WN MI G+ G ++++ L+ M + + ++ +++ + +G ++T
Sbjct: 581 LRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGL 640
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRL 156
+ + M R + I + ++ C R G +A +L
Sbjct: 641 EILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKL 678
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/508 (24%), Positives = 239/508 (47%), Gaps = 79/508 (15%)
Query: 25 KQLHLHFLKKGILNSTLPIANRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82
KQ H H ++ G + A++L M + A +FDE+P+ N F+WN +I +
Sbjct: 47 KQTHGHMIRTGTFSDPYS-ASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAY 105
Query: 83 MKLGHKEKSLQLF-------NVMPQKNDFSW----------------------------- 106
S+ F P K F +
Sbjct: 106 ASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSD 165
Query: 107 ----NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162
N LI + G+L +A +F + ++ ++WNSMI+ +V+ G +A+ LFK++ S
Sbjct: 166 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 225
Query: 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222
E ++ + V+ ACA + LE+G+Q+ S+I N ++ + L ++++++Y KCG
Sbjct: 226 ---EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282
Query: 223 FNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISN 282
A ++ + M+E D+ + ++ GYA AR V + V WN++IS Y N
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342
Query: 283 NEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
+ EAL++FH+++ ++ + TL S LSAC+ +G LE G+ +H + K G+ + V
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHV 402
Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
SAL+ YSK CG +E ++ +F ++ + +
Sbjct: 403 TSALIHMYSK-------------------------------CGDLEKSREVFNSVEKRDV 431
Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
W++MI GL+ +G EA+D+F M + +++ + + +V AC++ ++ E +F +
Sbjct: 432 FVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQ 491
Query: 462 V-TIIGLDSDQIISTSLVDFYCKCGFIK 488
+ + G+ ++ +VD + G+++
Sbjct: 492 MESNYGIVPEEKHYACIVDVLGRSGYLE 519
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 162/360 (45%), Gaps = 70/360 (19%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L +C ++ G+Q+ ++++ +N L +AN +L MY +CG+ DA LFD M +
Sbjct: 238 VLSACAKIRNLEFGRQV-CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 296
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
+ +W M++G+ E + ++ N MPQK+ +WN LIS
Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISA------------------ 338
Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
Y +NG EA+ +F EL L + ++ + L + + ACA + ALE
Sbjct: 339 -------------YEQNGKPNEALIVFHEL--QLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA- 249
G+ IHS+I +G+ + + S+L+++Y KCGD + +V N +++ D F SA+I G A
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443
Query: 250 -NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
CG EA+ +F+KM+ V + T
Sbjct: 444 HGCG---------------------------------NEAVDMFYKMQEANVKPNGVTFT 470
Query: 309 SVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
+V ACS G ++ + + H G++ + + ++D + G A K + +
Sbjct: 471 NVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPI 530
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 64/313 (20%)
Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
++I C L L KQ H H++ G D S L
Sbjct: 35 SLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKL----------------------- 68
Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM- 295
F ++AL S +A+ + AR+VFD +S WN++I Y S + ++ F M
Sbjct: 69 --FAMAAL-SSFAS---LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMV 122
Query: 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355
+ + T ++ A + + L G+ +HG A K V DV VA
Sbjct: 123 SESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVA------------- 169
Query: 356 SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNG 415
N++I Y SCG ++ A +F T+ K ++SWNSMI G Q G
Sbjct: 170 ------------------NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKG 211
Query: 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIST 475
SP +AL+LF M D++ ++ V+SACA I +LE G QV + + ++ + ++
Sbjct: 212 SPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLAN 271
Query: 476 SLVDFYCKCGFIK 488
+++D Y KCG I+
Sbjct: 272 AMLDMYTKCGSIE 284
>sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720
OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1
Length = 894
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/482 (26%), Positives = 239/482 (49%), Gaps = 36/482 (7%)
Query: 6 DYL-ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
D+L ++LQ C + GK +H +K G ++S L ++N +L +Y +CG A F
Sbjct: 181 DFLFPKILQGCANCGDVEAGKVIHSVVIKLG-MSSCLRVSNSILAVYAKCGELDFATKFF 239
Query: 65 DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND----FSWNMLISGFAKAGELK 120
M R+ +WN+++ + + G E++++L M ++ +WN+LI G+ + G+
Sbjct: 240 RRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCD 299
Query: 121 TARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176
A L M + W +MI + NG +A+ +F+++ + + +A +
Sbjct: 300 AAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKM---FLAGVVPNAVTIM 356
Query: 177 TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236
+ + AC+ L + G ++HS + G D ++G+SLV++Y KCG A +V + +K
Sbjct: 357 SAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNK 416
Query: 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLF 292
D + +++I+GY G A +F R D + + WN+MISGYI N ++ EA+ LF
Sbjct: 417 DVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLF 476
Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG------------HACKVGVIDDVI 340
+M ++G ++ + +++ A G++++GK+ V ++ +
Sbjct: 477 QRMEKDGKVQRNTATWNLIIA----GYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLP 532
Query: 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS 400
+ LL R + C L L + N + Y+ G IE ++ IF M K
Sbjct: 533 ACANLLGAKMVREI--HGCVLRRNLDAIHAVK-NALTDTYAKSGDIEYSRTIFLGMETKD 589
Query: 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460
+I+WNS+I G +GS AL LF M + ++ +L+S+I A + +++ G++VF
Sbjct: 590 IITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFY 649
Query: 461 RV 462
+
Sbjct: 650 SI 651
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 216/475 (45%), Gaps = 86/475 (18%)
Query: 95 FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAV 154
F + + + F L+S +AK G + AR +F+ M RN W++MI Y R RE
Sbjct: 107 FGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVA 166
Query: 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214
+LF+ + D V D F+ ++ CA+ +E GK IHS ++ G+ + +S++
Sbjct: 167 KLFRLMMKDGV---LPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSIL 223
Query: 215 NLYGKCGDFNSANQVLNMMKEPD---------DFCLSA---------------------- 243
+Y KCG+ + A + M+E D +C +
Sbjct: 224 AVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLV 283
Query: 244 ----LISGYANCGKMNDAR------RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
LI GY GK + A F T D + W +MISG I N +AL +F
Sbjct: 284 TWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFT--WTAMISGLIHNGMRYQALDMFR 341
Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
KM GV+ +A T+ S +SACS L + G +VH A K+G IDDV+V ++L+D YSK G
Sbjct: 342 KMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCG 401
Query: 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIV 409
DA K+F +K D N+MIT Y G A +F M + +L I+WN+MI
Sbjct: 402 KLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMIS 461
Query: 410 GLSQNGSPIEALDLFCNMNK---------------------------LDL-RMDKFS--- 438
G +NG EA+DLF M K L+L R +FS
Sbjct: 462 GYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFM 521
Query: 439 -----LASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
+ S++ ACAN+ ++ ++ V LD+ + +L D Y K G I+
Sbjct: 522 PNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIE 576
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 186/391 (47%), Gaps = 46/391 (11%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
+ +C+ I+ G ++H +K G ++ L + N L+ MY +CG DA +FD + ++
Sbjct: 359 VSACSCLKVINQGSEVHSIAVKMGFIDDVL-VGNSLVDMYSKCGKLEDARKVFDSVKNKD 417
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISGFAKAGELKTARTLFN 127
++WN+MI G+ + G+ K+ +LF M + N +WN +ISG+ K G+ A LF
Sbjct: 418 VYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQ 477
Query: 128 DMPR-----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182
M + RN WN +I Y++NG EA+ LF+++ R ++ + +++ AC
Sbjct: 478 RMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQ---FSRFMPNSVTILSLLPAC 534
Query: 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242
A+L + ++IH +L LD + ++L + Y K GD +
Sbjct: 535 ANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYS---------------- 578
Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
R +F + WNS+I GY+ + AL LF++M+ G+
Sbjct: 579 ---------------RTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITP 623
Query: 303 DASTLASVLSACSSLGFLEHGKQV-HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361
+ TL+S++ A +G ++ GK+V + A +I + SA++ Y + +A +
Sbjct: 624 NRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQF 683
Query: 362 FSELKVY-DTILLNTMITVYSSCGRIEDAKH 391
E+ + +T + + +T G I+ A H
Sbjct: 684 IQEMNIQSETPIWESFLTGCRIHGDIDMAIH 714
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470
L +NGS +EA ++ + ++ + + ++ +C + S+ LG + AR + + D
Sbjct: 56 LCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGLF-TEPD 114
Query: 471 QIISTSLVDFYCKCGFI 487
+ T L+ Y KCG I
Sbjct: 115 VFVETKLLSMYAKCGCI 131
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 192/395 (48%), Gaps = 69/395 (17%)
Query: 94 LFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
LF V +++ + LI +AK G++ AR LF+++ R+ ++WNSMI Y G+A++A
Sbjct: 158 LFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDA 217
Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
+ LF+++ E + D L +++GAC+ L L G+ + + + + LGS L
Sbjct: 218 MDLFRKMEE---EGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKL 274
Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
+++YGK CG ++ ARRVF++ V W
Sbjct: 275 ISMYGK-------------------------------CGDLDSARRVFNQMIKKDRVAWT 303
Query: 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333
+MI+ Y N + +EA LF +M + GV DA TL++VLSAC S+G LE GKQ+ HA ++
Sbjct: 304 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASEL 363
Query: 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIF 393
+ ++ VA+ L+D Y K CGR+E+A +F
Sbjct: 364 SLQHNIYVATGLVDMYGK-------------------------------CGRVEEALRVF 392
Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
MP K+ +WN+MI + G EAL LF +++ + + V+SAC + +
Sbjct: 393 EAMPVKNEATWNAMITAYAHQGHAKEALLLF---DRMSVPPSDITFIGVLSACVHAGLVH 449
Query: 454 LGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFI 487
G + F + ++ GL T+++D + G +
Sbjct: 450 QGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGML 484
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 171/385 (44%), Gaps = 70/385 (18%)
Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA-VRLFKELNSDLV 165
N LI + G+ + LF+ N ++N MI EA + L++ +
Sbjct: 69 NFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMK---F 125
Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
L+ D F V ACA L + G+ +HS + GL+ D + SL+ +Y K
Sbjct: 126 SGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAK------ 179
Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
CG++ AR++FD T+ +V WNSMISGY
Sbjct: 180 -------------------------CGQVGYARKLFDEITERDTVSWNSMISGYSEAGYA 214
Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC--KVGVIDDVIVAS 343
+A+ LF KM G D TL S+L ACS LG L G+ + A K+G+
Sbjct: 215 KDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGL-------- 266
Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
T L + +I++Y CG ++ A+ +F M K ++
Sbjct: 267 -------------------------STFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA 301
Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
W +MI SQNG EA LF M K + D +L++V+SAC ++ +LELG+Q+ +
Sbjct: 302 WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHAS 361
Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
+ L + ++T LVD Y KCG ++
Sbjct: 362 ELSLQHNIYVATGLVDMYGKCGRVE 386
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 57/293 (19%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L +C+ + G+ L + K I ST + ++L+ MY +CG+ A +F++M
Sbjct: 236 LVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTF-LGSKLISMYGKCGDLDSARRVFNQM 294
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMP---------------------- 99
+++ +W AMI + + G ++ +LF V P
Sbjct: 295 IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGK 354
Query: 100 -----------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
Q N + L+ + K G ++ A +F MP +N WN+MI Y G
Sbjct: 355 QIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQG 414
Query: 149 FAREAVRLFKELN---SDLVERLQCDAFILATVIGACADLAALEYG-KQIHSHILVNGLD 204
A+EA+ LF ++ SD+ FI V+ AC + G + H + GL
Sbjct: 415 HAKEALLLFDRMSVPPSDIT-------FI--GVLSACVHAGLVHQGCRYFHEMSSMFGLV 465
Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMND 256
+++++L + G + A + + +PD+ L+A++ C K D
Sbjct: 466 PKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGA---CHKRKD 515
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 197/415 (47%), Gaps = 42/415 (10%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N L+ Y++ +A +F+ MP RN SW AM++G+M+ G ++ LF MP++N+
Sbjct: 83 NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142
Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
SW ++ G G + AR L++ MP ++ +A +MI R G EA +F E+
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR--- 199
Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
ER + T+I ++ +++ + + V +S++ Y G
Sbjct: 200 -ER---NVVTWTTMITGYRQNNRVDVARKLFEVMP----EKTEVSWTSMLLGYTLSGRIE 251
Query: 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE 284
A + +M +A+I G+ G+++ ARRVFD D + W MI Y
Sbjct: 252 DAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGF 311
Query: 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344
+ EAL LF +M++ GV +L S+LS C++L L++G+QVH H + DDV VAS
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASV 371
Query: 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404
L+ T+Y CG + AK +F +K +I W
Sbjct: 372 LM-------------------------------TMYVKCGELVKAKLVFDRFSSKDIIMW 400
Query: 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
NS+I G + +G EAL +F M +K +L ++++AC+ LE G ++F
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIF 455
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 126/468 (26%), Positives = 210/468 (44%), Gaps = 74/468 (15%)
Query: 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
K+L L L++ L ST + + R G +A FD + + SWN+++ G+
Sbjct: 2 KRLKL-ILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFS 60
Query: 85 LGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
G +++ QLF+ M ++N SWN L+SG+ K + AR +F MP RN ++W +M+ Y
Sbjct: 61 NGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGY 120
Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG-- 202
++ G EA LF + ER + ++ G D ++ ++++ + V
Sbjct: 121 MQEGMVGEAESLFWRMP----ERNEVSWTVM---FGGLIDDGRIDKARKLYDMMPVKDVV 173
Query: 203 -------------------LDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPD 237
L FD V ++++ Y + + A ++ +M E
Sbjct: 174 ASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT 233
Query: 238 DFCLSALISGYANCGKMND-------------------------------ARRVFDRTTD 266
+ ++++ GY G++ D ARRVFD D
Sbjct: 234 EVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMED 293
Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
+ W MI Y + EAL LF +M++ GV +L S+LS C++L L++G+QV
Sbjct: 294 RDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQV 353
Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
H H + DDV VAS L+ Y K G A +F D I+ N++I+ Y+S G
Sbjct: 354 HAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLG 413
Query: 387 EDAKHIFR------TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
E+A IF TMPNK ++ +++ S G E L++F +M
Sbjct: 414 EEALKIFHEMPSSGTMPNK--VTLIAILTACSYAGKLEEGLEIFESME 459
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 18/226 (7%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L C T S+ G+Q+H H ++ + + +A+ L+ MY++CG A L+FD
Sbjct: 334 LISILSVCATLASLQYGRQVHAHLVRCQ-FDDDVYVASVLMTMYVKCGELVKAKLVFDRF 392
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
++ WN++I G+ G E++L++F+ MP N + +++ + AG+L+
Sbjct: 393 SSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGL 452
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
+F M + + ++ + R G +A+ L + + ++ DA + +
Sbjct: 453 EIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMT------IKPDATVWGAL 506
Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDS--VLGSSLVNLYGKCGD 222
+GAC + L+ + + N D VL SS+ K GD
Sbjct: 507 LGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGD 552
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432
I+ S G+I +A+ F ++ K++ SWNS++ G NG P EA LF M++ ++
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV 79
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/455 (27%), Positives = 214/455 (47%), Gaps = 99/455 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L+SC + G+Q+H H LK G + L + L+ MY++ G DA +FD+
Sbjct: 140 VLKSCAKSKAFKEGQQIHGHVLKLGC-DLDLYVHTSLISMYVQNGRLEDAHKVFDKS--- 195
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
P ++ S+ LI G+A G ++ A+ LF+++P
Sbjct: 196 ----------------------------PHRDVVSYTALIKGYASRGYIENAQKLFDEIP 227
Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
++ ++WN+MI Y G +EA+ LFK++ + ++ D + TV+ ACA ++E
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDM---MKTNVRPDESTMVTVVSACAQSGSIEL 284
Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
G+Q+H I +G F S +++N ALI Y+
Sbjct: 285 GRQVHLWIDDHG--------------------FGSNLKIVN-----------ALIDLYSK 313
Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
CG++ A +F+R + WN++I GY N EALLLF +M R+G + T+ S+
Sbjct: 314 CGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373
Query: 311 LSACSSLGFLEHGKQVHGHACK--VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368
L AC+ LG ++ G+ +H + K GV + + ++L+D Y+K
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK----------------- 416
Query: 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMN 428
CG IE A +F ++ +KSL SWN+MI G + +G + DLF M
Sbjct: 417 --------------CGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMR 462
Query: 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
K+ ++ D + ++SAC++ L+LG +F +T
Sbjct: 463 KIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMT 497
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 182/372 (48%), Gaps = 36/372 (9%)
Query: 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
L A ++F + N + WN+M + + A++L+ + S L +++ V
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMIS---LGLLPNSYTFPFV 140
Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238
+ +CA A + G+QIH H+L G D D + +SL+++Y + G A++V + D
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200
Query: 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298
+ALI GYA+ G + +A+++FD V WN+MISGY EAL LF M +
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260
Query: 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358
V D ST+ +V+SAC+ G +E G+QVH G ++ + +AL+D YSK G A
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320
Query: 359 CKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
C LF L D I NT+I Y+ ++A +F+ M L +P
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM--------------LRSGETP- 365
Query: 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE--QVFARVTIIGLDSDQIISTS 476
+ ++ S++ ACA++ ++++G V+ + G+ + + TS
Sbjct: 366 ----------------NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS 409
Query: 477 LVDFYCKCGFIK 488
L+D Y KCG I+
Sbjct: 410 LIDMYAKCGDIE 421
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 45/228 (19%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ ++ +C SI +G+Q+HL G S L I N L+ +Y +CG A LF+ +
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHG-FGSNLKIVNALIDLYSKCGELETACGLFERL 327
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFS------------------ 105
P ++ SWN +I G+ + +++L LF M ND +
Sbjct: 328 PYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 387
Query: 106 W-------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
W LI +AK G+++ A +FN + ++ +WN+MI +
Sbjct: 388 WIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAM 447
Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194
+G A + LF + +Q D ++ AC+ L+ G+ I
Sbjct: 448 HGRADASFDLFSRMRKI---GIQPDDITFVGLLSACSHSGMLDLGRHI 492
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 191/382 (50%), Gaps = 6/382 (1%)
Query: 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169
I+ AK+G + +AR +F+ MP + +AWN+M+ Y R G +EA+ LF +L +
Sbjct: 11 IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLR---FSDAK 67
Query: 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQV 229
D + ++ CA L +++G++I S ++ +G + +SL+++YGKC D SAN+V
Sbjct: 68 PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127
Query: 230 LNMM--KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
M ++ +L+ Y N + A VF + WN MISG+ +
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187
Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSS-LGFLEHGKQVHGHACKVGVIDDVIVASALL 346
L LF +M + D T +S+++ACS+ + +G+ VH K G V +++L
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVL 247
Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
Y+K G DA + ++V + N++I G E A +F P K++++W +
Sbjct: 248 SFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTT 307
Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
MI G +NG +AL F M K + D F+ +V+ AC+ ++ L G+ + + G
Sbjct: 308 MITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCG 367
Query: 467 LDSDQIISTSLVDFYCKCGFIK 488
+ +LV+ Y KCG IK
Sbjct: 368 FQGYAYVGNALVNLYAKCGDIK 389
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/487 (24%), Positives = 216/487 (44%), Gaps = 71/487 (14%)
Query: 6 DY-LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLF 64
DY +L +C + ++ G+++ ++ G S LP+ N L+ MY +C + A +F
Sbjct: 70 DYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCAS-LPVNNSLIDMYGKCSDTLSANKVF 128
Query: 65 DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTART 124
+M +N+ +W L+ + A + + A
Sbjct: 129 RDM-----------------------------CCDSRNEVTWCSLLFAYMNAEQFEAALD 159
Query: 125 LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC-A 183
+F +MP+R A AWN MI + G + LFKE+ L + D + ++++ AC A
Sbjct: 160 VFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEM---LESEFKPDCYTFSSLMNACSA 216
Query: 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
D + + YG+ +H+ +L NG +S+++ Y K G + A + L ++ ++
Sbjct: 217 DSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNS 276
Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
+I G+ A VF + + V W +MI+GY N + +AL F +M ++GV D
Sbjct: 277 IIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSD 336
Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
+VL ACS L L HGK +HG G V +AL++ Y+K
Sbjct: 337 HFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAK------------ 384
Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
CG I++A F + NK L+SWN+M+ +G +AL L
Sbjct: 385 -------------------CGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKL 425
Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI---IGLDSDQIISTSLVDF 480
+ NM ++ D + +++ C++ +E G +F + I L+ D + T ++D
Sbjct: 426 YDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHV--TCMIDM 483
Query: 481 YCKCGFI 487
+ + G +
Sbjct: 484 FGRGGHL 490
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 126/248 (50%), Gaps = 3/248 (1%)
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
L++ I+ A G++ AR+VFD + +V WN+M++ Y EA+ LF ++R +
Sbjct: 7 LTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDA 66
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
D + ++LS C+SLG ++ G+++ + G + V ++L+D Y K A K
Sbjct: 67 KPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANK 126
Query: 361 LFSEL--KVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418
+F ++ + + +++ Y + + E A +F MP + +WN MI G + G
Sbjct: 127 VFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLE 186
Query: 419 EALDLFCNMNKLDLRMDKFSLASVISAC-ANISSLELGEQVFARVTIIGLDSDQIISTSL 477
L LF M + + + D ++ +S+++AC A+ S++ G V A + G S S+
Sbjct: 187 SCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSV 246
Query: 478 VDFYCKCG 485
+ FY K G
Sbjct: 247 LSFYTKLG 254
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%)
Query: 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430
+ L + I + GRI A+ +F MP ++WN+M+ S+ G EA+ LF +
Sbjct: 5 VRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFS 64
Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
D + D +S +++S CA++ +++ G ++ + V G + ++ SL+D Y KC
Sbjct: 65 DAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKC 118
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 200/400 (50%), Gaps = 11/400 (2%)
Query: 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKE 159
Q + + LI+ ++ A + +P +++S+I+ + +++ +F
Sbjct: 47 QNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSR 106
Query: 160 LNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219
+ S L D+ +L + CA+L+A + GKQIH V+GLD D+ + S+ ++Y +
Sbjct: 107 MFS---HGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMR 163
Query: 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMWNSM 275
CG A +V + M + D SAL+ YA G + + R+ + + V WN +
Sbjct: 164 CGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGI 223
Query: 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV 335
+SG+ + EA+++F K+ G D T++SVL + L G+ +HG+ K G+
Sbjct: 224 LSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGL 283
Query: 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRT 395
+ D V SA++D Y K G LF++ ++ + + N IT S G ++ A +F
Sbjct: 284 LKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFEL 343
Query: 396 MPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
+++ +SW S+I G +QNG IEAL+LF M ++ + ++ S++ AC NI++
Sbjct: 344 FKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAA 403
Query: 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
L G + L + + ++L+D Y KCG I + +
Sbjct: 404 LGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQ 443
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 218/456 (47%), Gaps = 66/456 (14%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L L + C + VGKQ+H G L+ + + MYMRCG DA +FD M
Sbjct: 119 LPNLFKVCAELSAFKVGKQIHCVSCVSG-LDMDAFVQGSMFHMYMRCGRMGDARKVFDRM 177
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
++ + +A++ + + G E+ +++ + M SG
Sbjct: 178 SDKDVVTCSALLCAYARKGCLEEVVRILSEMES----------SGI-------------- 213
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
N ++WN ++ + R+G+ +EAV +F++++ D +++V+ + D
Sbjct: 214 ---EANIVSWNGILSGFNRSGYHKEAVVMFQKIHH---LGFCPDQVTVSSVLPSVGDSEM 267
Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
L G+ IH +++ GL D + S+++++YGK G + N + + +A I+G
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327
Query: 248 YANCGKMNDARRVFD----RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
+ G ++ A +F+ +T + + V W S+I+G N +D EAL LF +M+ GV +
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 387
Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
T+ S+L AC ++ L HG+ HG A +V ++D+V V SAL+D Y+K
Sbjct: 388 HVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK------------ 435
Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
CGRI ++ +F MP K+L+ WNS++ G S +G E + +
Sbjct: 436 -------------------CGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSI 476
Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
F ++ + L+ D S S++SAC + + G + F
Sbjct: 477 FESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 131/264 (49%), Gaps = 4/264 (1%)
Query: 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
++L + D + + LI+ Y+N NDA V D + ++S+I T+
Sbjct: 40 RILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQ 99
Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347
++ +F +M +G++ D+ L ++ C+ L + GKQ+H +C G+ D V ++
Sbjct: 100 SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFH 159
Query: 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK----SLIS 403
Y + G DA K+F + D + + ++ Y+ G +E+ I M + +++S
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVS 219
Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
WN ++ G +++G EA+ +F ++ L D+ +++SV+ + + L +G + V
Sbjct: 220 WNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVI 279
Query: 464 IIGLDSDQIISTSLVDFYCKCGFI 487
GL D+ + ++++D Y K G +
Sbjct: 280 KQGLLKDKCVISAMIDMYGKSGHV 303
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 15/203 (7%)
Query: 55 GNPTDALLLFDEMP----RRNCFSWNAMIEG---FMKLGHKEKSLQLFNVMPQ--KNDFS 105
G +AL LF EM + N + +M+ LGH +S F V N
Sbjct: 367 GKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG-RSTHGFAVRVHLLDNVHV 425
Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
+ LI +AK G + ++ +FN MP +N + WNS+++ + +G A+E + +F+ L +
Sbjct: 426 GSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESL---MR 482
Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-GLDFDSVLGSSLVNLYGKCGDFN 224
RL+ D +++ AC + + G + + G+ S +VNL G+ G
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542
Query: 225 SANQVLNMMK-EPDDFCLSALIS 246
A ++ M EPD AL++
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLN 565
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ +L +C ++ G+ H ++ +L++ + + + L+ MY +CG + ++F+ M
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDN-VHVGSALIDMYAKCGRINLSQIVFNMM 449
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDF-SWNMLISGFAKAGELKTAR 123
P +N WN+++ GF G ++ + +F + + K DF S+ L+S + G
Sbjct: 450 PTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGW 509
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
F M I ++ M++ R G +EA L KE+ + D+ + +
Sbjct: 510 KYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEM------PFEPDSCVWGAL 563
Query: 179 IGAC-----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233
+ +C DLA + K H G VL L N+Y G + + + N M
Sbjct: 564 LNSCRLQNNVDLAEIAAEKLFHLEPENPG---TYVL---LSNIYAAKGMWTEVDSIRNKM 617
Query: 234 K 234
+
Sbjct: 618 E 618
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/487 (27%), Positives = 214/487 (43%), Gaps = 106/487 (21%)
Query: 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNC 72
+S ++ S+H G+QLH LK G + N L+ Y++ A +FDEM R+
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSG-FGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261
Query: 73 FSWNAMIEGFMKLGHKEKSLQLFNVMP--------------------------------- 99
SWN++I G++ G EK L +F M
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 321
Query: 100 ------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREA 153
+ D N L+ ++K G+L +A+ +F +M R+ +++ SMI Y R G A EA
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEA 381
Query: 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSL 213
V+LF+E+ E + D + + V+ CA L+ GK++H I N L FD + ++L
Sbjct: 382 VKLFEEMEE---EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNAL 438
Query: 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWN 273
+++Y KCG A V + M+ D +IS WN
Sbjct: 439 MDMYAKCGSMQEAELVFSEMRVKD------IIS-------------------------WN 467
Query: 274 SMISGYISNNEDTEALLLFH-KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
++I GY N EAL LF+ + D T+A VL AC+SL + G+++HG+ +
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527
Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
G D VA++L+D Y+K CG + A +
Sbjct: 528 NGYFSDRHVANSLVDMYAK-------------------------------CGALLLAHML 556
Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
F + +K L+SW MI G +G EA+ LF M + + D+ S S++ AC++ +
Sbjct: 557 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 616
Query: 453 ELGEQVF 459
+ G + F
Sbjct: 617 DEGWRFF 623
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 137/520 (26%), Positives = 231/520 (44%), Gaps = 110/520 (21%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNSTLPIANRLLQMYMRCGNPTDALLLFDE 66
L +LQ C S+ GK++ G +++S L ++L MY CG+ +A +FDE
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNL--GSKLSLMYTNCGDLKEASRVFDE 154
Query: 67 MPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------------------------- 98
+ WN ++ K G S+ LF M
Sbjct: 155 VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG 214
Query: 99 ------------PQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146
++N N L++ + K + +AR +F++M R+ I+WNS+I+ YV
Sbjct: 215 EQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
NG A + + +F ++ LV ++ D + +V CAD + G+ +HS
Sbjct: 274 NGLAEKGLSVFVQM---LVSGIEIDLATIVSVFAGCADSRLISLGRAVHS---------- 320
Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
+G V D FC + L+ Y+ CG ++ A+ VF +D
Sbjct: 321 --IG------------------VKACFSREDRFC-NTLLDMYSKCGDLDSAKAVFREMSD 359
Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
S V + SMI+GY EA+ LF +M G+ D T+ +VL+ C+ L+ GK+V
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
H + + D+ V++AL+D +Y+ CG +
Sbjct: 420 HEWIKENDLGFDIFVSNALMD-------------------------------MYAKCGSM 448
Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF-CNMNKLDLRMDKFSLASVISA 445
++A+ +F M K +ISWN++I G S+N EAL LF + + D+ ++A V+ A
Sbjct: 449 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508
Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
CA++S+ + G ++ + G SD+ ++ SLVD Y KCG
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCG 548
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 186/379 (49%), Gaps = 65/379 (17%)
Query: 113 FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA 172
+ G+LK A +F+++ A+ WN +++ ++G ++ LFK++ S VE D+
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEM---DS 195
Query: 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232
+ + V + + L ++ G+Q+H IL +G + +G+SLV Y K NQ
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLK-------NQ---- 244
Query: 233 MKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF 292
+++ AR+VFD T+ + WNS+I+GY+SN + L +F
Sbjct: 245 --------------------RVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284
Query: 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352
+M +G+ D +T+ SV + C+ + G+ VH +GV
Sbjct: 285 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH----SIGV----------------- 323
Query: 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
AC FS + NT++ +YS CG ++ AK +FR M ++S++S+ SMI G +
Sbjct: 324 ----KAC--FSR----EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 373
Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
+ G EA+ LF M + + D +++ +V++ CA L+ G++V + L D
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIF 433
Query: 473 ISTSLVDFYCKCGFIKMDE 491
+S +L+D Y KCG ++ E
Sbjct: 434 VSNALMDMYAKCGSMQEAE 452
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 128/280 (45%), Gaps = 48/280 (17%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L C + + GK++H ++K+ L + ++N L+ MY +CG+ +A L+F EM +
Sbjct: 403 VLNCCARYRLLDEGKRVH-EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 461
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS------------------------- 105
+ SWN +I G+ K + ++L LFN++ ++ FS
Sbjct: 462 DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Query: 106 ---------------WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
N L+ +AK G L A LF+D+ ++ ++W MI Y +GF
Sbjct: 522 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 581
Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
+EA+ LF ++ +E D +++ AC+ ++ G + +I+ + + +
Sbjct: 582 KEAIALFNQMRQAGIE---ADEISFVSLLYACSHSGLVDEGWRFF-NIMRHECKIEPTVE 637
Query: 211 --SSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG 247
+ +V++ + GD A + + NM PD AL+ G
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454
T ++S+ N+ + ++G+ A+ L C K D+ D +L SV+ CA+ SL+
Sbjct: 55 TTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKD 112
Query: 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
G++V + G D + + L Y CG +K
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLK 146
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/525 (25%), Positives = 234/525 (44%), Gaps = 110/525 (20%)
Query: 4 RIDY--LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61
R+DY LA LQS N I K++H LK + + N L+ +R G+ A
Sbjct: 82 RVDYALLAEWLQSSNGMRLI---KRIHAMALK-CFDDQVIYFGNNLISSCVRLGDLVYAR 137
Query: 62 LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF--------------------NVMPQK 101
+FD MP +N +W AMI+G++K G ++++ LF N+ ++
Sbjct: 138 KVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRR 197
Query: 102 NDFSWNMLISG-------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIH 142
+F + G +A+ GEL +A F+ M ++ I+W ++I
Sbjct: 198 AEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVIS 257
Query: 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202
R G +A+ +F + L + F + +++ AC++ AL +G+Q+HS ++
Sbjct: 258 ACSRKGHGIKAIGMFIGM---LNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRM 314
Query: 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFD 262
+ D +G+SL+++Y KCG+ ++D R+VFD
Sbjct: 315 IKTDVFVGTSLMDMYAKCGE-------------------------------ISDCRKVFD 343
Query: 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
++ ++V W S+I+ + EA+ LF M+R ++ + T+ S+L AC S+G L
Sbjct: 344 GMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLL 403
Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
GK++H K + +V + S L+ Y K G DA + +L
Sbjct: 404 GKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQL----------------- 446
Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
P++ ++SW +MI G S G EALD M + + + F+ +S
Sbjct: 447 --------------PSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSA 492
Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
+ ACAN SL +G + + S+ + ++L+ Y KCGF+
Sbjct: 493 LKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFV 537
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/492 (26%), Positives = 212/492 (43%), Gaps = 109/492 (22%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL C+ +G+Q+H + +K G+ N L + + L+ Y +CG T AL FD M +
Sbjct: 190 LLNLCSRRAEFELGRQVHGNMVKVGVGN--LIVESSLVYFYAQCGELTSALRAFDMMEEK 247
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLF----------------------------------- 95
+ SW A+I + GH K++ +F
Sbjct: 248 DVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVH 307
Query: 96 ----NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151
M + + F L+ +AK GE+ R +F+ M RN + W S+I + R GF
Sbjct: 308 SLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGE 367
Query: 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211
EA+ LF+ + L + + +++ AC + AL GK++H+ I+ N ++ + +GS
Sbjct: 368 EAISLFRIMKR---RHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGS 424
Query: 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271
+LV LY K CG+ DA V + V
Sbjct: 425 TLVWLYCK-------------------------------CGESRDAFNVLQQLPSRDVVS 453
Query: 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331
W +MISG S ++EAL +M + GV + T +S L AC++ L G+ +H A
Sbjct: 454 WTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAK 513
Query: 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKH 391
K + +V V SAL+ Y+K G S+A +
Sbjct: 514 KNHALSNVFVGSALIHMYAKCGFVSEAFR------------------------------- 542
Query: 392 IFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451
+F +MP K+L+SW +MI+G ++NG EAL L M +D + A+++S C +I
Sbjct: 543 VFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDI-- 600
Query: 452 LELGEQVFARVT 463
EL E V + T
Sbjct: 601 -ELDEAVESSAT 611
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 132/505 (26%), Positives = 225/505 (44%), Gaps = 84/505 (16%)
Query: 19 HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAM 78
+S +G++++ H +L S I RLL++ + + +FDEMP+R +
Sbjct: 25 YSPDLGRRIYGH-----VLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALA---- 75
Query: 79 IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWN 138
+++G S L + + N ++ +AK ++ A F D ++ AWN
Sbjct: 76 ----LRIGKAVHSKSLILGIDSEGRLG-NAIVDLYAKCAQVSYAEKQF-DFLEKDVTAWN 129
Query: 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHI 198
SM+ Y G + +R F L + ++ + F + V+ CA +E+G+QIH +
Sbjct: 130 SMLSMYSSIGKPGKVLRSFVSLFEN---QIFPNKFTFSIVLSTCARETNVEFGRQIHCSM 186
Query: 199 LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG------ 252
+ GL+ +S G +LV++Y KC + A +V + +P+ C + L SGY G
Sbjct: 187 IKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAV 246
Query: 253 -----------------------------KMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
K+ DAR +F + V WN MISG+
Sbjct: 247 LVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRG 306
Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
+T A+ F MR++ V STL SVLSA + L+ G VH A K+G+ ++ V S
Sbjct: 307 CETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGS 366
Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
+L +++YS C ++E A +F + K+ +
Sbjct: 367 SL-------------------------------VSMYSKCEKMEAAAKVFEALEEKNDVF 395
Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
WN+MI G + NG + ++LF +M +D F+ S++S CA LE+G Q + +
Sbjct: 396 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIII 455
Query: 464 IIGLDSDQIISTSLVDFYCKCGFIK 488
L + + +LVD Y KCG ++
Sbjct: 456 KKKLAKNLFVGNALVDMYAKCGALE 480
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 147/522 (28%), Positives = 226/522 (43%), Gaps = 108/522 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L + ++ +G +H +K G L S + + + L+ MY +C A +F+ +
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLG-LASNIYVGSSLVSMYSKCEKMEAAAKVFEAL 388
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
+N WNAMI G+ G K ++LF M
Sbjct: 389 EEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGS 448
Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
KN F N L+ +AK G L+ AR +F M R+ + WN++I YV++
Sbjct: 449 QFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDE 508
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
EA LFK +N + + D LA+ + AC + L GKQ+H + GLD D
Sbjct: 509 NESEAFDLFKRMN---LCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLH 565
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
GSSL+++Y K CG + DAR+VF + S
Sbjct: 566 TGSSLIDMYSK-------------------------------CGIIKDARKVFSSLPEWS 594
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
V N++I+GY NN + EA++LF +M GV T A+++ AC L G Q HG
Sbjct: 595 VVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHG 653
Query: 329 HACKVGVIDD-VIVASALLDTY-SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
K G + + +LL Y + RGM ++AC LFSEL
Sbjct: 654 QITKRGFSSEGEYLGISLLGMYMNSRGM-TEACALFSELS-------------------- 692
Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
KS++ W M+ G SQNG EAL + M + D+ + +V+ C
Sbjct: 693 ----------SPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVC 742
Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
+ +SSL G + + + + D D++ S +L+D Y KCG +K
Sbjct: 743 SVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMK 784
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/475 (26%), Positives = 209/475 (44%), Gaps = 106/475 (22%)
Query: 47 LLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----- 101
++ Y+R G DA LLF EM + +WN MI G K G + +++ F M +
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST 326
Query: 102 ----------------------------------NDFSWNMLISGFAKAGELKTARTLFN 127
N + + L+S ++K +++ A +F
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386
Query: 128 DMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187
+ +N + WN+MI Y NG + + + LF ++ S D F +++ CA
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSS---GYNIDDFTFTSLLSTCAASHD 443
Query: 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247
LE G Q HS I+ L + +G++LV++Y K
Sbjct: 444 LEMGSQFHSIIIKKKLAKNLFVGNALVDMYAK---------------------------- 475
Query: 248 YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307
CG + DAR++F+R D +V WN++I Y+ + ++EA LF +M G++ D + L
Sbjct: 476 ---CGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACL 532
Query: 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367
AS L AC+ + L GKQVH + K G+ D+ S+L+D YSK G+ DA K+FS L
Sbjct: 533 ASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPE 592
Query: 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427
+ + +N +I YS +E+A +F+ M L++ +P E
Sbjct: 593 WSVVSMNALIAGYSQ-NNLEEAVVLFQEM--------------LTRGVNPSE-------- 629
Query: 428 NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDFY 481
+ A+++ AC SL LG Q ++T G S+ + + SL+ Y
Sbjct: 630 ---------ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMY 675
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 160/361 (44%), Gaps = 78/361 (21%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA L++C H ++ GKQ+H +K G L+ L + L+ MY +CG DA +F +
Sbjct: 532 LASTLKACTHVHGLYQGKQVHCLSVKCG-LDRDLHTGSSLIDMYSKCGIIKDARKVFSSL 590
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM---------------------PQK----N 102
P + S NA+I G+ + + E+++ LF M P+
Sbjct: 591 PEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGT 649
Query: 103 DFSWNMLISGFAKAGE---------------LKTARTLFNDMPRRNAIA-WNSMIHCYVR 146
F + GF+ GE + A LF+++ +I W M+ + +
Sbjct: 650 QFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQ 709
Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
NGF EA++ +KE+ D V D TV+ C+ L++L G+ IHS I D D
Sbjct: 710 NGFYEEALKFYKEMRHDGV---LPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLD 766
Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
+ ++L+++Y A CG M + +VFD
Sbjct: 767 ELTSNTLIDMY-------------------------------AKCGDMKGSSQVFDEMRR 795
Query: 267 TSSVM-WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
S+V+ WNS+I+GY N +AL +F MR++ ++ D T VL+ACS G + G++
Sbjct: 796 RSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRK 855
Query: 326 V 326
+
Sbjct: 856 I 856
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
+L +G+ V ++ I+G+DS+ + ++VD Y KC + E
Sbjct: 75 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAE 115
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 143/517 (27%), Positives = 230/517 (44%), Gaps = 119/517 (23%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLG---HKEKSLQLFNVMPQK 101
N ++ Y++ A LFD MP+R+ +WN MI G++ G E++ +LF+ MP +
Sbjct: 75 NTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSR 134
Query: 102 NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKEL- 160
+ FSWN +ISG+AK + A LF MP RNA++W++MI + +NG AV LF+++
Sbjct: 135 DSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMP 194
Query: 161 ---NSDLV---------ERLQCDAFILAT------------------VIG---------- 180
+S L ERL A++L ++G
Sbjct: 195 VKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAA 254
Query: 181 -----ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235
DL ++G + N + ++S ++ Y K GD SA + + MK+
Sbjct: 255 RCLFDQIPDLCGDDHGGEFRERFCKNVVSWNS-----MIKAYLKVGDVVSARLLFDQMKD 309
Query: 236 PDDFCLSALISGYANCGKMNDA-------------------------------RRVFDRT 264
D + +I GY + +M DA R F++T
Sbjct: 310 RDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKT 369
Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
+ +V WNS+I+ Y N + EA+ LF +M G D TL S+LSA + L L G
Sbjct: 370 PEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGM 429
Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
Q+H K VI DV V +AL IT+YS CG
Sbjct: 430 QMHQIVVKT-VIPDVPVHNAL-------------------------------ITMYSRCG 457
Query: 385 RIEDAKHIFRTMP-NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
I +++ IF M + +I+WN+MI G + +G+ EAL+LF +M + + SV+
Sbjct: 458 EIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVL 517
Query: 444 SACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVD 479
+ACA+ + E Q + +++ ++ +SLV+
Sbjct: 518 NACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVN 554
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 170/354 (48%), Gaps = 66/354 (18%)
Query: 45 NRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104
N +++ Y++ G+ A LLFD+M R+ SWN MI+G++ + E + LF+ MP ++
Sbjct: 285 NSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAH 344
Query: 105 SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164
SWNM++SG+A G ++ AR F P ++ ++WNS+I Y +N +EAV LF +N
Sbjct: 345 SWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMN--- 401
Query: 165 VERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224
+E + D L +++ A L L G Q+H I+V + D + ++L+ +Y +CG+
Sbjct: 402 IEGEKPDPHTLTSLLSASTGLVNLRLGMQMH-QIVVKTVIPDVPVHNALITMYSRCGEIM 460
Query: 225 SANQVLNMMK-EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
+ ++ + MK + + +A+I GYA G
Sbjct: 461 ESRRIFDEMKLKREVITWNAMIGGYAFHGNA----------------------------- 491
Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
+EAL LF M+ NG+ T SVL+AC+ G ++ K
Sbjct: 492 --SEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQF---------------V 534
Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
+++ Y K+ +++ Y ++++ V S G+ E+A +I +MP
Sbjct: 535 SMMSVY----------KIEPQMEHY-----SSLVNVTSGQGQFEEAMYIITSMP 573
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L LL + ++ +G Q+H +K I + +P+ N L+ MY RCG ++ +FDEM
Sbjct: 412 LTSLLSASTGLVNLRLGMQMHQIVVKTVIPD--VPVHNALITMYSRCGEIMESRRIFDEM 469
Query: 68 P-RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNM----LISGFAKAGELKTA 122
+R +WNAMI G+ G+ ++L LF M + ++ +++ A AG + A
Sbjct: 470 KLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEA 529
Query: 123 RTLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177
+ F M I ++S+++ G EA+ + + + D +
Sbjct: 530 KAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMP------FEPDKTVWGA 583
Query: 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS----LVNLYGKCGDFNSANQV-LNM 232
++ AC Y +H+ + S+ L N+Y G ++ A+QV +NM
Sbjct: 584 LLDACRI-----YNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNM 638
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 182 bits (461), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 142/517 (27%), Positives = 230/517 (44%), Gaps = 104/517 (20%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C+ + G+Q+H +K G+ N + LL MY +CG +A +F + +
Sbjct: 279 LGACSQSENSGFGRQIHCDVVKMGLHNDPY-VCTSLLSMYSKCGMVGEAETVFSCVVDKR 337
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG--------------- 112
WNAM+ + + + +L LF M QK + F+ + +IS
Sbjct: 338 LEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHA 397
Query: 113 --------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
++K G A +F M ++ +AW S+I +NG +E
Sbjct: 398 ELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKE 457
Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
A+++F ++ D + L+ D+ I+ +V ACA L AL +G Q+H ++ GL + +GSS
Sbjct: 458 ALKVFGDMKDD-DDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSS 516
Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
L++LY K CG A +VF + + V W
Sbjct: 517 LIDLYSK-------------------------------CGLPEMALKVFTSMSTENMVAW 545
Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
NSMIS Y NN ++ LF+ M G+ D+ ++ SVL A SS L GK +HG+ +
Sbjct: 546 NSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 605
Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
+G+ PSD T L N +I +Y CG + A++I
Sbjct: 606 LGI-------------------PSD------------THLKNALIDMYVKCGFSKYAENI 634
Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
F+ M +KSLI+WN MI G +G I AL LF M K D + S+ISAC + +
Sbjct: 635 FKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFV 694
Query: 453 ELGEQVFARVTI-IGLDSDQIISTSLVDFYCKCGFIK 488
E G+ +F + G++ + ++VD + G ++
Sbjct: 695 EEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLE 731
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 138/510 (27%), Positives = 217/510 (42%), Gaps = 108/510 (21%)
Query: 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP-RRNCFSWNAMIEGF 82
GKQ+H F+ + L++ + L+ MY + G DA +F E+ + N WN MI GF
Sbjct: 189 GKQIH-GFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGF 247
Query: 83 MKLGHKEKSLQLFNV--------------------------------------MPQKND- 103
G E SL L+ + M ND
Sbjct: 248 GGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDP 307
Query: 104 FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
+ L+S ++K G + A T+F+ + + WN+M+ Y N + A+ LF +
Sbjct: 308 YVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQ- 366
Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
+ + D+F L+ VI C+ L YGK +H+ + + S + S
Sbjct: 367 --KSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIES------------ 412
Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
AL++ Y+ CG DA VF + V W S+ISG N
Sbjct: 413 -------------------ALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNG 453
Query: 284 EDTEALLLFHKMRRN--GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
+ EAL +F M+ + + D+ + SV +AC+ L L G QVHG K G++ +V V
Sbjct: 454 KFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFV 513
Query: 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL 401
S+L+D YSK CG E A +F +M +++
Sbjct: 514 GSSLIDLYSK-------------------------------CGLPEMALKVFTSMSTENM 542
Query: 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461
++WNSMI S+N P ++DLF M + D S+ SV+ A ++ +SL G+ +
Sbjct: 543 VAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGY 602
Query: 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
+G+ SD + +L+D Y KCGF K E
Sbjct: 603 TLRLGIPSDTHLKNALIDMYVKCGFSKYAE 632
Score = 166 bits (420), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 141/538 (26%), Positives = 226/538 (42%), Gaps = 117/538 (21%)
Query: 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALL 62
T + LL++C+ ++ GK +H + G IA L+ MY++CG A+
Sbjct: 58 TSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPF-IATSLVNMYVKCGFLDYAVQ 116
Query: 63 LFDEMPR-------RNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLIS 111
+FD + R+ WN+MI+G+ K ++ + F M + + FS ++++S
Sbjct: 117 VFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVS 176
Query: 112 GFAKAGE-----------------------LKTA---------------RTLFNDMPRRN 133
K G LKTA R + N
Sbjct: 177 VMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSN 236
Query: 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193
+ WN MI + +G ++ L+ ++ V +L +F A +GAC+ +G+Q
Sbjct: 237 VVLWNVMIVGFGGSGICESSLDLYMLAKNNSV-KLVSTSFTGA--LGACSQSENSGFGRQ 293
Query: 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGK 253
IH ++ GL D + ++L+S Y+ CG
Sbjct: 294 IHCDVVKMGL-------------------------------HNDPYVCTSLLSMYSKCGM 322
Query: 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313
+ +A VF D +WN+M++ Y N+ AL LF MR+ VL D+ TL++V+S
Sbjct: 323 VGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISC 382
Query: 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILL 373
CS LG +GK VH K + + SALL YSK G DA +F
Sbjct: 383 CSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVF----------- 431
Query: 374 NTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-- 431
++M K +++W S+I GL +NG EAL +F +M D
Sbjct: 432 --------------------KSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDS 471
Query: 432 LRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
L+ D + SV +ACA + +L G QV + GL + + +SL+D Y KCG +M
Sbjct: 472 LKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 154/356 (43%), Gaps = 58/356 (16%)
Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
NS I ++ G +A+ L+ + D F +++ AC+ L L YGK IH
Sbjct: 28 NSGIRALIQKGEYLQALHLYSK--HDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85
Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
++V G +D + +SLVN+Y KCG + A QV + G++ A
Sbjct: 86 VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFD---------------GWSQSQSGVSA 130
Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA-CSS 316
R V +WNSMI GY E + F +M GV DA +L+ V+S C
Sbjct: 131 RDV---------TVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKE 181
Query: 317 LGF-LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
F E GKQ+HG + + D + +AL+D Y K G+ DA ++F E
Sbjct: 182 GNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVE----------- 230
Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
IED ++ + WN MIVG +G +LDL+ +++
Sbjct: 231 ----------IEDKSNV---------VLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLV 271
Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491
S + AC+ + G Q+ V +GL +D + TSL+ Y KCG + E
Sbjct: 272 STSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAE 327
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 135/311 (43%), Gaps = 42/311 (13%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ +L + ++ S+ GK LH + L+ GI + T + N L+ MY++CG A +F +M
Sbjct: 580 ITSVLVAISSTASLLKGKSLHGYTLRLGIPSDT-HLKNALIDMYVKCGFSKYAENIFKKM 638
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTAR 123
++ +WN MI G+ G +L LF+ M + +D ++ LIS +G ++ +
Sbjct: 639 QHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGK 698
Query: 124 TLFNDMPRRNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
+F M + I N +M+ R G EA K + ++ D+ I +
Sbjct: 699 NIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAM------PIEADSSIWLCL 752
Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSS---LVNLYGKCGDFNSANQVLNMMKE 235
+ A +E G +L + GS+ L+NLY + G N A ++L +MKE
Sbjct: 753 LSASRTHHNVELGILSAEKLL----RMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKE 808
Query: 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295
+ C + V DRT N SG S+ E + +++
Sbjct: 809 KG-------LHKQPGCSWI----EVSDRT--------NVFFSGGSSSPMKAEIFNVLNRL 849
Query: 296 RRNGVLEDAST 306
+ N V ED +T
Sbjct: 850 KSNMVDEDKAT 860
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 400 SLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQV 458
S S NS I L Q G ++AL L+ + F+ S++ AC+ +++L G+ +
Sbjct: 23 SPASINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTI 82
Query: 459 FARVTIIGLDSDQIISTSLVDFYCKCGFI 487
V ++G D I+TSLV+ Y KCGF+
Sbjct: 83 HGSVVVLGWRYDPFIATSLVNMYVKCGFL 111
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 143/528 (27%), Positives = 245/528 (46%), Gaps = 115/528 (21%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
+ LL+SC +GK +H ++ I ++ + N L+ +Y + G+ A +F+ M
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFETM 123
Query: 68 PR---RNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDFSWNMLI-----SGF 113
R R+ SW+AM+ + G + ++++F ++P ND+ + +I S F
Sbjct: 124 RRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP--NDYCYTAVIRACSNSDF 181
Query: 114 AKAGEL--------------------------------KTARTLFNDMPRRNAIAWNSMI 141
G + + A +F+ M N + W MI
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241
Query: 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201
++ GF REA+R F ++ ++ + D F L++V ACA+L L GKQ+HS + +
Sbjct: 242 TRCMQMGFPREAIRFFLDM---VLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298
Query: 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261
GL D + SLV++Y KC SA+ G ++D R+VF
Sbjct: 299 GLVDD--VECSLVDMYAKC----SAD------------------------GSVDDCRKVF 328
Query: 262 DRTTDTSSVMWNSMISGYISN-NEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGF 319
DR D S + W ++I+GY+ N N TEA+ LF +M G +E + T +S AC +L
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388
Query: 320 LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379
GKQV G A K G+ + VA N++I++
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVA-------------------------------NSVISM 417
Query: 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439
+ R+EDA+ F ++ K+L+S+N+ + G +N + +A L + + +L + F+
Sbjct: 418 FVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTF 477
Query: 440 ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
AS++S AN+ S+ GEQ+ ++V +GL +Q + +L+ Y KCG I
Sbjct: 478 ASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/525 (21%), Positives = 223/525 (42%), Gaps = 117/525 (22%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP-TDALLLFDEMPR 69
++++C+ + VG+ +K G S + + L+ M+++ N +A +FD+M
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231
Query: 70 RNCFSWNAMIEGFMKLGHKEKSLQLF--------------------------NVMPQKND 103
N +W MI M++G ++++ F N+ K
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Query: 104 FSWNM-----------LISGFAKA---GELKTARTLFNDMPRRNAIAWNSMIHCYVRN-G 148
SW + L+ +AK G + R +F+ M + ++W ++I Y++N
Sbjct: 292 HSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN 351
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
A EA+ LF E+ + ++ + F ++ AC +L+ GKQ+ GL +S
Sbjct: 352 LATEAINLFSEMITQ--GHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409
Query: 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
+ AN V++M + D +M DA+R F+ ++ +
Sbjct: 410 V----------------ANSVISMFVKSD---------------RMEDAQRAFESLSEKN 438
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328
V +N+ + G N +A L ++ + A T AS+LS +++G + G+Q+H
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498
Query: 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388
K+G+ +C + + N +I++YS CG I+
Sbjct: 499 QVVKLGL----------------------SC---------NQPVCNALISMYSKCGSIDT 527
Query: 389 AKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448
A +F M N+++ISW SMI G +++G I L+ F M + ++ ++ + +++SAC++
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSH 587
Query: 449 ISSLELGEQVFARVTIIGLDSDQIISTS------LVDFYCKCGFI 487
+ + G + F + D I +VD C+ G +
Sbjct: 588 VGLVSEGWRHFN-----SMYEDHKIKPKMEHYACMVDLLCRAGLL 627
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 158/360 (43%), Gaps = 81/360 (22%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC---GNPTDALLLF 64
L+ + +C ++ +GKQLH ++ G+++ + L+ MY +C G+ D +F
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVF 328
Query: 65 DEMPRRNCFSWNAMIEGFMK-LGHKEKSLQLFNVM-----PQKNDFSW------------ 106
D M + SW A+I G+MK +++ LF+ M + N F++
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388
Query: 107 -----------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHC 143
N +IS F K+ ++ A+ F + +N +++N+ +
Sbjct: 389 PRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDG 448
Query: 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL 203
RN +A +L E+ L AF A+++ A++ ++ G+QIHS ++ GL
Sbjct: 449 TCRNLNFEQAFKLLSEITE---RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGL 505
Query: 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR 263
+ + ++L+++Y KCG ++A++V N M+
Sbjct: 506 SCNQPVCNALISMYSKCGSIDTASRVFNFME----------------------------- 536
Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
+ + + W SMI+G+ + L F++M GV + T ++LSACS +G + G
Sbjct: 537 --NRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 138/318 (43%), Gaps = 67/318 (21%)
Query: 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVL 230
D+ ++++ +C GK +H+ ++ ++ DSVL +SL++LY K GD A V
Sbjct: 61 DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120
Query: 231 NMMK---EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTE 287
M+ + D SA+++ Y N G+ DA +VF E
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVF------------------------VE 156
Query: 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALL 346
L L G++ + +V+ ACS+ F+ G+ G K G + DV V +L+
Sbjct: 157 FLEL-------GLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLI 209
Query: 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS 406
D + K G S E+A +F M ++++W
Sbjct: 210 DMFVK-GENS-----------------------------FENAYKVFDKMSELNVVTWTL 239
Query: 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466
MI Q G P EA+ F +M DKF+L+SV SACA + +L LG+Q+ + G
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299
Query: 467 LDSDQIISTSLVDFYCKC 484
L D + SLVD Y KC
Sbjct: 300 LVDD--VECSLVDMYAKC 315
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 19/238 (7%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
A LL SI G+Q+H +K G L+ P+ N L+ MY +CG+ A +F+ M
Sbjct: 477 FASLLSGVANVGSIRKGEQIHSQVVKLG-LSCNQPVCNALISMYSKCGSIDTASRVFNFM 535
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISGFAKAGELKTAR 123
RN SW +MI GF K G + L+ FN M ++ N+ ++ ++S + G +
Sbjct: 536 ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGW 595
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
FN M + I + M+ R G +A + Q D + T
Sbjct: 596 RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP------FQADVLVWRTF 649
Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGS-SLVNLYGKCGDFNSANQVLNMMKE 235
+GAC + E GK IL LD + L N+Y G + + ++ MKE
Sbjct: 650 LGACRVHSNTELGKLAARKIL--ELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 418 IEALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476
+ ALDL M + +R MD + +S++ +C LG+ V AR+ ++ D ++ S
Sbjct: 46 VSALDL---MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102
Query: 477 LVDFYCKCG 485
L+ Y K G
Sbjct: 103 LISLYSKSG 111
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/522 (25%), Positives = 235/522 (45%), Gaps = 105/522 (20%)
Query: 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL 63
R+ L+ +C++ S+ G+++H H L T+ + N +L MY +CG+ DA +
Sbjct: 66 RLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTI-LNNHILSMYGKCGSLRDAREV 124
Query: 64 FDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLF------NVMPQKNDF------------- 104
FD MP RN S+ ++I G+ + G ++++L+ +++P + F
Sbjct: 125 FDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDV 184
Query: 105 --------------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCY 144
+ N LI+ + + ++ A +F +P ++ I+W+S+I +
Sbjct: 185 GLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGF 244
Query: 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD 204
+ GF EA+ KE+ S V + +I + + AC+ L +YG QIH + + L
Sbjct: 245 SQLGFEFEALSHLKEMLSFGV--FHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELA 302
Query: 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRT 264
+++ G SL ++Y +CG NSA +V + ++ PD + +I+G AN G +
Sbjct: 303 GNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYAD--------- 353
Query: 265 TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
EA+ +F +MR +G + DA +L S+L A + L G
Sbjct: 354 ----------------------EAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGM 391
Query: 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG 384
Q+H + K G + D+ V N+++T+Y+ C
Sbjct: 392 QIHSYIIKWGFLADLTVC-------------------------------NSLLTMYTFCS 420
Query: 385 RIEDAKHIFRTMPNKS-LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443
+ ++F N + +SWN+++ Q+ P+E L LF M + D ++ +++
Sbjct: 421 DLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLL 480
Query: 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
C ISSL+LG QV GL +Q I L+D Y KCG
Sbjct: 481 RGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCG 522
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 122/525 (23%), Positives = 220/525 (41%), Gaps = 106/525 (20%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
++++C + + +GKQLH +K +S L N L+ MY+R +DA +F +P +
Sbjct: 174 IIKACASSSDVGLGKQLHAQVIKLES-SSHLIAQNALIAMYVRFNQMSDASRVFYGIPMK 232
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISG------------------ 112
+ SW+++I GF +LG + ++L M F N I G
Sbjct: 233 DLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQI 292
Query: 113 ----------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
+A+ G L +AR +F+ + R + +WN +I NG+A
Sbjct: 293 HGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYA 352
Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
EAV +F ++ S DA L +++ A AL G QIHS+I+ G D +
Sbjct: 353 DEAVSVFSQMRSS---GFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVC 409
Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
+SL+ +Y C D +C L + N + SV
Sbjct: 410 NSLLTMYTFCSDL---------------YCCFNLFEDFRN---------------NADSV 439
Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330
WN++++ + + + E L LF M + D T+ ++L C + L+ G QVH ++
Sbjct: 440 SWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYS 499
Query: 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390
K G+ + + + L+D Y+K G A ++F + D + +T+I Y
Sbjct: 500 LKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGY---------- 549
Query: 391 HIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450
+Q+G EAL LF M + + + V++AC+++
Sbjct: 550 ---------------------AQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVG 588
Query: 451 SLELGEQVFARV-TIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494
+E G +++A + T G+ + + +VD + G + E ++
Sbjct: 589 LVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFI 633
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 184/422 (43%), Gaps = 79/422 (18%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L++C++ G Q+H +K + + + L MY RCG A +FD++ R +
Sbjct: 277 LKACSSLLRPDYGSQIHGLCIKSELAGNAIA-GCSLCDMYARCGFLNSARRVFDQIERPD 335
Query: 72 CFSWNAMIEGFMKLGHKEKSLQLFNVM-----------------PQKNDFS--------- 105
SWN +I G G+ ++++ +F+ M Q +
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395
Query: 106 ----W---------NMLISGFAKAGELKTARTLFNDMPRRNA--IAWNSMIHCYVRNGFA 150
W N L++ + +L LF D R NA ++WN+++ +++
Sbjct: 396 YIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDF-RNNADSVSWNTILTACLQHEQP 454
Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
E +RLFK + LV + D + ++ C ++++L+ G Q+H + L GL
Sbjct: 455 VEMLRLFKLM---LVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGL------- 504
Query: 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270
P+ F + LI YA CG + ARR+FD + V
Sbjct: 505 ------------------------APEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVV 540
Query: 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH- 329
W+++I GY + EAL+LF +M+ G+ + T VL+ACS +G +E G +++
Sbjct: 541 SWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATM 600
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIED 388
+ G+ S ++D ++ G ++A + E+K+ D ++ T+++ + G +
Sbjct: 601 QTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHL 660
Query: 389 AK 390
A+
Sbjct: 661 AQ 662
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 152/351 (43%), Gaps = 65/351 (18%)
Query: 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197
N I+ ++ F REA+ F + +++ +I ++I AC+ +L G++IH H
Sbjct: 35 NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYI--SLICACSSSRSLAQGRKIHDH 92
Query: 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257
IL + +D++L + ++++YGKCG A +V + M E + +++I+GY+
Sbjct: 93 ILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQ------- 145
Query: 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317
N + EA+ L+ KM + ++ D S++ AC+S
Sbjct: 146 ------------------------NGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASS 181
Query: 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMI 377
+ GKQ+H K+ +I +AL+ Y + SDA ++F
Sbjct: 182 SDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVF--------------- 226
Query: 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDK 436
+P K LISW+S+I G SQ G EAL M + ++
Sbjct: 227 ----------------YGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNE 270
Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
+ S + AC+++ + G Q+ L + I SL D Y +CGF+
Sbjct: 271 YIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFL 321
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 264 TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEH 322
T T +M N I+ +N EAL F ++N + T S++ ACSS L
Sbjct: 27 TIKTEELM-NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQ 85
Query: 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSS 382
G+++H H D I+ + +L Y K G DA
Sbjct: 86 GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDA------------------------ 121
Query: 383 CGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442
+ +F MP ++L+S+ S+I G SQNG EA+ L+ M + DL D+F+ S+
Sbjct: 122 -------REVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSI 174
Query: 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
I ACA+ S + LG+Q+ A+V + S I +L+ Y +
Sbjct: 175 IKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR 215
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 195/377 (51%), Gaps = 39/377 (10%)
Query: 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166
N L++ + K G A +F++MP R+ IAW S++ + + + L +
Sbjct: 42 NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKT--LSVFSSVGSSS 99
Query: 167 RLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226
L+ D F+ + ++ ACA+L ++++G+Q+H H +V+ D V+ SSLV++Y KCG NSA
Sbjct: 100 GLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSA 159
Query: 227 NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286
V + ++ + +A++SGYA G+ +A +F + W ++ISG++ + +
Sbjct: 160 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGL 219
Query: 287 EALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345
EA +F +MRR V + D L+S++ AC++L G+QVHG +G V +++AL
Sbjct: 220 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNAL 279
Query: 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWN 405
+D Y+K C + AK IF M ++ ++SW
Sbjct: 280 IDMYAK-------------------------------CSDVIAAKDIFSRMRHRDVVSWT 308
Query: 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465
S+IVG++Q+G +AL L+ +M ++ ++ + +I AC+++ +E G ++F +T
Sbjct: 309 SLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMT-- 366
Query: 466 GLDSDQIISTSLVDFYC 482
D I SL + C
Sbjct: 367 ---KDYGIRPSLQHYTC 380
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 156/306 (50%), Gaps = 35/306 (11%)
Query: 182 CADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241
CA L K +H+HI+ G+ L ++LVN+YGKC
Sbjct: 13 CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKC--------------------- 51
Query: 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301
G + A +VFD + W S+++ N + L +F + + L
Sbjct: 52 ----------GAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGL 101
Query: 302 E-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
D ++++ AC++LG ++HG+QVH H +D +V S+L+D Y+K G+ + A
Sbjct: 102 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 161
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
+F ++V +TI M++ Y+ GR E+A +FR +P K+L SW ++I G Q+G +EA
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEA 221
Query: 421 LDLFCNM--NKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478
+F M ++D+ +D L+S++ ACAN+++ G QV V +G DS IS +L+
Sbjct: 222 FSVFTEMRRERVDI-LDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALI 280
Query: 479 DFYCKC 484
D Y KC
Sbjct: 281 DMYAKC 286
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 66/349 (18%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L+++C SI G+Q+H HF+ N + + + L+ MY +CG A +FD + +
Sbjct: 111 LVKACANLGSIDHGRQVHCHFIVSEYANDEV-VKSSLVDMYAKCGLLNSAKAVFDSIRVK 169
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
N SW AM+ G+ K G KE++L+LF ++P KN +SW LISGF ++G+
Sbjct: 170 NTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGK------------ 217
Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
EA +F E+ + V+ L D +L++++GACA+LAA
Sbjct: 218 -------------------GLEAFSVFTEMRRERVDIL--DPLVLSSIVGACANLAASIA 256
Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
G+Q+H ++ G D + ++L+++Y KC D +A + + M+ D ++LI G A
Sbjct: 257 GRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQ 316
Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
G+ +AL L+ M +GV + T +
Sbjct: 317 HGQAE-------------------------------KALALYDDMVSHGVKPNEVTFVGL 345
Query: 311 LSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDA 358
+ ACS +GF+E G+++ K G+ + + LLD + G+ +A
Sbjct: 346 IYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEA 394
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQ-NGSPIEALDLFCNMNKL 430
L NT++ VY CG A +F MP++ I+W S++ L+Q N S +
Sbjct: 40 LANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSS 99
Query: 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
LR D F ++++ ACAN+ S++ G QV + +D+++ +SLVD Y KCG +
Sbjct: 100 GLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLL 156
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 194/384 (50%), Gaps = 36/384 (9%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
+L++C G+Q+H F+K G++ + N L+ +Y R G A + D MP R
Sbjct: 146 VLKACAAFCGFEEGRQIHGLFIKSGLVTDVF-VENTLVNVYGRSGYFEIARKVLDRMPVR 204
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130
+ SWN+++ +++ G +++ LF+ M ++N SWN +ISG+A AG +K A+ +F+ MP
Sbjct: 205 DAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMP 264
Query: 131 RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190
R+ ++WN+M+ Y G E + +F ++ D E+ D F L +V+ ACA L +L
Sbjct: 265 VRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEK--PDGFTLVSVLSACASLGSLSQ 322
Query: 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250
G+ +H +I +G++ + L ++LV++Y KC
Sbjct: 323 GEWVHVYIDKHGIEIEGFLATALVDMYSKC------------------------------ 352
Query: 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310
GK++ A VF T+ WNS+IS + +AL +F +M G + T V
Sbjct: 353 -GKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411
Query: 311 LSACSSLGFLEHGKQVHGHACKVGVIDDVIV-ASALLDTYSKRGMPSDACKLFSELKVYD 369
LSAC+ +G L+ +++ V ++ I ++D + G +A +L +E+ +
Sbjct: 412 LSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADE 471
Query: 370 -TILLNTMITVYSSCGRIEDAKHI 392
+ILL +++ G++E A+ I
Sbjct: 472 ASILLESLLGACKRFGQLEQAERI 495
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 180/393 (45%), Gaps = 69/393 (17%)
Query: 102 NDFSWNMLISGFAKAGELKT---ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFK 158
+ FS + L++ A E KT A ++ N + N NS+I Y + A+ +F+
Sbjct: 70 DTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFR 129
Query: 159 ELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218
E+ L+ + D + V+ ACA E G+QIH + +GL D + ++LVN+YG
Sbjct: 130 EM---LLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYG 186
Query: 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG 278
+ G F A +VL+ M D ++L+S Y G +++AR +FD + + WN MISG
Sbjct: 187 RSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISG 246
Query: 279 YISNNEDTEALLLFHKMR-------------------RNGVLE-------------DAST 306
Y + EA +F M N VLE D T
Sbjct: 247 YAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFT 306
Query: 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366
L SVLSAC+SLG L G+ VH + K G+ + +A+AL+D YSK
Sbjct: 307 LVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK--------------- 351
Query: 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426
CG+I+ A +FR + + +WNS+I LS +G +AL++F
Sbjct: 352 ----------------CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSE 395
Query: 427 MNKLDLRMDKFSLASVISACANISSLELGEQVF 459
M + + + V+SAC ++ L+ ++F
Sbjct: 396 MVYEGFKPNGITFIGVLSACNHVGMLDQARKLF 428
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 152/331 (45%), Gaps = 66/331 (19%)
Query: 192 KQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS---ANQVLNMMKEPDDFCLSALISGY 248
+Q H+ +L GL D+ S LV + + A+ +LN + P+ F +++I Y
Sbjct: 56 QQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAY 115
Query: 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308
AN + T V AL +F +M V D +
Sbjct: 116 AN--------------SSTPEV-----------------ALTVFREMLLGPVFPDKYSFT 144
Query: 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----------MP-- 355
VL AC++ E G+Q+HG K G++ DV V + L++ Y + G MP
Sbjct: 145 FVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVR 204
Query: 356 ------------------SDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397
+A LF E++ + N MI+ Y++ G +++AK +F +MP
Sbjct: 205 DAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMP 264
Query: 398 NKSLISWNSMIVGLSQNGSPIEALDLFCNM-NKLDLRMDKFSLASVISACANISSLELGE 456
+ ++SWN+M+ + G E L++F M + + D F+L SV+SACA++ SL GE
Sbjct: 265 VRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGE 324
Query: 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
V + G++ + ++T+LVD Y KCG I
Sbjct: 325 WVHVYIDKHGIEIEGFLATALVDMYSKCGKI 355
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 28/186 (15%)
Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
+ST +LS L +Q H K G+ D AS L+ + P
Sbjct: 36 SSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEP-------- 87
Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
T+ +S RI PN + NS+I + + +P AL +
Sbjct: 88 ----------KTVSYAHSILNRIGS--------PNG--FTHNSVIRAYANSSTPEVALTV 127
Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
F M + DK+S V+ ACA E G Q+ GL +D + +LV+ Y +
Sbjct: 128 FREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGR 187
Query: 484 CGFIKM 489
G+ ++
Sbjct: 188 SGYFEI 193
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 142/523 (27%), Positives = 232/523 (44%), Gaps = 105/523 (20%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
ARLLQ + +H +H + G+ T ++N L+ +Y R G A +F++M
Sbjct: 47 FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTY-LSNILINLYSRAGGMVYARKVFEKM 105
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLF-----NVMPQKNDF----------------SW 106
P RN SW+ M+ G E+SL +F N++ W
Sbjct: 106 PERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW 165
Query: 107 ---------------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYV 145
+LI + K G + AR +F+ +P ++ + W +MI V
Sbjct: 166 MVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCV 225
Query: 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
+ G + +++LF +L D V D +IL+TV+ AC+ L LE GKQIH+HIL GL+
Sbjct: 226 KMGRSYVSLQLFYQLMEDNVVP---DGYILSTVLSACSILPFLEGGKQIHAHILRYGLEM 282
Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
D+ SL+N+ LI Y CG++ A ++F+
Sbjct: 283 DA----SLMNV---------------------------LIDSYVKCGRVIAAHKLFNGMP 311
Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
+ + + W +++SGY N EA+ LF M + G+ D +S+L++C+SL L G Q
Sbjct: 312 NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ 371
Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
VH + K + +D V ++L+D Y+K +DA K+F D +L N MI YS G
Sbjct: 372 VHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLG- 430
Query: 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445
W EAL++F +M +R + S++ A
Sbjct: 431 ----------------TQWELH-----------EALNIFRDMRFRLIRPSLLTFVSLLRA 463
Query: 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488
A+++SL L +Q+ + GL+ D ++L+D Y C +K
Sbjct: 464 SASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLK 506
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/531 (23%), Positives = 230/531 (43%), Gaps = 84/531 (15%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L+ +L +C+ + GKQ+H H L+ G L + N L+ Y++CG A LF+ M
Sbjct: 252 LSTVLSACSILPFLEGGKQIHAHILRYG-LEMDASLMNVLIDSYVKCGRVIAAHKLFNGM 310
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--------------------------- 100
P +N SW ++ G+ + +++++LF M +
Sbjct: 311 PNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGT 370
Query: 101 ------------KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
+ + N LI +AK L AR +F+ + + +N+MI Y R G
Sbjct: 371 QVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLG 430
Query: 149 FA---REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205
EA+ +F+++ L+ + +++ A A L +L KQIH + GL+
Sbjct: 431 TQWELHEALNIFRDMRFRLI---RPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNL 487
Query: 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265
D GS+L+++ Y+NC + D+R VFD
Sbjct: 488 DIFAGSALIDV-------------------------------YSNCYCLKDSRLVFDEMK 516
Query: 266 DTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325
V+WNSM +GY+ +E+ EAL LF +++ + D T A++++A +L ++ G++
Sbjct: 517 VKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQE 576
Query: 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385
H K G+ + + +ALLD Y+K G P DA K F D + N++I+ Y++ G
Sbjct: 577 FHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGE 636
Query: 386 IEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441
+ A + M ++ + I++ ++ S G + L F M + + +
Sbjct: 637 GKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVC 696
Query: 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492
++S L ++ ++ I+ SL+ K G +++ E+
Sbjct: 697 MVSLLGRAGRLNKARELIEKMPT---KPAAIVWRSLLSGCAKAGNVELAEH 744
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 148/576 (25%), Positives = 233/576 (40%), Gaps = 142/576 (24%)
Query: 21 IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
+ K L H L++ +L + + LL Y G+ DA LFD +P+ + S N MI
Sbjct: 64 LRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMIS 123
Query: 81 GFMKLGHKEKSLQLFNVMP----QKNDFSWNMLISG------------------------ 112
G+ + E+SL+ F+ M + N+ S+ +IS
Sbjct: 124 GYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFF 183
Query: 113 -----------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
F+K + A +F D N WN++I +RN LF E+
Sbjct: 184 YEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEM- 242
Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
V + D++ ++V+ ACA L L +GK + + ++ KCG
Sbjct: 243 --CVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVI-------------------KCG 281
Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
D F +A++ YA CG M +A VF R + S V W M+SGY
Sbjct: 282 -------------AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTK 328
Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341
+N+ AL +F +MR +GV + T+ SV+SAC + QVH K G D V
Sbjct: 329 SNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSV 388
Query: 342 ASALLDTYSKRG--------------------------------MPSDACKLFSE----- 364
A+AL+ YSK G P A +LF+
Sbjct: 389 AAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEG 448
Query: 365 -----------LKVYDTILLNTMI--------------------TVYSSCGRIEDAKHIF 393
L V D + L + T+YS CG +E++ +F
Sbjct: 449 LRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLF 508
Query: 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453
+ +P K W SMI G ++ G EA+ LF M D+ +LA+V++ C++ SL
Sbjct: 509 QGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLP 568
Query: 454 LGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489
G+++ G+D + ++LV+ Y KCG +K+
Sbjct: 569 RGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKL 604
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/521 (25%), Positives = 228/521 (43%), Gaps = 114/521 (21%)
Query: 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68
+ +L +C + + GK + +K G + + + ++ +Y +CG+ +A+ +F +P
Sbjct: 255 SSVLAACASLEKLRFGKVVQARVIKCGAED--VFVCTAIVDLYAKCGHMAEAMEVFSRIP 312
Query: 69 RRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------------------------- 100
+ SW M+ G+ K +L++F M
Sbjct: 313 NPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQ 372
Query: 101 ------KNDFSWN-----MLISGFAKAGELKTARTLF---NDMPRRNAIAWNSMIHCYVR 146
K+ F + LIS ++K+G++ + +F +D+ R+N + N MI + +
Sbjct: 373 VHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSFSQ 430
Query: 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206
+ +A+RLF + L E L+ D F + +++ L L GKQ+H + L +GL D
Sbjct: 431 SKKPGKAIRLFTRM---LQEGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVLD 484
Query: 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266
+GSSL LY KC G + ++ ++F
Sbjct: 485 LTVGSSLFTLYSKC-------------------------------GSLEESYKLFQGIPF 513
Query: 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326
+ W SMISG+ EA+ LF +M +G D STLA+VL+ CSS L GK++
Sbjct: 514 KDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEI 573
Query: 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386
HG+ + G+ + + SAL + +YS CG +
Sbjct: 574 HGYTLRAGIDKGMDLGSAL-------------------------------VNMYSKCGSL 602
Query: 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446
+ A+ ++ +P +S +S+I G SQ+G + LF +M MD F+++S++ A
Sbjct: 603 KLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAA 662
Query: 447 ANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487
A LG QV A +T IGL ++ + +SL+ Y K G I
Sbjct: 663 ALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSI 703
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 191/444 (43%), Gaps = 78/444 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLF-- 64
+ ++ +C + Q+H K G L+S+ +A L+ MY + G+ + +F
Sbjct: 354 VTSVISACGRPSMVCEASQVHAWVFKSGFYLDSS--VAAALISMYSKSGDIDLSEQVFED 411
Query: 65 -DEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK----NDFSWNMLISG------- 112
D++ R+N N MI F + K+++LF M Q+ ++FS L+S
Sbjct: 412 LDDIQRQNIV--NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLG 469
Query: 113 -------------------------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147
++K G L+ + LF +P ++ W SMI +
Sbjct: 470 KQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEY 529
Query: 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS 207
G+ REA+ LF E+ D D LA V+ C+ +L GK+IH + L G+D
Sbjct: 530 GYLREAIGLFSEMLDDGTSP---DESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGM 586
Query: 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT 267
LGS+LVN+ Y+ CG + AR+V+DR +
Sbjct: 587 DLGSALVNM-------------------------------YSKCGSLKLARQVYDRLPEL 615
Query: 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327
V +S+ISGY + + LLF M +G D+ ++S+L A + G QVH
Sbjct: 616 DPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVH 675
Query: 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387
+ K+G+ + V S+LL YSK G D CK FS++ D I +I Y+ G+
Sbjct: 676 AYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKAN 735
Query: 388 DAKHIFRTMPNKSLISWNSMIVGL 411
+A ++ M K VG+
Sbjct: 736 EALQVYNLMKEKGFKPDKVTFVGV 759
Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/431 (23%), Positives = 177/431 (41%), Gaps = 103/431 (23%)
Query: 61 LLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELK 120
LL FD ++ SW + G + +LF+ +PQ + S N++ISG
Sbjct: 79 LLPFDVFLTKSLLSW------YSNSGSMADAAKLFDTIPQPDVVSCNIMISG-------- 124
Query: 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIG 180
Y ++ E++R F +++ + + +VI
Sbjct: 125 -----------------------YKQHRLFEESLRFFSKMH---FLGFEANEISYGSVIS 158
Query: 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFC 240
AC+ L A + + + H + G F V+ S+L++++ K N+
Sbjct: 159 ACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSK-----------NL-------- 199
Query: 241 LSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV 300
+ DA +VF + + WN++I+G + N LFH+M
Sbjct: 200 ------------RFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQ 247
Query: 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360
D+ T +SVL+AC+SL L GK V K G +DV V +A++D Y+K G ++A +
Sbjct: 248 KPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGA-EDVFVCTAIVDLYAKCGHMAEAME 306
Query: 361 LFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420
+FS + PN S++SW M+ G +++ A
Sbjct: 307 VFSRI-------------------------------PNPSVVSWTVMLSGYTKSNDAFSA 335
Query: 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480
L++F M + ++ ++ SVISAC S + QV A V G D ++ +L+
Sbjct: 336 LEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISM 395
Query: 481 YCKCGFIKMDE 491
Y K G I + E
Sbjct: 396 YSKSGDIDLSE 406
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 152/341 (44%), Gaps = 74/341 (21%)
Query: 21 IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80
+++GKQ+H + LK G++ L + + L +Y +CG+ ++ LF +P ++ W +MI
Sbjct: 466 LNLGKQVHGYTLKSGLVLD-LTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMIS 524
Query: 81 GFMKLGHKEKSLQLFNVM-------------------------PQKNDFSWNMLISG--- 112
GF + G+ +++ LF+ M P+ + L +G
Sbjct: 525 GFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDK 584
Query: 113 -----------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161
++K G LK AR +++ +P + ++ +S+I Y ++G ++ LF+++
Sbjct: 585 GMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDM- 643
Query: 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221
++ D+F +++++ A A G Q+H++I GL + +GSSL+ +Y K G
Sbjct: 644 --VMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFG 701
Query: 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281
DD C + F + + W ++I+ Y
Sbjct: 702 SI-------------DDCC------------------KAFSQINGPDLIAWTALIASYAQ 730
Query: 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322
+ + EAL +++ M+ G D T VLSACS G +E
Sbjct: 731 HGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEE 771
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 127/302 (42%), Gaps = 64/302 (21%)
Query: 185 LAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243
L L K + +H+L L FD L SL++ Y G A ++ + + +PD +
Sbjct: 61 LCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNI 120
Query: 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303
+ISGY R+F+ E+L F KM G +
Sbjct: 121 MISGYKQ-------HRLFE------------------------ESLRFFSKMHFLGFEAN 149
Query: 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363
+ SV+SACS+L + V H K+G +V SAL+D +SK
Sbjct: 150 EISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKN----------- 198
Query: 364 ELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423
R EDA +FR + ++ WN++I G +N + DL
Sbjct: 199 --------------------LRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDL 238
Query: 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
F M + D ++ +SV++ACA++ L G+ V ARV G + D + T++VD Y K
Sbjct: 239 FHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAK 297
Query: 484 CG 485
CG
Sbjct: 298 CG 299
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 138/335 (41%), Gaps = 65/335 (19%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
LA +L C++H S+ GK++H + L+ GI + + + + L+ MY +CG+ A ++D +
Sbjct: 554 LAAVLTVCSSHPSLPRGKEIHGYTLRAGI-DKGMDLGSALVNMYSKCGSLKLARQVYDRL 612
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFN 127
P + S +++I G+ + G + LF M + IS KA L +L
Sbjct: 613 PELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSL-- 670
Query: 128 DMPRRNAIAWNSMIHCYV-RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA 186
+ +H Y+ + G E + S L+ + + G+ D
Sbjct: 671 ----------GAQVHAYITKIGLCTE-----PSVGSSLL--------TMYSKFGSIDDCC 707
Query: 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLS 242
+ +NG D + ++L+ Y + G N A QV N+MKE PD
Sbjct: 708 --------KAFSQINGPDL--IAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFV 757
Query: 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302
++S ++ G + + S NSM+ Y E+ + + + R+G L
Sbjct: 758 GVLSACSHGGLVEE-----------SYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLR 806
Query: 303 DASTL-------------ASVLSACSSLGFLEHGK 324
+A + ++L+AC G +E GK
Sbjct: 807 EAESFINNMHIKPDALVWGTLLAACKIHGEVELGK 841
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/477 (27%), Positives = 201/477 (42%), Gaps = 108/477 (22%)
Query: 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMK 84
+ +H H +K + + + M+++C + A +F+ MP R+ +WNAM+ GF +
Sbjct: 72 EMVHAHLIKSPFWSDVF-VGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQ 130
Query: 85 LGHKEKSLQLFNVMP---------------QKNDFS------------------------ 105
GH +K+ LF M Q F
Sbjct: 131 SGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTV 190
Query: 106 WNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163
N IS + K G+L +A+ +F + R R ++WNSM Y G A +A L+ +
Sbjct: 191 ANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLM--- 247
Query: 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDF 223
L E + D + +C + L G+ IHSH + G D D
Sbjct: 248 LREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTD----------------QDI 291
Query: 224 NSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNN 283
+ N ++M + +D C AR +FD T + V W MISGY
Sbjct: 292 EAINTFISMYSKSEDTC---------------SARLLFDIMTSRTCVSWTVMISGYAEKG 336
Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
+ EAL LFH M ++G D TL S++S C G LE GK + A
Sbjct: 337 DMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARA------------- 383
Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILL-NTMITVYSSCGRIEDAKHIFRTMPNKSLI 402
D Y CK D +++ N +I +YS CG I +A+ IF P K+++
Sbjct: 384 ---DIY--------GCK-------RDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425
Query: 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459
+W +MI G + NG +EAL LF M LD + + + +V+ ACA+ SLE G + F
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYF 482
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/445 (25%), Positives = 192/445 (43%), Gaps = 80/445 (17%)
Query: 56 NPTDALLLFDEMPR----RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS 111
+P ++LLLF EM R N F++ + + +L ++ + K+ F W+ +
Sbjct: 32 DPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA-DVGCCEMVHAHLIKSPF-WSDVFV 89
Query: 112 G------FAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
G F K + A +F MP R+A WN+M+ + ++G +A LF+E+ +
Sbjct: 90 GTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMR---L 146
Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
+ D+ + T+I + + +L+ + +H+ + G+D + ++ ++ YGK
Sbjct: 147 NEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGK------ 200
Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT--DTSSVMWNSMISGYISNN 283
CG ++ A+ VF+ D + V WNSM Y
Sbjct: 201 -------------------------CGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFG 235
Query: 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343
E +A L+ M R D ST ++ ++C + L G+ +H HA +G D+
Sbjct: 236 EAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEA-- 293
Query: 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS 403
+NT I++YS A+ +F M +++ +S
Sbjct: 294 -----------------------------INTFISMYSKSEDTCSARLLFDIMTSRTCVS 324
Query: 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463
W MI G ++ G EAL LF M K + D +L S+IS C SLE G+ + AR
Sbjct: 325 WTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARAD 384
Query: 464 IIGLDSDQI-ISTSLVDFYCKCGFI 487
I G D + I +L+D Y KCG I
Sbjct: 385 IYGCKRDNVMICNALIDMYSKCGSI 409
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 77/355 (21%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR- 69
L+QS + S+ + + +H ++ G+ + + +AN + Y +CG+ A L+F+ + R
Sbjct: 159 LIQSASFEKSLKLLEAMHAVGIRLGV-DVQVTVANTWISTYGKCGDLDSAKLVFEAIDRG 217
Query: 70 -RNCFSWNAMIEGFMKLGHKEKSLQLFNVM------PQKNDF------------------ 104
R SWN+M + + G + L+ +M P + F
Sbjct: 218 DRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRL 277
Query: 105 ---------------SWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
+ N IS ++K+ + +AR LF+ M R ++W MI Y G
Sbjct: 278 IHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGD 337
Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
EA+ LF + + + D L ++I C +LE GK I + + G D+V+
Sbjct: 338 MDEALALFHAM---IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVM 394
Query: 210 -GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS 268
++L+++Y KCG + A + FD T + +
Sbjct: 395 ICNALIDMYSKCGSIHEARDI-------------------------------FDNTPEKT 423
Query: 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323
V W +MI+GY N EAL LF KM + T +VL AC+ G LE G
Sbjct: 424 VVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKG 478
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 144/350 (41%), Gaps = 67/350 (19%)
Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
AWN I V E++ LF+E+ E + F V ACA LA + + +H
Sbjct: 19 AWNLQIREAVNRNDPVESLLLFREMKRGGFEP---NNFTFPFVAKACARLADVGCCEMVH 75
Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
+H++ + D +G++ V+++ KC + A +V M E D +A++SG+ G +
Sbjct: 76 AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 135
Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
+A LF +MR N + D+ T+ +++ + S
Sbjct: 136 -------------------------------KAFSLFREMRLNEITPDSVTVMTLIQSAS 164
Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
L+ + +H ++GV V VA NT
Sbjct: 165 FEKSLKLLEAMHAVGIRLGVDVQVTVA-------------------------------NT 193
Query: 376 MITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433
I+ Y CG ++ AK +F + +++++SWNSM S G +A L+C M + + +
Sbjct: 194 WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 253
Query: 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483
D + ++ ++C N +L G + + +G D D + + Y K
Sbjct: 254 PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSK 303
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 122/280 (43%), Gaps = 48/280 (17%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
L SC ++ G+ +H H + G + + N + MY + + A LLFD M R
Sbjct: 262 LAASCQNPETLTQGRLIHSHAIHLGT-DQDIEAINTFISMYSKSEDTCSARLLFDIMTSR 320
Query: 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVM---PQKNDF-------------------SW-- 106
C SW MI G+ + G +++L LF+ M +K D W
Sbjct: 321 TCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWID 380
Query: 107 ----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150
N LI ++K G + AR +F++ P + + W +MI Y NG
Sbjct: 381 ARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIF 440
Query: 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210
EA++LF ++ DL + F+ V+ ACA +LE G + + HI+ + L
Sbjct: 441 LEALKLFSKM-IDLDYKPNHITFL--AVLQACAHSGSLEKGWE-YFHIMKQVYNISPGLD 496
Query: 211 --SSLVNLYGKCGDFNSANQVL-NMMKEPDDFCLSALISG 247
S +V+L G+ G A +++ NM +PD AL++
Sbjct: 497 HYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNA 536
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 33/229 (14%)
Query: 258 RRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316
RR++ R + SSV WN I ++ N+ E+LLLF +M+R G + T V AC+
Sbjct: 6 RRLY-RISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACAR 64
Query: 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTM 376
L + + VH H K DV V +A +D + K
Sbjct: 65 LADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVK------------------------- 99
Query: 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436
C ++ A +F MP + +WN+M+ G Q+G +A LF M ++ D
Sbjct: 100 ------CNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 153
Query: 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
++ ++I + + SL+L E + A +G+D ++ + + Y KCG
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCG 202
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 22/240 (9%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L L+ C S+ GK + G + I N L+ MY +CG+ +A +FD
Sbjct: 360 LLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNT 419
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSWNMLISGFAKAGELKTAR 123
P + +W MI G+ G ++L+LF+ M + N ++ ++ A +G L+
Sbjct: 420 PEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479
Query: 124 TLFNDMPRRNAIA-----WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178
F+ M + I+ ++ M+ R G EA+ L + +++ + DA I +
Sbjct: 480 EYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSA------KPDAGIWGAL 533
Query: 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV---NLYGKCGDFNSANQVLNMMKE 235
+ AC ++ +Q + + + + + V N+Y G ++ ++ ++MK+
Sbjct: 534 LNACKIHRNVKIAEQAAESL----FNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQ 589
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 142/529 (26%), Positives = 231/529 (43%), Gaps = 117/529 (22%)
Query: 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLP------IANRLLQMYMRCG 55
++ ++ A +L+ C ++ G+QLH K T P +A +L+ MY +CG
Sbjct: 77 NSPVEAFAYVLELCGKRRAVSQGRQLHSRIFK------TFPSFELDFLAGKLVFMYGKCG 130
Query: 56 NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMP---------------- 99
+ DA +FDEMP R F+WN MI ++ G +L L+ M
Sbjct: 131 SLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLK 190
Query: 100 -----------------------QKNDFSWNMLISGFAKAGELKTARTLFNDMPRR-NAI 135
F N L+S +AK +L AR LF+ + +A+
Sbjct: 191 ACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAV 250
Query: 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195
WNS++ Y +G + E + LF+E++ + +++ + + + AC + + GK+IH
Sbjct: 251 LWNSILSSYSTSGKSLETLELFREMH---MTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 196 SHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255
+ SVL SS + + +ALI+ Y CGKM
Sbjct: 308 A----------SVLKSS--------------------THSSELYVCNALIAMYTRCGKMP 337
Query: 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315
A R+ + + V WNS+I GY+ N EAL F M G D ++ S+++A
Sbjct: 338 QAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASG 397
Query: 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNT 375
L L G ++H + K G ++ V + L+D YSK C L
Sbjct: 398 RLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK-------CNL-------------- 436
Query: 376 MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435
T Y GR F M +K LISW ++I G +QN +EAL+LF ++ K + +D
Sbjct: 437 --TCY--MGR------AFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 486
Query: 436 KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484
+ L S++ A + + S+ + +++ + GL D +I LVD Y KC
Sbjct: 487 EMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKC 534
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 122/516 (23%), Positives = 221/516 (42%), Gaps = 108/516 (20%)
Query: 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR 70
LL++C I G +LH +K G +ST I N L+ MY + + + A LFD +
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLG-YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK 246
Query: 71 -NCFSWNAMIEGFMKLGHKEKSLQLFNVM----PQKNDFSW------------------- 106
+ WN+++ + G ++L+LF M P N ++
Sbjct: 247 GDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEI 306
Query: 107 -----------------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149
N LI+ + + G++ A + M + + WNS+I YV+N
Sbjct: 307 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 366
Query: 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL 209
+EA+ F ++ + + D + ++I A L+ L G ++H++++ +G D + +
Sbjct: 367 YKEALEFFSDM---IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 423
Query: 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269
G++L+++Y KC ++ Y R F R D
Sbjct: 424 GNTLIDMYSKCN-----------------------LTCYMG--------RAFLRMHDKDL 452
Query: 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329
+ W ++I+GY N+ EAL LF + + + D L S+L A S L + K++H H
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512
Query: 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389
+ G++D T++ N ++ VY C + A
Sbjct: 513 ILRKGLLD--------------------------------TVIQNELVDVYGKCRNMGYA 540
Query: 390 KHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449
+F ++ K ++SW SMI + NG+ EA++LF M + L D +L ++SA A++
Sbjct: 541 TRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASL 600
Query: 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485
S+L G ++ + G + I+ ++VD Y CG
Sbjct: 601 SALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCG 636
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 121/483 (25%), Positives = 207/483 (42%), Gaps = 105/483 (21%)
Query: 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN 71
L +C+ +GK++H LK +S L + N L+ MY RCG A + +M +
Sbjct: 291 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 350
Query: 72 CFSWNAMIEGFMK----------------LGHKEKSLQLFNVMPQKNDFS---------- 105
+WN++I+G+++ GHK + + +++ S
Sbjct: 351 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHA 410
Query: 106 ------W-------NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152
W N LI ++K F M ++ I+W ++I Y +N E
Sbjct: 411 YVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVE 470
Query: 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212
A+ LF+++ +R++ D IL +++ A + L ++ K+IH HIL GL D+V+ +
Sbjct: 471 ALELFRDVAK---KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNE 526
Query: 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW 272
LV++YGKC + GYA RVF+ V W
Sbjct: 527 LVDVYGKCRNM-----------------------GYAT--------RVFESIKGKDVVSW 555
Query: 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332
SMIS N ++EA+ LF +M G+ D+ L +LSA +SL L G+++H + +
Sbjct: 556 TSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLR 615
Query: 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392
G + +A A++D Y AC CG ++ AK +
Sbjct: 616 KGFCLEGSIAVAVVDMY--------AC-----------------------CGDLQSAKAV 644
Query: 393 FRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452
F + K L+ + SMI +G A++LF M ++ D S +++ AC++ L
Sbjct: 645 FDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLL 704
Query: 453 ELG 455
+ G
Sbjct: 705 DEG 707
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 65/325 (20%)
Query: 175 LATVIGACADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLNMM 233
A V+ C A+ G+Q+HS I F+ L LV +YGK
Sbjct: 83 FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGK-------------- 128
Query: 234 KEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293
CG ++DA +VFD D ++ WN+MI Y+SN E AL L+
Sbjct: 129 -----------------CGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYW 171
Query: 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353
MR GV S+ ++L AC+ L + G ++H K+G + +AL+ Y+K
Sbjct: 172 NMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKND 231
Query: 354 MPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLS 412
S A +LF + D +L N++++ YS+ G+
Sbjct: 232 DLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK--------------------------- 264
Query: 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQI 472
+E L+LF M+ + +++ S ++AC S +LG+++ A V S ++
Sbjct: 265 ----SLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320
Query: 473 -ISTSLVDFYCKCGFIKMDEYYLMQ 496
+ +L+ Y +CG + E L Q
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQ 345
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 136/339 (40%), Gaps = 73/339 (21%)
Query: 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83
G +LH + +K G +S L + N L+ MY +C F M ++ SW +I G+
Sbjct: 405 GMELHAYVIKHG-WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463
Query: 84 KLGHKEKSLQLFNVMPQK--------------------------------------NDFS 105
+ ++L+LF + +K +
Sbjct: 464 QNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVI 523
Query: 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165
N L+ + K + A +F + ++ ++W SMI NG EAV LF+ + +
Sbjct: 524 QNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM---VE 580
Query: 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225
L D+ L ++ A A L+AL G++IH ++L G + + ++V++Y
Sbjct: 581 TGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMY-------- 632
Query: 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285
A CG + A+ VFDR + + SMI+ Y +
Sbjct: 633 -----------------------ACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCG 669
Query: 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324
A+ LF KMR V D + ++L ACS G L+ G+
Sbjct: 670 KAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGR 708
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 48/282 (17%)
Query: 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM 67
L +L++ + S+ + K++H H L+KG+L++ I N L+ +Y +C N A +F+ +
Sbjct: 490 LGSILRASSVLKSMLIVKEIHCHILRKGLLDTV--IQNELVDVYGKCRNMGYATRVFESI 547
Query: 68 PRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN------------------------- 102
++ SW +MI G++ ++++LF M +
Sbjct: 548 KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGR 607
Query: 103 DFSWNMLISGF--------------AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148
+ +L GF A G+L++A+ +F+ + R+ + + SMI+ Y +G
Sbjct: 608 EIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHG 667
Query: 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV 208
+ AV LF ++ E + D ++ AC+ L+ G+ I+ + + +
Sbjct: 668 CGKAAVELFDKMRH---ENVSPDHISFLALLYACSHAGLLDEGRGFLK-IMEHEYELEPW 723
Query: 209 LGS--SLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISG 247
LV++ G+ A + + MMK EP AL++
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAA 765
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,104,276
Number of Sequences: 539616
Number of extensions: 6833523
Number of successful extensions: 27940
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 18821
Number of HSP's gapped (non-prelim): 2831
length of query: 496
length of database: 191,569,459
effective HSP length: 122
effective length of query: 374
effective length of database: 125,736,307
effective search space: 47025378818
effective search space used: 47025378818
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)