Query 010961
Match_columns 496
No_of_seqs 579 out of 2392
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 06:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9.2E-72 2E-76 566.2 50.4 486 2-496 83-650 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.8E-69 3.9E-74 549.4 46.1 481 1-494 183-680 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.1E-68 6.8E-73 530.1 52.1 489 3-496 368-905 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 7.1E-66 1.5E-70 513.3 51.9 453 40-495 369-871 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.9E-63 6.3E-68 492.4 42.8 441 43-495 89-552 (697)
6 PLN03081 pentatricopeptide (PP 100.0 8.3E-63 1.8E-67 489.2 44.1 463 2-472 120-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-32 4.7E-37 285.0 51.1 479 4-495 362-895 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-31 3.8E-36 278.2 51.2 480 4-495 328-861 (899)
9 PRK11447 cellulose synthase su 100.0 3.5E-24 7.6E-29 223.8 52.5 487 1-495 57-735 (1157)
10 PRK11447 cellulose synthase su 99.9 1.2E-22 2.6E-27 212.4 50.7 481 7-495 30-695 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 5.3E-20 1.1E-24 184.3 48.2 456 17-495 56-701 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 1E-20 2.2E-25 169.3 31.4 426 43-481 50-500 (966)
13 PRK11788 tetratricopeptide rep 99.9 1E-20 2.3E-25 176.9 31.1 291 143-472 44-354 (389)
14 PRK09782 bacteriophage N4 rece 99.9 4.9E-18 1.1E-22 170.3 49.7 473 5-495 181-735 (987)
15 KOG4626 O-linked N-acetylgluco 99.9 5.4E-20 1.2E-24 164.8 31.4 425 9-445 52-499 (966)
16 PRK11788 tetratricopeptide rep 99.9 7E-21 1.5E-25 178.1 27.1 288 47-340 41-354 (389)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-19 7E-24 175.4 39.5 378 75-464 130-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 8.4E-19 1.8E-23 172.5 37.6 379 44-430 130-571 (615)
19 PRK15174 Vi polysaccharide exp 99.9 4E-18 8.6E-23 167.2 38.7 341 82-430 15-381 (656)
20 KOG2002 TPR-containing nuclear 99.9 5.6E-18 1.2E-22 159.7 36.7 475 9-494 166-739 (1018)
21 PRK10049 pgaA outer membrane p 99.9 4.2E-17 9.2E-22 163.4 44.2 385 44-465 18-456 (765)
22 PRK14574 hmsH outer membrane p 99.9 1.5E-16 3.2E-21 156.5 45.5 411 47-465 40-513 (822)
23 PRK15174 Vi polysaccharide exp 99.9 4.6E-18 1E-22 166.7 34.9 320 6-334 43-382 (656)
24 PRK10049 pgaA outer membrane p 99.8 8.7E-17 1.9E-21 161.2 42.2 392 71-495 14-451 (765)
25 KOG2002 TPR-containing nuclear 99.8 1.5E-16 3.2E-21 150.2 36.3 452 19-478 250-758 (1018)
26 KOG4422 Uncharacterized conser 99.8 1E-15 2.2E-20 131.7 37.5 436 15-481 125-606 (625)
27 PRK14574 hmsH outer membrane p 99.8 1.3E-15 2.7E-20 150.0 42.7 406 81-494 43-507 (822)
28 KOG2003 TPR repeat-containing 99.8 4.8E-17 1E-21 140.9 26.7 442 4-451 200-709 (840)
29 KOG2076 RNA polymerase III tra 99.7 8.2E-13 1.8E-17 124.5 40.5 449 11-465 145-695 (895)
30 KOG0495 HAT repeat protein [RN 99.7 2.4E-12 5.3E-17 117.1 40.3 464 10-494 381-874 (913)
31 KOG2003 TPR repeat-containing 99.7 1.4E-13 3.1E-18 119.7 28.7 399 77-485 206-708 (840)
32 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.4E-17 123.6 36.0 426 2-430 169-695 (895)
33 PRK10747 putative protoheme IX 99.7 3.5E-13 7.6E-18 124.8 29.9 215 277-495 161-385 (398)
34 KOG0495 HAT repeat protein [RN 99.6 2.7E-11 6E-16 110.4 39.3 446 10-466 411-881 (913)
35 KOG1155 Anaphase-promoting com 99.6 1.1E-11 2.5E-16 108.3 35.2 360 110-482 171-551 (559)
36 KOG4422 Uncharacterized conser 99.6 4.2E-13 9E-18 115.9 25.8 332 134-485 116-482 (625)
37 KOG1915 Cell cycle control pro 99.6 5.6E-11 1.2E-15 104.4 39.1 440 16-463 84-583 (677)
38 PRK10747 putative protoheme IX 99.6 2.7E-12 5.8E-17 119.0 31.2 273 85-365 97-387 (398)
39 KOG1915 Cell cycle control pro 99.6 7.2E-11 1.6E-15 103.7 37.1 428 44-480 76-549 (677)
40 TIGR00540 hemY_coli hemY prote 99.6 2.3E-12 5E-17 120.2 29.8 217 276-495 160-394 (409)
41 KOG4318 Bicoid mRNA stability 99.6 9.7E-13 2.1E-17 123.6 25.5 203 1-221 21-285 (1088)
42 PF13429 TPR_15: Tetratricopep 99.6 3.8E-15 8.2E-20 131.9 9.4 250 212-495 13-272 (280)
43 TIGR00540 hemY_coli hemY prote 99.6 2E-12 4.4E-17 120.5 27.7 285 147-464 97-398 (409)
44 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.8E-19 128.5 11.4 252 179-461 15-273 (280)
45 KOG1126 DNA-binding cell divis 99.6 7.4E-13 1.6E-17 120.9 21.8 276 187-470 334-625 (638)
46 KOG1126 DNA-binding cell divis 99.6 6.1E-13 1.3E-17 121.5 20.0 272 56-334 334-621 (638)
47 KOG1173 Anaphase-promoting com 99.5 8.2E-11 1.8E-15 105.7 32.1 432 4-444 15-530 (611)
48 KOG0547 Translocase of outer m 99.5 7.1E-11 1.5E-15 104.1 30.0 402 75-496 118-562 (606)
49 COG2956 Predicted N-acetylgluc 99.5 1E-11 2.2E-16 103.7 23.5 113 86-202 49-171 (389)
50 COG2956 Predicted N-acetylgluc 99.5 7E-12 1.5E-16 104.6 22.2 276 55-333 49-347 (389)
51 KOG1155 Anaphase-promoting com 99.5 2.5E-10 5.4E-15 100.1 32.5 372 71-465 163-553 (559)
52 KOG2047 mRNA splicing factor [ 99.5 5.2E-09 1.1E-13 95.7 41.7 412 10-429 107-614 (835)
53 KOG3785 Uncharacterized conser 99.5 5.1E-10 1.1E-14 94.9 30.0 210 254-468 270-493 (557)
54 COG3071 HemY Uncharacterized e 99.5 2.8E-10 6E-15 98.2 28.9 275 185-465 97-390 (400)
55 KOG1173 Anaphase-promoting com 99.5 5.5E-10 1.2E-14 100.5 30.6 397 4-409 48-530 (611)
56 COG3071 HemY Uncharacterized e 99.5 2.8E-10 6E-15 98.2 27.2 275 116-430 97-390 (400)
57 KOG0547 Translocase of outer m 99.5 2.3E-10 5E-15 101.0 27.2 372 43-427 117-563 (606)
58 KOG4318 Bicoid mRNA stability 99.4 2E-11 4.3E-16 115.0 19.3 265 166-488 19-288 (1088)
59 KOG2376 Signal recognition par 99.4 5.5E-09 1.2E-13 94.7 33.4 432 12-461 19-516 (652)
60 KOG2047 mRNA splicing factor [ 99.4 1.2E-07 2.7E-12 87.0 41.2 291 73-366 103-452 (835)
61 KOG3785 Uncharacterized conser 99.4 3.1E-08 6.8E-13 84.3 33.9 414 13-440 30-498 (557)
62 PF13041 PPR_2: PPR repeat fam 99.4 1.9E-12 4.2E-17 80.2 6.5 50 399-448 1-50 (50)
63 PF13041 PPR_2: PPR repeat fam 99.3 4.2E-12 9.1E-17 78.7 6.7 50 267-316 1-50 (50)
64 KOG1156 N-terminal acetyltrans 99.3 6.1E-08 1.3E-12 89.1 35.1 439 17-492 19-503 (700)
65 TIGR02521 type_IV_pilW type IV 99.3 6.6E-10 1.4E-14 96.1 21.7 190 269-461 31-228 (234)
66 TIGR02521 type_IV_pilW type IV 99.3 9.9E-10 2.2E-14 94.9 22.4 188 304-494 31-226 (234)
67 PF12569 NARP1: NMDA receptor- 99.3 4.3E-08 9.3E-13 92.1 33.0 44 451-495 472-515 (517)
68 KOG2376 Signal recognition par 99.3 9E-08 1.9E-12 87.1 33.0 414 5-427 46-517 (652)
69 PRK12370 invasion protein regu 99.3 1.1E-09 2.4E-14 106.2 22.9 206 254-466 320-536 (553)
70 KOG1156 N-terminal acetyltrans 99.3 1.4E-07 3.1E-12 86.8 34.1 222 6-234 42-281 (700)
71 PF12569 NARP1: NMDA receptor- 99.2 7.1E-08 1.5E-12 90.7 31.9 121 308-429 198-333 (517)
72 KOG1840 Kinesin light chain [C 99.2 4.5E-09 9.8E-14 97.4 23.6 223 273-495 203-474 (508)
73 KOG1174 Anaphase-promoting com 99.2 5.3E-07 1.2E-11 78.6 33.9 279 147-430 209-500 (564)
74 PRK12370 invasion protein regu 99.2 6.1E-09 1.3E-13 101.2 24.9 238 186-431 275-536 (553)
75 KOG3616 Selective LIM binding 99.2 2.6E-07 5.7E-12 86.3 33.3 214 247-493 715-930 (1636)
76 KOG1129 TPR repeat-containing 99.2 1E-09 2.2E-14 92.1 15.5 220 242-465 227-458 (478)
77 KOG1129 TPR repeat-containing 99.2 1.2E-09 2.7E-14 91.6 15.1 217 211-429 227-457 (478)
78 KOG3617 WD40 and TPR repeat-co 99.2 1.2E-06 2.6E-11 83.1 35.3 180 17-232 812-992 (1416)
79 KOG1174 Anaphase-promoting com 99.2 2.3E-06 5.1E-11 74.7 34.3 295 168-466 190-501 (564)
80 KOG4162 Predicted calmodulin-b 99.1 1.5E-07 3.3E-12 88.3 28.7 57 43-99 325-384 (799)
81 KOG0985 Vesicle coat protein c 99.1 7.7E-07 1.7E-11 86.1 33.0 247 220-494 1088-1335(1666)
82 KOG1840 Kinesin light chain [C 99.1 4.2E-08 9.2E-13 91.1 23.5 244 136-428 201-477 (508)
83 KOG1127 TPR repeat-containing 99.1 2.3E-07 4.9E-12 89.6 28.1 456 29-492 480-1028(1238)
84 COG3063 PilF Tfp pilus assembl 99.1 1.8E-08 3.8E-13 80.8 17.3 183 45-233 39-233 (250)
85 COG3063 PilF Tfp pilus assembl 99.1 4.7E-08 1E-12 78.4 19.6 192 270-464 36-235 (250)
86 KOG3616 Selective LIM binding 99.1 4E-06 8.8E-11 78.7 34.8 309 10-364 594-933 (1636)
87 KOG4162 Predicted calmodulin-b 99.1 9.2E-07 2E-11 83.3 30.7 387 101-495 321-778 (799)
88 PRK11189 lipoprotein NlpI; Pro 99.0 1.2E-07 2.7E-12 84.2 22.9 206 272-481 67-281 (296)
89 KOG4340 Uncharacterized conser 99.0 3E-06 6.4E-11 70.8 27.9 187 106-301 13-210 (459)
90 KOG4340 Uncharacterized conser 99.0 1.1E-06 2.4E-11 73.3 25.1 181 75-265 13-205 (459)
91 PRK11189 lipoprotein NlpI; Pro 99.0 3.1E-07 6.7E-12 81.7 23.3 57 106-162 67-126 (296)
92 KOG0985 Vesicle coat protein c 99.0 2.7E-05 5.8E-10 75.9 36.5 304 82-421 1058-1374(1666)
93 KOG3617 WD40 and TPR repeat-co 99.0 1.2E-05 2.6E-10 76.6 33.0 416 4-489 725-1189(1416)
94 cd05804 StaR_like StaR_like; a 98.9 2.5E-06 5.4E-11 78.9 27.9 196 2-199 2-213 (355)
95 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3.1E-12 82.5 17.9 212 13-235 9-229 (290)
96 PF04733 Coatomer_E: Coatomer 98.9 2.3E-07 5E-12 81.2 17.9 45 250-296 114-158 (290)
97 cd05804 StaR_like StaR_like; a 98.8 8.6E-06 1.9E-10 75.3 28.3 194 38-235 3-214 (355)
98 PRK04841 transcriptional regul 98.8 1.9E-05 4.2E-10 82.8 33.5 351 81-431 350-761 (903)
99 KOG0624 dsRNA-activated protei 98.8 1.3E-05 2.8E-10 68.5 24.1 354 43-436 40-426 (504)
100 KOG1914 mRNA cleavage and poly 98.8 8E-05 1.7E-09 67.8 30.3 387 101-495 18-496 (656)
101 PRK04841 transcriptional regul 98.8 1.9E-05 4.1E-10 82.9 31.3 283 213-495 415-755 (903)
102 KOG0548 Molecular co-chaperone 98.7 3.3E-05 7.1E-10 70.2 26.3 98 14-113 11-114 (539)
103 KOG0624 dsRNA-activated protei 98.7 7E-05 1.5E-09 64.2 25.8 188 176-366 42-250 (504)
104 KOG3081 Vesicle coat complex C 98.7 1.1E-05 2.4E-10 66.5 20.1 105 380-486 147-256 (299)
105 KOG0548 Molecular co-chaperone 98.7 0.00014 3E-09 66.3 28.5 89 377-466 365-456 (539)
106 KOG1127 TPR repeat-containing 98.7 6.8E-05 1.5E-09 73.2 27.7 123 6-130 493-657 (1238)
107 PF12854 PPR_1: PPR repeat 98.6 4.2E-08 9E-13 54.3 3.5 32 431-462 2-33 (34)
108 KOG1070 rRNA processing protei 98.6 2.1E-05 4.5E-10 79.3 23.5 220 240-462 1460-1697(1710)
109 PF12854 PPR_1: PPR repeat 98.6 7.1E-08 1.5E-12 53.4 3.9 33 202-234 2-34 (34)
110 KOG1128 Uncharacterized conser 98.6 1.1E-05 2.5E-10 75.8 20.1 225 242-481 402-633 (777)
111 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.4E-10 66.5 17.8 151 308-460 70-226 (257)
112 KOG3081 Vesicle coat complex C 98.6 6.3E-05 1.4E-09 62.2 21.2 168 194-365 95-268 (299)
113 KOG1125 TPR repeat-containing 98.5 9E-06 1.9E-10 74.4 16.9 240 248-492 295-563 (579)
114 KOG1070 rRNA processing protei 98.5 5.8E-05 1.3E-09 76.2 23.3 219 267-488 1455-1688(1710)
115 COG5010 TadD Flp pilus assembl 98.5 3E-05 6.4E-10 64.1 17.3 151 343-495 70-226 (257)
116 KOG1128 Uncharacterized conser 98.5 9.9E-06 2.1E-10 76.2 16.1 213 204-429 395-615 (777)
117 TIGR03302 OM_YfiO outer membra 98.4 9.6E-06 2.1E-10 70.0 15.2 175 303-495 32-227 (235)
118 KOG1125 TPR repeat-containing 98.4 2.1E-05 4.6E-10 72.1 17.0 240 214-455 292-561 (579)
119 PLN02789 farnesyltranstransfer 98.4 0.00017 3.7E-09 64.3 22.6 125 357-483 126-267 (320)
120 PRK14720 transcript cleavage f 98.4 0.00019 4.1E-09 71.7 24.6 243 28-315 18-268 (906)
121 COG4783 Putative Zn-dependent 98.4 0.0005 1.1E-08 62.2 24.8 136 278-430 315-454 (484)
122 PLN02789 farnesyltranstransfer 98.4 4.5E-05 9.7E-10 67.9 18.3 198 15-219 47-267 (320)
123 PRK14720 transcript cleavage f 98.4 0.00023 5.1E-09 71.0 24.5 150 271-447 118-268 (906)
124 PRK15359 type III secretion sy 98.4 1.3E-05 2.9E-10 62.5 13.1 94 372-466 26-122 (144)
125 PRK10370 formate-dependent nit 98.4 3.6E-05 7.9E-10 63.6 16.1 118 317-436 52-178 (198)
126 PRK15359 type III secretion sy 98.4 1.7E-05 3.6E-10 62.0 13.3 106 259-366 14-119 (144)
127 TIGR03302 OM_YfiO outer membra 98.4 4.3E-05 9.3E-10 65.9 17.3 184 267-465 31-232 (235)
128 KOG2053 Mitochondrial inherita 98.4 0.0032 6.9E-08 61.4 37.0 464 16-493 20-563 (932)
129 KOG3060 Uncharacterized conser 98.3 0.00085 1.8E-08 55.3 21.6 185 147-334 25-221 (289)
130 KOG1914 mRNA cleavage and poly 98.3 0.0033 7.2E-08 57.8 34.3 144 285-430 347-501 (656)
131 TIGR00756 PPR pentatricopeptid 98.3 1.8E-06 3.9E-11 48.7 4.2 33 403-435 2-34 (35)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.7E-05 8E-10 69.9 14.4 121 109-234 175-295 (395)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.1E-05 8.8E-10 69.6 14.3 116 343-460 173-292 (395)
134 PRK10370 formate-dependent nit 98.2 0.00015 3.3E-09 60.0 16.6 112 252-365 53-170 (198)
135 PRK15179 Vi polysaccharide bio 98.2 0.00015 3.3E-09 71.5 19.1 132 334-466 81-218 (694)
136 COG4783 Putative Zn-dependent 98.2 0.00085 1.8E-08 60.8 21.7 139 140-298 312-454 (484)
137 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.2E-11 47.6 4.6 34 270-303 1-34 (35)
138 KOG2041 WD40 repeat protein [G 98.2 0.006 1.3E-07 57.9 28.6 53 208-265 853-905 (1189)
139 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.8E-11 47.3 4.1 33 402-434 2-34 (34)
140 PF13812 PPR_3: Pentatricopept 98.1 5.8E-06 1.3E-10 46.2 4.5 33 270-302 2-34 (34)
141 KOG2053 Mitochondrial inherita 98.1 0.013 2.7E-07 57.5 35.0 429 52-495 20-531 (932)
142 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0068 1.5E-07 54.0 26.1 82 211-294 181-262 (319)
143 KOG3060 Uncharacterized conser 98.1 0.0021 4.5E-08 53.1 19.6 122 273-396 56-180 (289)
144 PF14938 SNAP: Soluble NSF att 98.0 0.00064 1.4E-08 60.1 17.8 157 43-200 37-224 (282)
145 PRK15179 Vi polysaccharide bio 98.0 0.00084 1.8E-08 66.4 19.7 175 300-482 82-266 (694)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00048 1E-08 54.0 14.7 121 137-262 15-142 (145)
147 TIGR02552 LcrH_SycD type III s 98.0 0.00012 2.5E-09 56.9 11.1 90 375-465 22-114 (135)
148 TIGR02552 LcrH_SycD type III s 98.0 0.00018 3.8E-09 55.9 11.5 95 342-438 20-120 (135)
149 KOG2041 WD40 repeat protein [G 98.0 0.0079 1.7E-07 57.1 23.4 204 70-295 690-904 (1189)
150 PF09976 TPR_21: Tetratricopep 97.9 0.00085 1.8E-08 52.6 15.1 91 272-364 15-110 (145)
151 PF14938 SNAP: Soluble NSF att 97.9 0.0013 2.9E-08 58.1 17.9 104 271-374 157-272 (282)
152 PF01535 PPR: PPR repeat; Int 97.9 2.1E-05 4.7E-10 42.7 3.3 29 403-431 2-30 (31)
153 PF04840 Vps16_C: Vps16, C-ter 97.8 0.02 4.3E-07 51.1 27.1 101 346-458 184-284 (319)
154 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.8E-10 42.0 3.6 30 271-300 2-31 (31)
155 PF08579 RPM2: Mitochondrial r 97.8 0.00055 1.2E-08 48.8 9.9 81 271-351 27-116 (120)
156 PF08579 RPM2: Mitochondrial r 97.7 0.00076 1.7E-08 48.1 10.3 81 136-219 27-116 (120)
157 PF07079 DUF1347: Protein of u 97.7 0.033 7.1E-07 50.4 31.3 217 273-495 265-519 (549)
158 PRK10866 outer membrane biogen 97.7 0.01 2.3E-07 50.9 19.4 64 136-204 34-101 (243)
159 PF10037 MRP-S27: Mitochondria 97.7 0.00049 1.1E-08 63.0 11.4 115 370-484 66-186 (429)
160 PRK15363 pathogenicity island 97.7 0.00089 1.9E-08 51.7 10.9 107 358-465 22-132 (157)
161 cd00189 TPR Tetratricopeptide 97.7 0.00048 1E-08 49.3 9.2 88 375-463 5-95 (100)
162 PF06239 ECSIT: Evolutionarily 97.7 0.00057 1.2E-08 55.3 9.7 89 398-486 44-153 (228)
163 PF12895 Apc3: Anaphase-promot 97.6 5.6E-05 1.2E-09 52.8 3.6 80 414-495 2-82 (84)
164 PF05843 Suf: Suppressor of fo 97.6 0.0022 4.8E-08 56.5 14.2 136 306-444 3-148 (280)
165 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.3E-08 60.9 12.3 113 240-352 68-186 (429)
166 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0013 2.7E-08 49.6 10.8 64 137-201 42-105 (119)
167 PRK02603 photosystem I assembl 97.6 0.00079 1.7E-08 54.6 9.9 84 39-122 33-125 (172)
168 cd00189 TPR Tetratricopeptide 97.6 0.00075 1.6E-08 48.3 8.9 90 404-495 3-92 (100)
169 PF12895 Apc3: Anaphase-promot 97.6 0.00047 1E-08 48.1 7.4 19 345-363 31-49 (84)
170 PRK15363 pathogenicity island 97.5 0.003 6.5E-08 48.8 11.8 91 340-430 36-132 (157)
171 KOG2796 Uncharacterized conser 97.5 0.0049 1.1E-07 51.3 13.6 96 271-366 179-279 (366)
172 PF07079 DUF1347: Protein of u 97.5 0.067 1.4E-06 48.6 30.5 129 16-146 17-179 (549)
173 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0016 3.4E-08 49.1 10.4 97 371-467 3-107 (119)
174 PF06239 ECSIT: Evolutionarily 97.5 0.0015 3.3E-08 52.9 10.3 96 259-354 35-153 (228)
175 PRK02603 photosystem I assembl 97.4 0.0053 1.1E-07 49.8 13.2 84 271-355 37-122 (172)
176 PF05843 Suf: Suppressor of fo 97.4 0.0057 1.2E-07 53.9 13.7 125 173-298 2-136 (280)
177 CHL00033 ycf3 photosystem I as 97.4 0.0014 3.1E-08 52.9 9.1 57 43-99 37-99 (168)
178 PRK10866 outer membrane biogen 97.4 0.071 1.5E-06 45.8 19.6 54 408-461 182-237 (243)
179 PLN03088 SGT1, suppressor of 97.3 0.0018 4E-08 59.2 10.4 95 80-179 10-110 (356)
180 PF12688 TPR_5: Tetratrico pep 97.3 0.014 3E-07 43.5 13.1 106 275-380 7-116 (120)
181 KOG1538 Uncharacterized conser 97.3 0.055 1.2E-06 51.2 19.4 203 176-390 602-824 (1081)
182 KOG0553 TPR repeat-containing 97.3 0.0015 3.3E-08 55.4 8.7 96 81-181 90-191 (304)
183 KOG1130 Predicted G-alpha GTPa 97.3 0.0031 6.8E-08 55.9 10.8 123 175-297 198-343 (639)
184 CHL00033 ycf3 photosystem I as 97.3 0.0086 1.9E-07 48.4 12.8 63 271-333 37-101 (168)
185 KOG1130 Predicted G-alpha GTPa 97.3 0.0038 8.3E-08 55.3 10.7 126 270-395 196-340 (639)
186 PLN03088 SGT1, suppressor of 97.3 0.004 8.6E-08 57.0 11.5 85 346-430 9-99 (356)
187 KOG1538 Uncharacterized conser 97.2 0.017 3.7E-07 54.5 14.9 101 171-298 746-846 (1081)
188 COG4700 Uncharacterized protei 97.2 0.068 1.5E-06 42.3 15.9 68 168-235 85-152 (251)
189 KOG0553 TPR repeat-containing 97.2 0.0031 6.6E-08 53.7 9.2 91 313-404 90-185 (304)
190 KOG2280 Vacuolar assembly/sort 97.2 0.27 6E-06 47.7 27.8 107 306-423 686-792 (829)
191 PF12688 TPR_5: Tetratrico pep 97.1 0.01 2.2E-07 44.2 10.4 100 310-409 7-114 (120)
192 COG4700 Uncharacterized protei 97.1 0.083 1.8E-06 41.8 15.5 66 301-366 86-151 (251)
193 KOG2280 Vacuolar assembly/sort 97.1 0.31 6.8E-06 47.3 27.5 107 372-493 686-792 (829)
194 KOG0550 Molecular chaperone (D 97.1 0.2 4.4E-06 45.0 21.2 88 278-366 258-348 (486)
195 PF14559 TPR_19: Tetratricopep 97.0 0.0018 4E-08 42.9 5.4 51 17-69 3-53 (68)
196 COG3898 Uncharacterized membra 97.0 0.22 4.8E-06 44.4 28.8 300 20-334 68-393 (531)
197 PF13414 TPR_11: TPR repeat; P 97.0 0.0034 7.3E-08 41.8 6.5 64 400-464 2-66 (69)
198 PRK10153 DNA-binding transcrip 97.0 0.033 7.3E-07 53.5 15.4 65 400-466 419-483 (517)
199 PF14559 TPR_19: Tetratricopep 97.0 0.0051 1.1E-07 40.7 7.1 48 186-234 5-52 (68)
200 PF13432 TPR_16: Tetratricopep 96.9 0.0046 9.9E-08 40.5 6.6 58 407-465 3-60 (65)
201 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.3 6.5E-06 44.5 22.5 135 306-443 399-542 (660)
202 PF09205 DUF1955: Domain of un 96.9 0.074 1.6E-06 39.4 12.8 134 185-336 15-152 (161)
203 PRK10153 DNA-binding transcrip 96.9 0.031 6.7E-07 53.7 14.3 139 299-440 332-490 (517)
204 KOG2796 Uncharacterized conser 96.9 0.14 3.1E-06 43.0 15.9 134 173-308 178-323 (366)
205 PF13525 YfiO: Outer membrane 96.9 0.085 1.8E-06 44.1 15.0 61 140-202 11-72 (203)
206 KOG1920 IkappaB kinase complex 96.8 0.68 1.5E-05 47.7 23.0 48 382-429 977-1027(1265)
207 PF13525 YfiO: Outer membrane 96.8 0.18 3.8E-06 42.2 16.5 48 443-490 148-197 (203)
208 PF13414 TPR_11: TPR repeat; P 96.8 0.011 2.5E-07 39.1 7.5 62 134-200 3-66 (69)
209 PF03704 BTAD: Bacterial trans 96.7 0.017 3.8E-07 45.3 9.4 72 403-475 64-140 (146)
210 PF13432 TPR_16: Tetratricopep 96.7 0.013 2.8E-07 38.3 7.2 54 142-200 5-59 (65)
211 PF13281 DUF4071: Domain of un 96.6 0.16 3.5E-06 45.9 15.5 131 282-430 195-334 (374)
212 PF13281 DUF4071: Domain of un 96.6 0.2 4.3E-06 45.4 16.0 91 106-199 144-253 (374)
213 PRK10803 tol-pal system protei 96.6 0.03 6.5E-07 48.5 10.4 86 381-466 154-247 (263)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.63 1.4E-05 42.5 31.5 118 370-491 397-522 (660)
215 COG4235 Cytochrome c biogenesi 96.5 0.087 1.9E-06 45.4 12.5 95 336-430 153-256 (287)
216 KOG2114 Vacuolar assembly/sort 96.5 0.83 1.8E-05 45.2 20.1 49 344-392 710-758 (933)
217 COG3898 Uncharacterized membra 96.5 0.62 1.3E-05 41.8 26.7 284 8-302 85-396 (531)
218 PF13371 TPR_9: Tetratricopept 96.4 0.016 3.6E-07 38.9 6.7 57 409-466 3-59 (73)
219 KOG2114 Vacuolar assembly/sort 96.4 1.1 2.4E-05 44.4 24.7 176 106-295 337-516 (933)
220 PRK10803 tol-pal system protei 96.4 0.045 9.8E-07 47.4 10.7 94 106-201 146-246 (263)
221 KOG0550 Molecular chaperone (D 96.4 0.71 1.5E-05 41.7 22.0 257 13-298 57-350 (486)
222 KOG3941 Intermediate in Toll s 96.4 0.039 8.4E-07 46.7 9.4 88 399-486 65-173 (406)
223 PF04053 Coatomer_WDAD: Coatom 96.3 0.26 5.6E-06 46.4 15.8 159 277-461 269-427 (443)
224 COG4235 Cytochrome c biogenesi 96.3 0.068 1.5E-06 46.0 10.9 98 133-235 155-255 (287)
225 smart00299 CLH Clathrin heavy 96.3 0.24 5.1E-06 38.5 13.2 128 6-145 8-136 (140)
226 PRK15331 chaperone protein Sic 96.2 0.051 1.1E-06 42.4 8.8 90 375-465 42-134 (165)
227 PF04053 Coatomer_WDAD: Coatom 96.2 0.35 7.5E-06 45.6 16.0 134 73-234 296-429 (443)
228 PF13424 TPR_12: Tetratricopep 96.2 0.0078 1.7E-07 41.2 4.0 58 438-495 7-70 (78)
229 KOG1585 Protein required for f 96.2 0.61 1.3E-05 38.9 16.5 87 373-460 153-251 (308)
230 PF12921 ATP13: Mitochondrial 96.1 0.096 2.1E-06 39.5 9.6 51 432-482 48-99 (126)
231 PF13424 TPR_12: Tetratricopep 96.1 0.046 9.9E-07 37.3 7.4 64 135-199 6-73 (78)
232 KOG3941 Intermediate in Toll s 96.0 0.091 2E-06 44.5 9.8 99 267-365 65-185 (406)
233 PF03704 BTAD: Bacterial trans 95.9 0.071 1.5E-06 41.8 8.8 69 137-209 65-138 (146)
234 PF09205 DUF1955: Domain of un 95.9 0.51 1.1E-05 35.2 14.8 138 316-468 14-152 (161)
235 KOG2066 Vacuolar assembly/sort 95.7 2.4 5.2E-05 41.9 24.7 168 48-238 363-536 (846)
236 PF13371 TPR_9: Tetratricopept 95.7 0.067 1.5E-06 35.9 6.9 55 143-202 4-59 (73)
237 PF10300 DUF3808: Protein of u 95.7 2.1 4.6E-05 41.1 19.6 83 148-235 247-333 (468)
238 PRK15331 chaperone protein Sic 95.7 0.31 6.7E-06 38.2 10.9 78 352-429 50-133 (165)
239 KOG1258 mRNA processing protei 95.6 2.2 4.8E-05 40.8 27.0 92 339-430 297-395 (577)
240 KOG1920 IkappaB kinase complex 95.6 1.4 3.1E-05 45.5 17.8 149 117-292 894-1049(1265)
241 PF12921 ATP13: Mitochondrial 95.4 0.23 4.9E-06 37.5 9.4 99 103-220 2-101 (126)
242 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.16 3.4E-06 46.8 9.5 97 367-467 72-176 (453)
243 PF07035 Mic1: Colon cancer-as 95.3 1.1 2.5E-05 35.4 14.4 48 289-340 14-61 (167)
244 PRK09687 putative lyase; Provi 95.3 2 4.3E-05 37.9 26.9 90 206-296 141-232 (280)
245 KOG1258 mRNA processing protei 95.2 3 6.4E-05 39.9 29.4 176 237-415 296-489 (577)
246 PF10300 DUF3808: Protein of u 95.2 0.57 1.2E-05 44.9 13.4 167 25-200 177-375 (468)
247 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.3 6.5E-06 45.1 10.7 61 102-162 74-140 (453)
248 PF00637 Clathrin: Region in C 95.0 0.077 1.7E-06 41.4 6.1 131 8-149 10-140 (143)
249 COG4649 Uncharacterized protei 94.8 0.52 1.1E-05 37.0 9.6 118 113-235 68-195 (221)
250 KOG1585 Protein required for f 94.8 2.2 4.7E-05 35.9 13.6 19 140-158 97-115 (308)
251 KOG1941 Acetylcholine receptor 94.7 0.33 7.2E-06 42.9 9.5 118 178-295 128-272 (518)
252 KOG0543 FKBP-type peptidyl-pro 94.7 0.35 7.7E-06 43.5 9.8 98 80-182 216-334 (397)
253 PRK09687 putative lyase; Provi 94.6 3 6.5E-05 36.8 27.4 134 338-481 141-277 (280)
254 COG3118 Thioredoxin domain-con 94.5 3 6.4E-05 36.3 14.9 137 80-221 142-286 (304)
255 COG4105 ComL DNA uptake lipopr 94.4 2.8 6E-05 35.7 18.2 177 137-330 37-230 (254)
256 KOG2610 Uncharacterized conser 94.4 1.7 3.7E-05 38.3 12.8 48 349-396 185-235 (491)
257 PF07035 Mic1: Colon cancer-as 94.3 2.1 4.6E-05 34.0 14.2 49 155-210 15-63 (167)
258 smart00299 CLH Clathrin heavy 94.2 2 4.4E-05 33.2 14.9 20 47-66 13-32 (140)
259 KOG0543 FKBP-type peptidyl-pro 94.1 0.54 1.2E-05 42.4 9.6 86 345-430 214-320 (397)
260 COG3118 Thioredoxin domain-con 94.0 3.7 8.1E-05 35.7 14.9 139 315-454 145-290 (304)
261 COG2976 Uncharacterized protei 94.0 2.7 5.9E-05 34.0 13.6 86 346-431 96-189 (207)
262 KOG4555 TPR repeat-containing 93.9 0.88 1.9E-05 33.9 8.8 89 112-202 52-145 (175)
263 PF09613 HrpB1_HrpK: Bacterial 93.7 1.9 4.1E-05 33.8 10.8 21 410-430 53-73 (160)
264 PF13428 TPR_14: Tetratricopep 93.7 0.19 4.1E-06 29.6 4.4 27 404-430 4-30 (44)
265 KOG1941 Acetylcholine receptor 93.7 1.5 3.3E-05 39.0 11.3 214 249-462 17-272 (518)
266 COG1729 Uncharacterized protei 93.6 0.6 1.3E-05 39.9 8.7 94 105-201 144-244 (262)
267 PF10602 RPN7: 26S proteasome 93.6 0.8 1.7E-05 37.1 9.2 61 403-463 38-100 (177)
268 COG3629 DnrI DNA-binding trans 93.5 0.95 2.1E-05 39.3 9.9 70 372-441 155-232 (280)
269 PF08631 SPO22: Meiosis protei 93.5 5.1 0.00011 35.4 21.6 156 340-495 85-270 (278)
270 PF13170 DUF4003: Protein of u 93.5 3 6.5E-05 37.0 13.3 122 322-445 80-226 (297)
271 COG4649 Uncharacterized protei 93.5 1.9 4.1E-05 34.0 10.3 53 412-464 143-195 (221)
272 PF13428 TPR_14: Tetratricopep 93.4 0.35 7.5E-06 28.4 5.2 41 437-478 2-42 (44)
273 PF00637 Clathrin: Region in C 93.2 0.35 7.6E-06 37.7 6.5 85 310-397 13-97 (143)
274 COG4105 ComL DNA uptake lipopr 93.2 4.9 0.00011 34.2 19.2 172 277-464 42-232 (254)
275 PF04184 ST7: ST7 protein; In 93.1 3.7 8.1E-05 38.5 13.4 60 138-199 263-322 (539)
276 PRK11906 transcriptional regul 93.1 3 6.5E-05 38.9 12.9 138 319-459 273-430 (458)
277 PF08631 SPO22: Meiosis protei 92.9 6.3 0.00014 34.9 19.2 19 145-163 4-22 (278)
278 COG1729 Uncharacterized protei 92.7 1.2 2.7E-05 38.0 9.3 84 250-333 153-244 (262)
279 COG0457 NrfG FOG: TPR repeat [ 92.6 5.6 0.00012 33.6 21.5 212 251-465 36-265 (291)
280 PF13176 TPR_7: Tetratricopept 92.6 0.32 6.9E-06 27.1 4.0 26 136-161 1-26 (36)
281 PF10345 Cohesin_load: Cohesin 92.6 12 0.00027 37.5 33.7 162 72-234 59-252 (608)
282 KOG4555 TPR repeat-containing 92.5 1.4 3.1E-05 32.8 8.0 88 379-466 52-145 (175)
283 KOG2610 Uncharacterized conser 92.4 5.2 0.00011 35.4 12.6 144 147-294 116-272 (491)
284 PF13431 TPR_17: Tetratricopep 92.2 0.29 6.3E-06 26.8 3.4 32 28-61 2-33 (34)
285 PF13431 TPR_17: Tetratricopep 92.1 0.27 5.9E-06 26.9 3.3 31 460-491 3-33 (34)
286 PF09613 HrpB1_HrpK: Bacterial 91.9 4.9 0.00011 31.6 10.9 48 115-162 22-72 (160)
287 PF13176 TPR_7: Tetratricopept 91.9 0.4 8.6E-06 26.7 3.8 24 404-427 2-25 (36)
288 KOG0276 Vesicle coat complex C 91.7 3.3 7.2E-05 39.6 11.4 98 115-232 649-746 (794)
289 COG4785 NlpI Lipoprotein NlpI, 91.7 6.8 0.00015 32.4 11.7 28 209-236 239-266 (297)
290 KOG4570 Uncharacterized conser 91.5 2.7 5.9E-05 36.7 9.8 52 415-466 114-165 (418)
291 KOG2066 Vacuolar assembly/sort 91.5 16 0.00036 36.4 27.0 171 77-269 361-536 (846)
292 KOG0890 Protein kinase of the 91.3 32 0.00069 39.4 25.2 304 177-496 1388-1727(2382)
293 PF00515 TPR_1: Tetratricopept 91.2 0.47 1E-05 25.8 3.7 27 136-162 3-29 (34)
294 PF04097 Nic96: Nup93/Nic96; 90.4 21 0.00046 35.8 17.8 87 376-462 420-531 (613)
295 PF07721 TPR_4: Tetratricopept 90.2 0.53 1.2E-05 23.8 3.0 24 473-496 3-26 (26)
296 PF10602 RPN7: 26S proteasome 90.1 3.4 7.4E-05 33.5 9.1 61 136-199 38-100 (177)
297 PF13512 TPR_18: Tetratricopep 89.6 8 0.00017 29.8 11.1 67 248-314 20-92 (142)
298 PF13170 DUF4003: Protein of u 88.9 17 0.00036 32.5 15.8 133 188-346 78-224 (297)
299 PF11207 DUF2989: Protein of u 88.9 6.7 0.00015 32.1 9.6 74 417-491 122-198 (203)
300 PF02259 FAT: FAT domain; Int 88.8 19 0.00041 33.1 22.8 62 236-297 144-212 (352)
301 KOG0276 Vesicle coat complex C 88.8 7 0.00015 37.6 10.9 101 348-461 646-746 (794)
302 PF07719 TPR_2: Tetratricopept 88.7 0.96 2.1E-05 24.4 3.7 27 136-162 3-29 (34)
303 PF04184 ST7: ST7 protein; In 88.5 23 0.00049 33.6 17.2 54 376-429 265-323 (539)
304 PF13512 TPR_18: Tetratricopep 88.4 9.8 0.00021 29.3 12.1 59 143-203 19-78 (142)
305 COG3629 DnrI DNA-binding trans 88.3 6.6 0.00014 34.3 10.0 75 271-346 155-234 (280)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 88.3 4.7 0.0001 28.3 7.2 63 284-347 22-84 (103)
307 TIGR02508 type_III_yscG type I 88.3 7.2 0.00016 27.6 9.5 81 344-440 26-106 (115)
308 COG2976 Uncharacterized protei 88.2 13 0.00028 30.3 11.2 83 80-162 97-187 (207)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 87.6 4.9 0.00011 28.3 6.9 59 419-479 25-84 (103)
310 COG1747 Uncharacterized N-term 86.9 29 0.00062 33.0 17.6 50 284-333 184-234 (711)
311 PF00515 TPR_1: Tetratricopept 86.7 1.6 3.4E-05 23.6 3.7 27 403-429 3-29 (34)
312 KOG2063 Vacuolar assembly/sort 85.9 47 0.001 34.5 23.9 57 44-100 310-374 (877)
313 PF02284 COX5A: Cytochrome c o 85.8 6.3 0.00014 28.1 6.8 60 287-347 28-87 (108)
314 PF13181 TPR_8: Tetratricopept 85.4 1.9 4E-05 23.3 3.6 27 136-162 3-29 (34)
315 KOG0890 Protein kinase of the 85.4 79 0.0017 36.6 23.0 156 77-244 1388-1552(2382)
316 PF02284 COX5A: Cytochrome c o 85.0 6.8 0.00015 27.9 6.7 61 419-480 28-88 (108)
317 PF11207 DUF2989: Protein of u 84.7 5.8 0.00013 32.5 7.2 72 286-358 123-197 (203)
318 PF04190 DUF410: Protein of un 84.7 26 0.00057 30.6 14.2 103 250-363 2-114 (260)
319 PRK11906 transcriptional regul 84.6 36 0.00078 32.1 17.8 129 135-266 252-400 (458)
320 PF07719 TPR_2: Tetratricopept 84.5 2.3 5E-05 22.8 3.7 26 404-429 4-29 (34)
321 PF13374 TPR_10: Tetratricopep 84.1 2.6 5.5E-05 24.0 4.0 28 135-162 3-30 (42)
322 TIGR03504 FimV_Cterm FimV C-te 84.1 3 6.6E-05 24.5 4.1 24 442-465 5-28 (44)
323 PF14669 Asp_Glu_race_2: Putat 83.5 22 0.00048 28.8 14.5 56 441-496 137-206 (233)
324 PF13374 TPR_10: Tetratricopep 83.5 2.5 5.5E-05 24.0 3.8 28 402-429 3-30 (42)
325 PF04097 Nic96: Nup93/Nic96; 83.0 55 0.0012 33.0 22.5 87 213-299 264-357 (613)
326 PF07163 Pex26: Pex26 protein; 83.0 13 0.00029 32.1 8.9 54 408-463 90-145 (309)
327 COG1747 Uncharacterized N-term 82.9 45 0.00097 31.8 14.7 166 43-215 68-247 (711)
328 PRK11619 lytic murein transgly 82.9 57 0.0012 33.0 39.5 118 43-163 36-158 (644)
329 TIGR02561 HrpB1_HrpK type III 82.8 20 0.00044 27.8 10.8 47 352-398 23-72 (153)
330 cd08819 CARD_MDA5_2 Caspase ac 82.1 10 0.00022 26.2 6.4 66 191-258 21-86 (88)
331 TIGR02508 type_III_yscG type I 81.6 16 0.00036 25.9 9.3 50 111-162 47-96 (115)
332 COG4785 NlpI Lipoprotein NlpI, 81.3 30 0.00066 28.8 15.4 29 270-298 238-266 (297)
333 COG0457 NrfG FOG: TPR repeat [ 81.1 31 0.00068 28.8 24.2 159 271-430 97-265 (291)
334 PF02259 FAT: FAT domain; Int 80.5 47 0.001 30.5 22.4 62 337-398 144-212 (352)
335 KOG1464 COP9 signalosome, subu 80.1 38 0.00083 29.2 14.5 149 148-296 41-218 (440)
336 COG4455 ImpE Protein of avirul 80.0 9.9 0.00022 31.5 6.9 55 179-234 8-62 (273)
337 KOG4570 Uncharacterized conser 80.0 43 0.00093 29.7 11.1 53 282-334 113-165 (418)
338 PRK13800 putative oxidoreducta 79.1 95 0.0021 33.1 26.4 252 62-332 625-880 (897)
339 COG4455 ImpE Protein of avirul 78.9 18 0.00039 30.1 8.0 74 372-445 3-81 (273)
340 PF10345 Cohesin_load: Cohesin 78.9 76 0.0017 32.0 26.6 187 133-331 29-252 (608)
341 KOG4648 Uncharacterized conser 78.5 11 0.00024 33.5 7.3 83 80-162 105-193 (536)
342 cd08819 CARD_MDA5_2 Caspase ac 78.4 10 0.00022 26.1 5.5 34 116-150 49-82 (88)
343 PF13181 TPR_8: Tetratricopept 78.2 5.9 0.00013 21.2 3.9 27 403-429 3-29 (34)
344 COG3947 Response regulator con 77.3 50 0.0011 29.0 14.7 72 403-475 281-357 (361)
345 KOG4234 TPR repeat-containing 77.2 30 0.00065 28.4 8.7 88 277-366 103-195 (271)
346 KOG1550 Extracellular protein 76.9 82 0.0018 31.3 17.5 17 281-297 261-277 (552)
347 TIGR02561 HrpB1_HrpK type III 76.8 33 0.00072 26.7 12.7 49 185-235 23-72 (153)
348 PF07163 Pex26: Pex26 protein; 76.8 39 0.00085 29.4 9.7 87 141-230 90-181 (309)
349 PF13174 TPR_6: Tetratricopept 76.5 4.5 9.8E-05 21.4 3.1 24 139-162 5-28 (33)
350 KOG2062 26S proteasome regulat 76.1 92 0.002 31.4 23.8 37 123-162 202-238 (929)
351 PF13929 mRNA_stabil: mRNA sta 75.8 56 0.0012 28.8 20.8 86 399-484 200-291 (292)
352 KOG4234 TPR repeat-containing 74.8 27 0.00058 28.7 7.9 88 143-235 104-196 (271)
353 KOG2063 Vacuolar assembly/sort 74.8 1.1E+02 0.0025 31.9 16.4 28 135-162 505-532 (877)
354 COG2909 MalT ATP-dependent tra 74.6 1.1E+02 0.0024 31.6 26.3 217 278-494 424-682 (894)
355 TIGR03504 FimV_Cterm FimV C-te 74.6 9.7 0.00021 22.4 4.1 24 275-298 5-28 (44)
356 TIGR02270 conserved hypothetic 74.4 79 0.0017 29.9 24.0 229 79-328 45-276 (410)
357 KOG4648 Uncharacterized conser 74.0 23 0.00049 31.7 7.9 88 346-435 104-197 (536)
358 PF10579 Rapsyn_N: Rapsyn N-te 73.6 11 0.00024 25.4 4.7 47 413-459 18-66 (80)
359 smart00028 TPR Tetratricopepti 72.9 8 0.00017 19.6 3.6 27 136-162 3-29 (34)
360 PF11663 Toxin_YhaV: Toxin wit 71.8 5.8 0.00013 29.9 3.4 32 413-446 107-138 (140)
361 PF11846 DUF3366: Domain of un 70.5 14 0.00031 30.4 6.0 58 408-465 115-173 (193)
362 KOG2034 Vacuolar sorting prote 70.4 1.4E+02 0.003 30.9 24.2 55 108-162 363-417 (911)
363 PF10366 Vps39_1: Vacuolar sor 70.3 29 0.00062 25.4 6.7 27 403-429 41-67 (108)
364 PF08311 Mad3_BUB1_I: Mad3/BUB 70.0 27 0.00059 26.4 6.8 38 59-96 81-123 (126)
365 PF13934 ELYS: Nuclear pore co 69.7 64 0.0014 27.5 9.7 86 75-162 79-168 (226)
366 KOG1586 Protein required for f 69.6 70 0.0015 27.2 14.2 38 24-68 4-41 (288)
367 PF04190 DUF410: Protein of un 69.4 78 0.0017 27.7 18.5 28 369-396 89-116 (260)
368 KOG2582 COP9 signalosome, subu 68.8 93 0.002 28.4 13.8 56 411-466 287-346 (422)
369 PF07064 RIC1: RIC1; InterPro 68.7 80 0.0017 27.5 13.8 148 43-202 84-250 (258)
370 COG0735 Fur Fe2+/Zn2+ uptake r 68.4 39 0.00084 26.3 7.6 65 422-487 7-71 (145)
371 KOG1586 Protein required for f 67.8 76 0.0017 27.0 15.2 20 280-299 165-184 (288)
372 KOG4077 Cytochrome c oxidase, 66.7 52 0.0011 24.7 7.3 59 287-346 67-125 (149)
373 PF10579 Rapsyn_N: Rapsyn N-te 66.2 20 0.00044 24.2 4.7 46 448-493 18-65 (80)
374 KOG4077 Cytochrome c oxidase, 65.8 54 0.0012 24.6 7.1 59 420-479 68-126 (149)
375 PF14853 Fis1_TPR_C: Fis1 C-te 63.5 32 0.0007 21.2 5.2 35 139-178 6-40 (53)
376 PF13934 ELYS: Nuclear pore co 63.3 95 0.0021 26.5 10.4 102 45-148 80-186 (226)
377 smart00777 Mad3_BUB1_I Mad3/BU 63.3 20 0.00044 27.0 4.9 40 58-97 80-124 (125)
378 KOG2659 LisH motif-containing 62.6 53 0.0012 27.7 7.5 91 370-460 26-127 (228)
379 PF14689 SPOB_a: Sensor_kinase 62.5 31 0.00068 22.1 5.0 25 175-199 26-50 (62)
380 cd08326 CARD_CASP9 Caspase act 61.9 20 0.00044 24.7 4.3 49 101-149 28-76 (84)
381 PRK13800 putative oxidoreducta 61.0 2.4E+02 0.0051 30.3 30.0 262 90-372 622-886 (897)
382 PF10366 Vps39_1: Vacuolar sor 60.2 65 0.0014 23.6 8.5 29 269-297 39-67 (108)
383 PF11848 DUF3368: Domain of un 59.7 36 0.00078 20.4 5.0 30 414-443 15-44 (48)
384 PF14561 TPR_20: Tetratricopep 59.5 33 0.00073 24.0 5.2 51 38-88 19-74 (90)
385 COG3947 Response regulator con 58.5 1.3E+02 0.0029 26.6 14.4 60 271-331 281-340 (361)
386 PRK09462 fur ferric uptake reg 57.3 86 0.0019 24.5 7.8 35 451-485 32-66 (148)
387 PF11846 DUF3366: Domain of un 56.9 58 0.0013 26.8 7.2 34 168-201 140-173 (193)
388 PF11848 DUF3368: Domain of un 56.6 41 0.00089 20.1 5.2 31 281-311 14-44 (48)
389 KOG2034 Vacuolar sorting prote 56.5 2.5E+02 0.0055 29.2 22.2 255 78-355 364-644 (911)
390 PF13762 MNE1: Mitochondrial s 56.4 94 0.002 24.2 9.6 85 137-221 42-129 (145)
391 PF12862 Apc5: Anaphase-promot 56.2 69 0.0015 22.6 7.5 20 181-200 50-69 (94)
392 PRK10564 maltose regulon perip 55.6 28 0.0006 30.7 5.1 41 271-311 259-299 (303)
393 PF11663 Toxin_YhaV: Toxin wit 55.5 15 0.00032 27.8 2.9 33 280-314 106-138 (140)
394 PF10255 Paf67: RNA polymerase 55.2 1.1E+02 0.0024 28.7 9.1 85 78-162 81-192 (404)
395 KOG2471 TPR repeat-containing 54.8 1.2E+02 0.0025 29.1 9.0 290 147-447 30-380 (696)
396 cd08326 CARD_CASP9 Caspase act 54.6 37 0.00081 23.4 4.7 60 25-89 19-78 (84)
397 COG2909 MalT ATP-dependent tra 54.5 2.7E+02 0.0059 29.0 28.8 286 79-366 354-686 (894)
398 PRK10564 maltose regulon perip 53.7 29 0.00062 30.6 4.8 35 439-473 260-294 (303)
399 PRK11639 zinc uptake transcrip 53.3 1E+02 0.0022 24.9 7.7 38 414-451 38-75 (169)
400 KOG2396 HAT (Half-A-TPR) repea 52.6 2.2E+02 0.0048 27.4 30.1 231 254-490 298-549 (568)
401 COG0735 Fur Fe2+/Zn2+ uptake r 52.6 1.1E+02 0.0024 23.9 7.5 63 291-354 8-70 (145)
402 PF10255 Paf67: RNA polymerase 52.6 2.1E+02 0.0045 27.0 10.6 21 345-365 128-148 (404)
403 PF09670 Cas_Cas02710: CRISPR- 52.0 2.1E+02 0.0045 26.8 10.8 54 143-200 140-197 (379)
404 PF06552 TOM20_plant: Plant sp 52.0 1.2E+02 0.0025 24.7 7.5 42 417-466 96-137 (186)
405 PF04762 IKI3: IKI3 family; I 51.9 3.4E+02 0.0073 29.2 13.7 31 209-239 814-846 (928)
406 PF13762 MNE1: Mitochondrial s 51.9 1.1E+02 0.0024 23.8 12.2 102 197-320 27-131 (145)
407 KOG2300 Uncharacterized conser 50.8 2.4E+02 0.0051 27.2 31.8 415 11-437 13-522 (629)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 50.7 1.1E+02 0.0023 23.2 8.6 43 419-461 81-124 (126)
409 PF14689 SPOB_a: Sensor_kinase 50.6 32 0.00069 22.1 3.6 28 436-463 23-50 (62)
410 PRK11619 lytic murein transgly 50.2 3E+02 0.0064 28.1 39.4 309 74-398 36-374 (644)
411 PF02847 MA3: MA3 domain; Int 49.9 48 0.001 24.3 5.1 60 374-433 6-69 (113)
412 cd00280 TRFH Telomeric Repeat 49.0 1.1E+02 0.0024 24.9 6.9 63 385-450 84-157 (200)
413 PF02847 MA3: MA3 domain; Int 48.9 1E+02 0.0022 22.5 7.0 23 139-161 7-29 (113)
414 KOG4279 Serine/threonine prote 48.6 2.3E+02 0.005 28.9 10.2 28 173-200 202-229 (1226)
415 PRK10941 hypothetical protein; 48.4 1.9E+02 0.0042 25.4 10.1 80 403-483 183-263 (269)
416 PRK15180 Vi polysaccharide bio 48.0 2.6E+02 0.0056 26.8 10.8 52 314-366 333-384 (831)
417 PF13929 mRNA_stabil: mRNA sta 47.6 2E+02 0.0044 25.5 21.9 63 301-363 199-262 (292)
418 cd08332 CARD_CASP2 Caspase act 47.1 50 0.0011 23.2 4.4 46 103-148 34-79 (90)
419 PRK13184 pknD serine/threonine 46.3 4E+02 0.0087 28.6 25.4 93 77-171 480-587 (932)
420 PF12926 MOZART2: Mitotic-spin 46.1 99 0.0021 21.4 7.5 42 325-366 29-70 (88)
421 PF09477 Type_III_YscG: Bacter 45.2 1.2E+02 0.0026 22.1 10.2 78 19-100 20-97 (116)
422 PF14853 Fis1_TPR_C: Fis1 C-te 44.6 74 0.0016 19.6 4.5 27 408-436 8-34 (53)
423 PF08542 Rep_fac_C: Replicatio 44.6 1E+02 0.0022 21.3 6.3 20 415-434 18-37 (89)
424 PHA02875 ankyrin repeat protei 43.6 2.9E+02 0.0063 26.1 17.2 106 194-304 117-230 (413)
425 PF09454 Vps23_core: Vps23 cor 43.3 63 0.0014 21.0 4.1 49 399-448 6-54 (65)
426 KOG3364 Membrane protein invol 43.0 37 0.00081 25.9 3.4 65 38-103 30-104 (149)
427 PF03745 DUF309: Domain of unk 42.3 92 0.002 20.0 4.8 46 448-493 11-61 (62)
428 cd08323 CARD_APAF1 Caspase act 42.0 1.2E+02 0.0025 21.1 5.7 36 53-88 40-75 (86)
429 KOG0991 Replication factor C, 41.9 2.2E+02 0.0049 24.4 10.7 133 42-178 131-279 (333)
430 cd08332 CARD_CASP2 Caspase act 41.7 77 0.0017 22.2 4.7 27 222-248 49-75 (90)
431 cd00280 TRFH Telomeric Repeat 41.4 2E+02 0.0043 23.6 7.2 21 312-332 119-139 (200)
432 KOG4642 Chaperone-dependent E3 41.2 2.3E+02 0.0051 24.4 8.3 114 349-462 20-143 (284)
433 KOG1464 COP9 signalosome, subu 41.1 2.5E+02 0.0053 24.6 17.5 171 220-390 40-251 (440)
434 PF10475 DUF2450: Protein of u 41.0 2.7E+02 0.0058 24.9 9.5 24 301-324 194-217 (291)
435 PF12862 Apc5: Anaphase-promot 40.7 1.3E+02 0.0028 21.2 6.4 53 412-464 9-69 (94)
436 KOG0686 COP9 signalosome, subu 40.4 3.2E+02 0.0069 25.7 14.5 58 240-297 152-215 (466)
437 KOG0128 RNA-binding protein SA 40.4 4.4E+02 0.0096 27.3 26.2 92 72-163 113-219 (881)
438 PF12926 MOZART2: Mitotic-spin 40.1 1.3E+02 0.0027 20.9 7.4 42 193-234 29-70 (88)
439 COG5108 RPO41 Mitochondrial DN 40.1 3.4E+02 0.0075 27.3 9.9 70 212-281 33-115 (1117)
440 KOG4507 Uncharacterized conser 39.1 2.7E+02 0.0058 27.6 8.9 105 76-181 216-329 (886)
441 PF09454 Vps23_core: Vps23 cor 38.8 95 0.0021 20.2 4.4 48 267-315 6-53 (65)
442 PF02607 B12-binding_2: B12 bi 38.6 78 0.0017 21.2 4.4 38 412-449 12-49 (79)
443 cd07153 Fur_like Ferric uptake 38.4 92 0.002 22.9 5.1 48 407-454 6-53 (116)
444 PF01475 FUR: Ferric uptake re 38.1 93 0.002 23.1 5.1 43 443-485 14-56 (120)
445 PF11817 Foie-gras_1: Foie gra 38.1 1.8E+02 0.004 25.2 7.6 52 407-458 184-240 (247)
446 cd08323 CARD_APAF1 Caspase act 38.0 91 0.002 21.7 4.5 32 115-146 40-71 (86)
447 KOG4567 GTPase-activating prot 37.4 3.1E+02 0.0067 24.6 8.9 44 25-69 263-306 (370)
448 COG5108 RPO41 Mitochondrial DN 36.9 1.9E+02 0.004 29.0 7.7 92 107-200 32-131 (1117)
449 PF09986 DUF2225: Uncharacteri 36.4 2.6E+02 0.0057 23.6 9.1 91 380-470 87-199 (214)
450 PRK14962 DNA polymerase III su 36.1 4.2E+02 0.0091 25.8 11.8 61 413-473 255-321 (472)
451 PF02607 B12-binding_2: B12 bi 36.0 1.2E+02 0.0026 20.3 5.0 38 448-485 13-50 (79)
452 KOG3364 Membrane protein invol 35.9 2E+02 0.0044 22.1 7.3 67 399-466 30-101 (149)
453 PRK15180 Vi polysaccharide bio 35.4 4.1E+02 0.009 25.5 24.7 101 383-483 711-825 (831)
454 PF15297 CKAP2_C: Cytoskeleton 35.3 3.5E+02 0.0077 24.7 9.9 63 418-482 120-186 (353)
455 KOG3807 Predicted membrane pro 35.3 3.4E+02 0.0074 24.6 9.3 146 342-494 188-334 (556)
456 smart00777 Mad3_BUB1_I Mad3/BU 35.0 2E+02 0.0043 21.8 8.7 41 191-231 82-123 (125)
457 KOG4507 Uncharacterized conser 34.7 2.2E+02 0.0048 28.1 7.7 81 317-397 620-703 (886)
458 KOG4642 Chaperone-dependent E3 34.5 3E+02 0.0066 23.7 8.7 112 313-426 19-142 (284)
459 cd07153 Fur_like Ferric uptake 34.5 1.3E+02 0.0027 22.2 5.3 13 384-396 14-26 (116)
460 PRK11639 zinc uptake transcrip 34.4 2.4E+02 0.0051 22.7 7.1 35 451-485 40-74 (169)
461 COG4259 Uncharacterized protei 34.2 1.3E+02 0.0028 21.6 4.6 24 43-66 74-97 (121)
462 PF08542 Rep_fac_C: Replicatio 33.9 67 0.0014 22.2 3.5 49 3-54 3-51 (89)
463 PF00244 14-3-3: 14-3-3 protei 33.7 3.1E+02 0.0067 23.6 12.5 59 274-332 6-65 (236)
464 TIGR02270 conserved hypothetic 33.6 4.3E+02 0.0092 25.2 24.6 52 63-114 91-142 (410)
465 PF11817 Foie-gras_1: Foie gra 33.5 2.2E+02 0.0048 24.7 7.3 50 212-261 183-241 (247)
466 KOG0292 Vesicle coat complex C 33.5 3.9E+02 0.0085 28.0 9.5 93 381-473 1002-1121(1202)
467 PF09797 NatB_MDM20: N-acetylt 33.4 3.7E+02 0.008 25.0 9.3 120 138-262 184-310 (365)
468 PF11838 ERAP1_C: ERAP1-like C 33.3 3.6E+02 0.0079 24.3 16.2 128 320-448 146-287 (324)
469 KOG1550 Extracellular protein 33.3 5E+02 0.011 25.9 24.5 80 150-235 228-321 (552)
470 PF04910 Tcf25: Transcriptiona 33.3 4E+02 0.0087 24.8 16.0 58 407-464 109-167 (360)
471 PRK14962 DNA polymerase III su 32.5 4.8E+02 0.01 25.4 12.7 40 274-314 249-288 (472)
472 COG2256 MGS1 ATPase related to 32.2 4.4E+02 0.0095 24.9 14.1 52 267-318 244-298 (436)
473 PRK13342 recombination factor 31.7 4.6E+02 0.0099 24.9 18.9 45 272-316 230-277 (413)
474 PF10475 DUF2450: Protein of u 31.6 3.8E+02 0.0082 24.0 9.4 54 107-162 102-155 (291)
475 KOG0687 26S proteasome regulat 31.6 4E+02 0.0087 24.2 13.1 173 186-378 36-224 (393)
476 PRK12356 glutaminase; Reviewed 31.5 3.4E+02 0.0075 24.6 8.1 13 299-311 93-105 (319)
477 PRK09462 fur ferric uptake reg 31.4 2.5E+02 0.0055 21.9 7.9 61 294-355 7-68 (148)
478 KOG0376 Serine-threonine phosp 30.9 71 0.0015 30.2 4.0 97 82-183 14-116 (476)
479 PF09477 Type_III_YscG: Bacter 30.4 2.2E+02 0.0048 20.9 11.0 54 187-241 21-74 (116)
480 PF13646 HEAT_2: HEAT repeats; 30.1 1.8E+02 0.0039 19.7 7.7 16 171-186 44-59 (88)
481 KOG4521 Nuclear pore complex, 29.9 6.6E+02 0.014 27.5 10.5 195 139-364 925-1127(1480)
482 PF01475 FUR: Ferric uptake re 29.6 1.2E+02 0.0027 22.5 4.6 46 406-451 12-57 (120)
483 smart00544 MA3 Domain in DAP-5 29.3 2.3E+02 0.0049 20.7 9.3 58 374-431 6-67 (113)
484 COG5159 RPN6 26S proteasome re 29.3 4.1E+02 0.0089 23.6 18.1 32 140-174 9-40 (421)
485 PF06552 TOM20_plant: Plant sp 29.2 2.1E+02 0.0046 23.3 5.8 61 419-483 53-125 (186)
486 KOG4279 Serine/threonine prote 29.1 6.6E+02 0.014 26.0 13.9 172 240-430 203-395 (1226)
487 KOG0545 Aryl-hydrocarbon recep 28.8 3.9E+02 0.0084 23.2 8.6 88 111-202 186-294 (329)
488 KOG2582 COP9 signalosome, subu 28.6 4.8E+02 0.01 24.2 13.7 18 83-100 194-211 (422)
489 PF12796 Ank_2: Ankyrin repeat 28.6 1.9E+02 0.0042 19.6 6.4 80 380-470 4-86 (89)
490 PF09670 Cas_Cas02710: CRISPR- 28.5 5E+02 0.011 24.4 11.3 57 276-333 138-198 (379)
491 KOG1839 Uncharacterized protei 28.0 4E+02 0.0087 29.3 9.0 147 279-425 942-1123(1236)
492 KOG4567 GTPase-activating prot 27.9 4.5E+02 0.0098 23.7 9.9 42 325-366 264-305 (370)
493 cd01671 CARD Caspase activatio 27.9 1.6E+02 0.0036 19.7 4.6 26 57-82 43-68 (80)
494 PF04762 IKI3: IKI3 family; I 27.8 8E+02 0.017 26.5 12.6 17 179-195 701-717 (928)
495 cd08810 CARD_BCL10 Caspase act 27.4 1.5E+02 0.0033 20.5 4.1 43 103-146 30-72 (84)
496 PRK14700 recombination factor 27.3 4.6E+02 0.01 23.5 13.7 66 271-336 125-198 (300)
497 smart00386 HAT HAT (Half-A-TPR 26.9 98 0.0021 15.7 4.0 14 451-464 2-15 (33)
498 PF07575 Nucleopor_Nup85: Nup8 26.4 6.7E+02 0.015 25.2 19.8 22 108-129 153-174 (566)
499 PF07720 TPR_3: Tetratricopept 25.8 1.3E+02 0.0028 16.7 3.2 20 474-493 4-23 (36)
500 KOG2300 Uncharacterized conser 25.1 6.4E+02 0.014 24.5 32.1 402 47-460 13-509 (629)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.2e-72 Score=566.16 Aligned_cols=486 Identities=23% Similarity=0.415 Sum_probs=446.5
Q ss_pred CcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHH
Q 010961 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81 (496)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 81 (496)
.|+..+|..++++|...+.++.+.+++..+.+.+..++.. +++.++.+|++.|+++.|.++|+.|.+||..+||.+|.+
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR-LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 4788888999999999999999999999999999888887 999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CCh-----------------------------------hhHHHHHHHHHhcCChhHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ----KND-----------------------------------FSWNMLISGFAKAGELKTA 122 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~----~~~-----------------------------------~~~~~l~~~~~~~~~~~~a 122 (496)
|++.|++++|+++|++|.. ||. .+|++|+.+|++.|+++.|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 9999999999999999853 554 4557778888999999999
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 123 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
.++|++|+.+|..+||.+|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|+.+.+.+++..|.+.|
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~---~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE---LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998 6899999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC----CCCcchHHHHHHH
Q 010961 203 LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSSVMWNSMISG 278 (496)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~ 278 (496)
+.||..+|+.|+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875 4889999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhH
Q 010961 279 YISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999999999999999988754 4566777777777777777777
Q ss_pred HHHHHhcc---cCchhh-----------------------------------HHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 010961 359 CKLFSELK---VYDTIL-----------------------------------LNTMITVYSSCGRIEDAKHIFRTMPNKS 400 (496)
Q Consensus 359 ~~~~~~~~---~~~~~~-----------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (496)
..+|++|. .||..+ +++++.+|++.|++++|.++|+.+ .+|
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 77777775 455544 455667888889999999999999 899
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-HcCCCchHHHHHHHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVD 479 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 479 (496)
..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.+++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 6899999999999999
Q ss_pred HHHhcCChHHHHHhhhC
Q 010961 480 FYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 480 ~~~~~g~~~~A~~~~~e 496 (496)
+|+++|++++|.+++++
T Consensus 634 ~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 634 LLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHhCCCHHHHHHHHHH
Confidence 99999999999999874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-69 Score=549.40 Aligned_cols=481 Identities=24% Similarity=0.396 Sum_probs=454.6
Q ss_pred CCcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHH
Q 010961 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80 (496)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 80 (496)
+.||..||..++++|+..++++.+.+++..+.+.|+.|+.. +++.|+.+|++.|++++|.++|++|.+||..+||++|.
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD-VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 35788888888888888888888888888888888888888 89999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 152 (496)
+|++.|++++|+++|++|.+ ||..||+.++.+|++.|+++.|.+++..|.+ ||..+||.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999965 9999999999999999999999999999874 799999999999999999999
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.
T Consensus 342 A~~vf~~m~~-------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 342 AEKVFSRMET-------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred HHHHHhhCCC-------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999954 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010961 233 MKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308 (496)
Q Consensus 233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 308 (496)
+.+ ++..+|+.++.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 874 88999999999999999999999999999999999999999999999999999999999986 5999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHH
Q 010961 309 SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 309 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhCCC----CChhhHHHHHHHHHhCCChhhHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 389 AKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMN-KLDLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 389 a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
|.++|++|.+ ||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 9999999974 899999999999999999999999999999 7899999999999999999999999999999988
Q ss_pred HcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 464 IIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 464 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
.++||..+|++|+.+|...|+.+.+....
T Consensus 652 --~~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 652 --PITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred --CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 47899999999999998888888766543
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-68 Score=530.10 Aligned_cols=489 Identities=14% Similarity=0.176 Sum_probs=456.9
Q ss_pred cchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHH
Q 010961 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (496)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 82 (496)
++...|..++..|.+.|+++.|.++|++|.+.|+.+...-.++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46678889999999999999999999999999976555437888999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChhHHHHHHhhcC----CCCcccHHHHHHHHHHcCCHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMP----RRNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999975 899999999999999999999999999998 489999999999999999999999
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH--cCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV--NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
++|++|.. .|+.||..+|+.+|.+|++.|+++.|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 528 ~lf~~M~~---~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 528 GAYGIMRS---KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999 68999999999999999999999999999999987 67999999999999999999999999999999
Q ss_pred cCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010961 233 MKE----PDDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304 (496)
Q Consensus 233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 304 (496)
|.+ |+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 985 7789999999999999999999999999875 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc----cCchhhHHHHHHHH
Q 010961 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVY 380 (496)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~ 380 (496)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 79999999999999
Q ss_pred HhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHh----C-------------------CChhhHHHHHHHHHhCCCC
Q 010961 381 SSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLSQ----N-------------------GSPIEALDLFCNMNKLDLR 433 (496)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~~~~ 433 (496)
++.|+++.|.++|++|.+ ||..+|+.++..|.+ . +..+.|+.+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 999999999999999975 899999999865432 1 2246799999999999999
Q ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 434 MDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 434 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
||..||+.++.++.+.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..+++|
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 999999999988889999999999999998888899999999999998432 4689988864
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.1e-66 Score=513.29 Aligned_cols=453 Identities=15% Similarity=0.249 Sum_probs=427.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHhhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 010961 40 TLPIANRLLQMYMRCGNPTDALLLFDEMPRRN-----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114 (496)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 114 (496)
+.+.|..++..+++.|++++|+++|+.|.+++ ...++.++.+|.+.|..++|..+++.|..||..+|+.++.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 33388999999999999999999999998754 4566778888999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHH
Q 010961 115 KAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEY 190 (496)
Q Consensus 115 ~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 190 (496)
+.|+++.|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~---~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN---AGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999974 7999999999999999999999999999999 6899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC------CCChHHHHHHHHHHHhcCChhHHHHHHHhc
Q 010961 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK------EPDDFCLSALISGYANCGKMNDARRVFDRT 264 (496)
Q Consensus 191 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (496)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 489999999999999999999999999998
Q ss_pred CC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH
Q 010961 265 TD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 265 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 76 56789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHH
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----KSLISWNSMIVGLS 412 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 412 (496)
+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 79999999999999999999999999999864 89999999999999
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----c-------------------CchhhHHHHHHHHHHcCCCc
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----I-------------------SSLELGEQVFARVTIIGLDS 469 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~ 469 (496)
+.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+.|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999876542 1 12367999999999999999
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 470 DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
|..+|+.++.++++.+..+.+..+++
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHH
Confidence 99999999999999999999888775
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-63 Score=492.44 Aligned_cols=441 Identities=21% Similarity=0.330 Sum_probs=422.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHH
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR-----RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGF 113 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~ 113 (496)
.++.++..|.+.|++++|+++|+.|.. ||..+|+.++.+|.+.++++.+.+++..|.+ ||..+|+.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 789999999999999999999999863 6889999999999999999999999999864 9999999999999
Q ss_pred HhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHH
Q 010961 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
++.|++++|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+ .|+.|+..+|..++.+|+..|..+.+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE---DGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH---hCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 6899999999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC----CCCc
Q 010961 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT----DTSS 269 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~ 269 (496)
++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.++|..+|+.++.+|++.|++++|.++|++|. .||.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999884 5899
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
.+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+||.||.+|
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y 401 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 47889999999999
Q ss_pred HhcCChhhHHHHHHhcc----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCChhhH
Q 010961 350 SKRGMPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a 420 (496)
++.|+.++|.++|++|. .||..+|+.++.+|.+.|.+++|.++|+.|.+ |+..+|+.++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999998 79999999999999999999999999999963 8889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..|+++|++.|++++|.++++
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 9998876 5799999999999999999999999999999865 445 46799999999999999999999986
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.3e-63 Score=489.20 Aligned_cols=463 Identities=20% Similarity=0.310 Sum_probs=425.9
Q ss_pred CcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHH
Q 010961 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEG 81 (496)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 81 (496)
.||..+|..++.+|.+.++++.+.+++..+.+.|+.|+.. +++.|+.+|++.|++++|.++|++|.+||..+||.++.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 4788999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ----KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREA 153 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a 153 (496)
|++.|++++|+++|++|.+ ||..+|+.++.++++.|+.+.+.+++..+.+ +|..+|+.|+.+|++.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 9999999999999999965 8999999999999999999999999887763 7899999999999999999999
Q ss_pred HHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 154 VRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 154 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|
T Consensus 279 ~~vf~~m~~-------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 279 RCVFDGMPE-------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHhCCC-------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999954 7899999999999999999999999999999999999999999999999999999999999998
Q ss_pred C----CCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010961 234 K----EPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS 309 (496)
Q Consensus 234 ~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 309 (496)
. .||..+|+.++.+|++.|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 431 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 7 488999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHHH-cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-cCchhhHHHHHHHHHhcCCHH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACK-VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIE 387 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 387 (496)
++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++++.+|...|+++
T Consensus 432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999986 6999999999999999999999999999999997 889999999999999999999
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH-HHHHHH-------HHHHhcc----Cch
Q 010961 388 DAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASV-------ISACANI----SSL 452 (496)
Q Consensus 388 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l-------~~~~~~~----g~~ 452 (496)
.|..+++++.+ | +..+|..|+..|++.|++++|.++++.|++.|+++.+ .+|..+ +.+-..+ .-+
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHH
Confidence 99999998865 4 4679999999999999999999999999999986432 223211 1000001 113
Q ss_pred hhHHHHHHHHHHcCCCchHH
Q 010961 453 ELGEQVFARVTIIGLDSDQI 472 (496)
Q Consensus 453 ~~a~~~~~~~~~~~~~~~~~ 472 (496)
+...++..+|.+.|+.||..
T Consensus 592 ~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 592 QKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 45566777888999999854
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-32 Score=284.99 Aligned_cols=479 Identities=13% Similarity=0.030 Sum_probs=328.6
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--------------
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-------------- 69 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------- 69 (496)
++..+..+...+...|++++|..+++.+.+.. |.....+..+...+...|++++|++.|+.+.+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 34455556666666677777777776666554 33333555555566666666666665555433
Q ss_pred -----------------------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHH
Q 010961 70 -----------------------RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTAR 123 (496)
Q Consensus 70 -----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 123 (496)
++..+|..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 1334455555555555555555555555433 22334444555555555555555
Q ss_pred HHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 124 TLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 124 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
+.|+.+.+ .+..++..+...+.+.|+.++|...++++... .+.+...+..+...+...|+++.|..+++.+.+
T Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555542 23445555666666666666666666666552 223444555666666667777777777776665
Q ss_pred cCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHH
Q 010961 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNS 274 (496)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 274 (496)
.. +.+...+..+..++...|++++|...|+.+.+ .+...+..+...+...|++++|...|+++.+ .+..++..
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 43 23556667777777777777777777776653 3455666777777777777777777776654 23456777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...+..+.+.+ |+..++..+..++...|+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCC
Confidence 7777777777888877777777664 4566667777777788888888888888887764 333566677888888888
Q ss_pred hhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 010961 355 PSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 355 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 428 (496)
+++|.+.++.+. +.+...+..+...|...|++++|...|+++.+ ++..+++.+...+...|+ .+|+..++++.
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 888888888776 45667788888888889999999999888764 356778888888888888 77999999888
Q ss_pred hCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 429 KLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 429 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+.. +-++.++..+...+...|++++|...++.+.+.+.. ++.++..+..++.+.|+.++|.++++
T Consensus 831 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 831 KLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 752 445667888888899999999999999999987754 88999999999999999999999886
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-31 Score=278.19 Aligned_cols=480 Identities=11% Similarity=0.019 Sum_probs=285.9
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIE 80 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 80 (496)
++.....+...+...|+++.|...++.+.+.. |.....+..+...+.+.|++++|.+.|+++.+ .+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44556667788889999999999999998876 33444888999999999999999999998865 34566777788
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
.+...|++++|.+.++++.+ | +......++..+.+.|++++|.++++.+.. ++..+|..+...+...|++++|.
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 88888888888888877654 2 223344455555666666666666665543 23445555556666666666666
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc--------------
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC-------------- 220 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 220 (496)
+.|+++.+. .+.+...+..+...+...|+++.|.+.++.+.+.++. +..++..+...+.+.
T Consensus 486 ~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 486 EAFEKALSI----EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666555541 1122333444444555555555555555555443322 334444444444444
Q ss_pred --------------------CChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHH
Q 010961 221 --------------------GDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNS 274 (496)
Q Consensus 221 --------------------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ 274 (496)
|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+ .++..+..
T Consensus 561 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (899)
T TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL 640 (899)
T ss_pred HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 444444444444432 2334455555555555555555555554432 12334445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 5555555555555555555555432 2334455555555555555555555555555543 3344445555556666666
Q ss_pred hhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 355 PSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 355 ~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+++|.+.|+.+. .|+..++..++.++.+.|++++|.+.++++.+ .+...+..+...|...|++++|.++|+++.+
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 666666666554 33444555556666666666666666665543 2445566666666666777777777766666
Q ss_pred CCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 430 LDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 430 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.. +++...+..+...+...|+ .+|...++++.+... -++.++..+..++.+.|++++|.++++
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 53 4456666666666666666 556666666655432 244556666777777777777777664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.5e-24 Score=223.81 Aligned_cols=487 Identities=10% Similarity=0.006 Sum_probs=310.0
Q ss_pred CCc-chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHH--------------HHHHHHHHHhcCChHHHHHHhh
Q 010961 1 MDT-RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI--------------ANRLLQMYMRCGNPTDALLLFD 65 (496)
Q Consensus 1 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~A~~~~~ 65 (496)
++| |+..+..+++.+...|+.++|...++.+.+..+....... ...+.+.+...|++++|+..|+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 466 6677777788888889999999999988888743222100 1233456778889999998888
Q ss_pred hCCCCChhhH----HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc----
Q 010961 66 EMPRRNCFSW----NAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPRRNA---- 134 (496)
Q Consensus 66 ~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 134 (496)
.+.+.++... ..........|+.++|++.++++.+ | +...+..+...+...|+.++|++.++++.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 8775222111 1111112235778888888888776 3 345566777777777888888877776532100
Q ss_pred -------------------ccH----------------------------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 135 -------------------IAW----------------------------------NSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 135 -------------------~~~----------------------------------~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
..+ ......+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 011334556788888888888877
Q ss_pred HchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch-hHH------------HHHHHHHHhcCChhhHH
Q 010961 162 SDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS-VLG------------SSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 162 ~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~~~~~~a~ 227 (496)
+ ..| +...+..+..++.+.|++++|...|++..+....... ..+ ......+.+.|++++|.
T Consensus 297 ~-----~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 297 R-----ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred H-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 6 334 5667777777788888888888888887765443211 111 12234556777888888
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC-cchHH----------------------------
Q 010961 228 QVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWN---------------------------- 273 (496)
Q Consensus 228 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~---------------------------- 273 (496)
..|+++.+ .+...+..+...+...|++++|++.|+++.+ |+ ...+.
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 88877664 2344566677777778888888888777654 22 11221
Q ss_pred --------------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH
Q 010961 274 --------------SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339 (496)
Q Consensus 274 --------------~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 339 (496)
.+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++.+.+... .++
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCH
Confidence 12234456788888888888887753 33455666777778888888888888888776432 223
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhc-------------------------------------------ccCchhhHHHH
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSEL-------------------------------------------KVYDTILLNTM 376 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------------------------------------------~~~~~~~~~~l 376 (496)
..+..+...+...++.++|...++.+ .+.++..+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 22222222333344444444443332 23344455666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
...+.+.|++++|+..|+++.+ | +...+..++..|...|++++|++.++...+.. +.+..++..+..++...|+++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHH
Confidence 7777777888888887777664 3 45677777788888888888888888766541 234555666777777888888
Q ss_pred hHHHHHHHHHHcCCC--c---hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 454 LGEQVFARVTIIGLD--S---DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 454 ~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+|.++++.+...... | +..++..+...+.+.|+.++|.+.++
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888877664321 2 23456666777788888888887765
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.2e-22 Score=212.37 Aligned_cols=481 Identities=11% Similarity=0.064 Sum_probs=343.9
Q ss_pred hHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhH---------
Q 010961 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSW--------- 75 (496)
Q Consensus 7 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~--------- 75 (496)
.+...++.+...++.+.|.+.++.+.... |+...++..++..+.+.|+.++|.+.++++.+ |+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 35556677888999999999999998875 55566889999999999999999999999976 432221
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhH--HHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHH
Q 010961 76 --------NAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSW--NMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSM 140 (496)
Q Consensus 76 --------~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 140 (496)
..+...+.+.|++++|.+.|+++.+ |+.... ..........|+.++|++.++++.+ | +...+..+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2334567889999999999999887 322221 1112222346999999999999986 3 45678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhc---------------cCC--------------cCHHHH----------------
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVE---------------RLQ--------------CDAFIL---------------- 175 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~--------------p~~~~~---------------- 175 (496)
...+...|+.++|++.++++...... +.. |+...+
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999988552100 000 111000
Q ss_pred -----HHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCh---HHHH---
Q 010961 176 -----ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDD---FCLS--- 242 (496)
Q Consensus 176 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~--- 242 (496)
......+...|++++|...+++.++..+. +...+..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 01123456778999999999999987543 677888999999999999999999998774 332 1121
Q ss_pred ---------HHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010961 243 ---------ALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310 (496)
Q Consensus 243 ---------~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 310 (496)
.....+.+.|++++|...|+++.+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 223457789999999999998876 235577778899999999999999999988753 2223222222
Q ss_pred ------------------------------------------HHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 311 ------------------------------------------LSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 311 ------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...+...|++++|...++++.+.. +.++..+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 223445788888999898888764 3456677788888
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHH--------------------------------------------HHH
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMIT--------------------------------------------VYS 381 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~--------------------------------------------~~~ 381 (496)
|...|++++|...++++. +.++..+..+.. .+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999998876 223333222222 333
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
..|+.++|.++++.- ..+...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++|...++.
T Consensus 585 ~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555421 1234455667778888888888888888888763 44677888888888888888888888887
Q ss_pred HHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 462 VTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+... .+......+..++.+.|++++|.++++
T Consensus 663 ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 663 LPATAN-DSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 765432 245566677888888888888888775
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=5.3e-20 Score=184.27 Aligned_cols=456 Identities=11% Similarity=-0.001 Sum_probs=304.8
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHH
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQL 94 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 94 (496)
..|++++|...|+..++.. |++..++..|.+.|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4599999999999999987 44455899999999999999999999999876 4323333333222 889999999
Q ss_pred HhhCCC--C-ChhhHHHHHHH--------HHhcCChhHHHHHHhhcCCCC--cccHHHH-HHHHHHcCCHHHHHHHHHHH
Q 010961 95 FNVMPQ--K-NDFSWNMLISG--------FAKAGELKTARTLFNDMPRRN--AIAWNSM-IHCYVRNGFAREAVRLFKEL 160 (496)
Q Consensus 95 ~~~~~~--~-~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~~ 160 (496)
++++.. | +..++..+... |.+.++..++++ .+...|+ ..+.... ...|.+.|+|++|+++++++
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999976 4 34556556555 666666666666 3333343 4434444 89999999999999999999
Q ss_pred HHchhccCCcCHHHHHHHHHHHHc-cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC----
Q 010961 161 NSDLVERLQCDAFILATVIGACAD-LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---- 235 (496)
Q Consensus 161 ~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 235 (496)
.+. ...+..-...+..++.. .++ +.+..+++. .++-+......+...|.+.|+.++|.++++++..
T Consensus 209 ~k~----~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 209 RQQ----NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred Hhc----CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 983 22334445556566666 366 777777543 3335778888999999999999999999988862
Q ss_pred -CChHHHHHH------------------------------HHHH------------------------------------
Q 010961 236 -PDDFCLSAL------------------------------ISGY------------------------------------ 248 (496)
Q Consensus 236 -~~~~~~~~l------------------------------~~~~------------------------------------ 248 (496)
|+..+|... +..+
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 222111100 1111
Q ss_pred ---------------------------HhcCChhHHHHHHHhcCC-C---------------------------------
Q 010961 249 ---------------------------ANCGKMNDARRVFDRTTD-T--------------------------------- 267 (496)
Q Consensus 249 ---------------------------~~~~~~~~a~~~~~~~~~-~--------------------------------- 267 (496)
.+.|+.++|..+|+...+ +
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 234555566666554332 0
Q ss_pred ------------------------------------CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010961 268 ------------------------------------SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311 (496)
Q Consensus 268 ------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 311 (496)
+...|..+..++.. +++++|+..+.+.... .|+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 01112222222222 4445555555554443 34433333333
Q ss_pred HHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHH---HHHHHHHhcCCHHH
Q 010961 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLN---TMITVYSSCGRIED 388 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~ 388 (496)
..+...|++++|...++.+... +|+...+..+..++...|++++|...+++....++.... .+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 3445677777777777766443 233334455566677777777777777776633322222 22333344588888
Q ss_pred HHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 389 AKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 389 a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
|...+++..+ |+...|..+...+.+.|++++|...+++..... +.+...+..+..++...|++++|...++...+..
T Consensus 595 Al~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 595 ALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888888775 677778888888889999999999999888863 4456677888888888899999999999887754
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 467 LDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
. -++..+..+..++.+.|++++|.+.++
T Consensus 674 P-~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 674 P-DDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 366788888999999999999988775
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1e-20 Score=169.32 Aligned_cols=426 Identities=13% Similarity=0.090 Sum_probs=341.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNC---FSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 116 (496)
....|..-..+.|++.+|++.-+..-..|+ ...-.+-..+.+..+.+....--....+ .-..+|..+.+.+-..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 345677777788999999987776644222 2233344566677777776654444433 3457899999999999
Q ss_pred CChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHH-HHHHHHccchHHHHH
Q 010961 117 GELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT-VIGACADLAALEYGK 192 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~ 192 (496)
|++++|+..++.+.+ | .+..|..+..++...|+.+.|.+.|.+..+ +.|+..-..+ +-......|++++|.
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999875 3 567999999999999999999999999988 7787654444 334455678999999
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChhHHHHHHHhcCC--C
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD--T 267 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 267 (496)
..+.+.++.... -...|+.|...+...|+...|+..|++..+ |+ ...|-.|...|...+.+++|...+.+... |
T Consensus 205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 999988876543 456788899999999999999999999886 43 45788889999999999999999988665 3
Q ss_pred -CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHH
Q 010961 268 -SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASAL 345 (496)
Q Consensus 268 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (496)
....+..+...|..+|..+-|+..|++..+. .|+ ...|+.+..++-..|++.+|...+...+... +......+.|
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3567888888999999999999999999885 443 6789999999999999999999999998864 3446677889
Q ss_pred HHHHHhcCChhhHHHHHHhcccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhh
Q 010961 346 LDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~ 419 (496)
...|...|.+++|..+|.....-. ....+.|...|-+.|++++|+..+++..+ |+. .+|+.+...|-..|+.+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999999877333 44688899999999999999999999876 543 689999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH-HHHHHHHHHH
Q 010961 420 ALDLFCNMNKLDLRMD-KFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-IISTSLVDFY 481 (496)
Q Consensus 420 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 481 (496)
|++.+.+.... .|. ...++.|...|-.+|+..+|.+-++...+ ++||. ..+..++.++
T Consensus 441 A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 441 AIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 99999998875 564 56889999999999999999999998877 44553 3444444444
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=176.87 Aligned_cols=291 Identities=11% Similarity=0.039 Sum_probs=145.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc---hhHHHHHHHHHH
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFD---SVLGSSLVNLYG 218 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 218 (496)
.+...|++++|+..|+++.+ ..| +..++..+...+...|+++.|..+++.+...+..++ ..++..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLK-----VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34455666666666666655 223 233555555555666666666666665555332111 134455555666
Q ss_pred hcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC--------cchHHHHHHHHHhCCCHHH
Q 010961 219 KCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTS--------SVMWNSMISGYISNNEDTE 287 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ 287 (496)
..|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 66666666666665543 222333333444444444444444443332211 0122333444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV 367 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 367 (496)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~----------------------- 254 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK----------------------- 254 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH-----------------------
Confidence 555555544432 12233334444444444555555555544444322222233344
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 368 YDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
++.+|...|++++|...++++.+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..
T Consensus 255 --------l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 255 --------LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 44444444455555444444432 44444566666666667777777777666654 5666666666655
Q ss_pred Hhc---cCchhhHHHHHHHHHHcCCCchHH
Q 010961 446 CAN---ISSLELGEQVFARVTIIGLDSDQI 472 (496)
Q Consensus 446 ~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 472 (496)
+.. .|+.+++..+++.+.+.++.|++.
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 543 346666666677666655555554
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=4.9e-18 Score=170.28 Aligned_cols=473 Identities=12% Similarity=0.018 Sum_probs=313.0
Q ss_pred hhhHHHH-HhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHh-cCChHHHHHHhhhCCCCChhhHHHHHHHH
Q 010961 5 IDYLARL-LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR-CGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (496)
Q Consensus 5 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 82 (496)
+..+... .+.|...++.++|..++..+.+.++.. ......|..+|.. .++ +++..+++...+.++..+..+...+
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~--~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS--AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH
Confidence 4434444 566666776777777777777766322 2245556666665 255 6666665544445666666777777
Q ss_pred HhcCCHHHHHHHHhhCCC-----CChhhH------------------------------HHHHHHHHhcCChhHHHHHHh
Q 010961 83 MKLGHKEKSLQLFNVMPQ-----KNDFSW------------------------------NMLISGFAKAGELKTARTLFN 127 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~-----~~~~~~------------------------------~~l~~~~~~~~~~~~a~~~~~ 127 (496)
.+.|+.++|.++++++.. |...++ ..++..+.+.++++.++++..
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 777777777777766653 211111 112344445555555544422
Q ss_pred hcCCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc-C-C
Q 010961 128 DMPRRNAIAWNSMIHCYV--RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN-G-L 203 (496)
Q Consensus 128 ~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~ 203 (496)
....+. . ..++... ..+...++...+..|.+. .+-+......+--...+.|+.++|.++++..... + -
T Consensus 338 -~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~----~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 338 -TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQ----EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred -CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 111111 1 1222221 224555555555555552 1224444444555566788899999999888762 1 2
Q ss_pred CcchhHHHHHHHHHHhcCCh---hhHHHHHH-------------------------hcCC---C--ChHHHHHHHHHHHh
Q 010961 204 DFDSVLGSSLVNLYGKCGDF---NSANQVLN-------------------------MMKE---P--DDFCLSALISGYAN 250 (496)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~-------------------------~~~~---~--~~~~~~~l~~~~~~ 250 (496)
.++......++..|.+.+.. .++..+.. .... + +...|..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 22444555788888877663 33333211 1111 2 45667777777776
Q ss_pred cCChhHHHHHHHhcCCCCcchHHHH--HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHH
Q 010961 251 CGKMNDARRVFDRTTDTSSVMWNSM--ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328 (496)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 328 (496)
++.++|...+.+.....+..++.+ ...+...|++++|...|+++... +|+...+..+...+.+.|+.+.|...++
T Consensus 490 -~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred -CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888889998877655333334444 44446899999999999998664 4555556667778889999999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Chhh
Q 010961 329 HACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLIS 403 (496)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 403 (496)
...+.. +++...+..+.......|++++|...+++.. .|+...+..+...+.+.|++++|+..+++... | +...
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 998865 3333344444445556699999999999988 46778889999999999999999999999875 4 5567
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH-HHHHHHHHHHH
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ-IISTSLVDFYC 482 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 482 (496)
++.+...+...|+.++|+..+++..+.. +-+...+..+..++...|++++|...+++..+.. |+. .+.........
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHH
Confidence 8888999999999999999999998863 4467889999999999999999999999998754 443 56666677777
Q ss_pred hcCChHHHHHhhh
Q 010961 483 KCGFIKMDEYYLM 495 (496)
Q Consensus 483 ~~g~~~~A~~~~~ 495 (496)
+..+++.|.+-++
T Consensus 723 ~~~~~~~a~~~~~ 735 (987)
T PRK09782 723 QRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=5.4e-20 Score=164.75 Aligned_cols=425 Identities=14% Similarity=0.083 Sum_probs=260.7
Q ss_pred HHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhc
Q 010961 9 ARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKL 85 (496)
Q Consensus 9 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 85 (496)
..|.+..-+.|++++|.......-+.+. ...+....+-..+....+++.....-....+ ....+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC--CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3444555566666666665554444432 2221333334455555555554433333322 1345677777777777
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc--c-cHHHHHHHHHHcCCHHHHHHHHHH
Q 010961 86 GHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA--I-AWNSMIHCYVRNGFAREAVRLFKE 159 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~li~~~~~~~~~~~a~~~~~~ 159 (496)
|++++|+.+++.+.+ .....|..+..++...|+.+.|...|.+..+-|+ . ..+.+...+...|+..+|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 777777777777665 2345677777777777777777777776665332 2 223344445556777777777766
Q ss_pred HHHchhccCCcCH-HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC--CC
Q 010961 160 LNSDLVERLQCDA-FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK--EP 236 (496)
Q Consensus 160 ~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 236 (496)
..+ .+|.- ..|..|...+-.+|+...|.+-|++.++..+. -...|-.|...|...+.+++|...+.+.. +|
T Consensus 210 Ai~-----~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 210 AIE-----TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHh-----hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 665 44432 35556666666777777777777777665432 34466667777777777777777766654 24
Q ss_pred C-hHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC-cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010961 237 D-DFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312 (496)
Q Consensus 237 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 312 (496)
+ ...+..+...|...|..+.|+..+++..+ |+ +.+|+.|..++-..|+..+|.+.|.+..... +--....+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3 44566666667777777777777777665 22 4567777777777777777777777766642 223445666777
Q ss_pred HHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--Cc-hhhHHHHHHHHHhcCCHHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 389 (496)
.+...|.++.|..+|....+.. +.-...++.|...|-..|++++|+..|++... |+ ...|+.+...|-..|+.+.|
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 7777777777777777766642 22234566677777777777777777776662 22 33566667777777777777
Q ss_pred HHHHhhCCCCCh---hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 010961 390 KHIFRTMPNKSL---ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISA 445 (496)
Q Consensus 390 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 445 (496)
.+.+.+...-++ ..++.|...|-..|++.+|+.-++...+. +|| +..|..++.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 777777665333 35666777777777777777777776663 554 3344444444
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=7e-21 Score=178.06 Aligned_cols=288 Identities=15% Similarity=0.133 Sum_probs=235.3
Q ss_pred HHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------hhhHHHHHHHHHhc
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KN------DFSWNMLISGFAKA 116 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~------~~~~~~l~~~~~~~ 116 (496)
....+...|++++|+..|+++.+ | +..++..+...+...|++++|..+++.+.. |+ ...+..+...|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456788999999999999876 3 456788888899999999999999988876 22 24577888899999
Q ss_pred CChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-C---HHHHHHHHHHHHccchHH
Q 010961 117 GELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-D---AFILATVIGACADLAALE 189 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~---~~~~~~ll~~~~~~~~~~ 189 (496)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+. +..+ . ...+..+...+...|+++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL---GGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 999999999999876 35668899999999999999999999999873 2122 1 224556777888999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC--hHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD--DFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 190 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
.|...++++.+.... +...+..+...+.+.|++++|.++++++.+ |+ ..++..++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886533 456777888999999999999999999884 43 3457888999999999999999999876
Q ss_pred C--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---ccchhhHHHHHHHHHHcCCCchHH
Q 010961 266 D--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS---LGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 266 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5 66667788899999999999999999998875 6888899888877664 558999999999999988777766
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.2e-19 Score=175.45 Aligned_cols=378 Identities=12% Similarity=0.025 Sum_probs=183.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 149 (496)
+......+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++...+ | +..+|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44556667777888888888877665 6666777777777778888888877777664 2 34467777777888888
Q ss_pred HHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHH------------
Q 010961 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY------------ 217 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------ 217 (496)
+++|+..|...... .+. +......++...... .+........+.... +...+..+...+
T Consensus 210 ~~eA~~~~~~~~~~--~~~--~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 210 YADALLDLTASCII--DGF--RNEQSAQAVERLLKK----FAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHHHHHHHHh--CCC--ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhh
Confidence 88887777655442 111 111111111111111 111111111111110 111111111110
Q ss_pred ------------------------HhcCChhhHHHHHHhcCC-----C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCCC
Q 010961 218 ------------------------GKCGDFNSANQVLNMMKE-----P-DDFCLSALISGYANCGKMNDARRVFDRTTDT 267 (496)
Q Consensus 218 ------------------------~~~~~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (496)
...+++++|.+.|+...+ | ....|..+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 112345555555554432 1 1223444445555555555555555554432
Q ss_pred C---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH
Q 010961 268 S---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344 (496)
Q Consensus 268 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (496)
+ ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 1 2244444555555555555555555554432 2234444455555555555555555555555443 223344444
Q ss_pred HHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-h-------hHHHHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-I-------SWNSMIVGL 411 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~-------~~~~l~~~~ 411 (496)
+..++.+.|++++|+..|++.. +.++..++.+...+...|++++|++.|++... |+. . .++..+..+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 5555555555555555555444 23344455555555555555555555555432 110 0 011111122
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
...|++++|.+++++..... +.+...+..+...+...|++++|...+++..+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22355555555555554432 22233455555555555555555555555444
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=8.4e-19 Score=172.54 Aligned_cols=379 Identities=13% Similarity=0.004 Sum_probs=258.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGE 118 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 118 (496)
+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.+++..+ | +...+..+..++...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34555566666666666666666553 5555666666666666666666666666654 2 34456666666666666
Q ss_pred hhHHHHHHhhcCCC---------------------------------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchh
Q 010961 119 LKTARTLFNDMPRR---------------------------------NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV 165 (496)
Q Consensus 119 ~~~a~~~~~~~~~~---------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 165 (496)
+++|+..|...... +...+..+.. +....+......-+.+...
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 285 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--- 285 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhcccc---
Confidence 66666655443221 1111111111 1111000000000000000
Q ss_pred ccCCcCH-HHHHHHHHH---HHccchHHHHHHHHHHHHHcC-CCc-chhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC
Q 010961 166 ERLQCDA-FILATVIGA---CADLAALEYGKQIHSHILVNG-LDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD 237 (496)
Q Consensus 166 ~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 237 (496)
..|.. ..+..+... ....+++++|.+.++...+.+ ..| ....+..+...+...|++++|+..+++..+ |+
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11110 001111100 123467899999999999875 223 445778888899999999999999999875 44
Q ss_pred -hHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 238 -DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 238 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
...|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 55788888999999999999999998765 346788899999999999999999999998863 4456677778888
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--Cc-hhh-------HHHHHHHHHhc
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YD-TIL-------LNTMITVYSSC 383 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~-------~~~l~~~~~~~ 383 (496)
+.+.|++++|...++...+.. +.++..++.+..++...|++++|++.|++... |+ ... ++.....+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999998753 55678889999999999999999999998772 21 111 12222334457
Q ss_pred CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 384 GRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 384 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|++++|..++++..+ | +...+..+...+.+.|++++|++.|++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999998754 3 4457889999999999999999999998875
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4e-18 Score=167.15 Aligned_cols=341 Identities=12% Similarity=0.038 Sum_probs=236.8
Q ss_pred HHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~ 152 (496)
+.+..+++.-.-.|+...+ .+......++..+.+.|++++|..+++.... | +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 4566777777777776654 2233344556667788888888888887764 2 45566677777778888888
Q ss_pred HHHHHHHHHHchhccCCcC-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHH
Q 010961 153 AVRLFKELNSDLVERLQCD-AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
|++.|+++.. ..|+ ...+..+...+...|+++.|...++.+.+.... +...+..+...+...|++++|...++
T Consensus 95 A~~~l~~~l~-----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 95 VLQVVNKLLA-----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8888888877 4443 456666777788888888888888888876433 55677778888888888888888887
Q ss_pred hcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC----cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010961 232 MMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTDTS----SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305 (496)
Q Consensus 232 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 305 (496)
.+.. |+.......+..+...|++++|...++++.+.+ ...+..+...+...|++++|+..+++..+.. +.+..
T Consensus 169 ~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 6642 333222222334677788888888887765532 2234445567777888888888888877653 34556
Q ss_pred HHHHHHHHHhcccchhh----HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHH
Q 010961 306 TLASVLSACSSLGFLEH----GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMIT 378 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~ 378 (496)
.+..+...+...|++++ |...++.+.+.. +.+...+..+...+...|++++|...+++.. +.++..+..+..
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66667777777787775 677777777754 3456677777888888888888888887766 334556666777
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CChhh-HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 379 VYSSCGRIEDAKHIFRTMPN--KSLIS-WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
++.+.|++++|...|+++.. |+... +..+..++...|+.++|...|++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77788888888888777764 43322 333456677778888888888877765
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.6e-18 Score=159.66 Aligned_cols=475 Identities=15% Similarity=0.085 Sum_probs=250.8
Q ss_pred HHHHhhhhc--cCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHH---H
Q 010961 9 ARLLQSCNT--HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF---M 83 (496)
Q Consensus 9 ~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~---~ 83 (496)
..+.++|.. .+++..|..+|..++...+.-.+. ..-.+...+.+.|+.+.|+..|.+..+-|+...++++... .
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 344566553 578888888888877655433332 3334455556777888877777777653332222222111 1
Q ss_pred h---cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC------cccHHHHHHHHHHcCCHH
Q 010961 84 K---LGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN------AIAWNSMIHCYVRNGFAR 151 (496)
Q Consensus 84 ~---~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~ 151 (496)
. ...+..+..++..... .|+...+.|.+.|.-.|+++.+..+...+.... ..+|..+.++|-..|+++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 1 1123333333333322 334444444444444444444444444443211 123444444444445555
Q ss_pred HHHHHHHHHHHchhccCCcCHH--HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC----Chhh
Q 010961 152 EAVRLFKELNSDLVERLQCDAF--ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG----DFNS 225 (496)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~ 225 (496)
+|...|.+..+ ..|+.. .+.-+...+.+.|+.+.+...|+...+..+. +..+...|...|...+ ..+.
T Consensus 325 kA~~yY~~s~k-----~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 325 KAFKYYMESLK-----ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred HHHHHHHHHHc-----cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHH
Confidence 55444444433 222221 2222334444444444444444444443221 2333333444333332 2233
Q ss_pred HHHHHHhcCC-----------------------------------------CChHHHHHHHHHHHhcCChhHHHHHHHhc
Q 010961 226 ANQVLNMMKE-----------------------------------------PDDFCLSALISGYANCGKMNDARRVFDRT 264 (496)
Q Consensus 226 a~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (496)
|..++.+..+ +.+...|.+...+...|+++.|...|.+.
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 3333333332 33334444444444555555555544433
Q ss_pred CCC-------Ccc------hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhcccchhhHHHHHHHH
Q 010961 265 TDT-------SSV------MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLAS-VLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 265 ~~~-------~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~ 330 (496)
... +.. +--.+....-..++++.|.+.|+.+.+. .|+-..... +.......+...+|...+.+.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 221 110 0111222233334445555555554443 233222111 111111234445555555555
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-----cCchhhHHHHHHHHH------------hcCCHHHHHHHH
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-----VYDTILLNTMITVYS------------SCGRIEDAKHIF 393 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~a~~~~ 393 (496)
...+ ..++..++.+...+.....+..|.+-|..+. .+|+.+.-+|.+.+. ..+..++|+++|
T Consensus 557 l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 557 LNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred Hhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 4432 3334444444455555555555555443333 234444445555443 234567889999
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-HcCCCc
Q 010961 394 RTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDS 469 (496)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~ 469 (496)
.++.+ .|...-|-+.-.++..|++.+|..+|.+.++.. .-+..+|..+..+|...|++..|.++|+... +....-
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 88776 366777888889999999999999999999875 3456689999999999999999999999654 455666
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 470 DQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
++.+...|.+++.++|++.+|.+.+
T Consensus 715 ~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8899999999999999999998865
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=4.2e-17 Score=163.44 Aligned_cols=385 Identities=11% Similarity=0.036 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAG 117 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 117 (496)
..-.+......|+.++|++++..... .+...+..+..++...|++++|.+++++..+ .+...+..++..+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34445555555666666655555443 1223355555555555666666666555432 22334444555555555
Q ss_pred ChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHHHHHHHHHccchHHHHHH
Q 010961 118 ELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 118 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
++++|+..+++..+ | +.. +..+..++...|+.++|+..+++..+ ..|+ ...+..+..++...+..+.|..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-----~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP-----RAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 55555555555442 2 223 44555555555555555555555555 2232 2223333344444444444444
Q ss_pred HHHHHHHcCCCcch------hHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCCh---hHHHHHHHhc
Q 010961 194 IHSHILVNGLDFDS------VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKM---NDARRVFDRT 264 (496)
Q Consensus 194 ~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~ 264 (496)
.++...+ .|+. .....++......+. ...+++ ++|++.++.+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~--------------------------~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTR--------------------------SEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc--------------------------ChhHHHHHHHHHHHHHHHH
Confidence 4443332 1110 000111111110000 011112 3444444444
Q ss_pred CC-----CCcc-hH----HHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 265 TD-----TSSV-MW----NSMISGYISNNEDTEALLLFHKMRRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 265 ~~-----~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
.+ |+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+.. ...+...+...|++++|...++.+.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 31 1111 01 01122334556666677766666665421 2221 111344566666677777766666553
Q ss_pred CCCc---hHHHHHHHHHHHHhcCChhhHHHHHHhcccC---------------c---hhhHHHHHHHHHhcCCHHHHHHH
Q 010961 334 GVID---DVIVASALLDTYSKRGMPSDACKLFSELKVY---------------D---TILLNTMITVYSSCGRIEDAKHI 392 (496)
Q Consensus 334 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~---~~~~~~l~~~~~~~~~~~~a~~~ 392 (496)
.... .......+..++...|++++|...++.+... + ...+..+...+...|++++|+++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2111 1233444555566667777777666665521 1 11234455666677777777777
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 393 FRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 393 ~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
++++.. | +...+..+...+...|++++|++.+++..+.. |.+...+......+...|++++|..+++.+++.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777654 3 45566777777777778888888887777752 223555666666677777788888887777663
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.5e-16 Score=156.53 Aligned_cols=411 Identities=9% Similarity=0.023 Sum_probs=289.0
Q ss_pred HHHHHHhcCChHHHHHHhhhCCCCChh---hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH-HHH--HHHHHhcCChh
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPRRNCF---SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSW-NML--ISGFAKAGELK 120 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l--~~~~~~~~~~~ 120 (496)
-+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++...|+...+ ..+ ...+...|+++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344466889999999999998863332 233788888888999999999999987644433 333 45777889999
Q ss_pred HHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH
Q 010961 121 TARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 121 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
+|+++|+++.+ | +...+..++..+...++.++|++.++++.. ..|+...+..++..+...++...|.+.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-----~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE-----RDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-----cCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999875 3 456677778888899999999999999977 567766665555555556666669999999
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHH------HHHHHHH-H----hcCC---hhHHHHH
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCL------SALISGY-A----NCGK---MNDARRV 260 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~-~----~~~~---~~~a~~~ 260 (496)
+.+..+. +...+..++....+.|-...|.++..+-++ +....+ ...++.- . ...+ .+.|..-
T Consensus 195 ll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 9987643 677778888888999999999888877653 111111 1111110 0 1111 2334444
Q ss_pred HHhcCC-----CCcc-----hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 261 FDRTTD-----TSSV-----MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 261 ~~~~~~-----~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
++.+.. |... ..--.+-++...|++.++++.|+.+...|.+.-..+-..+..+|...+++++|..++..+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 444333 2111 122344567788889999999999988876645557778888888999999999999988
Q ss_pred HHcC-----CCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--C-------------ch---hhHHHHHHHHHhcCCHH
Q 010961 331 CKVG-----VIDDVIVASALLDTYSKRGMPSDACKLFSELKV--Y-------------DT---ILLNTMITVYSSCGRIE 387 (496)
Q Consensus 331 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~~~~~ 387 (496)
.... ..++......|.-+|...+++++|..+++.+.. | |+ ..+..++..+.-.|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7643 123444457788888889999999998888872 1 11 12344566677788888
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 388 DAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 388 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
+|++.++++.. | |......+...+...|.+.+|.+.++..... .| +..+......++...|++++|..+.+.+.
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888888765 3 5667777888888888888888888666654 44 55667777777788888888888887776
Q ss_pred Hc
Q 010961 464 II 465 (496)
Q Consensus 464 ~~ 465 (496)
+.
T Consensus 512 ~~ 513 (822)
T PRK14574 512 SR 513 (822)
T ss_pred hh
Confidence 64
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=4.6e-18 Score=166.68 Aligned_cols=320 Identities=11% Similarity=0.032 Sum_probs=240.6
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHH
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGF 82 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 82 (496)
.-+..++..+..+|+++.|..+++..+...+.+.. ++..++......|++++|+..|+++.+ | +...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~--~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD--LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh--HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34566778888899999999999999888754444 566677777789999999999998865 3 456788888888
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCc-ccHHHHHHHHHHcCCHHHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNA-IAWNSMIHCYVRNGFAREAVRL 156 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~ 156 (496)
.+.|++++|.+.++++.+ | +...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++++|...
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 899999999999988876 3 456777888888999999999988887643 333 333333 347888999999999
Q ss_pred HHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh----HHHHHHh
Q 010961 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS----ANQVLNM 232 (496)
Q Consensus 157 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 232 (496)
++.+.+. ...++......+..++...|++++|...++.+.+.... +...+..+...+...|++++ |...+++
T Consensus 200 ~~~~l~~---~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 200 ARALLPF---FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHhc---CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9888762 11233344455567778889999999999998876543 56677788888888898885 7888887
Q ss_pred cCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-H
Q 010961 233 MKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA-S 305 (496)
Q Consensus 233 ~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~ 305 (496)
..+ | +...+..+...+...|++++|...+++..+ | +...+..+...+.+.|++++|+..|+.+... .|+. .
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 764 3 355778888888888999999888887665 3 3446677778888889999999888888775 3443 2
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcC
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 334 (496)
.+..+..++...|+.++|...|+.+.+..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33334566778888999998888887764
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=8.7e-17 Score=161.21 Aligned_cols=392 Identities=10% Similarity=-0.047 Sum_probs=272.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHH
Q 010961 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCY 144 (496)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 144 (496)
+.....-.+......|+.++|++++++... .+...+..+...+.+.|++++|.+.|++..+ | +...+..+..++
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 334445556667778888888888877764 3334577777788888888888888887543 3 455667777778
Q ss_pred HHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChh
Q 010961 145 VRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224 (496)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (496)
...|++++|+..+++..+. .+.+.. +..+..++...|+.+.|...++++.+..+. +...+..+..++...|..+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 8888888888888888762 222334 666667777788888888888888776544 4445555666777777777
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHH-----HhCCCH---HHHHHHHHHHH
Q 010961 225 SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY-----ISNNED---TEALLLFHKMR 296 (496)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~~~~~m~ 296 (496)
.|++.++.... ++.....+ .. ......+... ...+++ ++|++.++.+.
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l--------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDL--------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHH--------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 77777776665 21100000 00 0011111111 122334 78888999888
Q ss_pred HC-CCCCCHH-HHH----HHHHHHhcccchhhHHHHHHHHHHcCCC-chHHHHHHHHHHHHhcCChhhHHHHHHhcccCc
Q 010961 297 RN-GVLEDAS-TLA----SVLSACSSLGFLEHGKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKLFSELKVYD 369 (496)
Q Consensus 297 ~~-g~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 369 (496)
+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+- ....+..+|...|++++|+..|+++...+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 64 2233221 111 1133456779999999999999987632 332 22235778999999999999999986322
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------C---hhhHHHHHHHHHhCCChhhHHHHH
Q 010961 370 -------TILLNTMITVYSSCGRIEDAKHIFRTMPN--K-------------S---LISWNSMIVGLSQNGSPIEALDLF 424 (496)
Q Consensus 370 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~---~~~~~~l~~~~~~~g~~~~a~~~~ 424 (496)
......+..++...|++++|...++.+.+ | + ...+..+...+...|+.++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23455667788999999999999998765 2 1 124456778888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+++.... +-+...+..+...+...|++++|++.+++.....+ -+...+..++..+.+.|++++|.++++
T Consensus 383 ~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 383 RELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9998862 55778899999999999999999999999988542 246777788889999999999999875
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.5e-16 Score=150.20 Aligned_cols=452 Identities=13% Similarity=0.089 Sum_probs=316.6
Q ss_pred CccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCC------hhhHHHHHHHHHhcCCHHHHH
Q 010961 19 HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRN------CFSWNAMIEGFMKLGHKEKSL 92 (496)
Q Consensus 19 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~ 92 (496)
..+..+..++...-+-. +..+.+.+.|.+.|...|++..+..+...+...+ ..+|.-+.++|...|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34555555555555544 3333377888888888888888888877776522 245777888888888888888
Q ss_pred HHHhhCCC--CCh--hhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 010961 93 QLFNVMPQ--KND--FSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNG----FAREAVRLFKELN 161 (496)
Q Consensus 93 ~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~~~ 161 (496)
..|-+..+ +|. ..+--|...+.+.|+++.+...|+.+.+ | +..+...|...|...+ ..++|..++.+..
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 88877766 333 3345567788888888888888888875 3 3445556666666554 4566777766666
Q ss_pred HchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH----HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--
Q 010961 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSH----ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-- 235 (496)
Q Consensus 162 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 235 (496)
+. ...|...|..+...+....-+ ..+..+.. +...+-.+.+...|.+...+...|++.+|...|+....
T Consensus 408 ~~----~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 408 EQ----TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred hc----ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 52 344556666666665544333 33554443 44566667888999999999999999999999987652
Q ss_pred -----CCh------HHHHHHHHHHHhcCChhHHHHHHHhcCCCCc---chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 010961 236 -----PDD------FCLSALISGYANCGKMNDARRVFDRTTDTSS---VMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301 (496)
Q Consensus 236 -----~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 301 (496)
++. .+-..+....-..++.+.|.+.|..+....+ ..|--++......+...+|...++...... .
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 222 2233455666777899999999998876332 244444433344578889999998887652 3
Q ss_pred CCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHh------------cCChhhHHHHHHhcc--
Q 010961 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSK------------RGMPSDACKLFSELK-- 366 (496)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~-- 366 (496)
.++..+..+...+.....+..|.+-|....+.- ..+|..+..+|.+.|.. .+..++|+++|.++.
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 334444445556777777778888777666542 23566666666665543 234677889988877
Q ss_pred -cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCCHHHHHH
Q 010961 367 -VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLAS 441 (496)
Q Consensus 367 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ 441 (496)
+.|...-|-+.-.++..|+++.|..+|.++.+ ....+|-.+.++|...|++..|+++|+...+. .-..+......
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 45666778888999999999999999999886 35578999999999999999999999986554 44557888999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
|.+++.+.|.+.+|.+.+.......+.-....+|..+
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999999999999999998887755444445555433
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1e-15 Score=131.74 Aligned_cols=436 Identities=14% Similarity=0.119 Sum_probs=298.4
Q ss_pred hhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHh--cCChHHH-HHHhhhCCC---CChhhHHHHHHHHHhcCCH
Q 010961 15 CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPTDA-LLLFDEMPR---RNCFSWNAMIEGFMKLGHK 88 (496)
Q Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A-~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 88 (496)
...+|.++.+.-+|+.|.+.|.+.+.. +-..|++.-+- ..++.-| .+.|-.|.. ....+| +.|..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccH
Confidence 345677888889999999988777765 66666664333 3333222 234444443 233344 34444
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCC----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHch
Q 010961 89 EKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDL 164 (496)
Q Consensus 89 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 164 (496)
.+ ++-+.......++.++|.++|+-...+.|.+++++.... +..+||.+|.+-.-.. -.+++.+|..
T Consensus 196 Ad---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMis-- 266 (625)
T KOG4422|consen 196 AD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMIS-- 266 (625)
T ss_pred HH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHH--
Confidence 33 666666677889999999999999999999999998753 6678888887654332 2678899988
Q ss_pred hccCCcCHHHHHHHHHHHHccchHH----HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh-HHHHHHhcC-----
Q 010961 165 VERLQCDAFILATVIGACADLAALE----YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS-ANQVLNMMK----- 234 (496)
Q Consensus 165 ~~~~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~----- 234 (496)
..+.||..|+|+++++.++.|+++ .+.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++.
T Consensus 267 -qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 267 -QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred -hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 679999999999999999999776 456788999999999999999999999999888755 444544443
Q ss_pred ---C----CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--------CC---cchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 235 ---E----PDDFCLSALISGYANCGKMNDARRVFDRTTD--------TS---SVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 235 ---~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
+ .|...+...+..|.+..+.+.|.++-.-... ++ ..-|..+....|+....+.-+..|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2345677778888899998888877654332 22 3356667778888899999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-Chh-hHHHHHHhcccCchhhHH
Q 010961 297 RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-MPS-DACKLFSELKVYDTILLN 374 (496)
Q Consensus 297 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~a~~~~~~~~~~~~~~~~ 374 (496)
.+-.-|+..+...++++....|.++-..++|.++...|..........++..+++.. ++. -+.+-|..
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~---------- 495 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV---------- 495 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH----------
Confidence 988889999999999999999999999999999999886666555555555555544 110 11111111
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC----CCCHHHHHHHHHHHhc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL----RMDKFSLASVISACAN 448 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~ 448 (496)
...-++ ..-.+..+..-.++.+ -.....+...-.+.+.|+.++|.+++..+.+.+- .|......-++++..+
T Consensus 496 -~~ak~a-ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 496 -AFAKCA-ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred -HHHHHH-HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 000000 0000011111112222 2334566666777888888899888888855432 2333444566777777
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
.+++-.|...++.|...+.+.-...-+-+.+.|
T Consensus 574 ~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred cCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 888888888888887766543333444444443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.3e-15 Score=150.04 Aligned_cols=406 Identities=10% Similarity=-0.008 Sum_probs=306.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcCChhHHHHHHhhcCCCCcc-cHHHH--HHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ--KNDF-SWNMLISGFAKAGELKTARTLFNDMPRRNAI-AWNSM--IHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~ 154 (496)
...+.|+++.|++.|++..+ |+.. ....++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45789999999999999987 4431 2237888888999999999999999976443 44444 45788889999999
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
++|+++.+. .+-+...+..++..+...++.++|++.++.+.+.. |+...+..++..+...++..+|+..++++.
T Consensus 123 ely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 123 ALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999983 22335666677888899999999999999998764 445555555555555667767999999988
Q ss_pred C--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchH------HHHHHHH---H--hCC---CHHHHHHHHHH
Q 010961 235 E--P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMW------NSMISGY---I--SNN---EDTEALLLFHK 294 (496)
Q Consensus 235 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~------~~l~~~~---~--~~~---~~~~a~~~~~~ 294 (496)
+ | +...+..+.....+.|-...|.++..+-++ +....+ ...++.- . ... -.+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 5 5 466778889999999999999999887553 111000 1111100 0 112 24556666666
Q ss_pred HHHC-CCCCC-HH----HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC
Q 010961 295 MRRN-GVLED-AS----TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY 368 (496)
Q Consensus 295 m~~~-g~~~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 368 (496)
+... +-.|. .. ...-.+-++...|+..++...++.+...+.+....+-..+.++|...+.+++|..+|..+..+
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 6552 22232 22 222445577889999999999999999887766668889999999999999999999998632
Q ss_pred ---------chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch---hhHHHHHHHHHhCCChhhHH
Q 010961 369 ---------DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-------------SL---ISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 369 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~l~~~~~~~g~~~~a~ 421 (496)
+......|..++...+++++|..+++.+.+ | |. ..+..++..+...|+..+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 122246789999999999999999998865 2 11 23455678888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
+.++++.... |-|......+...+...|.+..|++.++...... +-+..+....+.++...|++.+|.+++
T Consensus 437 ~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 437 KKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999998763 5688999999999999999999999998776653 235677788899999999999998776
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=4.8e-17 Score=140.87 Aligned_cols=442 Identities=14% Similarity=0.118 Sum_probs=288.8
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CC------hhhH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RN------CFSW 75 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~ 75 (496)
.-..+..|.+.|.......+|...|+.+.+..+.|+.-..-..+...+.+.+.+.+|++.|..... |. ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 345567778888888999999999999999999888864555677788899999999999886653 32 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CC--------cccHHHHH
Q 010961 76 NAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RN--------AIAWNSMI 141 (496)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--------~~~~~~li 141 (496)
+.+...+.+.|.++.|+..|+...+ ||..+-..|+-++...|+-++..+.|..|.. +| ......|+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 6666678899999999999998876 8877766677777778999999999998863 11 11122222
Q ss_pred HHHHHc---------C--CHHHHHHHHHHHHHchhccCCcCHHH-HHH--------------------HHHHHHccchHH
Q 010961 142 HCYVRN---------G--FAREAVRLFKELNSDLVERLQCDAFI-LAT--------------------VIGACADLAALE 189 (496)
Q Consensus 142 ~~~~~~---------~--~~~~a~~~~~~~~~~~~~~~~p~~~~-~~~--------------------ll~~~~~~~~~~ 189 (496)
.--.+. + +.++++-.-.++.. .-+.|+-.. +.. -..-+.+.|+++
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiia---pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIA---PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc---cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 222221 1 12222222222221 122332110 000 012244566777
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHh--cCChhhHHHHHHhcCCCC---hHHHHHHHHHHHhcCChhHHHHHHHhc
Q 010961 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGK--CGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDRT 264 (496)
Q Consensus 190 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (496)
.|.+++.-+.+..-+.-+..-+.|...+.- ..++..|.++-+.....| ......-.+....+|++++|.+.+++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 777777766655433333333333333332 334555555555544322 222222222334567888888888888
Q ss_pred CCCCcchHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHH
Q 010961 265 TDTSSVMWNSMI---SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341 (496)
Q Consensus 265 ~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 341 (496)
...|...-.++. -.+-..|+.++|+..|-++... +.-+..+...+.+.|....+..+|.+++.+.... ++.|+.+
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 777655433333 3456678888888888776543 3445566667777777778888888887766553 5667788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHH-hCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP--NKSLISWNSMIVGLS-QNG 415 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~-~~g 415 (496)
.+.|...|-+.|+-.+|.+.+-+-- +.+..+...|..-|....-+++++..|++.. +|+..-|..|+..|. +.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 8888888888888888887655433 6677777777777888888888888888753 688888888776655 468
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
++.+|.++++....+ ++.|...+..|++.|...|-
T Consensus 675 nyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888888888887765 56677888888887776663
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=8.2e-13 Score=124.53 Aligned_cols=449 Identities=13% Similarity=0.083 Sum_probs=286.5
Q ss_pred HHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhC---CCCChhhHHHHHHHHHhcCC
Q 010961 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM---PRRNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 11 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 87 (496)
....+...|++++|.+++.+.++..+ ..+..|.+|...|...|+.+++...+-.+ ...|...|-.+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33444456999999999999999874 44447999999999999999998866543 34577889999999999999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc----c----cHHHHHHHHHHcCCHHHHHHH
Q 010961 88 KEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA----I----AWNSMIHCYVRNGFAREAVRL 156 (496)
Q Consensus 88 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~ 156 (496)
++.|.-.|.+..+ ++...+---+..|-+.|+...|.+-|.++..-++ . .-...+..+...++.+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999887 3444444456678889999999988888875322 1 122345566677777888888
Q ss_pred HHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc---------------------------CCCcchhH
Q 010961 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN---------------------------GLDFDSVL 209 (496)
Q Consensus 157 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~ 209 (496)
++..... .+-..+...+++++..+.....++.+......+... +..++..+
T Consensus 303 le~~~s~--~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 303 LEGALSK--EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHhh--ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 8877663 234455566778888888888888887777766651 12222222
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC------CChHHHHHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHH
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGY 279 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~ 279 (496)
-.++-++...+..+....+...+.+ .++..|.-+..++...|++..|+++|..+.. .+...|-.+..+|
T Consensus 381 -~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 -IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred -HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1222233333333333333332222 3455677788888888999999988888775 3456788888888
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHH--------HcCCCchHHHHHHHHHHHHh
Q 010961 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC--------KVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~ 351 (496)
...|.++.|++.|+...... +-+...-..|-..+.+.|+.++|.+++..+. ..+..|+....-...+.+..
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 88888999988888888752 2233344455556778888888888888743 23345556666666677777
Q ss_pred cCChhhHHHHHHhccc--------------------------CchhhHHHHHHHHHhcCCHHHHHHHHhhCC--------
Q 010961 352 RGMPSDACKLFSELKV--------------------------YDTILLNTMITVYSSCGRIEDAKHIFRTMP-------- 397 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------- 397 (496)
.|+.++=...-..|.. ........++.+-.+.++.....+-...-.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 7777664433333220 011122223333333333222222111110
Q ss_pred C---CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCCH---HHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 398 N---KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--RMDK---FSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 398 ~---~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
. .+. ..+.-++..+++.+++++|+.+...+..... .++. ..=...+.++...+++..|...++.|+..
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 111 2344567777788888888888887776432 1111 12223444556778888888888877653
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=2.4e-12 Score=117.07 Aligned_cols=464 Identities=12% Similarity=0.072 Sum_probs=318.4
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcC
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLG 86 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 86 (496)
.|.++.+....++.|..++....+.= |.+. .|.-+|.+..-++.|..+++...+ .+...|-+-...=-.+|
T Consensus 381 ~LWKaAVelE~~~darilL~rAvecc--p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 381 RLWKAAVELEEPEDARILLERAVECC--PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANG 454 (913)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHhc--cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcC
Confidence 34555555666666666666666642 3332 344556666667777777776654 36666666665556677
Q ss_pred CHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC------CCcccHHHHHHHHHHcCCHHH
Q 010961 87 HKEKSLQLFNVMPQ--------KNDFSWNMLISGFAKAGELKTARTLFNDMPR------RNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 87 ~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~ 152 (496)
+.+...+++.+... -+...|..=...|-+.|.+-.+..+...... .--.+|..-...|.+.+.++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHH
Confidence 77777777665432 2344455555555555555555555554432 123477777788888888888
Q ss_pred HHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHH
Q 010961 153 AVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
|..+|....+ +-| +...|......--..|..+....++++++..-++ ....+......+...|++..|..++.
T Consensus 535 arAVya~alq-----vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 535 ARAVYAHALQ-----VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHh-----hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8888888877 444 4455666666666678888888888888876543 44555556666777899999998888
Q ss_pred hcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH
Q 010961 232 MMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-AS 305 (496)
Q Consensus 232 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~ 305 (496)
...+ | +...|-.-+..-..+..++.|..+|.+... ++...|.--+..---.++.++|++++++..+. -|+ ..
T Consensus 609 ~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 609 QAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 8765 3 455788888888889999999999987654 55667766666666778889999999888775 444 44
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS 382 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 382 (496)
.|..+.+.+.+.++++.|...|..-.+. ++..+..|..|...--+.|.+-.|..++++.. +.+...|-..|..-.+
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 5666666777888888888888765543 45566677778888888888999999998877 5577788899999999
Q ss_pred cCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 383 CGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 383 ~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
.|+.+.|..++.+..+ | +...|.--|....+.++-......+++ ..-|++....+...+.....+++|...|
T Consensus 766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877665 3 334566666666666554444444433 2446667777777777777888888888
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
.+....+.. .-.+|..+...+.+.|.-++-.+++
T Consensus 841 ~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 841 ERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHH
Confidence 877764422 3467777777777888666655554
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=1.4e-13 Score=119.65 Aligned_cols=399 Identities=12% Similarity=0.105 Sum_probs=266.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC----CChhhH-HHHHHHHHhcCChhHHHHHHhhcCC--CC------cccHHHHHHH
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMPQ----KNDFSW-NMLISGFAKAGELKTARTLFNDMPR--RN------AIAWNSMIHC 143 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~ 143 (496)
.|.+-|.......+|+..++-+.+ ||.-.. -.+.+.+.+..++.+|+++++-... |+ +...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344555556667778777777665 443221 2234556777788888888776553 21 2244555556
Q ss_pred HHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc------------chhHHH
Q 010961 144 YVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF------------DSVLGS 211 (496)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~ 211 (496)
+.+.|.++.|+..|+...+ ..|+-.+-..|+-++.-.|+.++..+.|..|+.-...| +....+
T Consensus 286 fiq~gqy~dainsfdh~m~-----~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCME-----EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred EEecccchhhHhhHHHHHH-----hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 7788888888888888877 56777666566666666788888888888887643222 222222
Q ss_pred HH-----HHHHHhcC--ChhhHHHHHHhc----CCCChHH---HH------------------HHHHHHHhcCChhHHHH
Q 010961 212 SL-----VNLYGKCG--DFNSANQVLNMM----KEPDDFC---LS------------------ALISGYANCGKMNDARR 259 (496)
Q Consensus 212 ~l-----~~~~~~~~--~~~~a~~~~~~~----~~~~~~~---~~------------------~l~~~~~~~~~~~~a~~ 259 (496)
.. +.-+-+.+ +-++++-.--++ ..|+-.. |. .-...+.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 21 11122211 112222111111 2232110 10 01122678888888888
Q ss_pred HHHhcCCCCcc-----------------------------------hHHHHH-----HHHHhCCCHHHHHHHHHHHHHCC
Q 010961 260 VFDRTTDTSSV-----------------------------------MWNSMI-----SGYISNNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 260 ~~~~~~~~~~~-----------------------------------~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~g 299 (496)
++.-..+.|.. -||.-. +.....|++++|.+.|++.....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 87655443211 111111 11224688999999999988765
Q ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHH
Q 010961 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
-.-....|++=+ .+...|++++|...|-.+... +..+..+...+...|....++.+|++++.+.. +.|+.+..-|
T Consensus 521 asc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 521 ASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred hHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 444444444333 356789999999998776543 23466777788889999999999999998766 7789999999
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCch
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSL 452 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~ 452 (496)
...|-+.|+-..|.+.+-.--+ -+..+...|...|....-+++++.+|++..- ++|+..-|..++..|. +.|++
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999987766554 4777888888888888899999999998765 5999999999988775 57999
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 453 ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 453 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.+|..+++...+ .++-|......|++.+...|
T Consensus 677 qka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 677 QKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 999999998865 36778899999998887776
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.1e-12 Score=123.64 Aligned_cols=426 Identities=12% Similarity=0.065 Sum_probs=292.7
Q ss_pred Cc-chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCC---ChhhHHH
Q 010961 2 DT-RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNA 77 (496)
Q Consensus 2 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 77 (496)
|| ++..|..|...+-+.|+.+.+.. .+++.+...|...+.|..+.....+.|+++.|.-+|.+..+. +...+--
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~--~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALN--FWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 55 67889999999999998887765 556666666777789999999999999999999999999873 4444445
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHhcCChhHHHHHHhhcCC-----CCcccHHHHHHHH
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQKND--------FSWNMLISGFAKAGELKTARTLFNDMPR-----RNAIAWNSMIHCY 144 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~ 144 (496)
-+..|-+.|+...|.+-|.++.+.++ ..-...++.+...++-+.|.+.++.... -+...++.++..+
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 56788899999999999999987222 2223345566667777899988888765 2456789999999
Q ss_pred HHcCCHHHHHHHHHHHHHc------------------------hhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 145 VRNGFAREAVRLFKELNSD------------------------LVERLQCDAFILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
.+...++.|......+... -..+..++... ..+.-++.+.+..+....+.....+
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHH
Confidence 9999999999988888661 00112233333 1223344566666677777777777
Q ss_pred cCCC--cchhHHHHHHHHHHhcCChhhHHHHHHhcCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcch---
Q 010961 201 NGLD--FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVM--- 271 (496)
Q Consensus 201 ~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 271 (496)
.... -+...|..+..++...|.+.+|+.+|..+.. .+...|-.+..+|...|..+.|++.|+.+....+..
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 7743 3566889999999999999999999999874 456789999999999999999999999988744443
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC-----CCc-
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMR--------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-----VID- 337 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~- 337 (496)
--.|...+.+.|++++|.+.+..+. ..+..|+..........+...|+.++-..+-..|+... +-|
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~ 565 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPR 565 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4445567889999999999999864 22345555555556666777787776555544443311 001
Q ss_pred ----------------hHHHHHHHHHHHHhcCChhhHHHHHHhcc--------cCch----hhHHHHHHHHHhcCCHHHH
Q 010961 338 ----------------DVIVASALLDTYSKRGMPSDACKLFSELK--------VYDT----ILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 338 ----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----~~~~~l~~~~~~~~~~~~a 389 (496)
.......++.+-.+.++.....+-...-. .... ..+.-++..+++.+.+++|
T Consensus 566 ~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeA 645 (895)
T KOG2076|consen 566 NKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEA 645 (895)
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 11112222233333332222111111110 0011 1345567788888888888
Q ss_pred HHHHhhCCCC-----Chh----hHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 390 KHIFRTMPNK-----SLI----SWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 390 ~~~~~~~~~~-----~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+.+...+..- +.. .-...+.+.+..+++..|...++.|...
T Consensus 646 l~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 646 LSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888877652 111 1233455666778888888888887764
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=3.5e-13 Score=124.85 Aligned_cols=215 Identities=11% Similarity=-0.013 Sum_probs=122.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH-------HHHHHHHHH
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-------VASALLDTY 349 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~ 349 (496)
..+...|+++.|...++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++.. .|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655543 3334455555555566666666666666665554332221 122223222
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
....+.+...++++.+. +.++.....+...+...|+.++|.+++++..+.....--.++.+....++++++++..+.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 33334445555555554 345556666666666777777776666665542222222233444455777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 427 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+.. +-|+..+..+...|.+.|++++|.+.|+...+ ..|+...+..|..++.+.|+.++|.++++
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66652 33455566677777777777777777777665 34666666677777777777777766654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=2.7e-11 Score=110.40 Aligned_cols=446 Identities=9% Similarity=-0.001 Sum_probs=354.2
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--------CChhhHHHHHHH
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--------RNCFSWNAMIEG 81 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~ 81 (496)
.|.-++.+...++.|+.++....+.- |....+|.+....=-.+|+.+...++.++-.. -+...|-.=...
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 35556677778888999988888764 44444888888888888999888888876542 255566666666
Q ss_pred HHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 152 (496)
|-..|..-.+..+...... .-..||..-...|.+.+.++-|..+|....+ .+...|......--..|..++
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 7777777777776665543 3356888889999999999999999998876 356788888888888899999
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
...+|++.... ++-....+....+.....|+...|..++....+.... +...+..-+..-....++++|..+|.+
T Consensus 569 l~Allqkav~~----~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 569 LEALLQKAVEQ----CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHh----CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999883 4444455555567778889999999999999987665 778888889999999999999999998
Q ss_pred cCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC-cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010961 233 MKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307 (496)
Q Consensus 233 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 307 (496)
... ++...|..-+..---.+..++|.+++++..+ |+ ...|-.+.+.+-+.++.+.|...|..-.+. ++-....+
T Consensus 644 ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 874 7788888888888889999999999998876 44 357777888888899999998888765543 34455566
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCG 384 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 384 (496)
..+.+.=.+.|.+-.|..+++...-.+ +-+...|-..|++-.+.|+.+.|..+..+.. +.+...|..-|....+.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 666666678889999999999988776 5677889999999999999999999888777 556677888888887777
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 385 RIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
+-..+...+++-. .|+...-.+...|....++++|.+.|.+..+.+ +-+..+|.-+..-+.++|.-+.-.+++.....
T Consensus 802 rkTks~DALkkce-~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKCE-HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 7666666666553 466666677788888889999999999999874 55678899999999999998888999988876
Q ss_pred cC
Q 010961 465 IG 466 (496)
Q Consensus 465 ~~ 466 (496)
..
T Consensus 880 ~E 881 (913)
T KOG0495|consen 880 AE 881 (913)
T ss_pred cC
Confidence 43
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-11 Score=108.30 Aligned_cols=360 Identities=13% Similarity=0.028 Sum_probs=231.5
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHH--HHHHHHHHccch
Q 010961 110 ISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL--ATVIGACADLAA 187 (496)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~ 187 (496)
.-.+.+.|..+.|...|......-+..|.+-+....-..+.+.+..+.. +...|...+ ..+..++.....
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~--------~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV--------GLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh--------cCcccchHHHHHHHHHHHHHHHH
Confidence 3345567888888888887766444455544443333333333322221 122221111 123355666667
Q ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCC------ChHHHHHHHHHHHhcCChh-HHHHH
Q 010961 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP------DDFCLSALISGYANCGKMN-DARRV 260 (496)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~-~a~~~ 260 (496)
.+.+.+-.+.....|++.+...-+....+.....|+|+|+.+|+++.+. |..+|+.++-.--...+.. .|..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 8888888888888888877666666667777889999999999999863 4456665554332222221 22222
Q ss_pred HHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH
Q 010961 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
+. +.+=-+.|..++.+.|.-.++.++|...|++..+.+ +-....++.+.+-|...++...|.+-++.+++.+ +.|-.
T Consensus 323 ~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyR 399 (559)
T KOG1155|consen 323 SN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYR 399 (559)
T ss_pred HH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHH
Confidence 22 222225567777778888888888888888888753 3334456666667888888888888888888765 55677
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN 414 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 414 (496)
.|-.|.++|...+.+.=|+-.|++.. +.|+..|.+|..+|.+.++.++|++.|.+... -+...+..|...|-+.
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 78888888888888888888888766 66778888888888888888888888887765 2336777888888888
Q ss_pred CChhhHHHHHHHHHh----CCC-CC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 415 GSPIEALDLFCNMNK----LDL-RM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 415 g~~~~a~~~~~~m~~----~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
++..+|...+++..+ .|. .| ......-|..-+.+.+++++|.......... .+...--..|++-..
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir 551 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIR 551 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 888888887776554 232 22 1222233455566777777777665554332 444444444544443
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.2e-13 Score=115.94 Aligned_cols=332 Identities=13% Similarity=0.168 Sum_probs=245.2
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHH--HHccchHH-HHHHHHHHHHHcCCCcchhHH
Q 010961 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGA--CADLAALE-YGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 134 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~ 210 (496)
+.+-|.|+. +...|....+.-+|+.|.+ .++..+...-..+++. |....++- .-.+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~---e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRS---ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHh---cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc
Confidence 456677765 4677889999999999999 5777777666555543 22222222 222333334433332 22222
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCC----CcchHHHHHHHHHhCCCHH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDT 286 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 286 (496)
+.|++. . ++-+..-....++..+|.+.++--..+.|.+++++..+. +..+||.+|.+-. +.
T Consensus 191 --------K~G~vA--d-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~ 255 (625)
T KOG4422|consen 191 --------KSGAVA--D-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS 255 (625)
T ss_pred --------ccccHH--H-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh
Confidence 233332 2 555555567789999999999999999999999987653 4457777775433 33
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhh----HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhh-HHHH
Q 010961 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH----GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD-ACKL 361 (496)
Q Consensus 287 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~ 361 (496)
...+++.+|....+.||..|||.++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ |..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 337889999999999999999999999999998765 45788899999999999999999999999888865 4444
Q ss_pred HHhcc------------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChh
Q 010961 362 FSELK------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--------KS---LISWNSMIVGLSQNGSPI 418 (496)
Q Consensus 362 ~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~ 418 (496)
+.++. +.|...|...+..|....+.+.|.++..-... |+ ..-|..+....+.....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 33556778888888899999999887665542 22 235667778888888899
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.-...|+.|.-.-+-|+..+...++++....|.++-.-++|.+++..|......+..-+...+++..
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 9999999999988899999999999999999999999999999998886666655555666555544
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=5.6e-11 Score=104.35 Aligned_cols=440 Identities=12% Similarity=0.106 Sum_probs=328.9
Q ss_pred hccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CCh-hhHHHHHHHHHhcCCHHHHH
Q 010961 16 NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSL 92 (496)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~ 92 (496)
..++++..|..+++..+..+. .+.. .|..-+.+=.+......|..++++... |.+ ..|..-+-.=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~-r~it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY-RNIT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc-ccch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 347788999999999998773 2333 888889999999999999999998865 433 23444444445679999999
Q ss_pred HHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccC
Q 010961 93 QLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERL 168 (496)
Q Consensus 93 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (496)
++|++-.+ |+...|.+.++.-.+...++.|..++++.. .|++.+|-.....--+.|+...|..+|+....... .-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d 240 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DD 240 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hH
Confidence 99998876 999999999999999999999999999865 68999999999989999999999999998877310 11
Q ss_pred CcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc-hhHHHHHHHHHHhcCChhhHHHHH--------HhcCC---C
Q 010961 169 QCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVL--------NMMKE---P 236 (496)
Q Consensus 169 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~---~ 236 (496)
.-+...+.+....-.+++.++.|.-+|+-.++.=+... ...|..+...--+-|+........ +.+.+ -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 11223444455555677889999999998887543321 346666666666677766655543 22222 3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCc-----chHHHHH--------HHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTSS-----VMWNSMI--------SGYISNNEDTEALLLFHKMRRNGVLED 303 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~~g~~~~ 303 (496)
|-.+|-..++.-...|+.+...++|++.+...+ ..|.-.| ..=....+.+.+.++|+...+. ++..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 556777888888889999999999999876221 1222222 1123568899999999999884 5666
Q ss_pred HHHHHHHHHHH----hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHH
Q 010961 304 ASTLASVLSAC----SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 304 ~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
..||..+--.| .+..++..|.+++...+ |..|...++...|..-.+.++++....++++.. +.+..+|.-.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 77777654443 46789999999998776 557888899999999999999999999999888 4566778878
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh----
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN-KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA---- 447 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---- 447 (496)
...-...|+.+.|..+|+-..+ |. ...|.+.|+.-...|.++.|..+++++.+. .+...+|.++..--.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccc
Confidence 8888889999999999998775 43 346777777778899999999999999986 444556665554332
Q ss_pred -ccC-----------chhhHHHHHHHHH
Q 010961 448 -NIS-----------SLELGEQVFARVT 463 (496)
Q Consensus 448 -~~g-----------~~~~a~~~~~~~~ 463 (496)
..| ....|..+|++..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHH
Confidence 233 5567888888664
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.7e-12 Score=119.02 Aligned_cols=273 Identities=9% Similarity=-0.010 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHhhCCC--CChhhHHHH-HHHHHhcCChhHHHHHHhhcCC--CCcccHH--HHHHHHHHcCCHHHHHHHH
Q 010961 85 LGHKEKSLQLFNVMPQ--KNDFSWNML-ISGFAKAGELKTARTLFNDMPR--RNAIAWN--SMIHCYVRNGFAREAVRLF 157 (496)
Q Consensus 85 ~~~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~ 157 (496)
.|+++.|.+.+....+ +++..+..+ .....+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5788888877776554 223333333 3334677888888888887765 2322222 2356777788888888888
Q ss_pred HHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch-------hHHHHHHHHHHhcCChhhHHHH
Q 010961 158 KELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDS-------VLGSSLVNLYGKCGDFNSANQV 229 (496)
Q Consensus 158 ~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 229 (496)
+++.+ ..| +...+..+...+.+.|+++.+.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 177 ~~~~~-----~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 177 DKLLE-----VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHh-----cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88876 334 4456667777778888888888888888776654322 1223333333344455666666
Q ss_pred HHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010961 230 LNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 230 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
++.+.+ .++.....+...+...|+.++|.+.+++..+.....--.++.+.+..++.+++++..+...+. .+-|...
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l 330 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLL 330 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh-CCCCHHH
Confidence 666653 355556666666666666666666666555432222222334444456666666666666554 1334444
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 307 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
+..+...|.+.+++++|...|+.+.+. .|+...+..+..++...|+.++|.+++++.
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555556666666666666666666654 355555556666666666666666666543
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7.2e-11 Score=103.69 Aligned_cols=428 Identities=11% Similarity=0.082 Sum_probs=305.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDF-SWNMLISGFAKAG 117 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~ 117 (496)
|..-.+.=..++++..|.++|++... .+...|-.-+..=++...+..|..++++... |-+. .|--.+..--..|
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 33334444456777888889988876 5666777778888888889999999988776 4432 2333333444568
Q ss_pred ChhHHHHHHhhcC--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHH
Q 010961 118 ELKTARTLFNDMP--RRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIH 195 (496)
Q Consensus 118 ~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 195 (496)
++..|.++|++-. +|+..+|++.|..-.+-..++.|..+|++..- +.|+..+|....+.-.+.|....+..+|
T Consensus 156 Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999998876 48999999999999999999999999999877 7799999998888888999999999999
Q ss_pred HHHHHc-CC-CcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC---hHHHHHHHHHHHhcCChhHHHHHH-------
Q 010961 196 SHILVN-GL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD---DFCLSALISGYANCGKMNDARRVF------- 261 (496)
Q Consensus 196 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~------- 261 (496)
+..++. |- ..+...+.+....-.++..++.|.-+|+-..+ |. ...|..+...--+-|+.....+..
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 887763 21 12334555666666667788888888766553 22 334555555444555544443332
Q ss_pred -HhcCCCCc---chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHH----HHHHH-H---hcccchhhHHHHH
Q 010961 262 -DRTTDTSS---VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS--TLA----SVLSA-C---SSLGFLEHGKQVH 327 (496)
Q Consensus 262 -~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~----~l~~~-~---~~~~~~~~a~~~~ 327 (496)
+.....|+ .+|--.+..-...|+.+...++|++.... ++|-.. .+. .-|+. | ....+.+.+.+++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 23333443 46666677777789999999999998876 555221 111 11221 1 2467889999999
Q ss_pred HHHHHcCCCchHHHHHHH----HHHHHhcCChhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C
Q 010961 328 GHACKVGVIDDVIVASAL----LDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K 399 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 399 (496)
+..++. ++....|+..+ .+.-.++.++..|.+++.... -|..-++...|..-.+.++++.+.+++++..+ |
T Consensus 390 q~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 390 QACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 998883 44455555443 344456789999999998877 57777888889988999999999999999886 3
Q ss_pred -ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHH
Q 010961 400 -SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477 (496)
Q Consensus 400 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 477 (496)
|..+|......-...|+.+.|..+|.-..+... ......|...|+--...|.+++|..+++.+.+.. +...+|-++
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisF 546 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISF 546 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhH
Confidence 567888877777888999999999998887531 2234567888888888999999999999887754 233355555
Q ss_pred HHH
Q 010961 478 VDF 480 (496)
Q Consensus 478 ~~~ 480 (496)
...
T Consensus 547 A~f 549 (677)
T KOG1915|consen 547 AKF 549 (677)
T ss_pred HHH
Confidence 443
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=2.3e-12 Score=120.17 Aligned_cols=217 Identities=11% Similarity=-0.047 Sum_probs=123.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH---Hh-
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY---SK- 351 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~- 351 (496)
...+...|+++.|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.......-..++ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666543 3344455555556666666666666666666654332222111111111 11
Q ss_pred ---cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhh---HHHHHHHHHhCCChhhH
Q 010961 352 ---RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLIS---WNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 352 ---~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~g~~~~a 420 (496)
....+...+.+.... +.++..+..+...+...|+.+.|.+++++..+ |+... ...........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 112223333333333 13556666666777777777777777776654 33321 11122222334666777
Q ss_pred HHHHHHHHhCCCCC-CH--HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 421 LDLFCNMNKLDLRM-DK--FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 421 ~~~~~~m~~~~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+.+++..+. .| |+ ....++.+.+.+.|++++|.+.|+........|+...+.++...+.+.|+.++|.++++
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777776665 33 44 55667777788888888888888854444456777777788888888888888877765
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=9.7e-13 Score=123.58 Aligned_cols=203 Identities=11% Similarity=0.060 Sum_probs=137.2
Q ss_pred CCcchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHH
Q 010961 1 MDTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIE 80 (496)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 80 (496)
|.|+..||.+++..|+..|+.+.|. +|..|.-...+.... +++.++.+....++.+.+. +|...+|..|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~-vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREG-VFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccch-hHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 5688999999999999999999999 888888776666666 8888888888888877665 678889999999
Q ss_pred HHHhcCCHHH---HHHHHhhCCC-------------------------CChhhHHHHHHHHHhcCChhHHHHHHhhcC--
Q 010961 81 GFMKLGHKEK---SLQLFNVMPQ-------------------------KNDFSWNMLISGFAKAGELKTARTLFNDMP-- 130 (496)
Q Consensus 81 ~~~~~~~~~~---a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 130 (496)
+|...||... ..+.++.+.. ||. ...+......|-++.+++++..++
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999988654 3332222221 111 112222233344444444443332
Q ss_pred -------------------------------C-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH
Q 010961 131 -------------------------------R-RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178 (496)
Q Consensus 131 -------------------------------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 178 (496)
+ +++.+|..++.+-..+|+.+.|..++.+|++ .|++.+..-|..+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke---~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE---KGFPIRAHYFWPL 245 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH---cCCCcccccchhh
Confidence 1 4566677777777777777777777777777 5666666666666
Q ss_pred HHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 010961 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (496)
+-+ .++...+..++.-|...|+.|+..|+...+..+..+|
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 544 6666677777777777777777777766655555533
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=3.8e-15 Score=131.91 Aligned_cols=250 Identities=17% Similarity=0.149 Sum_probs=70.2
Q ss_pred HHHHHHHhcCChhhHHHHHHh-cCC---C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCC
Q 010961 212 SLVNLYGKCGDFNSANQVLNM-MKE---P-DDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNN 283 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~-~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~ 283 (496)
.+...+.+.|++++|.++++. +.. | +...|..+.......++.+.|.+.++++...+ +..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 456667777788888777743 222 2 33334444445555566666666666555422 2234444444 4555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhhHHHHH
Q 010961 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLF 362 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 362 (496)
++++|.+++....+. .++...+...+..+.+.++++++..+++.+.... .+.+...+..+...+.+.|++++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666555544332 2334444455555555555666555555554322 2334445555555555555555555555
Q ss_pred HhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 010961 363 SELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLAS 441 (496)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 441 (496)
++.... .| |....+.++..+...|+.+++.++++...+.. +.|+..+..
T Consensus 170 ~~al~~-----------------------------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 219 (280)
T PF13429_consen 170 RKALEL-----------------------------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDA 219 (280)
T ss_dssp HHHHHH------------------------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHH
T ss_pred HHHHHc-----------------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 544410 13 24445555555555666665555555555442 344455555
Q ss_pred HHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 442 VISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+..++...|++++|...++...+.. +.|+.+...+.+++...|+.++|.++.+
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 6666666666666666666555543 2255555566666666666666655543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=2e-12 Score=120.50 Aligned_cols=285 Identities=12% Similarity=0.004 Sum_probs=165.3
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAF-ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (496)
.|+++.|.+.+.+..+ ..|+.. .+.....+....|+.+.+.+.+....+....+...+.......+...|+++.
T Consensus 97 ~g~~~~A~~~l~~~~~-----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 97 EGDYAKAEKLIAKNAD-----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred CCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4556666655555443 233322 2222234444555555555555555443222221222223444445555555
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010961 226 ANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS 305 (496)
Q Consensus 226 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 305 (496)
|...++.+.+.. ..++..+..+...+...|++++|.+.+..+.+.++.+...
T Consensus 172 Al~~l~~l~~~~----------------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 172 ARHGVDKLLEMA----------------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred HHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 555555544311 0124456666677777777777777777777775433222
Q ss_pred HHHHHHHHH---hcccchhhHHHHHHHHHHcCC---CchHHHHHHHHHHHHhcCChhhHHHHHHhccc--Cchhh---HH
Q 010961 306 TLASVLSAC---SSLGFLEHGKQVHGHACKVGV---IDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTIL---LN 374 (496)
Q Consensus 306 ~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~ 374 (496)
....-..++ ...+..+.+...+..+.+... +.++..+..+...+...|+.++|.+.+++..+ ||... ..
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~ 303 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL 303 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH
Confidence 211111111 222233333344444444322 13667777788888888888888888887772 33321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-Ch--hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN--K-SL--ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
.........++.+.+.+.++...+ | |+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 222222334667777777766654 3 34 556688999999999999999999655544589998899999999999
Q ss_pred CchhhHHHHHHHHHH
Q 010961 450 SSLELGEQVFARVTI 464 (496)
Q Consensus 450 g~~~~a~~~~~~~~~ 464 (496)
|+.++|.+++++...
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987543
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.3e-14 Score=128.48 Aligned_cols=252 Identities=16% Similarity=0.080 Sum_probs=82.3
Q ss_pred HHHHHccchHHHHHHHHHHHHHcC-CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---hHHHHHHHHHHHhcCCh
Q 010961 179 IGACADLAALEYGKQIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANCGKM 254 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 254 (496)
...+.+.|+++.|.++++...... .+.+...+..+.......++++.|...++++...+ +..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444445555555555553333222 12223333334444444555555555555554321 2234444444 455555
Q ss_pred hHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 010961 255 NDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331 (496)
Q Consensus 255 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 331 (496)
++|.++++...+ +++..+..++..+...++++++..+++...... .+++...|..+...+.+.|+.++|...+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554432 345566667777788888888888888876532 34566677777777888888888888888888
Q ss_pred HcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 010961 332 KVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGL 411 (496)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 411 (496)
+.. +.+..+...++..+...|+.+++.+++...... ...|+..+..+..+|
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~----------------------------~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA----------------------------APDDPDLWDALAAAY 224 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------------------------HTSCCHCHHHHHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----------------------------CcCHHHHHHHHHHHh
Confidence 764 335666777777777778777766666644310 012233344444445
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
...|+.++|+.++++..+.. +.|+.....+..++...|+.++|.++.+.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 55555555555555544431 33444555555555555555555555443
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7.4e-13 Score=120.94 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC------CChHHHHHHHHHHHhcCChhHHHHH
Q 010961 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (496)
+.++|...|..+.+ .+.-+..+...+..+|...+++++|.++|+.+.+ .+...|.+.+-.+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 34455555555322 2222335555666666666666666666666653 3445555555443322211111111
Q ss_pred HHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH
Q 010961 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV 339 (496)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 339 (496)
+-......+.+|.++.++|.-+++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.. ++
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DP 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----Cc
Confidence 11122233567777777777777777777777766653 34 5566666666666666677777766665542 33
Q ss_pred HHHH---HHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 010961 340 IVAS---ALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVG 410 (496)
Q Consensus 340 ~~~~---~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 410 (496)
..|+ .+...|.+.++++.|+-.|++.. +.+.+....+...+-+.|+.|+|+.++++... .|+..--..+..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 3333 34556677777777777777666 34555666666677777777777777777653 344444445666
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch
Q 010961 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470 (496)
Q Consensus 411 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 470 (496)
+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+.+...++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 77788888999999988885 233566788888888888999988888888877554443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.1e-13 Score=121.51 Aligned_cols=272 Identities=14% Similarity=0.128 Sum_probs=156.5
Q ss_pred ChHHHHHHhhhCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCChhHHHHHH
Q 010961 56 NPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQ------KNDFSWNMLISGFAKAGELKTARTLF 126 (496)
Q Consensus 56 ~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (496)
+..+|+.+|..++. +|. .....+..+|...+++++|.++|+.+.+ .+..+|.+.+.-+-+.=.+.---+-+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45667777777543 232 3444566777777777777777777765 35567777666553322221111111
Q ss_pred hhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc
Q 010961 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDF 205 (496)
Q Consensus 127 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 205 (496)
-.+....+.+|.++..+|.-+++.+.|++.|++..+ +.| ..++|..+..-+.....+|.|...|+..+.....
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 122223456777777777777777777777777766 555 4566666666666666677777766665543211
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCCC---ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHH
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEP---DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGY 279 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 279 (496)
+-..|-.+.-.|.+.++++.|+-.|++..+. +.+....+...+-+.|+.++|+++++++.. .|+..--..+..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 2223344556666667777777666666652 233444445555566666666666665443 2333333344555
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC
Q 010961 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 334 (496)
...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|..-|..+.+..
T Consensus 568 ~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5566666666666666653 22233445555555666666666666666555543
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.2e-11 Score=105.70 Aligned_cols=432 Identities=14% Similarity=0.094 Sum_probs=276.2
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhh--CCCCChhhHHHHHHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDE--MPRRNCFSWNAMIEG 81 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~l~~~ 81 (496)
+..-+..+++-+..+.++..|.-+-+.....+..|... | -+++++.-.|.+++|..+... +.+.|..+......+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~-~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--Y-WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--H-HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 45567778888888999999999888888777555553 3 478899999999998877654 445788888889999
Q ss_pred HHhcCCHHHHHHHHhhCCC---------CC--------hhh----HHH-------HHHHHHhcCChhHHHHHHhhcCCCC
Q 010961 82 FMKLGHKEKSLQLFNVMPQ---------KN--------DFS----WNM-------LISGFAKAGELKTARTLFNDMPRRN 133 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~---------~~--------~~~----~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~ 133 (496)
+.+..++++|..++..... .| ..- -+. -...|....+.++|...+.+....|
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 9999999999999983321 11 000 001 1123445567788888888777655
Q ss_pred cccHHHHH---HHHHHc-----------------CC-HHHHHHHHHH----HHHc---------hhccCCcCHHHHHHHH
Q 010961 134 AIAWNSMI---HCYVRN-----------------GF-AREAVRLFKE----LNSD---------LVERLQCDAFILATVI 179 (496)
Q Consensus 134 ~~~~~~li---~~~~~~-----------------~~-~~~a~~~~~~----~~~~---------~~~~~~p~~~~~~~ll 179 (496)
+..|..+. ....-. +. .+.-..+|+- +... ...+..-+......-.
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 55444332 221111 11 1111111210 0000 0012223344444445
Q ss_pred HHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhH
Q 010961 180 GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMND 256 (496)
Q Consensus 180 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 256 (496)
.-|....++....++.+...+..+ ++...+..-|.++...|+..+-..+=.++.+ | .+.+|-++.--|...|+.++
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHH
Confidence 556677888888888888877543 3455555556677777877776666666664 3 35678888888888888888
Q ss_pred HHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 257 ARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 257 a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
|.+.|.+...-| ...|-.+..+|.-.|..++|+..|...-+. -|..+ -+--+.--|.+.++.+.|.++|.+...
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 888888766544 357888888888888888888888776553 11111 111123346778888888888888776
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc---------C-chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---C
Q 010961 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---------Y-DTILLNTMITVYSSCGRIEDAKHIFRTMPN---K 399 (496)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~ 399 (496)
.. +.|+.+.+.+.-.....+.+.+|..+|+.... + -..+++.|..+|.+.+.+++|+..+++... .
T Consensus 409 i~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 409 IA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred cC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 53 55677777777777777888888888876541 0 122455666666666677777666666542 4
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 444 (496)
+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 556666666666666777777766666554 3565544444443
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=7.1e-11 Score=104.14 Aligned_cols=402 Identities=10% Similarity=-0.014 Sum_probs=235.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc---ccHHHHHHHHHHcC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKAGELKTARTLFNDMPRRNA---IAWNSMIHCYVRNG 148 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~ 148 (496)
+-....-|.++|++++|++.|.+..+ || +..|.....+|...|+|+++.+.-....+-++ .++..-.+++-..|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 44555667788899999999998876 77 67788888889999999988888877776433 24555556677778
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH-cC--CCcchhHHHHHHHHHHhcCChhh
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-NG--LDFDSVLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~ 225 (496)
++++|+.=..-..-. .++.-.. + ..++.-..+ ..+..-.++-.+ .+ +-|+.....+....+... +.
T Consensus 198 ~~~eal~D~tv~ci~--~~F~n~s-~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~- 266 (606)
T KOG0547|consen 198 KFDEALFDVTVLCIL--EGFQNAS-I-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK- 266 (606)
T ss_pred cHHHHHHhhhHHHHh--hhcccch-h-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc-
Confidence 877776533322221 1111111 0 011111000 111122222222 12 223333222222222110 00
Q ss_pred HHHHHHhcCCCChHHHHHHHHHH----Hh-cCChhHHHHHHHhcC-------CCC---------cchHHHHHHHHHhCCC
Q 010961 226 ANQVLNMMKEPDDFCLSALISGY----AN-CGKMNDARRVFDRTT-------DTS---------SVMWNSMISGYISNNE 284 (496)
Q Consensus 226 a~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~ 284 (496)
..+..+.......+..++ .. ...+.+|...+.+-. ..+ ..+...-..-+.-.|+
T Consensus 267 -----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 267 -----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 000000011111111111 00 012233333332211 011 1122222223445678
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
.-.|..-|+..+.....++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-.+++.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876433322 26667777888888888888888888875 45667788888888888889999988888
Q ss_pred cccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC-----CC
Q 010961 365 LKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-----LR 433 (496)
Q Consensus 365 ~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~ 433 (496)
....+ ...|.-+.-+..+.++++++...|++..+ | .+..|+.....+..++++++|.+.|+...+.. +.
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 87443 34555555566678888999999988876 4 45678888888888999999999998887642 11
Q ss_pred CCHHHH--HHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 434 MDKFSL--ASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 434 p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
.+..++ ..++..- =.+++..|.+++++.++...+ ....+.+|...-...|+.++|+++|++
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122222 2222211 237888899998888875543 345777888888889999999988863
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1e-11 Score=103.66 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCHHHHHHHHhhCCCCChhhH---HHHHHHHHhcCChhHHHHHHhhcCC-CCcc------cHHHHHHHHHHcCCHHHHHH
Q 010961 86 GHKEKSLQLFNVMPQKNDFSW---NMLISGFAKAGELKTARTLFNDMPR-RNAI------AWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~~~~~~a~~ 155 (496)
++.++|.++|-+|.+.|+.|| .+|.+.|.+.|.+|.|+++.+.+.+ ||.. +...|..-|...|-+|.|.+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456666666666665443333 3455556666666666666665554 2221 22233444555555555555
Q ss_pred HHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
+|..+... -.--......|+..|-...+|++|.++-+++.+.+
T Consensus 129 ~f~~L~de----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 129 IFNQLVDE----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHhcc----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 55555442 11112233444444444444444444444444443
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7e-12 Score=104.61 Aligned_cols=276 Identities=13% Similarity=0.121 Sum_probs=124.3
Q ss_pred CChHHHHHHhhhCCCCChhhHH---HHHHHHHhcCCHHHHHHHHhhCCC-CChh------hHHHHHHHHHhcCChhHHHH
Q 010961 55 GNPTDALLLFDEMPRRNCFSWN---AMIEGFMKLGHKEKSLQLFNVMPQ-KNDF------SWNMLISGFAKAGELKTART 124 (496)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~~ 124 (496)
..+++|+..|-+|.+.|+.++. +|.+.|.+.|..|+|+.+.+.+.+ ||.. ....|..-|...|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444443332222 334444444444444444444433 2211 12223333444444555555
Q ss_pred HHhhcCC-C--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCH-HHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 125 LFNDMPR-R--NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-FILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 125 ~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
+|..+.+ + -..+...|+..|-...+|++|++.-+++.+.+........ ..|.-+...+....+.+.|...+.+..+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 5544443 1 1223344444455555555555554444442111111111 1233344444444455555555555544
Q ss_pred cCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCh----HHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHH
Q 010961 201 NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD----FCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNS 274 (496)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ 274 (496)
.+.+ .+..--.+.+.....|++..|.+.++.+.+.|+ .+...|..+|...|+.++....+.++.+ +++..-..
T Consensus 209 a~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~ 287 (389)
T COG2956 209 ADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELM 287 (389)
T ss_pred hCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHH
Confidence 4322 223333444455555555555555555554332 2334444555555555555555554443 33344444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---ccchhhHHHHHHHHHHc
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS---LGFLEHGKQVHGHACKV 333 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 333 (496)
+...-....-.+.|..++.+-... +|+...+..++..-.. .|...+-...+.+|...
T Consensus 288 l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 288 LADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444444444455555555544443 6777777777776443 23345555556666543
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.5e-10 Score=100.13 Aligned_cols=372 Identities=12% Similarity=0.063 Sum_probs=254.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcc-cHHHHHHHHHHcCC
Q 010961 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAI-AWNSMIHCYVRNGF 149 (496)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~ 149 (496)
|...+......+.+.|....|++.|......-+..|.+-+....-..+.+.+..+....+..+.. .=-.+..++-...+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 55555555566778888999999888877644444444444333334455554444444332211 11234455666667
Q ss_pred HHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCC--cchhHHHHHHHHHHhcCChhhHH
Q 010961 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLD--FDSVLGSSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 227 (496)
.+++..-.+.... .|+..+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.-.....+.---
T Consensus 243 ~~e~~~k~e~l~~---~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 243 HEEALQKKERLSS---VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHh---ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 8888887777777 345555555555555666788999999999999987431 15567766654433222222211
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010961 228 QVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304 (496)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 304 (496)
...-.+.+--+.|...+.+-|.-.++.++|...|++..+-| ..+|+.+..-|....+...|++-|+...+-. +-|-
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~Dy 398 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDY 398 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhH
Confidence 22222333345677788888888999999999999888744 4578888999999999999999999988863 6678
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH
Q 010961 305 STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 381 (496)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 381 (496)
..|-.+.++|.-.+-..-|.-.|++..+.. +.|..++.+|.++|.+.++.++|++.|.... ..+...+..|.+.|-
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 888889999999999999999999988864 5688899999999999999999999998877 334578889999999
Q ss_pred hcCCHHHHHHHHhhCCC-------CChh---hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 382 SCGRIEDAKHIFRTMPN-------KSLI---SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~-------~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
+.++.++|...|++-.+ .+.. +---|..-+.+.+++++|.......... .-.
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------~~e 539 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------ETE 539 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------Cch
Confidence 99999999888776543 1221 2222555566777777776655444332 234
Q ss_pred hhhHHHHHHHHHHc
Q 010961 452 LELGEQVFARVTII 465 (496)
Q Consensus 452 ~~~a~~~~~~~~~~ 465 (496)
.++|..+++++.+.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 57777888777653
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=5.2e-09 Score=95.72 Aligned_cols=412 Identities=14% Similarity=0.136 Sum_probs=246.6
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHH
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (496)
.-++....+++....+..|...++.-+...-.++|...++.....|-++-++.++++..+-++..-+--+.-+++.++++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 33445556677777777777766654333333377777777777777778888888877767777777788888888888
Q ss_pred HHHHHHhhCCCC----------ChhhHHHHHHHHHhcCC---hhHHHHHHhhcCC--CC--cccHHHHHHHHHHcCCHHH
Q 010961 90 KSLQLFNVMPQK----------NDFSWNMLISGFAKAGE---LKTARTLFNDMPR--RN--AIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 90 ~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~ 152 (496)
+|-+.+...... +...|.-+.+..++.-+ --...++++.+.. +| ...|++|.+.|++.|.+++
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 888888777642 23345555554444322 2223345555543 23 3478999999999999999
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccch----------------------HHHHHHHHHHHHHcCCC------
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAA----------------------LEYGKQIHSHILVNGLD------ 204 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~~------ 204 (496)
|.++|++..+ ......-|..+..+|+.-.. ++....-++.+...+.-
T Consensus 267 arDvyeeai~-----~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 267 ARDVYEEAIQ-----TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred HHHHHHHHHH-----hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999877 23344445555555543221 22223333333332210
Q ss_pred -----cchhHHHHHHHHHHhcCChhhHHHHHHhcCC---C------ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcc
Q 010961 205 -----FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---P------DDFCLSALISGYANCGKMNDARRVFDRTTDTSSV 270 (496)
Q Consensus 205 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (496)
.+...+..-+ -...|+..+....+.+..+ | -...|..+...|-..|+.+.|..+|++..+.+-.
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 0111111111 1123455555555555432 1 1245888899999999999999999998874433
Q ss_pred -------hHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------CCC------CHHHHHHHHHHHhcccchhhHHHH
Q 010961 271 -------MWNSMISGYISNNEDTEALLLFHKMRRNG-----------VLE------DASTLASVLSACSSLGFLEHGKQV 326 (496)
Q Consensus 271 -------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----------~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 326 (496)
+|..-...=.+..+++.|+++++...... .++ +...|...+..-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 44444455556778888888877765321 111 122344444444566788888999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc----cCc-hhhHHHHHHHHHh---cCCHHHHHHHHhhCCC
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK----VYD-TILLNTMITVYSS---CGRIEDAKHIFRTMPN 398 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 398 (496)
++.+.+..+.... +.-.....+-...-++++.++|++-. .|+ ..+|+..+.-+.+ ...++.|..+|++..+
T Consensus 500 YdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9998887654322 22223333445566788888888766 233 3466666655543 3468889999988876
Q ss_pred CC-hhhHHHHHHHHH----hCCChhhHHHHHHHHHh
Q 010961 399 KS-LISWNSMIVGLS----QNGSPIEALDLFCNMNK 429 (496)
Q Consensus 399 ~~-~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~ 429 (496)
.- +..-.++--.|+ +.|-...|+.++++...
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 21 111112222232 35777777888777654
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=5.1e-10 Score=94.88 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=135.2
Q ss_pred hhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhcccchhhHHHHHH
Q 010961 254 MNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA-----CSSLGFLEHGKQVHG 328 (496)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~ 328 (496)
-+.|++++-.+.+.-+.+--.++-.|.++++..+|..+.+++.. ..|-......+..+ ......+.-|.+.|.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 45555555544443344555566678899999999988877643 24444333333332 222334566777777
Q ss_pred HHHHcCCCchH-HHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---Ch
Q 010961 329 HACKVGVIDDV-IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SL 401 (496)
Q Consensus 329 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 401 (496)
..-+++...|. .--.++..++.-..++++++..+..+. ..|...--.+.++++..|++.+|+++|-++..| |.
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 66665544332 222345555556667888888888777 334444445788899999999999999988875 44
Q ss_pred hhHHH-HHHHHHhCCChhhHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 402 ISWNS-MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS-LASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 402 ~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
.+|.+ |.++|.+.++++.|+.++-++.. +-+..+ ...+...|.+.+.+=-|.+.|..+....+.
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 56654 56788899999998877665543 334444 344556688888888888888888765433
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=2.8e-10 Score=98.18 Aligned_cols=275 Identities=15% Similarity=0.057 Sum_probs=177.5
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCC--C--hHHHHHHHHHHHhcCChhHHHHH
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP--D--DFCLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~a~~~ 260 (496)
.|++.+|++...+..+.+..| ...|..-..+-...|+.+.+-.++.+..++ | ....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777766665443 233444455566677777777777777653 3 23344555666677777777766
Q ss_pred HHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 261 FDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA-------STLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 261 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
++++.+ .++........+|.+.|++.....++..|.+.|.-.++ .++..+++-....+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 665443 45678888889999999999999999999988876554 34556666665666666655666655
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHH
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWN 405 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 405 (496)
..+ .+.++....+++.-+.++|+.++|.++..+..+ -|+. -...-.+.+.++.+.-++..+.-.+ .++..+.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 443 344566667777778888888888887776652 2222 2222333444554444433333222 3446667
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+|...|.+++.+.+|.+.|+...+. .|+..+|+.+..++.+.|++++|.+..++....
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7777777777777777777766654 677777777777777777777777777765543
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.5e-10 Score=100.52 Aligned_cols=397 Identities=11% Similarity=0.024 Sum_probs=278.1
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhC----CC-----CC---
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM----PR-----RN--- 71 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~-----~~--- 71 (496)
||....-+.+.+...+++++|.-+...-.-.+ .+.. ........+.+...+++|..++.+- .. .+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~-cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIA-CRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHH-HHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 45555666777777777777766555442222 2333 6666778888999999999998833 11 11
Q ss_pred -----hhh-----------HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh--------------------
Q 010961 72 -----CFS-----------WNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK-------------------- 115 (496)
Q Consensus 72 -----~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 115 (496)
..- +-.-...|....+.++|...|.+..-.|...|..+...-..
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 100 11111235556678888888888776665554433221110
Q ss_pred c-CChhHHHHHHhhc----CC-------C---------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHH
Q 010961 116 A-GELKTARTLFNDM----PR-------R---------NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174 (496)
Q Consensus 116 ~-~~~~~a~~~~~~~----~~-------~---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~ 174 (496)
. .+.+.-..+|+.. .. + +........+-+...+++.+..++++..... .++....
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~ 280 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPC 280 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcch
Confidence 0 1122222233211 10 1 2233344445667789999999999999884 4555566
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC---hHHHHHHHHHHHhc
Q 010961 175 LATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD---DFCLSALISGYANC 251 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~ 251 (496)
+..=|.++...|+......+=..+++.-+. .+.+|-++...|.-.|..++|++.|.+...-| ...|-.+...|.-.
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 666677888889888888888888876443 67788899988989999999999999877533 46899999999999
Q ss_pred CChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHH
Q 010961 252 GKMNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG 328 (496)
Q Consensus 252 ~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 328 (496)
|..++|+..+....+ + ....+--+.--|.+.++..-|.+.|...... .+-|+..++-+.-.....+.+.+|..+|.
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 999999998876554 2 2233444556788899999999999888764 35567777777766778899999999999
Q ss_pred HHHHc----C--CCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 010961 329 HACKV----G--VIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP-- 397 (496)
Q Consensus 329 ~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 397 (496)
..+.. + ..--..+++.|..+|.+.+.+++|+..++... +.+..++.++.-.|...|+++.|.+.|.+..
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 87732 1 11134578899999999999999999999877 6788899999999999999999999999876
Q ss_pred CCChhhHHHHHH
Q 010961 398 NKSLISWNSMIV 409 (496)
Q Consensus 398 ~~~~~~~~~l~~ 409 (496)
+|+-.+-..++.
T Consensus 519 ~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 519 KPDNIFISELLK 530 (611)
T ss_pred CCccHHHHHHHH
Confidence 466555555544
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=2.8e-10 Score=98.20 Aligned_cols=275 Identities=12% Similarity=0.053 Sum_probs=154.7
Q ss_pred cCChhHHHHHHhhcCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHH
Q 010961 116 AGELKTARTLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGK 192 (496)
Q Consensus 116 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 192 (496)
.|++.+|++...+-.+. ....|-.-..+--..|+.+.+-.++.+..+ ..-.++...+.+..+.....|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae---~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE---LAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 57888888877775542 233444444555667788888888877766 223445555666667777777888887
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC-----------hHHHHHHHHHHHhcCChhHHHHHH
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD-----------DFCLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
.-...+.+.+.. ++.+.....++|.+.|++.....++..+.+.. ..+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 777777776655 55566777777888888888887777776521 123444444444444444444444
Q ss_pred HhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 262 DRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 262 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
+..+. .++..-..++.-+.+.|+.++|.++.++..+.+..|...+ .-.+.+.++.+.-.+..++-.+.
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~----- 323 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ----- 323 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHh-----
Confidence 43332 2333444444444555555555555555444444443111 11223333333333333332222
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCC
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGS 416 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 416 (496)
.+.++..+.+|...|.+.+.+.+|...|+...+ |+..+|+.+.+++.+.|+
T Consensus 324 ---------------------------h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 324 ---------------------------HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE 376 (400)
T ss_pred ---------------------------CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 133344444555555555555555555554443 667777777777777777
Q ss_pred hhhHHHHHHHHHhC
Q 010961 417 PIEALDLFCNMNKL 430 (496)
Q Consensus 417 ~~~a~~~~~~m~~~ 430 (496)
+.+|.+..++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777765543
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.3e-10 Score=101.02 Aligned_cols=372 Identities=13% Similarity=0.057 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RN-CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---FSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~ 116 (496)
.+....+-|.++|.+++|+++|.+.++ || +.-|.....+|...|+|+++.+--.+..+-++ ..+..-.+++-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 445567778899999999999999886 77 77888899999999999999998888877443 3455555667777
Q ss_pred CChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHH--------HHHHHHHHHHH-chhccCCcCHHHHHHHHHHHHcc--
Q 010961 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR--------EAVRLFKELNS-DLVERLQCDAFILATVIGACADL-- 185 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~-~~~~~~~p~~~~~~~ll~~~~~~-- 185 (496)
|++++|+.-. +-.++...+-...-.- .|..-.++-.+ ++ ..+-|+.....+..+.+-..
T Consensus 197 g~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr-~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 197 GKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENR-PPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred ccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccC-CCCCCcHHHHHHHHhhcccccc
Confidence 8887775422 1112222221111111 11111111111 11 34566666555555444211
Q ss_pred ------c-----hHHHHHHHHHH------------HHHc----CCCcc-----------hhHHHHHHHHHHhcCChhhHH
Q 010961 186 ------A-----ALEYGKQIHSH------------ILVN----GLDFD-----------SVLGSSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 186 ------~-----~~~~a~~~~~~------------~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~a~ 227 (496)
+ ....+.+.+.. +.+. ...++ ..+.......+.-.|+.-.+.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 0 01111111111 1000 00000 011111111222345555555
Q ss_pred HHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 010961 228 QVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301 (496)
Q Consensus 228 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 301 (496)
.-|+.... | +...|-.+...|....+.++....|..... .++.+|..-...+.-.+++++|..=|++.+... +
T Consensus 347 ~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred hhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 55555443 1 122244445555555555555555554443 234455555555555555555555555555431 2
Q ss_pred CCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc-------hhh
Q 010961 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYD-------TIL 372 (496)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-------~~~ 372 (496)
.+...|..+.-+..+.+.++.++..|++..+. ++.-+.+|+.....+...++++.|.+.|+... +|+ +..
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 22333333333444555555555555555543 34445555555555555556666655555544 111 000
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHH
Q 010961 373 --LNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 373 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
--.++ .+.-.+++..|++++++..+-| ...|.+|...-.+.|+.++|+++|++-
T Consensus 505 lV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 505 LVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 00011 1112245555555555554422 234555555555555555555555543
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=2e-11 Score=114.99 Aligned_cols=265 Identities=12% Similarity=0.116 Sum_probs=137.3
Q ss_pred ccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHH
Q 010961 166 ERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALI 245 (496)
Q Consensus 166 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 245 (496)
.|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.+.+|..+.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL 90 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence 466666666666666666666666666 6666666666666666666666666666555443 45544444444
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHH
Q 010961 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ 325 (496)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 325 (496)
.+|...|+... .+..++ -...+...+...|.-.....++..+.-.
T Consensus 91 ~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~--------------------------- 135 (1088)
T KOG4318|consen 91 KAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCC--------------------------- 135 (1088)
T ss_pred HHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccC---------------------------
Confidence 44444444332 111111 0111112222222222222222221111
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH-hcCCHHHHHHHHhhCCC-CC
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS-SCGRIEDAKHIFRTMPN-KS 400 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~-~~ 400 (496)
.+..||.. ..+......|-++.+++++..+. ..++... .++-+. ....+++-........+ ++
T Consensus 136 -------p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~ 203 (1088)
T KOG4318|consen 136 -------PHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPT 203 (1088)
T ss_pred -------cccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCC
Confidence 11222222 12222333344444444444433 0111111 111111 12223333333333333 77
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
+.+|..++.+-...|+.+.|..++.+|++.|++.+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.
T Consensus 204 s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 204 SETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred hHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 777777777777778888888888888888877777777666655 66777777777777777888877777766666
Q ss_pred HHhcCChH
Q 010961 481 YCKCGFIK 488 (496)
Q Consensus 481 ~~~~g~~~ 488 (496)
+.+.|...
T Consensus 281 ~l~N~~t~ 288 (1088)
T KOG4318|consen 281 QLSNGQTK 288 (1088)
T ss_pred hhcchhhh
Confidence 55544433
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5.5e-09 Score=94.71 Aligned_cols=432 Identities=11% Similarity=0.063 Sum_probs=217.6
Q ss_pred HhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHH--HHHHHH--hcCC
Q 010961 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNA--MIEGFM--KLGH 87 (496)
Q Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--l~~~~~--~~~~ 87 (496)
+.-....+++++|......++..+ |+...++..=+-+..+.+.+++|+.+.+.-... .+++. +=.+|+ +.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 344445566666666666666655 222224444555566666666666544432211 11111 123333 5566
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc
Q 010961 88 KEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167 (496)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (496)
.++|+..++-..+.+..+...-...+.+.|++++|..+++.+.+.+...+...+.+-+..--.....++.+.. .
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v------~ 168 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV------P 168 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc------c
Confidence 6666666664444444455555555666666666666666666555554444443322211111111111111 1
Q ss_pred CCcCHHHHHHHH---HHHHccchHHHHHHHHHHHHHcC-------CCcch------h-HHHHHHHHHHhcCChhhHHHHH
Q 010961 168 LQCDAFILATVI---GACADLAALEYGKQIHSHILVNG-------LDFDS------V-LGSSLVNLYGKCGDFNSANQVL 230 (496)
Q Consensus 168 ~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~~~ 230 (496)
..| ..+|..+. ..+...|++.+|+++++...+.+ -.-+. . .-.-+...+...|+..+|.+++
T Consensus 169 ~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 169 EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 222 22333333 23445677777777776663211 00000 0 1122334455567777777766
Q ss_pred HhcCC---CChH----HHHHHHHHHHhcCChh-HHHHHHHhcCCCC--------------cchHH-HHHHHHHhCCCHHH
Q 010961 231 NMMKE---PDDF----CLSALISGYANCGKMN-DARRVFDRTTDTS--------------SVMWN-SMISGYISNNEDTE 287 (496)
Q Consensus 231 ~~~~~---~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--------------~~~~~-~l~~~~~~~~~~~~ 287 (496)
..+.+ +|.. .-|.++..-....-++ .++..++...... ....| .++..| .+..+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 66553 2211 1122221111111111 1112222111100 01111 111111 122222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHh--cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHH--
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACS--SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS-- 363 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-- 363 (496)
+.++-.... +..|. ..+..++..+. +......+..++...-+........+.-.+++.....|+++.|.+++.
T Consensus 326 ~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222221111 12232 33444444432 222456666666666554433345566677888889999999999888
Q ss_pred ------hcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC------CCh----hhHHHHHHHHHhCCChhhHHHHHH
Q 010961 364 ------ELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN------KSL----ISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 364 ------~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
.+. ...+.+...+...+.+.++-+.|..++.+..+ +.. ..+..+...-.+.|+.++|..+++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 333 34566777788888888887777777766542 122 234444445557799999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
++.+.. ++|..+...++.+|++. |++.|..+-+.
T Consensus 483 el~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 483 ELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999864 78888999999998874 67777766553
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=1.2e-07 Score=87.03 Aligned_cols=291 Identities=13% Similarity=0.130 Sum_probs=147.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHc
Q 010961 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQ-----KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRN 147 (496)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 147 (496)
..|-.-++.+.++|++..-...|++... ....+|...+......|-++-+.+++++-.+-++..-+..|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4566666666777777777777766554 23445666666666677777777777777766666677777777777
Q ss_pred CCHHHHHHHHHHHHHchh---ccCCcCHHHHHHHHHHHHccchHH---HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 010961 148 GFAREAVRLFKELNSDLV---ERLQCDAFILATVIGACADLAALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (496)
+++++|-+.+.....+.. ...+.+...|..+....++..+.- ...++++.+...-..-=...+.+|.+.|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 777777777766643210 011222333443333333332221 12223332222111111235667777777777
Q ss_pred ChhhHHHHHHhcCC--CChHHHHHHHHHHHh----------------cC------ChhHHHHHHHhcCCCC---------
Q 010961 222 DFNSANQVLNMMKE--PDDFCLSALISGYAN----------------CG------KMNDARRVFDRTTDTS--------- 268 (496)
Q Consensus 222 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~----------------~~------~~~~a~~~~~~~~~~~--------- 268 (496)
.+++|..+|++... -.+.-++.+.++|+. .+ +++-...-|+.+...-
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 77777777766543 112222222222211 01 1222233333332211
Q ss_pred ------cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC
Q 010961 269 ------SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED------ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336 (496)
Q Consensus 269 ------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 336 (496)
+..|..-. -+..|+..+-...|.+..+. +.|. ...+..+.+.|...|+++.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 11222111 12345555556666665543 2221 123455556666677777777777766665433
Q ss_pred ch---HHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 337 DD---VIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 337 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
.- ..+|..-...-.+..+++.|+++.+...
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 21 3344444444455556666666665544
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.1e-08 Score=84.29 Aligned_cols=414 Identities=13% Similarity=0.022 Sum_probs=235.7
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHH
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKE 89 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 89 (496)
.-+...+++..|..+++.-...+-..... +-.=+...+.+.|++++|...+..+.+ ++...+-.|.-+..-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~-~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDS-LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHH-HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 34455677888888888777655443333 444466777788999999998887764 45566667777777778888
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcC------------------------------ChhHHHHHHhhcCC--CCcccH
Q 010961 90 KSLQLFNVMPQKNDFSWNMLISGFAKAG------------------------------ELKTARTLFNDMPR--RNAIAW 137 (496)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------~~~~a~~~~~~~~~--~~~~~~ 137 (496)
+|..+-.+..+ ++..-..++..-.+.+ .+++|++++.++.. |+....
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 88888776654 1111122222223333 34444555444443 222222
Q ss_pred HH-HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHH
Q 010961 138 NS-MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNL 216 (496)
Q Consensus 138 ~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (496)
|. +.-+|.+..-++-+.+++.-..++ ++.+....+..+....+.=+-..+++-.+.+...+-.. | ..+.-
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~ 258 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEY 258 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHH
Confidence 22 222334444444444444444431 22222222222222222212222222222222221110 0 01111
Q ss_pred HHhc-----CChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCC-------
Q 010961 217 YGKC-----GDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNE------- 284 (496)
Q Consensus 217 ~~~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 284 (496)
.++. .+-+.|++++-.+.+.-+..--.++--|.+.+++.+|..+.+.+...++.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 1111 2234455544444433334444566668899999999999988877555544333333344333
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHH
Q 010961 285 DTEALLLFHKMRRNGVLEDAS-TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFS 363 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 363 (496)
..-|.+.|+..-.++..-|.. --..+.+++.-..+++.+..++..+...=...|...+ .+.++++..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 445666666555554333221 1233444555566788888888887776555555544 47889999999999999998
Q ss_pred hcccC---chhhHHH-HHHHHHhcCCHHHHHHHHhhCCCCCh-hh-HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH
Q 010961 364 ELKVY---DTILLNT-MITVYSSCGRIEDAKHIFRTMPNKSL-IS-WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437 (496)
Q Consensus 364 ~~~~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 437 (496)
.+..| |..+|.+ |.++|.+.++.+.|.+++-.+..|.. .+ ...+...|.+.+.+--|-+.|+.+... .|++.
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pE 495 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPE 495 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcc
Confidence 88733 4556654 56788899999999999888877643 33 344456788888888888888888875 56655
Q ss_pred HHH
Q 010961 438 SLA 440 (496)
Q Consensus 438 ~~~ 440 (496)
.|.
T Consensus 496 nWe 498 (557)
T KOG3785|consen 496 NWE 498 (557)
T ss_pred ccC
Confidence 554
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.9e-12 Score=80.20 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888888888888888888777764
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4.2e-12 Score=78.69 Aligned_cols=50 Identities=30% Similarity=0.519 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010961 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 316 (496)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999998874
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=6.1e-08 Score=89.11 Aligned_cols=439 Identities=13% Similarity=0.038 Sum_probs=201.6
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQ 93 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 93 (496)
..+++.......+.+++..+.+.. +.....--+...|+.++|......-.+ .+.++|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 344566666666666663322222 333333334455666666666655544 234556666666666666666666
Q ss_pred HHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc
Q 010961 94 LFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167 (496)
Q Consensus 94 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (496)
.|+.... .|...+.-+.-.-+..|+++.....-....+ .....|..+..++.-.|+...|..++++..+.- .
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~--~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ--N 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c
Confidence 6666544 3344444444444455555555555444443 233455566666666666666666666666531 1
Q ss_pred CCcCHHHHHHHHHHH------HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChH
Q 010961 168 LQCDAFILATVIGAC------ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDF 239 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 239 (496)
..|+...+......+ ...|.++.+.+.+..-...-+. ....-..-...+.+.+++++|..++..+.. ||..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 234444443332221 2333444444333332221100 111112233344444555555555555443 2222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEAL-LLFHKMRRNGVLEDASTLASVLSACSSLG 318 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 318 (496)
.|... +..++.+-.+.-+++ .+|....+.- +-....-..=+.......
T Consensus 254 ~Yy~~------------------------------l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 254 DYYEG------------------------------LEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEE 302 (700)
T ss_pred HHHHH------------------------------HHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcch
Confidence 22221 222222111111111 3333332220 000000000011111111
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHH-------------HHHHhcCChhhHHHHHHh--cccCchh--hHHHHHHHHH
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALL-------------DTYSKRGMPSDACKLFSE--LKVYDTI--LLNTMITVYS 381 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~a~~~~~~--~~~~~~~--~~~~l~~~~~ 381 (496)
-.+..-.++....+.|+++-.....++- ..|...-.........+. ..+|.+. ++-.++..+-
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 2222333444444444433211111111 111110000000000000 1133333 3445667777
Q ss_pred hcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLI---SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
..|+++.|+..++......+. -|..=.+.+...|++++|..++++..+.. .||...=..-..-..++.+.++|..+
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHH
Confidence 888888888888887764433 34444577778888888888888888765 55655444555556677888888888
Q ss_pred HHHHHHcCCCc--hH----HHHH--HHHHHHHhcCChHHHHH
Q 010961 459 FARVTIIGLDS--DQ----IIST--SLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 459 ~~~~~~~~~~~--~~----~~~~--~l~~~~~~~g~~~~A~~ 492 (496)
.....+.|... +. -+|- .=.++|.+.|++.+|.+
T Consensus 462 ~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 462 LSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred HHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 88776665410 10 1111 12345667777766654
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=6.6e-10 Score=96.07 Aligned_cols=190 Identities=13% Similarity=0.044 Sum_probs=104.0
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3466777778888888888888888877653 3345566666777777788888888887777654 3344556666777
Q ss_pred HHhcCChhhHHHHHHhccc-----CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhH
Q 010961 349 YSKRGMPSDACKLFSELKV-----YDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a 420 (496)
+...|++++|.+.+++... .....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776541 1122333334444444444444444444332 1 122333444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
...+++..+. .+.+...+..+...+...|+.+.|..+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444433 122333333333444444444444444333
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=9.9e-10 Score=94.93 Aligned_cols=188 Identities=16% Similarity=0.041 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHH
Q 010961 304 ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVY 380 (496)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 380 (496)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555556666666666666666665543 2334555556666666666666666666555 33344555566666
Q ss_pred HhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhH
Q 010961 381 SSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
...|++++|.+.+++..+ .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666543 122345555566666666666666666665542 22344556666666666666666
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 456 EQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
...+++..+. .+.+...+..+...+...|+.++|..+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666554 2334455555566666666666666553
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=4.3e-08 Score=92.15 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
=.++|.++++-+.+.+.. +..++..-.+.|.|.|++--|.+-+.
T Consensus 472 PLe~A~kfl~pL~~~a~~-~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPD-NIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred HHHHHHHHHHHHHHhCcc-chhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 457799999988887654 77889999999999999988887664
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=9e-08 Score=87.09 Aligned_cols=414 Identities=12% Similarity=0.046 Sum_probs=247.0
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhcc-CCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFM 83 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 83 (496)
...+..-+-++.+.+.++.|..+. .+.+. .....-.|. =+-+..+.+..++|+..++...+.+..+...-.+.+-
T Consensus 46 ~~a~~cKvValIq~~ky~~ALk~i---kk~~~~~~~~~~~fE-KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlY 121 (652)
T KOG2376|consen 46 EDAIRCKVVALIQLDKYEDALKLI---KKNGALLVINSFFFE-KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLY 121 (652)
T ss_pred HhhHhhhHhhhhhhhHHHHHHHHH---HhcchhhhcchhhHH-HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 345555566777788888887333 23332 111210122 2233447899999999999776667778888888999
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHH-hcCChhHHHHHHhhcCCCCcccHHHHH---HHHHHcCCHHHHHHHHHH
Q 010961 84 KLGHKEKSLQLFNVMPQKNDFSWNMLISGFA-KAGELKTARTLFNDMPRRNAIAWNSMI---HCYVRNGFAREAVRLFKE 159 (496)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~ 159 (496)
+.|++++|.++|+.+.+.+...+..-+++-+ ..+-.-.+. +.+..+.....+|..+. ..++..|++.+|+++++.
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999998755555544433211 112222222 45555554344555444 456778999999999998
Q ss_pred HHHchhc----------cCCcCHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhH----HHHHHHHHHhcCChh
Q 010961 160 LNSDLVE----------RLQCDAF-ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL----GSSLVNLYGKCGDFN 224 (496)
Q Consensus 160 ~~~~~~~----------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~ 224 (496)
..+.+.. ++.-+.. .-..+.-++...|+.++|..++...++.... |... -|.|+..-....-++
T Consensus 201 A~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d 279 (652)
T KOG2376|consen 201 ALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFD 279 (652)
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCc
Confidence 8322110 1111111 1223445667889999999999999987654 4322 233333222222122
Q ss_pred -hHHHHHHhcCCCCh-------------HHHHHHHHHHHhcCChhHHHHHHHhcCCCC-cchHHHHHHHHH--hCCCHHH
Q 010961 225 -SANQVLNMMKEPDD-------------FCLSALISGYANCGKMNDARRVFDRTTDTS-SVMWNSMISGYI--SNNEDTE 287 (496)
Q Consensus 225 -~a~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ 287 (496)
.++..++....... ..+........-.+..+.+.++........ ...+.+++.... +...+.+
T Consensus 280 ~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~k 359 (652)
T KOG2376|consen 280 GDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKK 359 (652)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhh
Confidence 12222222221111 111122222233455566666666655533 334445544332 2235777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHH--------HHHHcCCCchHHHHHHHHHHHHhcCChhhHH
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHG--------HACKVGVIDDVIVASALLDTYSKRGMPSDAC 359 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 359 (496)
+..++...-+....-...+.-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|.
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~ 437 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSAS 437 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHH
Confidence 88888777665222223445555666788999999999999 555554444 45567778888888877787
Q ss_pred HHHHhcc------cCchhhH----HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 360 KLFSELK------VYDTILL----NTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 360 ~~~~~~~------~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
.++++.. .+..... .-+...-.+.|+.++|..+++++.+ ++..+...++.+|++. +++.|..+-+.
T Consensus 438 ~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 438 AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 7777665 2222333 3333444567999999999999986 5777888899998875 57777776554
Q ss_pred H
Q 010961 427 M 427 (496)
Q Consensus 427 m 427 (496)
+
T Consensus 517 L 517 (652)
T KOG2376|consen 517 L 517 (652)
T ss_pred C
Confidence 3
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=1.1e-09 Score=106.23 Aligned_cols=206 Identities=17% Similarity=0.032 Sum_probs=105.7
Q ss_pred hhHHHHHHHhcCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 254 MNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 254 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
+++|...+++..+. +..++..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455555444431 23445555555556666666666666665542 223444555555566666666666666666
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cC-chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Chhh
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLIS 403 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 403 (496)
.+.... +...+..++..+...|++++|...+++.. +| ++..+..+..++...|+.++|...+.++.. | +...
T Consensus 399 l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 399 LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 655322 11222223333444566666666666553 12 233455555666666666666666666543 2 2234
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.+.+...|+..| +.|...++++.+. +-.|....+ +-..+.-.|+.+.+..+ +.+.+.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 445555666666 3666666665542 112322223 22334445666655554 6665543
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=1.4e-07 Score=86.76 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=152.8
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHH
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGF 82 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 82 (496)
+++....-.+.-.|+-++|.......++.++...+ .|+.+.-.+....++++|+++|..... .|...|.-+.-.-
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v--CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV--CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccch--hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33333333344567889999998888887654333 677777777777899999999998764 5677888887777
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC-----CCcccHHHHH------HHHHHcC
Q 010961 83 MKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR-----RNAIAWNSMI------HCYVRNG 148 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li------~~~~~~~ 148 (496)
++.|+++.....-.+..+ .....|..++.+..-.|+...|..+++...+ ++...|.... ....+.|
T Consensus 120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g 199 (700)
T KOG1156|consen 120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG 199 (700)
T ss_pred HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 888999888888777766 3445677888888888999999998887653 3444444333 3456788
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-cCChhhHH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-CGDFNSAN 227 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~ 227 (496)
.+++|++.+..-... +.-....-.+-...+.+.++.++|..++..++...+. +...|..+..++.+ .+......
T Consensus 200 ~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 200 SLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred cHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999988776652 2222233344456788999999999999999987533 34444455555543 33333333
Q ss_pred HHHHhcC
Q 010961 228 QVLNMMK 234 (496)
Q Consensus 228 ~~~~~~~ 234 (496)
.+|....
T Consensus 275 ~ly~~ls 281 (700)
T KOG1156|consen 275 ALYAILS 281 (700)
T ss_pred HHHHHHh
Confidence 6665554
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=7.1e-08 Score=90.68 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=67.8
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc---CchhhHHHHHHHHHhcC
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---YDTILLNTMITVYSSCG 384 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 384 (496)
..+...|...|++++|.++++..+++. +..+..|..-...+-+.|++.+|.+.++.... .|..+-+-.+..+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 344445556666666666666666653 22245555566666666666666666665552 23334444555566666
Q ss_pred CHHHHHHHHhhCCCCCh------------hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 385 RIEDAKHIFRTMPNKSL------------ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 385 ~~~~a~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
++++|.+++....+++. ....-...+|.+.|++..|++.|....+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666665554331 1122345666677777776665555443
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=4.5e-09 Score=97.39 Aligned_cols=223 Identities=16% Similarity=0.131 Sum_probs=140.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCCCHHHHH-HHHHHHhcccchhhHHHHHHHHHHc-----C--CCch
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRN-----G-VLEDASTLA-SVLSACSSLGFLEHGKQVHGHACKV-----G--VIDD 338 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~ 338 (496)
..+...|...|+++.|..+++...+. | ..|...+.. .+...|...+++.+|..+|+.+... | .+.-
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33555555566666665555554432 1 122222222 2444555666666666666665431 2 1112
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc----------cCch-hhHHHHHHHHHhcCCHHHHHHHHhhCC-------CC-
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK----------VYDT-ILLNTMITVYSSCGRIEDAKHIFRTMP-------NK- 399 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~- 399 (496)
..+++.|..+|.+.|++++|...+++.. .+.. ..++.+...+...+++++|..+++... .+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 3345556666666777666666555443 1111 134555666667777777766666543 22
Q ss_pred C---hhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHhccCchhhHHHHHHHHH----Hc
Q 010961 400 S---LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DL--RM-DKFSLASVISACANISSLELGEQVFARVT----II 465 (496)
Q Consensus 400 ~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~ 465 (496)
+ ..+++.|...|.+.|++++|.+++++.... +. .+ ....++.+...|.+.+.++.|.++|.+.. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2 247889999999999999999999987652 11 22 24578889999999999999999998543 34
Q ss_pred CCC-c-hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 466 GLD-S-DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 466 ~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
|.. | ...+|..|...|.+.|++++|.++.+
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 432 2 34788899999999999999998864
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.3e-07 Score=78.60 Aligned_cols=279 Identities=10% Similarity=0.056 Sum_probs=155.2
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.++...|...+-.+... ..++-|......+.+.+...|+.+.+...|+.....++. +........-.+.+.|+.+..
T Consensus 209 ~~~hs~a~~t~l~le~~--~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDN--TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred hcccchhhhHHHHHHhh--ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 34444444444333332 235556666667777777777777777777766544321 122222223334556666666
Q ss_pred HHHHHhcCCCC---hHHHHHHHHHHHhcCChhHHHHHHHhcCCCCc---chHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010961 227 NQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDRTTDTSS---VMWNSMISGYISNNEDTEALLLFHKMRRNGV 300 (496)
Q Consensus 227 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 300 (496)
..+...+...+ ...|-.-.......++++.|+.+-++.++.++ ..|-.-...+...+++++|.-.|+..+...
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 66555544322 23343344445556667777777766665433 333333456667777777777777666531
Q ss_pred CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHH-HHHHh-cCChhhHHHHHHhcccCch---hhHHH
Q 010961 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL-DTYSK-RGMPSDACKLFSELKVYDT---ILLNT 375 (496)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~---~~~~~ 375 (496)
+-+...|..|+.+|...|.+.+|...-+...+. ++.+..+.+.+. ..+.- ...-++|.+++++....++ ...+.
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 345667777777777777777776665554432 122333333221 11111 1223566666666552222 23445
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+...+...|..+.++.++++... +|....+.|.+.+...+.+.+|++.|......
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55566666777777777776553 66667777777777777777777777766654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=6.1e-09 Score=101.17 Aligned_cols=238 Identities=14% Similarity=0.037 Sum_probs=149.3
Q ss_pred chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH---------hcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCC
Q 010961 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG---------KCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGK 253 (496)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 253 (496)
++.+.|...+++..+..+. +...+..+..++. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4566777777777665433 3344444444333 22346677777777664 3 35566666677777777
Q ss_pred hhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccchhhHHHHHHH
Q 010961 254 MNDARRVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSSLGFLEHGKQVHGH 329 (496)
Q Consensus 254 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 329 (496)
+++|...|++..+ | +...+..+...+...|++++|+..+++..+.. |+ ...+..++..+...|++++|...+.+
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888777655 3 24467777778888888888888888887753 33 22233334445567788888888888
Q ss_pred HHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh
Q 010961 330 ACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSL 401 (496)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~ 401 (496)
+.+...+.++..+..+..++...|+.++|...+.++.+.+ ....+.+...|...| +.|...++.+.+ +..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 7765433345556677777888888888888888776322 233445555566666 466666666543 222
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 431 (496)
..+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222 44455666777766665 8777764
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=2.6e-07 Score=86.29 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=149.8
Q ss_pred HHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHH
Q 010961 247 GYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326 (496)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 326 (496)
.+...|+++.|...|-+. ....-.+.+.....+|.+|+.+++.++... .-..-|..+...|+..|+++.|+++
T Consensus 715 hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHH
Confidence 344556666666655432 122234456677889999999999888763 2334577788899999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC--chhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY--DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (496)
|-+. ..++--|.+|.+.|+|..|.++-.+...| ....|.+-..-+-+.|++.+|++++-.+..|+..
T Consensus 788 f~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-- 856 (1636)
T KOG3616|consen 788 FTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-- 856 (1636)
T ss_pred HHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH--
Confidence 8643 23566788999999999999999888754 4456666667788999999999999999888753
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484 (496)
Q Consensus 405 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 484 (496)
|..|-+.|..+..+++.++-... --..|...+..-+-..|+...|..-|-+..+ |.+-+++|...
T Consensus 857 ---iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s 921 (1636)
T KOG3616|consen 857 ---IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKAS 921 (1636)
T ss_pred ---HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhh
Confidence 57788899988888877753321 1234566666677778888888776654422 23344555555
Q ss_pred CChHHHHHh
Q 010961 485 GFIKMDEYY 493 (496)
Q Consensus 485 g~~~~A~~~ 493 (496)
+.+++|-++
T Consensus 922 ~lw~dayri 930 (1636)
T KOG3616|consen 922 ELWEDAYRI 930 (1636)
T ss_pred hhHHHHHHH
Confidence 556655544
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1e-09 Score=92.09 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=159.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccc
Q 010961 242 SALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL-ASVLSACSSLG 318 (496)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~ 318 (496)
+.+.++|.+.|.+.+|.+.|+...+ |-+.||..+-+.|.+..++..|+.++.+-.+. .|..+|| ....+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888888888888888887654 56778888888888888888888888887764 4544444 44555667778
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRT 395 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (496)
+.+.|.++++...+.. +.++.....+...|.-.++++-|+..|+++. ..++..|+.+.-+|.-.+++|-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888887754 4455555566667777788888888888776 45667777777777777777777777666
Q ss_pred CCC----CCh--hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 396 MPN----KSL--ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 396 ~~~----~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
... |+. .+|-.+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|+++.|..++....+.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 542 332 456667777777788887877777777653 334567777777777778888888777776553
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.2e-09 Score=91.57 Aligned_cols=217 Identities=13% Similarity=0.028 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchH-HHHHHHHHhCCCH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMW-NSMISGYISNNED 285 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~ 285 (496)
+-+..+|.+.|.+.+|.+.|+...+ |-+.||-.+-+.|.+..+.+.|+.+|.+..+ |..+|| .-+.+.+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 3445555555555555555544332 4444555555555555555555555555444 222222 2233344444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
++|.++|+...+.. +.+......+...|.-.++++.|..+++.+++.|+ .++..|+.+.-+|.-.++++-++..|++.
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 55555555554431 23333333344444444555555555555555552 23444444444444455555555544444
Q ss_pred c----cCc--hhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 366 K----VYD--TILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 366 ~----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
. .|+ ...|-.+.......|++..|.+.|+-.... +..++|.|.-.-.+.|+++.|..++.....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 3 111 223444444444455555555555544432 223445554444555555555555554444
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.2e-06 Score=83.06 Aligned_cols=180 Identities=12% Similarity=0.073 Sum_probs=86.7
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLGHKEKSLQLF 95 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 95 (496)
..|.+++|..+|.+..+.+ . |=+.|...|.+++|.++-+.-.+ .-..+|..-..-+-..++.+.|++.|
T Consensus 812 eLgMlEeA~~lYr~ckR~D-------L---lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD-------L---LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH-------H---HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3456666666666665543 2 22345556777777666554332 22345555556666667777777777
Q ss_pred hhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHH
Q 010961 96 NVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFIL 175 (496)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~ 175 (496)
++...+-...+..|. .++...+.+.+++.++ ..|.-....+-..|+.+.|+.+|...+. |
T Consensus 882 EK~~~hafev~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D------------~ 941 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD------------Y 941 (1416)
T ss_pred HhcCChHHHHHHHHH------hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh------------h
Confidence 766543322222221 1222333333333322 2333333444445666666666655543 3
Q ss_pred HHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 176 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
..+++..+-.|+.++|-++-++- | |....-.|.+.|-..|++.+|..+|-+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44444444445555444443321 1 223333444444444444444444433
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.3e-06 Score=74.74 Aligned_cols=295 Identities=11% Similarity=-0.042 Sum_probs=202.5
Q ss_pred CCcCHHHHHHHHHHHHc--cchHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHH--
Q 010961 168 LQCDAFILATVIGACAD--LAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS-- 242 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 242 (496)
+.|...+....+.+++. .++...+...+-.+.. .-++-|......+..++...|+.++|.-.|++....|+.+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 44555555555655543 3333334444333333 335557788899999999999999999999988765444332
Q ss_pred -HHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 010961 243 -ALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318 (496)
Q Consensus 243 -~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 318 (496)
...-.+.+.|+.+....+...+...+ ...|-.-........++..|+.+-++.++.. +-+...|..-...+...|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 23344567777777777766655432 3345445555667788999999888887653 223344444445677889
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHH-HHHH-hcCCHHHHHHHH
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMI-TVYS-SCGRIEDAKHIF 393 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~-~~~~-~~~~~~~a~~~~ 393 (496)
+.++|.-.|+...... +.+..+|..|+.+|...|++.+|.-+-+... +.+..+...+. ..+. .-.--++|.+++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999999998887653 4678899999999999999999887766543 33333333331 1221 222357888888
Q ss_pred hhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 394 RTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 394 ~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
++..+ |+. ...+.+...+...|..++++.++++.... .||....+.|.+.+...+.+.+|...|....+.+
T Consensus 428 ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 428 EKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88775 443 35666777888899999999999988874 8899999999999999999999999998887654
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=1.5e-07 Score=88.31 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP 99 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (496)
+|..|.-+....|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-.
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 555555555555555555555555443 233445555555555555555555555443
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=7.7e-07 Score=86.07 Aligned_cols=247 Identities=15% Similarity=0.111 Sum_probs=173.9
Q ss_pred cCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010961 220 CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 299 (496)
.+..++|.++-++..+|. .|+.+..+-.+.|.+.+|++-|-+..+ +..|.-++....+.|.+++-.+++...++..
T Consensus 1088 i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyikadD--ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKADD--PSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhcCC--cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 355666666666665554 788888888888888888887765544 5578888888888888888888887777766
Q ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHH
Q 010961 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITV 379 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 379 (496)
-.|... +.|+-+|++.+++.+.++++ .-|+..-...+.+-|...|.++.|.-+|. +...|..|...
T Consensus 1164 ~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1164 REPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLAST 1229 (1666)
T ss_pred cCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHH
Confidence 566554 35777788888777666554 24666666777777888888888877776 34567778888
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
+...|++..|...-++. .+..+|...-.+|...+.+.-| +|...++-....-+..++.-|...|-+++...++
T Consensus 1230 LV~LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 88888888887655543 4667888888888776665433 4454445556677888999999999999988888
Q ss_pred HHHHHcCCC-chHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 460 ARVTIIGLD-SDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 460 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
+... |+. .....|+-|.-.|.|-. .++.++.+
T Consensus 1303 Ea~L--GLERAHMgmfTELaiLYskyk-p~km~EHl 1335 (1666)
T KOG0985|consen 1303 EAGL--GLERAHMGMFTELAILYSKYK-PEKMMEHL 1335 (1666)
T ss_pred Hhhh--chhHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 7553 332 24567777777776543 44444443
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=4.2e-08 Score=91.06 Aligned_cols=244 Identities=17% Similarity=0.128 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchh--cc-CCcCHHHH-HHHHHHHHccchHHHHHHHHHHHHHc-----CCC-c
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLV--ER-LQCDAFIL-ATVIGACADLAALEYGKQIHSHILVN-----GLD-F 205 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 205 (496)
+...+...|...|++++|..+++...+... .| ..|...+. +.+...|...+++++|..+|+.+..- |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 455577888888888888888887766200 01 12222222 22444555555566555555555431 111 1
Q ss_pred -chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CC-cchHHHHHHHHH
Q 010961 206 -DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD---TS-SVMWNSMISGYI 280 (496)
Q Consensus 206 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~~l~~~~~ 280 (496)
-..+++.|..+|.+.|++++|...++... +++++..- +. ...++.+...+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------EIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHH------------------------HHHHHhhccChHHHHHHHHHHHHHHH
Confidence 12234444445555555555544443322 11111000 11 123455555666
Q ss_pred hCCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhcccchhhHHHHHHHHHHc----CC---CchHHHHHHHH
Q 010961 281 SNNEDTEALLLFHKMRRN---GVLED----ASTLASVLSACSSLGFLEHGKQVHGHACKV----GV---IDDVIVASALL 346 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~---g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~ 346 (496)
..+++++|..++....+. -+.++ ..+++.+...|...|++++|.++++.++.. +. .-....++.+.
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 667777776666654331 01111 234555555566666666666666555432 11 11123445555
Q ss_pred HHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh-hhHHHHHHHHHhCCChhhHHH
Q 010961 347 DTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSL-ISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~l~~~~~~~g~~~~a~~ 422 (496)
..|.+.++..+|.++|.+. ..+. .... |++ .+|..|...|.+.|++++|.+
T Consensus 417 ~~~~~~k~~~~a~~l~~~~------------------------~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEA------------------------KDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHhcccchHHHHHHHH------------------------HHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 5555555555555555532 1222 1112 332 467788888888888888888
Q ss_pred HHHHHH
Q 010961 423 LFCNMN 428 (496)
Q Consensus 423 ~~~~m~ 428 (496)
+.+...
T Consensus 472 ~~~~~~ 477 (508)
T KOG1840|consen 472 LEEKVL 477 (508)
T ss_pred HHHHHH
Confidence 877654
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=2.3e-07 Score=89.55 Aligned_cols=456 Identities=13% Similarity=0.029 Sum_probs=260.2
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--
Q 010961 29 LHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-- 103 (496)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 103 (496)
..+....+.++-.++|..|...|+...+...|.++|+...+- +..++..+...|++..+++.|..+.-...+.+.
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~ 559 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF 559 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence 333344455676679999999999999999999999998773 567788899999999999999998555444221
Q ss_pred ---hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHH
Q 010961 104 ---FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177 (496)
Q Consensus 104 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 177 (496)
..|....-.|...++..+|...|+.... .|...|..+..+|.+.|++..|+++|.+... +.|+...-.-
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-----LrP~s~y~~f 634 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-----LRPLSKYGRF 634 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-----cCcHhHHHHH
Confidence 2233344456788899999999998875 3667888999999999999999999998877 6676532111
Q ss_pred -HHHHHHccchHHHHHHHHHHHHHcC------CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-----------CChH
Q 010961 178 -VIGACADLAALEYGKQIHSHILVNG------LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----------PDDF 239 (496)
Q Consensus 178 -ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~ 239 (496)
..-.-+..|.+.++...++...... ...-..++..+...+...|-..++..++++-.+ .+..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 1223356788888888887765421 111112222222222233333334443333221 1222
Q ss_pred HHHHHHHHHH-----------------------hcCCh---h---HHHHHHHhcCC--CCcchHHHHHHHHHh----C--
Q 010961 240 CLSALISGYA-----------------------NCGKM---N---DARRVFDRTTD--TSSVMWNSMISGYIS----N-- 282 (496)
Q Consensus 240 ~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~--~~~~~~~~l~~~~~~----~-- 282 (496)
.|-.+-.+|. ..+.. + -+.+.+-.... .++.+|..++..|.+ .
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 2222221111 11111 0 01111110000 124455555544443 1
Q ss_pred --CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHH
Q 010961 283 --NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360 (496)
Q Consensus 283 --~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 360 (496)
.+...|+..++...+. ..+...+-..+......|++.-+...|-.-.... +....+|..+.-.+....+++.|..
T Consensus 795 t~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhH
Confidence 1223566666665543 3333333334444455566666665555444332 3344566666666777788888888
Q ss_pred HHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC-----C---CChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 361 LFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP-----N---KSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 361 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.|.... +.|...|-.........|+.-++..+|..-. + ++..-|-........+|+.++-+...+++-.
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 887776 4455555555555556777777777776521 1 3444444444445556665554444443322
Q ss_pred ---------CCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc-CCCchHHHHH----HHHHHHHhcCChHHHHH
Q 010961 430 ---------LDLRMDKFSLASVISACANISSLELGEQVFARVTII-GLDSDQIIST----SLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 430 ---------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~ 492 (496)
.|.+.+.+.|.......-+.+.++.|..+..+.+.. ..+.|...|+ .+...++..|.++.|..
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 133445566777666666777777777666654321 1122333333 44555666677776654
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.8e-08 Score=80.78 Aligned_cols=183 Identities=12% Similarity=0.047 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCChHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCC
Q 010961 45 NRLLQMYMRCGNPTDALLLFDEMPRRN---CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGE 118 (496)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 118 (496)
..|.-.|...|+...|..-+++..+.| ..+|..+...|.+.|..+.|.+-|++... .+..+.|.....+|..|+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 344445555555555555555555422 23444555555555555555555555543 233445555555555555
Q ss_pred hhHHHHHHhhcCC-C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHH
Q 010961 119 LKTARTLFNDMPR-R----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGK 192 (496)
Q Consensus 119 ~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 192 (496)
+++|...|++... | -..+|..+.-+..+.|+++.|.+.|++..+ ..| ...+...+.+.....|++-.|.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~-----~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE-----LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH-----hCcCCChHHHHHHHHHHhcccchHHH
Confidence 5555555555443 2 233555555555555555555555555554 222 2234445555555555555555
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
..++.....+. ++....-..|+.-...|+.+.+.++=..+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55555555444 45555545555555555555555444333
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=4.7e-08 Score=78.42 Aligned_cols=192 Identities=11% Similarity=0.003 Sum_probs=136.6
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
.+...+.-.|...|++..|..-+++..+.. +-+..++..+...|.+.|..+.|.+-|+...+.. +.+..+.|...-.+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 355666678888888888888888888763 4445567777777888888888888888887764 44566777777788
Q ss_pred HhcCChhhHHHHHHhcc-cC----chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHH
Q 010961 350 SKRGMPSDACKLFSELK-VY----DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
|..|++++|...|++.. .| .+.+|..+..+..+.|+.+.|...|++..+ | ...+.-.+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888888766 22 345677777777777777777777777665 2 3345666677777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..+++....+. ++...+...|+.-.+.||.+.+-++=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777776653 7777777777777777777666655444443
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=4e-06 Score=78.66 Aligned_cols=309 Identities=14% Similarity=0.164 Sum_probs=200.8
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhC--CCCChhhHHHHHHHHHhcCC
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEM--PRRNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 87 (496)
+.++++...|+-+.|-++ .... .+. .+.++.|.+.|.+.+|.+....- ...|......+..++.+..-
T Consensus 594 sy~q~l~dt~qd~ka~el----k~sd--gd~----laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~el 663 (1636)
T KOG3616|consen 594 SYLQALMDTGQDEKAAEL----KESD--GDG----LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGEL 663 (1636)
T ss_pred HHHHHHHhcCchhhhhhh----cccc--Ccc----HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHH
Confidence 345667777777766543 1111 122 25689999999999988765432 23566677777777777777
Q ss_pred HHHHHHHHhhCCCCChh--------hHHHH-------------------HHHHHhcCChhHHHHHHhhcCCCCcccHHHH
Q 010961 88 KEKSLQLFNVMPQKNDF--------SWNML-------------------ISGFAKAGELKTARTLFNDMPRRNAIAWNSM 140 (496)
Q Consensus 88 ~~~a~~~~~~~~~~~~~--------~~~~l-------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 140 (496)
+++|-++|+++..++.. .|... ..-+...|+++.|...|-+.. ..-..
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~ka 738 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKA 738 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHH
Confidence 77777787777664431 00000 011122233333333332211 12233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (496)
+.+-.....|.+|+.+++.+.. .+....-|..+..-|+..|+++.|+++|.+. ..++..+..|.+.
T Consensus 739 ieaai~akew~kai~ildniqd-----qk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQD-----QKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhh-----hccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcc
Confidence 4555667788888888887765 3334455777778888999999999888543 2356678889999
Q ss_pred CChhhHHHHHHhcCCCCh--HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 221 GDFNSANQVLNMMKEPDD--FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
|+|+.|.++-++...|.. ..|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..+++..+-..
T Consensus 805 ~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~- 878 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG- 878 (1636)
T ss_pred ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh-
Confidence 999999999888876653 4455555667788999999999888877764 56778888998888888765432
Q ss_pred CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 299 GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 299 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
..-..|-..+..-+...|++..|+.-|-+..+ |.+-+++|...+.|++|.++-+.
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 12234555666677788888888877654432 44556667777777777666553
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.08 E-value=9.2e-07 Score=83.29 Aligned_cols=387 Identities=15% Similarity=0.099 Sum_probs=219.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHH
Q 010961 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILA 176 (496)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~ 176 (496)
.|...|..+.-++.+.|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-... .-.|+ ...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~---~~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK---SEQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc---ccCCCcchHHH
Confidence 4566666777777777777777777777654 23456777777777777777777777766552 11243 33344
Q ss_pred HHHHHHH-ccchHHHHHHHHHHHHHc--C--CCcchhHHHHHHHHHHhc-----------CChhhHHHHHHhcCC---CC
Q 010961 177 TVIGACA-DLAALEYGKQIHSHILVN--G--LDFDSVLGSSLVNLYGKC-----------GDFNSANQVLNMMKE---PD 237 (496)
Q Consensus 177 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~---~~ 237 (496)
..-+.|. +.+..+++..+-.++... + -...+..|..+.-+|... ....++...+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444 445666666555555541 1 112233344444444321 123556666666643 22
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLS 312 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~ 312 (496)
+...-.+.--|+..++.+.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+..... |. |......-++
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 33333344446667777777777766554 34567777777777777777777777665442 11 0000000011
Q ss_pred HHhcccchhhHHHHHHHHHH---------------------cC-------CCchHHHHHHHHHHHHhcC---ChhhHHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACK---------------------VG-------VIDDVIVASALLDTYSKRG---MPSDACKL 361 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~---------------------~~-------~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 361 (496)
.-...++.+++.....++.. .| ....+.++..+.......+ ..+..+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 11112222222222221110 00 1111222222222221111 11111111
Q ss_pred HHhcccCch------hhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC
Q 010961 362 FSELKVYDT------ILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL 432 (496)
Q Consensus 362 ~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 432 (496)
+.....|+. ..|......+.+.++.++|...+.+..+- ....|......+...|..++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 111112221 23455666777888888888777777653 3456777777788889999999999888875
Q ss_pred CC-CHHHHHHHHHHHhccCchhhHHH--HHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 433 RM-DKFSLASVISACANISSLELGEQ--VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 433 ~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.| ++....++...+.+.|+..-+.. ++.++.+.+. .+...|..|+..+.+.|+.++|.+.|+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 55 45678888888999998887777 8888888663 377899999999999999999887663
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=1.2e-07 Score=84.22 Aligned_cols=206 Identities=9% Similarity=-0.109 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
|..+...|...|++++|...|++..+.. +.+...|..+...+...|+++.|...++...+.. +.+...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334444444455555544444444432 2233444444444445555555555555444432 1123334444444444
Q ss_pred cCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 010961 352 RGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 428 (496)
.|++++|.+.|+.... |+..........+...++.++|...|++.... +...|. ........|+...+ +.++.+.
T Consensus 145 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHH
Confidence 5555555555544441 11111111111122334455555555332211 111121 11222223444333 2333333
Q ss_pred hC---CC--CC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 429 KL---DL--RM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 429 ~~---~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
+. .. .| ....|..+...+...|++++|...|++..+.++...+..-..+++..
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 21 00 11 22356666666666677777777776666654332333333344433
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=3e-06 Score=70.84 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH-HHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPRR---NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV-IGA 181 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l-l~~ 181 (496)
+.+.+..+.+..++..|++++..-.++ +....+.|..+|....++..|-+.++++.. ..|...-|..- ...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-----l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-----LHPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHHHH
Confidence 445555556666777777766655442 445566666777777777777777777765 45555444432 344
Q ss_pred HHccchHHHHHHHHHHHHHcCCCcchh--HHHHHHHHHHhcCChhhHHHHHHhcC-CCChHHHHHHHHHHHhcCChhHHH
Q 010961 182 CADLAALEYGKQIHSHILVNGLDFDSV--LGSSLVNLYGKCGDFNSANQVLNMMK-EPDDFCLSALISGYANCGKMNDAR 258 (496)
Q Consensus 182 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 258 (496)
+.+.+.+..|.++...|... ++.. +...-.......+++..+..++++.. +.+..+.........+.|+++.|.
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 55666666666666666542 1111 11111112233566677777777666 344455555555556667777777
Q ss_pred HHHHhcCCC----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 010961 259 RVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVL 301 (496)
Q Consensus 259 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 301 (496)
+-|+...+- ...+||..+ ++.+.|+++.|+++..++.++|++
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 777665552 234555443 344566667777777777666653
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.1e-06 Score=73.33 Aligned_cols=181 Identities=9% Similarity=0.065 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHH-HHHHHHHcC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQK---NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNS-MIHCYVRNG 148 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~~ 148 (496)
+.+.+..+.+..++.+|++++..-.+. +....+.|..+|....++..|-..++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 444455555666666666666555442 333445555566666666666666666543 32222221 224455566
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHH--HHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVI--GACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.+..|+++...|..+ |+...-..-+ ......+++..+..+.++.-..| +..+.+.......+.|+++.|
T Consensus 93 i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred ccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 666666666655431 2211111111 12234455555555555443222 333444444555566666666
Q ss_pred HHHHHhcCC----CChHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 227 NQVLNMMKE----PDDFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 227 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
.+-|+...+ .....|+.. -++.+.+++..|.++..++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEII 205 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHH
Confidence 666665554 112333332 33445566666666555444
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=3.1e-07 Score=81.67 Aligned_cols=57 Identities=18% Similarity=0.031 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
|..+...+...|+.++|...|++..+ | +...|+.+...+...|++++|.+.|++..+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333334444444444444443332 1 223444444444444444444444444433
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.7e-05 Score=75.93 Aligned_cols=304 Identities=13% Similarity=0.154 Sum_probs=192.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
....+-+++|..+|.+.. -+......|+. ..+.++.|.++-++..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1058 ai~~~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 334445566666665432 22233333333 335667777766666554 47888999999999999998876433
Q ss_pred HchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHH
Q 010961 162 SDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241 (496)
Q Consensus 162 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (496)
-|+..|.-++..+.+.|.+++..+++....+..-.|... ..|+-+|++.+++.+..+++. -||....
T Consensus 1131 --------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i 1197 (1666)
T KOG0985|consen 1131 --------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANI 1197 (1666)
T ss_pred --------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhH
Confidence 355678899999999999999999988888777666554 478889999988877766543 4777777
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchh
Q 010961 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321 (496)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 321 (496)
..+.+-|...+.++.|.-+|.. +..|..+...+...|++..|...-++. .+..||..+--+|...+.+.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 7788888888888888877764 456777777777888877776554432 34556766666666655443
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCC--HHHHHHHHhh-
Q 010961 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGR--IEDAKHIFRT- 395 (496)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~- 395 (496)
.| +|...++.....-...++..|-..|-+++.+.+++... ...-..|+.|.-.|.+-.- .-+-+++|..
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSR 1341 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 32 23333334444455667777777777777777776654 2333445555555554321 2222233322
Q ss_pred CCCC-------ChhhHHHHHHHHHhCCChhhHH
Q 010961 396 MPNK-------SLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 396 ~~~~-------~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
+.-| ....|+-++..|.+-..++.|.
T Consensus 1342 vNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1342 VNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2112 2345666666666666655543
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.2e-05 Score=76.60 Aligned_cols=416 Identities=14% Similarity=0.106 Sum_probs=236.2
Q ss_pred chhhHHHHH--hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-C----------
Q 010961 4 RIDYLARLL--QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-R---------- 70 (496)
Q Consensus 4 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~---------- 70 (496)
|+.|-..++ ..|...|+.+.|.+-.+.+... . +|..+.+++.+.++++-|.-++..|.. +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~-vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------S-VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------H-HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 444444554 3466789999998877666553 3 899999999999999999999888864 1
Q ss_pred Ch-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCC-CcccHHHHHHHHHHcC
Q 010961 71 NC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR-NAIAWNSMIHCYVRNG 148 (496)
Q Consensus 71 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~ 148 (496)
|. ..=..........|.+++|+.+|++-.+ |..|=..|-..|.+++|.++-+.-..- =..||......+-..+
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 11 2222233334577889999999988765 333455677789999998877654331 2346777777777788
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 228 (496)
+.+.|++.|++... |--..+..|. .++...+.+.+.+. |...|.-.....-..|+.+.|+.
T Consensus 873 Di~~AleyyEK~~~-------hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGV-------HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred cHHHHHHHHHhcCC-------hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHH
Confidence 88888888876432 1111121111 12222223332222 33334444444445677777777
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010961 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 308 (496)
+|...+ -|-.+++..|-.|+.++|-++-++-. |..+.-.+.+.|-..|++.+|...|.+.+. |.
T Consensus 934 ~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 934 FYSSAK-----DYFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred HHHHhh-----hhhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 776543 35556666666777777766665432 233444566677777777777777766542 22
Q ss_pred HHHHHHh---------------cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-------
Q 010961 309 SVLSACS---------------SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK------- 366 (496)
Q Consensus 309 ~l~~~~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 366 (496)
..|+.|- ...+.-.|-.+|++ .|.. ...-+..|.+.|.+.+|+++-=+-.
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 2222221 11122222333322 1211 1123345666777766665421111
Q ss_pred -------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCC---
Q 010961 367 -------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMD--- 435 (496)
Q Consensus 367 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~--- 435 (496)
..|+...+....-+....++++|..++-...+ |.-.+..| +..+..-..++-+.|.- +.-.|+
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~-----~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE-----FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHH
Confidence 23555566666666677777777766654332 33333333 23333333333344422 111233
Q ss_pred -HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHH
Q 010961 436 -KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489 (496)
Q Consensus 436 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (496)
...+..+...|.+.|++..|-+-|... |-+.. -++++.|.|+.++
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQA---GdKl~------AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQA---GDKLS------AMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhh---hhHHH------HHHHHHhcCCcce
Confidence 245777888899999998888766554 32222 3677788888764
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=2.5e-06 Score=78.90 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=91.0
Q ss_pred Ccch-hhHHHHHhhhhccCccchhhhhhHHHHHhccCC-CchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHH
Q 010961 2 DTRI-DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILN-STLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWN 76 (496)
Q Consensus 2 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~ 76 (496)
|||- ..+..+...+...++++.+...+....+..... +..+........+...|++++|.+.+++..+ | +...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4532 334444444445566666555555555443222 2211222223344556677777776666543 2 222222
Q ss_pred H---HHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHc
Q 010961 77 A---MIEGFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRN 147 (496)
Q Consensus 77 ~---l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 147 (496)
. ........+..+.+.+.++.... |+ ......+...+...|++++|.+.+++..+ | +...+..+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 1 11111123444444444443222 11 12223344455566666666666666553 2 344555566666666
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCH--HHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDA--FILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
|++++|...+++.... ....|+. ..+..+...+...|++++|..+++...
T Consensus 162 g~~~eA~~~l~~~l~~--~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDT--WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhc--cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666665542 0111221 123344455555566666666665553
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=1.4e-07 Score=82.52 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=116.9
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 92 (496)
+.+--.|++..+..-.+ ...... ....+....+.+++...|.++.++.-...-..|.......+...+...++-+.++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 34444566666664444 111111 1122244567778888888777665554444555555555554444445566666
Q ss_pred HHHhhCCC-C----ChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc
Q 010961 93 QLFNVMPQ-K----NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER 167 (496)
Q Consensus 93 ~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (496)
.-+++... + +..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----- 159 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ----- 159 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-----
Confidence 66654432 1 2222222234456678888888777765 4555666677788888888888888888866
Q ss_pred CCcCHHHHHHHHHHH----HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 168 LQCDAFILATVIGAC----ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|.. ...+..++ ...+.+..|.-+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+
T Consensus 160 ~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 160 IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334432 22233332 2223566777777775543 345566666666666667777777766666554
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=2.3e-07 Score=81.20 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=17.6
Q ss_pred hcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
..|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444333 222333333344444444444444444443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=8.6e-06 Score=75.34 Aligned_cols=194 Identities=10% Similarity=-0.050 Sum_probs=125.8
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhh---HHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHH
Q 010961 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFS---WNAMIEGFMKLGHKEKSLQLFNVMPQ--KND-FSWNM 108 (496)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~ 108 (496)
|+-.-.+..+...+...|+.+.+...+....+ ++... .......+...|++++|.+.+++..+ |+. ..+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 34443666677777777888887666655432 22222 22234456678999999999988765 432 23331
Q ss_pred ---HHHHHHhcCChhHHHHHHhhcCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 109 ---LISGFAKAGELKTARTLFNDMPRRN---AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 109 ---l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
........+..+.+.+.+......+ ......+...+...|++++|.+.+++..+. .+.+...+..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCcHHHHHHHHHH
Confidence 1111223456666666665533222 223445566788899999999999999882 233456677777888
Q ss_pred HccchHHHHHHHHHHHHHcCCC-cch--hHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 183 ADLAALEYGKQIHSHILVNGLD-FDS--VLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|+++++...++........ ++. ..+..+...+...|++++|..++++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8999999999999888775432 222 3455677888889999999999988653
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=1.9e-05 Score=82.77 Aligned_cols=351 Identities=12% Similarity=-0.013 Sum_probs=207.9
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQKNDF--SWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
.+...|++.+|..........+.. ............|+++.+..++..++. .+..........+...|+++++.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 344455555555544444332111 111222344566888888888877742 23333344455566788999998
Q ss_pred HHHHHHHHchhccC---CcCH--HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch----hHHHHHHHHHHhcCChhh
Q 010961 155 RLFKELNSDLVERL---QCDA--FILATVIGACADLAALEYGKQIHSHILVNGLDFDS----VLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 155 ~~~~~~~~~~~~~~---~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 225 (496)
..+........... .|.. .....+...+...|+++.+...++.....-...+. ...+.+...+...|++++
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88887754210000 1111 11222234456788999999988887763211121 234556666777899999
Q ss_pred HHHHHHhcCC-------CC--hHHHHHHHHHHHhcCChhHHHHHHHhcCC-------CC----cchHHHHHHHHHhCCCH
Q 010961 226 ANQVLNMMKE-------PD--DFCLSALISGYANCGKMNDARRVFDRTTD-------TS----SVMWNSMISGYISNNED 285 (496)
Q Consensus 226 a~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~ 285 (496)
|...+++... +. ......+...+...|+++.|...+++... ++ ...+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 9888877652 11 22345556677888999999888776443 11 12234455566777999
Q ss_pred HHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHhcccchhhHHHHHHHHHHcC--CCchHH--H--HHHHHHHHHhcCCh
Q 010961 286 TEALLLFHKMRRN--GVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKVG--VIDDVI--V--ASALLDTYSKRGMP 355 (496)
Q Consensus 286 ~~a~~~~~~m~~~--g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~~~~~~ 355 (496)
++|...+.+.... ...+ ....+..+.......|+.+.|...+....... ...... . ....+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 9998888876542 1112 12334444556677889999988888775421 111110 0 01122444557888
Q ss_pred hhHHHHHHhcccCc---hh----hHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHhCCChhh
Q 010961 356 SDACKLFSELKVYD---TI----LLNTMITVYSSCGRIEDAKHIFRTMPNK---------SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 356 ~~a~~~~~~~~~~~---~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~ 419 (496)
+.|...+.....+. .. .+..+..++...|+.++|...+++.... ...+...+..++.+.|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888877665321 11 1345666778888888888888876531 12345566777888899999
Q ss_pred HHHHHHHHHhCC
Q 010961 420 ALDLFCNMNKLD 431 (496)
Q Consensus 420 a~~~~~~m~~~~ 431 (496)
|...+.+..+..
T Consensus 750 A~~~L~~Al~la 761 (903)
T PRK04841 750 AQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHh
Confidence 998888887653
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=1.3e-05 Score=68.50 Aligned_cols=354 Identities=15% Similarity=0.130 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCC--CChhhH-HHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMI---EGFMKLGHKEKSLQLFNVMPQ--KNDFSW-NMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~~ 116 (496)
-...+.+.+...|.+.+|+.-|....+-|+..|.++. ..|...|+...|+.=+.+..+ ||...- ..-...+.+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 4456777888889999999999988887777777664 467788888888888887776 543221 1123457788
Q ss_pred CChhHHHHHHhhcCCCCcc------cHH------------HHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHH
Q 010961 117 GELKTARTLFNDMPRRNAI------AWN------------SMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILAT 177 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~------~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ 177 (496)
|.+++|..-|+.+.+.++. ++. ..+..+...|+...|++....+.+ +.| |...+..
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-----i~~Wda~l~~~ 194 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-----IQPWDASLRQA 194 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-----cCcchhHHHHH
Confidence 9999999988888753321 111 112233344555666666555555 333 3344444
Q ss_pred HHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChh
Q 010961 178 VIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMN 255 (496)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 255 (496)
-..+|...|.+..|..-++...+..-. +..++-.+-..+...|+.+.++...++..+ ||...+-.. |-+. .
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~---YKkl---k 267 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF---YKKL---K 267 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH---HHHH---H
Confidence 445555555555555555544443332 223333444455555555555555555443 322111000 0000 0
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 256 DARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST---LASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
+..+.+ .-+......++|.++++..+...+......... +..+-.++...+++.+|.+.-.++++
T Consensus 268 Kv~K~l------------es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 268 KVVKSL------------ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHH------------HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 000000 001233455667777777776666532222222 33344455566777777777777666
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 010961 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYD---TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIV 409 (496)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 409 (496)
.. +.|+.++.--..+|.-...++.|+.-|+...+.| ...-. ..+.|.++.....+.|. |.+|
T Consensus 336 ~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re----------Gle~Akrlkkqs~kRDY--YKIL-- 400 (504)
T KOG0624|consen 336 ID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE----------GLERAKRLKKQSGKRDY--YKIL-- 400 (504)
T ss_pred cC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHhccchH--HHHh--
Confidence 42 3346667667777777777777777777666222 22211 13444444444444432 2211
Q ss_pred HHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 410 GLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
+--++-.-.+..+.|++|-.. ..||.
T Consensus 401 GVkRnAsKqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 401 GVKRNASKQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred hhcccccHHHHHHHHHHHHHh-cCCcc
Confidence 222333445566677777665 35653
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=8e-05 Score=67.82 Aligned_cols=387 Identities=12% Similarity=0.130 Sum_probs=218.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHH
Q 010961 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILAT 177 (496)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 177 (496)
-|..+|..|++-+... -++++.+.++++.. | ....|..-|..-.+..+++....+|.+.... ..+...|..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-----vLnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-----VLNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HhhHhHHHH
Confidence 3678888888877655 88889999988876 3 5567888888888899999999999888772 233444444
Q ss_pred HHHHHHc-cchH----HHHHHHHHHH-HHcCCCcc-hhHHHHHHHHH---------HhcCChhhHHHHHHhcCC-C--C-
Q 010961 178 VIGACAD-LAAL----EYGKQIHSHI-LVNGLDFD-SVLGSSLVNLY---------GKCGDFNSANQVLNMMKE-P--D- 237 (496)
Q Consensus 178 ll~~~~~-~~~~----~~a~~~~~~~-~~~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~-~--~- 237 (496)
-+..-.+ .++. +...+.|+-. .+.|..+- ...|+..+..+ ....+++.+.+++.++.. | +
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 4433221 1222 2333444433 34454332 23444444432 223345666777777664 2 1
Q ss_pred hHHHHHHHHH-----------H--HhcCChhHHHHHHHhcCC------CCc---------------chHHHHHHHHHhCC
Q 010961 238 DFCLSALISG-----------Y--ANCGKMNDARRVFDRTTD------TSS---------------VMWNSMISGYISNN 283 (496)
Q Consensus 238 ~~~~~~l~~~-----------~--~~~~~~~~a~~~~~~~~~------~~~---------------~~~~~l~~~~~~~~ 283 (496)
...|+-...- + -+...+-.|.+++++... .+. ..|..+|.-=-..+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1223222111 0 022234445544443321 110 11333332211111
Q ss_pred CH--------HHHHHHHHH-HHHCCCCCCHHHH-HHHH----HHHhcccc-------hhhHHHHHHHHHHcCCCchHHHH
Q 010961 284 ED--------TEALLLFHK-MRRNGVLEDASTL-ASVL----SACSSLGF-------LEHGKQVHGHACKVGVIDDVIVA 342 (496)
Q Consensus 284 ~~--------~~a~~~~~~-m~~~g~~~~~~~~-~~l~----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 342 (496)
-- ....-.++. |.--+..|+.... ...+ +.+...|+ .+++..+++...+.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011111211 1222333332211 1111 11222333 34455555554443333344444
Q ss_pred HHHHHHHHhcC---ChhhHHHHHHhcc----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC----C-ChhhHHHHHHH
Q 010961 343 SALLDTYSKRG---MPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----K-SLISWNSMIVG 410 (496)
Q Consensus 343 ~~l~~~~~~~~---~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~ 410 (496)
..+.+.--..- ..+.....++++. ..-..+|..+++.-.+...++.|..+|.+..+ + ++.++++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44433221111 2445555565555 22344688888888899999999999999876 2 56677788877
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChH
Q 010961 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD--QIISTSLVDFYCKCGFIK 488 (496)
Q Consensus 411 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 488 (496)
||. ++.+-|.++|+--.++ +.-++.-....++-+.+.++-..+..+|++....++.|| ..+|..+++.=..-|+++
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 765 6788899999986554 234455566777778888999999999999988877665 489999999888899998
Q ss_pred HHHHhhh
Q 010961 489 MDEYYLM 495 (496)
Q Consensus 489 ~A~~~~~ 495 (496)
.+.++-+
T Consensus 490 si~~lek 496 (656)
T KOG1914|consen 490 SILKLEK 496 (656)
T ss_pred HHHHHHH
Confidence 8877643
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=1.9e-05 Score=82.90 Aligned_cols=283 Identities=13% Similarity=0.067 Sum_probs=141.8
Q ss_pred HHHHHHhcCChhhHHHHHHhcCC----C----C--h--HHHHHHHHHHHhcCChhHHHHHHHhcCC--C--C----cchH
Q 010961 213 LVNLYGKCGDFNSANQVLNMMKE----P----D--D--FCLSALISGYANCGKMNDARRVFDRTTD--T--S----SVMW 272 (496)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~----~----~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~----~~~~ 272 (496)
....+...|+++++...+....+ . + . .....+...+...|+++.|...+++..+ + + ....
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 33444556677776666654421 1 0 0 1111222334566777777777665432 1 1 1233
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CCC--c-hHH
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRN----GV-LEDASTLASVLSACSSLGFLEHGKQVHGHACKV----GVI--D-DVI 340 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~ 340 (496)
+.+...+...|++++|...+.+.... |. .+....+..+...+...|+++.|...+.+.... +.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 44455566677777777776665432 11 011123334444556677777777766665432 211 1 122
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhccc------C--chhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-hhhH---
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKV------Y--DTILLNTMITVYSSCGRIEDAKHIFRTMPN----KS-LISW--- 404 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~--- 404 (496)
.+..+...+...|++++|...+.+... + ....+..+...+...|+.+.|...++.... .. ...+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 333444555566777777766665531 1 112233344556667777777666655431 11 0111
Q ss_pred --HHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCchhhHHHHHHHHHHc----CCCch-HHHH
Q 010961 405 --NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK---FSLASVISACANISSLELGEQVFARVTII----GLDSD-QIIS 474 (496)
Q Consensus 405 --~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~ 474 (496)
...+..+...|+.+.|...+............ ..+..+..++...|++++|...++..... |..++ ..+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 01123334466777777666554432111111 11334555666677777777777755432 32222 2445
Q ss_pred HHHHHHHHhcCChHHHHHhhh
Q 010961 475 TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+..++.+.|+.++|.+.+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 556666777777777766654
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.3e-05 Score=70.22 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=74.2
Q ss_pred hhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CC-hhhHHHHHHHHHhcCCHHH
Q 010961 14 SCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RN-CFSWNAMIEGFMKLGHKEK 90 (496)
Q Consensus 14 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 90 (496)
+....|+++.|..+|...+...+. +.. .|..-..+|.+.|++++|++=-.+..+ |+ ...|.....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhv-lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHV-LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccc-hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 445688999999999999988755 333 788888899999999998876655554 44 3578889999999999999
Q ss_pred HHHHHhhCCC--C-ChhhHHHHHHHH
Q 010961 91 SLQLFNVMPQ--K-NDFSWNMLISGF 113 (496)
Q Consensus 91 a~~~~~~~~~--~-~~~~~~~l~~~~ 113 (496)
|+.-|.+..+ | |...++-+..++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999998877 3 334455555554
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=7e-05 Score=64.20 Aligned_cols=188 Identities=13% Similarity=0.007 Sum_probs=79.3
Q ss_pred HHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHH-HHHHHHHHHhcC
Q 010961 176 ATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFC-LSALISGYANCG 252 (496)
Q Consensus 176 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~ 252 (496)
.-+-+.+...|++..|+.-|...++.++. +-.++-.-...|...|+..-|+.-+..+.+ ||-.. --.-...+.+.|
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 33444444455555555555544432211 111222223344445555555554544443 33111 111123345555
Q ss_pred ChhHHHHHHHhcCCCCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 253 KMNDARRVFDRTTDTSS------------------VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 253 ~~~~a~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
.++.|..-|+.+.+.++ ......+..+...|+...|+.....+.+. .+.|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHH
Confidence 55555555555544221 01111223333445555555555555543 133444444444455
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...|.+..|+.=++...+.. ..+...+-.+-..+...|+.+.++...++..
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55555555554444443332 1222233333444444555555554444444
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.1e-05 Score=66.47 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 380 YSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
+.+..+++.|.+.+++|.+ .+..+.+.|..++.+ .+...+|.-+|++|.++ .+|++.+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 3344445555555555544 223344434433332 23345555555555543 35555555555555555555555
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 455 GEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 455 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
|..+++........ ++.+...++-+-...|.
T Consensus 226 Ae~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 226 AESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 55555555443322 33343334433334443
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00014 Score=66.33 Aligned_cols=89 Identities=10% Similarity=-0.050 Sum_probs=60.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
.+.+.+.|++..|...|.++.+ | |...|....-+|.+.|.+..|++-.+...+.. ++....|..=..++....+++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888877765 3 45677777778888888888777777666652 333444555555556666777
Q ss_pred hHHHHHHHHHHcC
Q 010961 454 LGEQVFARVTIIG 466 (496)
Q Consensus 454 ~a~~~~~~~~~~~ 466 (496)
+|.+.|++..+..
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776643
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=6.8e-05 Score=73.19 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=70.7
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHH----------------------
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLL---------------------- 63 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---------------------- 63 (496)
..|..|..-|+..-+..+|...|+...+.+ ++.......+..-|++..+++.|..+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 345555566666556666666666666654 33333555666666666666666554
Q ss_pred --------------hhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-hHHH--HHHHHHhcCChhHHH
Q 010961 64 --------------FDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF-SWNM--LISGFAKAGELKTAR 123 (496)
Q Consensus 64 --------------~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~~~a~ 123 (496)
|+...+ .|...|..+.++|.+.|++..|+++|.+...-++. +|.. .....+..|.+.+|.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 322222 24556777777788888888888887766552222 1211 222344556666666
Q ss_pred HHHhhcC
Q 010961 124 TLFNDMP 130 (496)
Q Consensus 124 ~~~~~~~ 130 (496)
..+..+.
T Consensus 651 d~l~~ii 657 (1238)
T KOG1127|consen 651 DALGLII 657 (1238)
T ss_pred HHHHHHH
Confidence 6665554
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=4.2e-08 Score=54.34 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHhccCchhhHHHHHHHH
Q 010961 431 DLRMDKFSLASVISACANISSLELGEQVFARV 462 (496)
Q Consensus 431 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (496)
|++||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=2.1e-05 Score=79.28 Aligned_cols=220 Identities=14% Similarity=0.107 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCC-C-------cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTDT-S-------SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 311 (496)
.|-..+..+...++.++|.++++++... | ...|.++++.-..-|.-+...++|++..+. --....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 3444455555555555555555544321 0 124444444444445555555555555543 11123455555
Q ss_pred HHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---c--CchhhHHHHHHHHHhcCCH
Q 010961 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---V--YDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~ 386 (496)
..|.+.+..++|.++++.|.+. +.....+|...++.+.+.++-++|..++.+.. + .......-.+..-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5555566666666666655553 12445555556666666655555655555544 1 1222333344444556666
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCchhhHHHHHHH
Q 010961 387 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK--FSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 387 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
+.+..+|+.... +....|+.+++.-.++|+.+.+..+|++....+++|-. +.|.-.+..--..|+-+.+..+=.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 666666666554 24567888888888899999999999999888887743 4566666555555665544444334
Q ss_pred H
Q 010961 462 V 462 (496)
Q Consensus 462 ~ 462 (496)
+
T Consensus 1697 A 1697 (1710)
T KOG1070|consen 1697 A 1697 (1710)
T ss_pred H
Confidence 3
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.1e-08 Score=53.41 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=22.2
Q ss_pred CCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
|+.||..+|+.|+.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666653
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.1e-05 Score=75.79 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=173.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchh
Q 010961 242 SALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE 321 (496)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 321 (496)
..+...+...|-...|..+|++ ...|..++.+|+..|+..+|..+..+-.+ -+||...|..+.+......-++
T Consensus 402 ~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 4566778889999999999998 56788899999999999999999888777 3889999988888877777788
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 322 HGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
+|.++.+..... .-..+.....+.++++++.+.|+.-. +....+|-.+..+..+.++++.|.+.|..-..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 888887764432 11222233344788999999988655 44566888888888999999999999988764
Q ss_pred --C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC-CCchHHHH
Q 010961 399 --K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIIS 474 (496)
Q Consensus 399 --~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 474 (496)
| +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+-...+.|.++.|.+.+..+.+.. ...|..+.
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 5 45689999999999999999999999999887 4456678888888889999999999998775421 11144444
Q ss_pred HHHHHHH
Q 010961 475 TSLVDFY 481 (496)
Q Consensus 475 ~~l~~~~ 481 (496)
..++...
T Consensus 627 ~~iv~~~ 633 (777)
T KOG1128|consen 627 LIIVRTV 633 (777)
T ss_pred HHHHHHH
Confidence 4444433
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.1e-05 Score=66.53 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=88.5
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCG 384 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 384 (496)
..+-..+...|+-+....+....... .+.+.......+....+.|++.+|...+.+.. ++|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455555666666666555553332 23344455556666666777777776666655 455556666666666666
Q ss_pred CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 385 RIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 385 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
+++.|..-|.+..+ .+....+.+...|.-.|+.+.|..++.+....+ .-|...-..+..+....|+++.|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666665543 344556666666666666666666666666542 2245555555556666666666665543
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=6.3e-05 Score=62.22 Aligned_cols=168 Identities=11% Similarity=0.108 Sum_probs=98.7
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC-cchH
Q 010961 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTS-SVMW 272 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 272 (496)
+.+++......-+......-...|+..|++++|++.+... .+......-+..+.+..+.+-|...+++|.+-| ..+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL 172 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATL 172 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3333333333323233333444566677777777776662 233333344455566666677777777766633 3455
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 273 NSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 273 ~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
+.|..++.+ .+...+|.-+|++|-++ .+|+..+.+....++...|++++|..+++....... .++.+...++.+
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~ 250 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHH
Confidence 545555443 35577888888888765 577888888888888888888888888888877653 344555555555
Q ss_pred HHhcCChhhH-HHHHHhc
Q 010961 349 YSKRGMPSDA-CKLFSEL 365 (496)
Q Consensus 349 ~~~~~~~~~a-~~~~~~~ 365 (496)
-...|...++ .+.+.++
T Consensus 251 a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHhCCChHHHHHHHHHH
Confidence 5555554443 3333433
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=9e-06 Score=74.39 Aligned_cols=240 Identities=11% Similarity=0.127 Sum_probs=147.1
Q ss_pred HHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHH
Q 010961 248 YANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 324 (496)
+.+.|++.+|.-.|+...+.| ..+|.-|.......++-..|+..+++..+.. +-+......|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 456666777777776655533 3466666666666776667777776666642 334455556666666777666676
Q ss_pred HHHHHHHHcCCCc--------hHHHHHHHHHHHHhcCChhhHHHHHHhcc-----cCchhhHHHHHHHHHhcCCHHHHHH
Q 010961 325 QVHGHACKVGVID--------DVIVASALLDTYSKRGMPSDACKLFSELK-----VYDTILLNTMITVYSSCGRIEDAKH 391 (496)
Q Consensus 325 ~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (496)
..++.-+...++- +...-.. ..+.....+....++|-++. .+|+.+...|.-.|.-.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 6666654432110 0000000 00000111222333333333 3677777888888888888888888
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCchhhHHHHHHHHHH---
Q 010961 392 IFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASVISACANISSLELGEQVFARVTI--- 464 (496)
Q Consensus 392 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 464 (496)
.|+.... | |...||.|...++...+.++|+..|.+..+. +|+. .....|.-+|...|.+++|...|-..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 8887764 4 5578888888888888888888888888875 7764 3555566678888888888877764432
Q ss_pred c------CCCchHHHHHHHHHHHHhcCChHHHHH
Q 010961 465 I------GLDSDQIISTSLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 465 ~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (496)
. +..++..+|.+|=.++.-.++.+-+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2 112234677777777777776664443
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=5.8e-05 Score=76.23 Aligned_cols=219 Identities=15% Similarity=0.123 Sum_probs=174.7
Q ss_pred CC-cchHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHH
Q 010961 267 TS-SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIV 341 (496)
Q Consensus 267 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 341 (496)
|| ...|-..|..+...++.++|.++.++.... ++.-. ...|.++++.-..-|.-+...++|+++.+.. ..-.+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 44 568888999999999999999999998865 22222 2346666666666678888999999998853 34557
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHh
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K---SLISWNSMIVGLSQ 413 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~ 413 (496)
|..|...|.+.+..++|-++++.|. ......|...+..+.+.++-+.|..++.+..+ | ........+..-.+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999998 44677899999999999999999999998775 3 34455566677778
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH--HHHHHHHHHHHhcCChH
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ--IISTSLVDFYCKCGFIK 488 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 488 (496)
.|+.+.+..+|+..... .|--...|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|.-.++.=-..|+-+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 99999999999998876 3556779999999999999999999999999999887754 45555555444456543
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.47 E-value=3e-05 Score=64.09 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 010961 343 SALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGS 416 (496)
Q Consensus 343 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 416 (496)
..+-..+...|+-+....+..... +.|.......+......|++..|...|++... +|...|+.+.-+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 555566667777777777776644 34555666678888888888888888888775 466788888888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+.|..-|.+..+.. +-++..++.+.-.+.-.|+++.|..++......+.. |..+-..|..+....|++++|.++..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888888887752 335667777877888888888888888877765432 66677777888888888888887754
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=9.9e-06 Score=76.16 Aligned_cols=213 Identities=12% Similarity=0.009 Sum_probs=169.3
Q ss_pred CcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHh
Q 010961 204 DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYIS 281 (496)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 281 (496)
+|-...-..+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+..+ |++..|..+......
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 444445566778888899999999999874 5677889999999999999999887665 677888888888777
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHH
Q 010961 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 361 (496)
..-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788999888765432 11112222334789999999998877764 45667888888888999999999999
Q ss_pred HHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 362 FSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 362 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
|.... +.+...||.+-.+|.+.++..+|...+.+..+- +...|...+....+.|.+++|.+.+.++.+
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 98877 556678999999999999999999999998873 455677777888899999999999998865
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=9.6e-06 Score=69.96 Aligned_cols=175 Identities=10% Similarity=-0.079 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC-c-hHHHHHHHHHHHHhcCChhhHHHHHHhccc--C-chh---hHH
Q 010961 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVI-D-DVIVASALLDTYSKRGMPSDACKLFSELKV--Y-DTI---LLN 374 (496)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~---~~~ 374 (496)
....+..+...+...|+++.|...++.+.+.... | ....+..+..++...|++++|...++++.. | ++. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555666667777777777777777664321 1 123455566677777777777777776651 2 121 233
Q ss_pred HHHHHHHhc--------CCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 375 TMITVYSSC--------GRIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 375 ~l~~~~~~~--------~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
.+..++... |+++.|.+.|+.+.+ |+. ..+..+... ..+... . ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHHHH
Confidence 333333332 455555555555543 221 111111000 000000 0 00011344
Q ss_pred HHHhccCchhhHHHHHHHHHHcCC--CchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 444 SACANISSLELGEQVFARVTIIGL--DSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+.+.|++++|...++...+... +.....+..++.++.+.|++++|.++++
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556677788888887777766432 1234667777777888888888777654
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=2.1e-05 Score=72.07 Aligned_cols=240 Identities=15% Similarity=0.076 Sum_probs=173.4
Q ss_pred HHHHHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHH
Q 010961 214 VNLYGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTE 287 (496)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 287 (496)
..-+.+.|++.+|.-.|+...+ | +...|..|.......++-..|+..+++..+-+ ..+.-.|.-.|...|.-..
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 3445678999999999998775 3 35689999999999999999999999887744 4566667778889999999
Q ss_pred HHHHHHHHHHCCCCC--------CHHHHHHHHHHHhcccchhhHHHHHHHHH-HcCCCchHHHHHHHHHHHHhcCChhhH
Q 010961 288 ALLLFHKMRRNGVLE--------DASTLASVLSACSSLGFLEHGKQVHGHAC-KVGVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 288 a~~~~~~m~~~g~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
|+..++.-+....+- +...-.. +.+.....+....++|-++. ..+..+|+.++..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886542100 0000000 12223334445555555554 445558888899999999999999999
Q ss_pred HHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHh---
Q 010961 359 CKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNK--- 429 (496)
Q Consensus 359 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~--- 429 (496)
.+.|+... +.|..+||.|...++...+.++|+..|++..+ |+. .+.-.|.-.|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999887 55778999999999999999999999999986 664 4556677889999999999998877544
Q ss_pred CCC------CCCHHHHHHHHHHHhccCchhhH
Q 010961 430 LDL------RMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 430 ~~~------~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
.+- .++...|.+|=.++.-.++.+.+
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 211 11233555555555555554433
No 119
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00017 Score=64.27 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=53.9
Q ss_pred hHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC---CCh----hhHHHH
Q 010961 357 DACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN---GSP----IEALDL 423 (496)
Q Consensus 357 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---g~~----~~a~~~ 423 (496)
++..+++++. +.|...|+....++...|+++++++.++++.+ .|..+|+.....+.+. |.. ++.++.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 3444444443 23334444444555555555555555555543 2333444443333322 111 234444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcc----CchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 424 FCNMNKLDLRMDKFSLASVISACANI----SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (496)
..++.... +-|...|+.+...+... +...+|...+....+.++ .++.....|++.|+.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 44444431 22444455444444442 223345555554444322 244455555555554
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.41 E-value=0.00019 Score=71.69 Aligned_cols=243 Identities=8% Similarity=0.051 Sum_probs=149.6
Q ss_pred hHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 010961 28 HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC-FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDF 104 (496)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 104 (496)
+....-....|+....+..|+..|...+++++|.++.+...+ |+. ..|..+...+.+.++...+..+ .+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~------ 89 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL------ 89 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh------
Confidence 344445677888888999999999999999999999886655 433 3444444567777776666555 22
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
+.......++.-...+...+.. .+..++..+..+|-+.|+.++|...++++.+. .+-|....|.+...+
T Consensus 90 -----l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 -----IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA----DRDNPEIVKKLATSY 160 (906)
T ss_pred -----hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHH
Confidence 2222233333223333333332 13346778888888999999999999998882 233567788888888
Q ss_pred HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHH---HHHHHhcCChhHHHH
Q 010961 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL---ISGYANCGKMNDARR 259 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~ 259 (496)
+.. ++++|.+++.+.+.. +...+++..+..+|.++.+-++.-+..+ .+.....-...
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~---- 220 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT---- 220 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc----
Confidence 877 888888888776654 5556677777777777775332222211 11111110011
Q ss_pred HHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
.-+.++-.+-..|-..+++++++.+++.+.+.. +-|......++.+|.
T Consensus 221 -------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 -------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred -------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 113345555566666777777777777777653 334444555555543
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.0005 Score=62.21 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=74.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 010961 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLA-SVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356 (496)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (496)
.+...|++++|...++.+... .|+...|. .....+...++.++|.+.++.+.... +......-.+.++|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 344556666666666666554 34333333 33344556666666666666666542 112444455556666666666
Q ss_pred hHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 357 DACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 357 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+|+.+++... +.|+..|..|..+|...|+..++... ....|...|+++.|...+....+.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A--------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA--------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH--------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6666666555 44555666666666666655555432 223455556666666666555554
No 122
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=4.5e-05 Score=67.93 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=112.9
Q ss_pred hhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcC-ChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCH--
Q 010961 15 CNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCG-NPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHK-- 88 (496)
Q Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-- 88 (496)
+...+..++|..+...+++.. |....+|+.-...+...| ++++++..++++.+ .+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 334567777777777777765 455546666666666666 56777777777664 2344565554445555542
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHc---CCH----HHHHH
Q 010961 89 EKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRN---GFA----REAVR 155 (496)
Q Consensus 89 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---~~~----~~a~~ 155 (496)
++++++++++.+ .|..+|+....++...|+++++++.++++.+ .|..+|+....++.+. |.. ++.++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 566677766655 3455666666667777777777777777764 3555666655555443 222 34555
Q ss_pred HHHHHHHchhccCCcCHHHHHHHHHHHHcc----chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh
Q 010961 156 LFKELNSDLVERLQCDAFILATVIGACADL----AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK 219 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (496)
...+.... .+-|...|+-+...+... +...++.....+..+.++. +......|++.|+.
T Consensus 205 y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 55555441 222334555555444442 2234455555555443322 44455556666654
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=0.00023 Score=71.01 Aligned_cols=150 Identities=8% Similarity=0.060 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
++-.+..+|-+.|+.++|...|+++.+.. +-|....+.+.-.++.. ++++|.+++.++... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 55566667777777777777777777765 45566666666666666 777777776665543 45
Q ss_pred hcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhC-CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 351 KRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTM-PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
..+++.++.++|.++...++.-+..+.....+. ...+ ...-+.++-.+-..|-..++++++..+++...+
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki---------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKV---------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHH---------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 555667777777766644433222222111100 0000 112334455555667777788888888888887
Q ss_pred CCCCCCHHHHHHHHHHHh
Q 010961 430 LDLRMDKFSLASVISACA 447 (496)
Q Consensus 430 ~~~~p~~~~~~~l~~~~~ 447 (496)
.. +-|.....-++.+|.
T Consensus 252 ~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 252 HD-NKNNKAREELIRFYK 268 (906)
T ss_pred cC-CcchhhHHHHHHHHH
Confidence 63 346666667776665
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=1.3e-05 Score=62.54 Aligned_cols=94 Identities=10% Similarity=-0.057 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.+..+...+...|++++|...|+.... .+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 333444555555666666665555543 244566667777777777777777777777653 4466677777777777
Q ss_pred cCchhhHHHHHHHHHHcC
Q 010961 449 ISSLELGEQVFARVTIIG 466 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~ 466 (496)
.|++++|...++...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777766643
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=3.6e-05 Score=63.64 Aligned_cols=118 Identities=11% Similarity=0.049 Sum_probs=70.8
Q ss_pred ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHH-HhcCC--HHHHH
Q 010961 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVY-SSCGR--IEDAK 390 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~-~~~~~--~~~a~ 390 (496)
.++.+++...+....+.+ +.+...|..+...|...|++++|...|++.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445556666666655554 4566667777777777777777777777665 33444555555543 44444 35666
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 391 HIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 391 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
+++++..+ .+..++..+...+...|++++|+..|+++.+.. +|+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 66666554 244556666666666677777777776666653 4443
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=1.7e-05 Score=62.01 Aligned_cols=106 Identities=9% Similarity=-0.043 Sum_probs=68.2
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 259 RVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
.+|++..+.++..+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.+ +.+
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 34444444444445555666667777777777777766653 4455666666666777777777777777777654 445
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...+..+..++...|++++|+..|+...
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666777777777777777777655
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=4.3e-05 Score=65.93 Aligned_cols=184 Identities=10% Similarity=-0.027 Sum_probs=126.6
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH--HH
Q 010961 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA---STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IV 341 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 341 (496)
.....+..+...+...|++++|...|+++.... +.+. ..+..+..++...|++++|...++.+.+....... ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677788889999999999999999998753 2222 45667778899999999999999999886432221 23
Q ss_pred HHHHHHHHHhc--------CChhhHHHHHHhccc--Cch-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 010961 342 ASALLDTYSKR--------GMPSDACKLFSELKV--YDT-ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVG 410 (496)
Q Consensus 342 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 410 (496)
+..+..++... |+.++|.+.|+.+.. |+. ..+..+..... ..... ......+...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~ 175 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNRL----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHHH----------HHHHHHHHHH
Confidence 44455555544 678899999998872 332 22222211111 00000 0112256677
Q ss_pred HHhCCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 411 LSQNGSPIEALDLFCNMNKLDL--RMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 411 ~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
|.+.|++.+|...+++..+..- +.....+..+..++...|++++|...++.+...
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8899999999999999887521 223567889999999999999999998887654
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.37 E-value=0.0032 Score=61.41 Aligned_cols=464 Identities=12% Similarity=0.084 Sum_probs=250.6
Q ss_pred hccCccchhhhhhHHHHHhccCCCchHHHHHHHHHH--HhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHH
Q 010961 16 NTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMY--MRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEK 90 (496)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 90 (496)
...+++..|......+.+.. |+. .|...+.++ .+.|+.++|..+++.... .|..+...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 45678899999999988876 444 345556654 467999999999987754 477889999999999999999
Q ss_pred HHHHHhhCCC--CChhhHHHHHHHHHhcCChhH----HHHHHhhcCCCCcccHHHHHHHHHHcCC----------HHHHH
Q 010961 91 SLQLFNVMPQ--KNDFSWNMLISGFAKAGELKT----ARTLFNDMPRRNAIAWNSMIHCYVRNGF----------AREAV 154 (496)
Q Consensus 91 a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~ 154 (496)
|..+|++..+ |+..-...+..+|.|.+.+.+ |.++++..++. ...+-++++.....-. ..-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999999987 776667777888888887654 56666655543 4444455555544311 23455
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHH-HHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHS-HILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
+.++.+... .|---+..-...-...+...+++++|..++. ...+.-...+...-+--+..+...+++.+..++-.++
T Consensus 175 ~m~~~~l~~--~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 175 KMVQKLLEK--KGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhcc--CCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 566666664 2211122223333445667888999999884 3333333334444456677888888888888877776
Q ss_pred CCCChHHHHHHHHHH----------------HhcCChhHHHHHHHhcCCC-CcchHHHHHHHH---HhCCCHHHHHHHHH
Q 010961 234 KEPDDFCLSALISGY----------------ANCGKMNDARRVFDRTTDT-SSVMWNSMISGY---ISNNEDTEALLLFH 293 (496)
Q Consensus 234 ~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~---~~~~~~~~a~~~~~ 293 (496)
...+..-|...+..+ ...+..+...+..++.... .--.|-+-+..+ ..-|+.+++...|-
T Consensus 253 l~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 253 LEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred HHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 642211133333321 1222333333333333321 111233333333 34577777655443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC--chHH---HHHHHHHHHHhcCC-----hhhHHHHHH
Q 010961 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVI---VASALLDTYSKRGM-----PSDACKLFS 363 (496)
Q Consensus 294 ~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~~l~~~~~~~~~-----~~~a~~~~~ 363 (496)
+- -|-.|- |..=+..|...=..++-..++......... .+.. .+...+..-.-.|. -+.-..++.
T Consensus 333 ~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~ 407 (932)
T KOG2053|consen 333 KK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVR 407 (932)
T ss_pred HH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHH
Confidence 22 222221 111111111111112222222222211000 0000 01111111111221 111122221
Q ss_pred hcc----c---------Cc---------hhhHHHHHHHHHhcCCHH---HHHHHHhhCCCC---ChhhHHHHHHHHHhCC
Q 010961 364 ELK----V---------YD---------TILLNTMITVYSSCGRIE---DAKHIFRTMPNK---SLISWNSMIVGLSQNG 415 (496)
Q Consensus 364 ~~~----~---------~~---------~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 415 (496)
+.. . |+ .-+.+.|++.+.+.++.. +|+-+++..... |..+=-.+|+.|.-.|
T Consensus 408 kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lG 487 (932)
T KOG2053|consen 408 KLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLG 487 (932)
T ss_pred HHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhc
Confidence 111 0 11 114567778888877765 455555555442 3444456788888889
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
-...|.++|+.+.-+.++.|...|.. ...+.-.|++..+...+......--..-..+-. +|....+.|.+.+-.++
T Consensus 488 a~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 488 AFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEM 563 (932)
T ss_pred CChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHH
Confidence 99999999998887777777555443 234556678888888877544321011112222 23333466666665544
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00085 Score=55.34 Aligned_cols=185 Identities=14% Similarity=0.099 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHHHHHchhcc-CCcCHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChh
Q 010961 147 NGFAREAVRLFKELNSDLVER-LQCDAF-ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN 224 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (496)
..+.++.++++.++......| ..|+.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 456788888888887654455 666665 45556677778888888998888887754 323333333333445678899
Q ss_pred hHHHHHHhcCCCC---hHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 225 SANQVLNMMKEPD---DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 225 ~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
+|.++++.+.+.| .+++-.-+...-..|+-..|++-+....+ .|...|.-+...|...|++++|.-.++++.-.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999998887533 34555555555566666666666655444 56777888888888888888888888877764
Q ss_pred CCCCC-HHHHHHHHHHHh---cccchhhHHHHHHHHHHcC
Q 010961 299 GVLED-ASTLASVLSACS---SLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 299 g~~~~-~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~ 334 (496)
.|. +-.|..+...+. ...+.+.+.++|....+..
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 343 333333333322 2335566677777766654
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.27 E-value=0.0033 Score=57.75 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChhhHHHHH
Q 010961 285 DTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLF 362 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 362 (496)
.+.....+++....- ..|+ -+|..+++.-.+..-++.|+.+|.++.+.+..+ ++.++++++..|| .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 556666666666542 3343 356677777777788888888998888877665 7777888887666 46677888888
Q ss_pred Hhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 363 SELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 363 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+--. ..++......+.-+...++-..+..+|++.... ....|..++.--..-|+...++++-+++...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8665 445555566777777888888888888877653 3357888888888888888888887776653
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.8e-06 Score=48.70 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 435 (496)
+|++++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=3.7e-05 Score=69.88 Aligned_cols=121 Identities=18% Similarity=0.139 Sum_probs=62.0
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchH
Q 010961 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188 (496)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 188 (496)
|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|++++++..+. .+-+...+..-...+...++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE----NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCH
Confidence 3444444555555555555555554445555555555555555555555555541 222333444444445555555
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 189 EYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
+.|.++.+++.+..+. +..+|..|..+|...|+++.|+-.++.++
T Consensus 251 ~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555544322 33455555555555555555555555544
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=4.1e-05 Score=69.61 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhh
Q 010961 343 SALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 343 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 419 (496)
..|+..+...++++.|..+|+++...++.....++..+...++-.+|.+++++..+. +......-...+.+.++++.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 334444445556666666666655444444445555555555555555555554431 22233333444555555555
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 420 ALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 420 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
|+++.+++... .| +..+|..|..+|...|+++.|+..+.
T Consensus 253 AL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 253 ALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555553 33 23355555555555555555555444
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=0.00015 Score=59.97 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=48.8
Q ss_pred CChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcccc--hhhHHH
Q 010961 252 GKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC-SSLGF--LEHGKQ 325 (496)
Q Consensus 252 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~-~~~~~--~~~a~~ 325 (496)
++.+++...+++..+ .+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 333444444443332 233445555555555555555555555544432 22333333333332 33333 245555
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
++++..+.+ +.+...+..+...+...|++++|+..|+++
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544443 223334444444444444444444444443
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00015 Score=71.47 Aligned_cols=132 Identities=7% Similarity=-0.068 Sum_probs=109.2
Q ss_pred CCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHH
Q 010961 334 GVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSM 407 (496)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 407 (496)
....+...+..|.......|..++|..+++... +.+......+...+.+.+++++|+..+++... | +......+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 345668888889999999999999999999887 44556777888899999999999999998876 3 44567778
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
..++.+.|++++|..+|++....+ +-+..++..+..++-..|+.++|...|+...+.-
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 888889999999999999999842 3457788889999999999999999999887753
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00085 Score=60.79 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH-HHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV-IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (496)
..-.+...|++++|...+..+.. ..|+...|..+ ...+...++..+|.+.++.++...+. .....-.+..++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all 385 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHH
Confidence 33344556777777777777665 34444444333 35666667777777777766654332 1344455666667
Q ss_pred hcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 219 KCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
+.|++.+|+.+++.... .|+..|..|..+|...|+..++..-. ...|...|+++.|+..+...
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHH
Confidence 77777777776666552 34556666666666666655543332 24455566666666666655
Q ss_pred HHC
Q 010961 296 RRN 298 (496)
Q Consensus 296 ~~~ 298 (496)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 554
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=3.3e-06 Score=47.58 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=29.4
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLED 303 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 303 (496)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888999999999999999999988888887
No 138
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=0.006 Score=57.86 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 208 VLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
...-.+.+++...|.-++|.+.+-+...|. ..+..|...++|.+|.++-++..
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444455555555555554444444333 22334445555555555555443
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=3.1e-06 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM 434 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 434 (496)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=5.8e-06 Score=46.17 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLE 302 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 302 (496)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888887776
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.013 Score=57.50 Aligned_cols=429 Identities=12% Similarity=0.111 Sum_probs=225.2
Q ss_pred HhcCChHHHHHHhhhCCC--CChhhHHHHHHHH--HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHH
Q 010961 52 MRCGNPTDALLLFDEMPR--RNCFSWNAMIEGF--MKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTART 124 (496)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 124 (496)
...+++.+|....+++.+ ||. .|...+.++ .+.|+.++|..+++.... .|..|...+-.+|.+.++.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 356788888888887765 333 344444443 478999999988887765 467788888888999999999999
Q ss_pred HHhhcCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccc----------hHHHHH
Q 010961 125 LFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA----------ALEYGK 192 (496)
Q Consensus 125 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~ 192 (496)
++++... |+......+..+|++.+.+.+-.+.=-++-+. .+-+.+.|-++++...+.. -...|.
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999886 44344455666777777766544444444442 3445566666666654331 123455
Q ss_pred HHHHHHHHcC-CCcchhHHHHHHHHHHhcCChhhHHHHHHh-----cCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 193 QIHSHILVNG-LDFDSVLGSSLVNLYGKCGDFNSANQVLNM-----MKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
+..+.+.+.+ .--+..-...-...+...|.+++|..++.. ....+...-+.-+..+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5666665544 211222222223344556788888888732 2223444445566777778888877777766665
Q ss_pred CCcchHHHHHHHHHh----------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---cccchhhHHHHH
Q 010961 267 TSSVMWNSMISGYIS----------------NNEDTEALLLFHKMRRNGVLEDASTLASVLSACS---SLGFLEHGKQVH 327 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~---~~~~~~~a~~~~ 327 (496)
.+..-|...+..+.+ .+..+...+...+.... -....|-+-+.... .-|+.+++...|
T Consensus 255 k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 255 KGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred hCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 333224333332211 11122222222222211 01112222222222 335555544333
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-Cchhh--------HHHHHHHHHhcCCH-----HHHHHHH
Q 010961 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTIL--------LNTMITVYSSCGRI-----EDAKHIF 393 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~l~~~~~~~~~~-----~~a~~~~ 393 (496)
-+ +.|..| .|..=+..|...=..++-..++..... .+..+ +...+..-...|.+ +.-..++
T Consensus 332 ~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 332 FK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred HH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 22 222222 111111112111122222222222221 00000 11222222222211 1111222
Q ss_pred hhC----CC---------CCh---------hhHHHHHHHHHhCCChhh---HHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 394 RTM----PN---------KSL---------ISWNSMIVGLSQNGSPIE---ALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 394 ~~~----~~---------~~~---------~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
++. .+ |.. -+-+.|++.+-+.++... |+-+++.-.... +-|..+=-.+|+.|.-
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHH
Confidence 111 11 111 245778888888887664 444555544442 3355666778899999
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.|-+..|..+++.+.-.++..|..-|. +...+.-.|++..+...++
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~ 531 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFN 531 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHH
Confidence 999999999999886666776654443 3445566788888777654
No 142
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.09 E-value=0.0068 Score=54.04 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 290 (496)
+..+.-+...|+...|.++-.+..=|+...|...+.+++..++|++-.++... +.++..|..++..+.+.|+..+|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 33344445555566666665555556655555555555555555555554332 3344555555555555555555555
Q ss_pred HHHH
Q 010961 291 LFHK 294 (496)
Q Consensus 291 ~~~~ 294 (496)
++..
T Consensus 259 yI~k 262 (319)
T PF04840_consen 259 YIPK 262 (319)
T ss_pred HHHh
Confidence 5544
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.0021 Score=53.13 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
..++-+....|+.+-|...++.+... ++-+...-..-.--+-..|++++|.++++.+.+.+ +.|..++..=+...-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33344444455555555555555443 11111111111111233455555555555555443 33334444333344444
Q ss_pred CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 353 GMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 353 ~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (496)
|+.-+|++-+.... ..|...|.-+...|...|++++|.-.++++
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44444444444433 345555555555555555555555555554
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=0.00064 Score=60.12 Aligned_cols=157 Identities=10% Similarity=0.142 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC-------C--ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC--hh
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR-------R--NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-------KN--DF 104 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~--~~ 104 (496)
.|......|...|++++|.+.|.+... + -...|.....++.+. ++++|.+.+++..+ ++ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 445555555555666555555554421 1 012233333343333 55555555554332 11 12
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHhhcCC----CC-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHchh--ccCCcCH
Q 010961 105 SWNMLISGFAKA-GELKTARTLFNDMPR----RN-----AIAWNSMIHCYVRNGFAREAVRLFKELNSDLV--ERLQCDA 172 (496)
Q Consensus 105 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~p~~ 172 (496)
.+..+...|-.. |++++|.+.|++..+ .+ ...+..+...+.+.|++++|+++|++...... ...+.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 334455556565 666666666665542 11 12344555666666667777666666654210 0011122
Q ss_pred H-HHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 173 F-ILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 173 ~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
. .|...+-++...|++..|.+.++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 122222344445566666666665554
No 145
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.00084 Score=66.37 Aligned_cols=175 Identities=10% Similarity=-0.010 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHH
Q 010961 300 VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
.+.+...+..|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++.. +.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45668888889999999999999999999999874 4456677788899999999999999999988 4455677888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
..++.+.|++++|..+|+++..++ ..++..+...+...|+.++|...|++..+.. .|-..-|+.++ ++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHH
Confidence 899999999999999999998643 5688888999999999999999999998863 55556666554 3444
Q ss_pred hHHHHHHHHHH----cCCCchHHHHHHHHHHHH
Q 010961 454 LGEQVFARVTI----IGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 454 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 482 (496)
.-..+++++.- .|.+.......+.+..|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 44555555532 233333444555555444
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00048 Score=54.02 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC---HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcch--hHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD---AFILATVIGACADLAALEYGKQIHSHILVNGLDFDS--VLGS 211 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 211 (496)
|..++..+ ..++...+...++.+... .+.+ ......+...+...|++++|...|++.......++. ....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 33344443 366666666666666652 1111 223333445566667777777777766665533322 2333
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCCCC--hHHHHHHHHHHHhcCChhHHHHHHH
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKEPD--DFCLSALISGYANCGKMNDARRVFD 262 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (496)
.|...+...|++++|+..++....+. ...+......+.+.|++++|...|+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666677777777766544322 2233334444444444444444444
No 147
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00012 Score=56.87 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.+...+...|++++|...|+.+.. .+...|..+...+...|++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 334444445555555555544432 244566666666777777777777777666653 4455666666667777777
Q ss_pred hhhHHHHHHHHHHc
Q 010961 452 LELGEQVFARVTII 465 (496)
Q Consensus 452 ~~~a~~~~~~~~~~ 465 (496)
++.|...++...+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (135)
T TIGR02552 101 PESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766664
No 148
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00018 Score=55.87 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNG 415 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 415 (496)
...+...+...|++++|...|+... +.++..+..+...+...|++++|...++...+ .+...+..+...|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 3344444555555555555555443 23344555555555555555555555555533 34556666777888888
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHH
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFS 438 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~ 438 (496)
++++|...|++..+. .|+...
T Consensus 100 ~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 100 EPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CHHHHHHHHHHHHHh--ccccch
Confidence 888888888887775 454433
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.0079 Score=57.11 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=135.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHH----------HHHHHhcCChhHHHHHHhhcCCCCcccHH
Q 010961 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSWNML----------ISGFAKAGELKTARTLFNDMPRRNAIAWN 138 (496)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (496)
|-+..|..+.......-.++.|...|-+... +....-..| ...-+--|++++|++++-.+..+|
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 5667788888777766677777777766654 322111111 111223588999999998888776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (496)
..|..+.+.|+|-...++++.--.. ....--...++.+...++....++.|.+.|..-.. ....+.++.
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~d--~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly 833 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGSD--DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLY 833 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHH
Confidence 3567778888988888877643211 01111234677788888888888888888865421 135677788
Q ss_pred hcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 219 KCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
+..++++-..+-..+.+. ....-.+..++.+.|.-++|.+.|-+-..|. ..+..|...++|.+|.++-+..
T Consensus 834 ~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 878888777777766653 3455667788888888888888877665553 3445666777787877766554
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.94 E-value=0.00085 Score=52.64 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH--HHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVASALL 346 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 346 (496)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344443 3566666666666665542 222 111222334455566666666666666655422221 1222334
Q ss_pred HHHHhcCChhhHHHHHHh
Q 010961 347 DTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~ 364 (496)
..+...|++++|+..++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 444455555555555543
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.0013 Score=58.12 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhcccchhhHHHHHHHHHHc--CCCch--HH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVL-----EDAS-TLASVLSACSSLGFLEHGKQVHGHACKV--GVIDD--VI 340 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 340 (496)
.+..+...+.+.|++++|+++|++....-.. .+.. .|...+-++...||...|...++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4455566677777777777777776654221 1111 1122222344456666666666665543 22222 33
Q ss_pred HHHHHHHHHHhc--CChhhHHHHHHhcccCchhhHH
Q 010961 341 VASALLDTYSKR--GMPSDACKLFSELKVYDTILLN 374 (496)
Q Consensus 341 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 374 (496)
....|+.++-.. ..++.++.-|+.+.+.|..--.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHH
Confidence 344455555432 2445555555555555544333
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2.1e-05 Score=42.70 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 431 (496)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.02 Score=51.13 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 346 LDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
+.-+...|+...|.++-.+..-|+...|-..+.+++..+++++-.++... ++++..|..++.+|.+.|+..+|..++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 44445556666666666666666666666666666666666666655443 4455666666666666666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
+ +++ ..-+..|.+.|++.+|.+.
T Consensus 262 k-----~~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 262 K-----IPD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred h-----CCh-----HHHHHHHHHCCCHHHHHHH
Confidence 5 111 2233445555666555544
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=3.1e-05 Score=42.02 Aligned_cols=30 Identities=43% Similarity=0.713 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGV 300 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 300 (496)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00055 Score=48.83 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------chhhHHHHHHHHHHcCCCchHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLG--------FLEHGKQVHGHACKVGVIDDVIV 341 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 341 (496)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|++|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566677777999999999999999999 899999999999876532 34567788999999999999999
Q ss_pred HHHHHHHHHh
Q 010961 342 ASALLDTYSK 351 (496)
Q Consensus 342 ~~~l~~~~~~ 351 (496)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.00076 Score=48.12 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccC-CcCHHHHHHHHHHHHccc--------hHHHHHHHHHHHHHcCCCcc
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERL-QCDAFILATVIGACADLA--------ALEYGKQIHSHILVNGLDFD 206 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~ 206 (496)
+....|..+...+++.....+|+.+++ .|+ .|+..+|+.++.+..+.. ..-....+|+.|+..+++|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR---N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~ 103 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR---NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPN 103 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh---cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCc
Confidence 344566677777999999999999999 578 899999999998876542 34567889999999999999
Q ss_pred hhHHHHHHHHHHh
Q 010961 207 SVLGSSLVNLYGK 219 (496)
Q Consensus 207 ~~~~~~l~~~~~~ 219 (496)
..+|+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.73 E-value=0.033 Score=50.45 Aligned_cols=217 Identities=13% Similarity=0.032 Sum_probs=123.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH----
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRNGVLE----DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA---- 344 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---- 344 (496)
..+...+.. +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+..+.-.. |+...-..
T Consensus 265 ~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls 340 (549)
T PF07079_consen 265 EPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLS 340 (549)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcC
Confidence 334444443 5666666666555443222 23567778888888888888888888776543 33222111
Q ss_pred ---HHHHHHhc-C---ChhhHHHHHHhcccCch---hhHHHHHH---HHHhcCC-HHHHHHHHhhCCC---CChhhHHH-
Q 010961 345 ---LLDTYSKR-G---MPSDACKLFSELKVYDT---ILLNTMIT---VYSSCGR-IEDAKHIFRTMPN---KSLISWNS- 406 (496)
Q Consensus 345 ---l~~~~~~~-~---~~~~a~~~~~~~~~~~~---~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~- 406 (496)
+-+..+.. . +...=+.+|..+...|. .....|+. -+-+.|. -++|+++++.+.+ -|...-|.
T Consensus 341 ~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v 420 (549)
T PF07079_consen 341 PKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV 420 (549)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH
Confidence 11222211 1 11222333443332222 12233333 3445555 7788888888765 23322222
Q ss_pred ---HHHHHHh---CCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHH--HhccCchhhHHHHHHHHHHcCCCchHHHH
Q 010961 407 ---MIVGLSQ---NGSPIEALDLFCNMNKLDLRMD----KFSLASVISA--CANISSLELGEQVFARVTIIGLDSDQIIS 474 (496)
Q Consensus 407 ---l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 474 (496)
+=.+|.. ...+.+-+.+-+-..+.|++|- ...-+.|.+| +...|++.++.-.-..+.+ +.|++.+|
T Consensus 421 ~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~ 498 (549)
T PF07079_consen 421 FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAY 498 (549)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHH
Confidence 2223322 2233444444445567788773 3345555555 4567999988877666655 77899999
Q ss_pred HHHHHHHHhcCChHHHHHhhh
Q 010961 475 TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.-++-++....++++|..++.
T Consensus 499 RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 499 RLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999998875
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.73 E-value=0.01 Score=50.89 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHH-H---HHHHHHHHHccchHHHHHHHHHHHHHcCCC
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF-I---LATVIGACADLAALEYGKQIHSHILVNGLD 204 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 204 (496)
.+-.....+.+.|++++|++.|+++.. ..|+.. . ...+..++.+.++++.|...+++..+..+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 333445555667788888888887776 223221 1 234456667777777777777777765544
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.70 E-value=0.00049 Score=63.02 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-C-----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN-K-----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
+.....+++.+....+++.+..++.+... | -..|..++++.|...|..+.++.+++.=...|+-||..+++.|+
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 33444455555555556666666555543 2 22455688888888888888888888888888888989999999
Q ss_pred HHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 484 (496)
+.+.+.|++..|.++...|...+...++.++.--+.++.+.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 98888899988888888777666656666665555555554
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.00089 Score=51.65 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=86.7
Q ss_pred HHHHHHhcc-cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCC
Q 010961 358 ACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLR 433 (496)
Q Consensus 358 a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 433 (496)
.+.++..+. +.+....-.+...+...|++++|.++|+-+.. | +...|-.|..++-..|++.+|+..|....... +
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ 100 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-I 100 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 345555555 55555666677788899999999999998764 4 55678888889999999999999999998875 4
Q ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 434 MDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 434 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
-|+..+-.+..++...|+.+.|.+.|+..+..
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888999999999999999999999977663
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00048 Score=49.32 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.+...+...|++++|...++.+.+ | +...+..+...+...|++++|.+.+++..... +.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 344444555555555555555432 1 22344444555555555555555555554432 2233344445555555555
Q ss_pred hhhHHHHHHHHH
Q 010961 452 LELGEQVFARVT 463 (496)
Q Consensus 452 ~~~a~~~~~~~~ 463 (496)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 162
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.65 E-value=0.00057 Score=55.30 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCChhhHHHHHHHHHh-----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------------CchhhHH
Q 010961 398 NKSLISWNSMIVGLSQ-----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI----------------SSLELGE 456 (496)
Q Consensus 398 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~ 456 (496)
..+-.+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3555666666666653 355666666777777777777777777777776441 2345677
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 457 QVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
++++.|+..|+-||..++..|++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 788888888888888888888888766553
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=5.6e-05 Score=52.82 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHH
Q 010961 414 NGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (496)
.|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788899999999888632 12445566688889999999999999987 33222 234555566888899999999998
Q ss_pred hhh
Q 010961 493 YLM 495 (496)
Q Consensus 493 ~~~ 495 (496)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0022 Score=56.50 Aligned_cols=136 Identities=17% Similarity=0.065 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH-HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT-YSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 381 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 381 (496)
+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|...... |...++.+.|.++|+... +.+...|...++-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34555555555555666666666655332 2223333333333 222344444666666555 445555555566666
Q ss_pred hcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPN--K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVIS 444 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 444 (496)
..|+.+.|..+|++... + ....|...+..-.+.|+.+.+.++.+++.+. -|+...+..++.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 66666666666666554 1 2246777777777777777777777777664 333333333333
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.0011 Score=60.87 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC-C-----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTD-T-----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
....+++.+....+++.+..++.+... | -+.+..++++.|...|..+.++.+++.=...|+-||..+++.|+..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 334444444444445555554444332 1 1345678889999999999999999888888999999999999999
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
+.+.|++..|.++...|...+...++.++...+.++.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999988888877666666666666555554
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0013 Score=49.64 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
+..+..++.+.|++++|.+.|+.+.... .+.......+..+..++...|+.+.|.+.++++.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3334444444455555555554444310 000001223333344444444444444444444443
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.00079 Score=54.63 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=52.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHH
Q 010961 39 STLPIANRLLQMYMRCGNPTDALLLFDEMPR--RN----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNML 109 (496)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 109 (496)
.....+..+...+...|++++|...|++..+ ++ ...+..+..++.+.|++++|...+++..+ .+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3333566677777777888888887777653 22 24566677777777777777777776655 234445555
Q ss_pred HHHHHhcCChhHH
Q 010961 110 ISGFAKAGELKTA 122 (496)
Q Consensus 110 ~~~~~~~~~~~~a 122 (496)
...+...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 5566555554433
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00075 Score=48.26 Aligned_cols=90 Identities=13% Similarity=0.004 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (496)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 4455666777777888888777776652 33445666677777777778888877777766542 234566777777777
Q ss_pred cCChHHHHHhhh
Q 010961 484 CGFIKMDEYYLM 495 (496)
Q Consensus 484 ~g~~~~A~~~~~ 495 (496)
.|+.++|.+.++
T Consensus 81 ~~~~~~a~~~~~ 92 (100)
T cd00189 81 LGKYEEALEAYE 92 (100)
T ss_pred HHhHHHHHHHHH
Confidence 777777776654
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.00047 Score=48.10 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=8.0
Q ss_pred HHHHHHhcCChhhHHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFS 363 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~ 363 (496)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3444444444444444443
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.54 E-value=0.003 Score=48.82 Aligned_cols=91 Identities=7% Similarity=-0.081 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 413 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 413 (496)
...-.+...+...|++++|.++|+.+. +.+..-|-.|..++-..|++++|+..|..... .++.++-.+..++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 334445556678899999999998877 44566777888888889999999999988653 466788888899999
Q ss_pred CCChhhHHHHHHHHHhC
Q 010961 414 NGSPIEALDLFCNMNKL 430 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~ 430 (496)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999998877653
No 171
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0049 Score=51.26 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH-----H
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA-----L 345 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 345 (496)
..+.++..+...|.+.-.+..+++.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666777778888888888888776666777777777777888888888888887766433333322222 2
Q ss_pred HHHHHhcCChhhHHHHHHhcc
Q 010961 346 LDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...|.-.+++..|...+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred hhheecccchHHHHHHHhhcc
Confidence 233444455555555555444
No 172
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.53 E-value=0.067 Score=48.56 Aligned_cols=129 Identities=12% Similarity=0.200 Sum_probs=82.0
Q ss_pred hccCccchhhhhhHHHHHhccCCCch-----HHHHHHHHHHHhcCChHHHHHHhhhCCC-CChhhHHHHHHHHH--hcCC
Q 010961 16 NTHHSIHVGKQLHLHFLKKGILNSTL-----PIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFM--KLGH 87 (496)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~--~~~~ 87 (496)
.+++++.++..+|..+.+..- .+++ -..+.++++|.- .+.+.....+....+ -....|-.+..++. +.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 357899999999998886532 2222 023456666643 445555544444443 12445666665543 7788
Q ss_pred HHHHHHHHhhCCC------------------CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--------CCcccHHHHH
Q 010961 88 KEKSLQLFNVMPQ------------------KNDFSWNMLISGFAKAGELKTARTLFNDMPR--------RNAIAWNSMI 141 (496)
Q Consensus 88 ~~~a~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li 141 (496)
+++|++.+..... +|..-=+..+.++...|++.++..+++++.+ -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 9999988765543 1112225667888899999999999988863 3777888865
Q ss_pred HHHHH
Q 010961 142 HCYVR 146 (496)
Q Consensus 142 ~~~~~ 146 (496)
-.+.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 55544
No 173
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0016 Score=49.12 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCCHHHHHHH
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTMPN--KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--RMDKFSLASV 442 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~l 442 (496)
.++..++..+.+.|++++|.+.|+.+.+ |+ ...+..+...+.+.|+++.|...++.+....- +.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566777888899999999999988864 33 24566788899999999999999999887521 1124567778
Q ss_pred HHHHhccCchhhHHHHHHHHHHcCC
Q 010961 443 ISACANISSLELGEQVFARVTIIGL 467 (496)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~~~ 467 (496)
..++...|+++.|...++.+.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8888899999999999999888653
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.51 E-value=0.0015 Score=52.93 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=75.3
Q ss_pred HHHHhc--CCCCcchHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 010961 259 RVFDRT--TDTSSVMWNSMISGYIS-----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL-------------- 317 (496)
Q Consensus 259 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-------------- 317 (496)
..|++. ...+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 33456667777766654 477788888899999999999999999999987652
Q ss_pred --cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 318 --GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 318 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
.+-+-|..++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2347789999999999999999999999999976654
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.45 E-value=0.0053 Score=49.80 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
.+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455555566666666666666666655322221 2345555556666666666666666666543 2234444455555
Q ss_pred HHhcCCh
Q 010961 349 YSKRGMP 355 (496)
Q Consensus 349 ~~~~~~~ 355 (496)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555553
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0057 Score=53.91 Aligned_cols=125 Identities=9% Similarity=0.067 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-cCChhhHHHHHHhcCC---CChHHHHHHHHHH
Q 010961 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-CGDFNSANQVLNMMKE---PDDFCLSALISGY 248 (496)
Q Consensus 173 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 248 (496)
.+|..+++..-+.+..+.|..+|.+..+.+. .+..+|......-.. .++.+.|.++|+...+ .+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3566666777777777777777777764332 233444443333222 4556667777777664 4556677777777
Q ss_pred HhcCChhHHHHHHHhcCCC--C----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 249 ANCGKMNDARRVFDRTTDT--S----SVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
...++.+.|..+|++.... . ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777766551 1 236777777767777777777777777763
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.0014 Score=52.92 Aligned_cols=57 Identities=16% Similarity=0.021 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RN----CFSWNAMIEGFMKLGHKEKSLQLFNVMP 99 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (496)
.+..+...+...|++++|+..|++... ++ ..+|..+..++...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555555554431 11 1234444455555555555555554443
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.36 E-value=0.071 Score=45.81 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=27.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455556666666655555553 1111233444555555555555555554443
No 179
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0018 Score=59.21 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=55.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREA 153 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a 153 (496)
..+...|++++|++.|+++.+ .+...|..+..++.+.|++++|+..++++.. | +...|..+..+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 334455666666666666554 2344555555666666666666666666543 2 344566666667777777777
Q ss_pred HHHHHHHHHchhccCCcCHHHHHHHH
Q 010961 154 VRLFKELNSDLVERLQCDAFILATVI 179 (496)
Q Consensus 154 ~~~~~~~~~~~~~~~~p~~~~~~~ll 179 (496)
+..|++..+ ..|+.......+
T Consensus 90 ~~~~~~al~-----l~P~~~~~~~~l 110 (356)
T PLN03088 90 KAALEKGAS-----LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHH-----hCCCCHHHHHHH
Confidence 777777666 445444443333
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.014 Score=43.47 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC--chHHHHHHHHHHHH
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACSSLGFLEHGKQVHGHACKVGVI--DDVIVASALLDTYS 350 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 350 (496)
...++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888888776554 334555666777888888888888877764211 12222333444666
Q ss_pred hcCChhhHHHHHHhcccCchhhHHHHHHHH
Q 010961 351 KRGMPSDACKLFSELKVYDTILLNTMITVY 380 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 380 (496)
..|+.++|++.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888887777655444433444433333
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.33 E-value=0.055 Score=51.23 Aligned_cols=203 Identities=11% Similarity=0.075 Sum_probs=98.4
Q ss_pred HHHHHHHHccchHH--HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCC--hHHHHH-----HHH
Q 010961 176 ATVIGACADLAALE--YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPD--DFCLSA-----LIS 246 (496)
Q Consensus 176 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~-----l~~ 246 (496)
+..-.+|.+..+.. +..--++++++.|-.|+... +...++-.|.+.+|-++|.+--..+ ...|+- ...
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence 33334444444433 33334556677777666543 3344555677777777776654322 111111 122
Q ss_pred HHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHh
Q 010961 247 GYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFH------KMRRNGV---LEDASTLASVLSACS 315 (496)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~------~m~~~g~---~~~~~~~~~l~~~~~ 315 (496)
-+...|..++-..+.++--+ .+..--.+....+...|+.++|..+.- .+.+.+- ..+..+...+...+.
T Consensus 679 E~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk 758 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK 758 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence 23333333333333321110 111111223344556677777665431 1122222 223344444455555
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAK 390 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (496)
+...+..|-++|..|-+. ..+++.....++|++|..+-++..+--+..|-...+-++...++++|.
T Consensus 759 ~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred hccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH
Confidence 666777777777766432 346677777888888888887766433333333333344444444443
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0015 Score=55.42 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC---cccHHHHHHHHHHcCCHHHHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN---AIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~ 154 (496)
-+.+.+++.+|+..|.+..+ .|..-|..-..+|.+.|.++.|++-.+....-| ..+|..|..+|...|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 45677889999999888876 456777888888999999998888888777644 347888888999999999999
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHH
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGA 181 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~ 181 (496)
+.|++... +.|+..+|..-++.
T Consensus 170 ~aykKaLe-----ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 170 EAYKKALE-----LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHhhhc-----cCCCcHHHHHHHHH
Confidence 99888877 88887776655544
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.32 E-value=0.0031 Score=55.86 Aligned_cols=123 Identities=15% Similarity=0.047 Sum_probs=85.1
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHH----HcCCCc-chhHHHHHHHHHHhcCChhhHHHHHHhcC-------C--CChHH
Q 010961 175 LATVIGACADLAALEYGKQIHSHIL----VNGLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMK-------E--PDDFC 240 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~--~~~~~ 240 (496)
|..|-..|.-.|+++.+....+.-+ +.|-.. ....+..+.+++.-.|+++.|.+.|+... + ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555678888877665433 333222 23467788888999999999998887643 1 23445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC---------CCcchHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTD---------TSSVMWNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
..++.+.|.-...+++|+.++.+... ....++-.+..+|...|..++|+.+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66778888888889999988876443 1245777888999999999998887665543
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0086 Score=48.37 Aligned_cols=63 Identities=16% Similarity=-0.044 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLE--DASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+....+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555555566666666666555432111 1234555555555666666666666655543
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.26 E-value=0.0038 Score=55.34 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=72.2
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHhcccchhhHHHHHHHHH----HcCC-CchH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKM----RRNGVL-EDASTLASVLSACSSLGFLEHGKQVHGHAC----KVGV-IDDV 339 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~ 339 (496)
.+|..+.+.|.-.|+++.|+..-+.= ++-|-+ .....+..+.+++.-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666666677777776543321 222222 223455566666777777777777776543 2221 1233
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcc---------cCchhhHHHHHHHHHhcCCHHHHHHHHhh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELK---------VYDTILLNTMITVYSSCGRIEDAKHIFRT 395 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (496)
.+.-+|...|.-..++++|+.++.+-. .-....+-+|..+|...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 444556666766677777777665433 11234566677777777777777665544
No 186
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.26 E-value=0.004 Score=57.04 Aligned_cols=85 Identities=8% Similarity=-0.115 Sum_probs=49.2
Q ss_pred HHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhh
Q 010961 346 LDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 419 (496)
...+...|++++|++.|++.. +.+...|..+..+|...|++++|+..++++.+ | +...|..+..+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344555667777777666665 33444555555566666666666666665543 2 33455555566666666666
Q ss_pred HHHHHHHHHhC
Q 010961 420 ALDLFCNMNKL 430 (496)
Q Consensus 420 a~~~~~~m~~~ 430 (496)
|...|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666665553
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.23 E-value=0.017 Score=54.50 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHh
Q 010961 171 DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYAN 250 (496)
Q Consensus 171 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 250 (496)
+..+...+...+.+...+..|-++|..|-. ...++..+...++|++|..+-+..++--...|-...+-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 334555555555666667777777776643 23567777788888888888888776333334444444444
Q ss_pred cCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 251 CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
..++++|.+ +|.+.|+..+|.++++++...
T Consensus 817 ~DrFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 445544433 344566666666666665543
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.22 E-value=0.068 Score=42.29 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=40.3
Q ss_pred CCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
+.|+...-..|..+....|+..+|...|++...--..-|......+.++....+++..|...++.+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 44555555555666666666666666666655433444555555666666666666666666666553
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.0031 Score=53.69 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=60.0
Q ss_pred HHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCch---hhHHHHHHHHHhcCCHHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT---ILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 389 (496)
-+.+.+++++|...|.++++.. +.|+..|..-..+|++.|.++.|++-.+.....|+ .+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3556677777777777777753 44556666667777777777777776666664333 3566677777777777777
Q ss_pred HHHHhhCCC--CChhhH
Q 010961 390 KHIFRTMPN--KSLISW 404 (496)
Q Consensus 390 ~~~~~~~~~--~~~~~~ 404 (496)
++.|++..+ |+-.+|
T Consensus 169 ~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHhhhccCCCcHHH
Confidence 777777664 444443
No 190
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.27 Score=47.68 Aligned_cols=107 Identities=16% Similarity=0.098 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (496)
+.+-.+.-+...|+..+|.++-.+.. .||...|-.-+.+++..++|++-+++-+...+ +.-|...+.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhccc
Confidence 33444444455555555555544332 34555555555566666666555555444332 4445555555666666
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHH
Q 010961 386 IEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
.++|.+.+-+...-. -.+.+|.+.|++.+|.+.
T Consensus 760 ~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHH
Confidence 666655555443311 234455555555555443
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.01 Score=44.21 Aligned_cols=100 Identities=20% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc----hhhHHHHHHHHH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVIDD--VIVASALLDTYSKRGMPSDACKLFSELK--VYD----TILLNTMITVYS 381 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~----~~~~~~l~~~~~ 381 (496)
+..++-..|+.++|..+|+.....|.... ...+-.+...+...|++++|..++++.. .|+ ......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456678899999999999988876554 3345566777788888888888887665 122 112222233444
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLISWNSMIV 409 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 409 (496)
..|+.++|...+-....++...|.--|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544433333333333333
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.12 E-value=0.083 Score=41.81 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
-|+...-..|..++...|+..+|...|.+...--+..|..+.-.+.++....+++..|...++++.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 455555555556666666666666666666554445556666666666666666666666665544
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.31 Score=47.33 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
+.+--+.-+...|+-.+|.++-.+..-|+-..|-.-+.+++..+++++-.++-+.++ .+.-|.-++.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 455666777888999999999999888888888888889999999887776665544 24457778888999999
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
.++|.+++-+.-. . + -...+|.++|++.+|.+.
T Consensus 760 ~~EA~KYiprv~~--l---~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG--L---Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHHhhhhhccCC--h---H----HHHHHHHHhccHHHHHHH
Confidence 9999988766421 1 1 467889999999988775
No 194
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.2 Score=45.03 Aligned_cols=88 Identities=10% Similarity=-0.029 Sum_probs=42.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 278 GYISNNEDTEALLLFHKMRRN---GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
-..+.|++..|.+.|.+.+.. .+.|+...|........+.|+..+|..--+...+.. ..-...+..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 344666677777777666543 233444445555555556666666665555544421 0001112222233334455
Q ss_pred hhhHHHHHHhcc
Q 010961 355 PSDACKLFSELK 366 (496)
Q Consensus 355 ~~~a~~~~~~~~ 366 (496)
|++|.+-|+...
T Consensus 337 ~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 337 WEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.0018 Score=42.92 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=32.3
Q ss_pred ccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC
Q 010961 17 THHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
..|++++|..+++.+.+.. |+..++...+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677777777776665 33443566677777777777777777776654
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.03 E-value=0.22 Score=44.43 Aligned_cols=300 Identities=12% Similarity=0.009 Sum_probs=182.7
Q ss_pred ccchhhhhhHHHHHhccCCCchHHHHHHHHHHHh--cCChHHHHHHhhhCC---CCChhhHHHHHHH--HHhcCCHHHHH
Q 010961 20 SIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMR--CGNPTDALLLFDEMP---RRNCFSWNAMIEG--FMKLGHKEKSL 92 (496)
Q Consensus 20 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~ 92 (496)
.+..+.++|..-.+.. .|..|-.++.- .|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 3556666666655543 45555555543 577778877766544 3566655555544 34569999999
Q ss_pred HHHhhCCC-CChhh--HHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhc
Q 010961 93 QLFNVMPQ-KNDFS--WNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVE 166 (496)
Q Consensus 93 ~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 166 (496)
+-|+.|.. |.... ...|.-.--+.|..+.|..+-++... | -...+...+...+..|+|+.|+++++.-+.. .
T Consensus 141 ~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~--~ 218 (531)
T COG3898 141 KKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA--K 218 (531)
T ss_pred HHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH--H
Confidence 99999987 33321 11222223467888888888777654 3 3567889999999999999999999887764 3
Q ss_pred cCCcCHHH--HHHHHHH--HHc-cchHHHHHHHHHHHHHcCCCcchh-HHHHHHHHHHhcCChhhHHHHHHhcCC--CCh
Q 010961 167 RLQCDAFI--LATVIGA--CAD-LAALEYGKQIHSHILVNGLDFDSV-LGSSLVNLYGKCGDFNSANQVLNMMKE--PDD 238 (496)
Q Consensus 167 ~~~p~~~~--~~~ll~~--~~~-~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 238 (496)
-+.++..- -..|+.+ ... ..+...+...-.+..+. .|+.. .-..-...+.+.|+..++-.+++.+-+ |.+
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 34555432 2222222 111 12445555555555443 33332 223345678888999999888888765 443
Q ss_pred HHHHHHHHHHHhcCChhHH----HHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 239 FCLSALISGYANCGKMNDA----RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
..+. +..+.+.|+.-.. .+-++.|...+..+.-.+..+....|++..|..--+.... ..|....|..+...-
T Consensus 297 ~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIe 372 (531)
T COG3898 297 DIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIE 372 (531)
T ss_pred HHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHH
Confidence 3333 3334455543211 1234455556666666777777777777777665555544 366677776666653
Q ss_pred h-cccchhhHHHHHHHHHHcC
Q 010961 315 S-SLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 315 ~-~~~~~~~a~~~~~~~~~~~ 334 (496)
. ..|+-.++.+.+.+..+..
T Consensus 373 eAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hhccCchHHHHHHHHHHhcCC
Confidence 3 4477777777777776653
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0034 Score=41.76 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-chhhHHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTI 464 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 464 (496)
+..+|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.++..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566667777777777777777777776652 335556666777777777 57777777776655
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.033 Score=53.52 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|...+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456666666666678888888888888876 4677788888888888888888888888776643
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.97 E-value=0.0051 Score=40.74 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
|+++.|.++++.+.+..+. +..+...+..+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444443322 33344445555555555555555555544
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.94 E-value=0.0046 Score=40.51 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+...+...|++++|.+.|++..+.. +-+...+..+..++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777788888888888887764 335667777777778888888888888877664
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.94 E-value=0.3 Score=44.48 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcC-CCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHH
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYS 381 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 381 (496)
.|...++.-.+..-++.|+.+|-++.+.| +.+++.++++++..++ .|+..-|..+|+--. +.++....-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34456666667778899999999999888 5678888898888765 577788888888655 334444456677778
Q ss_pred hcCCHHHHHHHHhhCCC---CC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPN---KS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
..++-+.|..+|+.... .+ -..|..+|.--..-|+...+..+=++|.+. -|...+-....
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 88999999999986554 22 357888888888888888888888887764 44433333333
No 202
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.93 E-value=0.074 Score=39.41 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-CChH---HHHHHHHHHHhcCChhHHHHH
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDF---CLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~a~~~ 260 (496)
.|..++..++..+...+. +..-+|-++.-....-+-+-..++++.+-+ -|.. -...++.+|...|..
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~------ 85 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL------ 85 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch------
Confidence 455556666665555443 333444444444444444445555554443 1111 123344444444433
Q ss_pred HHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC
Q 010961 261 FDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336 (496)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 336 (496)
.......+.....+|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 86 --------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 --------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556677888889999988888888764 3778888888899999999999999999999988854
No 203
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.031 Score=53.74 Aligned_cols=139 Identities=12% Similarity=0.031 Sum_probs=88.7
Q ss_pred CCCCCHHHHHHHHHHHhc-----ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC--------ChhhHHHHHHhc
Q 010961 299 GVLEDASTLASVLSACSS-----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG--------MPSDACKLFSEL 365 (496)
Q Consensus 299 g~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 365 (496)
+.+.+...|...+++... .++.+.|..+|+++.+.. +.....+..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345566777777766432 233667777777777753 222333333333332211 122333333332
Q ss_pred c-----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHH
Q 010961 366 K-----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438 (496)
Q Consensus 366 ~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 438 (496)
. +.++..|..+.-.....|++++|...+++... |+...|..+...+...|++++|.+.+++.... .|...|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 1 33456677776667778999999999998875 77788999999999999999999999998875 565445
Q ss_pred HH
Q 010961 439 LA 440 (496)
Q Consensus 439 ~~ 440 (496)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.14 Score=42.98 Aligned_cols=134 Identities=11% Similarity=0.039 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC----CChHHHH-----H
Q 010961 173 FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFCLS-----A 243 (496)
Q Consensus 173 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~-----~ 243 (496)
...+.+++.+...|.+.-....+.+..+...+.++.....|++.-.+.||.+.|...|+...+ -|..+.+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 355667777777788888888888888877677777778888888888888888888886553 2222222 2
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010961 244 LISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA 308 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 308 (496)
....|.-.+++..|...+.+.+.. ++..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 334456667777888888776653 3455555555566678899999999999885 44443333
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.86 E-value=0.085 Score=44.07 Aligned_cols=61 Identities=13% Similarity=-0.035 Sum_probs=31.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
....+...|++.+|++.|+.+... .+..| -......++.++.+.|+++.|...++..++.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344555666666666666666653 11111 12334444556666666666666666665543
No 206
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.85 E-value=0.68 Score=47.66 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHhhCCCCChhh---HHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 382 SCGRIEDAKHIFRTMPNKSLIS---WNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.+|++++|..+..++..+-... -..|+.-+...+++-+|-++..+...
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 4566666666666665432222 24555666666666666666665543
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.80 E-value=0.18 Score=42.17 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=23.0
Q ss_pred HHHHhccCchhhHHHHHHHHHHcC--CCchHHHHHHHHHHHHhcCChHHH
Q 010961 443 ISACANISSLELGEQVFARVTIIG--LDSDQIISTSLVDFYCKCGFIKMD 490 (496)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 490 (496)
..-|.+.|.+..|..-++.+++.= .+........++.+|.+.|..+.|
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344555666666666666555431 111223444555666666655543
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.75 E-value=0.011 Score=39.14 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccc-hHHHHHHHHHHHHH
Q 010961 134 AIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLA-ALEYGKQIHSHILV 200 (496)
Q Consensus 134 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 200 (496)
+..|..+...+...|++++|+..|++..+ ..| +...+..+..++...| ++++|.+.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE-----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH-----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34555666666666666666666666665 233 3344555555555555 56666666655554
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.71 E-value=0.017 Score=45.30 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-----HcCCCchHHHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-----IIGLDSDQIIST 475 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 475 (496)
....++..+...|++++|..+.+++.... |-|...|..++.++...|+...|.++|+.+. +.|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556677778888888888888888763 5577788888888888888888888888653 468888876644
No 210
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.69 E-value=0.013 Score=38.34 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=26.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 142 HCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
..+.+.|++++|.+.|++..+ ..| +...+..+..++...|++++|...++.+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALK-----QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHC-----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555554 223 333444444555555555555555555544
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.16 Score=45.94 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---------ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS---------LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
.|+.++|++++..+......+++.+|..+.+.|-. ...+++|...|.+.-+.. |+...--.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHc
Confidence 77888888888876655567777777766655421 122445555555443322 2222222222222233
Q ss_pred CChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 353 GMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 353 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|...+...-..++. ..++ ..+.+.|..+ ...+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 273 g~~~~~~~el~~i~----~~l~---~llg~kg~~~---------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIG----VKLS---SLLGRKGSLE---------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHH----HHHH---HHHHhhcccc---------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 32211111111110 0011 1111111100 1145566778888888899999999999999876
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.2 Score=45.38 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCC---C----cccHHHHHHHHHH---cCCHHHHHHHHHHHHHchhccCCcCHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPRR---N----AIAWNSMIHCYVR---NGFAREAVRLFKELNSDLVERLQCDAFIL 175 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~p~~~~~ 175 (496)
...++-+|....+++...++.+.+... + ...-....-++-+ .|+.++|++++..+.. ....+++.+|
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~---~~~~~~~d~~ 220 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE---SDENPDPDTL 220 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---ccCCCChHHH
Confidence 334555677888888888888888763 1 1122234445556 7889999999888555 3466777788
Q ss_pred HHHHHHHHc---------cchHHHHHHHHHHHH
Q 010961 176 ATVIGACAD---------LAALEYGKQIHSHIL 199 (496)
Q Consensus 176 ~~ll~~~~~---------~~~~~~a~~~~~~~~ 199 (496)
..+.+.|-. ....++|...|.+.-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 877776532 123455555555443
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.56 E-value=0.03 Score=48.54 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=51.7
Q ss_pred HhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCch
Q 010961 381 SSCGRIEDAKHIFRTMPN--KSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMDKFSLASVISACANISSL 452 (496)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~ 452 (496)
.+.|++++|...|+.+.+ |+. ..+-.+...|...|++++|...|+.+.+.- -+.....+..+...+...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555543 322 355566777777777777777777776541 011233444455566677778
Q ss_pred hhHHHHHHHHHHcC
Q 010961 453 ELGEQVFARVTIIG 466 (496)
Q Consensus 453 ~~a~~~~~~~~~~~ 466 (496)
++|..+++.+++..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 88888777776643
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.52 E-value=0.63 Score=42.52 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=80.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK-FSLASVI 443 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~ 443 (496)
...|...++.-.+...++.|..+|-+..+ +++..+++++..++. |++..|..+|+--... -||. .--.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34566777777788888888888887765 566778888876664 6777888888875554 3443 3334455
Q ss_pred HHHhccCchhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChHHHH
Q 010961 444 SACANISSLELGEQVFARVTIIGLDSD--QIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 491 (496)
.-+.+.++-+.|..+|+..+.. +.-+ ..+|..+++-=..-|+++.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHH
Confidence 6667778888888888854432 1112 467777777777777775554
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.087 Score=45.37 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC---CHHHHHHHHhhCCC---CChhhHHH
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCG---RIEDAKHIFRTMPN---KSLISWNS 406 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~ 406 (496)
+.|..-|-.|..+|...|+.+.|..-|.+.. ++++..+..+..++.... ...++..+|+++.. .|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4456666666666666666666666666554 445555555555443322 23445556655553 23445555
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhC
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 566666667777777777776665
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.83 Score=45.19 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=34.4
Q ss_pred HHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHH
Q 010961 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHI 392 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 392 (496)
-++..+....+++.+..+.+...+.++..|..+++.+++.+..+.-.+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~ 758 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEI 758 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHH
Confidence 3555666777777777777777777788888888888877765544433
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.46 E-value=0.62 Score=41.76 Aligned_cols=284 Identities=13% Similarity=0.062 Sum_probs=184.9
Q ss_pred HHHHHhhhhc--cCccchhhhhhHHHHHhccCCCchHHHHHHHH--HHHhcCChHHHHHHhhhCCC-CChh--hHHHHHH
Q 010961 8 LARLLQSCNT--HHSIHVGKQLHLHFLKKGILNSTLPIANRLLQ--MYMRCGNPTDALLLFDEMPR-RNCF--SWNAMIE 80 (496)
Q Consensus 8 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~l~~ 80 (496)
|..|-.++.. .|+-..|.++-.+..+.- ..+.. .+..|+. .-.-.|++++|.+-|+.|.. |... -...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~ll-ssDqe-pLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLL-SSDQE-PLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhh-hccch-HHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 4444444443 567777777766655432 12222 3333443 33456999999999999986 3222 2233333
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChhHHHHHHhhcCC-----CCccc--HHHHHHHHH---Hc
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ--KN-DFSWNMLISGFAKAGELKTARTLFNDMPR-----RNAIA--WNSMIHCYV---RN 147 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~li~~~~---~~ 147 (496)
.--+.|+.+.|...-+..-. |. ...+...+...+..|+++.|+++++.-.. ++..- -..|+.+-. -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 34477999999998887765 32 45678888999999999999999987653 33321 222332221 12
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCHHHHH-HHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDAFILA-TVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.+...|.+.-.+..+ ..||-..-. ...+++.+.|+..++-.+++.+-+..++|+. ..+..+.+.|+....
T Consensus 243 adp~~Ar~~A~~a~K-----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~d 313 (531)
T COG3898 243 ADPASARDDALEANK-----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDTALD 313 (531)
T ss_pred CChHHHHHHHHHHhh-----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHHH
Confidence 356666666666655 667654433 3347889999999999999999998887764 233445566654322
Q ss_pred ----HHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHH-hCCCHHHHHHHHHHHHHCC
Q 010961 227 ----NQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYI-SNNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 227 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g 299 (496)
.+-++.|+..+..+.-.+..+-...|++..|..--+.... |....|..|...-. ..|+-.++...+.+..+.-
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 1335556667778888888899999999888776665544 55566766666544 4499999999988887754
Q ss_pred CCC
Q 010961 300 VLE 302 (496)
Q Consensus 300 ~~~ 302 (496)
-.|
T Consensus 394 rdP 396 (531)
T COG3898 394 RDP 396 (531)
T ss_pred CCC
Confidence 334
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.45 E-value=0.016 Score=38.90 Aligned_cols=57 Identities=16% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
..|.+.+++++|.++++++...+ |.++..+.....++...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46778888888888888888863 4466777778888888888888888888887754
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=1.1 Score=44.42 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPRRNA---IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
...-+..+.+..-++-|..+-+.-..+.. .......+.+.+.|++++|...|-+-... +.|. .++.-+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~----le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF----LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc----CChH-----HHHHHh
Confidence 34455556666666666666554433211 12333445566778888888877666542 4443 345556
Q ss_pred HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChH-HHHHHHHHHHhcCChhHHHHHH
Q 010961 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF-CLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
.........-.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+-
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 6667777777888888888876 5555678888888888888888888776632111 2344555555555555555554
Q ss_pred HhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 262 DRTTDTSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
.+... .......+ +-..+++++|++++..+
T Consensus 487 ~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 44333 22222222 23456666766666543
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.42 E-value=0.045 Score=47.43 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCC--CCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPR--RNA----IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATV 178 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l 178 (496)
|......+.+.|++++|...|+.+.+ |+. .++..+..+|...|++++|...|+.+.+. .+..| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHH
Confidence 33333333445666666666665553 322 34555556666666666666666666542 01111 12233333
Q ss_pred HHHHHccchHHHHHHHHHHHHHc
Q 010961 179 IGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
..++...|+.+.|..+++.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 221
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.71 Score=41.74 Aligned_cols=257 Identities=12% Similarity=-0.011 Sum_probs=121.7
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHH
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKE 89 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 89 (496)
..+-....+..|...+...++..+.. .+.|..-+..+...|++++|.--.+.-.+ .....+...-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~--a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDN--ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccc--hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34445566777777777777776443 22455455556666666666544433322 11112222233333333333
Q ss_pred HHHHHHh---------------hCCC-----CChhhHHHH-HHHHHhcCChhHHHHHHhhcCCCCc-ccHHHHHH--HHH
Q 010961 90 KSLQLFN---------------VMPQ-----KNDFSWNML-ISGFAKAGELKTARTLFNDMPRRNA-IAWNSMIH--CYV 145 (496)
Q Consensus 90 ~a~~~~~---------------~~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~--~~~ 145 (496)
+|.+.++ .... |.-.+|..+ ..++...|+.++|...--.+.+-|. ..+..+++ ++.
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc
Confidence 3333322 1111 111222222 2344556666666665555544322 22333332 333
Q ss_pred HcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhh
Q 010961 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNS 225 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (496)
-.++.+.|+..|++..+ ..|+...-..+-. ..+.++.+... .+-..+.|.+..
T Consensus 215 y~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~----------~~k~le~~k~~------------gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALR-----LDPDHQKSKSASM----------MPKKLEVKKER------------GNDAFKNGNYRK 267 (486)
T ss_pred cccchHHHHHHHhhhhc-----cChhhhhHHhHhh----------hHHHHHHHHhh------------hhhHhhccchhH
Confidence 45667777777776665 4454433222111 11111111111 122345566666
Q ss_pred HHHHHHhcCC-------CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcc---hHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 226 ANQVLNMMKE-------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV---MWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 226 a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
|.+.|.+... ++...|........+.|+..+|+.-.+.....|+. .|..-..++...++|++|.+-|+..
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666553 22333444444455666666666666666555443 2222234555667777777777766
Q ss_pred HHC
Q 010961 296 RRN 298 (496)
Q Consensus 296 ~~~ 298 (496)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 554
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.36 E-value=0.039 Score=46.67 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHh-----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------------chhhHHH
Q 010961 399 KSLISWNSMIVGLSQ-----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS----------------SLELGEQ 457 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~~ 457 (496)
.+-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. .-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455556555555543 2445555666777777788778888887777764422 2345677
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 458 VFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
+++.|..+|+.||..+-..|+.++.+.|-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 88888888888888888888888877664
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.33 E-value=0.26 Score=46.42 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=99.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (496)
....-.++++.+.+....-.-..-.| ......+++.+.+.|..+.|.++..+ + ..-.....++|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHH
Confidence 44556788888777664111110012 44467777777888888888876543 2 12345566788888
Q ss_pred hHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 357 DACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
.|.++.++.. ++..|..|.......|+++-|++.|++..+ |..|.-.|...|+.+.-.++.+.....|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~----- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG----- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence 8888877654 566888888888888888888888888764 5567777788888887777777777665
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHH
Q 010961 437 FSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
-++....++.-.|+.++..+++..
T Consensus 404 -~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 -DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp --HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 244445555566787777766544
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.068 Score=45.99 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHH---ccchHHHHHHHHHHHHHcCCCcchhH
Q 010961 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA---DLAALEYGKQIHSHILVNGLDFDSVL 209 (496)
Q Consensus 133 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~ 209 (496)
|...|-.|...|...|+.+.|..-|....+. .| ++...+..+..++. ......++..+++++++.... +...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 6778888888888888888888888888774 22 33344444444443 233456777888888776544 6666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|...+...|++.+|...|+.|.+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66777777888888888888888775
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.27 E-value=0.24 Score=38.49 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=75.8
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhc
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKL 85 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (496)
.....++..+...+.+.....+++.+.+.+. .++. .++.++..|++.+ ..+.+..++. ..+......+++.|.+.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~-~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPA-LQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchh-HHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 3455667777777778888888888887763 3333 7888888887653 3444455542 23444555567777777
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhc-CChhHHHHHHhhcCCCCcccHHHHHHHHH
Q 010961 86 GHKEKSLQLFNVMPQKNDFSWNMLISGFAKA-GELKTARTLFNDMPRRNAIAWNSMIHCYV 145 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 145 (496)
+-++++.-++.++... ...+..+... ++++.|.+++.+-. +...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~-----~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNF-----KDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCH-----HHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 7777777777665431 1122222223 56666666666532 3445555555443
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.22 E-value=0.051 Score=42.40 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
....-+...|++++|..+|+-+.- -+..-|..|..++-..+++++|+..|...-..+ .-|+..+-....++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344456688999999999987653 355567777788888899999999998877654 3456666677788889999
Q ss_pred hhhHHHHHHHHHHc
Q 010961 452 LELGEQVFARVTII 465 (496)
Q Consensus 452 ~~~a~~~~~~~~~~ 465 (496)
.+.|...|+..++.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988773
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.21 E-value=0.35 Score=45.57 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHH
Q 010961 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFARE 152 (496)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 152 (496)
...+.++.-+-+.|.++.|+++... + ..-.....+.|+++.|.++.+... +...|..|.+...+.|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 3355566666666666666665432 1 223344455666666666655554 34466666666666666666
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
|.+.|++... +..|+-.+...|+.+...++.+.....|- ++....++...|+.++..+++.+
T Consensus 366 Ae~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 366 AEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666544 44455555556666666666655555442 23333444445666666555554
Q ss_pred cC
Q 010961 233 MK 234 (496)
Q Consensus 233 ~~ 234 (496)
..
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.19 E-value=0.0078 Score=41.16 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHc----CC-Cch-HHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 438 SLASVISACANISSLELGEQVFARVTII----GL-DSD-QIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+|+.+...|...|++++|...+++..+. |- .|+ ..++..+..+|.+.|++++|.++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555566666666666666644321 11 122 4556666666666777776666654
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.61 Score=38.93 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--------CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCC---CCCCHHHHH
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN--------KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLD---LRMDKFSLA 440 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~ 440 (496)
+......+.+...+++|-..+.+-.. ++. ..|-..|-.|....++..|...++.-.+-+ -+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33455566666666666555444332 121 234455556666677777777777644422 123556777
Q ss_pred HHHHHHhccCchhhHHHHHH
Q 010961 441 SVISACANISSLELGEQVFA 460 (496)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~ 460 (496)
.|+.+| ..||.+.+..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 777766 4477776665543
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.10 E-value=0.096 Score=39.46 Aligned_cols=51 Identities=6% Similarity=-0.005 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH-cCCCchHHHHHHHHHHHH
Q 010961 432 LRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 432 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 482 (496)
..|+..++.+++.+|+..|++..|.++++...+ .+++.+..+|..|++=..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677777777777777777777777775543 456666677776666443
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.06 E-value=0.046 Score=37.29 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCC---cC-HHHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ---CD-AFILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
.+|+.+...|...|++++|++.|++..+. ..... |+ ..++..+..++...|+++.|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888888777653 11111 22 3445555566666666666666666554
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.98 E-value=0.091 Score=44.54 Aligned_cols=99 Identities=11% Similarity=0.152 Sum_probs=73.2
Q ss_pred CCcchHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----------------chhhHHH
Q 010961 267 TSSVMWNSMISGYIS-----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG----------------FLEHGKQ 325 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 325 (496)
.|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 345556666655543 3556667777888999999999999999998765532 2356889
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChh-hHHHHHHhc
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPS-DACKLFSEL 365 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 365 (496)
++++|..+|+.||..+-..+++++.+.+-.- +...+.-.|
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 9999999999999999999999998887543 333444333
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.91 E-value=0.071 Score=41.81 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHH-----HcCCCcchhH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL-----VNGLDFDSVL 209 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 209 (496)
...++..+...|++++|+++.+.+... .+-+...+..++.++...|+...|.+.|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555566666666666666551 22244556666666666666666666665543 2466666544
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.85 E-value=0.51 Score=35.17 Aligned_cols=138 Identities=9% Similarity=0.117 Sum_probs=69.7
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-CchhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIFR 394 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (496)
-.|..++..++..+...+. +..-+|.++--....-+-+-..+.++.+-. -|.. ..|++......+-
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHHH
Confidence 3566666666666665542 333344444333333334444444444331 1111 1222222222222
Q ss_pred hCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 395 TMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
.+. .+.......+.....+|+-+.-.+++..+.+. -.|++....-+..+|.+.|+..++.+++.+.-+.|++
T Consensus 81 ~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 81 KRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred Hhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 221 22234455567777788888888888887653 3777888888888888888888888888888777764
No 235
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=2.4 Score=41.85 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=88.3
Q ss_pred HHHHHhcCChHHHHHHhhhCCC--C---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHH
Q 010961 48 LQMYMRCGNPTDALLLFDEMPR--R---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122 (496)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 122 (496)
++.+.+.+.+++|+...+.... + -...+...|..+...|++++|-.+.-.|...+..-|.--+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 5566666777777776665543 1 1234566666777777777777777777766666666666666665555433
Q ss_pred HHHHhhcCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 123 RTLFNDMPR-RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
..++=.-+. -+...|..++..+.. .+...-.++.. . .+++...-...+++- .. +..+.
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~---~-----Wp~~Lys~l~iisa~--~~----------q~~q~ 501 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIK---E-----WPGHLYSVLTIISAT--EP----------QIKQN 501 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHH---h-----CChhhhhhhHHHhhc--ch----------HHHhh
Confidence 322211111 144566666666665 22222222211 1 222222111111110 00 11110
Q ss_pred CCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCCh
Q 010961 202 GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDD 238 (496)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (496)
-. +...-..|+..|...+++..|+.++-...+++.
T Consensus 502 -Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SE-STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -cc-chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 01 222233488888888999999998888887554
No 236
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.71 E-value=0.067 Score=35.85 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
.|.+.+++++|++.++.+.. ..| +...+.....++...|+++.|.+.++...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE-----LDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH-----hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45555555555555555555 222 23334444455555555555555555555443
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.69 E-value=2.1 Score=41.07 Aligned_cols=83 Identities=11% Similarity=-0.060 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCHHHHHHHH-HHHHccchHHHHHHHHHHHHHcC---CCcchhHHHHHHHHHHhcCCh
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDAFILATVI-GACADLAALEYGKQIHSHILVNG---LDFDSVLGSSLVNLYGKCGDF 223 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 223 (496)
...+.|.++++.+.+ .-|+...|...- +.+...|+++.|.+.++...... .+.....+-.++-.+.-.++|
T Consensus 247 ~~~~~a~~lL~~~~~-----~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK-----RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred CCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 345555555555555 334444433332 44445556666666655433211 111222334455555556666
Q ss_pred hhHHHHHHhcCC
Q 010961 224 NSANQVLNMMKE 235 (496)
Q Consensus 224 ~~a~~~~~~~~~ 235 (496)
++|...|..+.+
T Consensus 322 ~~A~~~f~~L~~ 333 (468)
T PF10300_consen 322 EEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=95.67 E-value=0.31 Score=38.19 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=37.6
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
.|++++|..+|.-+. ..++.-+..|..++-..++++.|...|.... ..|+..+-....+|...|+.+.|...|+
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 344444444444333 2233333444444444444444444444321 2344444445566666666666666666
Q ss_pred HHHh
Q 010961 426 NMNK 429 (496)
Q Consensus 426 ~m~~ 429 (496)
...+
T Consensus 130 ~a~~ 133 (165)
T PRK15331 130 LVNE 133 (165)
T ss_pred HHHh
Confidence 6655
No 239
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.62 E-value=2.2 Score=40.76 Aligned_cols=92 Identities=14% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcccC---chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLS 412 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 412 (496)
..+|...+..-...|+.+.+.-+|++...| -...|--.+.-....|+.+-|..++....+ |+......+-..+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 344555555555556666665555555422 122333333333333555555555544432 22111111111111
Q ss_pred -hCCChhhHHHHHHHHHhC
Q 010961 413 -QNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 413 -~~g~~~~a~~~~~~m~~~ 430 (496)
..|++..|..+++...+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 245666666666665554
No 240
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.59 E-value=1.4 Score=45.52 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=78.3
Q ss_pred CChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH----HccchHHHHH
Q 010961 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC----ADLAALEYGK 192 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~ 192 (496)
++++.|+.-+..+. ...|.-.++.--+.|.+.+|+.++ +|+...+.....+| ...+.++.|-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly-----------~~~~e~~k~i~~~ya~hL~~~~~~~~Aa 959 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY-----------KPDSEKQKVIYEAYADHLREELMSDEAA 959 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee-----------ccCHHHHHHHHHHHHHHHHHhccccHHH
Confidence 46666666665554 334455555555666677766653 45655555554444 3445555555
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHH---HHHHHHHHhcCChhHHHHHHHhcCCCCc
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL---SALISGYANCGKMNDARRVFDRTTDTSS 269 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (496)
-.|+..-+ ..-.+.+|..+|+|.+|+.+..++..+-.... ..|+.-+...++.-+|-++..+......
T Consensus 960 l~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 960 LMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 54443321 12345566666777777777666665333332 4555566666666666666555443322
Q ss_pred chHHHHHHHHHhCCCHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLF 292 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~ 292 (496)
... ..+++...+++|+++-
T Consensus 1031 ~av----~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1031 EAV----ALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHH----HHHhhHhHHHHHHHHH
Confidence 222 2333344455555444
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.45 E-value=0.23 Score=37.48 Aligned_cols=99 Identities=7% Similarity=0.013 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
..++..++-++++.|+++....+++..-..|+..- ...+. .. ...+..|+..+..+++.++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~-------~~~~~----------~~--~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK-------KKEGD----------YP--PSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc-------cccCc----------cC--CCCCCCCCHHHHHHHHHHH
Confidence 44566666666666666666666655432111000 00000 11 1145667777777777777
Q ss_pred HccchHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHHhc
Q 010961 183 ADLAALEYGKQIHSHILV-NGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 220 (496)
+..+++..|.++.+...+ .+++.+..++..|+......
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 777777777777777654 45666677777777665543
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.30 E-value=0.16 Score=46.80 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=63.0
Q ss_pred cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010961 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLA 440 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 440 (496)
+.+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|+..+++..+.+ .| .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 34566788888888888888888888888664 543 347888888888888888888888888752 22 122
Q ss_pred HHHH--HHhccCchhhHHHHHHHHHHcCC
Q 010961 441 SVIS--ACANISSLELGEQVFARVTIIGL 467 (496)
Q Consensus 441 ~l~~--~~~~~g~~~~a~~~~~~~~~~~~ 467 (496)
.+.. .+....+.+...++++...+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 01122333456666666666554
No 243
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.29 E-value=1.1 Score=35.44 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH
Q 010961 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 289 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
+++++.+.+.+++|+...+..++..+.+.|.+....+ +...++-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk 61 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSK 61 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcH
Confidence 3455556667777777777777777777776554333 33444444443
No 244
>PRK09687 putative lyase; Provisional
Probab=95.25 E-value=2 Score=37.94 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcC-ChhHHHHHH-HhcCCCCcchHHHHHHHHHhCC
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCG-KMNDARRVF-DRTTDTSSVMWNSMISGYISNN 283 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~ 283 (496)
+..+-...+.++.+.++.+....+...+.+++...-...+.++.+.+ ....+...+ ..+..++...-...+.++.+.|
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 33444445555555555433333333344444444333344443332 112222222 2223344444444455555555
Q ss_pred CHHHHHHHHHHHH
Q 010961 284 EDTEALLLFHKMR 296 (496)
Q Consensus 284 ~~~~a~~~~~~m~ 296 (496)
+ ..++..+-...
T Consensus 221 ~-~~av~~Li~~L 232 (280)
T PRK09687 221 D-KRVLSVLIKEL 232 (280)
T ss_pred C-hhHHHHHHHHH
Confidence 4 23333333333
No 245
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.24 E-value=3 Score=39.93 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=102.1
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVL--EDASTLASVL 311 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l~ 311 (496)
+..+|...+.-....|+.+.+.-+|++...|- ...|--.+.-....|+.+-|-.++..-.+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45678888888888888888888888876653 234444444445558887777777665554322 2222222222
Q ss_pred HHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHH---HHHHhcc--cCchhhHHHHHHHHH-----
Q 010961 312 SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDAC---KLFSELK--VYDTILLNTMITVYS----- 381 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~--~~~~~~~~~l~~~~~----- 381 (496)
+-..|+...|..+++.+.+.- +.-..+-..-+....+.|+.+.+. +++.... ..+..+...+.--+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 345678888888888887753 222222233344455667777666 3333333 223333333332222
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 010961 382 SCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNG 415 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 415 (496)
-.++.+.|..++.++.+ ++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 24667777777777765 34556666666665544
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.16 E-value=0.57 Score=44.85 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=118.9
Q ss_pred hhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-CCh---------hhHHHHHHHHHh----cCCHHH
Q 010961 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNC---------FSWNAMIEGFMK----LGHKEK 90 (496)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~ 90 (496)
.-+|.-++..= |+ .+..++...+-.|+-+.+++++....+ ++. ..|+..+..++. ..+.+.
T Consensus 177 ~G~f~L~lSlL--Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSLL--PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHhC--CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 66677777653 22 446899999999999999999987665 222 235555555443 457889
Q ss_pred HHHHHhhCCC--CChhhHHHHH-HHHHhcCChhHHHHHHhhcCCC-------CcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 010961 91 SLQLFNVMPQ--KNDFSWNMLI-SGFAKAGELKTARTLFNDMPRR-------NAIAWNSMIHCYVRNGFAREAVRLFKEL 160 (496)
Q Consensus 91 a~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 160 (496)
|.++++.+.+ |+...|...- +.+...|++++|++.|+..... ....+--+.-++.-.++|++|.+.|..+
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 9999999987 8876665443 5567789999999999976531 2334556667788899999999999999
Q ss_pred HHchhccCCcCHHHHHHHHHHH-HccchH-------HHHHHHHHHHHH
Q 010961 161 NSDLVERLQCDAFILATVIGAC-ADLAAL-------EYGKQIHSHILV 200 (496)
Q Consensus 161 ~~~~~~~~~p~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~~ 200 (496)
.+. ..-+..+|.-+..+| ...++. ++|.+++.+...
T Consensus 332 ~~~----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKE----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhc----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 984 233445555555443 345555 889888888754
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.10 E-value=0.3 Score=45.05 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=37.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 102 NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNA----IAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+...++.+..+|...|++++|+..|++..+ |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666666666666666543 332 2366666666666666666666666655
No 248
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.00 E-value=0.077 Score=41.42 Aligned_cols=131 Identities=10% Similarity=0.187 Sum_probs=88.7
Q ss_pred HHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCC
Q 010961 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 8 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (496)
...+++.+...+.++....+++.+.+.+...+.. ..+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~-~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKENKENNPD-LHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGL 85 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH-HHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcch
Confidence 4456778888999999999999999877555555 899999999999988999988883332 444567777778888
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCC
Q 010961 88 KEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 149 (496)
++.|.-++.++...+.. +..+...++++.|.+.+.... +...|..+++.+...++
T Consensus 86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~~--~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKVD--DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGCS--SSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhcC--cHHHHHHHHHHHHhcCc
Confidence 88877777766542211 111233455555554444443 46678888877766554
No 249
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=0.52 Score=37.01 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=65.0
Q ss_pred HHhcCChhHHHHHHhhcCCCCcccHHHHH-----HHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHH-----HHH
Q 010961 113 FAKAGELKTARTLFNDMPRRNAIAWNSMI-----HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI-----GAC 182 (496)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll-----~~~ 182 (496)
+++.+..++|+.-|..+.+.+...|-.|. ......|+...|+..|.+.-.. .|.+.....+. -.+
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-----t~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-----TSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-----CCCcchhhHHHHHHHHHHH
Confidence 34566777777777777766555555443 2345667777777777777652 22222222221 123
Q ss_pred HccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 183 ADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 183 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
...|.++....-.+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34556665555555554444433334445555555566666666666666553
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=2.2 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=8.1
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFK 158 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~ 158 (496)
-...|...|.++.|-..++
T Consensus 97 As~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHHhCCcchHHHHHH
Confidence 3344444444444443333
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.75 E-value=0.33 Score=42.90 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=59.3
Q ss_pred HHHHHHccchHHHHHHHHHHHHHcC-----CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-------CChHH-HH--
Q 010961 178 VIGACADLAALEYGKQIHSHILVNG-----LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-------PDDFC-LS-- 242 (496)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~-~~-- 242 (496)
+..++...+.++++.+.|+...+.. .-....++..|...|.+..|+++|.-+..+..+ .|... |.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444555555555555555544321 112234566666666666666666554443321 12111 11
Q ss_pred ---HHHHHHHhcCChhHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 243 ---ALISGYANCGKMNDARRVFDRTTD-----TS----SVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 243 ---~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
.+.-++...|....|.+..++..+ .| ......+...|...|+.+.|+.-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222334455666666665554433 12 223444556677777777777666553
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.35 Score=43.53 Aligned_cols=98 Identities=14% Similarity=-0.013 Sum_probs=59.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--------C----------ChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ--------K----------NDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWN 138 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~--------~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 138 (496)
..+.+.|++..|..-|++... + -..+++.+..++.+.+++..|++..+.... +|+-+.-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 356677777777777666432 0 123456666667777777777776666553 3555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGAC 182 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~ 182 (496)
.-..++...|+++.|...|+++.+ +.|+......=+..|
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k-----~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK-----LEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH-----hCCCcHHHHHHHHHH
Confidence 556667777777777777777766 566555444433333
No 253
>PRK09687 putative lyase; Provisional
Probab=94.61 E-value=3 Score=36.82 Aligned_cols=134 Identities=17% Similarity=0.054 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhc-ccCchhhHHHHHHHHHhcC-CHHHHHH-HHhhCCCCChhhHHHHHHHHHhC
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSEL-KVYDTILLNTMITVYSSCG-RIEDAKH-IFRTMPNKSLISWNSMIVGLSQN 414 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~ 414 (496)
+..+-...+.++.+.++.+ +...+-.+ ..++...-...+.++.+.+ +...+.. +...+..++..+-...+.++.+.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 141 STNVRFAVAFALSVINDEA-AIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CHHHHHHHHHHHhccCCHH-HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 4445555566666666543 33333333 3455555555555555543 1223333 33344456777777777888887
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
|+. .|+..+-+..+.+ + .....+.++...|+. +|...+..+.+. .||..+-..-++++
T Consensus 220 ~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 KDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 774 5666666655543 2 234567777777775 567677766553 24665555555544
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=3 Score=36.26 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=69.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC-cccHH---HHHHHHHHcCCHHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN-AIAWN---SMIHCYVRNGFARE 152 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~li~~~~~~~~~~~ 152 (496)
......|++.+|..+|....+ .+...-..++.+|...|+++.|..++..++... ...+. .-|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345566777777777766654 334455666677777777777777777776421 11111 22334444444444
Q ss_pred HHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC-CcchhHHHHHHHHHHhcC
Q 010961 153 AVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGL-DFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 153 a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 221 (496)
..++-.+.-. .+-|...-..+...+...|+.+.|.+.+-.+.+... .-|...-..|+..+..-|
T Consensus 222 ~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444344333 112444444555555556666665554444433221 113334444554444444
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.42 E-value=2.8 Score=35.66 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+-.-+..-.+.|++++|.+.|+.+... ....| ...+...++.++.+.++++.|....++....-+.....-|...|.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 333444556778888888888888764 22222 344555666677777888888887777776554433334444444
Q ss_pred HHHhc-------CChhhHHHHHHhcCC-----CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchH-HHHHHHHHhC
Q 010961 216 LYGKC-------GDFNSANQVLNMMKE-----PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMW-NSMISGYISN 282 (496)
Q Consensus 216 ~~~~~-------~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~ 282 (496)
+.+.- .|...+..-+..+.+ ||.. =...|..-...+... ..-+ -.+.+-|.+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~d~-LA~~Em~IaryY~kr 180 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLNDA-LAGHEMAIARYYLKR 180 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 44421 222222332222221 2210 000000000000000 0011 1234567778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 283 NEDTEALLLFHKMRRNGVLEDA---STLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 283 ~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
|.+-.|..-++.|.+. .+-+. ..+-.+..+|...|-.++|...-.-+
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 8888888888888776 22222 23444455666666666666554433
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=1.7 Score=38.27 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (496)
+..+|-+++|++.-++.. +.|...-.+....+-..|++.++.++..+-
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 334455555555444443 223333344444444455555555544443
No 257
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.32 E-value=2.1 Score=33.96 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=26.2
Q ss_pred HHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHH
Q 010961 155 RLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 155 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 210 (496)
++++.+.+ .++.|+...+..++..+.+.|.+.. +.++++.++-+|+...
T Consensus 15 EYirSl~~---~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~l 63 (167)
T PF07035_consen 15 EYIRSLNQ---HNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPL 63 (167)
T ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHH
Confidence 34444444 4566666667777777766666543 3333444444444433
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.21 E-value=2 Score=33.22 Aligned_cols=20 Identities=0% Similarity=0.228 Sum_probs=8.0
Q ss_pred HHHHHHhcCChHHHHHHhhh
Q 010961 47 LLQMYMRCGNPTDALLLFDE 66 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~ 66 (496)
++..+...+.+......++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~ 32 (140)
T smart00299 13 VVELFEKRNLLEELIPYLES 32 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHH
Confidence 33333333444444444433
No 259
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.54 Score=42.41 Aligned_cols=86 Identities=15% Similarity=-0.011 Sum_probs=54.0
Q ss_pred HHHHHHhcCChhhHHHHHHhcc------------------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhh
Q 010961 345 LLDTYSKRGMPSDACKLFSELK------------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLIS 403 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 403 (496)
-...|.+.|++..|...|++.. ..-..++..+..++.+.+++..|+..-+.... +|+-.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3456788888888888877654 01122455566666666666666666665543 45555
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
.-.-..+|...|+++.|...|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555566666667777777777766664
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=3.7 Score=35.67 Aligned_cols=139 Identities=10% Similarity=0.066 Sum_probs=67.9
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC-chh---hHHHHHHHHHhcCCHHHHH
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY-DTI---LLNTMITVYSSCGRIEDAK 390 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~a~ 390 (496)
...|++..|...|+....... -+...--.+..+|...|+.+.|..++..+... ... ....-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 345555555555555554421 12333445556666666666666666665511 111 1111223333333333333
Q ss_pred HHHhhCC-CC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCchhh
Q 010961 391 HIFRTMP-NK-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL-RMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 391 ~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
.+-.+.- .| |...-..+...+...|+.+.|++.+-.+..+.. --|...-..++..+...|..+.
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 3333332 24 444555566777777777777776666554321 2244455566666655553333
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.00 E-value=2.7 Score=33.99 Aligned_cols=86 Identities=13% Similarity=-0.034 Sum_probs=54.0
Q ss_pred HHHHHhcCChhhHHHHHHhcc-cCchhhH-----HHHHHHHHhcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhCCCh
Q 010961 346 LDTYSKRGMPSDACKLFSELK-VYDTILL-----NTMITVYSSCGRIEDAKHIFRTMPNKSLIS--WNSMIVGLSQNGSP 417 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 417 (496)
...+..+|++++|...++... .+....+ -.|.......|.+|+|++.++....++... ...-.+.+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 455667777777777777555 2222222 234455666777777777777777664433 44455667777777
Q ss_pred hhHHHHHHHHHhCC
Q 010961 418 IEALDLFCNMNKLD 431 (496)
Q Consensus 418 ~~a~~~~~~m~~~~ 431 (496)
++|..-|++....+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777776654
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.93 E-value=0.88 Score=33.87 Aligned_cols=89 Identities=18% Similarity=0.064 Sum_probs=51.2
Q ss_pred HHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc--CHHHHHHHHHHHHccc
Q 010961 112 GFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC--DAFILATVIGACADLA 186 (496)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~ 186 (496)
+++..|+++.|++.|.+... ....+||.-..++--.|+.++|++-+++..+. .|-+. -...|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL--ag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL--AGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHhC
Confidence 34556677777776666542 35666777777777777777777777666654 22221 1122222233445566
Q ss_pred hHHHHHHHHHHHHHcC
Q 010961 187 ALEYGKQIHSHILVNG 202 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~ 202 (496)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666666655
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.73 E-value=1.9 Score=33.79 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=11.0
Q ss_pred HHHhCCChhhHHHHHHHHHhC
Q 010961 410 GLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~ 430 (496)
.+...|++.+|..+|+.+.+.
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 344555555555555555443
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.71 E-value=0.19 Score=29.56 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+..+...|...|++++|.+++++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.66 E-value=1.5 Score=38.99 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=93.2
Q ss_pred HhcCChhHHHHHHHhcCCC------CcchHHHHHHHHHhCCCHHHHHHHHH-HHHHC-CCCCC---HHHHHHHHHHHhcc
Q 010961 249 ANCGKMNDARRVFDRTTDT------SSVMWNSMISGYISNNEDTEALLLFH-KMRRN-GVLED---ASTLASVLSACSSL 317 (496)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~-g~~~~---~~~~~~l~~~~~~~ 317 (496)
....+.++|+..+.+.... -..+|..+..+.++.|.+++++..-- .|.-. ....+ ...|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666554431 12345555566666666666554321 11100 00111 12233333333333
Q ss_pred cchhhHHHHHHHHHHc-CCCc---hHHHHHHHHHHHHhcCChhhHHHHHHhcc-----cC----chhhHHHHHHHHHhcC
Q 010961 318 GFLEHGKQVHGHACKV-GVID---DVIVASALLDTYSKRGMPSDACKLFSELK-----VY----DTILLNTMITVYSSCG 384 (496)
Q Consensus 318 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~----~~~~~~~l~~~~~~~~ 384 (496)
-++.+++.+-..-... |..| ......++..++...+.++++++.|+... .. ...++..|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3444444333332221 1111 11222334455555556666666665544 11 1234555666666666
Q ss_pred CHHHHHHHHhhCCC-------CChh------hHHHHHHHHHhCCChhhHHHHHHHHHh----CCCCCC-HHHHHHHHHHH
Q 010961 385 RIEDAKHIFRTMPN-------KSLI------SWNSMIVGLSQNGSPIEALDLFCNMNK----LDLRMD-KFSLASVISAC 446 (496)
Q Consensus 385 ~~~~a~~~~~~~~~-------~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~ 446 (496)
++++|.-+..+..+ .|.. +.-.|.-++-..|....|.+.-++..+ .|-+|. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66655444433221 2221 112233444455555555555554332 332221 22344455555
Q ss_pred hccCchhhHHHHHHHH
Q 010961 447 ANISSLELGEQVFARV 462 (496)
Q Consensus 447 ~~~g~~~~a~~~~~~~ 462 (496)
...|+.+.|+.-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 5566666655555554
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.65 E-value=0.6 Score=39.85 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC--C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHHH
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR--R----NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILAT 177 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ 177 (496)
.|+.-+..+ +.|++..|...|....+ | ...++-.|..++...|++++|...|..+.+. .+-.|- +..+..
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHH
Confidence 355555543 45667777777776654 2 2345667777777778888777777777764 222232 255666
Q ss_pred HHHHHHccchHHHHHHHHHHHHHc
Q 010961 178 VIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
+..+..+.|+.+.|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666666777777777777776664
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.62 E-value=0.8 Score=37.12 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK--FSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
.+..+...|++.|+.+.|++.+.++.+....|.. ..+-.+|+...-.|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556666666667777777766666665444432 245556666666666666666666544
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.54 E-value=0.95 Score=39.30 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHh-----CCCCCCHHHHHH
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNK-----LDLRMDKFSLAS 441 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 441 (496)
++..++..+...|+++.+...+++... -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344455555555555555555555443 1334555555555555555555555555433 344444444333
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.50 E-value=5.1 Score=35.45 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCChhh---HHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHH
Q 010961 340 IVASALLDTYSKRGMPSD---ACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVG 410 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~---a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~ 410 (496)
.++..++.+|...+..+. |..+++.+. +..+..+..-+..+.+.++.+.+.+.+.+|... ....+...+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 455667777777665543 444444443 223455556666666678888888888887652 23445555544
Q ss_pred HH--hCCChhhHHHHHHHHHhCCCCCCHH-HHH----HHHHHHhccCc------hhhHHHHHHHHHH-cCCCchHHHHHH
Q 010961 411 LS--QNGSPIEALDLFCNMNKLDLRMDKF-SLA----SVISACANISS------LELGEQVFARVTI-IGLDSDQIISTS 476 (496)
Q Consensus 411 ~~--~~g~~~~a~~~~~~m~~~~~~p~~~-~~~----~l~~~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~~~ 476 (496)
+. .......|...+..+....+.|... ... ..+....+.++ .+....+++...+ .+.+.+..+-.+
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 42 1233456667776666555555543 111 11112222222 3344444553332 333444444443
Q ss_pred HHHH-------HHhcCChHHHHHhhh
Q 010961 477 LVDF-------YCKCGFIKMDEYYLM 495 (496)
Q Consensus 477 l~~~-------~~~~g~~~~A~~~~~ 495 (496)
+.-. ..+.+++++|.+.++
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3333 457788898887764
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.50 E-value=3 Score=37.05 Aligned_cols=122 Identities=8% Similarity=0.159 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHHHh--cC----ChhhHHHHHHhcc-------cCchhhHHHHHHHHHhcCCH--
Q 010961 322 HGKQVHGHACKVGVIDDVIVASALLDTYSK--RG----MPSDACKLFSELK-------VYDTILLNTMITVYSSCGRI-- 386 (496)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~-- 386 (496)
+...+++.+.+.|+.-+..+|-+....... .. ...+|.++|+.|+ .++...+..++.. ..++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555554444332222222 11 2356778888887 2334444444433 22222
Q ss_pred --HHHHHHHhhCCC-----C-ChhhHHHHHHHHHhCCC--hhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 387 --EDAKHIFRTMPN-----K-SLISWNSMIVGLSQNGS--PIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 387 --~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+.++.+|+.+.+ . +......++...-.... ...+.++++.+++.|+++....|..+.-.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 344555555443 1 22333333332222222 34677778888888877776666655443
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.46 E-value=1.9 Score=34.03 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=29.7
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..+|.++....-.+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34566666655555555444333334445555555666777777776665544
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.38 E-value=0.35 Score=28.44 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.++..+..+|...|++++|.++++++.+.... |+..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 35667778888888888888888888775432 445554443
No 273
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.18 E-value=0.35 Score=37.67 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=51.2
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 389 (496)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|-++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHHH
Confidence 44555666677777777777776655566677777777777777667777666632 223334555555666666666
Q ss_pred HHHHhhCC
Q 010961 390 KHIFRTMP 397 (496)
Q Consensus 390 ~~~~~~~~ 397 (496)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 55555544
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.16 E-value=4.9 Score=34.24 Aligned_cols=172 Identities=12% Similarity=0.017 Sum_probs=90.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc--
Q 010961 277 SGYISNNEDTEALLLFHKMRRNG--VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR-- 352 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 352 (496)
..-.+.|++++|.+.|+.+...- -+-...+...++-++.+.++++.|....++..+.-......-|...|.+++..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 34456677777777777776541 12234455556666667777777777777766643332222344444444321
Q ss_pred -----CChhhHHHHHHhcc-----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh-H-HHHHHHHHhCCChhhH
Q 010961 353 -----GMPSDACKLFSELK-----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLIS-W-NSMIVGLSQNGSPIEA 420 (496)
Q Consensus 353 -----~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~l~~~~~~~g~~~~a 420 (496)
.+...+..-+..+. -||+. =...|..-+..+ .|... + -.+.+.|.+.|.+..|
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~--~d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKL--NDALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHH--HHHHHHHHHHHHHHHHHhcChHHH
Confidence 12222222222221 11110 000010000000 01111 1 1345778889999999
Q ss_pred HHHHHHHHhCCCCCCHH---HHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 421 LDLFCNMNKLDLRMDKF---SLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..-+++|.+. .+-+.. .+-.+..+|...|-.++|...-+-+..
T Consensus 187 ~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999886 443433 455566778888888888877665544
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.12 E-value=3.7 Score=38.48 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 138 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
..+..+.-+.|+.++|++.|.+|.+. .+..-+......|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke--~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKE--FPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhh--CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555555666666676666666552 1111122344555566666666666666655543
No 276
>PRK11906 transcriptional regulator; Provisional
Probab=93.12 E-value=3 Score=38.89 Aligned_cols=138 Identities=9% Similarity=0.015 Sum_probs=74.0
Q ss_pred chhhHHHHHHHHHH-cCCCch-HHHHHHHHHHHHhc---------CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC
Q 010961 319 FLEHGKQVHGHACK-VGVIDD-VIVASALLDTYSKR---------GMPSDACKLFSELK---VYDTILLNTMITVYSSCG 384 (496)
Q Consensus 319 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 384 (496)
..+.|..+|.+... +...|+ ...|..+..++... ....+|.+.-+... +.|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45677777877772 223333 33344443333221 12233444444444 455666666666666677
Q ss_pred CHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCchhhHHHH
Q 010961 385 RIEDAKHIFRTMPN--KSL-ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK---FSLASVISACANISSLELGEQV 458 (496)
Q Consensus 385 ~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
+++.|..+|++... ||. .+|........-.|+.++|.+.+++..+. .|.. ......++.|+..+ .+.+.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77777777777654 432 45555555566677777777777776554 4432 23333344454443 3444444
Q ss_pred H
Q 010961 459 F 459 (496)
Q Consensus 459 ~ 459 (496)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.92 E-value=6.3 Score=34.87 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=13.0
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 010961 145 VRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~ 163 (496)
.+.|+.+.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4567777777777777663
No 278
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.75 E-value=1.2 Score=38.03 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=41.0
Q ss_pred hcCChhHHHHHHHhcCC--CC----cchHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhcccchh
Q 010961 250 NCGKMNDARRVFDRTTD--TS----SVMWNSMISGYISNNEDTEALLLFHKMRRNG-VLE-DASTLASVLSACSSLGFLE 321 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~l~~~~~~~~~~~ 321 (496)
+.|++..|...|....+ |+ +.++--|..++...|++++|..+|..+.+.- -.| -+..+-.|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34445555555554443 21 2233345556666666666666665555431 111 1234444444555555555
Q ss_pred hHHHHHHHHHHc
Q 010961 322 HGKQVHGHACKV 333 (496)
Q Consensus 322 ~a~~~~~~~~~~ 333 (496)
.|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.63 E-value=5.6 Score=33.59 Aligned_cols=212 Identities=15% Similarity=0.109 Sum_probs=125.4
Q ss_pred cCChhHHHHHHHhcCCCC-----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcccchhhHH
Q 010961 251 CGKMNDARRVFDRTTDTS-----SVMWNSMISGYISNNEDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGK 324 (496)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~ 324 (496)
.+....+...+....... ...+......+...+.+..+...+...... ........+..........+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555444322 356666777777888888888877777652 23444555556666666777777788
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH-HHHhcCChhhHHHHHHhcccCch------hhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 325 QVHGHACKVGVIDDVIVASALLD-TYSKRGMPSDACKLFSELKVYDT------ILLNTMITVYSSCGRIEDAKHIFRTMP 397 (496)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (496)
..+.........+. ........ .+...|+++.|...+.+....++ ..+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 87777776543331 11222222 67777888888887777643221 122223333455677777777777665
Q ss_pred C--C--ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 398 N--K--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-KFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 398 ~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
. + ....+..+...+...++...+...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 2 2445666667777777777777777777664 333 334444444444555667777766666553
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.61 E-value=0.32 Score=27.07 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677778888888888888887744
No 281
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.60 E-value=12 Score=37.48 Aligned_cols=162 Identities=10% Similarity=0.017 Sum_probs=81.0
Q ss_pred hhhHHHHHHHHH-hcCCHHHHHHHHhhCCC----CCh-----hhHHHHHHHHHhcCChhHHHHHHhhcCCC----Cccc-
Q 010961 72 CFSWNAMIEGFM-KLGHKEKSLQLFNVMPQ----KND-----FSWNMLISGFAKAGELKTARTLFNDMPRR----NAIA- 136 (496)
Q Consensus 72 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 136 (496)
..++-.+...+. ...+++.|...+++... ++. .....++..+.+.+... |...+++..+. ....
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555566555 56777777777776643 111 11233445555554444 66666664421 1112
Q ss_pred ---HHHH-HHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCC-------
Q 010961 137 ---WNSM-IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA--DLAALEYGKQIHSHILVNGL------- 203 (496)
Q Consensus 137 ---~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~------- 203 (496)
+..+ +..+...+++..|++.++.+.........|-...+..++.+.. +.+..+.+.+.++.+.....
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2222 2222233677778887777766422224444455555555443 34445555555555533221
Q ss_pred --CcchhHHHHHHHHHH--hcCChhhHHHHHHhcC
Q 010961 204 --DFDSVLGSSLVNLYG--KCGDFNSANQVLNMMK 234 (496)
Q Consensus 204 --~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 234 (496)
.|...++..+++.++ ..|+++.+...++++.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 224445555555443 3566556655555443
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.49 E-value=1.4 Score=32.84 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCch
Q 010961 379 VYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF---SLASVISACANISSL 452 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~ 452 (496)
++...|+++.|++.|.+... .+...||.-..++.-+|+.++|++-+.+..+..-.-+.. .|..=...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34445555555555555442 345566666666666666666666666665532111211 222222234455666
Q ss_pred hhHHHHHHHHHHcC
Q 010961 453 ELGEQVFARVTIIG 466 (496)
Q Consensus 453 ~~a~~~~~~~~~~~ 466 (496)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666655555
No 283
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=5.2 Score=35.41 Aligned_cols=144 Identities=17% Similarity=0.113 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc---CCCcchhHHHHHHHHHHhcCCh
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN---GLDFDSVLGSSLVNLYGKCGDF 223 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 223 (496)
.|+..+|-..++++.++ .+.|...+...=.+|...|+.+.....++++... +++..+.+-..+.-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d----~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD----YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHh----CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 45555555555555552 4444445555555555556555555555555432 1111111222222333445666
Q ss_pred hhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCC--C-----cchHHHHHHHHHhCCCHHHHHHHHH
Q 010961 224 NSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDT--S-----SVMWNSMISGYISNNEDTEALLLFH 293 (496)
Q Consensus 224 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 293 (496)
++|++.-++..+ -|.....+....+-..|+..++.++..+-... . ...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 666666665554 23334445555555666666666665543331 0 1122223334455577777777775
Q ss_pred H
Q 010961 294 K 294 (496)
Q Consensus 294 ~ 294 (496)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.17 E-value=0.29 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=20.8
Q ss_pred hHHHHHhccCCCchHHHHHHHHHHHhcCChHHHH
Q 010961 28 HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDAL 61 (496)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 61 (496)
|+..++.. |+...+|+.+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444 555557777777777777777765
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.14 E-value=0.27 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=19.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChHHHH
Q 010961 460 ARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (496)
++.++..+ -++..|+.|..+|...|++++|+
T Consensus 3 ~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444432 25677777777777777777775
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.94 E-value=4.9 Score=31.57 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=25.1
Q ss_pred hcCChhHHHHHHhhcC--CCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 115 KAGELKTARTLFNDMP--RRNAIAW-NSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 115 ~~~~~~~a~~~~~~~~--~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+.++.+++..++..+. .|..... ..-...++..|+|.+|+.+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4456666666665553 2332221 2222345566666666666666655
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.85 E-value=0.4 Score=26.68 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHH
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666553
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=3.3 Score=39.65 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=46.6
Q ss_pred hcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHH
Q 010961 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQI 194 (496)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 194 (496)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD------------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc------------hhhhhhhhhhcCChhHHHHH
Confidence 4455555555443332 334555566666666666666655554433 33444444444554444444
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 195 HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (496)
-....+.|.. |...-+|...|+++++.+++..
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4444444322 2222334444555555555443
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.67 E-value=6.8 Score=32.41 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCC
Q 010961 209 LGSSLVNLYGKCGDFNSANQVLNMMKEP 236 (496)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (496)
||--|...+...|+.++|..+|+.....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4555566666666666666666555443
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=2.7 Score=36.69 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=42.5
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 415 GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
-++++++.++..=..-|+-||.++++.+++.+.+.+++..|.++.-.|+...
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3567888888888888888999999999999999999888888888776543
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=16 Score=36.43 Aligned_cols=171 Identities=13% Similarity=0.090 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHH
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMPQ--K---NDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAR 151 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 151 (496)
--+..+.+.+.+++|++..+.... + -.......+..+.-.|++++|-...-.|...+...|...+..+...++..
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 456778899999999999887765 2 23467778888889999999999999999888888888888888877766
Q ss_pred HHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHH
Q 010961 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
....++ .. .....+...|..++..+.. .+...-.++. .+ . +...|..+.-.-.. ..-++
T Consensus 441 ~Ia~~l---Pt---~~~rL~p~vYemvLve~L~-~~~~~F~e~i---~~--W--p~~Lys~l~iisa~-------~~q~~ 499 (846)
T KOG2066|consen 441 DIAPYL---PT---GPPRLKPLVYEMVLVEFLA-SDVKGFLELI---KE--W--PGHLYSVLTIISAT-------EPQIK 499 (846)
T ss_pred hhhccC---CC---CCcccCchHHHHHHHHHHH-HHHHHHHHHH---Hh--C--ChhhhhhhHHHhhc-------chHHH
Confidence 544432 22 1122355677777777665 2222222221 11 1 12222222111110 11111
Q ss_pred hcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCc
Q 010961 232 MMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSS 269 (496)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (496)
+-.++ ...-..|+..|...+++..|..++-...+++.
T Consensus 500 q~Se~-~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 500 QNSES-TALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hhccc-hhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11111 12233488889999999999999988877553
No 292
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.26 E-value=32 Score=39.39 Aligned_cols=304 Identities=12% Similarity=0.046 Sum_probs=159.1
Q ss_pred HHHHHHHccchHHHHHHHHHHH----HHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHh-cCCCChHHHHHHHHHHHhc
Q 010961 177 TVIGACADLAALEYGKQIHSHI----LVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNM-MKEPDDFCLSALISGYANC 251 (496)
Q Consensus 177 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~ 251 (496)
.+..+-.+.+.+..|...++.- .+.. .....|..+...|...+++|.+.-+... ..+|+ ...-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 4445666778888888888773 2211 1233455566688888999888887773 44444 23345556778
Q ss_pred CChhHHHHHHHhcCCC--C-cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcccchhhHHHHH
Q 010961 252 GKMNDARRVFDRTTDT--S-SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLA-SVLSACSSLGFLEHGKQVH 327 (496)
Q Consensus 252 ~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~~~~~~a~~~~ 327 (496)
|++..|...|+++.+. + ..+++-++......|.++.++-..+-.... ..+....++ .-+.+-.+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 9999999999998873 3 557888888888888888887766655544 233333333 3344556777777777665
Q ss_pred HHHHHcCCC-chHHHHHHHHHHHHhcCChh--hHHHHHHhcc-------------cCchhhHHHHHHHHHhcCCHHHHHH
Q 010961 328 GHACKVGVI-DDVIVASALLDTYSKRGMPS--DACKLFSELK-------------VYDTILLNTMITVYSSCGRIEDAKH 391 (496)
Q Consensus 328 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (496)
. ..+.. ..... +.....+..+-+ .-.+..+.+. ..-...|..++....-.. .+...+
T Consensus 1542 ~---~~n~e~w~~~~---~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~ 1614 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVES---IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIE 1614 (2382)
T ss_pred h---cccccchhHHH---HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5 11111 11110 222222221111 1111221111 000123444444433222 112222
Q ss_pred HHhhCCCC-----ChhhHHHHHHHHHhCCChhhHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 392 IFRTMPNK-----SLISWNSMIVGLSQNGSPIEALDLFCN-MNKLDLRM-----DKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 392 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~-m~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
.+...... +..-|..-+..-....+..+-+--+++ +.....+| -..+|-...+.....|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22222211 111222111111111111111111111 22221122 24578888888888888888888777
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 461 RVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
...+.+ . +..+--..+.+...|+...|+.++++
T Consensus 1695 ~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~ 1727 (2382)
T KOG0890|consen 1695 NAKESR-L--PEIVLERAKLLWQTGDELNALSVLQE 1727 (2382)
T ss_pred hhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHH
Confidence 666655 2 23445566777888888888888764
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.21 E-value=0.47 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566777777888888888888877766
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.38 E-value=21 Score=35.81 Aligned_cols=87 Identities=10% Similarity=0.118 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHh-CCC-----------hhhHHHHHHHHHhCC-----CCC-C
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPNKSLI--SWNSMIVGLSQ-NGS-----------PIEALDLFCNMNKLD-----LRM-D 435 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~-~g~-----------~~~a~~~~~~m~~~~-----~~p-~ 435 (496)
...-+...|++++|..+|+-..+.+.+ ..|.++.-... ... ...|..+.+.....+ +.+ +
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 334455677778887777777664332 33333322222 222 222444444433321 112 2
Q ss_pred HHHHHHHHHH-----HhccCchhhHHHHHHHH
Q 010961 436 KFSLASVISA-----CANISSLELGEQVFARV 462 (496)
Q Consensus 436 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~~ 462 (496)
..|+..|+.. +...|+++.|.+.++.+
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3455555543 35677888777665543
No 295
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.21 E-value=0.53 Score=23.82 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHhhhC
Q 010961 473 ISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
....+..++...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 344567777788888888877764
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.08 E-value=3.4 Score=33.49 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
.+..+...|.+.|+.++|++.|.++... ...|. ...+..+++.+...+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555556666666666666666665541 22222 2334445555555555555555544443
No 297
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.59 E-value=8 Score=29.76 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHhcCChhHHHHHHHhcCC--C----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 248 YANCGKMNDARRVFDRTTD--T----SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
..+.|++++|.+.|+.+.. | ...+--.++.+|.+.+++++|...+++.++.....-..-|...+.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3344555555555544433 1 12344456667777777777777777776643222223344444443
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.90 E-value=17 Score=32.49 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh--cC----ChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 010961 188 LEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK--CG----DFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
++....+++.+.+.|+.-+..+|-+....... .. ...++..+++.|++.-+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f---------------------- 135 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF---------------------- 135 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc----------------------
Confidence 45667788888888888777666443332222 12 234566667766641100
Q ss_pred HhcCCCCcchHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcccc--hhhHHHHHHHHHHc
Q 010961 262 DRTTDTSSVMWNSMISGYISNNE----DTEALLLFHKMRRNGVLEDAS--TLASVLSACSSLGF--LEHGKQVHGHACKV 333 (496)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 333 (496)
+..++-.++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+.
T Consensus 136 --LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 136 --LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred --ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 001122333333322 2222 245666777777777665432 33333333322222 44777888888888
Q ss_pred CCCchHHHHHHHH
Q 010961 334 GVIDDVIVASALL 346 (496)
Q Consensus 334 ~~~~~~~~~~~l~ 346 (496)
|+++....|..+.
T Consensus 212 ~~kik~~~yp~lG 224 (297)
T PF13170_consen 212 GVKIKYMHYPTLG 224 (297)
T ss_pred CCccccccccHHH
Confidence 8887776665554
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.85 E-value=6.7 Score=32.14 Aligned_cols=74 Identities=16% Similarity=0.014 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc---CCCchHHHHHHHHHHHHhcCChHHHH
Q 010961 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII---GLDSDQIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (496)
-+.|.+.|-.+...+.--++.....|..-|. ..|.+++.+++-+..+. +-.+|+.++.+|+..|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4668888888888775556666666655554 57899999999877653 33678999999999999999999874
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.78 E-value=19 Score=33.08 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHhcCCC-------CcchHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDT-------SSVMWNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
....+|..+...+.+.|.++.|...+.++... .+...-.-....-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456667777777777777777777665542 234444455666677888888888877766
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=7 Score=37.61 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=58.8
Q ss_pred HHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHH
Q 010961 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
...+.|+.+.|.++..+ ..+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-...
T Consensus 646 lal~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhhhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHH
Confidence 34455666666665543 23455677777777777777777777766543 445555666666666555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 428 NKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 428 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
++.| +-|. ..-++...|+++++.+++..
T Consensus 719 ~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQG-KNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhc-ccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 5554 2222 22345556777777666543
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.73 E-value=0.96 Score=24.40 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.|..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777777665
No 303
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.50 E-value=23 Score=33.61 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPN--K---SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+..++.+.|+.++|.+.++++.+ | +......|+.++...+.+.++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44444455555555555555543 2 112344455555555666666555555443
No 304
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.43 E-value=9.8 Score=29.29 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=27.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGL 203 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 203 (496)
...+.|++++|.+.|+.+... .+..| ....-..++.++...++++.|...++..++..+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 334455555555555555543 11111 122333444555555555555555555555443
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.33 E-value=6.6 Score=34.28 Aligned_cols=75 Identities=8% Similarity=0.028 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHH-----cCCCchHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK-----VGVIDDVIVASAL 345 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 345 (496)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444444444555555555555544432 33444455555555555555555555444433 3555555444433
Q ss_pred H
Q 010961 346 L 346 (496)
Q Consensus 346 ~ 346 (496)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.29 E-value=4.7 Score=28.32 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
+.-++.+-++.+....+.|++......+++|.+.+++..|..+++-+..+. ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 445666677777777888999999999999999999999999988776432 113335555543
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.28 E-value=7.2 Score=27.62 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=52.5
Q ss_pred HHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHH
Q 010961 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
++.+.+...++.+++..+.+ +..+...|++++|..+.+...-||...|-.|- -.+.|-.+++..-
T Consensus 26 tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~r 90 (115)
T TIGR02508 26 TIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESR 90 (115)
T ss_pred HHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHH
Confidence 34444444444455555444 34567788888888888888778888876553 3466777777777
Q ss_pred HHHHHhCCCCCCHHHHH
Q 010961 424 FCNMNKLDLRMDKFSLA 440 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~ 440 (496)
+-+|...| .|....|.
T Consensus 91 l~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 91 LNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77787776 55444443
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.21 E-value=13 Score=30.35 Aligned_cols=83 Identities=10% Similarity=-0.006 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-CChhhH-----HHHHHHHHhcCChhHHHHHHhhcCCCCccc--HHHHHHHHHHcCCHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ-KNDFSW-----NMLISGFAKAGELKTARTLFNDMPRRNAIA--WNSMIHCYVRNGFAR 151 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 151 (496)
..+...|++++|..-+++... +.-..+ ..|.+.....|.+++|+..++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 334455556666555555442 211122 223334445555555555555555443221 223334555555555
Q ss_pred HHHHHHHHHHH
Q 010961 152 EAVRLFKELNS 162 (496)
Q Consensus 152 ~a~~~~~~~~~ 162 (496)
+|..-|+....
T Consensus 177 ~Ar~ay~kAl~ 187 (207)
T COG2976 177 EARAAYEKALE 187 (207)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.61 E-value=4.9 Score=28.27 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-HcCCCchHHHHHHHHH
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-IIGLDSDQIISTSLVD 479 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 479 (496)
++.+-+..+....+-|++....+.+++|.+.+|+..|.++++-+. +.|. +..+|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 456666677777789999999999999999999999999999776 3332 3445655554
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.91 E-value=29 Score=33.03 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 284 EDTEALLLFHKMRRN-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
+.+..+++..++... |...-...+..+-..|....++.+|.+++..+.++
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 344444444444432 33333444444445555555666666666555544
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.73 E-value=1.6 Score=23.63 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 345555555555555555555555554
No 312
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=47 Score=34.51 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCCCChhhH-----HHHHH---HHHhcCCHHHHHHHHhhCCC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPRRNCFSW-----NAMIE---GFMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~l~~---~~~~~~~~~~a~~~~~~~~~ 100 (496)
+..=+..+....++++|..+-+....|++... ..... -+..+|++++|.+.|+++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 34445666666778888887777766554322 11111 24466788888888888765
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.76 E-value=6.3 Score=28.06 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 287 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
+..+-++.+....+.|++......+++|.+.+++..|..+++-+..+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 556666777777788888888888888888888888888888776542 122225555553
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.41 E-value=1.9 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888777766
No 315
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.36 E-value=79 Score=36.60 Aligned_cols=156 Identities=10% Similarity=0.026 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CC--ChhhHHHHHHHHHhcCChhHHHHHHhh-cCCCCcccHHHHHHHHHHcCC
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMP----QK--NDFSWNMLISGFAKAGELKTARTLFND-MPRRNAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 149 (496)
.+..+-.+.+.+.+|...+++-. +. ...-|..+...|+..+++|....+... ...|+ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 45556667888999999998842 21 223455555688888998888877763 33332 3334555677899
Q ss_pred HHHHHHHHHHHHHchhccCCcC-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhH-HHHHHHHHHhcCChhhHH
Q 010961 150 AREAVRLFKELNSDLVERLQCD-AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVL-GSSLVNLYGKCGDFNSAN 227 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~ 227 (496)
|+.|...|+.+.+ ..|+ ..+++-++......|.++...-..+-....- .+.... ++.=+.+--+.+++|...
T Consensus 1465 ~~da~~Cye~~~q-----~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1465 WADAAACYERLIQ-----KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHHHHHHHHHhhc-----CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 9999999999987 4454 6677777777777777776666444433321 112222 222333445677777777
Q ss_pred HHHHhcCCCChHHHHHH
Q 010961 228 QVLNMMKEPDDFCLSAL 244 (496)
Q Consensus 228 ~~~~~~~~~~~~~~~~l 244 (496)
..+. +.+..+|...
T Consensus 1539 ~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1539 SYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhhh---cccccchhHH
Confidence 7665 4444444443
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.99 E-value=6.8 Score=27.91 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
+..+-+..+....+-|++....+.+++|.+.+|+..|.++++-+...-- +...+|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHHH
Confidence 4555566666677888999999999999999999999999987764321 223366665543
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.71 E-value=5.8 Score=32.50 Aligned_cols=72 Identities=19% Similarity=0.057 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc---CCCchHHHHHHHHHHHHhcCChhhH
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV---GVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555554444444444443333 44555565555555442 2234555555555555555555544
No 318
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=84.66 E-value=26 Score=30.56 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=46.1
Q ss_pred hcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhcccchh-hHH
Q 010961 250 NCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLF----HKMRRNGVLEDASTLASVLSACSSLGFLE-HGK 324 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~ 324 (496)
+.+++++|++++.. -...+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665542 234566777766655543 33344566666666555555544332211 233
Q ss_pred HHHHHHHH---cC--CCchHHHHHHHHHHHHhcCChhhHHHHHH
Q 010961 325 QVHGHACK---VG--VIDDVIVASALLDTYSKRGMPSDACKLFS 363 (496)
Q Consensus 325 ~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 363 (496)
.+.+.+.+ .| ..-++.....+...|.+.|++.+|+..|-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 33333332 11 11244555555566666666665555544
No 319
>PRK11906 transcriptional regulator; Provisional
Probab=84.64 E-value=36 Score=32.11 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=57.3
Q ss_pred ccH--HHHHHHHHHc-----CCHHHHHHHHHHHHHchhccCCcCHH-HHHHHHHHHH---------ccchHHHHHHHHHH
Q 010961 135 IAW--NSMIHCYVRN-----GFAREAVRLFKELNSDLVERLQCDAF-ILATVIGACA---------DLAALEYGKQIHSH 197 (496)
Q Consensus 135 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~ 197 (496)
..| ...+.+.... ...+.|+.+|.+.... +...|+-. .|..+..++. ...+...|.+..+.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~--~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNK--SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455 5555554442 1245666677776632 23555432 2222222111 11233344445555
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
.++.+.. |......+..+....++++.+...|++... || ..+|........-.|+.++|.+.+++..+
T Consensus 330 Aveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 330 VSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5554433 444444444444555556666666655543 33 22333333333344444444444444333
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.46 E-value=2.3 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
|..+...|...|++++|.+.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555555555444
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.10 E-value=2.6 Score=23.99 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567778888888888888888877755
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.09 E-value=3 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=14.0
Q ss_pred HHHHHhccCchhhHHHHHHHHHHc
Q 010961 442 VISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 442 l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
|..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666655543
No 323
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=83.52 E-value=22 Score=28.82 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=36.0
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHcCC--------------CchHHHHHHHHHHHHhcCChHHHHHhhhC
Q 010961 441 SVISACANISSLELGEQVFARVTIIGL--------------DSDQIISTSLVDFYCKCGFIKMDEYYLMQ 496 (496)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~e 496 (496)
+++..|.+.-++.++.++++.|.+..+ .+--.+.|.-.+.+.+.|.++.|..+++|
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344456666666777776666654322 22234566677788888888888888764
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.46 E-value=2.5 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666677777777777777666543
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.02 E-value=55 Score=32.96 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=41.2
Q ss_pred HHHHHHhcCChhhHHHHHHh--cCCCChHHHHHHHHHHHhcCChhHHH-HHHHhcC-CCCcchHHHHHHHHHh---CCCH
Q 010961 213 LVNLYGKCGDFNSANQVLNM--MKEPDDFCLSALISGYANCGKMNDAR-RVFDRTT-DTSSVMWNSMISGYIS---NNED 285 (496)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~-~~~~~~~~~l~~~~~~---~~~~ 285 (496)
....+.-.|+++.|.+++-. ....+.+.+...+..|.-.+-.+... .++..-. .+.+..+..||..|.+ ..++
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~ 343 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDP 343 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-H
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence 34455667999999999888 33355555555554443222222211 1111111 1223567777877765 4678
Q ss_pred HHHHHHHHHHHHCC
Q 010961 286 TEALLLFHKMRRNG 299 (496)
Q Consensus 286 ~~a~~~~~~m~~~g 299 (496)
.+|+++|-.+....
T Consensus 344 ~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 344 REALQYLYLICLFK 357 (613)
T ss_dssp HHHHHHHHGGGGS-
T ss_pred HHHHHHHHHHHHcC
Confidence 88888887766543
No 326
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.02 E-value=13 Score=32.12 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=22.2
Q ss_pred HHHHHhCCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
|.+++..+++.+++...-+--+. .++|. +...-|-.|.+.|.+....++-....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444555555544443332221 12222 22333333445555555555444333
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.87 E-value=45 Score=31.84 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAG 117 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 117 (496)
...+++..+.......-...+-.+|.. .+...|..++++|... ..+.-..+++++.+ .|+..-..|...|-+ +
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i 145 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I 145 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence 344566666666555555555555554 4556777788888777 55666777776655 344444445555544 6
Q ss_pred ChhHHHHHHhhcCCC------Cc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchH
Q 010961 118 ELKTARTLFNDMPRR------NA---IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL 188 (496)
Q Consensus 118 ~~~~a~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 188 (496)
+.+.+..+|..+..+ +. ..|..|... -..+.+..+.+..++... .|...-...+..+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~--lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK--LGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh--hccchHHHHHHHHHHHhccccCH
Confidence 667776666665421 11 134433321 134566666666666554 33444455566666677777788
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 189 EYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+++.+++..+.+..-+ |...-..++.
T Consensus 222 ~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 222 TEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 8888888777665433 4444444443
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.87 E-value=57 Score=33.01 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhh---HHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhH-HHHHHHHHhcC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFS---WNAMIEGFMKLGHKEKSLQLFNVMPQ-KNDFSW-NMLISGFAKAG 117 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~-~~l~~~~~~~~ 117 (496)
.|..... ..+.|++..+.++...+....... |..+...+ ....+++...++++-.. |-.... ...+..+.+.+
T Consensus 36 ~f~~A~~-a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 36 RYQQIKQ-AWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 4444444 447788888888887775422222 33332221 23357777777777654 433222 33344566778
Q ss_pred ChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010961 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 163 (496)
+++...+++..- ..+.........+....|+.++|.+....+-..
T Consensus 114 ~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 114 DWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred CHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 888888844232 345555677788888899988888777777653
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.84 E-value=20 Score=27.80 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=26.9
Q ss_pred cCChhhHHHHHHhcc--cC-chhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 352 RGMPSDACKLFSELK--VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
.++++++..+++.+. .| ....-..-...+...|++++|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 556666666666655 23 222333334455666777777777777665
No 330
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=82.07 E-value=10 Score=26.16 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHH
Q 010961 191 GKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDAR 258 (496)
Q Consensus 191 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (496)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. ..+..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44667777777743 44444444443345678888888888888 66667777777777666655443
No 331
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.61 E-value=16 Score=25.94 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 111 SGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
..+...|++++|..+.+.+..||...|-.|-. .+.|..+++..-+.+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34556677777777777776667666655543 355655666655555555
No 332
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.33 E-value=30 Score=28.82 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=17.0
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
.+|--+...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35555556666666666666666655443
No 333
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.09 E-value=31 Score=28.81 Aligned_cols=159 Identities=18% Similarity=0.051 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhcccchhhHHHHHHHHHHcCC--CchHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS-ACSSLGFLEHGKQVHGHACKVGV--IDDVIVASALLD 347 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 347 (496)
.+......+...+++..+...+.........+. ........ .+...|+++.+...+........ ......+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 333344444444455555555555544322221 11111111 44555556666655555543211 112222333333
Q ss_pred HHHhcCChhhHHHHHHhcc---cC-chhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChhhH
Q 010961 348 TYSKRGMPSDACKLFSELK---VY-DTILLNTMITVYSSCGRIEDAKHIFRTMPNK--S-LISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a 420 (496)
.+...++.+.+...+.... +. ....+..+...+...++++.+...+...... + ...+..+...+...+..+.+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 3455566666666666655 22 2345666666666666777777777666552 2 23444444555566678888
Q ss_pred HHHHHHHHhC
Q 010961 421 LDLFCNMNKL 430 (496)
Q Consensus 421 ~~~~~~m~~~ 430 (496)
...+.+....
T Consensus 256 ~~~~~~~~~~ 265 (291)
T COG0457 256 LEALEKALEL 265 (291)
T ss_pred HHHHHHHHHh
Confidence 8888877765
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.47 E-value=47 Score=30.47 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHhcCChhhHHHHHHhcccC-------chhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 337 DDVIVASALLDTYSKRGMPSDACKLFSELKVY-------DTILLNTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
....++..+...+.+.|.++.|...+..+... .+.....-++.+...|+.++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556777778888888888888877777632 344555566677777777777777765543
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.11 E-value=38 Score=29.22 Aligned_cols=149 Identities=10% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH---cCCC--cchhHHHHHHHHHHhcCC
Q 010961 148 GFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV---NGLD--FDSVLGSSLVNLYGKCGD 222 (496)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~ 222 (496)
..+++|+.-|++..+..+..-.-.-.....++....+.+++++....+.+++. +.+. -+....|++++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35566666666655521011111122344455566666666666665555542 1111 123345555555555555
Q ss_pred hhhHHHHHHhcCC-----CChH----HHHHHHHHHHhcCChhHHHHHHHhcCC------------CC---cchHHHHHHH
Q 010961 223 FNSANQVLNMMKE-----PDDF----CLSALISGYANCGKMNDARRVFDRTTD------------TS---SVMWNSMISG 278 (496)
Q Consensus 223 ~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~---~~~~~~l~~~ 278 (496)
.+-...+++.-.+ .+.. |-..+...|...+.+.+..+++.++.+ .+ ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 4444444433221 1111 223344445555555555544444322 00 1244444555
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 010961 279 YISNNEDTEALLLFHKMR 296 (496)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~ 296 (496)
|....+-.+...+|++..
T Consensus 201 YT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhcccHHHHHHHHHHH
Confidence 555555555555555443
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.04 E-value=9.9 Score=31.53 Aligned_cols=55 Identities=20% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 179 IGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
++.+.+.+...++.....+-++..+. +...-..++..++-.|++++|..-++..-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34444445555555555554444332 44455566666666777777665555443
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.99 E-value=43 Score=29.73 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC
Q 010961 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 334 (496)
.-++++++.++..=.+.|+-||..++..++..+.+.+++..|..+.-.|....
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34677888888888888999999999999999999999998888887776654
No 338
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.05 E-value=95 Score=33.14 Aligned_cols=252 Identities=9% Similarity=-0.006 Sum_probs=147.5
Q ss_pred HHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCh-hHHHHHHhhcCCCCcccHHHH
Q 010961 62 LLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL-KTARTLFNDMPRRNAIAWNSM 140 (496)
Q Consensus 62 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~l 140 (496)
.+.+.+..+|+..-...+..+.+.+..+....+...+..+|...-...+.++.+.+.. .....+...+..+|...-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 4455556688888888888888887655444455555556666555555555554322 122223333334566666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (496)
+.++...+..+ ...+.. ..+ .+|...-...+.++...+..+.. ..+. -.++..+-...+.++...
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~------D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG------DPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc------CCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHHh
Confidence 66666543211 122223 222 35555556667777666554322 1222 244666666777777776
Q ss_pred CChhh-H-HHHHHhcCCCChHHHHHHHHHHHhcCChhHHHH-HHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 221 GDFNS-A-NQVLNMMKEPDDFCLSALISGYANCGKMNDARR-VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 221 ~~~~~-a-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
+..+. + ..+...+.++|...-...+.++...|....+.. +...+.+++...-...+.++...+. +++...+..+.+
T Consensus 770 ~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~ 848 (897)
T PRK13800 770 GAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT 848 (897)
T ss_pred ccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc
Confidence 65443 2 334444556888888888888888887665533 4444555666566666777777765 445566666554
Q ss_pred CCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 298 NGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 298 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
.|+...-...+.++.+.+....+...+..+.+
T Consensus 849 ---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 ---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred ---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56667777777777776444566666666665
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.94 E-value=18 Score=30.10 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKL--DLRMDKFSLASVISA 445 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~ 445 (496)
+.+.-+..+.+.+.+.+++...+.-.+ | |...-..++..++-.|++++|..-++-.-.. ...+-..+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556777888888888888776554 3 4455667888899999999998877766553 134445678877765
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.94 E-value=76 Score=32.00 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=97.1
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHH-ccchHHHHHHHHHHHHHcCCCcchh-
Q 010961 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACA-DLAALEYGKQIHSHILVNGLDFDSV- 208 (496)
Q Consensus 133 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~- 208 (496)
+...|..||. .|+..++-+.+. ....|. ..++..+...+. ...+++.|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~--~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQ--FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4445555554 355556665542 233442 344555555554 6677888888777665433222211
Q ss_pred ----HHHHHHHHHHhcCChhhHHHHHHhcCC----CChHH----HHHH-HHHHHhcCChhHHHHHHHhcCC-----CC--
Q 010961 209 ----LGSSLVNLYGKCGDFNSANQVLNMMKE----PDDFC----LSAL-ISGYANCGKMNDARRVFDRTTD-----TS-- 268 (496)
Q Consensus 209 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~----~~~l-~~~~~~~~~~~~a~~~~~~~~~-----~~-- 268 (496)
....++..+.+.+... |...+++..+ ..... +..+ +..+...++...|.+.++.+.. .+
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234556666666555 7777766542 11112 2222 2222233677778877776543 12
Q ss_pred cchHHHHHHHH--HhCCCHHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHh--cccchhhHHHHHHHHH
Q 010961 269 SVMWNSMISGY--ISNNEDTEALLLFHKMRRNGV---------LEDASTLASVLSACS--SLGFLEHGKQVHGHAC 331 (496)
Q Consensus 269 ~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~g~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 331 (496)
...+-.++.+. .+.+..+++++.++.+..... .|...++..+++.++ ..|+++.+...++.+.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22333333332 345666777777777644321 234555666665543 5666667766666554
No 341
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.55 E-value=11 Score=33.50 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=49.7
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC---cccHHHHHHHHHHcCCHHHH
Q 010961 80 EGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPRRN---AIAWNSMIHCYVRNGFAREA 153 (496)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 153 (496)
.-|.++|.+++|++.|..... | |+.++..-..+|.+...+..|+.-......-| +.+|+.-+.+-...|...+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 346778888888888887765 4 77788888888888888777766555544322 12233333333333444444
Q ss_pred HHHHHHHHH
Q 010961 154 VRLFKELNS 162 (496)
Q Consensus 154 ~~~~~~~~~ 162 (496)
.+-++...+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 444444444
No 342
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.38 E-value=10 Score=26.14 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=17.3
Q ss_pred cCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCH
Q 010961 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFA 150 (496)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 150 (496)
.|+.+.|.+++..++ +.+..|...++++-..|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 345555555555555 4444555555555544443
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.18 E-value=5.9 Score=21.21 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666554
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.27 E-value=50 Score=29.00 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-----HcCCCchHHHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-----IIGLDSDQIIST 475 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 475 (496)
+++.....|..+|.+.+|.++.++..... +.+...+..|+..+...||--.+.+-++++. +.|+..|..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34455677889999999999999988864 5578889999999999999877777777653 367776665543
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.20 E-value=30 Score=28.43 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=42.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDA-----STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
+-+...|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|..--...++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3455666777777666666654 22221 22333333455555666655555555554321 11112222344555
Q ss_pred cCChhhHHHHHHhcc
Q 010961 352 RGMPSDACKLFSELK 366 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~ 366 (496)
...+++|+.-|.++.
T Consensus 181 ~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 181 MEKYEEALEDYKKIL 195 (271)
T ss_pred hhhHHHHHHHHHHHH
Confidence 555566655555554
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.93 E-value=82 Score=31.29 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=9.8
Q ss_pred hCCCHHHHHHHHHHHHH
Q 010961 281 SNNEDTEALLLFHKMRR 297 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~ 297 (496)
...+++.|+.+|+...+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34556666666666554
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.83 E-value=33 Score=26.68 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHHHcCCC-cchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 185 LAALEYGKQIHSHILVNGLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
.++++.+..++..|.-..+. +...++ -...+...|++++|.++|+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhc
Confidence 45555555555555433221 111122 22334556666666666666664
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.77 E-value=39 Score=29.42 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=47.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK- 219 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 219 (496)
|.+++..++|.+++...-+--+.+ ..++| .....-|-.|.+.+.+..+.++-+...+..-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~p-EklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVP-EKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCc-ccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 566777777777766554443311 12333 33344444566677777776666666553222233345555554443
Q ss_pred ----cCChhhHHHHH
Q 010961 220 ----CGDFNSANQVL 230 (496)
Q Consensus 220 ----~~~~~~a~~~~ 230 (496)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46777776666
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.54 E-value=4.5 Score=21.38 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.+..++.+.|++++|.+.|+++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555666666666666666655
No 350
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.09 E-value=92 Score=31.42 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=18.6
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 123 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.+.+..+++|| |..+.++|.-..+.+.+.++++++.+
T Consensus 202 v~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 202 VKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 34444444454 33344555555555555555555544
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.77 E-value=56 Score=28.76 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=52.4
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCchhhHHHHHH-----HHHHcCCCchHH
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMDKFSLASVISACANISSLELGEQVFA-----RVTIIGLDSDQI 472 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-----~~~~~~~~~~~~ 472 (496)
++..+....+..++..+++.+-.++|+..... +..-|...|..+|..-...||..-...+.. .+.+.++..+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~ 279 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDE 279 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHH
Confidence 44455556667777777777777777765554 334466677777777777777665555554 123455555666
Q ss_pred HHHHHHHHHHhc
Q 010961 473 ISTSLVDFYCKC 484 (496)
Q Consensus 473 ~~~~l~~~~~~~ 484 (496)
.-..|-+.+.+.
T Consensus 280 L~~~L~~LF~~v 291 (292)
T PF13929_consen 280 LRSQLSELFKKV 291 (292)
T ss_pred HHHHHHHHHHhc
Confidence 666555555443
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.84 E-value=27 Score=28.70 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=46.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCcCHH-----HHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAF-----ILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLY 217 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (496)
-+.+.|++++|..-|...... +++... .|..-..++.+.+.++.|..--...++.++. .......-..+|
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~----cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES----CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh----CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 355677777777777777662 222222 1222223445566666666666666655443 222222333455
Q ss_pred HhcCChhhHHHHHHhcCC
Q 010961 218 GKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~ 235 (496)
.+...++.|+.-|+++.+
T Consensus 179 ek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILE 196 (271)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 566666666666666654
No 353
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.81 E-value=1.1e+02 Score=31.89 Aligned_cols=28 Identities=21% Similarity=0.533 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.-|..|+..|...|+.++|++++.+...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 4689999999999999999999999877
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.63 E-value=1.1e+02 Score=31.62 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=115.7
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCC----CHH---HHHHHHH-HHhcccchhhHHHHHHHHHHc----CCCchHHHHHHH
Q 010961 278 GYISNNEDTEALLLFHKMRRNGVLE----DAS---TLASVLS-ACSSLGFLEHGKQVHGHACKV----GVIDDVIVASAL 345 (496)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~g~~~----~~~---~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 345 (496)
......++++|..++.+....-..| ... .++.+-. .....|+++.+..+-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3455778888888888776542222 222 2222222 234578888888888776653 233456667777
Q ss_pred HHHHHhcCChhhHHHHHHhcc----cCchhhHHHHH-----HHHHhcCCH--HHHHHHHhhCCC-----C-----ChhhH
Q 010961 346 LDTYSKRGMPSDACKLFSELK----VYDTILLNTMI-----TVYSSCGRI--EDAKHIFRTMPN-----K-----SLISW 404 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~-----~-----~~~~~ 404 (496)
..+..-.|++++|..+..+.. ..+...+.... ..+...|.. ...+..|..... . -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888899999988877665 23444332222 234455632 222233322221 1 12344
Q ss_pred HHHHHHHHhC-CChhhHHHHHHHHHhCCCCCCHHH--HHHHHHHHhccCchhhHHHHHHHHHHcCC----CchHHHHHHH
Q 010961 405 NSMIVGLSQN-GSPIEALDLFCNMNKLDLRMDKFS--LASVISACANISSLELGEQVFARVTIIGL----DSDQIISTSL 477 (496)
Q Consensus 405 ~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l 477 (496)
..+..++.+. +...++..-+.--......|-... +..|+......|+.++|...+.++..... .++.......
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4455555541 222223333332222222222222 23567777888999999999888876433 3333333333
Q ss_pred HHHH--HhcCChHHHHHhh
Q 010961 478 VDFY--CKCGFIKMDEYYL 494 (496)
Q Consensus 478 ~~~~--~~~g~~~~A~~~~ 494 (496)
+... ...|+.++|...+
T Consensus 664 v~~~lwl~qg~~~~a~~~l 682 (894)
T COG2909 664 VKLILWLAQGDKELAAEWL 682 (894)
T ss_pred hhHHHhcccCCHHHHHHHH
Confidence 4332 3567777766543
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.61 E-value=9.7 Score=22.37 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 356
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=74.35 E-value=79 Score=29.86 Aligned_cols=229 Identities=11% Similarity=0.020 Sum_probs=99.5
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 010961 79 IEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL 156 (496)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 156 (496)
+.++...| +.++..+..... ++...+.....++....+......+.+.+..++........+++.+.+...-.-.+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 55555555 345554444432 33333333333333222222244455555555555566666666665554444333
Q ss_pred HHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCC
Q 010961 157 FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEP 236 (496)
Q Consensus 157 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (496)
..-+.. ++.......+.++...+. + +...+....+ .++..+-..-+.++...+..+..-.+..-...+
T Consensus 123 ~~~L~~-------~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~ 190 (410)
T TIGR02270 123 EPLLAA-------SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDS 190 (410)
T ss_pred HHHhcC-------CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCC
Confidence 333321 233333344444443221 1 1222222222 334445555555555555544333333334445
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHh-cCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDR-TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
|...-..-+.+....|. ..|...+.. ...++......+.......| .+++...+..+.+. +. +-...+.++.
T Consensus 191 ~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~~--vr~~a~~AlG 263 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---AA--TRREALRAVG 263 (410)
T ss_pred CHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---hh--hHHHHHHHHH
Confidence 55555555555555555 444444433 33344433333333322222 22454444444432 11 3334444555
Q ss_pred cccchhhHHHHHH
Q 010961 316 SLGFLEHGKQVHG 328 (496)
Q Consensus 316 ~~~~~~~a~~~~~ 328 (496)
..|+...+.-+..
T Consensus 264 ~lg~p~av~~L~~ 276 (410)
T TIGR02270 264 LVGDVEAAPWCLE 276 (410)
T ss_pred HcCCcchHHHHHH
Confidence 5555544444443
No 357
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.00 E-value=23 Score=31.69 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=52.7
Q ss_pred HHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhh
Q 010961 346 LDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS---LISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 419 (496)
...|.+.|.+++|++.|.... +.|++++..-..+|.+...+..|+.-......-| +..|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 456888899999999888766 3477888888888888888777765544443322 1123333333333344444
Q ss_pred HHHHHHHHHhCCCCCC
Q 010961 420 ALDLFCNMNKLDLRMD 435 (496)
Q Consensus 420 a~~~~~~m~~~~~~p~ 435 (496)
|.+-++...+ +.|+
T Consensus 184 AKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPK 197 (536)
T ss_pred HHHhHHHHHh--hCcc
Confidence 4444444444 3555
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.59 E-value=11 Score=25.37 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=27.6
Q ss_pred hCCChhhHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhccCchhhHHHHH
Q 010961 413 QNGSPIEALDLFCNMNKLDLRM-D-KFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
...+.++|+..|+...+.-..| + ..++..++.+++..|++++.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777766643222 2 125666666677777666665543
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.94 E-value=8 Score=19.57 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.|..+...+...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555566666666666666655544
No 360
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.83 E-value=5.8 Score=29.89 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=25.1
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 446 (496)
+.|.-.+|..+|++|.+.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34677789999999999998888 467776554
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.48 E-value=14 Score=30.42 Aligned_cols=58 Identities=17% Similarity=0.022 Sum_probs=40.8
Q ss_pred HHHHHhCCChhhHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 408 IVGLSQNGSPIEALDLFCNMNK-LDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+......++.+......+.+.+ ....|++.+|..++.++...|+.++|.++.+++...
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333355555544444443332 124899999999999999999999999999988774
No 362
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.37 E-value=1.4e+02 Score=30.93 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=32.6
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 108 MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.+=+.|...|++++|++.-+.-+..-...+..-...+...+++..|-++|.++.+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3445677788888888776554211111233334556667777777777777644
No 363
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.34 E-value=29 Score=25.41 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577888888888999999998888877
No 364
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.99 E-value=27 Score=26.40 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHhhhCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 59 DALLLFDEMPR-----RNCFSWNAMIEGFMKLGHKEKSLQLFN 96 (496)
Q Consensus 59 ~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 96 (496)
++.++|+.|.. .-..-|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555543 122345555555555566666665554
No 365
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.73 E-value=64 Score=27.49 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCC--CcccHHHHHHHHHHcCCH
Q 010961 75 WNAMIEGFM--KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR--NAIAWNSMIHCYVRNGFA 150 (496)
Q Consensus 75 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~ 150 (496)
|...++++. ..++++.|.+.+-.-.-+.. --.-++..+...|+.+.|..+++.+..+ +...-..++.. ..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~-~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLIPW-FPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCCcc-cHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Confidence 444555544 44666777766644322111 1123566666677777777777776543 22222333333 666777
Q ss_pred HHHHHHHHHHHH
Q 010961 151 REAVRLFKELNS 162 (496)
Q Consensus 151 ~~a~~~~~~~~~ 162 (496)
.+|..+-+....
T Consensus 157 ~EAf~~~R~~~~ 168 (226)
T PF13934_consen 157 TEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHHHhCch
Confidence 777776655543
No 366
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.56 E-value=70 Score=27.20 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=21.5
Q ss_pred hhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCC
Q 010961 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68 (496)
Q Consensus 24 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 68 (496)
+.++.....+.......+ . .+...+.+++|.++|.+..
T Consensus 4 a~~l~k~AEkK~~~s~gF---~----lfgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 4 AVQLMKKAEKKLNGSGGF---L----LFGGSNKYEEAAELYERAA 41 (288)
T ss_pred HHHHHHHHHHhcccCCcc---c----ccCCCcchHHHHHHHHHHH
Confidence 445555555554333333 1 4555667888888877654
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.41 E-value=78 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (496)
++.....+...|.+.|++.+|+..|-..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 4445555566666666666665555433
No 368
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.82 E-value=93 Score=28.36 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=31.7
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh----ccCchhhHHHHHHHHHHcC
Q 010961 411 LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA----NISSLELGEQVFARVTIIG 466 (496)
Q Consensus 411 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~ 466 (496)
+.+.++..-+...+..+.++.+.--..||.+|--.+. ..+..++|.+..-.|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3455666667777777766655555556665543332 3455566666655555443
No 369
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=68.66 E-value=80 Score=27.54 Aligned_cols=148 Identities=9% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCCh--hhHHHHHHHHHhcCC------------HHHHHHHHhhCCCCChhhHHH
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNC--FSWNAMIEGFMKLGH------------KEKSLQLFNVMPQKNDFSWNM 108 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~ 108 (496)
..+.+++.+.+.+....|..+.+.+..-.. .+...++........ ...+.++++. ...|..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~-----f~~~l~ 158 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQE-----FPEYLE 158 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHc-----CcchHH
Confidence 566778888888888888877777665221 233333333222211 1112222222 122444
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-----CHHHHHHHHHHHH
Q 010961 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-----DAFILATVIGACA 183 (496)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-----~~~~~~~ll~~~~ 183 (496)
++-.|+|.-+...=..+|.....| ..|..-|.+.|+.+.|-.++--+... .+... +...-..++....
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~--e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNL--EGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhc--CCcchhhhHHHHHHHHHHHHHHH
Confidence 444455544444444555555322 35777778888888887766665442 12222 3334445566666
Q ss_pred ccchHHHHHHHHHHHHHcC
Q 010961 184 DLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~~ 202 (496)
..++++.+.++.+-+...+
T Consensus 232 ~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKALD 250 (258)
T ss_pred hcccHHHHHHHHHHHHHhC
Confidence 7777777777777666543
No 370
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.36 E-value=39 Score=26.33 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
.+.+.+++.|+++++. -..++..+...++.-.|..+++.+.+.+...+..|...-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 4556667778776653 3345566666777788999999988887777776666667777777643
No 371
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.80 E-value=76 Score=26.98 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=13.1
Q ss_pred HhCCCHHHHHHHHHHHHHCC
Q 010961 280 ISNNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g 299 (496)
...+++.+|+.+|++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777766553
No 372
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.74 E-value=52 Score=24.69 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALL 346 (496)
Q Consensus 287 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (496)
+..+-++.+....+.|++.....-+++|.+.+++..|..+|+-++.+- .+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 445556666777788888888888899999999999988888776542 22333444444
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.19 E-value=20 Score=24.22 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=27.1
Q ss_pred ccCchhhHHHHHHHHHHcCCCch--HHHHHHHHHHHHhcCChHHHHHh
Q 010961 448 NISSLELGEQVFARVTIIGLDSD--QIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
...+.++|+..|+...+.-..|. ..++..|+.+|+..|+++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777766554333222 25556666777777777666654
No 374
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.77 E-value=54 Score=24.62 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 420 ALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479 (496)
Q Consensus 420 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 479 (496)
..+-+..+..-.+-|++.....-+++|.+.+|+..|.++|+-+... ..+...+|..+++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 3444555556677888888888888888888888888888877543 2223334554443
No 375
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.53 E-value=32 Score=21.18 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 178 (496)
.+.-++.+.|++++|.+..+.+.+ +.|+......|
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~-----~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE-----IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH-----HTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh-----hCCCcHHHHHH
Confidence 355677888999999999988888 77776554444
No 376
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.31 E-value=95 Score=26.47 Aligned_cols=102 Identities=10% Similarity=0.179 Sum_probs=66.0
Q ss_pred HHHHHHHH--hcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhcCChh
Q 010961 45 NRLLQMYM--RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQK--NDFSWNMLISGFAKAGELK 120 (496)
Q Consensus 45 ~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 120 (496)
...++++- ..++++.|.+.+-.-.-+ ..--..+++++...|+.+.|+.+++....+ +...-..++.. ...+.+.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~ 157 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVT 157 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHH
Confidence 45555544 457788888777332111 122235788888899999999999987662 33333333444 5568999
Q ss_pred HHHHHHhhcCCCC-cccHHHHHHHHHHcC
Q 010961 121 TARTLFNDMPRRN-AIAWNSMIHCYVRNG 148 (496)
Q Consensus 121 ~a~~~~~~~~~~~-~~~~~~li~~~~~~~ 148 (496)
+|..+-+...++. ...+..++..+....
T Consensus 158 EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 158 EAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 9998888877643 457777777777444
No 377
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=63.31 E-value=20 Score=26.96 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=26.7
Q ss_pred HHHHHHhhhCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHhh
Q 010961 58 TDALLLFDEMPRRNC-----FSWNAMIEGFMKLGHKEKSLQLFNV 97 (496)
Q Consensus 58 ~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~ 97 (496)
+++.++|..|.+.++ .-|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 446667777765433 3466666667778888888888763
No 378
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=62.65 E-value=53 Score=27.65 Aligned_cols=91 Identities=15% Similarity=0.046 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhhH--HHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KSLISW--NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 442 (496)
..-++.|+--|.-...+.+|-+.|..-.. .+..++ ..-|......|+.++|++........-+..|...+-.|
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHL 105 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHH
Confidence 33455555555555555555555544321 122222 23455566777777777777665543333343222111
Q ss_pred HH----HHhccCchhhHHHHHH
Q 010961 443 IS----ACANISSLELGEQVFA 460 (496)
Q Consensus 443 ~~----~~~~~g~~~~a~~~~~ 460 (496)
.. -..+.|..++|.+..+
T Consensus 106 q~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH
Confidence 11 1345566666666655
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.49 E-value=31 Score=22.07 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=11.8
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Q 010961 175 LATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
...+|.++...|++++|.++++.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 380
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=61.85 E-value=20 Score=24.69 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=25.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCC
Q 010961 101 KNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 149 (496)
.++.|-...-...+...+.+++.++++.++.++..+|....+++-..|.
T Consensus 28 ~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 28 RGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred cCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 3333433333334444455556666665555555555555555555443
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.99 E-value=2.4e+02 Score=30.28 Aligned_cols=262 Identities=10% Similarity=-0.010 Sum_probs=155.4
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCC
Q 010961 90 KSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169 (496)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 169 (496)
....+.+.+..+|+.+-...+..+.+.+..+-...+...+..+|...-...+.++.+.+........+..+.. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~------~ 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG------S 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc------C
Confidence 3345566666788888888888888887755444455555556665555666666554332222233333333 1
Q ss_pred cCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHH
Q 010961 170 CDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249 (496)
Q Consensus 170 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 249 (496)
+|..+-...+.++...+..+ ...+.. +.+ .+|..+-...+.++...+..+ .+...+.+++...-...+.++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHH
Confidence 55555556666665443211 112222 222 345666666677776655443 3455566788877777888888
Q ss_pred hcCChhH-HHHHHHh-cCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHH
Q 010961 250 NCGKMND-ARRVFDR-TTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVH 327 (496)
Q Consensus 250 ~~~~~~~-a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 327 (496)
..+..+. +...+.. +.+++...-...+.++...|....+...+....+ .++..+-...+.++...+.. ++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHH
Confidence 7776543 3343444 4567888888888899998887666555555554 35555666677777777654 455555
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc-cCchhh
Q 010961 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTIL 372 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~ 372 (496)
..+.+ .++..+-...+.++.+.+....+...+.... ..|...
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 55543 4566677777777777643445666665554 444433
No 382
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.24 E-value=65 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
..-|..++..|...|.+++|++++.+...
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34678888888889999999999888876
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.71 E-value=36 Score=20.41 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=14.7
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
.|-..++...+++|.+.|+..+...+..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 444445555555555555554444444433
No 384
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.47 E-value=33 Score=24.02 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHhhhCCCC-----ChhhHHHHHHHHHhcCCH
Q 010961 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR-----NCFSWNAMIEGFMKLGHK 88 (496)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 88 (496)
|+....--.+...+...|++++|++.+-.+.+. +...-..++..+.-.|.-
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 444446667788888888888888776665542 345566677776666653
No 385
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.49 E-value=1.3e+02 Score=26.58 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 331 (496)
+++...+.|...|.+.+|.++-+..+... +.+...+..++..+...|+--.+.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44455577888888888888888877753 5677777788888888888777766666554
No 386
>PRK09462 fur ferric uptake regulator; Provisional
Probab=57.26 E-value=86 Score=24.48 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44555556555555554444444444444555444
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.92 E-value=58 Score=26.82 Aligned_cols=34 Identities=18% Similarity=-0.071 Sum_probs=21.2
Q ss_pred CCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
..|+..+|..++.++...|+.++|.+...++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566666666666666666666666666665543
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.56 E-value=41 Score=20.14 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=17.2
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010961 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVL 311 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 311 (496)
+.|-.+++...+++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555566665555555555555444
No 389
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.50 E-value=2.5e+02 Score=29.20 Aligned_cols=255 Identities=13% Similarity=0.121 Sum_probs=118.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCh--hhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHH
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQKND--FSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 155 (496)
+=..|...|++++|+++-+.- |+. ..+..-+..|...+++..|-+++.++.+ .+..+.-=+....+.+ ++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~----~FEEVaLKFl~~~~~~-~L~ 436 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAETLS----SFEEVALKFLEINQER-ALR 436 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----hHHHHHHHHHhcCCHH-HHH
Confidence 344677889999999887654 332 2344445667778888888888888743 3444444444444444 333
Q ss_pred HH-HHHHHchhccCCcCHHHHHHHHHHH------HccchHH----HHHHHHHH--------HHH-cCCCcchhHHHHHHH
Q 010961 156 LF-KELNSDLVERLQCDAFILATVIGAC------ADLAALE----YGKQIHSH--------ILV-NGLDFDSVLGSSLVN 215 (496)
Q Consensus 156 ~~-~~~~~~~~~~~~p~~~~~~~ll~~~------~~~~~~~----~a~~~~~~--------~~~-~~~~~~~~~~~~l~~ 215 (496)
.| .+=.. +++|...+=..++..+ .+.++.+ .+..-++. +.. ....-+...+.+...
T Consensus 437 ~~L~KKL~----~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~ 512 (911)
T KOG2034|consen 437 TFLDKKLD----RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQ 512 (911)
T ss_pred HHHHHHHh----hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHH
Confidence 32 22222 2444443333322221 1111111 11111110 000 000111112222233
Q ss_pred HHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcc-hHHHHHHHHHhCCCHHHHHHHHHH
Q 010961 216 LYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSV-MWNSMISGYISNNEDTEALLLFHK 294 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 294 (496)
.+...|+.+....+-..+ ..|..++..++..+.+++|.+++.....+... -|... .....+.+....|..
T Consensus 513 l~~~~~~~e~ll~fA~l~-----~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~----Li~~~p~~tV~~wm~ 583 (911)
T KOG2034|consen 513 LLASHGRQEELLQFANLI-----KDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPE----LITHSPKETVSAWMA 583 (911)
T ss_pred HHHHccCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhH----HHhcCcHHHHHHHHH
Confidence 333445555444433332 23566777788888888888888765333211 11111 112233333333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccc---chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 295 MRRNGVLEDASTLASVLSACSSLG---FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 295 m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
+.+ .........++..+.+.+ ....+...++.....-...++..+|.++..|++..+-
T Consensus 584 ~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 584 QKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred ccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 322 222223333444444432 3334444444444444456777888888888765443
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.35 E-value=94 Score=24.19 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhcc--CCcCHHHHHHHHHHHHccch-HHHHHHHHHHHHHcCCCcchhHHHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVER--LQCDAFILATVIGACADLAA-LEYGKQIHSHILVNGLDFDSVLGSSL 213 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 213 (496)
.|.++.-....+++...+.+++.+..-.... -..+...|.+++++.++... --.+..++..+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555566666666666553310000 12345568888888877666 55677788888888888888888888
Q ss_pred HHHHHhcC
Q 010961 214 VNLYGKCG 221 (496)
Q Consensus 214 ~~~~~~~~ 221 (496)
+.++.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 88877653
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.23 E-value=69 Score=22.58 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=10.5
Q ss_pred HHHccchHHHHHHHHHHHHH
Q 010961 181 ACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~ 200 (496)
.....|++++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34455555555555555443
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.63 E-value=28 Score=30.72 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVL 311 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~ 311 (496)
-|+..|....+.|++++|++++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888888888888888888888888766555554433
No 393
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.55 E-value=15 Score=27.85 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
...|.-..|..+|++|.+.|-+||. ++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999985 56666543
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.23 E-value=1.1e+02 Score=28.65 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHhhcCC----------
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQKND----------------FSWNMLISGFAKAGELKTARTLFNDMPR---------- 131 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 131 (496)
++..+....++.+-++..+....|+. ++.-.|++..+-.|++..|+++++.+.-
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~ 160 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVP 160 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCc
Confidence 45556666777776666666544321 3445567778889999999999887752
Q ss_pred -CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 132 -RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 132 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
-.+.+|..+.-+|.-.+++.+|++.|....-
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1456788888899999999999999987754
No 395
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.82 E-value=1.2e+02 Score=29.06 Aligned_cols=290 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHH-------------HHHHHHHHHHHcCCCcchhHHHHH
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE-------------YGKQIHSHILVNGLDFDSVLGSSL 213 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~-------------~a~~~~~~~~~~~~~~~~~~~~~l 213 (496)
.+.++..+++++.+.. .|.......++.....+.+.|... .+...-+.+--....-+...+...
T Consensus 30 ~~~~d~cl~~l~~l~t---~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~ 106 (696)
T KOG2471|consen 30 NSEFDRCLELLQELET---RGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNF 106 (696)
T ss_pred CcchHHHHHHHHHHHh---ccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhh
Q ss_pred HHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHH--------HHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCH
Q 010961 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG--------YANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285 (496)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (496)
.-.|.....+..|+++...........-..+... ++...+.++|+.++. .-.+-.-.......|+.
T Consensus 107 aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~------vL~~~~~~~~~~~~gn~ 180 (696)
T KOG2471|consen 107 AVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLN------VLAEIEAEKRMKLVGNH 180 (696)
T ss_pred heeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhccccccc
Q ss_pred HHHHHHHHHHH----HCCC---CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhH
Q 010961 286 TEALLLFHKMR----RNGV---LEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDA 358 (496)
Q Consensus 286 ~~a~~~~~~m~----~~g~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 358 (496)
..+-.+.+..- +++. .|....-.--+.++....++..+..-.+...... ..+....-.--+.+.-.|++.+|
T Consensus 181 ~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 181 IPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred cchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHhcc------------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---------------------CChhhHH
Q 010961 359 CKLFSELK------------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---------------------KSLISWN 405 (496)
Q Consensus 359 ~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~~ 405 (496)
.+++.... -..-..||.|.-.+.+.|.+..+..+|.+..+ +.....-
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 447 (496)
...-.|...|++-.|.+.|.+.... +.-++..|-.|..+|.
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
No 396
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=54.60 E-value=37 Score=23.41 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=32.8
Q ss_pred hhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHH
Q 010961 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKE 89 (496)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (496)
..++..+.+.|+-.+.- .-..-+...+.++|.++++.+++++..+|.....++-..|...
T Consensus 19 ~~v~~~L~~~~Vlt~~~-----~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 19 KYLWDHLLSRGVFTPDM-----IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHhcCCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 44556666665432221 1222233455666666666666666666766666666655443
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.49 E-value=2.7e+02 Score=29.00 Aligned_cols=286 Identities=14% Similarity=0.060 Sum_probs=139.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH----HHHhcCChhHHHHHHhhcCCCCcccHHH--HHH--HHHHcCCH
Q 010961 79 IEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLIS----GFAKAGELKTARTLFNDMPRRNAIAWNS--MIH--CYVRNGFA 150 (496)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~--li~--~~~~~~~~ 150 (496)
...|...|.+++|++---...+|. .-..++. -+...+++...+.+.+.++.+-...+.. +.. ......++
T Consensus 354 a~w~~~~g~~~eAI~hAlaA~d~~--~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~ 431 (894)
T COG2909 354 AEWFAEHGLPSEAIDHALAAGDPE--MAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRL 431 (894)
T ss_pred HHHHHhCCChHHHHHHHHhCCCHH--HHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccCh
Confidence 344555555555554443333322 1122222 1334566666666676666432222222 222 23456888
Q ss_pred HHHHHHHHHHHHchhc-cCCcCHH---HHHHHH-HHHHccchHHHHHHHHHHHHHc----CCCcchhHHHHHHHHHHhcC
Q 010961 151 REAVRLFKELNSDLVE-RLQCDAF---ILATVI-GACADLAALEYGKQIHSHILVN----GLDFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 151 ~~a~~~~~~~~~~~~~-~~~p~~~---~~~~ll-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 221 (496)
++|..++.+....-.. +..+... .++.+- ......|+++.+.++.+...+. -..+....+..+..+..-.|
T Consensus 432 ~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G 511 (894)
T COG2909 432 AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG 511 (894)
T ss_pred HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc
Confidence 9998888888763111 1111111 233332 2334668888888887776653 22334455666777777889
Q ss_pred ChhhHHHHHHhcCC----CChHHHH---HHH--HHHHhcCChhHHH--HHHHhcC-----CCC-----cchHHHHHHHHH
Q 010961 222 DFNSANQVLNMMKE----PDDFCLS---ALI--SGYANCGKMNDAR--RVFDRTT-----DTS-----SVMWNSMISGYI 280 (496)
Q Consensus 222 ~~~~a~~~~~~~~~----~~~~~~~---~l~--~~~~~~~~~~~a~--~~~~~~~-----~~~-----~~~~~~l~~~~~ 280 (496)
++++|..+.....+ -++..+. .+. ..+...|+...+. ..|.... +.. ...+..+..++.
T Consensus 512 ~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~ 591 (894)
T COG2909 512 ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL 591 (894)
T ss_pred hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 99999888776654 3443332 222 2244556332222 2222111 111 223444444444
Q ss_pred hC-CCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhcccchhhHHHHHHHHHHcCCCc----hHHHHHHH--HHHHHh
Q 010961 281 SN-NEDTEALLLFHKMRRNGVLEDASTLA--SVLSACSSLGFLEHGKQVHGHACKVGVID----DVIVASAL--LDTYSK 351 (496)
Q Consensus 281 ~~-~~~~~a~~~~~~m~~~g~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l--~~~~~~ 351 (496)
+. +...++..-+.--......|-...+. .++......|++++|...++++......+ +-..-... ......
T Consensus 592 r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~ 671 (894)
T COG2909 592 RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLA 671 (894)
T ss_pred HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcc
Confidence 41 11222222222222222222222222 56666778899999988888877643222 21111112 223345
Q ss_pred cCChhhHHHHHHhcc
Q 010961 352 RGMPSDACKLFSELK 366 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~ 366 (496)
.|+...+.....+-.
T Consensus 672 qg~~~~a~~~l~~s~ 686 (894)
T COG2909 672 QGDKELAAEWLLKSG 686 (894)
T ss_pred cCCHHHHHHHHHhcc
Confidence 677777766665533
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.65 E-value=29 Score=30.64 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHH
Q 010961 439 LASVISACANISSLELGEQVFARVTIIGLDSDQII 473 (496)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 473 (496)
|+.-|....+.||+++|++++++.++.|+.--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 45566666666666666666666666665433333
No 399
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=53.29 E-value=1e+02 Score=24.86 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=17.3
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.++.-.|.++++.+.+.+..++..|...-+..+...|-
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33444455555555555444444443333444444443
No 400
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.64 E-value=2.2e+02 Score=27.42 Aligned_cols=231 Identities=11% Similarity=0.035 Sum_probs=113.9
Q ss_pred hhHHHHHHHhcCC--CCcchHHHHHHHHHhC------CCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhcccchhhH
Q 010961 254 MNDARRVFDRTTD--TSSVMWNSMISGYISN------NEDTEALLLFHKMRRN-GVLE-DASTLASVLSACSSLGFLEHG 323 (496)
Q Consensus 254 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~------~~~~~a~~~~~~m~~~-g~~~-~~~~~~~l~~~~~~~~~~~~a 323 (496)
.+....+|+...+ ++...|+..|..+... ......+.+|+..... +..+ ....|..+.-.++.....
T Consensus 298 ~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~--- 374 (568)
T KOG2396|consen 298 ESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA--- 374 (568)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH---
Confidence 3344466666555 3445566666555432 1344455556555443 2333 234455554444443322
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcC-ChhhH-HHHHHhcc----cCchhhHHHHH-HHHHhcCCHHHHHHHHhhC
Q 010961 324 KQVHGHACKVGVIDDVIVASALLDTYSKRG-MPSDA-CKLFSELK----VYDTILLNTMI-TVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a-~~~~~~~~----~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~ 396 (496)
...-..+...++..+...+..-+....... +++-. .+.+..+. .+....|++.. ..+....-.+.....+..+
T Consensus 375 r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~ 454 (568)
T KOG2396|consen 375 REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV 454 (568)
T ss_pred hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 222222233334455555554444444221 11111 11122222 11222233332 1111222233445555666
Q ss_pred CCCChhhH-HHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCchhhHHHHHHHHH-HcCCCchHH
Q 010961 397 PNKSLISW-NSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN--ISSLELGEQVFARVT-IIGLDSDQI 472 (496)
Q Consensus 397 ~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~-~~~~~~~~~ 472 (496)
..++..++ +.++..+...|-..+|...+..+... -+|+...|..++..-.. +=+..-+..+++.|. ..| .|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChH
Confidence 66766654 45677777788888888888888876 25567777777664221 123666777787664 456 4555
Q ss_pred HHHHHHHHHHhcCChHHH
Q 010961 473 ISTSLVDFYCKCGFIKMD 490 (496)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A 490 (496)
.|...+..=...|..+.+
T Consensus 532 lw~~y~~~e~~~g~~en~ 549 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENC 549 (568)
T ss_pred HHHHHHHhhccCCCcccc
Confidence 665555544456655443
No 401
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.58 E-value=1.1e+02 Score=23.88 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=40.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 291 LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 291 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+.+.+.+.|++++..= ..++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4455667777766543 34556666666668888888888887766666554445555555553
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.55 E-value=2.1e+02 Score=27.00 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHhcCChhhHHHHHHhc
Q 010961 345 LLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~ 365 (496)
|++.++-.|++..|+++++.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc
Confidence 344444555555555555444
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.99 E-value=2.1e+02 Score=26.85 Aligned_cols=54 Identities=13% Similarity=-0.008 Sum_probs=27.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCcCHH--HHHHHHHHHH--ccchHHHHHHHHHHHHH
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAF--ILATVIGACA--DLAALEYGKQIHSHILV 200 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 200 (496)
.+.+.+++..|.++|+++.. . ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~---r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLR---R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHH---h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34466777777777777766 2 333333 2333333332 23344555555555443
No 404
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.97 E-value=1.2e+02 Score=24.71 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+++|...|++..+. .|+..+|+.-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 44555566665554 788778877666553 3445555554443
No 405
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.94 E-value=3.4e+02 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcC--ChhhHHHHHHhcCCCChH
Q 010961 209 LGSSLVNLYGKCG--DFNSANQVLNMMKEPDDF 239 (496)
Q Consensus 209 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 239 (496)
-...++.+|.+.+ +++.|+..+.++.+.+..
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~ 846 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREEDPE 846 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhcChH
Confidence 3456777777777 778888888777765433
No 406
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.93 E-value=1.1e+02 Score=23.78 Aligned_cols=102 Identities=10% Similarity=0.114 Sum_probs=65.3
Q ss_pred HHHHcCCCcchh--HHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHH
Q 010961 197 HILVNGLDFDSV--LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNS 274 (496)
Q Consensus 197 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (496)
.|.+.+..++.. ..+.++.-....+++.....+++.+.--+...+. ...+...|.+
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~----------------------~~~~~ssf~~ 84 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII----------------------GWLDNSSFHI 84 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh----------------------hhcccchHHH
Confidence 344444444443 3466777777777888888887777321110000 0123567888
Q ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccch
Q 010961 275 MISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320 (496)
Q Consensus 275 l~~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 320 (496)
++.+..+..- --.+..+|.-|++.+.+++..-|..++.++.+....
T Consensus 85 if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 85 IFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 8888866555 345677888888888899999999999988775433
No 407
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.78 E-value=2.4e+02 Score=27.16 Aligned_cols=415 Identities=11% Similarity=0.017 Sum_probs=214.4
Q ss_pred HHhhhhccC--ccchhhhhhHHHHHhccCCCch-HHHHHHHHH-HHhcCChHHHHHHhhhCC----C-CC-----hhhHH
Q 010961 11 LLQSCNTHH--SIHVGKQLHLHFLKKGILNSTL-PIANRLLQM-YMRCGNPTDALLLFDEMP----R-RN-----CFSWN 76 (496)
Q Consensus 11 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~~~~A~~~~~~~~----~-~~-----~~~~~ 76 (496)
+......++ ....+....+......++.... .+.-.|... +.-..+++.|..-+++.- . |+ ..++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 334444454 4445555555555443322111 122233332 334567777776665432 1 22 24677
Q ss_pred HHHHHHHhcC-CHHHHHHHHhhCCC--CCh-----hhHHHHHHHHHhcCChhHHHHHHhhcCC-CCc--ccHHHHHHHHH
Q 010961 77 AMIEGFMKLG-HKEKSLQLFNVMPQ--KND-----FSWNMLISGFAKAGELKTARTLFNDMPR-RNA--IAWNSMIHCYV 145 (496)
Q Consensus 77 ~l~~~~~~~~-~~~~a~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~--~~~~~li~~~~ 145 (496)
.|...+.... .+..+..++++..+ .+. .....|+....-..++..|.+++.--.+ .|. ..|..++..+.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLS 172 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHH
Confidence 7778888766 77888888887765 222 2234567777888999999999765443 222 23333332222
Q ss_pred ------Hc---CCHHHHHHHHHHHHHchhccCCcCHHH------HHHH--HHHHHccchHHHHHHHHHHHHHc---CCCc
Q 010961 146 ------RN---GFAREAVRLFKELNSDLVERLQCDAFI------LATV--IGACADLAALEYGKQIHSHILVN---GLDF 205 (496)
Q Consensus 146 ------~~---~~~~~a~~~~~~~~~~~~~~~~p~~~~------~~~l--l~~~~~~~~~~~a~~~~~~~~~~---~~~~ 205 (496)
.. .++..+.....++.++ +.+|... |... +..|.-.|+...+...++++.+. +-++
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n----~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQN----ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhc----cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 22 3445555556666653 5555432 2222 23344567777666666666542 2221
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHHHH-----HHHHHHHhc--CChhHHHHHHHhcCCCC--c-----
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLS-----ALISGYANC--GKMNDARRVFDRTTDTS--S----- 269 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~-----~l~~~~~~~--~~~~~a~~~~~~~~~~~--~----- 269 (496)
+. .+..- . .| .--..+|..+.+ ...-.|. .+..+|.+. +-.|+++...++..+.+ .
T Consensus 249 ~~-~h~e~--i---lg--sps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm 320 (629)
T KOG2300|consen 249 SR-GHDEK--I---LG--SPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSM 320 (629)
T ss_pred CC-Ccccc--c---cC--CCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 10 00000 0 00 000111222211 0111111 112222211 12344444444444433 1
Q ss_pred ---chHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHH-HHhcccchhhHHHHHHHHHHcCCCc
Q 010961 270 ---VMWNSMISGYISNNEDTEALLLFHKMRRNG-VLEDA-------STLASVLS-ACSSLGFLEHGKQVHGHACKVGVID 337 (496)
Q Consensus 270 ---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~ 337 (496)
.+...++-+-.-.|++.+|++-+..|.+.- -.|.+ .....++. .|+..+.++.|+.-|....+.-...
T Consensus 321 ~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~ 400 (629)
T KOG2300|consen 321 FKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI 400 (629)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH
Confidence 122223333345799999999999987641 13331 11223333 3456788999998888877654333
Q ss_pred hHH--HHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHH--------HHHH--HHhcCCHHHHHHHHhhCCC-CChh--
Q 010961 338 DVI--VASALLDTYSKRGMPSDACKLFSELKVYDTILLNT--------MITV--YSSCGRIEDAKHIFRTMPN-KSLI-- 402 (496)
Q Consensus 338 ~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~-~~~~-- 402 (496)
|.. .-..+.-.|.+.|+-+.-.++++.+.+++..++.+ ++.+ ....+++.+|..++.+..+ .|..
T Consensus 401 dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 401 DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 432 33446677888998888888888888776554432 1222 2367899999998887665 2221
Q ss_pred ------hHHHHHHHHHhCCChhhHHHHHHHHHh-CCCCCCHH
Q 010961 403 ------SWNSMIVGLSQNGSPIEALDLFCNMNK-LDLRMDKF 437 (496)
Q Consensus 403 ------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~ 437 (496)
....|...+...|+..++.+...-..+ ..-.||..
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 233345566678888888777665433 22245543
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.65 E-value=1.1e+02 Score=23.18 Aligned_cols=43 Identities=2% Similarity=0.061 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 419 EALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
.+.++|+.|..+|+-- -+..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666777776666543 344566666666666777777666654
No 409
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.59 E-value=32 Score=22.05 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 436 KFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
...--.+|.++...|++++|.++++.+.
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334455666666666666666666554
No 410
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.21 E-value=3e+02 Score=28.12 Aligned_cols=309 Identities=10% Similarity=0.023 Sum_probs=151.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh--cCChhHHHHHHhhcCC-CCc-ccHHHHHHHHHHcCC
Q 010961 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK--AGELKTARTLFNDMPR-RNA-IAWNSMIHCYVRNGF 149 (496)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~-~~~~~li~~~~~~~~ 149 (496)
.|.....+ .+.|++..+.++..++...-...|..-...... ....++...++++-+. |-. ..-...+..+.+.++
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccC
Confidence 34333333 567889999888888865333333322222222 2356777777777654 321 122334455667788
Q ss_pred HHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChh-----
Q 010961 150 AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN----- 224 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 224 (496)
+...++++.. .+.+...-.....+....|+.+.|......+=..|.. .+..++.++..+.+.|.+.
T Consensus 115 w~~~~~~~~~--------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 115 WRGLLAFSPE--------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHHHHHhcCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHH
Confidence 8877763311 2234444455667777777776665555555444432 3445566666666555433
Q ss_pred -------------hHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHH--HhCCCHHHHH
Q 010961 225 -------------SANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGY--ISNNEDTEAL 289 (496)
Q Consensus 225 -------------~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~ 289 (496)
.|..+...+..........++..+.. ...+...+... .++...-...+.++ ....+.+.|.
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTT-GPTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhcc-CCChhhHHHHHHHHHHHHHhCHHHHH
Confidence 33333333311111111122222211 22222222221 11211111111121 2344567788
Q ss_pred HHHHHHHHCC-CCCCHH--HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 290 LLFHKMRRNG-VLEDAS--TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 290 ~~~~~m~~~g-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
.++....... ..+... +...+.......+..+++...++...... .+......-+..-...++++.+...+..|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 262 LMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 8887764432 322222 22222222223222455555555433222 233334444555557788888877777775
Q ss_pred c---CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 367 V---YDTILLNTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 367 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
+ ....-.--+..++...|+.++|...|+.+..
T Consensus 340 ~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 340 MEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 2222334456666667888888888887754
No 411
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.95 E-value=48 Score=24.28 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCh--hhHHHHHHHHHhCC--ChhhHHHHHHHHHhCCCC
Q 010961 374 NTMITVYSSCGRIEDAKHIFRTMPNKSL--ISWNSMIVGLSQNG--SPIEALDLFCNMNKLDLR 433 (496)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~ 433 (496)
..++..|...|+.++|...+.++.-|+. .....++..+...+ .-+....++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 4567778888899999998888766622 12233333333332 233355566666666543
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.03 E-value=1.1e+02 Score=24.89 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=37.3
Q ss_pred CHHHHHHHHhhCCC--CCh---------hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010961 385 RIEDAKHIFRTMPN--KSL---------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450 (496)
Q Consensus 385 ~~~~a~~~~~~~~~--~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 450 (496)
-++.|+.+|+.+.+ +-. ..-...+..|.+.|.+++|.+++++... .|+......-+....+.+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 36778888877764 111 1122345667788888888888888776 444444444444444433
No 413
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.91 E-value=1e+02 Score=22.47 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
.++..|...|+.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 45556666677777777776653
No 414
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.56 E-value=2.3e+02 Score=28.92 Aligned_cols=28 Identities=4% Similarity=0.011 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHH
Q 010961 173 FILATVIGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 173 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 200 (496)
.+...++-.|....+++...++.+.++.
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 3344444444444555555555554443
No 415
>PRK10941 hypothetical protein; Provisional
Probab=48.36 E-value=1.9e+02 Score=25.44 Aligned_cols=80 Identities=9% Similarity=-0.014 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH-cCCCchHHHHHHHHHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI-IGLDSDQIISTSLVDFY 481 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 481 (496)
..+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++ +.-.|+.......+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 35566677888899999999999888863 44555566555568888888888888887654 44566666666666655
Q ss_pred Hh
Q 010961 482 CK 483 (496)
Q Consensus 482 ~~ 483 (496)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 416
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.97 E-value=2.6e+02 Score=26.80 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=25.1
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
....|+++.+.+.+....+. +.....+...++....+.|++++|...-.-|.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 34455566555555544332 12223344455555555555555555444433
No 417
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=47.64 E-value=2e+02 Score=25.47 Aligned_cols=63 Identities=10% Similarity=-0.062 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc-CCCchHHHHHHHHHHHHhcCChhhHHHHHH
Q 010961 301 LEDASTLASVLSACSSLGFLEHGKQVHGHACKV-GVIDDVIVASALLDTYSKRGMPSDACKLFS 363 (496)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 363 (496)
.++..+...++..++..+++..-.+++...... +...|...|..+++.....|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 444444455555555555555555555444333 333444445555555555555444444444
No 418
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=47.10 E-value=50 Score=23.17 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcC
Q 010961 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148 (496)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 148 (496)
+.|-...-...+...+.+++.++++.++..+..+|..+..++-..+
T Consensus 34 vlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 34 ILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3333333333334445566666666666666666666666664433
No 419
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=46.33 E-value=4e+02 Score=28.56 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHH-------HHHHHHhcC---ChhHHHHHHhhcCCCCccc--HHHHH
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMPQ--KND-FSWNM-------LISGFAKAG---ELKTARTLFNDMPRRNAIA--WNSMI 141 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~-------l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~li 141 (496)
++=.++...+.++.|+..++++.. |+. ..|.+ ++.-....| .+++|+.-|+.+....... |-.-.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA 559 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence 344678888899999999999876 432 22222 222222333 4788888888887643333 44444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHchhccCCcC
Q 010961 142 HCYVRNGFAREAVRLFKELNSDLVERLQCD 171 (496)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~ 171 (496)
-+|-+.|++++-++.+.-..+. .+..|.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 587 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKR--YSQHPE 587 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh--cCCCCc
Confidence 4566788888888877766654 344443
No 420
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.08 E-value=99 Score=21.43 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
++|+.....|+..|+.+|..+++.+...=.++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555556666666666666665555555555555555543
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.23 E-value=1.2e+02 Score=22.15 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=36.9
Q ss_pred CccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 19 HSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98 (496)
Q Consensus 19 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 98 (496)
...++|..+.+++...+..... +.-.-+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~--v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEV--VALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHH--HHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456666666666665531111 21222234456666666644444444466666555533 3556666666665554
Q ss_pred CC
Q 010961 99 PQ 100 (496)
Q Consensus 99 ~~ 100 (496)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 43
No 422
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.63 E-value=74 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=13.9
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
.-++.+.|++++|.+..+.+.+. .|+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~--eP~N 34 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI--EPDN 34 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH--TTS-
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh--CCCc
Confidence 34455566666666666665553 4443
No 423
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=44.61 E-value=1e+02 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.007 Sum_probs=9.8
Q ss_pred CChhhHHHHHHHHHhCCCCC
Q 010961 415 GSPIEALDLFCNMNKLDLRM 434 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p 434 (496)
+++.++...+.++...|+++
T Consensus 18 ~~~~~~~~~~~~l~~~G~s~ 37 (89)
T PF08542_consen 18 GDFKEARKKLYELLVEGYSA 37 (89)
T ss_dssp TCHHHHHHHHHHHHHTT--H
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 35555555555555555444
No 424
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.56 E-value=2.9e+02 Score=26.11 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCcchhH--HHHHHHHHHhcCChhhHHHHHHhcCCC---ChHHHHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 010961 194 IHSHILVNGLDFDSVL--GSSLVNLYGKCGDFNSANQVLNMMKEP---DDFCLSALISGYANCGKMNDARRVFDRTTDTS 268 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (496)
+.+.+.+.|..|+... -.+.+...+..|+.+-+..+++.-..+ |...++. +...+..|+.+-+.-+++....++
T Consensus 117 iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~~ga~~n 195 (413)
T PHA02875 117 IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP-LIIAMAKGDIAICKMLLDSGANID 195 (413)
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCCCC
Confidence 3344444555443321 122334444556665555555443321 2112222 222334455555555555444433
Q ss_pred cc---hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010961 269 SV---MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA 304 (496)
Q Consensus 269 ~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 304 (496)
.. .....+...+..|+.+ +.+.+.+.|..++.
T Consensus 196 ~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 196 YFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred cCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 21 1123333334455543 34444556655553
No 425
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.30 E-value=63 Score=20.99 Aligned_cols=49 Identities=6% Similarity=-0.042 Sum_probs=27.0
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
|....++.++..+++..-.++++..+.++...| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444556666666666666666666666666665 3444455444444433
No 426
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.99 E-value=37 Score=25.89 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHHHHhcCChH---HHHHHhhhCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh
Q 010961 38 NSTLPIANRLLQMYMRCGNPT---DALLLFDEMPR-----RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KND 103 (496)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 103 (496)
++.. +.-.+.-++.++.+.+ +-+.+++.+.+ ........|.-++.+.+++++++++++.+.+ ||.
T Consensus 30 ~s~~-s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 30 VSKQ-SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred chHH-HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 4444 4445677777776544 45567777653 1233444556677888999999999888876 554
No 427
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.31 E-value=92 Score=19.98 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=18.5
Q ss_pred ccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH-----HhcCChHHHHHh
Q 010961 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFY-----CKCGFIKMDEYY 493 (496)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~ 493 (496)
..|++=+|.++++.+-.....|....+..||.+. .+.|+.+.|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3444555555555443222222334444444332 244555555443
No 428
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=41.99 E-value=1.2e+02 Score=21.14 Aligned_cols=36 Identities=11% Similarity=0.320 Sum_probs=19.5
Q ss_pred hcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCH
Q 010961 53 RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHK 88 (496)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (496)
+..+.++|..+++.+..++..+|....+++-..|..
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~ 75 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYK 75 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCh
Confidence 344455555555555555555555555555544433
No 429
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.90 E-value=2.2e+02 Score=24.36 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhhhCCCC--------------ChhhHHHHHHHHH--hcCCHHHHHHHHhhCCCCChhh
Q 010961 42 PIANRLLQMYMRCGNPTDALLLFDEMPRR--------------NCFSWNAMIEGFM--KLGHKEKSLQLFNVMPQKNDFS 105 (496)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~ 105 (496)
.+....+..|.+.-++.-|=..++++.+| |......|+...- +-+-.+++++..-...+-|-.-
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQ 210 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQ 210 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHH
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH
Q 010961 106 WNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178 (496)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 178 (496)
-..-+.+....-.+-.+..+|+-..+|.+.....++..|.+ +++++|.+++.++.+ .|..|....-+..
T Consensus 211 alNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~---lgysp~Dii~~~F 279 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWK---LGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHH---cCCCHHHHHHHHH
No 430
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=41.66 E-value=77 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=12.7
Q ss_pred ChhhHHHHHHhcCCCChHHHHHHHHHH
Q 010961 222 DFNSANQVLNMMKEPDDFCLSALISGY 248 (496)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~l~~~~ 248 (496)
+.+++.++++.+...++.+|..+..++
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 344455555555544444444444444
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.40 E-value=2e+02 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=15.3
Q ss_pred HHHhcccchhhHHHHHHHHHH
Q 010961 312 SACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~ 332 (496)
..|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 357777777777777777766
No 432
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.19 E-value=2.3e+02 Score=24.35 Aligned_cols=114 Identities=10% Similarity=-0.066 Sum_probs=69.9
Q ss_pred HHhcCChhhHHHHHHhcc--cCch-hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhCCChhhHHH
Q 010961 349 YSKRGMPSDACKLFSELK--VYDT-ILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLI-SWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~ 422 (496)
|.....++.|+..|.+.. .|++ .-|..-+-++.+..+++.+..--.+..+ ||.+ ..-.+..+......+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 445567888888777766 4554 4456667777788888777665555544 4433 33445666677788888888
Q ss_pred HHHHHHh----CCCCCCHHHHHHHHHHHhccCchhhHHHHHHHH
Q 010961 423 LFCNMNK----LDLRMDKFSLASVISACANISSLELGEQVFARV 462 (496)
Q Consensus 423 ~~~~m~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (496)
.+.+... +.++|-......|..+=-..=...+..++.++.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888743 334444556666665543333344445554444
No 433
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.13 E-value=2.5e+02 Score=24.59 Aligned_cols=171 Identities=9% Similarity=0.033 Sum_probs=99.6
Q ss_pred cCChhhHHHHHHhcCC----CCh---HHHHHHHHHHHhcCChhHHHHHHHhcCC---------CCcchHHHHHHHHHhCC
Q 010961 220 CGDFNSANQVLNMMKE----PDD---FCLSALISGYANCGKMNDARRVFDRTTD---------TSSVMWNSMISGYISNN 283 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~----~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~ 283 (496)
...+++|+.-|.++.+ ... .....++....+.+++++..+.+.++.. -+..+.|.++..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4567888888887763 222 3445677888888888888888876542 12345666666555555
Q ss_pred CHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC----c-------hHHHHHHHHH
Q 010961 284 EDTEALLLFHKMRR----N-GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI----D-------DVIVASALLD 347 (496)
Q Consensus 284 ~~~~a~~~~~~m~~----~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-------~~~~~~~l~~ 347 (496)
+.+-....|+.-.+ . +-..--.|-..|...|...+.+.+..+++.++..+--. . -..+|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55555555443322 1 11222233445666677777788888888877653111 1 1345666677
Q ss_pred HHHhcCChhhHHHHHHhcc-----cCchhhHHHHH----HHHHhcCCHHHHH
Q 010961 348 TYSKRGMPSDACKLFSELK-----VYDTILLNTMI----TVYSSCGRIEDAK 390 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~----~~~~~~~~~~~a~ 390 (496)
.|....+-.+-..+|++.. -|.+.+...+- ....+.|++++|-
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 7777777666666776654 34444333322 2234556666664
No 434
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.97 E-value=2.7e+02 Score=24.93 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHhcccchhhHH
Q 010961 301 LEDASTLASVLSACSSLGFLEHGK 324 (496)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~a~ 324 (496)
.-|+..|..+..+|.-.|+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 455666777777776666555444
No 435
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.68 E-value=1.3e+02 Score=21.19 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=32.4
Q ss_pred HhCCChhhHHHHHHHHHh----CCCCCC----HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNK----LDLRMD----KFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~----~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
.+.|++..|.+.+.+..+ .+..+. ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456788888666655543 222221 12233344556677999999999987764
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.45 E-value=3.2e+02 Score=25.66 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC------CCcchHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTD------TSSVMWNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
.+.-+...|...|+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345556666666777766666666433 1123444555555556666666666555544
No 437
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=40.36 E-value=4.4e+02 Score=27.35 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHH---HHhcCChhHHHHHHhhcCC--CCcccHHHHHHH
Q 010961 72 CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISG---FAKAGELKTARTLFNDMPR--RNAIAWNSMIHC 143 (496)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~ 143 (496)
...+..||..+.+.|++++...--.+|.+ -++..|..-+.- ....+....+..+|+.... .++..|.-.+..
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y 192 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVVNY 192 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHHHH
Confidence 34455666667777766665544444433 333444333322 2334566666666666653 344555554444
Q ss_pred HHH-------cCCHHHHHHHHHHHHHc
Q 010961 144 YVR-------NGFAREAVRLFKELNSD 163 (496)
Q Consensus 144 ~~~-------~~~~~~a~~~~~~~~~~ 163 (496)
+.. .++++....+|.+..+.
T Consensus 193 ~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 193 LVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHhccccccccccchhhhHHHHHHHhh
Confidence 433 24455555566655553
No 438
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.11 E-value=1.3e+02 Score=20.94 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
++|+.....|+..|+.+|..+++...-.=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777888888888888777766666777777777665
No 439
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.10 E-value=3.4e+02 Score=27.32 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=45.7
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCC------CChHHHHHHHHHHHhcCChh------HHHHHHHhcC-CCCcchHHHHHHH
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKE------PDDFCLSALISGYANCGKMN------DARRVFDRTT-DTSSVMWNSMISG 278 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~-~~~~~~~~~l~~~ 278 (496)
+|..+|...|++-++.++++.... .-...+|..++.+.+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 788888889999888888888764 12346777777777777643 3444444332 2455666666655
Q ss_pred HHh
Q 010961 279 YIS 281 (496)
Q Consensus 279 ~~~ 281 (496)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 440
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.12 E-value=2.7e+02 Score=27.56 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=50.5
Q ss_pred HHHHHHHHh-cCCHHHHHHHHhhCCC--CC---hhhHHHHHHHHHhcCChhHHHHHHhhcCCC-Cc--ccHHHHHHHHHH
Q 010961 76 NAMIEGFMK-LGHKEKSLQLFNVMPQ--KN---DFSWNMLISGFAKAGELKTARTLFNDMPRR-NA--IAWNSMIHCYVR 146 (496)
Q Consensus 76 ~~l~~~~~~-~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~li~~~~~ 146 (496)
..+.+.|.+ .|+..+|...+..... ++ -....++...+.|.|...+|--++...... +. .-+..+.++++.
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am 295 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM 295 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH
Confidence 344444543 3666666666555432 11 122344555566666666665555444321 11 124445555666
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHH
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGA 181 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~ 181 (496)
.+.+...+..|....+.+ .+..|....-...|++
T Consensus 296 l~~~N~S~~~ydha~k~~-p~f~q~~~q~~~~ISC 329 (886)
T KOG4507|consen 296 LGEYNHSVLCYDHALQAR-PGFEQAIKQRKHAISC 329 (886)
T ss_pred HhhhhhhhhhhhhhhccC-cchhHHHHHHHHHHHH
Confidence 666666666666555532 2344443333344443
No 441
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.84 E-value=95 Score=20.18 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 267 TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
+....++.++...++..-.++++..+.+..+.|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3445556666666666666666666666666663 34444444444443
No 442
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.59 E-value=78 Score=21.23 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=25.6
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
...|+.+.+.+++++..+.|++|.......+..+..+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34677888888888888877777766666565554443
No 443
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.45 E-value=92 Score=22.92 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
++..+...+.+-.|.++++.+.+.+..++..|....+..+...|-..+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 445555556667788888888877766676666666666666665443
No 444
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.12 E-value=93 Score=23.12 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=20.7
Q ss_pred HHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 443 ISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
+..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3333444445555556665555555555544444445555554
No 445
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.11 E-value=1.8e+02 Score=25.16 Aligned_cols=52 Identities=13% Similarity=0.006 Sum_probs=24.5
Q ss_pred HHHHHHhCCChhhHHHHHHHHHh----CC-CCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNK----LD-LRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44555566666666666665522 11 122233444444444555555444433
No 446
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=38.02 E-value=91 Score=21.68 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=15.2
Q ss_pred hcCChhHHHHHHhhcCCCCcccHHHHHHHHHH
Q 010961 115 KAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146 (496)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 146 (496)
...+.++|..+++.++.++..+|....+++-.
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 33444455555555544444444444444443
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.39 E-value=3.1e+02 Score=24.64 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=24.1
Q ss_pred hhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC
Q 010961 25 KQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
.++++.+.+.++.|.-+ ++.=+.-.+.+.=.+.+.+.+++.+..
T Consensus 263 ~EL~~~L~~~~i~Pqfy-aFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFY-AFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccch-hHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555555555555555 555444455555555566666655554
No 448
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.90 E-value=1.9e+02 Score=29.03 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCCC------CcccHHHHHHHHHHcCCHHH--HHHHHHHHHHchhccCCcCHHHHHHH
Q 010961 107 NMLISGFAKAGELKTARTLFNDMPRR------NAIAWNSMIHCYVRNGFARE--AVRLFKELNSDLVERLQCDAFILATV 178 (496)
Q Consensus 107 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~~~~~~~p~~~~~~~l 178 (496)
.+|+.+|...|++-.+..+++..... =...+|..|+...+.|.++- ..+-..+..+. ..+.-|..||..+
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~--a~ln~d~~t~all 109 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ--ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--hhcCCcchHHHHH
Confidence 37899999999999999999887642 24579999999999998642 22222333332 3466788899999
Q ss_pred HHHHHccchHHHHHHHHHHHHH
Q 010961 179 IGACADLAALEYGKQIHSHILV 200 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~ 200 (496)
+.+....-+-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8887776666666666666665
No 449
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.44 E-value=2.6e+02 Score=23.58 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=49.8
Q ss_pred HHhcCCHHHHHHHHhhCC-------CC-Ch--hhHHHHHHHHHhCCChh-------hHHHHHHHHHhCCCCC----CHHH
Q 010961 380 YSSCGRIEDAKHIFRTMP-------NK-SL--ISWNSMIVGLSQNGSPI-------EALDLFCNMNKLDLRM----DKFS 438 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~-------~~-~~--~~~~~l~~~~~~~g~~~-------~a~~~~~~m~~~~~~p----~~~~ 438 (496)
+.....++.|.+.+.-+. .+ .. ..+-.+.+.|-..|+.+ .|++.|.+..+..-.| +..+
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 344455666666554332 12 21 24445566676667633 3555555554433222 2222
Q ss_pred -HHHHHHHHhccCchhhHHHHHHHHHHcCCCch
Q 010961 439 -LASVISACANISSLELGEQVFARVTIIGLDSD 470 (496)
Q Consensus 439 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 470 (496)
.-.+.....+.|+.++|.+.|..++..+-.+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 33344446677888888888888887665544
No 450
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.08 E-value=4.2e+02 Score=25.80 Aligned_cols=61 Identities=7% Similarity=0.115 Sum_probs=36.9
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchh------hHHHHHHHHHHcCCCchHHH
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLE------LGEQVFARVTIIGLDSDQII 473 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~ 473 (496)
+.++++.|+.++.+|...|..|....-..+..++-..|.-+ .+..+++...+.|++-....
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~ 321 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRL 321 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHH
Confidence 56889999999999998887777665444444444444322 33344444455566544433
No 451
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=35.96 E-value=1.2e+02 Score=20.30 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.5
Q ss_pred ccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
..|+.+.+.++++...+.|..|.......+..+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45899999999999998888888777776777766554
No 452
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.92 E-value=2e+02 Score=22.14 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=46.7
Q ss_pred CChhhHHHHHHHHHhCCC---hhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 399 KSLISWNSMIVGLSQNGS---PIEALDLFCNMNKLDLRMD--KFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
++..+--.+.+++.+..+ ..+.+.+++...+.. +|+ .....-|.-++.+.|+++.+.++++.+.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344455556777776654 566788899888732 443 3344456667999999999999999888743
No 453
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.39 E-value=4.1e+02 Score=25.54 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=52.0
Q ss_pred cCCHHHHHHHHhhCCC--CChh----hHHHHHHHHHhC----CChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccC
Q 010961 383 CGRIEDAKHIFRTMPN--KSLI----SWNSMIVGLSQN----GSPIEALDLFCNMNKLDLRM--DKFSLASVISACANIS 450 (496)
Q Consensus 383 ~~~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g 450 (496)
.|+.++|+.++-.+.. ||+. -|..+|+.+... |..-...+.++-.++.-+-. |........--.....
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 5778888888877664 6653 456666666532 12222333333333321111 2222111111123457
Q ss_pred chhhHHHHHHHHHHcCCCchH--HHHHHHHHHHHh
Q 010961 451 SLELGEQVFARVTIIGLDSDQ--IISTSLVDFYCK 483 (496)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 483 (496)
++..|.++|+++.+.+-+..+ .-.++-+.++.+
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 899999999999875433333 334444555544
No 454
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.33 E-value=3.5e+02 Score=24.75 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 418 IEALDLFCNMNKLDLRMDK----FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 418 ~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
++++.++..+... -|+. ..|.++++.....|.++.+..+|++++..|-.|-..+-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555555555554 3443 2455666666666666666777776666666666666666666554
No 455
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.26 E-value=3.4e+02 Score=24.55 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHH
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
|..+-.++...+..+........+.-...-.-..++-+--...-+.+|+++|++..+....+|+ +..+...--
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr-------~sqq~qh~~ 260 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYR-------QSQQCQHQS 260 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHh-------hHHHHhhhc
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHH-HHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 422 DLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFA-RVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
...+.+.+++...-...=..|.-+..+.|+..+|.+.++ .|.+..+..-..+...|++++....-+.+...++
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.05 E-value=2e+02 Score=21.78 Aligned_cols=41 Identities=12% Similarity=0.354 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCcc-hhHHHHHHHHHHhcCChhhHHHHHH
Q 010961 191 GKQIHSHILVNGLDFD-SVLGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 191 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
..++|..|...|+-.. +..|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567777777776433 3355666666777788888877775
No 457
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=34.69 E-value=2.2e+02 Score=28.09 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=35.2
Q ss_pred ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIF 393 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (496)
.|+.-.|...+..+........-.....|.+.+.+.|....|-.++.+.. ...+.++-.+.+++....+++.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 45555555544443322111111122233444444444444444444333 223344445555555555555555555
Q ss_pred hhCC
Q 010961 394 RTMP 397 (496)
Q Consensus 394 ~~~~ 397 (496)
+...
T Consensus 700 ~~a~ 703 (886)
T KOG4507|consen 700 RQAL 703 (886)
T ss_pred HHHH
Confidence 5544
No 458
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=3e+02 Score=23.72 Aligned_cols=112 Identities=5% Similarity=-0.186 Sum_probs=69.8
Q ss_pred HHhcccchhhHHHHHHHHHHcCCCchH-HHHHHHHHHHHhcCChhhHHHHHHhcc--cCchh-hHHHHHHHHHhcCCHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACKVGVIDDV-IVASALLDTYSKRGMPSDACKLFSELK--VYDTI-LLNTMITVYSSCGRIED 388 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~ 388 (496)
.|.....++.|...|.+.+.. .|+. .-|+.-+.++.+..+++.+..--.+.. .||.+ ..-.+..++.....++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 466667888898877777765 4555 455667778888888888776655555 34433 23345566777888999
Q ss_pred HHHHHhhCCC--------CChhhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 389 AKHIFRTMPN--------KSLISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 389 a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
|+..+.+... +....+..|..+=-+.=...+..++.++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 9888887632 2334455555443333334444444444
No 459
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.49 E-value=1.3e+02 Score=22.16 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=5.4
Q ss_pred CCHHHHHHHHhhC
Q 010961 384 GRIEDAKHIFRTM 396 (496)
Q Consensus 384 ~~~~~a~~~~~~~ 396 (496)
+..-.|.++++.+
T Consensus 14 ~~~~sa~ei~~~l 26 (116)
T cd07153 14 DGHLTAEEIYERL 26 (116)
T ss_pred CCCCCHHHHHHHH
Confidence 3333444444444
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.44 E-value=2.4e+02 Score=22.74 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 451 SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
+.-.|.++++.+.+.+..++..|..--++.+.+.|
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344444444444443333333333333333333
No 461
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.22 E-value=1.3e+02 Score=21.57 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhh
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDE 66 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~ 66 (496)
....|.-.|.+.|+.+.|.+-|+.
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHH
Confidence 444555556666666666666654
No 462
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=33.93 E-value=67 Score=22.23 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=35.7
Q ss_pred cchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhc
Q 010961 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC 54 (496)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 54 (496)
|.|.....+++.|... +++++......+...|+++.. ....+.......
T Consensus 3 p~~~~i~~i~~~~~~~-~~~~~~~~~~~l~~~G~s~~~--Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG-DFKEARKKLYELLVEGYSASD--ILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHHT-CHHHHHHHHHHHHHTT--HHH--HHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHh
Confidence 6777788888888775 799999999999988865444 677777777776
No 463
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.67 E-value=3.1e+02 Score=23.59 Aligned_cols=59 Identities=3% Similarity=-0.086 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-ccchhhHHHHHHHHHH
Q 010961 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-LGFLEHGKQVHGHACK 332 (496)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 332 (496)
.++..+-+.|+++++...++++...+...+..--+.+-.+|-. .|....+..++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3556677888999999999999888777777766666666532 3444555555555443
No 464
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=33.60 E-value=4.3e+02 Score=25.15 Aligned_cols=52 Identities=6% Similarity=-0.004 Sum_probs=22.6
Q ss_pred HhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 010961 63 LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFA 114 (496)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 114 (496)
+.+.+..++.......++++...+..+....+..-+..+++......+.++.
T Consensus 91 L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 91 VLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3333333444444555555555544444444444443344444333334443
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.54 E-value=2.2e+02 Score=24.66 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCC---------CChHHHHHHHHHHHhcCChhHHHHHH
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKE---------PDDFCLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
.+...|.+.|++++|.++|+.+.. ....+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455556666666666666665531 22233444555566666666555443
No 466
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.53 E-value=3.9e+02 Score=28.02 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHhhCCC----------CChhhHHHHHHHHH---------------hCCChhhHHHHHHHHHhCCCCCC
Q 010961 381 SSCGRIEDAKHIFRTMPN----------KSLISWNSMIVGLS---------------QNGSPIEALDLFCNMNKLDLRMD 435 (496)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~----------~~~~~~~~l~~~~~---------------~~g~~~~a~~~~~~m~~~~~~p~ 435 (496)
...|++.+|.+.|+.+.- .+..-...++..+. ..+..+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 357889999998888652 12222223333221 12334445444445555667775
Q ss_pred HH--HHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHH
Q 010961 436 KF--SLASVISACANISSLELGEQVFARVTIIGLDSDQII 473 (496)
Q Consensus 436 ~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 473 (496)
.. +..+.+..+.+.+++..|..+-.++.+.+..|+..-
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 43 567788889999999999999999988887666543
No 467
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.36 E-value=3.7e+02 Score=25.01 Aligned_cols=120 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 010961 138 NSMIHCYVRNGF---AREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214 (496)
Q Consensus 138 ~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 214 (496)
..+++.+.+.++ +-+|+-+++..... -+.+...-..+++.|...|-.+.|...|..+.-..+..|.-.| .+.
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~----s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h-~~~ 258 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKK----SPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH-LIL 258 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH-HHH
Q ss_pred HHHHhcCChhhHH-HHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHH
Q 010961 215 NLYGKCGDFNSAN-QVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFD 262 (496)
Q Consensus 215 ~~~~~~~~~~~a~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (496)
.-+...|....+. ..++.... .+.......+....+.|.+.+..++.+
T Consensus 259 ~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 259 DRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 468
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.34 E-value=3.6e+02 Score=24.28 Aligned_cols=128 Identities=12% Similarity=0.055 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHcCC----CchHHHHHHHHHHHHhcCChhhHHHHHHhcc-cCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 320 LEHGKQVHGHACKVGV----IDDVIVASALLDTYSKRGMPSDACKLFSELK-VYDTILLNTMITVYSSCGRIEDAKHIFR 394 (496)
Q Consensus 320 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (496)
.+.|.+.|......+. ..++.....++....+.|+.+.-..+++... .+++..-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4566667777666421 3345555566666666666555555555444 3455566777777777777777666666
Q ss_pred hCCCCC---hhhHHHHHHHHHhCCCh--hhHHHHHHH----HHhCCCCCCHHHHHHHHHHHhc
Q 010961 395 TMPNKS---LISWNSMIVGLSQNGSP--IEALDLFCN----MNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 395 ~~~~~~---~~~~~~l~~~~~~~g~~--~~a~~~~~~----m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
....++ ......++.++...+.. +.+.+.+.. +.+. +.++......++..+..
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCT
T ss_pred HHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhc
Confidence 655432 11223344444423332 445554443 3322 33333345555555443
No 469
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.31 E-value=5e+02 Score=25.91 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHchhccCCcCHHHHH-HHHHH-HHccchHHHHHHHHHHHHH-------cCCCcchhHHHHHHHHHHhc
Q 010961 150 AREAVRLFKELNSDLVERLQCDAFILA-TVIGA-CADLAALEYGKQIHSHILV-------NGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~p~~~~~~-~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 220 (496)
...|.++++..... |..-...... ....+ ....++.+.|..+++.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~---g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL---GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhh---cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 45677777777663 2111111111 11122 4456788888888888766 44 233455666666664
Q ss_pred C-----ChhhHHHHHHhcCC
Q 010961 221 G-----DFNSANQVLNMMKE 235 (496)
Q Consensus 221 ~-----~~~~a~~~~~~~~~ 235 (496)
. +.+.|..++.+..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred CCCccccHHHHHHHHHHHHh
Confidence 3 44556766666543
No 470
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.29 E-value=4e+02 Score=24.77 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=39.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCchhhHHHHHHHHHH
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA-NISSLELGEQVFARVTI 464 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 464 (496)
.+..+.+.|-+..|+++.+-+......-|+.....+|+.|+ +.++++-..++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35667778888888888888888753336666666666654 66777777777765443
No 471
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.45 E-value=4.8e+02 Score=25.41 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
.++.+ ...++++.|+.++.+|...|..|....-..+..++
T Consensus 249 ~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~ 288 (472)
T PRK14962 249 DYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLV 288 (472)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33333 46689999999999999998888765444444333
No 472
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.18 E-value=4.4e+02 Score=24.86 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=34.7
Q ss_pred CCcchHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 010961 267 TSSVMWNSMISGYIS---NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318 (496)
Q Consensus 267 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 318 (496)
++...+-.+++++.+ -.+++.|+-++-+|.+.|-.|-...-..++-++..-|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 344455556777755 3678999999999999987776655555555544433
No 473
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.69 E-value=4.6e+02 Score=24.94 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=30.4
Q ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010961 272 WNSMISGYIS---NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS 316 (496)
Q Consensus 272 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 316 (496)
+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3344444444 47899999999999999988876555555544433
No 474
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.63 E-value=3.8e+02 Score=23.96 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 107 NMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 107 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
..++....+.+++....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334455555555555555555553 233344556677788888888888877766
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.55 E-value=4e+02 Score=24.21 Aligned_cols=173 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
++.+....++..+.+.+..| +-...+..+.++--..+++.|.+.| ..++++-.+..+...
T Consensus 36 ~~~~~~e~l~~~Ird~~Map-------~Ye~lce~~~i~~D~~~l~~m~~~n-------------eeki~eld~~iedae 95 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP-------LYEYLCESLVIKLDQDLLNSMKKAN-------------EEKIKELDEKIEDAE 95 (393)
T ss_pred cCHHHHHHHHHHHHhcccch-------HHHHHHhhcceeccHHHHHHHHHhh-------------HHHHHHHHHHHHHHH
Q ss_pred CCC-----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHH-HhcccchhhHHHHHHHHHHcCC
Q 010961 266 DTS-----SVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLEDASTLASVLSA-CSSLGFLEHGKQVHGHACKVGV 335 (496)
Q Consensus 266 ~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~ 335 (496)
+.. ...+......|++.|+-+.|++.+.+-.+. |.+.|...+..-+.. |....-+.+-.+..+.+.+.|.
T Consensus 96 enlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 96 ENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Q ss_pred CchHHHHHHHHHHHHh--cCChhhHHHHHHhcc----cCchhhHHHHHH
Q 010961 336 IDDVIVASALLDTYSK--RGMPSDACKLFSELK----VYDTILLNTMIT 378 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~----~~~~~~~~~l~~ 378 (496)
..+..---..-++... ..++.+|-.+|-+.. .....+|..++.
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHH
No 476
>PRK12356 glutaminase; Reviewed
Probab=31.52 E-value=3.4e+02 Score=24.57 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=8.2
Q ss_pred CCCCCHHHHHHHH
Q 010961 299 GVLEDASTLASVL 311 (496)
Q Consensus 299 g~~~~~~~~~~l~ 311 (496)
|..|+...|+.+.
T Consensus 93 G~EPSG~~FNsi~ 105 (319)
T PRK12356 93 GADPTGLPFNSVI 105 (319)
T ss_pred CCCCCCCCcchHH
Confidence 5666666666655
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.35 E-value=2.5e+02 Score=21.85 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhc-ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 294 KMRRNGVLEDASTLASVLSACSS-LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 294 ~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345667766654332 3334433 345678888888888877666666655556666666643
No 478
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.93 E-value=71 Score=30.25 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=53.0
Q ss_pred HHhcCCHHHHHHHHhhCCC--CChhh-HHHHHHHHHhcCChhHHHHHHhhcCCCC---cccHHHHHHHHHHcCCHHHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ--KNDFS-WNMLISGFAKAGELKTARTLFNDMPRRN---AIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~ 155 (496)
+...+.++.|..++.++.+ ||-.. |..-..++.+.+++..|+.=+....+-+ ...|-.-..++.+.+.+.+|+.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 3445566666666666655 33222 2222345556666666665555555433 1123333344455566677777
Q ss_pred HHHHHHHchhccCCcCHHHHHHHHHHHH
Q 010961 156 LFKELNSDLVERLQCDAFILATVIGACA 183 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 183 (496)
.|+.... +.|+..-+...+.-|-
T Consensus 94 ~l~~~~~-----l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 94 DLEKVKK-----LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHhhh-----cCcCcHHHHHHHHHHH
Confidence 7777766 6777766666665553
No 479
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.39 E-value=2.2e+02 Score=20.86 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHH
Q 010961 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCL 241 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (496)
..++|..|.+.+...+-. ...+--+-+..+.+.|++++|+..=.....||...|
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~ 74 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPW 74 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHH
Confidence 345666666666655432 222222333445556666666332222333554443
No 480
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=30.13 E-value=1.8e+02 Score=19.71 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHHccc
Q 010961 171 DAFILATVIGACADLA 186 (496)
Q Consensus 171 ~~~~~~~ll~~~~~~~ 186 (496)
+..+-...+.++.+.|
T Consensus 44 ~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 44 DPMVRRAAARALGRIG 59 (88)
T ss_dssp SHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333334444444444
No 481
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.85 E-value=6.6e+02 Score=27.52 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (496)
.+..+|...|..-+|+..|.+... |+.-.......+....-...+.......-.... -..-|...++.+-
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S----g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t------~lhYYlkv~rlle 994 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS----GFGEGNALRKLVYFLLPKRFSVADGKTPSEELT------ALHYYLKVVRLLE 994 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh----ccccHHHHHHHHHHhcCCCCchhcCCCCCchHH------HHHHHHHHHHHHH
Q ss_pred hcCChhhHHHHHHhcCC-------CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHH
Q 010961 219 KCGDFNSANQVLNMMKE-------PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (496)
..+-.+.+.++-....+ .-..+++.+.+.....|.+ ..+|.++++.--...+-+--.++
T Consensus 995 ~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~--------------~qAy~ai~~npdserrrdcLRql 1060 (1480)
T KOG4521|consen 995 EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHW--------------FQAYKAILRNPDSERRRDCLRQL 1060 (1480)
T ss_pred HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhH--------------HHHHHHHHcCCcHHHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHH-HHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQ-VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 292 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
.--|.+.|.-+...+ +--.|..++... +++...+.........|+.|...+...+++.+|-.+.-+
T Consensus 1061 vivLfecg~l~~L~~-------fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1061 VIVLFECGELEALAT-------FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHHHHhccchHHHhh-------CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.58 E-value=1.2e+02 Score=22.47 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=31.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4556666666688899999999988877777766555666655553
No 483
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.34 E-value=2.3e+02 Score=20.67 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCh--hhHHHHHHHHHhCC--ChhhHHHHHHHHHhCC
Q 010961 374 NTMITVYSSCGRIEDAKHIFRTMPNKSL--ISWNSMIVGLSQNG--SPIEALDLFCNMNKLD 431 (496)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~ 431 (496)
..++..|...+++++|...+.++.-|+. .....++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 4567778888888888888888776532 22333444444332 2334556666666554
No 484
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=4.1e+02 Score=23.60 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=18.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFI 174 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~ 174 (496)
+.+-..+.+++++|+..+.++.. .|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~---kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILG---KGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhc---CCCChhhhh
Confidence 44455566666666666666666 455555443
No 485
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=29.25 E-value=2.1e+02 Score=23.31 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC-----------chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 419 EALDLFCNMNKLDLRMDK-FSLASVISACANIS-----------SLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (496)
+|+.-|++... +.|+. .++..+..++...+ .+++|...|+...+ .+|+..+|+.-++...+
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 34444444444 35543 45555555554332 24555566665555 56888888877776643
No 486
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.10 E-value=6.6e+02 Score=25.96 Aligned_cols=172 Identities=13% Similarity=0.093 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC-CC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTD-TS----------SVMWNSMISGYISNNEDTEALLLFHKMRRN--GVLEDAST 306 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~ 306 (496)
+...++-.|....+++...++.+.+.. || ...|...++--.+.|+-++|+...-.|.+. .+.||...
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 344445555555555555555554443 21 123444444445667888888877666654 24566432
Q ss_pred -----HHHHH--HHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-ChhhHHHHHHhcccCchhhHHHHHH
Q 010961 307 -----LASVL--SACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-MPSDACKLFSELKVYDTILLNTMIT 378 (496)
Q Consensus 307 -----~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~ 378 (496)
|.-+. +.|...+..+.|.+.|++..+. .|+...--.+...+...| .++...++-. +--.|-.
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~Fens~Elq~--------IgmkLn~ 352 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEHFENSLELQQ--------IGMKLNS 352 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhhccchHHHHH--------HHHHHHH
Confidence 22211 2344566677778888776653 344333222222222223 2222222211 0111223
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 379 VYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
.+++.|.++.-...|+-. ....+-.-.+++.+|.+.-+.|.+.
T Consensus 353 LlgrKG~leklq~YWdV~---------~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVA---------TYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HhhccchHHHHHHHHhHH---------HhhhhhhhccCHHHHHHHHHHHhcc
Confidence 345566665555544321 1223333456777777777777765
No 487
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.79 E-value=3.9e+02 Score=23.19 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=48.7
Q ss_pred HHHHhcCChhHHHHHHhhcC----------CCCcc-----------cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCC
Q 010961 111 SGFAKAGELKTARTLFNDMP----------RRNAI-----------AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ 169 (496)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~----------~~~~~-----------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 169 (496)
+-+.+.|++.+|..-+.+.. +|... .+-..-.++...|++-++++.-.+.... .+
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~----~~ 261 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH----HP 261 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc----CC
Confidence 44566777777776665542 23222 2333344555667777777766666652 33
Q ss_pred cCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 170 CDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 170 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
-+...|..-.++.+..-+..+|..-|...++..
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344555555555555555566666666555543
No 488
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.63 E-value=4.8e+02 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=11.6
Q ss_pred HhcCCHHHHHHHHhhCCC
Q 010961 83 MKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~ 100 (496)
...+++++|+-+|+...-
T Consensus 194 iglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICVT 211 (422)
T ss_pred eccccHHHHHHHHHHHHh
Confidence 345677777777766654
No 489
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.57 E-value=1.9e+02 Score=19.61 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCchhhHH
Q 010961 380 YSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF---SLASVISACANISSLELGE 456 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~ 456 (496)
.++.|+++-...+++.-.+.+. -+..+...+..|+. ++++.+.+.|..|+.. .++.+..+. ..|+.
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~---- 72 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYAA-ENGNL---- 72 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHHH-HTTHH----
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHHH-HcCCH----
Confidence 3445555555555553333222 11133344455553 4445555565555432 233333332 33443
Q ss_pred HHHHHHHHcCCCch
Q 010961 457 QVFARVTIIGLDSD 470 (496)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (496)
++++.+.+.|..++
T Consensus 73 ~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 73 EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHTTT-TT
T ss_pred HHHHHHHHcCCCCC
Confidence 34455555565554
No 490
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.52 E-value=5e+02 Score=24.37 Aligned_cols=57 Identities=5% Similarity=-0.042 Sum_probs=39.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--cccchhhHHHHHHHHHHc
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLEDAS--TLASVLSACS--SLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 333 (496)
...+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555888999999999998887 555554 4444555543 455677888888776654
No 491
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.03 E-value=4e+02 Score=29.27 Aligned_cols=147 Identities=13% Similarity=0.012 Sum_probs=77.2
Q ss_pred HHhCCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHH-------HcCCCchHHHHHHH
Q 010961 279 YISNNEDTEALL------LFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC-------KVGVIDDVIVASAL 345 (496)
Q Consensus 279 ~~~~~~~~~a~~------~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 345 (496)
....|.+.++.+ ++...-..-.++....|..+...+.+.|+.++|...-.... ......+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555555555 44432222224445566677777778888888776654332 11222234445555
Q ss_pred HHHHHhcCChhhHHHHHHhcc-----------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhh
Q 010961 346 LDTYSKRGMPSDACKLFSELK-----------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-----------KSLIS 403 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~ 403 (496)
.......+....|...+.+.. ++...+++.+-..+...++++.|.+.++.+.. ++..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 555555666666666655543 12222333333334444666666666665542 23445
Q ss_pred HHHHHHHHHhCCChhhHHHHHH
Q 010961 404 WNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
+..+.+.+...+++..|+...+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 6666666666666666554433
No 492
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.93 E-value=4.5e+02 Score=23.67 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 325 QVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
++|+.+.+.++.|.-..+.-+.-.+.+.=.+..++.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555555555555555555555666665554
No 493
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=27.85 E-value=1.6e+02 Score=19.67 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=10.8
Q ss_pred hHHHHHHhhhCCCCChhhHHHHHHHH
Q 010961 57 PTDALLLFDEMPRRNCFSWNAMIEGF 82 (496)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~l~~~~ 82 (496)
.+++.++++.+.+++..++..+..++
T Consensus 43 ~~k~~~Lld~l~~kg~~af~~F~~~L 68 (80)
T cd01671 43 QDKARKLLDILPRKGPKAFQSFLQAL 68 (80)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 33444444444444444444444443
No 494
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.83 E-value=8e+02 Score=26.54 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=9.2
Q ss_pred HHHHHccchHHHHHHHH
Q 010961 179 IGACADLAALEYGKQIH 195 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~ 195 (496)
++.+...+++.+|..+.
T Consensus 701 ir~~Ld~~~Y~~Af~~~ 717 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELC 717 (928)
T ss_pred HHHHHhhccHHHHHHHH
Confidence 34445566666665443
No 495
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=27.42 E-value=1.5e+02 Score=20.52 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHH
Q 010961 103 DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVR 146 (496)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 146 (496)
+.+..-.-...+...+.++|..+++.++ .++.+|..+++++-.
T Consensus 30 ILt~~d~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~ 72 (84)
T cd08810 30 ILTRDDCEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRR 72 (84)
T ss_pred CCCHHHHHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHH
Confidence 3333333333344445555555555555 555555555554443
No 496
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.30 E-value=4.6e+02 Score=23.55 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=43.6
Q ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-----hhhHHHHHHHHHHcCCC
Q 010961 271 MWNSMISGYIS---NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF-----LEHGKQVHGHACKVGVI 336 (496)
Q Consensus 271 ~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 336 (496)
.+-.+++++.+ -.+++.|+-++.+|.+.|-.|....-..++-++...|. ...|...++.....|.+
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 33345666654 47889999999999999988877777777766655552 33444445555555543
No 497
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.85 E-value=98 Score=15.65 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=6.9
Q ss_pred chhhHHHHHHHHHH
Q 010961 451 SLELGEQVFARVTI 464 (496)
Q Consensus 451 ~~~~a~~~~~~~~~ 464 (496)
+.+.+..+++.+..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555555443
No 498
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.43 E-value=6.7e+02 Score=25.16 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChhHHHHHHhhc
Q 010961 108 MLISGFAKAGELKTARTLFNDM 129 (496)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~ 129 (496)
..+..+.-.|.++.|.++++..
T Consensus 153 ~~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 153 DYVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHTT-HHHHHHHH-TT
T ss_pred HHHHHHHHcCCHHHHHHHHHhc
Confidence 3555555666677776666443
No 499
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=25.83 E-value=1.3e+02 Score=16.69 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCChHHHHHh
Q 010961 474 STSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~ 493 (496)
+-.+.-.+...|+.++|.++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33455566677777777776
No 500
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=6.4e+02 Score=24.48 Aligned_cols=402 Identities=12% Similarity=0.055 Sum_probs=193.9
Q ss_pred HHHHHHhcC--ChHHHHHHhhhCCC---CCh---hhHHHHHHH-HHhcCCHHHHHHHHhh-------CCCC-C--hhhHH
Q 010961 47 LLQMYMRCG--NPTDALLLFDEMPR---RNC---FSWNAMIEG-FMKLGHKEKSLQLFNV-------MPQK-N--DFSWN 107 (496)
Q Consensus 47 l~~~~~~~~--~~~~A~~~~~~~~~---~~~---~~~~~l~~~-~~~~~~~~~a~~~~~~-------~~~~-~--~~~~~ 107 (496)
+...+...| +...++++++.+-. |+. .+.-.+... +.-..+++.|..-+++ +..- | -.++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 344454555 45566666665433 221 222222222 2234455555555544 3331 2 23566
Q ss_pred HHHHHHHhcC-ChhHHHHHHhhcCC--CCcccHH-----HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHH
Q 010961 108 MLISGFAKAG-ELKTARTLFNDMPR--RNAIAWN-----SMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI 179 (496)
Q Consensus 108 ~l~~~~~~~~-~~~~a~~~~~~~~~--~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll 179 (496)
.|...+.... .+..+..++++..+ .+...|. -|+..+.-..++..|.+++.---. .-.|-..+|..++
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~----sAd~~~~~ylr~~ 168 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAE----SADHICFPYLRML 168 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccc----ccchhhhHHHHHH
Confidence 7777777666 78888888887764 3333443 355666777888889888543322 2334444554444
Q ss_pred HHHH------ccchH---HHHHHHHHHHHHcCCCcchhH-------H-HHHHHHHHhcCChhhHHHHHHhcCC------C
Q 010961 180 GACA------DLAAL---EYGKQIHSHILVNGLDFDSVL-------G-SSLVNLYGKCGDFNSANQVLNMMKE------P 236 (496)
Q Consensus 180 ~~~~------~~~~~---~~a~~~~~~~~~~~~~~~~~~-------~-~~l~~~~~~~~~~~~a~~~~~~~~~------~ 236 (496)
..++ ...+. ..+.....++.+. ..+|..- | +.=+..|...|+...+...++++.+ +
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 3322 12233 3333333444432 3333321 1 1112333445666666655555432 0
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHhcCCC--CcchH-----HHHHHHHHhC--CCHHHHHHHHHHHHHCC-CCCCHHH
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDRTTDT--SSVMW-----NSMISGYISN--NEDTEALLLFHKMRRNG-VLEDAST 306 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-----~~l~~~~~~~--~~~~~a~~~~~~m~~~g-~~~~~~~ 306 (496)
....+..-+ -.+....+|.-+.+. ..-.| ..+..+|.+. +-.|+++...++..+.. ..|-...
T Consensus 248 ~~~~h~e~i-------lgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm 320 (629)
T KOG2300|consen 248 SSRGHDEKI-------LGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSM 320 (629)
T ss_pred CCCCccccc-------cCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 000000000 000000111111110 01111 1112222211 12344444444443332 2221111
Q ss_pred H-----HHHHHHHhcccchhhHHHHHHHHHHcC-CCchHH-------HHHHHHHH-HHhcCChhhHHHHHHhcc----cC
Q 010961 307 L-----ASVLSACSSLGFLEHGKQVHGHACKVG-VIDDVI-------VASALLDT-YSKRGMPSDACKLFSELK----VY 368 (496)
Q Consensus 307 ~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-------~~~~l~~~-~~~~~~~~~a~~~~~~~~----~~ 368 (496)
+ ..++-+-.-.|+..+|++-+.+|.+.- -.|.+. ....++.. ++..|.++.|..-|.... ..
T Consensus 321 ~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~ 400 (629)
T KOG2300|consen 321 FKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI 400 (629)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH
Confidence 1 111112234689999999888887632 123311 11223333 345678888888777665 22
Q ss_pred chh--hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHH--------HHHH--HHhCCChhhHHHHHHHHHhCCCCCC-
Q 010961 369 DTI--LLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNS--------MIVG--LSQNGSPIEALDLFCNMNKLDLRMD- 435 (496)
Q Consensus 369 ~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------l~~~--~~~~g~~~~a~~~~~~m~~~~~~p~- 435 (496)
|.. .-..+...|.+.|+.+.-.++++.+..++..++.. ++.+ ....+++.+|...+.+-.+..-..|
T Consensus 401 dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 401 DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 222 22345667889999999999999888765443322 1222 2367899999999888665321111
Q ss_pred ----HHHHHHHHHHHhccCchhhHHHHHH
Q 010961 436 ----KFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 436 ----~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
.-....|-..+...|+..++.+.+.
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 2223334445667788888888777
Done!