Query 010961
Match_columns 496
No_of_seqs 579 out of 2392
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 17:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.4E-41 8.2E-46 334.4 39.1 445 43-495 86-574 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-40 9E-45 327.0 35.1 468 3-482 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-27 1.2E-31 220.0 38.7 365 113-486 9-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.1E-29 3.8E-34 240.4 19.5 189 270-485 27-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-27 1.8E-31 218.7 37.1 365 48-450 6-387 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.1E-28 3.8E-33 233.6 20.7 188 135-352 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.5E-24 5.3E-29 210.0 29.2 244 220-466 202-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.3E-24 1.1E-28 207.7 27.6 421 6-436 7-482 (514)
9 3fp2_A TPR repeat-containing p 99.9 7.5E-23 2.6E-27 199.3 31.0 414 43-466 27-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 3.8E-22 1.3E-26 189.8 34.2 359 102-492 25-446 (450)
11 3fp2_A TPR repeat-containing p 99.9 4E-22 1.4E-26 194.2 33.7 416 5-430 25-491 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 9.3E-22 3.2E-26 187.1 30.9 330 121-478 10-370 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.6E-23 160.5 32.4 321 135-483 4-352 (359)
14 1xi4_A Clathrin heavy chain; a 99.9 6.9E-17 2.4E-21 162.5 46.1 379 4-422 984-1376(1630)
15 1b89_A Protein (clathrin heavy 99.8 1.6E-19 5.6E-24 162.9 21.7 236 53-315 15-252 (449)
16 3ieg_A DNAJ homolog subfamily 99.8 2E-18 7E-23 158.6 29.8 88 277-366 242-333 (359)
17 1b89_A Protein (clathrin heavy 99.8 2.5E-19 8.5E-24 161.7 20.4 238 84-350 15-252 (449)
18 2xm6_A Protein corresponding t 99.8 8.1E-17 2.8E-21 154.4 37.4 344 43-431 41-433 (490)
19 2xm6_A Protein corresponding t 99.8 6.4E-17 2.2E-21 155.2 36.6 348 116-481 56-450 (490)
20 3hym_B Cell division cycle pro 99.8 4.6E-18 1.6E-22 154.3 25.5 284 168-487 18-321 (330)
21 3hym_B Cell division cycle pro 99.8 2.8E-17 9.6E-22 149.1 30.5 273 133-411 21-314 (330)
22 2ooe_A Cleavage stimulation fa 99.8 1.7E-16 5.7E-21 153.8 37.6 408 28-465 2-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 2.7E-18 9.2E-23 158.5 21.4 274 220-495 38-354 (368)
24 2ooe_A Cleavage stimulation fa 99.8 5.4E-16 1.9E-20 150.2 38.0 402 71-495 12-487 (530)
25 1xi4_A Clathrin heavy chain; a 99.8 5.5E-15 1.9E-19 149.0 45.5 375 75-494 988-1378(1630)
26 1fch_A Peroxisomal targeting s 99.8 1.2E-17 4.1E-22 154.2 24.3 94 136-234 66-159 (368)
27 4eqf_A PEX5-related protein; a 99.8 3.5E-18 1.2E-22 157.6 18.5 255 239-495 66-351 (365)
28 4eqf_A PEX5-related protein; a 99.8 5.8E-17 2E-21 149.4 22.1 227 133-366 64-308 (365)
29 3cv0_A Peroxisome targeting si 99.8 5.4E-17 1.8E-21 147.1 20.8 260 206-496 20-311 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 5E-16 1.7E-20 137.4 25.5 266 216-493 8-287 (291)
31 3cv0_A Peroxisome targeting si 99.7 5.8E-16 2E-20 140.2 23.2 225 135-366 22-267 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.7 4.9E-18 1.7E-22 165.6 9.5 123 371-493 128-258 (1134)
33 3mkr_A Coatomer subunit epsilo 99.7 8.7E-16 3E-20 135.8 22.5 252 141-436 6-268 (291)
34 4g1t_A Interferon-induced prot 99.7 2.6E-15 9E-20 143.5 24.9 368 43-438 53-468 (472)
35 4g1t_A Interferon-induced prot 99.7 1.7E-14 6E-19 137.7 29.6 318 136-466 96-460 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.9E-22 162.4 7.1 147 238-384 127-286 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 9.7E-15 3.3E-19 137.8 25.6 334 81-431 12-388 (452)
38 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-14 4E-19 137.3 20.4 342 10-398 8-386 (452)
39 3uq3_A Heat shock protein STI1 99.6 1.7E-14 5.9E-19 125.6 18.0 218 238-465 5-236 (258)
40 2pl2_A Hypothetical conserved 99.6 1.5E-14 5.3E-19 122.1 16.9 203 268-495 4-209 (217)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5.2E-19 127.4 16.0 187 73-266 44-243 (275)
42 3uq3_A Heat shock protein STI1 99.6 7E-14 2.4E-18 121.7 19.2 214 207-430 5-236 (258)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-15 6.2E-20 133.3 7.6 244 13-261 13-269 (275)
44 3u4t_A TPR repeat-containing p 99.6 5.9E-13 2E-17 116.9 23.7 222 272-495 6-245 (272)
45 2pl2_A Hypothetical conserved 99.6 2.2E-13 7.4E-18 115.0 18.4 195 236-462 3-211 (217)
46 3u4t_A TPR repeat-containing p 99.6 7.4E-13 2.5E-17 116.3 22.3 239 241-481 6-265 (272)
47 1ouv_A Conserved hypothetical 99.6 3.4E-12 1.2E-16 112.1 26.2 218 241-467 9-253 (273)
48 3sf4_A G-protein-signaling mod 99.5 5E-13 1.7E-17 124.8 21.5 116 372-487 229-363 (406)
49 1ouv_A Conserved hypothetical 99.5 3.5E-12 1.2E-16 112.0 25.5 216 268-495 5-246 (273)
50 2q7f_A YRRB protein; TPR, prot 99.5 3.7E-13 1.3E-17 116.0 17.3 195 269-466 23-223 (243)
51 2ho1_A Type 4 fimbrial biogene 99.5 2E-12 7E-17 112.0 21.7 192 272-466 40-239 (252)
52 2ho1_A Type 4 fimbrial biogene 99.5 1.9E-12 6.6E-17 112.2 21.1 201 207-438 37-244 (252)
53 2h6f_A Protein farnesyltransfe 99.5 4.3E-12 1.5E-16 116.0 23.9 239 238-482 97-364 (382)
54 4e6h_A MRNA 3'-END-processing 99.5 2.1E-10 7.3E-15 111.9 36.8 419 21-446 48-584 (679)
55 2h6f_A Protein farnesyltransfe 99.5 1.8E-12 6E-17 118.5 20.8 222 269-495 97-342 (382)
56 3sf4_A G-protein-signaling mod 99.5 4.5E-13 1.5E-17 125.1 17.4 232 43-296 11-294 (406)
57 2q7f_A YRRB protein; TPR, prot 99.5 3.2E-13 1.1E-17 116.4 15.0 191 5-201 23-222 (243)
58 3ulq_A Response regulator aspa 99.5 6.9E-12 2.3E-16 116.1 24.4 222 144-366 22-291 (383)
59 2vq2_A PILW, putative fimbrial 99.5 3.4E-12 1.2E-16 108.4 20.7 195 269-466 8-212 (225)
60 2vq2_A PILW, putative fimbrial 99.5 3.9E-12 1.3E-16 108.0 20.8 200 237-439 7-218 (225)
61 4a1s_A PINS, partner of inscut 99.5 2.3E-13 7.8E-18 127.4 14.1 260 207-466 48-373 (411)
62 4a1s_A PINS, partner of inscut 99.5 1.2E-12 4.2E-17 122.4 16.9 59 372-430 305-372 (411)
63 3ro2_A PINS homolog, G-protein 99.5 2E-12 7E-17 117.1 17.1 205 135-366 84-330 (338)
64 3ro2_A PINS homolog, G-protein 99.5 4.6E-12 1.6E-16 114.8 19.2 93 373-465 226-332 (338)
65 3ulq_A Response regulator aspa 99.4 7.1E-12 2.4E-16 116.0 19.6 221 181-429 112-367 (383)
66 4e6h_A MRNA 3'-END-processing 99.4 1.1E-09 3.7E-14 107.0 33.9 419 58-481 49-584 (679)
67 3q15_A PSP28, response regulat 99.4 1.2E-10 4E-15 107.5 24.2 298 139-464 15-364 (378)
68 3vtx_A MAMA; tetratricopeptide 99.4 3.8E-11 1.3E-15 98.4 18.7 163 269-465 5-170 (184)
69 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5.2E-16 116.7 18.4 201 254-458 84-314 (474)
70 2ond_A Cleavage stimulation fa 99.4 1.6E-10 5.3E-15 103.3 23.5 227 239-466 9-271 (308)
71 3vtx_A MAMA; tetratricopeptide 99.4 2.6E-11 9E-16 99.4 16.5 156 338-495 4-165 (184)
72 2ond_A Cleavage stimulation fa 99.4 2.9E-10 9.8E-15 101.6 24.6 222 206-430 7-270 (308)
73 4abn_A Tetratricopeptide repea 99.3 4.3E-11 1.5E-15 113.6 18.5 190 206-396 101-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-11 1.1E-15 108.0 16.0 246 175-464 30-306 (311)
75 3nf1_A KLC 1, kinesin light ch 99.3 6.9E-11 2.3E-15 105.8 17.7 226 269-495 27-302 (311)
76 3q15_A PSP28, response regulat 99.3 1.1E-09 3.9E-14 100.9 25.9 167 140-332 107-289 (378)
77 1hz4_A MALT regulatory protein 99.3 4.4E-09 1.5E-13 96.8 27.7 154 310-463 141-320 (373)
78 3as5_A MAMA; tetratricopeptide 99.2 2.9E-10 1E-14 93.0 16.0 157 306-464 10-172 (186)
79 1hz4_A MALT regulatory protein 99.2 3.3E-09 1.1E-13 97.7 24.7 196 137-332 96-321 (373)
80 1qqe_A Vesicular transport pro 99.2 8.6E-10 2.9E-14 97.6 19.3 196 22-235 2-227 (292)
81 3as5_A MAMA; tetratricopeptide 99.2 8.8E-10 3E-14 90.1 17.7 120 43-162 10-138 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 3.6E-10 1.2E-14 111.7 16.2 160 303-464 8-173 (723)
83 4i17_A Hypothetical protein; T 99.2 2.7E-09 9.1E-14 90.7 19.4 201 268-478 6-221 (228)
84 4i17_A Hypothetical protein; T 99.2 1.9E-09 6.4E-14 91.6 18.2 184 302-495 5-204 (228)
85 1qqe_A Vesicular transport pro 99.2 3.6E-09 1.2E-13 93.5 20.4 151 216-366 46-226 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 7.4E-10 2.5E-14 97.4 15.9 193 303-495 42-276 (283)
87 4gyw_A UDP-N-acetylglucosamine 99.1 1.1E-09 3.7E-14 108.3 17.0 160 269-430 9-174 (723)
88 3mv2_B Coatomer subunit epsilo 99.1 3.2E-08 1.1E-12 85.8 20.4 155 308-464 104-281 (310)
89 3qky_A Outer membrane assembly 99.0 2.3E-08 7.9E-13 86.8 19.2 206 271-493 17-254 (261)
90 3edt_B KLC 2, kinesin light ch 99.0 6.4E-09 2.2E-13 91.3 15.4 201 172-396 43-278 (283)
91 3mv2_B Coatomer subunit epsilo 99.0 1.7E-07 6E-12 81.2 22.1 175 257-437 85-287 (310)
92 2r5s_A Uncharacterized protein 99.0 2.2E-08 7.5E-13 81.0 15.5 153 342-495 9-168 (176)
93 2uy1_A Cleavage stimulation fa 99.0 3.8E-07 1.3E-11 86.5 25.9 118 372-495 288-408 (493)
94 2uy1_A Cleavage stimulation fa 98.9 1.5E-07 5.3E-12 89.1 22.4 345 55-429 28-412 (493)
95 3qou_A Protein YBBN; thioredox 98.9 5.3E-08 1.8E-12 85.7 18.1 159 336-495 114-279 (287)
96 2fo7_A Synthetic consensus TPR 98.9 2.3E-08 7.9E-13 76.6 13.8 65 400-465 68-132 (136)
97 3urz_A Uncharacterized protein 98.9 1E-08 3.4E-13 85.6 12.0 164 6-176 5-194 (208)
98 3qky_A Outer membrane assembly 98.9 2.9E-08 9.8E-13 86.2 15.1 159 43-203 17-226 (261)
99 2r5s_A Uncharacterized protein 98.9 2.4E-08 8.2E-13 80.8 13.7 149 44-197 9-169 (176)
100 2fo7_A Synthetic consensus TPR 98.9 1.8E-08 6.3E-13 77.1 12.5 121 373-495 4-127 (136)
101 3urz_A Uncharacterized protein 98.9 7.9E-08 2.7E-12 80.1 16.7 88 276-366 11-115 (208)
102 4ga2_A E3 SUMO-protein ligase 98.9 7.1E-09 2.4E-13 81.3 9.5 136 349-486 7-149 (150)
103 3rjv_A Putative SEL1 repeat pr 98.9 7.5E-08 2.6E-12 80.5 16.0 173 22-204 3-200 (212)
104 2ifu_A Gamma-SNAP; membrane fu 98.9 2E-08 6.9E-13 89.5 13.0 216 220-458 4-254 (307)
105 2pzi_A Probable serine/threoni 98.9 1.8E-08 6.2E-13 100.0 13.7 167 280-451 402-583 (681)
106 3rjv_A Putative SEL1 repeat pr 98.9 2.9E-07 9.8E-12 76.9 18.9 157 307-469 21-201 (212)
107 2pzi_A Probable serine/threoni 98.8 6.8E-08 2.3E-12 95.9 16.2 165 249-416 402-583 (681)
108 3qou_A Protein YBBN; thioredox 98.8 1.6E-07 5.4E-12 82.7 16.7 152 105-262 119-279 (287)
109 4f3v_A ESX-1 secretion system 98.8 3.7E-07 1.3E-11 78.1 18.2 186 13-204 15-240 (282)
110 2ifu_A Gamma-SNAP; membrane fu 98.8 2.9E-07 9.9E-12 81.9 17.6 150 270-422 77-253 (307)
111 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.5E-07 5.2E-12 79.5 14.8 182 4-203 3-215 (225)
112 4ga2_A E3 SUMO-protein ligase 98.8 5.4E-08 1.8E-12 76.2 11.1 132 250-383 9-147 (150)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.9E-07 1.3E-11 76.1 16.6 120 345-465 12-150 (213)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.2E-07 1.4E-11 75.9 16.2 125 78-202 12-151 (213)
115 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.2E-07 1.4E-11 76.8 15.9 181 270-466 5-214 (225)
116 2vsy_A XCC0866; transferase, g 98.7 1.6E-07 5.6E-12 91.5 13.7 150 317-468 2-160 (568)
117 2vsy_A XCC0866; transferase, g 98.7 2.2E-07 7.4E-12 90.7 14.3 158 282-442 2-168 (568)
118 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.4E-11 76.6 18.0 155 341-495 77-261 (293)
119 3u3w_A Transcriptional activat 98.6 1.5E-06 5.1E-11 76.7 17.1 195 292-495 34-261 (293)
120 3dra_A Protein farnesyltransfe 98.6 4.8E-06 1.6E-10 72.9 19.8 214 249-464 43-286 (306)
121 3u3w_A Transcriptional activat 98.6 5.9E-06 2E-10 72.8 20.4 131 275-429 121-265 (293)
122 4f3v_A ESX-1 secretion system 98.6 4.3E-06 1.5E-10 71.5 18.4 136 341-478 104-248 (282)
123 2c2l_A CHIP, carboxy terminus 98.6 2.2E-07 7.4E-12 81.4 9.2 94 5-100 4-100 (281)
124 2c2l_A CHIP, carboxy terminus 98.6 2.8E-07 9.6E-12 80.7 9.9 94 271-366 6-99 (281)
125 3gyz_A Chaperone protein IPGC; 98.5 5.2E-07 1.8E-11 70.3 9.9 97 369-466 35-134 (151)
126 3dra_A Protein farnesyltransfe 98.5 3E-05 1E-09 67.9 21.9 222 218-442 43-299 (306)
127 3gw4_A Uncharacterized protein 98.5 8.3E-07 2.8E-11 73.4 11.6 119 115-233 4-133 (203)
128 4gco_A Protein STI-1; structur 98.5 9.9E-07 3.4E-11 66.5 10.7 102 375-478 18-122 (126)
129 3gyz_A Chaperone protein IPGC; 98.5 1E-06 3.4E-11 68.7 10.8 94 400-495 35-128 (151)
130 1na0_A Designed protein CTPR3; 98.5 1.9E-06 6.7E-11 64.5 12.0 111 373-485 12-125 (125)
131 2qfc_A PLCR protein; TPR, HTH, 98.5 1.3E-05 4.4E-10 70.7 19.0 169 271-463 77-264 (293)
132 2lni_A Stress-induced-phosphop 98.5 1.9E-06 6.5E-11 65.5 11.9 113 372-486 18-133 (133)
133 2vyi_A SGTA protein; chaperone 98.5 1.5E-06 5.2E-11 65.8 11.2 114 372-487 14-130 (131)
134 3gw4_A Uncharacterized protein 98.5 1.9E-06 6.4E-11 71.2 12.5 137 269-429 26-175 (203)
135 1a17_A Serine/threonine protei 98.5 1.9E-06 6.5E-11 68.5 11.9 124 339-463 13-144 (166)
136 1a17_A Serine/threonine protei 98.5 2.8E-06 9.7E-11 67.5 12.9 120 373-494 16-140 (166)
137 4gco_A Protein STI-1; structur 98.5 4.3E-06 1.5E-10 62.9 12.9 94 271-366 15-108 (126)
138 2vyi_A SGTA protein; chaperone 98.4 2.5E-06 8.6E-11 64.5 11.0 112 340-452 13-130 (131)
139 1p5q_A FKBP52, FK506-binding p 98.4 3E-07 1E-11 82.8 6.5 91 104-199 197-292 (336)
140 2e2e_A Formate-dependent nitri 98.4 1.8E-06 6.1E-11 69.7 10.1 114 316-430 22-144 (177)
141 1na0_A Designed protein CTPR3; 98.4 1E-05 3.6E-10 60.4 13.8 95 270-366 10-104 (125)
142 2e2e_A Formate-dependent nitri 98.4 1.5E-06 5.1E-11 70.1 9.5 116 350-466 21-145 (177)
143 2lni_A Stress-induced-phosphop 98.4 1E-05 3.6E-10 61.3 13.8 112 269-382 16-130 (133)
144 1p5q_A FKBP52, FK506-binding p 98.4 5.6E-07 1.9E-11 81.1 7.2 146 316-463 125-292 (336)
145 2vgx_A Chaperone SYCD; alterna 98.3 1.2E-06 4.2E-11 68.2 7.8 99 367-466 18-119 (148)
146 2fbn_A 70 kDa peptidylprolyl i 98.3 6.3E-07 2.1E-11 74.0 6.5 118 45-162 8-150 (198)
147 2vgx_A Chaperone SYCD; alterna 98.3 1.8E-06 6.3E-11 67.2 8.7 104 326-430 9-118 (148)
148 3upv_A Heat shock protein STI1 98.3 1E-05 3.4E-10 60.9 11.1 93 373-466 7-102 (126)
149 2fbn_A 70 kDa peptidylprolyl i 98.3 1.9E-06 6.4E-11 71.0 7.6 88 402-491 89-176 (198)
150 4b4t_Q 26S proteasome regulato 98.3 0.00017 5.9E-09 67.4 22.0 158 137-296 58-243 (434)
151 3q7a_A Farnesyltransferase alp 98.2 8.6E-05 2.9E-09 65.8 18.0 165 250-416 66-257 (349)
152 2xcb_A PCRH, regulatory protei 98.2 1E-05 3.5E-10 62.4 10.8 97 369-466 17-116 (142)
153 2kck_A TPR repeat; tetratricop 98.2 7.6E-06 2.6E-10 59.8 9.6 96 370-466 6-107 (112)
154 3upv_A Heat shock protein STI1 98.2 1E-05 3.5E-10 60.9 10.4 92 402-495 5-96 (126)
155 4gcn_A Protein STI-1; structur 98.2 9.7E-06 3.3E-10 61.1 10.0 63 402-464 43-111 (127)
156 3q7a_A Farnesyltransferase alp 98.2 0.00068 2.3E-08 60.1 23.0 83 185-268 67-155 (349)
157 4b4t_Q 26S proteasome regulato 98.2 9.7E-06 3.3E-10 76.0 11.8 98 136-233 137-242 (434)
158 1elw_A TPR1-domain of HOP; HOP 98.2 1.9E-05 6.5E-10 58.2 11.1 93 373-466 7-102 (118)
159 3q49_B STIP1 homology and U bo 98.2 8.9E-06 3E-10 62.2 9.3 112 371-483 10-128 (137)
160 1elw_A TPR1-domain of HOP; HOP 98.2 3.5E-05 1.2E-09 56.8 12.4 101 341-442 6-112 (118)
161 4gcn_A Protein STI-1; structur 98.2 7.5E-06 2.6E-10 61.7 8.6 93 402-495 9-107 (127)
162 3q49_B STIP1 homology and U bo 98.2 2.3E-05 7.8E-10 59.8 11.3 95 399-495 7-101 (137)
163 2dba_A Smooth muscle cell asso 98.2 3.8E-05 1.3E-09 59.4 12.7 109 370-480 28-142 (148)
164 3lvg_A Clathrin heavy chain 1; 98.1 5.2E-07 1.8E-11 81.0 1.7 237 43-290 56-325 (624)
165 1elr_A TPR2A-domain of HOP; HO 98.1 5.4E-06 1.9E-10 62.6 7.2 107 374-482 8-123 (131)
166 2xcb_A PCRH, regulatory protei 98.1 3.8E-05 1.3E-09 59.2 12.0 94 271-366 20-113 (142)
167 1elr_A TPR2A-domain of HOP; HO 98.1 1.7E-05 5.7E-10 59.9 9.9 99 345-445 10-121 (131)
168 2kck_A TPR repeat; tetratricop 98.1 1.9E-05 6.5E-10 57.6 9.9 95 400-495 5-101 (112)
169 3sz7_A HSC70 cochaperone (SGT) 98.1 1.8E-05 6.2E-10 62.7 10.4 115 369-484 10-128 (164)
170 3sz7_A HSC70 cochaperone (SGT) 98.1 1.9E-05 6.4E-10 62.6 10.4 95 336-430 8-108 (164)
171 1hxi_A PEX5, peroxisome target 98.1 1.7E-05 5.8E-10 59.2 9.0 91 373-464 20-113 (121)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.3E-06 1.8E-10 78.1 6.4 145 316-462 246-412 (457)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.4E-06 2.5E-10 77.1 7.2 84 104-192 318-405 (457)
174 3ro3_A PINS homolog, G-protein 98.0 1.6E-05 5.4E-10 62.6 8.1 132 340-495 10-153 (164)
175 1hxi_A PEX5, peroxisome target 98.0 5.7E-05 1.9E-09 56.2 10.2 92 137-234 20-112 (121)
176 2dba_A Smooth muscle cell asso 98.0 0.00014 4.8E-09 56.1 12.8 93 136-234 30-126 (148)
177 3dss_A Geranylgeranyl transfer 98.0 0.0004 1.4E-08 61.2 16.7 74 89-162 91-173 (331)
178 3ro3_A PINS homolog, G-protein 98.0 4.7E-05 1.6E-09 59.8 9.9 138 136-297 11-157 (164)
179 1wao_1 Serine/threonine protei 97.9 1.9E-05 6.4E-10 74.7 8.0 115 379-495 15-134 (477)
180 2l6j_A TPR repeat-containing p 97.9 2.9E-05 9.8E-10 56.7 7.1 93 401-495 4-102 (111)
181 2xev_A YBGF; tetratricopeptide 97.9 0.00011 3.8E-09 55.2 10.5 93 373-466 5-106 (129)
182 1ihg_A Cyclophilin 40; ppiase 97.9 7.2E-05 2.5E-09 68.0 11.0 92 400-493 272-363 (370)
183 1wao_1 Serine/threonine protei 97.9 0.00015 5.3E-09 68.4 13.7 114 248-363 16-134 (477)
184 2xev_A YBGF; tetratricopeptide 97.9 0.0002 6.8E-09 53.8 11.8 90 140-234 8-103 (129)
185 3k9i_A BH0479 protein; putativ 97.8 2E-05 6.8E-10 58.4 5.2 99 382-481 2-107 (117)
186 3rkv_A Putative peptidylprolyl 97.8 6.2E-05 2.1E-09 59.4 7.9 117 339-466 11-127 (162)
187 3dss_A Geranylgeranyl transfer 97.8 0.0072 2.5E-07 53.3 21.2 227 248-480 39-318 (331)
188 3n71_A Histone lysine methyltr 97.8 0.0003 1E-08 66.1 12.9 127 279-429 319-463 (490)
189 3k9i_A BH0479 protein; putativ 97.7 6.7E-05 2.3E-09 55.4 6.9 56 308-364 31-86 (117)
190 3rkv_A Putative peptidylprolyl 97.7 0.00014 4.9E-09 57.3 8.7 93 402-495 12-121 (162)
191 3lvg_A Clathrin heavy chain 1; 97.7 1.9E-05 6.3E-10 71.3 3.6 408 8-453 57-529 (624)
192 1ihg_A Cyclophilin 40; ppiase 97.7 0.00028 9.6E-09 64.1 11.4 88 369-457 272-362 (370)
193 3n71_A Histone lysine methyltr 97.7 0.00042 1.4E-08 65.2 12.8 127 314-464 319-463 (490)
194 2if4_A ATFKBP42; FKBP-like, al 97.7 0.0002 6.9E-09 64.3 10.0 142 270-430 180-328 (338)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00034 1.2E-08 62.8 11.5 144 306-466 181-329 (338)
196 2hr2_A Hypothetical protein; a 97.6 0.00042 1.4E-08 53.4 9.5 90 404-495 14-126 (159)
197 2hr2_A Hypothetical protein; a 97.6 0.001 3.6E-08 51.2 11.2 93 136-234 13-129 (159)
198 1dce_A Protein (RAB geranylger 97.5 0.0028 9.5E-08 61.1 16.5 116 372-489 109-244 (567)
199 1na3_A Designed protein CTPR2; 97.5 0.00079 2.7E-08 46.6 9.7 83 401-485 9-91 (91)
200 2l6j_A TPR repeat-containing p 97.5 0.00019 6.6E-09 52.1 6.0 94 136-233 6-104 (111)
201 2kat_A Uncharacterized protein 97.4 0.00077 2.6E-08 49.3 8.5 97 388-485 3-103 (115)
202 1klx_A Cysteine rich protein B 97.4 0.0015 5.2E-08 49.7 10.3 50 414-466 74-127 (138)
203 2kat_A Uncharacterized protein 97.4 0.00034 1.2E-08 51.3 6.5 77 22-100 2-81 (115)
204 1dce_A Protein (RAB geranylger 97.4 0.012 4.1E-07 56.7 18.7 167 285-454 45-244 (567)
205 1klx_A Cysteine rich protein B 97.3 0.0012 4.2E-08 50.2 9.1 109 186-299 9-127 (138)
206 3mkq_A Coatomer beta'-subunit; 97.3 0.02 6.9E-07 58.2 20.3 157 48-234 606-763 (814)
207 3ma5_A Tetratricopeptide repea 97.3 0.0011 3.6E-08 47.2 7.5 85 400-485 6-91 (100)
208 1na3_A Designed protein CTPR2; 97.2 0.006 2E-07 41.9 10.7 77 136-217 11-87 (91)
209 3ma5_A Tetratricopeptide repea 97.1 0.0014 4.9E-08 46.5 7.2 60 103-162 7-69 (100)
210 1zu2_A Mitochondrial import re 97.0 0.00095 3.2E-08 51.3 5.2 35 352-386 15-52 (158)
211 1wy6_A Hypothetical protein ST 96.9 0.053 1.8E-06 39.6 12.9 135 184-336 19-157 (172)
212 3qww_A SET and MYND domain-con 96.7 0.0096 3.3E-07 54.9 10.6 90 316-429 310-410 (433)
213 3mkq_A Coatomer beta'-subunit; 96.7 0.078 2.7E-06 53.8 18.5 26 270-295 682-707 (814)
214 2kc7_A BFR218_protein; tetratr 96.7 0.0072 2.5E-07 42.4 7.7 58 408-466 7-65 (99)
215 1zu2_A Mitochondrial import re 96.6 0.0085 2.9E-07 46.0 8.1 70 146-220 14-93 (158)
216 3qwp_A SET and MYND domain-con 96.4 0.034 1.2E-06 51.3 12.2 89 276-364 294-396 (429)
217 3ly7_A Transcriptional activat 96.4 0.033 1.1E-06 49.4 11.3 72 399-474 275-346 (372)
218 3qwp_A SET and MYND domain-con 96.4 0.027 9.3E-07 52.0 11.3 28 402-429 372-399 (429)
219 3qww_A SET and MYND domain-con 96.3 0.034 1.2E-06 51.3 11.6 85 281-365 310-408 (433)
220 3ly7_A Transcriptional activat 96.2 0.058 2E-06 47.9 11.7 138 300-440 190-347 (372)
221 2kc7_A BFR218_protein; tetratr 96.2 0.034 1.2E-06 38.8 8.6 59 140-203 6-66 (99)
222 3mkq_B Coatomer subunit alpha; 96.1 0.19 6.3E-06 39.2 12.7 97 350-459 16-112 (177)
223 1wy6_A Hypothetical protein ST 96.0 0.28 9.6E-06 35.9 14.9 139 315-468 18-157 (172)
224 3mkq_B Coatomer subunit alpha; 96.0 0.4 1.4E-05 37.4 15.7 102 114-235 16-117 (177)
225 3bee_A Putative YFRE protein; 96.0 0.02 7E-07 39.6 6.5 64 4-69 5-71 (93)
226 3u64_A Protein TP_0956; tetrat 95.8 0.3 1E-05 41.5 13.8 90 386-477 179-283 (301)
227 1pc2_A Mitochondria fission pr 95.7 0.062 2.1E-06 40.8 8.4 83 386-471 14-104 (152)
228 3u64_A Protein TP_0956; tetrat 95.6 0.16 5.3E-06 43.3 11.3 124 220-343 134-281 (301)
229 3bee_A Putative YFRE protein; 95.4 0.085 2.9E-06 36.4 7.8 64 401-465 6-72 (93)
230 4h7y_A Dual specificity protei 95.2 0.15 5E-06 38.2 8.7 107 367-474 10-132 (161)
231 2v5f_A Prolyl 4-hydroxylase su 95.1 0.17 6E-06 35.7 8.8 63 404-466 8-76 (104)
232 2v5f_A Prolyl 4-hydroxylase su 95.0 0.056 1.9E-06 38.3 6.1 67 2-68 2-73 (104)
233 3ltm_A Alpha-REP4; protein eng 94.8 1.3 4.5E-05 35.9 18.7 171 38-220 31-201 (211)
234 3ltj_A Alpharep-4; protein eng 94.5 1.5 5.2E-05 35.2 18.9 166 43-219 30-195 (201)
235 3ltm_A Alpha-REP4; protein eng 94.5 1.6 5.5E-05 35.4 17.5 126 55-187 16-141 (211)
236 1pc2_A Mitochondria fission pr 94.1 0.96 3.3E-05 34.3 11.1 79 286-366 15-98 (152)
237 4b4t_P 26S proteasome regulato 94.0 0.49 1.7E-05 43.8 11.4 87 211-297 141-246 (445)
238 4h7y_A Dual specificity protei 93.8 0.81 2.8E-05 34.3 9.9 107 336-443 10-135 (161)
239 1nzn_A CGI-135 protein, fissio 93.1 0.34 1.1E-05 35.3 6.9 81 385-466 16-104 (126)
240 4b4t_P 26S proteasome regulato 93.0 5.6 0.00019 36.8 18.6 251 18-268 29-325 (445)
241 2wpv_A GET4, UPF0363 protein Y 91.7 6.2 0.00021 34.2 17.9 67 239-316 34-104 (312)
242 2ff4_A Probable regulatory pro 91.4 1.3 4.3E-05 40.3 10.1 68 406-474 176-248 (388)
243 4gns_B Protein CSD3, chitin bi 91.1 0.49 1.7E-05 46.7 7.5 51 111-161 345-398 (754)
244 3txn_A 26S proteasome regulato 91.0 7.7 0.00026 34.9 14.6 89 406-494 104-204 (394)
245 4fhn_B Nucleoporin NUP120; pro 90.7 4.9 0.00017 42.5 15.1 64 137-201 902-967 (1139)
246 3ffl_A Anaphase-promoting comp 90.3 3.7 0.00013 31.4 10.1 61 7-67 22-89 (167)
247 3ltj_A Alpharep-4; protein eng 90.3 5.9 0.0002 31.6 20.2 176 63-249 19-194 (201)
248 4fhn_B Nucleoporin NUP120; pro 90.2 16 0.00056 38.5 18.6 53 212-265 817-869 (1139)
249 4gns_B Protein CSD3, chitin bi 90.0 3.3 0.00011 40.9 12.2 51 347-397 345-398 (754)
250 1nzn_A CGI-135 protein, fissio 89.5 1.9 6.6E-05 31.3 7.7 80 286-366 18-101 (126)
251 1v54_E Cytochrome C oxidase po 89.5 3.3 0.00011 28.5 8.1 50 284-333 25-74 (109)
252 1v54_E Cytochrome C oxidase po 88.9 3.3 0.00011 28.5 7.8 67 314-380 19-89 (109)
253 3lpz_A GET4 (YOR164C homolog); 88.8 11 0.00039 32.8 23.9 163 109-296 41-214 (336)
254 3lpz_A GET4 (YOR164C homolog); 88.5 12 0.00041 32.7 19.9 40 369-408 135-174 (336)
255 2uwj_G Type III export protein 88.2 4.7 0.00016 27.6 9.4 60 377-439 46-105 (115)
256 2p58_C Putative type III secre 87.7 5.1 0.00017 27.4 9.7 59 378-439 48-106 (116)
257 4ady_A RPN2, 26S proteasome re 86.2 32 0.0011 35.0 37.2 87 41-130 145-257 (963)
258 3o48_A Mitochondria fission 1 86.1 6.4 0.00022 28.8 8.6 71 399-471 38-111 (134)
259 2wpv_A GET4, UPF0363 protein Y 86.1 16 0.00055 31.6 22.3 128 108-249 38-176 (312)
260 1qsa_A Protein (soluble lytic 85.6 27 0.00092 33.8 38.9 117 44-163 10-131 (618)
261 2ff4_A Probable regulatory pro 85.5 4.3 0.00015 36.7 9.5 69 138-210 175-248 (388)
262 2y69_E Cytochrome C oxidase su 85.0 7 0.00024 28.6 8.1 44 288-331 72-115 (152)
263 3txn_A 26S proteasome regulato 83.9 24 0.00082 31.8 22.7 156 210-365 22-207 (394)
264 2y69_E Cytochrome C oxidase su 82.8 9.2 0.00031 28.0 8.0 61 319-379 68-131 (152)
265 3o48_A Mitochondria fission 1 82.7 12 0.00041 27.4 8.8 68 168-235 36-106 (134)
266 1oyz_A Hypothetical protein YI 82.0 22 0.00076 30.0 25.9 122 336-464 139-262 (280)
267 4ady_A RPN2, 26S proteasome re 82.0 48 0.0016 33.8 34.9 245 246-493 382-651 (963)
268 1oyz_A Hypothetical protein YI 81.7 23 0.00078 29.9 24.4 47 205-251 140-186 (280)
269 1y8m_A FIS1; mitochondria, unk 81.3 15 0.0005 27.4 10.6 70 399-470 37-109 (144)
270 4a1g_A Mitotic checkpoint seri 79.7 5.3 0.00018 30.2 6.3 52 59-110 83-139 (152)
271 3ffl_A Anaphase-promoting comp 78.1 21 0.00072 27.4 12.1 59 139-199 25-90 (167)
272 1y8m_A FIS1; mitochondria, unk 76.3 21 0.00073 26.5 8.8 67 367-435 36-109 (144)
273 4b4t_R RPN7, 26S proteasome re 74.6 24 0.00081 32.4 10.6 58 105-162 133-196 (429)
274 4b4t_R RPN7, 26S proteasome re 74.0 13 0.00045 34.1 8.7 94 372-465 133-237 (429)
275 2d2s_A Exocyst complex compone 73.3 29 0.00098 28.6 9.7 90 139-232 23-116 (235)
276 3eiq_C Programmed cell death p 72.0 48 0.0017 29.3 11.3 78 240-318 56-137 (358)
277 2uwj_G Type III export protein 71.6 22 0.00074 24.4 9.3 56 249-307 50-105 (115)
278 1zbp_A Hypothetical protein VP 71.0 14 0.00049 30.9 7.3 52 314-366 7-58 (273)
279 1zbp_A Hypothetical protein VP 70.3 29 0.001 29.1 8.9 104 378-493 5-122 (273)
280 2nsz_A Programmed cell death p 70.3 25 0.00085 25.7 7.8 66 137-206 10-77 (129)
281 2wvi_A Mitotic checkpoint seri 69.2 11 0.00036 29.0 5.7 27 74-100 98-124 (164)
282 3esl_A Checkpoint serine/threo 68.0 15 0.00051 29.2 6.4 47 23-69 97-143 (202)
283 2p58_C Putative type III secre 65.8 30 0.001 23.8 10.4 54 187-242 22-75 (116)
284 2ion_A PDCD4, programmed cell 65.3 34 0.0011 25.9 7.8 66 137-206 12-79 (152)
285 4aez_C MAD3, mitotic spindle c 64.1 15 0.00051 29.8 5.9 27 74-100 152-178 (223)
286 3esl_A Checkpoint serine/threo 61.3 60 0.0021 25.8 11.8 54 417-470 95-149 (202)
287 4b4t_S RPN3, 26S proteasome re 60.7 62 0.0021 30.3 10.1 58 73-130 232-297 (523)
288 1wdy_A 2-5A-dependent ribonucl 60.6 44 0.0015 27.9 9.0 82 47-130 42-129 (285)
289 2fu4_A Ferric uptake regulatio 59.8 33 0.0011 22.3 7.7 63 425-488 6-69 (83)
290 1wdy_A 2-5A-dependent ribonucl 58.8 25 0.00086 29.5 7.1 238 242-494 6-273 (285)
291 3ygs_P Procaspase 9; apoptosis 55.5 19 0.00063 24.7 4.5 67 24-93 23-89 (97)
292 2d2s_A Exocyst complex compone 55.2 44 0.0015 27.5 7.4 29 434-462 89-117 (235)
293 2w57_A Ferric uptake regulatio 53.6 65 0.0022 24.1 7.7 62 425-487 6-68 (150)
294 2fe3_A Peroxide operon regulat 52.7 54 0.0018 24.4 7.1 62 425-487 11-72 (145)
295 2xig_A Ferric uptake regulatio 51.6 66 0.0023 24.1 7.5 63 424-487 15-77 (150)
296 2r9g_A AAA ATPase, central reg 50.1 94 0.0032 24.6 9.9 61 275-336 17-85 (204)
297 1ug3_A EIF4GI, eukaryotic prot 49.3 1.3E+02 0.0044 26.4 10.0 23 78-100 17-39 (339)
298 3eiq_C Programmed cell death p 48.2 1.5E+02 0.005 26.3 17.9 70 272-342 220-291 (358)
299 3bge_A Predicted ATPase; struc 47.7 1E+02 0.0035 24.4 9.3 44 275-318 10-56 (201)
300 3kea_A K1L; tropism, ANK repea 47.6 59 0.002 27.5 7.6 141 246-395 36-183 (285)
301 3eyy_A Putative iron uptake re 46.4 59 0.002 24.2 6.4 61 425-487 8-68 (145)
302 2qx5_A Nucleoporin NIC96; mRNA 45.8 2.2E+02 0.0076 27.7 20.3 26 137-162 155-180 (661)
303 4b4t_S RPN3, 26S proteasome re 45.6 2E+02 0.0067 27.0 11.2 61 338-398 230-298 (523)
304 4gq2_M Nucleoporin NUP120; bet 45.3 1.7E+02 0.0057 30.2 11.5 52 109-161 816-867 (950)
305 1mzb_A Ferric uptake regulatio 44.3 91 0.0031 22.8 7.4 61 426-487 8-69 (136)
306 4ets_A Ferric uptake regulatio 42.3 78 0.0027 24.1 6.6 69 418-487 14-85 (162)
307 3ctd_A Putative ATPase, AAA fa 42.2 1.3E+02 0.0045 24.0 9.7 63 274-336 37-107 (213)
308 4gq2_M Nucleoporin NUP120; bet 42.1 2.1E+02 0.0072 29.5 11.6 48 438-485 899-950 (950)
309 1ug3_A EIF4GI, eukaryotic prot 42.0 1.8E+02 0.006 25.5 11.4 23 109-131 17-39 (339)
310 1te4_A Conserved protein MTH18 41.7 63 0.0021 23.2 5.9 50 70-119 54-103 (131)
311 1n11_A Ankyrin; clathrin, BAND 40.9 2E+02 0.007 25.9 11.7 83 47-130 17-104 (437)
312 2wvi_A Mitotic checkpoint seri 40.7 1.2E+02 0.0041 23.2 11.0 59 418-476 77-136 (164)
313 4a1g_A Mitotic checkpoint seri 39.7 1.2E+02 0.0041 22.8 12.0 60 418-477 82-142 (152)
314 3eu9_A Huntingtin-interacting 38.4 1.1E+02 0.0038 24.4 7.7 17 217-233 16-32 (240)
315 2qx5_A Nucleoporin NIC96; mRNA 38.1 2.9E+02 0.01 26.9 19.7 80 213-295 300-382 (661)
316 2zu6_B Programmed cell death p 38.1 1.9E+02 0.0066 24.8 13.3 65 241-306 6-74 (307)
317 3b7b_A Euchromatic histone-lys 37.0 1.6E+02 0.0055 23.5 9.0 15 316-330 219-233 (237)
318 3kea_A K1L; tropism, ANK repea 36.2 1.9E+02 0.0065 24.2 9.4 53 214-266 35-87 (285)
319 2ion_A PDCD4, programmed cell 35.6 1.4E+02 0.0048 22.4 9.7 22 285-306 61-82 (152)
320 2p1h_A APAF-1, apoptotic prote 35.3 90 0.0031 20.9 5.4 64 24-92 24-87 (94)
321 3hra_A Ankyrin repeat family p 34.8 76 0.0026 24.7 5.9 13 250-262 14-26 (201)
322 3jxi_A Vanilloid receptor-rela 34.6 86 0.003 25.7 6.5 55 277-331 10-73 (260)
323 4aez_C MAD3, mitotic spindle c 34.2 1.9E+02 0.0064 23.5 11.2 60 417-476 130-190 (223)
324 3ygs_P Procaspase 9; apoptosis 33.4 83 0.0028 21.4 5.0 33 222-254 52-84 (97)
325 4ets_A Ferric uptake regulatio 33.2 1E+02 0.0036 23.4 6.0 70 151-223 14-85 (162)
326 2keb_A DNA polymerase subunit 32.9 1.2E+02 0.004 20.7 6.3 60 417-478 25-89 (101)
327 2nsz_A Programmed cell death p 32.5 1.4E+02 0.0048 21.6 10.8 63 244-306 13-80 (129)
328 3jxi_A Vanilloid receptor-rela 31.9 2E+02 0.0069 23.4 8.4 115 12-127 9-161 (260)
329 2fu4_A Ferric uptake regulatio 31.6 1E+02 0.0036 19.8 7.7 62 293-355 6-68 (83)
330 1te4_A Conserved protein MTH18 31.6 1.4E+02 0.0048 21.3 7.0 50 100-149 53-102 (131)
331 3mwm_A ZUR, putative metal upt 31.5 85 0.0029 23.1 5.2 41 445-485 22-62 (139)
332 2p1h_A APAF-1, apoptotic prote 31.1 1.2E+02 0.0041 20.3 6.7 59 193-255 26-84 (94)
333 1n11_A Ankyrin; clathrin, BAND 30.9 2.9E+02 0.01 24.7 10.4 81 47-129 50-136 (437)
334 1k1a_A B-cell lymphoma 3-encod 30.1 1.7E+02 0.0058 23.4 7.5 19 184-202 18-36 (241)
335 1k1a_A B-cell lymphoma 3-encod 29.7 1.8E+02 0.0063 23.1 7.7 20 16-35 17-36 (241)
336 2w57_A Ferric uptake regulatio 29.6 1.7E+02 0.006 21.7 7.8 63 293-356 6-69 (150)
337 2xig_A Ferric uptake regulatio 29.4 1.8E+02 0.006 21.7 7.5 62 293-355 16-77 (150)
338 2o03_A Probable zinc uptake re 29.3 92 0.0031 22.6 5.0 42 409-450 18-59 (131)
339 3eu9_A Huntingtin-interacting 29.3 2.1E+02 0.0073 22.6 8.8 17 113-129 49-65 (240)
340 2etb_A Transient receptor pote 29.1 1.2E+02 0.004 24.8 6.4 116 11-127 5-157 (256)
341 2zu6_B Programmed cell death p 28.7 2.8E+02 0.0096 23.8 16.8 66 241-306 169-239 (307)
342 2rg8_A Programmed cell death p 28.0 1.3E+02 0.0045 23.0 5.7 25 138-162 14-38 (165)
343 2ijq_A Hypothetical protein; s 27.9 1.8E+02 0.0061 22.2 6.3 30 415-444 46-77 (161)
344 2fe3_A Peroxide operon regulat 27.7 1.8E+02 0.0063 21.4 7.0 46 406-451 26-71 (145)
345 2ekk_A UBA domain from E3 ubiq 27.1 85 0.0029 17.7 3.5 32 458-494 12-43 (47)
346 1s6c_A KV4 potassium channel-i 27.0 2E+02 0.007 21.7 8.5 105 56-160 54-182 (183)
347 2keb_A DNA polymerase subunit 25.7 1E+02 0.0034 21.1 4.0 35 452-486 25-59 (101)
348 3l6a_A Eukaryotic translation 25.5 3.5E+02 0.012 23.9 11.8 212 273-484 16-246 (364)
349 2ijq_A Hypothetical protein; s 24.9 2.3E+02 0.0078 21.5 7.4 47 382-428 44-102 (161)
350 2rfa_A Transient receptor pote 24.6 2.6E+02 0.0089 22.1 8.9 28 178-205 157-184 (232)
351 2rg8_A Programmed cell death p 23.8 99 0.0034 23.6 4.4 58 372-429 12-73 (165)
352 2o03_A Probable zinc uptake re 23.5 1.7E+02 0.0059 21.1 5.5 39 448-486 22-60 (131)
353 3mwm_A ZUR, putative metal upt 22.3 1.5E+02 0.0052 21.7 5.1 45 407-451 19-63 (139)
354 3bqo_A Telomeric repeat-bindin 21.2 3.1E+02 0.011 21.7 9.8 113 305-417 24-166 (211)
355 3t8k_A Uncharacterized protein 21.2 2.8E+02 0.0097 21.3 7.6 54 418-471 91-149 (186)
356 1mzb_A Ferric uptake regulatio 20.9 2.4E+02 0.0084 20.4 7.4 61 294-355 8-69 (136)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-41 Score=334.45 Aligned_cols=445 Identities=10% Similarity=-0.001 Sum_probs=381.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCC
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGHKEKSLQLFNVMP--QKNDFSWNMLISGFAKAGE 118 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 118 (496)
.++.++..|.+.|++++|+.+|+++.. |+..++..++.+|.+.|++++|..+|+++. .++..+++.++.+|.+.|+
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhh
Confidence 789999999999999999999998864 777888999999999999999999999985 4788899999999999999
Q ss_pred hhHHHHHHhhcCCC-------------------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHH
Q 010961 119 LKTARTLFNDMPRR-------------------NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATV 178 (496)
Q Consensus 119 ~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l 178 (496)
+++|.++|+++... +..+|+.++.+|.+.|++++|++.|+++.+ ..| +...+..+
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l 240 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM-----VDAKCYEAFDQL 240 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHH
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCchhhHHHHHH
Confidence 99999999965433 367899999999999999999999999987 334 34455555
Q ss_pred HHHHHccchHHH--HHHH-HHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCC
Q 010961 179 IGACADLAALEY--GKQI-HSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGK 253 (496)
Q Consensus 179 l~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 253 (496)
...+...+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..+|..++.+|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 544443333322 2222 55555556666667778888899999999999999999987 889999999999999999
Q ss_pred hhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHH
Q 010961 254 MNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHA 330 (496)
Q Consensus 254 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 330 (496)
+++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999998764 467789999999999999999999999998653 567889999999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhH
Q 010961 331 CKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISW 404 (496)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 404 (496)
.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|.++|+++.+ .+..+|
T Consensus 400 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 400 STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 8864 4567789999999999999999999999887 55788999999999999999999999999864 467899
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 405 NSMIVGLSQNGSPIEALDLFCNMNKL----DLRMD--KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 405 ~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|...++++.+.+ +.+..++..++
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999999876 66787 7899999999999999999999999998876 34789999999
Q ss_pred HHHHhcCChHHHHHhhh
Q 010961 479 DFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 479 ~~~~~~g~~~~A~~~~~ 495 (496)
.+|.+.|++++|.+.++
T Consensus 558 ~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 99999999999999876
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-40 Score=327.02 Aligned_cols=468 Identities=13% Similarity=0.042 Sum_probs=396.3
Q ss_pred cchhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCC--CCChhhHHHHHH
Q 010961 3 TRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMP--RRNCFSWNAMIE 80 (496)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~ 80 (496)
++...+..++..|.+.|++++|..+++.+.+.. |+.. ++..++.+|.+.|++++|+.+|+.+. .++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 456778899999999999999999999999765 5556 88899999999999999999999995 478899999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-------------------ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQK-------------------NDFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWN 138 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~ 138 (496)
+|.+.|++++|+++|+++... +..+|+.++.+|.+.|++++|.++|+++.+ | +...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999975543 378999999999999999999999999975 3 334555
Q ss_pred HHHHHHHHcCCHHHHHH--H-HHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVR--L-FKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
.+...+...+..+.+.. + +..+.. .+..+...+|+.++..|.+.|++++|.++++++.+. +++..+++.++.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSK---EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHG---GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCccccc---chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55554443333222211 1 344433 344556667777888899999999999999998876 578899999999
Q ss_pred HHHhcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHH
Q 010961 216 LYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEAL 289 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 289 (496)
.|.+.|++++|..+|+++.+ .+..++..++.++.+.|++++|.++++++.+ .+..+|+.++..|.+.|++++|.
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999863 4677899999999999999999999998754 45778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---
Q 010961 290 LLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--- 366 (496)
Q Consensus 290 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--- 366 (496)
++|+++.+.. +.+..++..++..+.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998753 4567899999999999999999999999998875 4577889999999999999999999999987
Q ss_pred cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH
Q 010961 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMP--------NKS--LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 436 (496)
+.++.+|..++..|.+.|++++|.++|+++. .|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 5678899999999999999999999999874 344 6789999999999999999999999999875 5588
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 437 FSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
.+|..+..+|.+.|++++|.+.++++.+.... +...+..|..+|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 99999999999999999999999999886532 5667777766653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.5e-27 Score=219.96 Aligned_cols=365 Identities=12% Similarity=0.027 Sum_probs=230.6
Q ss_pred HHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHH
Q 010961 113 FAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE 189 (496)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 189 (496)
+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|...++...+. .+.+..++..+..++...|+++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHH
Confidence 3344444444444444331 2 2223334444444455555555555444441 2233444555555555555555
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 190 YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 190 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
+|...++++.+..+. +...+..+..++...|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|+++.+
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555443221 333455555555555555555555555442 22 23444455555555666666655555443
Q ss_pred --C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHH
Q 010961 267 --T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVAS 343 (496)
Q Consensus 267 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (496)
| +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+..+.. +.+..++.
T Consensus 164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 24567777777777777777777777777643 3345666677777777777888877777777654 33466677
Q ss_pred HHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCCh
Q 010961 344 ALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSP 417 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 417 (496)
.+..++...|++++|.+.|+++. +.++.++..+...+.+.|++++|...|+++.+ .+..++..+...+...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 77777888888888888877766 33456777778888888888888888877654 4667888888889999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 418 IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 418 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
++|.+.++++.+.. +.+..++..+..++.+.|++++|...++++.+... .+...+..+...+.+.|+
T Consensus 322 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHccC
Confidence 99999999888752 44677888889999999999999999998876432 245777777777766653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-29 Score=240.37 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=169.3
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---------chhhHHHHHHHHHHcCCCchHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG---------FLEHGKQVHGHACKVGVIDDVI 340 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 340 (496)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 3678999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhH
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 420 (496)
+|+++|.+|++.|++++|.++|++|.. .-..||..+|+++|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~---------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA---------------------------FGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------TTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCccceehHHHHHHHHCCCHHHH
Confidence 999999999999999999988887642 22358999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...+
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999887643
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.3e-27 Score=218.71 Aligned_cols=365 Identities=12% Similarity=0.052 Sum_probs=210.2
Q ss_pred HHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhH
Q 010961 48 LQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKT 121 (496)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 121 (496)
...+.+.|++++|++.++.+.+ | +...+..+...+.+.|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 4445566666666666655542 2 334445555555666666666666655443 234455555555666666666
Q ss_pred HHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCH-HHHHHHHHHHHccchHHHHHHHHHH
Q 010961 122 ARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDA-FILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 122 a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+ ..|+. ..+..+...+...|++++|.+.+++
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-----YNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6665555542 2 233455555555555666666665555554 22332 2333444445555555555555555
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHH
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMIS 277 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 277 (496)
+.+..+. +..++..+...+...|++++|...|+++.+.+ ..+...|..+..
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~~~~~lg~ 211 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----------------------------PNFLDAYINLGN 211 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------------CCcHHHHHHHHH
Confidence 5544322 33444555555555555555555555443210 012334555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhh
Q 010961 278 GYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSD 357 (496)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (496)
.+...|++++|+..+++..... +.+..++..+...+...|++++|...++.+.+.+ +.++.++..+..++...|++++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666555432 2234555556666666666666666666666543 2334456666666666666666
Q ss_pred HHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 010961 358 ACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 358 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 431 (496)
|.+.|+++. +.+..++..+...+.+.|++++|...++++.+ | +..++..+...|.+.|++++|...++++.+.
T Consensus 290 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~- 368 (388)
T 1w3b_A 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI- 368 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 666666655 44555666677777777777777777777664 3 4567888889999999999999999998875
Q ss_pred CCC-CHHHHHHHHHHHhccC
Q 010961 432 LRM-DKFSLASVISACANIS 450 (496)
Q Consensus 432 ~~p-~~~~~~~l~~~~~~~g 450 (496)
.| +...|..+...+...|
T Consensus 369 -~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 369 -SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -CTTCHHHHHHHHHHHHHTC
T ss_pred -CCCCHHHHHhHHHHHHHcc
Confidence 44 4566666666655444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-28 Score=233.56 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=168.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccc---------hHHHHHHHHHHHHHcCCCc
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA---------ALEYGKQIHSHILVNGLDF 205 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~ 205 (496)
..++.+|++|++.|++++|+++|++|.+ .|++||..||++||.+|++.+ .++.|.++|++|.+.|+.|
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~---~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARR---NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH---HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 4578889999999999999999999999 689999999999999998654 5788999999999999999
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCH
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNED 285 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (496)
|..+|+++|.+|++.|++++|.++|++|.+.+ ..||..+|+.+|.+|++.|++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCCH
Confidence 99999999999999999999999999887533 345588889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.|..|+..||+.++..++..
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-24 Score=210.03 Aligned_cols=244 Identities=12% Similarity=0.037 Sum_probs=170.5
Q ss_pred cCChhhHHHHHHhcCC----------------C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHH
Q 010961 220 CGDFNSANQVLNMMKE----------------P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYI 280 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~ 280 (496)
.|++++|...++++.+ | +...+..+...+...|++++|...|+++.+ |+...+..+...+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 6777777777776543 1 234566677777777788887777776543 33556667777777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHH
Q 010961 281 SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACK 360 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 360 (496)
..|++++|...++++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777653 3455666777777777777788887777777654 3345566777777777777777777
Q ss_pred HHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C------hhhHHHHHHHHHh---CCChhhHHHHHH
Q 010961 361 LFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-S------LISWNSMIVGLSQ---NGSPIEALDLFC 425 (496)
Q Consensus 361 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~------~~~~~~l~~~~~~---~g~~~~a~~~~~ 425 (496)
.++++. +.++..+..+...+...|++++|...++++.+ | + ..++..+...+.. .|++++|...++
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 777765 34566777777777777777777777777653 1 1 2267777777777 777777877777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
++.+.. +.+..++..+...+.+.|++++|...++.+.+..
T Consensus 440 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 440 KASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 777652 3456677777777777778888877777777654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.3e-24 Score=207.66 Aligned_cols=421 Identities=10% Similarity=-0.039 Sum_probs=281.4
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHH
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGF 82 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 82 (496)
..+......+...|++++|...|+.+++.. |+.. ++..+..+|.+.|++++|+..|+++.+ .+..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHH-HHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 344555566666666666666666666665 3433 666666666666666666666665543 2345566666666
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CCcccHHHHHHHHHHcCCHHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR----RNAIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~ 155 (496)
.+.|++++|...|+++.. ++......++..+........+.+.+..+.. ++...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 666666666666665543 2223333333333332222222222222211 111111111111111111111111
Q ss_pred HHHHHHHchhccCC--------cC-HHHHHHHHHHHHc---cchHHHHHHHHHHHHH-----cCC--------CcchhHH
Q 010961 156 LFKELNSDLVERLQ--------CD-AFILATVIGACAD---LAALEYGKQIHSHILV-----NGL--------DFDSVLG 210 (496)
Q Consensus 156 ~~~~~~~~~~~~~~--------p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 210 (496)
+...+.. .... |+ ...+......+.. .|+++.|...++++.+ ... +.+..++
T Consensus 164 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 164 MASFFGI---FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHTT---SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred HHHHHhh---cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111 0111 11 3444444444444 8999999999999988 311 2245677
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNED 285 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 285 (496)
..+...+...|++++|...++++.+ |+...+..+...+...|++++|...++++.+ .+...|..+...+...|++
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 8888999999999999999998763 5577888899999999999999999998765 3466888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
++|+..+++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998864 4456788888899999999999999999998864 445678888999999999999999999988
Q ss_pred c---cCc------hhhHHHHHHHHHh---cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 366 K---VYD------TILLNTMITVYSS---CGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 366 ~---~~~------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
. +.+ ...+..+...+.. .|++++|...++++.+ .+..++..+...|.+.|++++|...+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7 222 2388889999999 9999999999998764 35678889999999999999999999999886
Q ss_pred CCCCCH
Q 010961 431 DLRMDK 436 (496)
Q Consensus 431 ~~~p~~ 436 (496)
.|+.
T Consensus 479 --~~~~ 482 (514)
T 2gw1_A 479 --ARTM 482 (514)
T ss_dssp --CSSH
T ss_pred --cccc
Confidence 4554
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=7.5e-23 Score=199.31 Aligned_cols=414 Identities=11% Similarity=0.064 Sum_probs=257.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 116 (496)
.+..+...+.+.|++++|+..|+++.+ .+..+|..+..++.+.|++++|++.++++.+ .+..++..+..++...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 566777777777888888877777654 3566777777777777888888877777654 3456677777777777
Q ss_pred CChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHch---hccCCcCHHHHHHHHHHHHccchHHHHHH
Q 010961 117 GELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDL---VERLQCDAFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
|++++|...|+.+. .+....+..+..+...+...+|...++++.... .....|+...... +....+.+.+..
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHHHH
Confidence 78888877776432 222222333445555566677777777775420 0122343333222 222333333332
Q ss_pred HHHHHHHcCCCcc-hhHHHHHHHHHHh--------cCChhhHHHHHHhcCC--CC--------hHHHHHHHHHHHhcCCh
Q 010961 194 IHSHILVNGLDFD-SVLGSSLVNLYGK--------CGDFNSANQVLNMMKE--PD--------DFCLSALISGYANCGKM 254 (496)
Q Consensus 194 ~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~ 254 (496)
.+..... ..+. ......+...+.. .|++++|..+++++.+ |+ ..++..+...+...|++
T Consensus 182 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 2222111 1111 1122333333222 2467777777777764 33 22455566667777788
Q ss_pred hHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 255 NDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 255 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
++|...|+++.+ |+...|..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888887777654 445667777777777788888888887777653 34566677777777777888888888877777
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------C
Q 010961 333 VGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-------S 400 (496)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------~ 400 (496)
.. +.+...+..+..++...|++++|...+++.. +.++..+..+...+...|++++|...|+++.+ | .
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 54 3345667777777778888888888777766 44556777777777788888888777777653 1 1
Q ss_pred hhhHHHHHHHHHhC----------CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 401 LISWNSMIVGLSQN----------GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 401 ~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
...+..+...+... |++++|...++++.+.. +.+...+..+..++...|++++|...++...+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 12234445666666 77888888888777652 4456677777777778888888888888777654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=3.8e-22 Score=189.81 Aligned_cols=359 Identities=10% Similarity=0.005 Sum_probs=203.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHH
Q 010961 102 NDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATV 178 (496)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 178 (496)
+...+..+...+.+.|++++|..+|+.+.+ .+..+|..+..++...|++++|++.|+++.+. .+.+...+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHHH
Confidence 345666777777777777777777776653 35566777777777777777777777777662 22345666667
Q ss_pred HHHHHccchHHHHHHHHHHHHHcCCCcch---hHHHHHH------------HHHHhcCChhhHHHHHHhcCC---CChHH
Q 010961 179 IGACADLAALEYGKQIHSHILVNGLDFDS---VLGSSLV------------NLYGKCGDFNSANQVLNMMKE---PDDFC 240 (496)
Q Consensus 179 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~---~~~~~ 240 (496)
..++...|+++.|...++.+.+.... +. ..+..+. ..+...|++++|...|+++.+ .+...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 77777777777777777777665432 22 3333332 235555666666666655442 23444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-ASTLASVLSACSS 316 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~ 316 (496)
+..+..++.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+ ...+..+ ...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~-~~~-- 254 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY-KQV-- 254 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH-HHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHH-HHH--
Confidence 55555555555555555555555432 23445555555555555555555555555442 222 2222211 000
Q ss_pred ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc-----hhhHHHHHHHHHhcCCHHHH
Q 010961 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYD-----TILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~a 389 (496)
........+...+...|++++|...|+++. .|+ ...+..+...+.+.|++++|
T Consensus 255 --------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 255 --------------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 000001112555566666666666666655 222 22455566666666666666
Q ss_pred HHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHHH------------HHhccC---
Q 010961 390 KHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVIS------------ACANIS--- 450 (496)
Q Consensus 390 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~------------~~~~~g--- 450 (496)
...++++.+ | +..+|..+..+|...|++++|...++++.+. .| +...+..+.. .|...|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 666666542 3 4566777777777777777777777777764 34 3444554442 233334
Q ss_pred --chhhHHHHHHH-HHHcCCC--ch-------HHHHHHHHHHHHhcCChHHHHH
Q 010961 451 --SLELGEQVFAR-VTIIGLD--SD-------QIISTSLVDFYCKCGFIKMDEY 492 (496)
Q Consensus 451 --~~~~a~~~~~~-~~~~~~~--~~-------~~~~~~l~~~~~~~g~~~~A~~ 492 (496)
+.+++.+.+++ ..+..+. |+ ...+..+..+|...|+.+++..
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 55667777775 3332211 11 2477788888888888776654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4e-22 Score=194.16 Aligned_cols=416 Identities=11% Similarity=0.004 Sum_probs=321.3
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEG 81 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 81 (496)
+..+..+...+...|++++|...|+.+++.. |+...++..+...|.+.|++++|++.|+++.+ .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4567778888999999999999999999987 55555899999999999999999999998864 467789999999
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCC------CcccHHHHHHHHHHcCCHHHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRR------NAIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 155 (496)
+...|++++|+..|+.+.. ++......+..+...+...+|...++.+... ........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999999974432 2222233344555666678899999888652 22344556666777888877776
Q ss_pred HHHHHHHchhccCCcCHHHHHHHH-HHHHc--------cchHHHHHHHHHHHHHcCCCcc------hhHHHHHHHHHHhc
Q 010961 156 LFKELNSDLVERLQCDAFILATVI-GACAD--------LAALEYGKQIHSHILVNGLDFD------SVLGSSLVNLYGKC 220 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll-~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 220 (496)
.+..... ..+....+...+ ..+.. .++++.|..+++.+.+..+... ..++..+...+...
T Consensus 182 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 182 SVNTSSN-----YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp TSCCCCS-----SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhccc-----cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 6554433 334333333322 22222 2588999999999987654421 23566777888899
Q ss_pred CChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 221 GDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 221 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
|++++|...++...+ |+...+..+...+...|++++|.+.|+++.+ .+..+|..+...+...|++++|...+++.
T Consensus 257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998874 7778889999999999999999999998764 34678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc---Cch--
Q 010961 296 RRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV---YDT-- 370 (496)
Q Consensus 296 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-- 370 (496)
.+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...|+++.. .+.
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 8864 3456788889999999999999999999999875 45567888999999999999999999998872 111
Q ss_pred ----hhHHHHHHHHHhc----------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 371 ----ILLNTMITVYSSC----------GRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 371 ----~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
..+......+... |++++|...|+++.+ .+..++..+...|...|++++|.+.|++..+.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1234445677777 999999999998864 35678999999999999999999999999986
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9.3e-22 Score=187.10 Aligned_cols=330 Identities=13% Similarity=0.031 Sum_probs=246.6
Q ss_pred HHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH
Q 010961 121 TARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 121 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
.+...+..... | +...+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|+++.|...++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444443 2 4567888889999999999999999998873 344677888888888999999999999999
Q ss_pred HHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CCh----HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcch
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDD----FCLSALISGYANCGKMNDARRVFDRTTDTSSVM 271 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (496)
+.+.++. +..++..+..+|...|++++|...|+++.+ |+. ..+..+...+.. ..
T Consensus 86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~ 145 (450)
T 2y4t_A 86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QR 145 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HH
Confidence 8887644 567788888888888999999888888765 332 444444443221 12
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+..++..+..+|..
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334556777888888888888887653 4567777788888888888888888888887753 4456778888888888
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHH------------HHHHHhcCCHHHHHHHHhhCCC--CC-----hhhHHHHHH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTM------------ITVYSSCGRIEDAKHIFRTMPN--KS-----LISWNSMIV 409 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~l~~ 409 (496)
.|++++|...|+++. +.+...+..+ ...+...|++++|...|+++.+ |+ ...|..++.
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 888888888888776 2333444444 7889999999999999999864 44 347888999
Q ss_pred HHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...++.+.+.... +...+..+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 9999999999999999998763 457889999999999999999999999999875322 456666666
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.1e-18 Score=160.54 Aligned_cols=321 Identities=12% Similarity=0.042 Sum_probs=177.9
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 214 (496)
..+..+...+...|++++|++.|+++.+. .+.+...+..+...+...|+++.|...++.+.+..+. +...+..+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 78 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence 34555566666666666666666666552 2233455666666666666666666666666655432 445566666
Q ss_pred HHHHhcCChhhHHHHHHhcCC--C---C-hHHHHHH------------HHHHHhcCChhHHHHHHHhcCC---CCcchHH
Q 010961 215 NLYGKCGDFNSANQVLNMMKE--P---D-DFCLSAL------------ISGYANCGKMNDARRVFDRTTD---TSSVMWN 273 (496)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~--~---~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 273 (496)
..+...|++++|...++++.+ | + ...+..+ ...+...|++++|.+.++++.+ .+...+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 666666777777666666554 3 1 1122222 3444455555555555554332 2233444
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353 (496)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (496)
.+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...-
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~---- 232 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK---- 232 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH----
Confidence 44445555555555555555544432 333444444444444455555555555444443211 111111000000
Q ss_pred ChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-----hhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 354 MPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSL-----ISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
.......+...+.+.|++++|...++++.+ |+. ..+..+...+...|++++|...+++
T Consensus 233 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 233 ---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 000011224556667777777777766553 322 2345577888888899999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK 483 (496)
Q Consensus 427 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (496)
..+.. +.+..++..+...+...|++++|...++.+.+... -+...+..+..+...
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 298 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 88752 44677888888888888999999999888877542 235566666665544
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=6.9e-17 Score=162.54 Aligned_cols=379 Identities=12% Similarity=0.140 Sum_probs=282.7
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhcc-CCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGF 82 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 82 (496)
||......++++...|.+.+|..+++.+.-.+- ..+.....+.|+....+. +..+..+..++...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 566678889999999999999999999994431 011222666677777666 5566665555554322 45577888
Q ss_pred HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 83 MKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
...|.+++|..+|++.... ....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 8999999999999997532 222233332 6688999999988774 4568889999999999999999998553
Q ss_pred chhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHH
Q 010961 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (496)
-|...|..++.++.+.|+++++.+.+....+... ++...+.++.+|++.+++++...++ ..++...|.
T Consensus 1132 -------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQ 1199 (1630)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHH
Confidence 4566788899999999999999999988777653 3333445888899988888655443 456777788
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhh
Q 010961 243 ALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH 322 (496)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 322 (496)
.+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 8889999999999999999885 48889999999999999999998866 345788888888888888888
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccC---chhhHHHHHHHHHh--cCCHHHHHHHHhhCC
Q 010961 323 GKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVY---DTILLNTMITVYSS--CGRIEDAKHIFRTMP 397 (496)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 397 (496)
|...... +..++..+..++..|.+.|.+++|+.+++..... +...|+-+...|.+ -++..++.+.|..-.
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 8876543 3345566778888999999999999999877633 34456666666655 345666666666544
Q ss_pred C--------CChhhHHHHHHHHHhCCChhhHHH
Q 010961 398 N--------KSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 398 ~--------~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
. .+...|.-++..|.+.|+++.|..
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3 245678888999999999998873
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1.6e-19 Score=162.92 Aligned_cols=236 Identities=9% Similarity=0.081 Sum_probs=74.9
Q ss_pred hcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC-
Q 010961 53 RCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR- 131 (496)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 131 (496)
+.|+.++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 556777777777777444 37777777777777777777777543 5555777777777777777777776665554
Q ss_pred -CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHH
Q 010961 132 -RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 132 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 210 (496)
+++.+.+.++.+|.+.|+++++.++++ .|+..++..+...|...|.++.|...|..+ ..|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp ------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT---------TCH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 345667777777777777777666652 245556666666777777777777776644 356
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHH
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL 290 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 290 (496)
..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 666666666677777666666663 55666666666666666666655555433 233333345566666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 291 LFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 291 ~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
+++...... +.....|+.+.-.++
T Consensus 229 lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 229 MLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 666655433 333444444444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2e-18 Score=158.62 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=38.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDA----STLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR 352 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (496)
..+...|++++|...+++..+.. +.+. ..+..+...+...|++++|...++.+.+.. +.+..++..+..++...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 34445555555555555544432 1111 112223334444455555555554444432 22334444444444444
Q ss_pred CChhhHHHHHHhcc
Q 010961 353 GMPSDACKLFSELK 366 (496)
Q Consensus 353 ~~~~~a~~~~~~~~ 366 (496)
|++++|...|++..
T Consensus 320 g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQ 333 (359)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.5e-19 Score=161.74 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=57.4
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010961 84 KLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 163 (496)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark- 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK- 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-
Confidence 345555666666555333 25555666666666666666555432 3444555555555555555555554444443
Q ss_pred hhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHH
Q 010961 164 LVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSA 243 (496)
Q Consensus 164 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (496)
..+++.+...++.+|.+.|+++++.++++ .|+..++..+...|...|.+++|..+|..+ ..|..
T Consensus 90 ----~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 90 ----KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHH
T ss_pred ----hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 22334445555555555555555554442 134445555555555555555555555544 24555
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhH
Q 010961 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 323 (496)
++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.| .....++..|.+.|.++++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHH
Confidence 5555555555555555555542 34455555555555555555533222211 112 1222344444444444444
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 324 KQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
..+++...... +-....|+.+..+|+
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 44444444332 223333444443333
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=8.1e-17 Score=154.42 Aligned_cols=344 Identities=11% Similarity=0.010 Sum_probs=178.2
Q ss_pred HHHHHHHHHHh----cCChHHHHHHhhhCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHH
Q 010961 43 IANRLLQMYMR----CGNPTDALLLFDEMPR-RNCFSWNAMIEGFMK----LGHKEKSLQLFNVMPQ-KNDFSWNMLISG 112 (496)
Q Consensus 43 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~ 112 (496)
.+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|.+.|++..+ .++..+..|...
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 120 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVM 120 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55556666666 6666667666665543 345556666666666 6666666666665544 344455555555
Q ss_pred HHh----cCChhHHHHHHhhcCCC-CcccHHHHHHHHHH----cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHH
Q 010961 113 FAK----AGELKTARTLFNDMPRR-NAIAWNSMIHCYVR----NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACA 183 (496)
Q Consensus 113 ~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 183 (496)
|.. .+++++|.++|++..++ +..++..|...|.. .+++++|++.|++..+. .+...+..+...+.
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYS 194 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHh
Confidence 555 45566666666555432 34455555555554 45555555555555441 13344444444444
Q ss_pred c----cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChh
Q 010961 184 D----LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK----CGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255 (496)
Q Consensus 184 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (496)
. .++.++|.+.+++..+.| +...+..+...|.. .+++++|..+|++..+.
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------- 252 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------------------- 252 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-------------------
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------------
Confidence 4 455555555555555443 23334444444443 44555555555443321
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----cchhhHHHH
Q 010961 256 DARRVFDRTTDTSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL-----GFLEHGKQV 326 (496)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-----~~~~~a~~~ 326 (496)
.++..+..+...|.. .+++++|+..|++..+.| +...+..+...+... ++.++|...
T Consensus 253 -----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 253 -----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp -----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 122333334444444 455555555555554432 222333333333333 455555555
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcC---ChhhHHHHHHhcc-cCchhhHHHHHHHHHh----cCCHHHHHHHHhhCCC
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRG---MPSDACKLFSELK-VYDTILLNTMITVYSS----CGRIEDAKHIFRTMPN 398 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 398 (496)
+....+.| +...+..+...|...| ++++|++.|++.. ..++..+..+...|.. .+++++|...|++..+
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 55555543 2223344444444433 4455555555444 2234444445555544 4555555555555443
Q ss_pred -CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCC
Q 010961 399 -KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 399 -~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 431 (496)
.+...+..|...|.. .++.++|...|++..+.+
T Consensus 396 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 396 QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 345566677777776 677888888888877765
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=6.4e-17 Score=155.16 Aligned_cols=348 Identities=10% Similarity=-0.007 Sum_probs=233.7
Q ss_pred cCChhHHHHHHhhcCC-CCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHc----cc
Q 010961 116 AGELKTARTLFNDMPR-RNAIAWNSMIHCYVR----NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACAD----LA 186 (496)
Q Consensus 116 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~ 186 (496)
.+++++|..+|++..+ .+..++..|...|.. .+++++|++.|++.... + +...+..+...+.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCC
Confidence 4444444444444332 233444444455554 45555555555554441 1 23333344444444 44
Q ss_pred hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh----cCChhhHHHHHHhcCC-CChHHHHHHHHHHHh----cCChhHH
Q 010961 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK----CGDFNSANQVLNMMKE-PDDFCLSALISGYAN----CGKMNDA 257 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 257 (496)
++++|...++...+.| +...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 5555555555555544 33344445555554 4566666666655443 344555555555555 5666667
Q ss_pred HHHHHhcCC-CCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----ccchhhHHHHHH
Q 010961 258 RRVFDRTTD-TSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS----LGFLEHGKQVHG 328 (496)
Q Consensus 258 ~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 328 (496)
.++|++..+ .++.++..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 766666544 345567777777776 789999999999998765 34455556666665 789999999999
Q ss_pred HHHHcCCCchHHHHHHHHHHHHhc-----CChhhHHHHHHhcc-cCchhhHHHHHHHHHhcC---CHHHHHHHHhhCCC-
Q 010961 329 HACKVGVIDDVIVASALLDTYSKR-----GMPSDACKLFSELK-VYDTILLNTMITVYSSCG---RIEDAKHIFRTMPN- 398 (496)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~- 398 (496)
...+.| ++..+..+...|... +++++|...|++.. ..++..+..+...|...| +.++|...|++..+
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 998765 445667788888877 89999999999887 445667778888887766 78999999998775
Q ss_pred CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHHHHHHHcCCC-c
Q 010961 399 KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIGLD-S 469 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~ 469 (496)
.+...+..+...|.. .+++++|.+.|++..+.| ++..+..|...|.. .+++++|...++...+.+.. |
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 567888899999998 899999999999999876 56678888888887 89999999999999887754 2
Q ss_pred -hHHHHHHHHHHH
Q 010961 470 -DQIISTSLVDFY 481 (496)
Q Consensus 470 -~~~~~~~l~~~~ 481 (496)
++.....|...+
T Consensus 438 ~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 438 GTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHTTSC
T ss_pred CCHHHHHHHHhcC
Confidence 444444444443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.6e-18 Score=154.34 Aligned_cols=284 Identities=12% Similarity=0.031 Sum_probs=159.1
Q ss_pred CCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHHHHH
Q 010961 168 LQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSAL 244 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 244 (496)
.+.+...+..+...+...|+++.|.++++.+.+..+. +...+..++..+...|++++|..+++++.+ .+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3444445555556666666666666666666655432 334444555555666666666666665542 233444455
Q ss_pred HHHHHhcC-ChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccch
Q 010961 245 ISGYANCG-KMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFL 320 (496)
Q Consensus 245 ~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 320 (496)
...+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 55555555 55555555554433 123344445555555555555555555544432 11223333344444444445
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010961 321 EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-- 398 (496)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 398 (496)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 176 ~~A~~~~~~al~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALSIA--------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHTTC--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55554444444432 22333444444445555555555444444321
Q ss_pred ----------CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 399 ----------KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 399 ----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
....++..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+.. +
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-R 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-S
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-C
Confidence 234577888888888888888888888887753 4466778888888888888888888888776643 2
Q ss_pred chHHHHHHHHHHH-HhcCCh
Q 010961 469 SDQIISTSLVDFY-CKCGFI 487 (496)
Q Consensus 469 ~~~~~~~~l~~~~-~~~g~~ 487 (496)
.+...+..+..++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 2566777777777 445544
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.8e-17 Score=149.14 Aligned_cols=273 Identities=14% Similarity=-0.019 Sum_probs=159.9
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHH
Q 010961 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212 (496)
Q Consensus 133 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 212 (496)
+...+..+...+...|++++|+++|+++.+. .+.+...+..++..+...|+++.|...++++.+.... +...+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 3444555555555555555555555555442 1122233344444555555555555555555554322 3445555
Q ss_pred HHHHHHhcC-ChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCH
Q 010961 213 LVNLYGKCG-DFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNED 285 (496)
Q Consensus 213 l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 285 (496)
+...+...| ++++|...+++..+ .+...|..+...+...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 555555666 56666666655443 2344556666666666666666666665443 2345666677778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcC--------CCchHHHHHHHHHHHHhcCChhh
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVG--------VIDDVIVASALLDTYSKRGMPSD 357 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 357 (496)
++|...+++..+.. +.+...+..+...+...|++++|...+..+.+.. .+....++..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888877653 4456677777777778888888888887776632 12334567777777777777777
Q ss_pred HHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 010961 358 ACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGL 411 (496)
Q Consensus 358 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 411 (496)
|...+++.. +.+...+..+...+...|++++|...|++..+ | +...+..+..++
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 777777655 33444555555555555555555555555543 2 333444444444
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.7e-16 Score=153.85 Aligned_cols=408 Identities=11% Similarity=-0.009 Sum_probs=209.6
Q ss_pred hHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 010961 28 HLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KN 102 (496)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 102 (496)
++..++.. |....+|..++. +.+.|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|+++.. |+
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444444 555557877777 4677888888888888765 3 455777888888888888888888888876 66
Q ss_pred hhhHHHHHHHH-HhcCChhHHHH----HHhhcC-----C-CCcccHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 010961 103 DFSWNMLISGF-AKAGELKTART----LFNDMP-----R-RNAIAWNSMIHCYVR---------NGFAREAVRLFKELNS 162 (496)
Q Consensus 103 ~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~ 162 (496)
...|...+... ...|+++.|.+ +|+... . ++...|...+....+ .|++++|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66666666432 34566666554 555432 1 234566666665554 6778888888888776
Q ss_pred chhccCCcCHHHHHHHHHHH-------------HccchHHHHHHHHHHHHH------cC---CCcc--------hhHHHH
Q 010961 163 DLVERLQCDAFILATVIGAC-------------ADLAALEYGKQIHSHILV------NG---LDFD--------SVLGSS 212 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~ 212 (496)
. +..+....|....... ...+++..|..++..+.. .. ++|+ ...|..
T Consensus 159 ~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 159 N---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp S---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred c---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 2 1111122332222111 122344444444443211 10 1121 112222
Q ss_pred HHHHHHhc----CCh----hhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHh
Q 010961 213 LVNLYGKC----GDF----NSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS 281 (496)
Q Consensus 213 l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 281 (496)
.+...... ++. .++..+|++... .+...|..++..+.+.. .....
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~------------------------~~~~~ 291 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSS------------------------KLLAE 291 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------------HHHHT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------------------hhhhh
Confidence 22211111 111 133334444332 12334444444333200 00001
Q ss_pred CCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 282 NNEDT-------EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 282 ~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
.|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+........+|..++..+.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 34443 44444444443111223444444444444455555555555555443211011244444444445555
Q ss_pred hhhHHHHHHhcccC---chhhHHHHHHH-HHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHH
Q 010961 355 PSDACKLFSELKVY---DTILLNTMITV-YSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNM 427 (496)
Q Consensus 355 ~~~a~~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 427 (496)
+++|.++|++.... +...+...... +...|+.++|..+|++..+ | +...|..++..+.+.|+.++|..+|++.
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 55555555544411 11111111111 2235666666666665543 3 4567777777777888888888888887
Q ss_pred HhCC-CCCC--HHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 428 NKLD-LRMD--KFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 428 ~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
...+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7753 1232 336777777777778888888888777653
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.7e-18 Score=158.54 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=190.4
Q ss_pred cCChhhHHH-HHHhcCC--C-----ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHH
Q 010961 220 CGDFNSANQ-VLNMMKE--P-----DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEA 288 (496)
Q Consensus 220 ~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 288 (496)
.|++++|.. .+++..+ | +...+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 356666666 6665442 1 234466666677777777777777766543 2345666777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHH--------------HHHHHHhcCC
Q 010961 289 LLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASA--------------LLDTYSKRGM 354 (496)
Q Consensus 289 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~ 354 (496)
+..++++.+.. +.+..++..+...+...|++++|...+..+.+............ .+..+...|+
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence 77777776653 44566677777777777777777777777776542221111111 1223337788
Q ss_pred hhhHHHHHHhcc---cC--chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHH
Q 010961 355 PSDACKLFSELK---VY--DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCN 426 (496)
Q Consensus 355 ~~~a~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 426 (496)
+++|...|+++. +. +..++..+...+...|++++|...++++.+ .+..+|..+...+...|++++|...+++
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888776 22 456777888888888888888888887653 3567889999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc----------hHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 427 MNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS----------DQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 427 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+.+.. +.+...+..+..++.+.|++++|...++.+.+..... ...++..+..+|.+.|+.++|..+.+
T Consensus 277 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 277 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 88863 4567889999999999999999999999887643221 16789999999999999999998765
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=5.4e-16 Score=150.25 Aligned_cols=402 Identities=11% Similarity=0.062 Sum_probs=275.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHHHHHHH-
Q 010961 71 NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCY- 144 (496)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~- 144 (496)
+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|+++.. |+...|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 6678888888 4788999999999999876 4 456788889999999999999999999876 6666666666533
Q ss_pred HHcCCHHHHHH----HHHHHHHchhccCCc-CHHHHHHHHHHHHc---------cchHHHHHHHHHHHHHcCCCcchhHH
Q 010961 145 VRNGFAREAVR----LFKELNSDLVERLQC-DAFILATVIGACAD---------LAALEYGKQIHSHILVNGLDFDSVLG 210 (496)
Q Consensus 145 ~~~~~~~~a~~----~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 210 (496)
...|+.++|.+ +|+..... -|..| +...|...+..... .|+++.|..+|+..++.........|
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~--~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDK--IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHH--TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 34577666655 66666553 23343 45566666665544 68889999999988873111112233
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHh------cC-------CCC--------c
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDR------TT-------DTS--------S 269 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~-------~~~--------~ 269 (496)
..........|. ..+..++.. +.+++..|..++.. .. .|+ .
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 322221111111 111111111 12233334333332 11 111 1
Q ss_pred chHHHHHHHHHhC----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------ccchh-------hHHHHH
Q 010961 270 VMWNSMISGYISN----NED----TEALLLFHKMRRNGVLEDASTLASVLSACSS-------LGFLE-------HGKQVH 327 (496)
Q Consensus 270 ~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 327 (496)
..|...+...... ++. ..+..+|++.... .+.+...|..+...+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 3444444332221 232 4778889888875 34567777777777764 68887 899999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCc-h-hhHHHHHHHHHhcCCHHHHHHHHhhCCCC---C
Q 010961 328 GHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VYD-T-ILLNTMITVYSSCGRIEDAKHIFRTMPNK---S 400 (496)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 400 (496)
+...+.-.+.+...+..++..+.+.|++++|..+|+++. .|+ + ..|..++..+.+.|++++|.++|++..+. +
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence 999873335568889999999999999999999999988 343 3 47888888889999999999999998762 2
Q ss_pred hhhHHHHHHH-HHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCC-Cch--HHHHHH
Q 010961 401 LISWNSMIVG-LSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGL-DSD--QIISTS 476 (496)
Q Consensus 401 ~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~ 476 (496)
...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ..+|..
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 2233322222 336899999999999988762 44678999999999999999999999999988643 333 458888
Q ss_pred HHHHHHhcCChHHHHHhhh
Q 010961 477 LVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~ 495 (496)
.+....+.|+.+.+.++.+
T Consensus 469 ~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 8888889999999988764
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=5.5e-15 Score=149.00 Aligned_cols=375 Identities=12% Similarity=0.071 Sum_probs=219.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CC-----hhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcC
Q 010961 75 WNAMIEGFMKLGHKEKSLQLFNVMPQ-KN-----DFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNG 148 (496)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 148 (496)
-...+++|+..|.+.+|+++++++.- |+ ...-+.++.+..+. +..+..+..++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 34455556666666666666666542 21 12233344433333 3344444444443222 333555666666
Q ss_pred CHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHH
Q 010961 149 FAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQ 228 (496)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 228 (496)
.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|..+..++...|++++|..
T Consensus 1064 lyEEAf~IYkKa~~--------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV--------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CHHHHHHHHHHcCC--------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 66666666666422 111112221 14556666666665431 35566666666666677777666
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010961 229 VLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
.|.+. .|...|..++.++.+.|++++|.+.+....+ +++...+.++.+|++.+++++..... . .++...
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 66554 4455566666666667777777666655443 22223334666666666666422221 1 334445
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCH
Q 010961 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 307 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (496)
+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHH
Confidence 555666666677777777776653 25666667777777777777776654 4456666666667677777
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHH
Q 010961 387 EDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN--ISSLELGEQVFARVTI 464 (496)
Q Consensus 387 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 464 (496)
..|...... ...+...+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -++..++.++|.. +
T Consensus 1267 ~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~--r 1342 (1630)
T 1xi4_A 1267 RLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--R 1342 (1630)
T ss_pred HHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 777665554 23345566688889999999999999998877553 3344456555555554 3444444444442 2
Q ss_pred cCCCc------hHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 465 IGLDS------DQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 465 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
.+++| +...|..++..|.+.|+++.|...+
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 23333 5678999999999999999998543
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.2e-17 Score=154.20 Aligned_cols=94 Identities=12% Similarity=-0.119 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
.+..+...+.+.|++++|+..|+++.+. .+.+...+..+..++...|+++.|...++.+.+..+. +..++..+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~ 140 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAV 140 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 3444444555555555555555554441 1223334444444444555555555555544444322 3344444444
Q ss_pred HHHhcCChhhHHHHHHhcC
Q 010961 216 LYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~ 234 (496)
.+...|++++|...++++.
T Consensus 141 ~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555544433
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=3.5e-18 Score=157.57 Aligned_cols=255 Identities=9% Similarity=0.021 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 239 FCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3466666666667777777777766543 335567777777777777777777777776642 344666777777777
Q ss_pred cccchhhHHHHHHHHHHcCCCc---------hHHHHHHHHHHHHhcCChhhHHHHHHhcc---cC--chhhHHHHHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVID---------DVIVASALLDTYSKRGMPSDACKLFSELK---VY--DTILLNTMITVYS 381 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~--~~~~~~~l~~~~~ 381 (496)
..|++++|...++++.+..... ...++..+...+...|++++|...|+++. +. ++.++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 7777777777777776643110 11223345667777888888888887776 22 5667778888888
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 382 SCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
..|++++|...|+++.+ .+..+|..+...|...|++++|...++++.+.. +.+..++..+..+|...|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888887654 356789999999999999999999999998863 44578899999999999999999999
Q ss_pred HHHHHHcCCC-----------chHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 459 FARVTIIGLD-----------SDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 459 ~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
++.+.+.... .+..++..|..++...|+.+.|.++.+
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9988764311 136789999999999999999988764
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=5.8e-17 Score=149.37 Aligned_cols=227 Identities=9% Similarity=-0.077 Sum_probs=120.6
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHH
Q 010961 133 NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSS 212 (496)
Q Consensus 133 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 212 (496)
+...+..+...+.+.|++++|++.|+++.+. .+.+..++..+..++...|+++.|...++++.+..+. +..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 3445666666666777777777777666652 2234556666666666666666666666666665432 4556666
Q ss_pred HHHHHHhcCChhhHHHHHHhcCCCCh-------------HHHHHHHHHHHhcCChhHHHHHHHhcCC--C---CcchHHH
Q 010961 213 LVNLYGKCGDFNSANQVLNMMKEPDD-------------FCLSALISGYANCGKMNDARRVFDRTTD--T---SSVMWNS 274 (496)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~ 274 (496)
+..+|...|++++|...++++.+.++ ..+..+...+...|++++|.+.|+++.+ | +..++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 66666666777777666666553111 1112234444444555555555544332 1 2344555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 5555555555555555555555432 3334455555555555555555555555555542 2234455555555555555
Q ss_pred hhhHHHHHHhcc
Q 010961 355 PSDACKLFSELK 366 (496)
Q Consensus 355 ~~~a~~~~~~~~ 366 (496)
+++|...|++..
T Consensus 297 ~~~A~~~~~~al 308 (365)
T 4eqf_A 297 YREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=5.4e-17 Score=147.06 Aligned_cols=260 Identities=10% Similarity=0.013 Sum_probs=170.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHH
Q 010961 206 DSVLGSSLVNLYGKCGDFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGY 279 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 279 (496)
+...+..+...+...|++++|..+|+++.+ .+...+..+...+...|++++|...|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344556677777788888888888877653 3455666677777777777777777776543 2345666666777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHhcccchhhHHHHHHHHHHcCCCchHHHHHH
Q 010961 280 ISNNEDTEALLLFHKMRRNGVLEDASTLASV--------------LS-ACSSLGFLEHGKQVHGHACKVGVIDDVIVASA 344 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (496)
...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...+..+.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 77777777777777776642 1122222222 11 2445555555555555555543 223444445
Q ss_pred HHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLF 424 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 424 (496)
+...+...|++++|...+++... ....+..++..+...+...|++++|...+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVE----------------------------LRPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH----------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555555443321 01134567888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-----------hHHHHHHHHHHHHhcCChHHHHHh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-----------DQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
+++.+.. +.+...+..+..++...|++++|...++.+.+..... +...+..+..++.+.|+.++|.++
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9887753 4467788889999999999999999999887754332 578888999999999999999988
Q ss_pred hhC
Q 010961 494 LMQ 496 (496)
Q Consensus 494 ~~e 496 (496)
+++
T Consensus 309 ~~~ 311 (327)
T 3cv0_A 309 YAQ 311 (327)
T ss_dssp TTC
T ss_pred HHH
Confidence 753
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=5e-16 Score=137.41 Aligned_cols=266 Identities=10% Similarity=0.003 Sum_probs=188.4
Q ss_pred HHHhcCChhhHHHHHHhcCCCCh----HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHH
Q 010961 216 LYGKCGDFNSANQVLNMMKEPDD----FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLL 291 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (496)
-....|++..|+..++.....++ .....+.++|...|+++.|...++....|+..++..+...+...++.++|++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34456777777777776654322 23345667777777777777777665445556777777788888888888888
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cC
Q 010961 292 FHKMRRNGVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY 368 (496)
Q Consensus 292 ~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 368 (496)
++++...+..| +...+..+...+...|++++|...++. +.+...+..++.++.+.|++++|.+.|+++. .|
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 161 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE 161 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 88887766545 444555556777888888888888876 4566777888888888888888888888877 33
Q ss_pred chhhH---HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010961 369 DTILL---NTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASV 442 (496)
Q Consensus 369 ~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 442 (496)
+.... ...+..+...|++++|..+|+++.+ .+...++.+..++.+.|++++|...+++..+.. +-++.++..+
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l 240 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINL 240 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 32211 1223334455788888888888764 466788889999999999999999999988763 4477788888
Q ss_pred HHHHhccCchhh-HHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 443 ISACANISSLEL-GEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 443 ~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
+..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..-
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 888888898865 578888887754 44332 34456667777776543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=5.8e-16 Score=140.23 Aligned_cols=225 Identities=12% Similarity=-0.032 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 214 (496)
..+..+...+...|++++|..+|+++.+. .+.+...+..+..++...|+++.|...++++.+.... +..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHH
Confidence 34445555555555555555555555542 2223444455555555555555555555555554322 344455555
Q ss_pred HHHHhcCChhhHHHHHHhcCC--CC-hHHHHHH--------------HH-HHHhcCChhHHHHHHHhcCC---CCcchHH
Q 010961 215 NLYGKCGDFNSANQVLNMMKE--PD-DFCLSAL--------------IS-GYANCGKMNDARRVFDRTTD---TSSVMWN 273 (496)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 273 (496)
..+...|++++|...++++.+ |+ ...+..+ .. .+...|++++|.+.++++.+ .+...+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 555555555555555555432 11 1111111 11 13444445555555544332 2234555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 274 SMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG 353 (496)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (496)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 55555555566666665555555432 2334455555555555555555555555555543 223444555555555555
Q ss_pred ChhhHHHHHHhcc
Q 010961 354 MPSDACKLFSELK 366 (496)
Q Consensus 354 ~~~~a~~~~~~~~ 366 (496)
++++|.+.+++..
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 5555555555443
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.9e-18 Score=165.61 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhC-------CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTM-------PNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
.+|+++|++|++.|++++|.++|++| ..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35666666666666666666666443 25899999999999999999999999999999999999999999999
Q ss_pred HHHhccCch-hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHh
Q 010961 444 SACANISSL-ELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 444 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++...++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999875 78889999999999999999999888777776655554443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=8.7e-16 Score=135.84 Aligned_cols=252 Identities=10% Similarity=-0.022 Sum_probs=158.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHchhccCCcCH--HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHH
Q 010961 141 IHCYVRNGFAREAVRLFKELNSDLVERLQCDA--FILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYG 218 (496)
Q Consensus 141 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (496)
++-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 3455667888888888877644 44543 3445566777888888877765543 23446667777777777
Q ss_pred hcCChhhHHHHHHhcC----CCC-hHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHH
Q 010961 219 KCGDFNSANQVLNMMK----EPD-DFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFH 293 (496)
Q Consensus 219 ~~~~~~~a~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 293 (496)
..|+.++|.+.++++. .|+ ...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7788888888887753 243 44555566777777777777777777 3455667777777777777777777777
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCch
Q 010961 294 KMRRNGVLEDASTL---ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDT 370 (496)
Q Consensus 294 ~m~~~g~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 370 (496)
++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++...|++++|...|++....+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 776642 432211 11223333446667777777666665 24455666666666666666666666666543111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhh-HHHHHHHHHhCCCCCCH
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIE-ALDLFCNMNKLDLRMDK 436 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~~p~~ 436 (496)
..+..++..++..+...|+..+ +.++++++.+. .|+.
T Consensus 231 ---------------------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~ 268 (291)
T 3mkr_A 231 ---------------------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSH 268 (291)
T ss_dssp ---------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTC
T ss_pred ---------------------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCC
Confidence 1245567777777777777765 46777777764 4543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.6e-15 Score=143.47 Aligned_cols=368 Identities=10% Similarity=-0.036 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC-----------C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----------
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR-----------R-NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---------- 100 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 100 (496)
.|+.|...+...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 788888889999999999888876532 1 245788888888888888888888776542
Q ss_pred -CChhhHHHHHHHHHhc--CChhHHHHHHhhcCC--C-CcccHHHHHHH---HHHcCCHHHHHHHHHHHHHchhccCCc-
Q 010961 101 -KNDFSWNMLISGFAKA--GELKTARTLFNDMPR--R-NAIAWNSMIHC---YVRNGFAREAVRLFKELNSDLVERLQC- 170 (496)
Q Consensus 101 -~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~~~p- 170 (496)
....++..+..++... +++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++..+ +.|
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-----l~p~ 207 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-----LNPD 207 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-----HCSS
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----cCCc
Confidence 1234555555444443 467888888877653 3 33444444444 3345667777777777766 333
Q ss_pred CHHHHHHHHHHHH----ccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-hHHHHH
Q 010961 171 DAFILATVIGACA----DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-DFCLSA 243 (496)
Q Consensus 171 ~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ 243 (496)
+...+..+...+. ..++++.|.+.+++.....+. +..++..+...|...|++++|...+++..+ |+ ..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 3344444433333 345667777887777766543 556677777788888888888888877663 33 344554
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhH
Q 010961 244 LISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHG 323 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 323 (496)
+..+|...+....+. . ...........+.++.|...++...+.. +.+...+..+...+...|++++|
T Consensus 287 lg~~y~~~~~~~~~~------~------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL------R------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhH------H------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 444443211100000 0 0000000001122345555555554432 22333445555556666666666
Q ss_pred HHHHHHHHHcCCCchHH--HHHHHHH-HHHhcCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCC-
Q 010961 324 KQVHGHACKVGVIDDVI--VASALLD-TYSKRGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMP- 397 (496)
Q Consensus 324 ~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 397 (496)
...|+++.+....+... .+..+.. .+...|+.++|+..|.+... |+....... ...+.++++...
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHH
Confidence 66666665544333221 1222222 12345666666666666552 222111111 112222332222
Q ss_pred --CCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCCCHHH
Q 010961 398 --NKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRMDKFS 438 (496)
Q Consensus 398 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~ 438 (496)
..+..+|..+...|...|++++|++.|++..+.| ..|+..+
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 2356778888888888888888888888887754 2344433
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.7e-14 Score=137.74 Aligned_cols=318 Identities=11% Similarity=-0.002 Sum_probs=141.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhc---cCCc-CHHHHHHHHHHHH--ccchHHHHHHHHHHHHHcCCCcchhH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVE---RLQC-DAFILATVIGACA--DLAALEYGKQIHSHILVNGLDFDSVL 209 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~ 209 (496)
+|+.+..+|...|++++|...+++..+.... ...+ ...++.....++. ..+++++|...|++..+..+. ++..
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~ 174 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEF 174 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHH
Confidence 4555555555555555555555544331000 0011 1223333322222 233555666666655554332 2333
Q ss_pred HHHHHHH---HHhcCChhhHHHHHHhcCC--C-ChHHHHHHHHHHHh----cCChhHHHHHHHhcCC---CCcchHHHHH
Q 010961 210 GSSLVNL---YGKCGDFNSANQVLNMMKE--P-DDFCLSALISGYAN----CGKMNDARRVFDRTTD---TSSVMWNSMI 276 (496)
Q Consensus 210 ~~~l~~~---~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~ 276 (496)
+..+..+ +...++.++|+..+++..+ | +...+..+...+.. .+++++|.+.+++... .+..++..+.
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 3333322 2234555555555554432 2 23333333333322 3445556666655432 2344566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------------------ccchhhHHHHHHHHHHcCCCc
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-------------------LGFLEHGKQVHGHACKVGVID 337 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~ 337 (496)
..|...|++++|+..+++..+.. +-+...+..+...+.. .+..+.|...+....+.. +.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cc
Confidence 66667777777777776666542 2233344444333321 123455566666655543 23
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhcc--cCchh----hHHHHHH-HHHhcCCHHHHHHHHhhCCC--CChhhHHHHH
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSELK--VYDTI----LLNTMIT-VYSSCGRIEDAKHIFRTMPN--KSLISWNSMI 408 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~----~~~~l~~-~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~ 408 (496)
+...+..+...|...|++++|+..|++.. .++.. .+..+.. .....|++++|+..|++..+ |+......
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-- 410 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-- 410 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--
Confidence 34455666667777777777777776655 12211 1122221 22355666666666665543 22211111
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
....+.+++++..+.. +.+..+|..+..+|...|++++|.+.+++..+.+
T Consensus 411 -------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 -------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp -------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred -------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1122333444443332 4455667777777777777777777777666543
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=162.39 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhc-------CCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRT-------TDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASV 310 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 310 (496)
..+|+++|++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346777777777777777777777543 3578999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-hhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-----CchhhHHHHHHHHHhcC
Q 010961 311 LSACSSLGFL-EHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-----YDTILLNTMITVYSSCG 384 (496)
Q Consensus 311 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 384 (496)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+.+ +...+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999998777665444444433333331 11334445556665544
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=9.7e-15 Score=137.81 Aligned_cols=334 Identities=14% Similarity=0.071 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCCh---hHHHHHHhhcCCCCcccHHHHHHHHHHcC-----CHH
Q 010961 81 GFMKLGHKEKSLQLFNVMPQ-KNDFSWNMLISGFAKAGEL---KTARTLFNDMPRRNAIAWNSMIHCYVRNG-----FAR 151 (496)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~ 151 (496)
.+.+.|++++|+++|++..+ .+...+..|...|...|+. ++|.++|++..+.++.++..|...+...+ +++
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 33444444444444444332 2223333333334444444 55555555554444444555544333333 445
Q ss_pred HHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHH---HHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChh----
Q 010961 152 EAVRLFKELNSDLVERLQCDAFILATVIGACADLAALE---YGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFN---- 224 (496)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 224 (496)
+|++.|++.... +. |+ .+..+...+...+..+ .+.+.+......| +......|...|...+.++
T Consensus 92 ~A~~~~~~Aa~~---g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 92 EAESLLKKAFAN---GE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHT---TC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred HHHHHHHHHHHC---CC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 555555555441 11 11 2333333333333222 2223333333333 2334444555555555333
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHhcC---ChhHHHHHHHhcCCCC---cchHHHHHHHHHhC----CCHHHHHHHHHH
Q 010961 225 SANQVLNMMKEPDDFCLSALISGYANCG---KMNDARRVFDRTTDTS---SVMWNSMISGYISN----NEDTEALLLFHK 294 (496)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~----~~~~~a~~~~~~ 294 (496)
.+..+++.....++..+..+...|...| +.++|.+.|++..+.+ ...+..+...|... +++++|+..|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 2333344444444344455555555555 4555555554443311 11223344444322 455555555555
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-----ChhhHHHHHHhcc
Q 010961 295 MRRNGVLEDASTLASVLSA-C--SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG-----MPSDACKLFSELK 366 (496)
Q Consensus 295 m~~~g~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 366 (496)
.. .| +...+..+... + ...++.++|...|.+..+.| ++..+..|..+|. .| ++++|...|++..
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 44 21 22222223222 1 23455555555555555444 2333334444443 22 4555555555444
Q ss_pred cCchhhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCC
Q 010961 367 VYDTILLNTMITVYSS----CGRIEDAKHIFRTMPNK-SLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLD 431 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 431 (496)
+.++..+..+...|.. ..++++|...|++..++ +......|...|.. ..++.+|..+++...+.|
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 2233333334433333 22444555554444332 23333344444432 234444555555444444
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.2e-14 Score=137.27 Aligned_cols=342 Identities=10% Similarity=0.012 Sum_probs=179.5
Q ss_pred HHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCCh---HHHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 010961 10 RLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNP---TDALLLFDEMPRRNCFSWNAMIEGFMKLG 86 (496)
Q Consensus 10 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (496)
.+...+.+.|++++|..+|+...+.|. .. ++..|...|...|++ ++|+..|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~-A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SE-AQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CT-GGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HH-HHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 355666777888888888888877752 22 344566677777777 78888888777666667777776555554
Q ss_pred -----CHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCChhH---HHHHHhhcCC-CCcccHHHHHHHHHHcCCHHHHHHH
Q 010961 87 -----HKEKSLQLFNVMPQ-KNDFSWNMLISGFAKAGELKT---ARTLFNDMPR-RNAIAWNSMIHCYVRNGFAREAVRL 156 (496)
Q Consensus 87 -----~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 156 (496)
++++|+..|++..+ .+...+..|...|...++.++ +.+.+....+ .+..++..|...|...+.++++.+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 67778887777655 334466666666665554333 3333333332 3556666777777776654444443
Q ss_pred HHHHHHchhccCCcCHHHHHHHHHHHHccc---hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhc----CChhhHHHH
Q 010961 157 FKELNSDLVERLQCDAFILATVIGACADLA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKC----GDFNSANQV 229 (496)
Q Consensus 157 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~ 229 (496)
...+.+. -...+...+..+...+...| +.++|.+.|+...+.|.. +...+..|...|... +++++|..+
T Consensus 164 a~~~~~~---a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 164 VERICKA---ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHH---HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHH---HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 3333221 11122225555666666666 667777777776666643 333334455555433 455556655
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010961 230 LNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISG-Y--ISNNEDTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
|++.. |+ ++..+..+... + ...+++++|+..|++..+.| +...
T Consensus 240 ~~~aa-~g------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 240 LEKIA-PG------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp HHHHG-GG------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHc-CC------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 55544 22 23444444444 2 34566777777777766655 3344
Q ss_pred HHHHHHHHhccc-----chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhhHHHHHHhcc-cCchhhHHHH
Q 010961 307 LASVLSACSSLG-----FLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELK-VYDTILLNTM 376 (496)
Q Consensus 307 ~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l 376 (496)
+..+...|. .| ++++|...|.... . .++.....|...|.. ..++++|...|++.. ..++.....|
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 444444444 33 6777777776665 2 244455555555555 237777777777665 3345555556
Q ss_pred HHHHHh----cCCHHHHHHHHhhCCC
Q 010961 377 ITVYSS----CGRIEDAKHIFRTMPN 398 (496)
Q Consensus 377 ~~~~~~----~~~~~~a~~~~~~~~~ 398 (496)
...|.. ..+.++|...|+...+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 666553 3467777777766554
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-14 Score=125.63 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV--LED----ASTLAS 309 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~ 309 (496)
...+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..+++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34677788888888888888888876543 5567888888888888888888888888776421 112 467777
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCH
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 386 (496)
+...+...|++++|...+..+.+.. |+. ..+...|++++|...++... +.+...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888888888764 332 34556677888888888776 33455677788888888888
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 387 EDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 387 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
++|...++++.+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...++...
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888887754 356678888888888888888888888887753 4457778888888888888888888888776
Q ss_pred Hc
Q 010961 464 II 465 (496)
Q Consensus 464 ~~ 465 (496)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=1.5e-14 Score=122.13 Aligned_cols=203 Identities=10% Similarity=-0.041 Sum_probs=119.7
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
++..+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34556666666777777777777777666542 3445556666666666666666666666666654 334445555555
Q ss_pred HHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHH
Q 010961 348 TYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLF 424 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~ 424 (496)
++...+... .. .....|++++|+..|++..+ | +...|..+...+...|++++|+..+
T Consensus 82 ~~~~~~~~~-----------~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 141 (217)
T 2pl2_A 82 AYVALYRQA-----------ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASL 141 (217)
T ss_dssp HHHHHHHTC-----------SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhhh-----------hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 555550000 00 00001555555555555442 3 4556777777788888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
++..+.. .+...+..+..++...|++++|...++...+... .+...+..+..++.+.|++++|.+.++
T Consensus 142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8877765 6677777788888888888888888887777543 255677777888888888888877765
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.5e-14 Score=127.37 Aligned_cols=187 Identities=11% Similarity=-0.021 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHH
Q 010961 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVR 146 (496)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 146 (496)
.+|..+...+...|++++|.+.|+++.+ .+..++..+...+...|++++|.+.|+++.+ .+..++..+..++.+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 3444445555555555555555554433 2345555555666666666666666665543 245677777777888
Q ss_pred cCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhH
Q 010961 147 NGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSA 226 (496)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (496)
.|++++|.+.|+++.+ ..|+.......+..+...|+++.|...+......... +...+ .++..+...++.++|
T Consensus 124 ~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQ-----DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp TTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHH
T ss_pred hccHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHH
Confidence 8888888888888776 3454444444555556667788888888776665432 33333 355666666777777
Q ss_pred HHHHHhcCCCCh-------HHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 227 NQVLNMMKEPDD-------FCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 227 ~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
...++...+.+. ..+..+...+...|++++|...|++..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777665322 3333444444444444444444444333
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7e-14 Score=121.70 Aligned_cols=214 Identities=12% Similarity=0.025 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCC--CChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CC--------cchHHH
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKE--PDDFCLSALISGYANCGKMNDARRVFDRTTD--TS--------SVMWNS 274 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--------~~~~~~ 274 (496)
...+..+...+...|++++|...|++..+ .+...+..+..++...|++++|.+.+++..+ |+ ..+|..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44566677777777777777777766542 5566777777777777777777777776554 11 356677
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM 354 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (496)
+...+...|++++|+..|++..+. .|+. ..+...|++++|...+..+.+.. +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777763 4543 23445567777777777776653 3445566777777777777
Q ss_pred hhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 010961 355 PSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 355 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 428 (496)
+++|...+++.. +.++..+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|...+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777766 44566677777777777777777777777653 345667777777777777777777777766
Q ss_pred hC
Q 010961 429 KL 430 (496)
Q Consensus 429 ~~ 430 (496)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.8e-15 Score=133.30 Aligned_cols=244 Identities=9% Similarity=-0.038 Sum_probs=190.2
Q ss_pred hhhhccCccchhhhhhHHHHHhcc--CCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCC
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGI--LNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGH 87 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 87 (496)
......+++++|...++.+++... .|....++..+...+...|++++|+..|+++.+ .+..+|..+...+...|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 345567899999999999998742 233445888999999999999999999998864 467889999999999999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 88 KEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 88 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+++|++.|+++.+ .+..++..+...+...|++++|...|+++.+ |+.......+..+...|++++|...+++...
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999876 4678899999999999999999999999874 5555555566666788999999999988877
Q ss_pred chhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc---chhHHHHHHHHHHhcCChhhHHHHHHhcCCCChH
Q 010961 163 DLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF---DSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDF 239 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (496)
. .+++...+ .++..+...++.+.|...+....+..... +..++..+...+...|++++|...|++..+.++.
T Consensus 173 ~----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 K----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp H----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred c----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 3 33443444 46677778888899999998876544321 2567888999999999999999999998875444
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVF 261 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~ 261 (496)
.+.....++...|++++|++.+
T Consensus 248 ~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhhHHHH
Confidence 4444455666667776666554
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=5.9e-13 Score=116.94 Aligned_cols=222 Identities=9% Similarity=-0.029 Sum_probs=145.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCc--hHHHHHHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID--DVIVASALLDTY 349 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 349 (496)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.+..+ ....+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455556666666666666665542 2223345555556666666666666666665532111 122356666667
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
...|++++|.+.|++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...+++++|.+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665 34556677777777777777777777777765 2 455666777344445689999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCc---hhhHHHHHHHHHHcC-CCch------HHHHHHHHHHHHhcCChHHHHHh
Q 010961 424 FCNMNKLDLRMDKFSLASVISACANISS---LELGEQVFARVTIIG-LDSD------QIISTSLVDFYCKCGFIKMDEYY 493 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 493 (496)
++++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...+..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99988763 3456777778888888887 888888888776532 1233 25777888899999999999888
Q ss_pred hh
Q 010961 494 LM 495 (496)
Q Consensus 494 ~~ 495 (496)
++
T Consensus 244 ~~ 245 (272)
T 3u4t_A 244 WK 245 (272)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=2.2e-13 Score=115.04 Aligned_cols=195 Identities=14% Similarity=-0.014 Sum_probs=138.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010961 236 PDDFCLSALISGYANCGKMNDARRVFDRTTDT---SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLS 312 (496)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~ 312 (496)
++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 35667888999999999999999999987763 45688889999999999999999999998863 446677888888
Q ss_pred HHhcc-----------cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHH
Q 010961 313 ACSSL-----------GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYS 381 (496)
Q Consensus 313 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 381 (496)
.+... |++++|...++...+.. +.+...+..+..++...|++++|+..|++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 146 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALA-------------- 146 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------
Confidence 88888 88888888888887764 33456667777777777777777777775431
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
+. .+...+..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++
T Consensus 147 --------------~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 147 --------------LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp --------------HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred --------------cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11 455667777777777788888888888777652 34566777777778888888888777765
Q ss_pred H
Q 010961 462 V 462 (496)
Q Consensus 462 ~ 462 (496)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 4
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=7.4e-13 Score=116.27 Aligned_cols=239 Identities=8% Similarity=-0.062 Sum_probs=173.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED--ASTLASVLSACS 315 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~ 315 (496)
+......+...|++++|...|+++.+ .+...+..+...+...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34445556666666666666665543 2345778888888888999999998888887432222 334777888888
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHI 392 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 392 (496)
..|++++|...++.+.+.. +.+..++..+..+|...|++++|...|++.. +.+...+..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888864 3456778889999999999999999999887 34556677777344455699999999
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhCCC---hhhHHHHHHHHHhCC-CCCC------HHHHHHHHHHHhccCchhhHHHHH
Q 010961 393 FRTMPN--K-SLISWNSMIVGLSQNGS---PIEALDLFCNMNKLD-LRMD------KFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 393 ~~~~~~--~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
|+++.+ | +...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++++|...+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 988775 3 45677778888888888 888999998877642 1233 257788888999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHH
Q 010961 460 ARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
+++.+... -++.....+....
T Consensus 245 ~~al~~~p-~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 245 KNILALDP-TNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHCT-TCHHHHHHHC---
T ss_pred HHHHhcCc-cHHHHHHHhhhhh
Confidence 99988653 2455555544443
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.56 E-value=3.4e-12 Score=112.11 Aligned_cols=218 Identities=12% Similarity=0.028 Sum_probs=133.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCC-CcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTDT-SSVMWNSMISGYIS----NNEDTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
+..+...+...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 333344444444444444444443332 23344455555555 566666666666555543 4444555555555
Q ss_pred c----ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh----cCChhhHHHHHHhccc-CchhhHHHHHHHHHh----
Q 010961 316 S----LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK----RGMPSDACKLFSELKV-YDTILLNTMITVYSS---- 382 (496)
Q Consensus 316 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~---- 382 (496)
. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++... .+...+..+...|..
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCC
Confidence 5 566666666666655543 34455555555655 5666666666665542 234445555555555
Q ss_pred cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchh
Q 010961 383 CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLE 453 (496)
Q Consensus 383 ~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~ 453 (496)
.+++++|...|++..+ .+...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .++++
T Consensus 163 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCST
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 6666666666666544 355677778888888 889999999999888864 25667777788887 88999
Q ss_pred hHHHHHHHHHHcCC
Q 010961 454 LGEQVFARVTIIGL 467 (496)
Q Consensus 454 ~a~~~~~~~~~~~~ 467 (496)
+|...+++..+.|.
T Consensus 240 ~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 240 QAIENFKKGCKLGA 253 (273)
T ss_dssp THHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998888763
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=5e-13 Score=124.82 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCC-CHH
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKF 437 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~ 437 (496)
++..+...+...|++++|...+++..+ ++ ..++..+...|...|++++|...+++..+. +-.+ ...
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 334444444444444444444444331 11 235556666666777777777766665442 1111 134
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCCh
Q 010961 438 SLASVISACANISSLELGEQVFARVTII----GLDS-DQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 487 (496)
++..+...+...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 5666666677777777777777655432 2111 234555666666666654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3.5e-12 Score=112.01 Aligned_cols=216 Identities=10% Similarity=-0.037 Sum_probs=186.8
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----ccchhhHHHHHHHHHHcCCCchHHHHH
Q 010961 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSS----LGFLEHGKQVHGHACKVGVIDDVIVAS 343 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (496)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4567788889999999999999999999883 345677778888888 999999999999999986 667788
Q ss_pred HHHHHHHh----cCChhhHHHHHHhcc-cCchhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh
Q 010961 344 ALLDTYSK----RGMPSDACKLFSELK-VYDTILLNTMITVYSS----CGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ 413 (496)
Q Consensus 344 ~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 413 (496)
.+...|.. .+++++|+..|++.. ..++..+..+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 89999999 999999999999887 4467788889999999 9999999999998775 456778888888888
Q ss_pred ----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh--
Q 010961 414 ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCK-- 483 (496)
Q Consensus 414 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 483 (496)
.+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+. ...+..|..+|.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGE 232 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCC
Confidence 899999999999999875 45778888888888 9999999999999988753 5677889999998
Q ss_pred --cCChHHHHHhhh
Q 010961 484 --CGFIKMDEYYLM 495 (496)
Q Consensus 484 --~g~~~~A~~~~~ 495 (496)
.|++++|.+.++
T Consensus 233 ~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 233 GVTRNEKQAIENFK 246 (273)
T ss_dssp SSSCCSTTHHHHHH
T ss_pred CcccCHHHHHHHHH
Confidence 999999999875
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=3.7e-13 Score=115.95 Aligned_cols=195 Identities=15% Similarity=0.058 Sum_probs=126.3
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455556666666677777777776666542 3345566666666666777777777777666653 3345566666677
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHH
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+...|++++|.+.++++. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776665 34555666677777777777777777776653 356678888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.++++.+.. +.+..++..+..++...|++++|...++.+.+..
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 998887763 4467788888888999999999999999888754
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=2e-12 Score=112.02 Aligned_cols=192 Identities=10% Similarity=-0.022 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3444444444444444444444444331 2233444444444445555555555555544432 2233444445555555
Q ss_pred cCChhhHHHHHHhccc-----CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHH
Q 010961 352 RGMPSDACKLFSELKV-----YDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
.|++++|.+.++++.. .+...+..+...+...|++++|...++++.+ .+...+..+...|...|++++|...
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554432 1223444555555555555555555555442 3456777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
++++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 198 YDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88887753 4566777778888888888888888888887754
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.9e-12 Score=112.17 Aligned_cols=201 Identities=13% Similarity=-0.040 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHH
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDT 286 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (496)
...+..+...+...|++++|...++++.+.+ ..+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~~~~~ 88 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----------------------------PSSADAHAALAVVFQTEMEPK 88 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------------------------CChHHHHHHHHHHHHHcCCHH
Confidence 3445555556666666666666665544200 112334455555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 287 EALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVID-DVIVASALLDTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 287 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 365 (496)
+|.+.++++.+.. +.+...+..+...+...|++++|..+++.+.+.+..| +...+..+..++...|++++|...+++.
T Consensus 89 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 89 LADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555432 2244455555555555666666666665555422222 3445555666666666666666666655
Q ss_pred c---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHH
Q 010961 366 K---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFS 438 (496)
Q Consensus 366 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 438 (496)
. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.+.++++.+. .|+...
T Consensus 168 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 168 LRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence 4 33455566666666677777777776666543 35567778888888899999999999998875 454333
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=4.3e-12 Score=115.96 Aligned_cols=239 Identities=9% Similarity=-0.004 Sum_probs=174.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 238 DFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNE-DTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
...|..+...+...|++++|++.++++.+ .+..+|+.+...+...|+ +++|+..|++..+.. +-+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34566677777777778888887777654 235677778888888886 888888888887753 3456677777778
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh-cCCHHHH
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS-CGRIEDA 389 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~~~a 389 (496)
+...|++++|...++++++.. +.+...|..+..++...|++++|+..|+++. +.+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 888888888888888888765 4466777888888888888888888888877 4456678888888887 5554666
Q ss_pred -----HHHHhhCCC--C-ChhhHHHHHHHHHhCC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--------c
Q 010961 390 -----KHIFRTMPN--K-SLISWNSMIVGLSQNG--SPIEALDLFCNMNKLDLRMDKFSLASVISACANIS--------S 451 (496)
Q Consensus 390 -----~~~~~~~~~--~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--------~ 451 (496)
+..+++..+ | +...|+.+...+...| +.++|++.+.++ +. -+.+...+..+...|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 466666653 3 5668888888888877 688899988887 33 2456778888888888764 2
Q ss_pred -hhhHHHHHHHH-HHcCCCc-hHHHHHHHHHHHH
Q 010961 452 -LELGEQVFARV-TIIGLDS-DQIISTSLVDFYC 482 (496)
Q Consensus 452 -~~~a~~~~~~~-~~~~~~~-~~~~~~~l~~~~~ 482 (496)
.++|..+++++ .+. .| ....|..+...+.
T Consensus 333 ~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 58899999888 553 34 3456666666554
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=2.1e-10 Score=111.92 Aligned_cols=419 Identities=10% Similarity=0.010 Sum_probs=260.7
Q ss_pred cchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCC---HHHHHHH
Q 010961 21 IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--R-NCFSWNAMIEGFMKLGH---KEKSLQL 94 (496)
Q Consensus 21 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~a~~~ 94 (496)
...-...++..++.+ |.....|..++..+.+.+.++.+..+|+++.. | ....|..-+..-.+.|+ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444455566666665 55666999999999999999999999999876 3 45677778888888888 9999999
Q ss_pred HhhCCC-----CChhhHHHHHHHHHhcCCh--------hHHHHHHhhcC------CC-CcccHHHHHHHHH---------
Q 010961 95 FNVMPQ-----KNDFSWNMLISGFAKAGEL--------KTARTLFNDMP------RR-NAIAWNSMIHCYV--------- 145 (496)
Q Consensus 95 ~~~~~~-----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~--------- 145 (496)
|++... |++..|...+....+.++. +.+.++|+... .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999875 6677777777665555543 33446666532 22 2346766665543
Q ss_pred HcCCHHHHHHHHHHHHHchhccCCcCHHHHHH---HHHHH----------HccchHHHHHHHHHHHHHc--CCC------
Q 010961 146 RNGFAREAVRLFKELNSDLVERLQCDAFILAT---VIGAC----------ADLAALEYGKQIHSHILVN--GLD------ 204 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~---ll~~~----------~~~~~~~~a~~~~~~~~~~--~~~------ 204 (496)
..++.+.+..+|++.... +...-..+|.. ..... ....+++.|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 234567788888888762 11111223321 11111 0112334445555443321 111
Q ss_pred ---------c--c------hhHHHHHHHHHHhcC-------ChhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHH
Q 010961 205 ---------F--D------SVLGSSLVNLYGKCG-------DFNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDA 257 (496)
Q Consensus 205 ---------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 257 (496)
| + ...|...+..--..+ ..+.+..+|++... .....|-..+..+...|+.++|
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence 0 0 123333443322222 12234455666553 3456777777777788888888
Q ss_pred H-HHHHhcCC--C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHH
Q 010961 258 R-RVFDRTTD--T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNG---------VLED------------ASTLASVLS 312 (496)
Q Consensus 258 ~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~~~------------~~~~~~l~~ 312 (496)
. .+|+++.. | +...|-..+...-+.|++++|..+|+.+.... -.|+ ...|...+.
T Consensus 363 ~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 363 ITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 6 88887665 3 33446666777777888888888888877531 0131 235666666
Q ss_pred HHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc-CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHH
Q 010961 313 ACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKR-GMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 313 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
...+.|..+.|..+|..+.+.-......+|...+..-.+. ++.+.|.++|+... +.++..+...+......|+.+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 6677788888888888887751112233343333333344 44788888888777 4456666777777777888888
Q ss_pred HHHHHhhCCC--C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010961 389 AKHIFRTMPN--K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISAC 446 (496)
Q Consensus 389 a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 446 (496)
|..+|++... | ....|...+..-.+.|+.+.+.++.+++.+. .|+......++.-|
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8888888765 2 2246777777777888888888888888876 45544555555544
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=1.8e-12 Score=118.55 Aligned_cols=222 Identities=10% Similarity=-0.024 Sum_probs=186.7
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-hhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF-LEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
...|..+...+...|++++|+..+++..+.. +-+...|..+...+...|+ +++|...++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888899999999999999999999853 4457788888889999996 999999999999976 456788999999
Q ss_pred HHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh-CCChhhH
Q 010961 348 TYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ-NGSPIEA 420 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-~g~~~~a 420 (496)
++...|++++|+..|+++. +.+...|..+..++...|++++|+..++++.+ .+...|+.+..++.. .|..++|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999988 55778899999999999999999999999875 366789999999999 6666888
Q ss_pred -----HHHHHHHHhCCCCCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC--------
Q 010961 421 -----LDLFCNMNKLDLRMDKFSLASVISACANIS--SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG-------- 485 (496)
Q Consensus 421 -----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 485 (496)
+..+++..... +-+...|..+...+...| ++++|...++++ +. -+.+...+..|+++|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 58888888752 336778888888898888 689999999887 33 3346788899999999875
Q ss_pred -ChHHHHHhhh
Q 010961 486 -FIKMDEYYLM 495 (496)
Q Consensus 486 -~~~~A~~~~~ 495 (496)
.+++|.++++
T Consensus 332 ~~~~~A~~~~~ 342 (382)
T 2h6f_A 332 DILNKALELCE 342 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 2588888775
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=4.5e-13 Score=125.12 Aligned_cols=232 Identities=14% Similarity=0.020 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--C-C----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--R-N----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAK 115 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 115 (496)
.+......+...|++++|+..|+++.+ | + ..+|..+...+...|++++|...+++... ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~~~ 79 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-----------LART 79 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------HHHh
Confidence 444555566666666666666665542 2 1 13445555555555555555555544321 0000
Q ss_pred cCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhcc-CC-cCHHHHHHHHHHHHccch------
Q 010961 116 AGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVER-LQ-CDAFILATVIGACADLAA------ 187 (496)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-p~~~~~~~ll~~~~~~~~------ 187 (496)
.++.. ....++..+...+...|++++|+..+++........ .. ....++..+...+...|+
T Consensus 80 ~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 80 IGDQL-----------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp TTCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred ccccH-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccc
Confidence 00000 012345555566666666666666666554421000 00 012345555556666666
Q ss_pred --------------HHHHHHHHHHHHHc----CCCc-chhHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC----hH
Q 010961 188 --------------LEYGKQIHSHILVN----GLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD----DF 239 (496)
Q Consensus 188 --------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 239 (496)
++.|...+....+. +..+ ...++..+...+...|++++|...+++..+ ++ ..
T Consensus 149 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 66666666554432 1111 123455566666666666666666655442 11 11
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTD-----TS----SVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
++..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 344444444444444444444443321 00 2234444445555555555555554443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=3.2e-13 Score=116.36 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=87.9
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEG 81 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 81 (496)
+..+..+...+...|+++.|..+++.+++.. |....++..+...+...|++++|+..|+++.+ .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3444455555556666666666666666543 33333555666666666666666666665542 234455555555
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHH
Q 010961 82 FMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVR 155 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 155 (496)
+...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+ .+...+..+...+.+.|++++|.+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566666666665555433 2344444555555555555555555554432 233444445555555555555555
Q ss_pred HHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 156 LFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 156 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
.|++..+. .+.+..++..+..++...|+++.|...++++.+.
T Consensus 181 ~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQ----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55554441 1222334444444444455555555555544443
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=6.9e-12 Score=116.11 Aligned_cols=222 Identities=13% Similarity=0.028 Sum_probs=126.1
Q ss_pred HHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHH--HHccchHHHHH-----------HHHHHHHHcCCCcch-
Q 010961 144 YVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGA--CADLAALEYGK-----------QIHSHILVNGLDFDS- 207 (496)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~- 207 (496)
+.+.+++++|..+++++.+.. ..+..| ...|..++.. ....+..+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~-~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQEL-DQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 356788888888888876642 222223 3333444332 22233444444 555555442211111
Q ss_pred ---hHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC--
Q 010961 208 ---VLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD-----TS-- 268 (496)
Q Consensus 208 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-- 268 (496)
..+......+...|++++|...+++..+ ++ ..++..+...|...|+++.|...+++..+ ++
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 1122255566778888888888877653 22 34566677777777777777777765443 11
Q ss_pred ---cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CC-
Q 010961 269 ---SVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GV- 335 (496)
Q Consensus 269 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~- 335 (496)
..+++.+...|...|++++|+..+++..+. +-.+ ...++..+...+...|++++|...+.+..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 235666667777777777777777666542 1111 1135555666666777777777777666552 22
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
+....++..+..+|...|++++|...+++..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344556666666666677666666666543
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=3.4e-12 Score=108.38 Aligned_cols=195 Identities=9% Similarity=-0.014 Sum_probs=162.7
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
+..|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 5678888899999999999999999988753 4567788888889999999999999999998875 4467788889999
Q ss_pred HHhc-CChhhHHHHHHhccc--Cc---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhh
Q 010961 349 YSKR-GMPSDACKLFSELKV--YD---TILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIE 419 (496)
Q Consensus 349 ~~~~-~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 419 (496)
+... |++++|...++++.. .+ ...+..+...+...|++++|...++++.+ | +...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 999999999998774 22 46778888889999999999999988764 3 46778888899999999999
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 420 ALDLFCNMNKLDLR-MDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 420 a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
|...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+..
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999988763 4 567777777888888899999999988887643
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=3.9e-12 Score=108.04 Aligned_cols=200 Identities=10% Similarity=-0.069 Sum_probs=155.9
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 237 DDFCLSALISGYANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
+...+..+...+...|++++|.+.|+++.+ .+...|..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 355677888888899999999998887654 345678888888889999999999998887753 4467778888888
Q ss_pred Hhcc-cchhhHHHHHHHHHHcCC-CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHH
Q 010961 314 CSSL-GFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 314 ~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
+... |++++|...++.+.+.+. +.+...+..+..++...|++++|...++++. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 999999999988887322 2346677888888888999999999888876 4456778888888889999999
Q ss_pred HHHHHhhCCC----CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 389 AKHIFRTMPN----KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 389 a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
|...++++.+ .+...+..+...+...|+.+.|..+++.+.+. .|+....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 9888887753 35566777777788889999998888888764 4544433
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=2.3e-13 Score=127.44 Aligned_cols=260 Identities=14% Similarity=0.012 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC-h----HHHHHHHHHHHhcCChhHHHHHHHhcCCC---------Ccc
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD-D----FCLSALISGYANCGKMNDARRVFDRTTDT---------SSV 270 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 270 (496)
...+..+...+...|++++|...|+++.+ |+ . ..+..+...+...|++++|...+++..+. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555677788889999999999988764 33 2 46778888888899999998888865531 235
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhcccc-----------------hhhHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRN----G-VLEDASTLASVLSACSSLGF-----------------LEHGKQVHG 328 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 328 (496)
++..+...|...|++++|...+++..+. + .+....++..+...+...|+ +++|...+.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6777888888889999999888887653 1 11224466667777888888 888888877
Q ss_pred HHHHc----CC-CchHHHHHHHHHHHHhcCChhhHHHHHHhccc-----Cc----hhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 329 HACKV----GV-IDDVIVASALLDTYSKRGMPSDACKLFSELKV-----YD----TILLNTMITVYSSCGRIEDAKHIFR 394 (496)
Q Consensus 329 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (496)
+..+. +. .....++..+...|...|++++|...+++... .+ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 21 12234667777778888888888888877651 11 1256666677777777777777776
Q ss_pred hCCC-----C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCchhhHHHHHH
Q 010961 395 TMPN-----K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFA 460 (496)
Q Consensus 395 ~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 460 (496)
+..+ . ...++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6543 1 1345666667777777777777777766542 1011 13356666666777777777777777
Q ss_pred HHHHcC
Q 010961 461 RVTIIG 466 (496)
Q Consensus 461 ~~~~~~ 466 (496)
+..+..
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 776653
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=1.2e-12 Score=122.43 Aligned_cols=59 Identities=14% Similarity=-0.036 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN-----K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
++..+...+...|++++|...+++..+ + ...++..+...|...|++++|.+.+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 334444444445555555444444332 1 1236667778888888888888888887764
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=2e-12 Score=117.12 Aligned_cols=205 Identities=15% Similarity=-0.018 Sum_probs=101.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCC--cCHHHHHHHHHHHHccch--------------------HHHHH
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQ--CDAFILATVIGACADLAA--------------------LEYGK 192 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~--------------------~~~a~ 192 (496)
.++..+...+...|++++|.+.+++..+....... ....++..+...+...|+ ++.|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 34556666666677777777766665542110000 012355556666666666 66666
Q ss_pred HHHHHHHHc----CCC-cchhHHHHHHHHHHhcCChhhHHHHHHhcCC-----CChHHHHHHHHHHHhcCChhHHHHHHH
Q 010961 193 QIHSHILVN----GLD-FDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PDDFCLSALISGYANCGKMNDARRVFD 262 (496)
Q Consensus 193 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (496)
..+++..+. +.. ....++..+...+...|++++|...+++..+ ++...
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------- 221 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA---------------------- 221 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH----------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH----------------------
Confidence 666554432 111 1123455566666666666666666655442 11000
Q ss_pred hcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----
Q 010961 263 RTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV---- 333 (496)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 333 (496)
...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...++...+.
T Consensus 222 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 222 -----ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0123444444555555555555555444321 1000 1234444455555556666665555554432
Q ss_pred CCC-chHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 334 GVI-DDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 334 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
+.. ....++..+...|...|++++|...+++..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 111 113345556666666677776666666554
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=4.6e-12 Score=114.80 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCC-CHHH
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKL----DLRM-DKFS 438 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 438 (496)
+..+...+...|++++|...+++..+ ++ ..++..+...|...|++++|...+++..+. +-++ ...+
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34444444444444444444444331 11 345666777777788888888877776542 1111 1346
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 439 LASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 439 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+..+...+...|++++|...+++..+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777888888888888888877653
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=7.1e-12 Score=116.02 Aligned_cols=221 Identities=9% Similarity=-0.024 Sum_probs=122.6
Q ss_pred HHHccchHHHHHHHHHHHHHc----CCCc-chhHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC-----hHHHHHHH
Q 010961 181 ACADLAALEYGKQIHSHILVN----GLDF-DSVLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD-----DFCLSALI 245 (496)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~ 245 (496)
.+...|+++.|...+++..+. +..+ ...++..+...|...|++++|...+++..+ ++ ..++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344445555555555554432 1111 223445555555555555555555554432 11 23455555
Q ss_pred HHHHhcCChhHHHHHHHhcCC-----CC----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 010961 246 SGYANCGKMNDARRVFDRTTD-----TS----SVMWNSMISGYISNNEDTEALLLFHKMRRN----GV-LEDASTLASVL 311 (496)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l~ 311 (496)
..|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 666666666666666655442 11 236777888888888888888888887662 23 33456677788
Q ss_pred HHHhcccchhhHHHHHHHHHHc----CCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHH
Q 010961 312 SACSSLGFLEHGKQVHGHACKV----GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIE 387 (496)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (496)
..+...|++++|...+++..+. +.+.....+..+...|...|+.+ .++
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~~~ 323 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE----------------------------AIQ 323 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH----------------------------HHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH----------------------------HHH
Confidence 8888889999988888876653 11111222344444555555510 033
Q ss_pred HHHHHHhhCCCC--ChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 388 DAKHIFRTMPNK--SLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 388 ~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+|..++++.... ....+..+...|...|++++|...+++..+
T Consensus 324 ~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 324 GFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444221 123455566666666666666666666544
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=1.1e-09 Score=107.04 Aligned_cols=419 Identities=10% Similarity=0.026 Sum_probs=249.3
Q ss_pred HHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCC---hhHHHHHHhh
Q 010961 58 TDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAGE---LKTARTLFND 128 (496)
Q Consensus 58 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 128 (496)
.+-+..|++... .|..+|..++..+.+.+.++.+..+|+++.. | ....|...+..-.+.|+ ++.+..+|++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 334444444432 4778999999999999999999999999987 4 45567777888888888 9999999999
Q ss_pred cCC-----CCcccHHHHHHHHHHcCCH--------HHHHHHHHHHHHchhccC-CcC-HHHHHHHHHHHH---------c
Q 010961 129 MPR-----RNAIAWNSMIHCYVRNGFA--------REAVRLFKELNSDLVERL-QCD-AFILATVIGACA---------D 184 (496)
Q Consensus 129 ~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~~~~~~~-~p~-~~~~~~ll~~~~---------~ 184 (496)
... |++..|...+....+.++. +...++|+..... -|. .|+ ...|...+.... .
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 874 5666787777766665543 3344777776654 345 554 456666665543 2
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHh-------------cCChhhHHHHHHhcC-------C--CC-----
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGK-------------CGDFNSANQVLNMMK-------E--PD----- 237 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~-------~--~~----- 237 (496)
.++.+.+.++|+.++......-..+|......-.. ..+++.|...+.++. + |.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 45678889999998853222222333322221111 112233334443311 0 00
Q ss_pred ---------------hHHHHHHHHHHHhcCC-------hhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHH-HH
Q 010961 238 ---------------DFCLSALISGYANCGK-------MNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEAL-LL 291 (496)
Q Consensus 238 ---------------~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~-~~ 291 (496)
...|...+.---..+. .+.+..+|++... .....|-..+..+...|+.++|. .+
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1234444433322221 1233455655443 23456666666666777777775 77
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCC---------Cc------------hHHHHHHHHHHHH
Q 010961 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGV---------ID------------DVIVASALLDTYS 350 (496)
Q Consensus 292 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~ 350 (496)
|++.... ++.+...+...+....+.|+++.|..+|+.+.+... .| ...+|...+....
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 7777653 344555555566666677778888888877765310 12 2235666667667
Q ss_pred hcCChhhHHHHHHhcccC----chhhHHHHHHHHHhc-CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHH
Q 010961 351 KRGMPSDACKLFSELKVY----DTILLNTMITVYSSC-GRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+.|+.+.|..+|...... ....|...+..-.+. ++.+.|.++|+...+ | +...|...+......|+.+.|..
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 777777888888776522 222333222222233 347777777777665 3 44555666666667777888888
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 423 LFCNMNKLDLRM--DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 423 ~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
+|++.......+ ....|...+.--...|+.+.+..+.+++.+.- |+......+++-|
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 888777653211 23466667766667788888888877777653 3333333344433
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.2e-10 Score=107.53 Aligned_cols=298 Identities=14% Similarity=0.009 Sum_probs=137.6
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHH--HccchHHHHH---------HHHHHHHHcCC
Q 010961 139 SMIHCY--VRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGAC--ADLAALEYGK---------QIHSHILVNGL 203 (496)
Q Consensus 139 ~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~~~ 203 (496)
.|-..| .+.+++++|.++++++.+.. ..+..| ...|..++..- ...+..+... ..++.+.....
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~-~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDI-QQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHG-GGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 333444 67788888888888876532 122223 33334333321 1112222222 44444432211
Q ss_pred Ccch----hHHHHHHHHHHhcCChhhHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChhHHHHHHHhcCC----
Q 010961 204 DFDS----VLGSSLVNLYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTD---- 266 (496)
Q Consensus 204 ~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 266 (496)
+.+. ..+......+...|++++|...+++..+ ++ ..++..+...|...|+++.|...+++..+
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 1111 1122334445566777777777766543 22 23444555555555555555555544332
Q ss_pred -CC-----cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc--
Q 010961 267 -TS-----SVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV-- 333 (496)
Q Consensus 267 -~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 333 (496)
++ ..+++.+...|...|++++|...+++..+. +.++ ...++..+...+...|++++|...+.+..+.
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 11 224445555555555555555555554331 1111 1123344444445555555555555544431
Q ss_pred --CCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhhHHHHHHH
Q 010961 334 --GVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS-LISWNSMIVG 410 (496)
Q Consensus 334 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~ 410 (496)
+.+....++..+..++...|++++|...+++.. ++......+. ...+..+...
T Consensus 254 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL------------------------DHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCCTTCCSCHHHHHHHHHHH
T ss_pred hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHcCCHHHHHHHHHHHHH
Confidence 112223344444444444555555444444322 1111111111 1234455555
Q ss_pred HHhCCC---hhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 411 LSQNGS---PIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 411 ~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
|...|+ ..+|+..+++ .+..| ....+..+...|...|++++|...+++..+
T Consensus 310 y~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666 5555555554 22222 233555677777777777777777776654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=3.8e-11 Score=98.37 Aligned_cols=163 Identities=7% Similarity=-0.011 Sum_probs=93.5
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
+..|..+...|...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...+..+....
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------------- 69 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------------- 69 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3345555555555555555555555554432 2234444444444555555555555555444432
Q ss_pred HHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 349 YSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
+.+...+..+...+...++++.|...+.+..+ .+...+..+...|.+.|++++|++.++
T Consensus 70 ------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 70 ------------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp ------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 22233334444444444455555444444332 345567777777777888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 426 NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+..+.. +.+...|..+..++.+.|++++|...+++..+.
T Consensus 132 ~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 132 KTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 777653 445667777777888888888888888877663
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.5e-11 Score=116.70 Aligned_cols=201 Identities=12% Similarity=-0.048 Sum_probs=102.1
Q ss_pred hhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHH
Q 010961 254 MNDARRVFDRTTD---TSSVMWNSMISGYISNNED-TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGH 329 (496)
Q Consensus 254 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 329 (496)
++++...+++... .+...+..+...+...|++ ++|+..|++..+.. +.+...+..+...+...|++++|...|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 2334555555566666666 66666666655532 22345555555556666666666666666
Q ss_pred HHHcCCCchHHHHHHHHHHHHhc---------CChhhHHHHHHhcc---cCchhhHHHHHHHHHhc--------CCHHHH
Q 010961 330 ACKVGVIDDVIVASALLDTYSKR---------GMPSDACKLFSELK---VYDTILLNTMITVYSSC--------GRIEDA 389 (496)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~--------~~~~~a 389 (496)
+.+.. |+...+..+..++... |++++|++.|++.. +.+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 55543 3345555555555555 55555655555544 23344455555555544 555555
Q ss_pred HHHHhhCCC--C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 390 KHIFRTMPN--K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 390 ~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
...|++..+ | +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|...
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554432 2 33445555555555555555555555554431 22333444444455555554444443
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=1.6e-10 Score=103.32 Aligned_cols=227 Identities=11% Similarity=-0.067 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHhc----CCh----hHHHHHHHhcCC---CCcchHHHHHHHHH-------hCCCH-------HHHHHHHH
Q 010961 239 FCLSALISGYANC----GKM----NDARRVFDRTTD---TSSVMWNSMISGYI-------SNNED-------TEALLLFH 293 (496)
Q Consensus 239 ~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~ 293 (496)
..|...+....+. ++. ++|...|++... .++..|..++..+. ..|++ ++|..+|+
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~ 88 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 88 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHH
Confidence 4566666665543 233 678888988776 34667888877765 35886 89999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHH-HHHHHHHHHHhcCChhhHHHHHHhccc---Cc
Q 010961 294 KMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVI-VASALLDTYSKRGMPSDACKLFSELKV---YD 369 (496)
Q Consensus 294 ~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 369 (496)
+..+.-.+-+...+..+...+.+.|++++|..+|+++.+... .+.. +|..++..+.+.|++++|..+|++... .+
T Consensus 89 rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 89 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 998741234566788888888999999999999999988532 2233 788899999999999999999998873 23
Q ss_pred hhhHHHHHHHHH-hcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCC--CHHHHHHH
Q 010961 370 TILLNTMITVYS-SCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLD-LRM--DKFSLASV 442 (496)
Q Consensus 370 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~l 442 (496)
...|........ ..|++++|..+|++..+ | +...|..++..+.+.|++++|..+|++..... ++| ....|..+
T Consensus 168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 334433333322 36999999999998865 3 56788889999999999999999999999863 465 35678888
Q ss_pred HHHHhccCchhhHHHHHHHHHHcC
Q 010961 443 ISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 443 ~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+....+.|+.+.|..+++++.+..
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc
Confidence 888888999999999999988754
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=2.6e-11 Score=99.36 Aligned_cols=156 Identities=11% Similarity=0.018 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGL 411 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 411 (496)
+..+|..+...|...|++++|++.|++.. +.++..+..+...|.+.|++++|...++.... .+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 34556666667777777777777776665 34555666677777777777777777766643 4566788888999
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDE 491 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (496)
...++++.|...+.+..... +.+...+..+..++.+.|++++|...+++..+... .++..+..+..+|.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998863 45678899999999999999999999999988753 36788999999999999999999
Q ss_pred Hhhh
Q 010961 492 YYLM 495 (496)
Q Consensus 492 ~~~~ 495 (496)
+.++
T Consensus 162 ~~~~ 165 (184)
T 3vtx_A 162 KYFK 165 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=2.9e-10 Score=101.59 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=174.1
Q ss_pred chhHHHHHHHHHHhc----CCh----hhHHHHHHhcCC---CChHHHHHHHHHHH-------hcCCh-------hHHHHH
Q 010961 206 DSVLGSSLVNLYGKC----GDF----NSANQVLNMMKE---PDDFCLSALISGYA-------NCGKM-------NDARRV 260 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 260 (496)
+...|...+..-.+. ++. ++|..+|++..+ .++..|..++..+. +.|++ ++|..+
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 345666677665443 233 678888888775 45667888777765 45886 899999
Q ss_pred HHhcCC---C-CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcccchhhHHHHHHHHHHcC
Q 010961 261 FDRTTD---T-SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLED-AS-TLASVLSACSSLGFLEHGKQVHGHACKVG 334 (496)
Q Consensus 261 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 334 (496)
|++..+ | +...|..++..+...|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+.+.+.+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 998765 3 3458899999999999999999999999984 454 33 78888888999999999999999999865
Q ss_pred CCchHHHHHHHHHHHH-hcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC----C---Chhh
Q 010961 335 VIDDVIVASALLDTYS-KRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN----K---SLIS 403 (496)
Q Consensus 335 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---~~~~ 403 (496)
+++...|........ ..|++++|..+|++.. +.++..|..++..+.+.|++++|..+|++... + ....
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 334555554443322 3699999999999887 55677889999999999999999999998765 1 3457
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
|..++..+.+.|+.+.|..+++++.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999999999999886
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=4.3e-11 Score=113.61 Aligned_cols=190 Identities=11% Similarity=-0.040 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHHhcCCh-hhHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC--CCcchHHHHHHHH
Q 010961 206 DSVLGSSLVNLYGKCGDF-NSANQVLNMMKE--P-DDFCLSALISGYANCGKMNDARRVFDRTTD--TSSVMWNSMISGY 279 (496)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 279 (496)
+...+..+...+...|++ ++|...|++..+ | +...|..+..+|...|++++|.+.|++..+ |+...+..+...+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 334444444455555555 555555544432 2 233444444444444444444444444332 3333444444455
Q ss_pred HhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------cchhhHHHHHHHHHHcCCC--chHH
Q 010961 280 ISN---------NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL--------GFLEHGKQVHGHACKVGVI--DDVI 340 (496)
Q Consensus 280 ~~~---------~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~ 340 (496)
... |++++|+..|++..+.. +.+...+..+..++... |++++|...|+++.+.... .+..
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 555 55555555555555432 22344455555555554 5555555555555554210 3445
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (496)
.+..+..+|...|++++|.+.|++.. +.+...+..+...+...|++++|.+.+.++
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55555555555555555555555544 223334444555555555555555544443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.1e-11 Score=108.03 Aligned_cols=246 Identities=14% Similarity=0.053 Sum_probs=117.6
Q ss_pred HHHHHHHHHccchHHHHHHHHHHHHHc-------CCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHH
Q 010961 175 LATVIGACADLAALEYGKQIHSHILVN-------GLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISG 247 (496)
Q Consensus 175 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 247 (496)
+..+...+...|+++.|..+++++.+. ..+....++..+...+...|++++|...+++..+
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------ 97 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA------------ 97 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence 333344444444444444444444331 1222344556666666666777766666655431
Q ss_pred HHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhc
Q 010961 248 YANCGKMNDARRVFDRTTD----TSSVMWNSMISGYISNNEDTEALLLFHKMRRN------GVLE-DASTLASVLSACSS 316 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l~~~~~~ 316 (496)
++++... ....++..+...+...|++++|...+++..+. +..| ....+..+...+..
T Consensus 98 ------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 98 ------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN 165 (311)
T ss_dssp ------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 1111000 01334555666666666666666666665542 1112 33455666666777
Q ss_pred ccchhhHHHHHHHHHHc------C-CCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHH
Q 010961 317 LGFLEHGKQVHGHACKV------G-VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDA 389 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 389 (496)
.|++++|..++..+.+. + .+....++..+..+|...|++++|...+++.....+..
T Consensus 166 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------- 228 (311)
T 3nf1_A 166 QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER----------------- 228 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----------------
Confidence 77777777777776653 2 12234456677777777777777777777654210000
Q ss_pred HHHHhhCCCC------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 010961 390 KHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT 463 (496)
Q Consensus 390 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 463 (496)
-+...... ....+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|...+++..
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 229 --EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --HHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00000000 01112222333334455555555555554431 2244556666666777777777777776655
Q ss_pred H
Q 010961 464 I 464 (496)
Q Consensus 464 ~ 464 (496)
+
T Consensus 306 ~ 306 (311)
T 3nf1_A 306 R 306 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=6.9e-11 Score=105.79 Aligned_cols=226 Identities=12% Similarity=0.053 Sum_probs=154.6
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc------CC
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN-------GVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV------GV 335 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 335 (496)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+.++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777778888888888888888887662 22334556777777888888888888888887764 22
Q ss_pred -CchHHHHHHHHHHHHhcCChhhHHHHHHhccc-------C----chhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 010961 336 -IDDVIVASALLDTYSKRGMPSDACKLFSELKV-------Y----DTILLNTMITVYSSCGRIEDAKHIFRTMPN----- 398 (496)
Q Consensus 336 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 398 (496)
+....++..+...|...|++++|...+++... + ....+..+...+...|++++|...++++.+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 33466788889999999999999999987762 1 234677788889999999999988887643
Q ss_pred --C----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHhccCchhhHHHH
Q 010961 399 --K----SLISWNSMIVGLSQNGSPIEALDLFCNMNKL-------DLRMDK-------FSLASVISACANISSLELGEQV 458 (496)
Q Consensus 399 --~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
+ ...++..+...|...|++++|.+.++++.+. ...|.. ..+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1 2346788889999999999999999988753 112211 1222333334455666677777
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 459 FARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
++...... +.+..++..+..+|.+.|++++|.++++
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77665432 3466889999999999999999999886
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.1e-09 Score=100.91 Aligned_cols=167 Identities=13% Similarity=0.002 Sum_probs=86.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcC----HHHHHHHHHHHHccchHHHHHHHHHHHHHcCC-----Cc-chhH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACADLAALEYGKQIHSHILVNGL-----DF-DSVL 209 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~ 209 (496)
....+...|++++|+..|++..+.. ...++ ..++..+..++...|+++.|...+.+..+... .+ ...+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKEL--PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH--hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566677777777777665521 11111 23455555666666666666666666554211 11 2335
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCC--CcchHHHHHHHHHhCCCHHH
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDTE 287 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 287 (496)
++.+...|...|++++|...+++..+ +.+....+ ...++..+...|...|++++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALE------------------------LAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH------------------------HHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 55666666666776666666655432 00000000 02244455555555566666
Q ss_pred HHHHHHHHHHC----CCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 288 ALLLFHKMRRN----GVLEDASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 288 a~~~~~~m~~~----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
|+..+++..+. +.+....++..+...+.+.|++++|...+++..+
T Consensus 241 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66655555441 1122244555555566666666666666666554
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=4.4e-09 Score=96.80 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=75.4
Q ss_pred HHHHHhcccchhhHHHHHHHHHHcCCC----chHHHHHHHHHHHHhcCChhhHHHHHHhcc----cCc-hhhHH-----H
Q 010961 310 VLSACSSLGFLEHGKQVHGHACKVGVI----DDVIVASALLDTYSKRGMPSDACKLFSELK----VYD-TILLN-----T 375 (496)
Q Consensus 310 l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~-----~ 375 (496)
+...+...|++++|...+.+..+.... ....++..+...+...|++++|...+++.. .++ +..+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 333444445555555544444432111 112334444455555555555555555443 111 01111 1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCChhhHHHHHHHHHh----CCCCCCH-HHHHHHH
Q 010961 376 MITVYSSCGRIEDAKHIFRTMPNKS-------LISWNSMIVGLSQNGSPIEALDLFCNMNK----LDLRMDK-FSLASVI 443 (496)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~~~l~ 443 (496)
.+..+...|++++|...+++...+. ...+..+...+...|++++|...+++... .|.+++. ..+..+.
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 2223445566666666666555421 11345566667777777777777766543 2212222 2455556
Q ss_pred HHHhccCchhhHHHHHHHHH
Q 010961 444 SACANISSLELGEQVFARVT 463 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~ 463 (496)
.++...|+.++|...++...
T Consensus 301 ~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 66667777777777776554
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2.9e-10 Score=92.96 Aligned_cols=157 Identities=14% Similarity=0.043 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS 382 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 382 (496)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444555556666666666665554432 2344555555666666666666666666554 2334455555555555
Q ss_pred cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 383 CGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 383 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
.|++++|.+.++++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555432 234445555555555555555555555555442 334455555555555555555555555
Q ss_pred HHHHH
Q 010961 460 ARVTI 464 (496)
Q Consensus 460 ~~~~~ 464 (496)
+.+.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=3.3e-09 Score=97.66 Aligned_cols=196 Identities=14% Similarity=0.078 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhc-cCC--c-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc----chh
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVE-RLQ--C-DAFILATVIGACADLAALEYGKQIHSHILVNGLDF----DSV 208 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 208 (496)
+..+...+...|++++|.+.+++....... +.. | ....+..+...+...|+++.|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344455555556666666555555442100 010 2 12233444455555666666666665555432211 123
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCC----CCh-HHHH-----HHHHHHHhcCChhHHHHHHHhcCCCCc-------ch
Q 010961 209 LGSSLVNLYGKCGDFNSANQVLNMMKE----PDD-FCLS-----ALISGYANCGKMNDARRVFDRTTDTSS-------VM 271 (496)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~ 271 (496)
++..+...+...|++++|...+++..+ ++. ..+. ..+..+...|+.++|...+++...+.. ..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 444555556666666666666655431 111 1111 112224455556666555555544221 13
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRN----GVLEDA-STLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
+..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+.....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445556666777777777776665432 211122 1333444455556666666666655443
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=8.6e-10 Score=97.58 Aligned_cols=196 Identities=11% Similarity=-0.063 Sum_probs=122.6
Q ss_pred chhhhhhHHHHHhccCCCchHHHHHHHHHHHhc--C-ChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 22 HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRC--G-NPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98 (496)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 98 (496)
.+|..++.+..+.-. ++.. .+ .+ + +. + ++++|...|++. ...|...|++++|.+.|++.
T Consensus 2 ~~a~~~~~~a~k~~~-~~~~-~~-~~---~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 2 SDPVELLKRAEKKGV-PSSG-FM-KL---F-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CCHHHHHHHHHHHSS-CCCT-HH-HH---H-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC-cCCC-cc-hh---c-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 356666666666542 2121 22 22 2 32 2 477777776553 55677778888888777766
Q ss_pred CC-----CC----hhhHHHHHHHHHhcCChhHHHHHHhhcCC-----CC----cccHHHHHHHHHHc-CCHHHHHHHHHH
Q 010961 99 PQ-----KN----DFSWNMLISGFAKAGELKTARTLFNDMPR-----RN----AIAWNSMIHCYVRN-GFAREAVRLFKE 159 (496)
Q Consensus 99 ~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~ 159 (496)
.+ .+ ..+|+.+..+|.+.|++++|+..+++..+ .+ ..+++.+..+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 43 11 34667777777777787777777776653 11 34677777888885 888888888887
Q ss_pred HHHchhccCCc-C-HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchh------HHHHHHHHHHhcCChhhHHHHHH
Q 010961 160 LNSDLVERLQC-D-AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSV------LGSSLVNLYGKCGDFNSANQVLN 231 (496)
Q Consensus 160 ~~~~~~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~ 231 (496)
..+.......+ . ..++..+...+...|++++|...+++..+........ .+..+..++...|++++|...|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76621000000 0 3456667777778888888888888777755432221 45566667777777888877777
Q ss_pred hcCC
Q 010961 232 MMKE 235 (496)
Q Consensus 232 ~~~~ 235 (496)
+..+
T Consensus 224 ~al~ 227 (292)
T 1qqe_A 224 EGQS 227 (292)
T ss_dssp GGGC
T ss_pred HHHh
Confidence 7664
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=8.8e-10 Score=90.08 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ---KNDFSWNMLISGFAKA 116 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 116 (496)
.+..+...+...|++++|+..|+++.+ .+...+..+...+...|++++|.+.++++.+ .+...+..+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555443 1334444444455555555555555544432 2233334444444444
Q ss_pred CChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 117 GELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 117 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
|++++|.+.++++.+ .+...+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 444444444443321 1233333344444444444444444444433
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=3.6e-10 Score=111.72 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHH
Q 010961 303 DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV 379 (496)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 379 (496)
+...++.+...+.+.|++++|...|++.++.. +.+...+..+..+|.+.|++++|++.|++.. +.+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888888888899999999998888864 4456778888888888899999988888876 4456678888888
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHH
Q 010961 380 YSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGE 456 (496)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 456 (496)
+...|++++|++.|++..+ | +...|+.+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 8888888888888887764 3 45678888888888888888888888888752 335677888888888888888888
Q ss_pred HHHHHHHH
Q 010961 457 QVFARVTI 464 (496)
Q Consensus 457 ~~~~~~~~ 464 (496)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=2.7e-09 Score=90.68 Aligned_cols=201 Identities=10% Similarity=0.017 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 268 SSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLD 347 (496)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (496)
++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+....+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3456666777777788888888888877776433666666667777778888888888888877754 335667777778
Q ss_pred HHHhcCChhhHHHHHHhcc---cCch-------hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---hhhHHHHHHHHH
Q 010961 348 TYSKRGMPSDACKLFSELK---VYDT-------ILLNTMITVYSSCGRIEDAKHIFRTMPN--KS---LISWNSMIVGLS 412 (496)
Q Consensus 348 ~~~~~~~~~~a~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~ 412 (496)
+|...|++++|...+++.. +.++ ..|..+...+...|++++|+..|++..+ |+ ...|..+...|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 8888888888888887776 2333 3466677777888888888888888775 33 345666666665
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.. +...++++...+ +.+...|.... ....+.+++|...+++..+.... +..+...+.
T Consensus 165 ~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~ 221 (228)
T 4i17_A 165 NN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD 221 (228)
T ss_dssp HH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 44 334455555543 33444444433 33456789999999988876432 334444433
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=1.9e-09 Score=91.64 Aligned_cols=184 Identities=12% Similarity=-0.051 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHH
Q 010961 302 EDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMIT 378 (496)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~ 378 (496)
.|+..+......+...|++++|...|....+...+++...+..+..++...|++++|+..|++.. +.+...+..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45677778888899999999999999999998754677777779999999999999999999887 445667888999
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-Ch-------hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 010961 379 VYSSCGRIEDAKHIFRTMPN--K-SL-------ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD---KFSLASVISA 445 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~--~-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~ 445 (496)
.+...|++++|...+++..+ | +. ..|..+...+...|++++|++.+++..+. .|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 99999999999999998764 3 33 45778888899999999999999999886 554 4677777777
Q ss_pred HhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 446 CANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
+...|+ ..++.+...+. .+...+..+. ....|.+++|.+.++
T Consensus 163 ~~~~~~-----~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLG 204 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 765544 33444444332 1233333222 233455677766654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=3.6e-09 Score=93.53 Aligned_cols=151 Identities=7% Similarity=-0.050 Sum_probs=72.4
Q ss_pred HHHhcCChhhHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChhHHHHHHHhcCCC-----C----cchHHHHHH
Q 010961 216 LYGKCGDFNSANQVLNMMKE-----PD----DFCLSALISGYANCGKMNDARRVFDRTTDT-----S----SVMWNSMIS 277 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~ 277 (496)
.|...|++++|...|++..+ .+ ..+|+.+..+|.+.|++++|+..|++..+. + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666655432 01 234555555555555555555555543320 0 224555555
Q ss_pred HHHhC-CCHHHHHHHHHHHHHCCC----CCC-HHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH------HHHHHH
Q 010961 278 GYISN-NEDTEALLLFHKMRRNGV----LED-ASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV------IVASAL 345 (496)
Q Consensus 278 ~~~~~-~~~~~a~~~~~~m~~~g~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 345 (496)
.|... |++++|+..|++..+... .+. ..++..+...+...|++++|...++.+.+....... ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55554 666666665555543210 000 223444455555555555555555555543322111 133444
Q ss_pred HHHHHhcCChhhHHHHHHhcc
Q 010961 346 LDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 346 ~~~~~~~~~~~~a~~~~~~~~ 366 (496)
..++...|++++|...|++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555544
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=7.4e-10 Score=97.43 Aligned_cols=193 Identities=13% Similarity=0.028 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHhcccchhhHHHHHHHHHHc------CC-CchHHHHHHHHHHHHhcCChhhHHHHHHhccc-------C
Q 010961 303 DASTLASVLSACSSLGFLEHGKQVHGHACKV------GV-IDDVIVASALLDTYSKRGMPSDACKLFSELKV-------Y 368 (496)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~ 368 (496)
...++..+...+...|++++|...+..+.+. +. +....++..+..+|...|++++|.+.+.+... +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677777778888888888888877654 22 33456788889999999999999999987761 1
Q ss_pred ----chhhHHHHHHHHHhcCCHHHHHHHHhhCCC-------C-C---hhhHHHHHHHHHhCCChhhHHHHHHHHHhC---
Q 010961 369 ----DTILLNTMITVYSSCGRIEDAKHIFRTMPN-------K-S---LISWNSMIVGLSQNGSPIEALDLFCNMNKL--- 430 (496)
Q Consensus 369 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--- 430 (496)
...++..+...+...|++++|...+++..+ + + ..++..+...|...|++++|...+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 244677888899999999999998887653 1 2 356788889999999999999999988763
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHH--H-c--CCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 431 ----DLRMD-KFSLASVISACANISSLELGEQVFARVT--I-I--GLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 431 ----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
...|. ...+..+.......+....+..+..... + . ..+....++..+..+|.+.|++++|.++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12332 2334444444444333333333222111 1 1 112245778899999999999999999886
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=1.1e-09 Score=108.30 Aligned_cols=160 Identities=13% Similarity=0.006 Sum_probs=142.0
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+...+.+.|++++|...|+++++.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5689999999999999999999999998853 3457888999999999999999999999999875 4467889999999
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHH
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
|...|++++|++.|++.. +.+...+..+..+|...|++++|++.|++..+ | +...|..+...|...|++++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 999999999999999887 45677899999999999999999999999875 4 56789999999999999999999
Q ss_pred HHHHHHhC
Q 010961 423 LFCNMNKL 430 (496)
Q Consensus 423 ~~~~m~~~ 430 (496)
.+++..+.
T Consensus 167 ~~~kal~l 174 (723)
T 4gyw_A 167 RMKKLVSI 174 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988763
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=3.2e-08 Score=85.77 Aligned_cols=155 Identities=10% Similarity=-0.016 Sum_probs=64.9
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCC-CchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cC-----chhhHHHHHHH
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGV-IDDVIVASALLDTYSKRGMPSDACKLFSELK--VY-----DTILLNTMITV 379 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-----~~~~~~~l~~~ 379 (496)
..+..++...|++++|.+++...+..+. ..+...+..+++.+.+.|+++.|.+.+++|. .| +..+...+..+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 3344444444444544444444433332 1233444444444555555555555554444 12 11222222222
Q ss_pred --HHhcC--CHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhC-----CC----CCCHHHHHHHHH
Q 010961 380 --YSSCG--RIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKL-----DL----RMDKFSLASVIS 444 (496)
Q Consensus 380 --~~~~~--~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~----~p~~~~~~~l~~ 444 (496)
....| ++..|..+|+++.+ |+..+-..+..++.+.|++++|.+.++.+.+. +. +-|+.++..+|.
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 11112 45555555555443 22122223333555555555555555544331 00 223444434444
Q ss_pred HHhccCchhhHHHHHHHHHH
Q 010961 445 ACANISSLELGEQVFARVTI 464 (496)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~ 464 (496)
.....|+ .|.++++++.+
T Consensus 264 l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHH
T ss_pred HHHHhCh--HHHHHHHHHHH
Confidence 4334444 45555555554
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=2.3e-08 Score=86.81 Aligned_cols=206 Identities=9% Similarity=-0.076 Sum_probs=109.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcccchhhHHHHHHHHHHcCC--CchHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED---ASTLASVLSACSSLGFLEHGKQVHGHACKVGV--IDDVIVASAL 345 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 345 (496)
.+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|+.+.+... +.....+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 34444455555555555555555555432 111 33444455555555555555555555555421 1123344445
Q ss_pred HHHHHh--------cCChhhHHHHHHhccc--Cc-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 010961 346 LDTYSK--------RGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414 (496)
Q Consensus 346 ~~~~~~--------~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (496)
..++.. .|++++|...|+++.. |+ ......+.......+. -...+..+...|.+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~--------------~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK--------------LARKQYEAARLYERR 161 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHc
Confidence 555555 5566666666655541 21 1111111110000000 011245667778888
Q ss_pred CChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHhcc----------CchhhHHHHHHHHHHcCCCch--HHHHHHHH
Q 010961 415 GSPIEALDLFCNMNKLDLRMD----KFSLASVISACANI----------SSLELGEQVFARVTIIGLDSD--QIISTSLV 478 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 478 (496)
|++++|+..|+++.+. .|+ ...+..+..+|... |++++|...++.+.+...... ......+.
T Consensus 162 g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp TCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 8888888888888775 232 34666777777755 788889999988877542211 24455566
Q ss_pred HHHHhcCChHHHHHh
Q 010961 479 DFYCKCGFIKMDEYY 493 (496)
Q Consensus 479 ~~~~~~g~~~~A~~~ 493 (496)
..+.+.|+++++..+
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 240 RARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHhhhhhHH
Confidence 666666666655443
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=6.4e-09 Score=91.35 Aligned_cols=201 Identities=12% Similarity=0.065 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHc------CC-CcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHH
Q 010961 172 AFILATVIGACADLAALEYGKQIHSHILVN------GL-DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSAL 244 (496)
Q Consensus 172 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 244 (496)
..++..+...+...|+++.|...+++..+. +. +....++..+...+...|++++|...+++..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 114 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------- 114 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 345555556666666666666666665543 11 223445666777777777777777776654421
Q ss_pred HHHHHhcCChhHHHHHHHhcCCC----CcchHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHH
Q 010961 245 ISGYANCGKMNDARRVFDRTTDT----SSVMWNSMISGYISNNEDTEALLLFHKMRRN------GVLE-DASTLASVLSA 313 (496)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l~~~ 313 (496)
+++...+ ...++..+...+...|++++|...+++..+. +..| ...++..+...
T Consensus 115 ----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 115 ----------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp ----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 0000000 0234444455555555555555555554432 1111 23344455555
Q ss_pred HhcccchhhHHHHHHHHHHc-------CCCc-hHHHHHHHHHHHHhcCC------hhhHHHHHHhcc---cCchhhHHHH
Q 010961 314 CSSLGFLEHGKQVHGHACKV-------GVID-DVIVASALLDTYSKRGM------PSDACKLFSELK---VYDTILLNTM 376 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~---~~~~~~~~~l 376 (496)
+...|++++|...+.++.+. ...+ ....+..+...+...+. +..+...+.... +....++..+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 55566666666666555442 0111 11222222222222222 222223333322 1223456667
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 010961 377 ITVYSSCGRIEDAKHIFRTM 396 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~ 396 (496)
...|...|++++|...+++.
T Consensus 259 a~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=1.7e-07 Score=81.20 Aligned_cols=175 Identities=11% Similarity=0.029 Sum_probs=109.7
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 010961 257 ARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGV-LEDASTLASVLSACSSLGFLEHGKQVHGHACK 332 (496)
Q Consensus 257 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 332 (496)
|+..|++..+ ++..++..+..++...|++++|++++.+....|. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555443 3344445666777777777777777777665543 13455566667777777777777777777766
Q ss_pred cCCCc-----hHHHHHHHHHHH--Hh--cCChhhHHHHHHhccc--CchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 010961 333 VGVID-----DVIVASALLDTY--SK--RGMPSDACKLFSELKV--YDTILLNTMITVYSSCGRIEDAKHIFRTMPN--- 398 (496)
Q Consensus 333 ~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 398 (496)
. .| +..+...+..++ .. .++..+|..+|+++.. |+..+...++.++.+.|++++|++.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5 34 234444444442 22 2377788888887762 3222334444577788888888888765432
Q ss_pred ---------C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH
Q 010961 399 ---------K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF 437 (496)
Q Consensus 399 ---------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 437 (496)
| ++.+...+|......|+ +|.+++.++++. .|+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 2 55666556666666676 889999999986 56543
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=2.2e-08 Score=81.03 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHH-HHhCC
Q 010961 342 ASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVG-LSQNG 415 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~g 415 (496)
+......+...|++++|...|++.. +.++..+..+...+...|++++|...++++.+ |+...+..+... +...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 3445566777788888888887766 45566777777888888888888888888765 433322222211 12223
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 416 SPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 416 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
....|...+++..+.. +-+...+..+..++...|++++|...++++.+....+ +...+..+..++...|+.++|...+
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 3345677888877652 3357778888888888888888888888887755433 3567778888888888888887766
Q ss_pred h
Q 010961 495 M 495 (496)
Q Consensus 495 ~ 495 (496)
+
T Consensus 168 ~ 168 (176)
T 2r5s_A 168 R 168 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=3.8e-07 Score=86.49 Aligned_cols=118 Identities=11% Similarity=0.049 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHHh-CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQ-NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.|...+....+.++.+.|..+|++...|+ ...|......-.. .++.+.|..+|+...+. .+-++..+...++-...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 34445555555566666666666663232 1222221111111 23567777777766654 12234444555555556
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.|+.+.|..+|+.+. .....|...++.=...|+.+.+.++++
T Consensus 367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677777777776651 245566666665566677666666554
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=1.5e-07 Score=89.14 Aligned_cols=345 Identities=13% Similarity=0.063 Sum_probs=175.9
Q ss_pred CChHHHHHHhhhCCC--CChhhHHHHHHHHHhcCC-HHHHHHHHhhCCC------CChhhHHHHHHHHH----hcCChhH
Q 010961 55 GNPTDALLLFDEMPR--RNCFSWNAMIEGFMKLGH-KEKSLQLFNVMPQ------KNDFSWNMLISGFA----KAGELKT 121 (496)
Q Consensus 55 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~ 121 (496)
|+++.+..+|++... |+...|..-+.-..+.++ .+....+|+.... .+...|...+..+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888887765 777777777776666553 3445555555432 24455555555443 2345667
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 122 ARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 122 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
+.++|++...-....+..+- ..|..+... .+..+...++.. ..+.+..|..+++.+...
T Consensus 108 vR~iy~rAL~~P~~~~~~lw-------------~~Y~~fE~~------~~~~~~~~~~~~--~~~~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELW-------------KDFENFELE------LNKITGKKIVGD--TLPIFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHH-------------HHHHHHHHH------HCHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhHHHHH-------------HHHHHHHHH------hccccHHHHHHH--HhHHHHHHHHHHHHHHHH
Confidence 77777766541111112221 112222110 001111111111 112333344444433321
Q ss_pred CCCcchhHHHHHHHHHHhcC--C-----hhhHHHHHHhcCC---CChHHHHHHHHHHHhcCChhHHHHHHHhcCC-CCcc
Q 010961 202 GLDFDSVLGSSLVNLYGKCG--D-----FNSANQVLNMMKE---PDDFCLSALISGYANCGKMNDARRVFDRTTD-TSSV 270 (496)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 270 (496)
-...+...|...+..-...+ - .+.+..+|+++.. .+...|-..+..+.+.|+.+.|..+++++.. |...
T Consensus 167 ~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~ 246 (493)
T 2uy1_A 167 IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGM 246 (493)
T ss_dssp HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS
T ss_pred HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcH
Confidence 00012223444443322111 0 2334556666553 3355677777777777888888888876543 2222
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRN---------GVLE---DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
.... .|....+.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|..+ +.. ..+
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~ 318 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVG 318 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCC
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCC
Confidence 1111 12221111121 2222111 0001 1234555555555677788888888887 321 223
Q ss_pred HHHHHHHHHHHHhc-CChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 010961 339 VIVASALLDTYSKR-GMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQN 414 (496)
Q Consensus 339 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 414 (496)
..+|......-... ++.+.|..+|+... +.++..+...++...+.|+.+.|..+|+++.+ ....|...+..-...
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Confidence 44444333222222 35888888888776 23344555566666778888888888888743 566677777766777
Q ss_pred CChhhHHHHHHHHHh
Q 010961 415 GSPIEALDLFCNMNK 429 (496)
Q Consensus 415 g~~~~a~~~~~~m~~ 429 (496)
|+.+.+.++++++.+
T Consensus 398 G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 398 GSMELFRELVDQKMD 412 (493)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888887777653
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=5.3e-08 Score=85.68 Aligned_cols=159 Identities=9% Similarity=-0.009 Sum_probs=111.6
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHH
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNS-MIV 409 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l~~ 409 (496)
+.+...+..+...+...|++++|...|++.. +.+...+..+...+...|++++|...++++.. |+...... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 4445555666667777777777777777765 44556677777777777788888887777765 44332222 223
Q ss_pred HHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCc-hHHHHHHHHHHHHhcCChH
Q 010961 410 GLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDS-DQIISTSLVDFYCKCGFIK 488 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 488 (496)
.+...++.+.|...+++..+.. +.+...+..+...+...|++++|...++.+.+..... +...+..|+.+|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3556677777888888877763 4467778888888888888888888888887765432 3667888888888888888
Q ss_pred HHHHhhh
Q 010961 489 MDEYYLM 495 (496)
Q Consensus 489 ~A~~~~~ 495 (496)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 8876654
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=2.3e-08 Score=76.56 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 34455566666666777777777776666542 334556666666677777777777777666553
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=1e-08 Score=85.59 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=105.1
Q ss_pred hhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHH----------------HHHHHHhcCChHHHHHHhhhCCC
Q 010961 6 DYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANR----------------LLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
..+......+...|++++|...|+..++.. |+...++.. +...|.+.|++++|+..|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455566777888888888888888876 344435555 77777777777777777777654
Q ss_pred ---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcC--ChhHHHHHHhhcCCCCcc--cHHH
Q 010961 70 ---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-NDFSWNMLISGFAKAG--ELKTARTLFNDMPRRNAI--AWNS 139 (496)
Q Consensus 70 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~--~~~~ 139 (496)
.+...|..+..++...|++++|+..|++..+ | +..++..+...+...| +.+.+...++....++.. .+..
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3556777777777777777777777777654 3 4556666666665443 344556666666655433 3334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILA 176 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 176 (496)
+..++...|++++|+..|++..+ ..|+.....
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~ 194 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVIL-----RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT-----TSCCHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH-----hCCCHHHHH
Confidence 45555666777777777777766 556654333
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=2.9e-08 Score=86.20 Aligned_cols=159 Identities=10% Similarity=-0.020 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCC--C-C---hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHH
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPR--R-N---CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KN----DFSWNMLI 110 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~ 110 (496)
.+-.+...+.+.|++++|+..|+.+.+ | + ..++..+..++.+.|++++|+..|++..+ |+ ...+..+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 445555556666666666666665543 2 2 34455555666666666666666665543 21 22344455
Q ss_pred HHHHh--------cCChhHHHHHHhhcCC--CC-cccH-----------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 111 SGFAK--------AGELKTARTLFNDMPR--RN-AIAW-----------------NSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 111 ~~~~~--------~~~~~~a~~~~~~~~~--~~-~~~~-----------------~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
.++.. .|++++|+..|+++.+ |+ ...+ ..+...|.+.|++++|+..|++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555 6666666666665542 22 2222 4567778888888888888888877
Q ss_pred chhccCCc-CHHHHHHHHHHHHcc----------chHHHHHHHHHHHHHcCC
Q 010961 163 DLVERLQC-DAFILATVIGACADL----------AALEYGKQIHSHILVNGL 203 (496)
Q Consensus 163 ~~~~~~~p-~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~ 203 (496)
. .+..+ ....+..+..++... |++++|...++.+.+..+
T Consensus 177 ~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 177 A--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp H--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred H--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 2 11111 234566666666655 777888888888877543
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=2.4e-08 Score=80.80 Aligned_cols=149 Identities=10% Similarity=0.041 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHH-HHhcC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISG-FAKAG 117 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~~ 117 (496)
+..+...+...|++++|+..|++..+ .+...+..+..++.+.|++++|+..+++... |+...+..+... +...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 44555666666777777776666654 2445566666666666666666666666654 322222111111 11111
Q ss_pred ChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC---HHHHHHHHHHHHccchHHHH
Q 010961 118 ELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD---AFILATVIGACADLAALEYG 191 (496)
Q Consensus 118 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a 191 (496)
+..+|...|++..+ | +...+..+..++...|++++|...|++..+ ..|+ ...+..+..++...|+.+.+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-----VNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----hCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233444444332 2 344455555555555555555555555544 2222 22344444444444444444
Q ss_pred HHHHHH
Q 010961 192 KQIHSH 197 (496)
Q Consensus 192 ~~~~~~ 197 (496)
...|++
T Consensus 164 ~~~y~~ 169 (176)
T 2r5s_A 164 ASKYRR 169 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=1.8e-08 Score=77.14 Aligned_cols=121 Identities=13% Similarity=0.128 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...++++...+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555566666666666666665542 356678888899999999999999999998864 55677888999999999
Q ss_pred CchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
|++++|...++.+.+... .+...+..++.++.+.|++++|.+.++
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 999999999999988653 356788889999999999999998875
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=7.9e-08 Score=80.11 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhcccchhhHHHHHHHHHHcCCCch
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLED-ASTLAS----------------VLSACSSLGFLEHGKQVHGHACKVGVIDD 338 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 338 (496)
...+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...++...+.. +.+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 34455666666666666666553 232 222222 3444444555555555555544443 223
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
...+..+..++...|++++|+..|++..
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555555554443
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=7.1e-09 Score=81.32 Aligned_cols=136 Identities=8% Similarity=-0.055 Sum_probs=91.1
Q ss_pred HHhcCChhhHHHHHHhcccC---chhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHH
Q 010961 349 YSKRGMPSDACKLFSELKVY---DTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+...|++++|+..+....+. ++..+..+...|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 33445555555555555422 233444556666666666666666666543 356788888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHH-HHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 423 LFCNMNKLDLRMDKFSLASVISACANISSLELGEQV-FARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
.|++..+.. +-+...|..+...+.+.|+++++.+. +++..+..+ -++.++......+.+.|+
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 998888752 33577888888888888888776554 577777543 256677777777777664
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=7.5e-08 Score=80.46 Aligned_cols=173 Identities=13% Similarity=0.014 Sum_probs=137.1
Q ss_pred chhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC-CChhhHHHHHHHHHhcC----CHHHHHHHHh
Q 010961 22 HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR-RNCFSWNAMIEGFMKLG----HKEKSLQLFN 96 (496)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 96 (496)
.+|...|+...+.| ++. ++..|...|...+++++|+..|++..+ .++.++..|...|.. + ++++|.+.|+
T Consensus 3 ~eA~~~~~~aa~~g---~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRR-AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHTT---CHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 46777888888765 344 777899999999999999999998765 467788888888887 6 8999999999
Q ss_pred hCCC-CChhhHHHHHHHHHh----cCChhHHHHHHhhcCCCC-----cccHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010961 97 VMPQ-KNDFSWNMLISGFAK----AGELKTARTLFNDMPRRN-----AIAWNSMIHCYVR----NGFAREAVRLFKELNS 162 (496)
Q Consensus 97 ~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~~~~ 162 (496)
+..+ .++..+..|...|.. .+++++|.++|++..+.+ +.++..|...|.. .+++++|+..|++...
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8866 567778888888877 789999999999988743 5788889999988 8899999999999877
Q ss_pred chhccCCcCHHHHHHHHHHHHcc------chHHHHHHHHHHHHHcCCC
Q 010961 163 DLVERLQCDAFILATVIGACADL------AALEYGKQIHSHILVNGLD 204 (496)
Q Consensus 163 ~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~~~ 204 (496)
...+...+..+...+... .++++|...++...+.|.+
T Consensus 158 -----~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 158 -----LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp -----TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred -----cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 223444566666666533 2889999999998888754
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=2e-08 Score=89.46 Aligned_cols=216 Identities=9% Similarity=0.026 Sum_probs=140.6
Q ss_pred cCChhhHHHHHHhcCCCChHHHHHHHHHHHh-cCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010961 220 CGDFNSANQVLNMMKEPDDFCLSALISGYAN-CGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRN 298 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 298 (496)
.|++++|.+++++..+..... +.+ .++++.|...|.+ ....|...|++++|...|.+..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 466777777777655311111 122 4677777666654 356788889999999988877653
Q ss_pred ----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCChhhHHHHHHhcccC
Q 010961 299 ----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GVID-DVIVASALLDTYSKRGMPSDACKLFSELKVY 368 (496)
Q Consensus 299 ----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 368 (496)
|-.+ -..+|..+...|...|++++|...+++..+. |-.. ...++..+..+|.. |++++|+..|++....
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 2111 1346777778888889999999999887653 2111 24567777888877 8899888888876611
Q ss_pred -----c----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 369 -----D----TILLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 369 -----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+ ..++..+...|...|++++|+..|++..+ ++ ...+..++.++...|++++|...|++.. .
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 1 34667777888888888888888877654 11 1245566667777788888888888877 3
Q ss_pred CCCCC------HHHHHHHHHHHhccCchhhHHHH
Q 010961 431 DLRMD------KFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 431 ~~~p~------~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
.|+ ......++.++ ..|+.+.+..+
T Consensus 224 --~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 224 --IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp --STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred --CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 332 12344455544 45666666553
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.8e-08 Score=100.03 Aligned_cols=167 Identities=10% Similarity=-0.018 Sum_probs=108.7
Q ss_pred HhCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 280 ISNNEDTEALLLFHKMR--------RNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 280 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777777777777776 32 13345566666667777777777777777777653 3455666777777777
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFC 425 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 425 (496)
.|++++|++.|++.. +.+...+..+..++.+.|++++ +..|++..+ | +...|..+..++.+.|++++|++.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777766 3455666777777777777777 777776653 2 44567777777777777777777777
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhccCc
Q 010961 426 NMNKLDLRMD-KFSLASVISACANISS 451 (496)
Q Consensus 426 ~m~~~~~~p~-~~~~~~l~~~~~~~g~ 451 (496)
+..+. .|+ ...+..+..++...|+
T Consensus 559 ~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTT--STTHHHHHHHHHHHTC----
T ss_pred hhccc--CcccHHHHHHHHHHHHccCC
Confidence 76654 443 4456666666655444
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=2.9e-07 Score=76.90 Aligned_cols=157 Identities=10% Similarity=-0.012 Sum_probs=93.2
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC----ChhhHHHHHHhcc-cCchhhHHHHHHHHH
Q 010961 307 LASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG----MPSDACKLFSELK-VYDTILLNTMITVYS 381 (496)
Q Consensus 307 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~-~~~~~~~~~l~~~~~ 381 (496)
+..+...+...+++++|...|....+.| ++..+..|...|.. + ++++|.+.|++.. ..++..+..|...|.
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444444444445544444444433 22333334444443 3 4555555555444 223444445555554
Q ss_pred h----cCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHh----CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 382 S----CGRIEDAKHIFRTMPNKS-----LISWNSMIVGLSQ----NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 382 ~----~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
. .+++++|...|++..+.+ +..+..|...|.. .+++++|...|++..+. +++...+..|...|..
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHc
Confidence 4 556666666666666532 5677788888887 77899999999998876 3344566666666654
Q ss_pred c-C-----chhhHHHHHHHHHHcCCCc
Q 010961 449 I-S-----SLELGEQVFARVTIIGLDS 469 (496)
Q Consensus 449 ~-g-----~~~~a~~~~~~~~~~~~~~ 469 (496)
. | ++++|...++...+.|...
T Consensus 175 g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3 2 8899999999888887543
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=6.8e-08 Score=95.95 Aligned_cols=165 Identities=10% Similarity=-0.063 Sum_probs=132.6
Q ss_pred HhcCChhHHHHHHHhcC--------C---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010961 249 ANCGKMNDARRVFDRTT--------D---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSL 317 (496)
Q Consensus 249 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 317 (496)
...|++++|++.+++.. + .+...+..+...+...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 78899999999998876 3 345678888889999999999999999988753 44667788888889999
Q ss_pred cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 010961 318 GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFR 394 (496)
Q Consensus 318 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (496)
|++++|...|+++.+.. +.+...+..+..++...|++++ ++.|++.. +.+...+..+..++.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998875 3456778888999999999999 99998877 4566788889999999999999999999
Q ss_pred hCCC--CC-hhhHHHHHHHHHhCCC
Q 010961 395 TMPN--KS-LISWNSMIVGLSQNGS 416 (496)
Q Consensus 395 ~~~~--~~-~~~~~~l~~~~~~~g~ 416 (496)
+..+ |+ ...+..+..++...|+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 9886 33 4567777777766555
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.6e-07 Score=82.65 Aligned_cols=152 Identities=12% Similarity=-0.006 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHH-H
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVI-G 180 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll-~ 180 (496)
.+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|...+++... ..|+........ .
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-----~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-----QDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-----GGCSHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-----hhcchHHHHHHHHH
Confidence 333444444444444444444444432 2 233444444444444444444444444433 223322221111 1
Q ss_pred HHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC--CC---hHHHHHHHHHHHhcCChh
Q 010961 181 ACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE--PD---DFCLSALISGYANCGKMN 255 (496)
Q Consensus 181 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~ 255 (496)
.+...++.+.+...+++..+..+. +...+..+...+...|++++|...|.++.+ |+ ...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 233334444444444444443322 334444444455555555555555544432 22 234444555555555555
Q ss_pred HHHHHHH
Q 010961 256 DARRVFD 262 (496)
Q Consensus 256 ~a~~~~~ 262 (496)
+|...|+
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5544444
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=3.7e-07 Score=78.06 Aligned_cols=186 Identities=9% Similarity=-0.088 Sum_probs=129.1
Q ss_pred hhhhccCccchhhhhhHHHHHhccCCCchHHHHHH-------HHHHHhcCChHHHHHHhhhCCC--C-------C-----
Q 010961 13 QSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRL-------LQMYMRCGNPTDALLLFDEMPR--R-------N----- 71 (496)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~--~-------~----- 71 (496)
.++ ..+++..|.+.|..+.+.. |+..+.|..+ ...+.+.++..+++..+....+ | +
T Consensus 15 ~~~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 15 VSM-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred hcc-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence 344 5788999999999998886 6666688777 5666666666666666665544 1 1
Q ss_pred ----------hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChhHHHHHHhhcCCCC-----c
Q 010961 72 ----------CFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELKTARTLFNDMPRRN-----A 134 (496)
Q Consensus 72 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~ 134 (496)
...+-.....+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 11233456677788888888888888875 443355566667788888888888888665421 2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCC
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHILVNGLD 204 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 204 (496)
..+..+..++.+.|++++|++.|++... ....|. .........++.+.|+.++|..+|+++....+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3677778888888888888888888765 222243 334555566677788888888888888776543
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=2.9e-07 Score=81.92 Aligned_cols=150 Identities=10% Similarity=-0.034 Sum_probs=101.9
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcC----CCc-hH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKVG----VID-DV 339 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 339 (496)
.+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|...+++..+.. ..+ ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 35666777777778888777777765432 2111 13456677777777 99999999888876531 111 24
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhccc-----Cc----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------h
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELKV-----YD----TILLNTMITVYSSCGRIEDAKHIFRTMPNKSL--------I 402 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~ 402 (496)
.++..+..+|...|++++|+..|++... ++ ...+..+..++...|++++|...|++.. -++ .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 5788889999999999999999998772 11 1256666777888899999999999876 222 1
Q ss_pred hHHHHHHHHHhCCChhhHHH
Q 010961 403 SWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~ 422 (496)
....++..+ ..|+.+.+.+
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 234445544 5667665555
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=1.5e-07 Score=79.46 Aligned_cols=182 Identities=12% Similarity=0.023 Sum_probs=101.9
Q ss_pred chhhHHHHHhhhhccCccchhhhhhHHHHHhccCCC-chHHHHHHHHHHHhcCChHHHHHHhhhCCC--CCh----hhHH
Q 010961 4 RIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNS-TLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNC----FSWN 76 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~ 76 (496)
++..+..+...+...|++++|...|+.+++..+..+ ...++..+..+|.+.|++++|+..|+++.+ |+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 455666677778888888888888888888754322 223677788888888888888888888764 322 1344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC--CCc-ccH----------------
Q 010961 77 AMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR--RNA-IAW---------------- 137 (496)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~---------------- 137 (496)
.+..++...|.. .+ ..|..+...+...|++++|...|+++.+ |+. .++
T Consensus 83 ~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 444444432110 00 0011111222233445555555544443 211 111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC----HHHHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 010961 138 -NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACADLAALEYGKQIHSHILVNGL 203 (496)
Q Consensus 138 -~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 203 (496)
..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|+++.|.+.++.+...++
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 23455666777777777777776662 222 13455566666666777777776666665543
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.78 E-value=5.4e-08 Score=76.25 Aligned_cols=132 Identities=6% Similarity=-0.069 Sum_probs=68.1
Q ss_pred hcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHH
Q 010961 250 NCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQV 326 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 326 (496)
..|++++|+..+++....+ ...+-.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 3344455555554444422 2344455566666666666666666665542 33455555566666666666666666
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHH-HHhcc---cCchhhHHHHHHHHHhc
Q 010961 327 HGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL-FSELK---VYDTILLNTMITVYSSC 383 (496)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~---~~~~~~~~~l~~~~~~~ 383 (496)
|+...+.. +.+...+..+..+|.+.|+.++|.+. +++.. +.++.+|......+...
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 66666543 23445555666666666665554443 34333 33334444444433333
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=3.9e-07 Score=76.13 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=60.9
Q ss_pred HHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEAL 421 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 421 (496)
+...+...|++++|...|++...+++..+..+...+...|++++|...|++..+ .+...|..+...|...|++++|.
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHH
Confidence 334444455555555555555444444555555555555555555555554432 23344555555555555555555
Q ss_pred HHHHHHHhCCCCCC----------------HHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 422 DLFCNMNKLDLRMD----------------KFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 422 ~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
+.+++..+.. +.+ ...+..+..++...|++++|...++...+.
T Consensus 92 ~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 92 KDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555431 111 144555555555555555555555555543
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=4.2e-07 Score=75.95 Aligned_cols=125 Identities=10% Similarity=-0.034 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHH
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAV 154 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 154 (496)
+...+...|++++|++.|++...++...+..+...+...|++++|.+.|++..+ .+..+|..+..++...|++++|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHH
Confidence 344444455555555555555444444555555555555555555555544432 23345555555555555555555
Q ss_pred HHHHHHHHchhcc-----------CCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 155 RLFKELNSDLVER-----------LQC-DAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 155 ~~~~~~~~~~~~~-----------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
+.|++..+..... ..| ....+..+..++...|+++.|...++...+..
T Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 92 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 5555555420000 111 11344555555555666666666666555543
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.73 E-value=4.2e-07 Score=76.77 Aligned_cols=181 Identities=10% Similarity=-0.041 Sum_probs=102.9
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH--HHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVL-E-DASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV--IVASAL 345 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 345 (496)
..+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+.+.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555667788888999999999888874211 1 1345666777888888888888888888876432211 233334
Q ss_pred HHHHHh------------------cCChhhHHHHHHhccc--Cc-hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhH
Q 010961 346 LDTYSK------------------RGMPSDACKLFSELKV--YD-TILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISW 404 (496)
Q Consensus 346 ~~~~~~------------------~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 404 (496)
..++.. .|++++|...|+++.. |+ +..+..........+.. ....
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~--------------~~~~ 150 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL--------------AKYE 150 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH--------------HHHH
Confidence 444433 2344455555544441 11 11111110000000000 0011
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 405 NSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-K---FSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 405 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
..+...|.+.|++++|+..|+++.+. .|+ . ..+..+..++.+.|++++|...++.+...+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23455667777777777777777764 332 2 356667777777777777777777766644
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=1.6e-07 Score=91.49 Aligned_cols=150 Identities=10% Similarity=-0.027 Sum_probs=112.8
Q ss_pred ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 317 LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIF 393 (496)
Q Consensus 317 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (496)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 4457788899999999999999999999887 445678888999999999999999999
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CchhhHHHHHHHHHHcCC
Q 010961 394 RTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI---SSLELGEQVFARVTIIGL 467 (496)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~ 467 (496)
++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..++... |++++|...+++..+.+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 98764 356788899999999999999999999998863 44677888999999999 999999999999888664
Q ss_pred C
Q 010961 468 D 468 (496)
Q Consensus 468 ~ 468 (496)
.
T Consensus 160 ~ 160 (568)
T 2vsy_A 160 G 160 (568)
T ss_dssp C
T ss_pred c
Confidence 3
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=2.2e-07 Score=90.65 Aligned_cols=158 Identities=9% Similarity=-0.047 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHH
Q 010961 282 NNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKL 361 (496)
Q Consensus 282 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 361 (496)
.|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988753 4457788889999999999999999999999865 44677889999999999999999999
Q ss_pred HHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC---CChhhHHHHHHHHHhCCC
Q 010961 362 FSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN---GSPIEALDLFCNMNKLDL 432 (496)
Q Consensus 362 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~ 432 (496)
+++.. +.+...+..+..++...|++++|.+.+++..+ .+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~- 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG- 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence 99887 45677899999999999999999999998764 3567888999999999 99999999999998864
Q ss_pred CCCHHHHHHH
Q 010961 433 RMDKFSLASV 442 (496)
Q Consensus 433 ~p~~~~~~~l 442 (496)
+.+...|..+
T Consensus 159 p~~~~~~~~l 168 (568)
T 2vsy_A 159 VGAVEPFAFL 168 (568)
T ss_dssp CCCSCHHHHT
T ss_pred CcccChHHHh
Confidence 3333344433
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=1.6e-06 Score=76.56 Aligned_cols=155 Identities=12% Similarity=-0.096 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhccc--C-ch------hhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hh
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKV--Y-DT------ILLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LI 402 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 402 (496)
.+...+..+...|++++|.+.+.+... + .. ..+..+...+...|++++|...+++..+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777888888888888876551 1 11 1234455667778899999888876542 11 34
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhccCchhhHHHHHHHHHHcC----CC-chH
Q 010961 403 SWNSMIVGLSQNGSPIEALDLFCNMNKL-DLRMD-----KFSLASVISACANISSLELGEQVFARVTIIG----LD-SDQ 471 (496)
Q Consensus 403 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~ 471 (496)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+.. .. .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988731 01222 2588889999999999999999999876532 11 126
Q ss_pred HHHHHHHHHHHhcCChHHH-HHhhh
Q 010961 472 IISTSLVDFYCKCGFIKMD-EYYLM 495 (496)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A-~~~~~ 495 (496)
.++..+..+|.+.|+.++| ...++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 7888999999999999999 66554
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=1.5e-06 Score=76.74 Aligned_cols=195 Identities=12% Similarity=-0.065 Sum_probs=129.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchH---HHHHHHHHHHHhcCChhhHHHHHHhcccC
Q 010961 292 FHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDV---IVASALLDTYSKRGMPSDACKLFSELKVY 368 (496)
Q Consensus 292 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 368 (496)
+..+......|+..+...+...+.-.- +.+.......+. ..+...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 444444345677777666666553221 111111111212 22333466778888999998888876621
Q ss_pred ---ch------hhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHh-
Q 010961 369 ---DT------ILLNTMITVYSSCGRIEDAKHIFRTMPN-----KS----LISWNSMIVGLSQNGSPIEALDLFCNMNK- 429 (496)
Q Consensus 369 ---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~- 429 (496)
++ ..+..+...+...|++++|...+++..+ ++ ..+++.+...|...|++++|+..++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 1233466667777889999888887642 22 23688999999999999999999999874
Q ss_pred ---C-CCCCC-HHHHHHHHHHHhccCchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCC-hHHHHHhhh
Q 010961 430 ---L-DLRMD-KFSLASVISACANISSLELGEQVFARVTII----GLDS-DQIISTSLVDFYCKCGF-IKMDEYYLM 495 (496)
Q Consensus 430 ---~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-~~~A~~~~~ 495 (496)
. +..|. ..++..+...|.+.|++++|...+++..+. +..+ -..++..+..+|.+.|+ +++|.+.++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 1 22222 347888999999999999999999977642 2222 26788999999999995 599988775
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=4.8e-06 Score=72.93 Aligned_cols=214 Identities=7% Similarity=-0.032 Sum_probs=146.2
Q ss_pred HhcC-ChhHHHHHHHhcCCCC---cchHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc-
Q 010961 249 ANCG-KMNDARRVFDRTTDTS---SVMWNSMISGYISNN--EDTEALLLFHKMRRNGVLEDASTLASVLSAC----SSL- 317 (496)
Q Consensus 249 ~~~~-~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~- 317 (496)
.+.| ..++|+++++.+...+ ..+|+.--..+...| +++++++.++.+.... +-+...++.--..+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3444 4468888888776532 346777777777777 8888888888888753 23334444433333 333
Q ss_pred --cchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh--hHHHHHHhcc---cCchhhHHHHHHHHHhcCC-----
Q 010961 318 --GFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS--DACKLFSELK---VYDTILLNTMITVYSSCGR----- 385 (496)
Q Consensus 318 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~----- 385 (496)
++++++..+++.+.+.. +-+..+++.-.-++...|.++ ++++.++++. +.|...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhh
Confidence 67888888888888765 456667777777777778777 8888888877 4455566666666666665
Q ss_pred -HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhh-HHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCchhhHHHH
Q 010961 386 -IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIE-ALDLFCNMNKLD--LRMDKFSLASVISACANISSLELGEQV 458 (496)
Q Consensus 386 -~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~ 458 (496)
++++++.++++.. .|...|+-+...+.+.|+... +..+..++.+.+ -+.+...+..+..++.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7777777776653 366778777777777777444 445666555432 134667788888888888888888888
Q ss_pred HHHHHH
Q 010961 459 FARVTI 464 (496)
Q Consensus 459 ~~~~~~ 464 (496)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888765
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=5.9e-06 Score=72.85 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=62.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcccchhhHHHHHHHHHHc-----CCCc-hHHHHH
Q 010961 275 MISGYISNNEDTEALLLFHKMRRNGVL-ED----ASTLASVLSACSSLGFLEHGKQVHGHACKV-----GVID-DVIVAS 343 (496)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~ 343 (496)
+...+...|++++|+..+++....... ++ ..+++.+...|...|++++|...++++.+. +..+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 344444455555565555555542111 11 123444555555555555555555554421 1111 112344
Q ss_pred HHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC-C-ChhhHHHHHHHHHhCCC-hhhH
Q 010961 344 ALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-K-SLISWNSMIVGLSQNGS-PIEA 420 (496)
Q Consensus 344 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~g~-~~~a 420 (496)
.+..+|...|++++|...+++.. ++...... + -..+|..+..+|.+.|+ .++|
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A 256 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAI------------------------EISCRINSMALIGQLYYQRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH------------------------HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 44445555555555554444322 11111111 1 13466777777777774 4777
Q ss_pred HHHHHHHHh
Q 010961 421 LDLFCNMNK 429 (496)
Q Consensus 421 ~~~~~~m~~ 429 (496)
.+.+++...
T Consensus 257 ~~~~~~Al~ 265 (293)
T 3u3w_A 257 EDAYKKASF 265 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=4.3e-06 Score=71.51 Aligned_cols=136 Identities=10% Similarity=-0.009 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C----hhhHHHHHHHHHh
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK-S----LISWNSMIVGLSQ 413 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~l~~~~~~ 413 (496)
....+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+..... + ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 44556777888999999999999887 343335556666888999999999999877652 2 2367788899999
Q ss_pred CCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 414 NGSPIEALDLFCNMNKLDLRMD--KFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++..... +......|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--EPKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHHh
Confidence 9999999999999885433254 33566677788899999999999999988654 455555443
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=2.2e-07 Score=81.45 Aligned_cols=94 Identities=5% Similarity=-0.060 Sum_probs=54.2
Q ss_pred hhhHHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHH
Q 010961 5 IDYLARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEG 81 (496)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 81 (496)
+..+..+...+...|++++|...|+..++.. |....++..+...|.+.|++++|+..+++..+ .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555555666666666666666666654 33333555666666666666666666665554 234455556666
Q ss_pred HHhcCCHHHHHHHHhhCCC
Q 010961 82 FMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~ 100 (496)
+...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655543
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=2.8e-07 Score=80.73 Aligned_cols=94 Identities=9% Similarity=-0.118 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+..+.+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554431 2244445555555555555555555555555432 233444555555555
Q ss_pred hcCChhhHHHHHHhcc
Q 010961 351 KRGMPSDACKLFSELK 366 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~ 366 (496)
..|++++|...|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5556655555555544
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=5.2e-07 Score=70.29 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=70.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...+..+...+.+.|++++|...|++... | +...|..+..+|...|++++|+..|++..+.. +.++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 344555566666677777777777766653 3 56677778888888888888888888887753 3356777888888
Q ss_pred HhccCchhhHHHHHHHHHHcC
Q 010961 446 CANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+...|++++|...|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888887754
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=3e-05 Score=67.87 Aligned_cols=222 Identities=6% Similarity=-0.049 Sum_probs=166.7
Q ss_pred HhcCC-hhhHHHHHHhcCC--CC-hHHHHHHHHHHHhcC--ChhHHHHHHHhcCCC---CcchHHHHHHHH----HhC--
Q 010961 218 GKCGD-FNSANQVLNMMKE--PD-DFCLSALISGYANCG--KMNDARRVFDRTTDT---SSVMWNSMISGY----ISN-- 282 (496)
Q Consensus 218 ~~~~~-~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l~~~~----~~~-- 282 (496)
.+.|. .++|+..++.+.. |+ ...|+.--..+...+ ++++++++++.+... +..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 34444 4689999998875 43 456777777888888 999999999987763 345666655555 455
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchh--hHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC-----
Q 010961 283 -NEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLE--HGKQVHGHACKVGVIDDVIVASALLDTYSKRGM----- 354 (496)
Q Consensus 283 -~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 354 (496)
+++++++.+++.+.+.. +-+...+..-.-.+.+.|.++ ++.+.++.+.+.. +-|...++.....+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 78999999999999863 557777777777777788888 9999999999876 4566677777777777776
Q ss_pred -hhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHH-HHHHHhhCCC------CChhhHHHHHHHHHhCCChhhHHHH
Q 010961 355 -PSDACKLFSELK---VYDTILLNTMITVYSSCGRIED-AKHIFRTMPN------KSLISWNSMIVGLSQNGSPIEALDL 423 (496)
Q Consensus 355 -~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~ 423 (496)
++++++.+++.. +.|...|+.+...+.+.|+... +..+..++.+ ++...+..+...|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 788888888776 6677889888888888887444 5556666543 3567888999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHH
Q 010961 424 FCNMNKLDLRM-DKFSLASV 442 (496)
Q Consensus 424 ~~~m~~~~~~p-~~~~~~~l 442 (496)
++.+.+. +.| ....|+..
T Consensus 281 ~~~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 281 YDLLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHT-TCGGGHHHHHHH
T ss_pred HHHHHhc-cChHHHHHHHHH
Confidence 9999864 244 44445433
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=8.3e-07 Score=73.43 Aligned_cols=119 Identities=14% Similarity=-0.020 Sum_probs=57.5
Q ss_pred hcCChhHHHH---HHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchh-ccCCc-CHHHHHHHHHHHHccchHH
Q 010961 115 KAGELKTART---LFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV-ERLQC-DAFILATVIGACADLAALE 189 (496)
Q Consensus 115 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~~~~~~ 189 (496)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++...... .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 43332222344555566666666666666666665544110 00111 2234444555555666666
Q ss_pred HHHHHHHHHHHc----CCC--cchhHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 190 YGKQIHSHILVN----GLD--FDSVLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 190 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
.|...+++..+. +.. .....+..+...+...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666655554442 111 12234555566666666666666666554
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=9.9e-07 Score=66.50 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 375 TMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.....|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|+
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 344444455555555555554432 345666677777777777777777777776653 3456677777777777777
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 452 LELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
+++|...|++..+..+. +......|.
T Consensus 97 ~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 97 WSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 77777777777664322 334444443
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=1e-06 Score=68.65 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 479 (496)
+...+..+...+.+.|++++|...|++..... |.+...|..+..++...|++++|...|++..+..+. ++..+..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44578888999999999999999999999873 457889999999999999999999999999987643 6788999999
Q ss_pred HHHhcCChHHHHHhhh
Q 010961 480 FYCKCGFIKMDEYYLM 495 (496)
Q Consensus 480 ~~~~~g~~~~A~~~~~ 495 (496)
+|.+.|++++|.+.++
T Consensus 113 ~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 9999999999999875
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=1.9e-06 Score=64.50 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|++++|.+.++++.+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33344444444444444444444332 345667777888888888888888888887753 44667788888888888
Q ss_pred CchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 450 SSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
|++++|...++.+.+... .+...+..+..++.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcc
Confidence 888888888888877543 24455666666655443
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=1.3e-05 Score=70.68 Aligned_cols=169 Identities=8% Similarity=-0.014 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhcccchhhHHHHHHHHHHcCCC---c--hHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLED-A----STLASVLSACSSLGFLEHGKQVHGHACKVGVI---D--DVI 340 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~ 340 (496)
.+...+..+...|++++|++.+.+..+...... . ..+..+...+...|++++|...+....+.... + ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677778888888888877766432111 1 11223334455666777777777766543111 1 133
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCCh
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK---SLISWNSMIVGLSQNGSP 417 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 417 (496)
+++.+...|...|++++|...|++.. ++++..... ...++..+...|...|++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal------------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQIL------------------------KQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 56666667777777777776666432 222222221 124677788888888888
Q ss_pred hhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCchhhH-HHHHHHHH
Q 010961 418 IEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELG-EQVFARVT 463 (496)
Q Consensus 418 ~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 463 (496)
++|+..+++..+. +..+ -..+|..+..++.+.|++++| ...+++..
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8888888876542 1111 156778888888888998888 77677554
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=1.9e-06 Score=65.49 Aligned_cols=113 Identities=8% Similarity=-0.078 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.+..+...+...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 344444555555555555555555433 355677788888888899999999988888753 4467788888888889
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
.|++++|...+++..+... .+...+..+..++.+.|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcC
Confidence 9999999999998877542 245677777777776653
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=1.5e-06 Score=65.75 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN 448 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 448 (496)
.+..+...+...|+++.|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 344444445555555555555554432 345677778888888888888888888887752 4456778888888888
Q ss_pred cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 449 ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
.|++++|...++...+... .+...+..+..++.+.|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 8888888888888877643 2566777788888777765
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=1.9e-06 Score=71.23 Aligned_cols=137 Identities=11% Similarity=-0.016 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc----CCC--c
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRN----GVLE-DASTLASVLSACSSLGFLEHGKQVHGHACKV----GVI--D 337 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 337 (496)
..++..+...+...|++++|...+++.... +..| ....+..+...+...|++++|...+.+..+. +.. .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344555555556666666666665555431 1111 2233444444555555666555555554432 101 1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHHhCC
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKS--LISWNSMIVGLSQNG 415 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~g 415 (496)
....+..+...+...|++++|...+++.. .+......+. ..++..+...+...|
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL------------------------VYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------HHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 12334445555555555555555555322 1111111111 123455666677777
Q ss_pred ChhhHHHHHHHHHh
Q 010961 416 SPIEALDLFCNMNK 429 (496)
Q Consensus 416 ~~~~a~~~~~~m~~ 429 (496)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766554
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=1.9e-06 Score=68.52 Aligned_cols=124 Identities=13% Similarity=-0.025 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLS 412 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 412 (496)
...+..+...+...|++++|...|++.. +.+...+..+...+...|++++|...+++..+ .+...|..+...+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456667777778888888888887765 34555666677777777777777777766553 24456666777777
Q ss_pred hCCChhhHHHHHHHHHhCCCCCCHHHHHHHH--HHHhccCchhhHHHHHHHHH
Q 010961 413 QNGSPIEALDLFCNMNKLDLRMDKFSLASVI--SACANISSLELGEQVFARVT 463 (496)
Q Consensus 413 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~ 463 (496)
..|++++|...+++..+.. +.+...+..+. ..+...|++++|...++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777766642 22334443332 23556677777777666543
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=2.8e-06 Score=67.49 Aligned_cols=120 Identities=11% Similarity=-0.017 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|+++.|...|++..+ .+..++..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 44445555555555555555555432 234445555555555555555555555555432 23444555555555555
Q ss_pred CchhhHHHHHHHHHHcCCCchHHHH--HHHHHHHHhcCChHHHHHhh
Q 010961 450 SSLELGEQVFARVTIIGLDSDQIIS--TSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~ 494 (496)
|++++|...+++..+.... +...+ ..++..+.+.|++++|.+.+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5555555555555543321 22222 22222344555555555543
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.45 E-value=4.3e-06 Score=62.93 Aligned_cols=94 Identities=7% Similarity=-0.023 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+......|.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++..++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45555666666666777766666666542 3345566666666666666666666666666653 334555666666666
Q ss_pred hcCChhhHHHHHHhcc
Q 010961 351 KRGMPSDACKLFSELK 366 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~ 366 (496)
..|++++|++.|++..
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666666555
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=2.5e-06 Score=64.51 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQ 413 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 413 (496)
..+..+...+...|++++|...|++.. +.+...+..+...+...|++++|...+++..+ .+...+..+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 344444555555555555555555544 22344555555555556666666655555442 345677788888888
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCch
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSL 452 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 452 (496)
.|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 899999999998887763 34666777777777776664
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.41 E-value=3e-07 Score=82.80 Aligned_cols=91 Identities=11% Similarity=-0.062 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHH
Q 010961 104 FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVI 179 (496)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll 179 (496)
..|..+..++.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|++..+ +.| +...+..+.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ-----LYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHH
Confidence 4555566666666666666666665542 2455666666667777777777777776666 233 345566666
Q ss_pred HHHHccchHHHH-HHHHHHHH
Q 010961 180 GACADLAALEYG-KQIHSHIL 199 (496)
Q Consensus 180 ~~~~~~~~~~~a-~~~~~~~~ 199 (496)
.++...|+.+++ ...+..|.
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666 33444444
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=1.8e-06 Score=69.70 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=59.7
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHH-HHhcCCH--HHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV-YSSCGRI--EDA 389 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~--~~a 389 (496)
..|++++|...+....+.. +.+...+..+..+|...|++++|...|++.. +.++..+..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4455566666666555543 2344555566666666666666666666554 2233344444444 4444554 555
Q ss_pred HHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 390 KHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 390 ~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
...++++.+ | +...+..+...|...|++++|...++++.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555544432 2 3445556666666666666666666666654
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=1e-05 Score=60.37 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 345555555666666666666666655532 2344555555555666666666666666655543 23444555556666
Q ss_pred HhcCChhhHHHHHHhcc
Q 010961 350 SKRGMPSDACKLFSELK 366 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~ 366 (496)
...|++++|...++++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 66666666666665544
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=1.5e-06 Score=70.15 Aligned_cols=116 Identities=8% Similarity=0.039 Sum_probs=95.2
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHH-HHhCCCh--hhH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVG-LSQNGSP--IEA 420 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~-~~~~g~~--~~a 420 (496)
...|++++|...+++.. +.+...+..+...|...|++++|...|++..+ .+...+..+... +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 35678888988888776 55678899999999999999999999998875 366778888888 7789998 999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 421 LDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
...++++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999998863 4467788899999999999999999999998854
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.38 E-value=1e-05 Score=61.28 Aligned_cols=112 Identities=5% Similarity=-0.039 Sum_probs=69.8
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDT 348 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (496)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3456666667777777777777777766542 3355666666666777777777777777776653 3345566666677
Q ss_pred HHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHh
Q 010961 349 YSKRGMPSDACKLFSELK---VYDTILLNTMITVYSS 382 (496)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 382 (496)
+...|++++|.+.|++.. +.+...+..+...+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 777777777777776655 2233344444444443
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=5.6e-07 Score=81.05 Aligned_cols=146 Identities=10% Similarity=-0.015 Sum_probs=97.4
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc--cC-c---------------hhhHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK--VY-D---------------TILLNTMI 377 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~---------------~~~~~~l~ 377 (496)
..+++++|...+....+.. +.+...+..+...+...|++++|+..|++.. .| + ...|..+.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4566677776666544321 2245667778888888888888888888776 22 2 35667777
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 378 TVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
.+|.+.|++++|+..+++..+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776653 345667777777777777777777777776652 3355666677777777777776
Q ss_pred H-HHHHHHHH
Q 010961 455 G-EQVFARVT 463 (496)
Q Consensus 455 a-~~~~~~~~ 463 (496)
+ ...++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 44555554
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=1.2e-06 Score=68.19 Aligned_cols=99 Identities=11% Similarity=-0.049 Sum_probs=84.8
Q ss_pred cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 367 VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
+.+...+..+...+...|++++|...|++... .+...|..+..+|...|++++|+..+++..... +.+...+..+.
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 33555677788899999999999999998764 367788899999999999999999999998863 44678889999
Q ss_pred HHHhccCchhhHHHHHHHHHHcC
Q 010961 444 SACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.++...|++++|...++...+..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999887753
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=6.3e-07 Score=73.95 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch---------------
Q 010961 45 NRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--K-ND--------------- 103 (496)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~--------------- 103 (496)
+..+......|+++++.+.++...+ .....+..+...+...|++++|+..|++..+ | +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 3445555566777777776664433 1334566666777777777777777776653 1 11
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 104 -FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 104 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
..+..+..++...|++++|+..++...+ .+..++..+..++...|++++|++.|++..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555432 2344555555555555666666665555554
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.34 E-value=1.8e-06 Score=67.17 Aligned_cols=104 Identities=17% Similarity=0.045 Sum_probs=85.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-
Q 010961 326 VHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K- 399 (496)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~- 399 (496)
.++.+.+.. +.+...+..+...+...|++++|...|+... +.++..|..+..++...|++++|...|++... |
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 344444432 3355667778889999999999999999887 55777888999999999999999999998864 3
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhC
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+...+..+..+|...|++++|...|++..+.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678888999999999999999999998875
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1e-05 Score=60.93 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 44445555555555555555555442 345677778888888888888888888877753 34566777888888888
Q ss_pred CchhhHHHHHHHHHHcC
Q 010961 450 SSLELGEQVFARVTIIG 466 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~ 466 (496)
|++++|...+++..+..
T Consensus 86 ~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 86 KEYASALETLDAARTKD 102 (126)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC
Confidence 88888888888776643
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=1.9e-06 Score=71.03 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...++...+... -+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 456666677777777777777777766652 33556666777777777777777777777666432 2445666666666
Q ss_pred HhcCChHHHH
Q 010961 482 CKCGFIKMDE 491 (496)
Q Consensus 482 ~~~g~~~~A~ 491 (496)
.+.|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6655555444
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=0.00017 Score=67.36 Aligned_cols=158 Identities=8% Similarity=-0.050 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHH----HHHHHHHHHHccchHHHHHHHHHHHHHc----CCCc-ch
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAF----ILATVIGACADLAALEYGKQIHSHILVN----GLDF-DS 207 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 207 (496)
+..+...|...|++++|.+.+...... .+..++.. +.+.+-..+...|+.+.+..++...... +..+ -.
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEY--MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHH--HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 566777778888888888877776552 11112221 1222223334556777777777665442 2221 23
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhcCC--------C-ChHHHHHHHHHHHhcCChhHHHHHHHhcCC-----CC-----
Q 010961 208 VLGSSLVNLYGKCGDFNSANQVLNMMKE--------P-DDFCLSALISGYANCGKMNDARRVFDRTTD-----TS----- 268 (496)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----- 268 (496)
.++..+...+...|++++|..+++.+.. + ....+..++..|...|++++|...+++... ++
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 4666777778888888888777766541 1 123556666666666666666666654432 11
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 269 SVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
...+..+...+...|++++|...|.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1234455555666677777766665553
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.25 E-value=8.6e-05 Score=65.79 Aligned_cols=165 Identities=12% Similarity=-0.018 Sum_probs=80.0
Q ss_pred hcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-c-chhhH
Q 010961 250 NCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNN-EDTEALLLFHKMRRNGVLEDASTLASVLSACSSL-G-FLEHG 323 (496)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~-~-~~~~a 323 (496)
..+..++|+++++++...+ ..+|+.--..+...| .+++++..++.+.... +-+...++.-...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3344456666666655422 234555545555555 3666666666666542 33444444444444433 4 55566
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh--------hHHHHHHhcc---cCchhhHHHHHHHHHhcCC-------
Q 010961 324 KQVHGHACKVGVIDDVIVASALLDTYSKRGMPS--------DACKLFSELK---VYDTILLNTMITVYSSCGR------- 385 (496)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~------- 385 (496)
..+++.+.+.. +-+...++.-.-++...|.++ ++++.++++. +.|...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 66666665543 234444444433333333333 5555555554 3344445555555544443
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 010961 386 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGS 416 (496)
Q Consensus 386 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 416 (496)
++++++.+++... .|...|+-+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3455555544432 234445444444444443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=1e-05 Score=62.43 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=82.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...+..+...+...|++++|...|++... | +...|..+..+|...|++++|+..+++..... +.++..+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 445666778889999999999999998764 3 66788889999999999999999999998863 4467788889999
Q ss_pred HhccCchhhHHHHHHHHHHcC
Q 010961 446 CANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+...|++++|...++...+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999887643
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=7.6e-06 Score=59.81 Aligned_cols=96 Identities=15% Similarity=0.004 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM--DKFSLASVIS 444 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~ 444 (496)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34445555555556666666665555442 345566667777777777777777777777652 33 4666777777
Q ss_pred HHhcc-CchhhHHHHHHHHHHcC
Q 010961 445 ACANI-SSLELGEQVFARVTIIG 466 (496)
Q Consensus 445 ~~~~~-g~~~~a~~~~~~~~~~~ 466 (496)
++... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777776544
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1e-05 Score=60.88 Aligned_cols=92 Identities=9% Similarity=-0.181 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFY 481 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (496)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 467778889999999999999999998863 557889999999999999999999999999887533 577889999999
Q ss_pred HhcCChHHHHHhhh
Q 010961 482 CKCGFIKMDEYYLM 495 (496)
Q Consensus 482 ~~~g~~~~A~~~~~ 495 (496)
...|++++|.+.++
T Consensus 83 ~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 83 IAVKEYASALETLD 96 (126)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCHHHHHHHHH
Confidence 99999999998875
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=9.7e-06 Score=61.11 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCC----HHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLD--LRMD----KFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..|..+..+|...|++++|++.+++..+.. ..++ ..+|..+..++...|++++|.+.+++..+
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444555555555444443321 0111 12344444555555555555555555444
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00068 Score=60.09 Aligned_cols=83 Identities=5% Similarity=-0.099 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC-ChhhHHHHHHhcCC---CChHHHHHHHHHHHhc-C-ChhHHH
Q 010961 185 LAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG-DFNSANQVLNMMKE---PDDFCLSALISGYANC-G-KMNDAR 258 (496)
Q Consensus 185 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a~ 258 (496)
.+..++|.++.+.++...+. +..+++.--..+...| .+++++.+++.+.. .+..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33445666666666665544 4445555555555555 36666666666553 2333444444444333 4 555566
Q ss_pred HHHHhcCCCC
Q 010961 259 RVFDRTTDTS 268 (496)
Q Consensus 259 ~~~~~~~~~~ 268 (496)
++++++.+.+
T Consensus 146 ~~~~k~L~~d 155 (349)
T 3q7a_A 146 EYIHGSLLPD 155 (349)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHHHHhC
Confidence 6666555533
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=9.7e-06 Score=75.97 Aligned_cols=98 Identities=9% Similarity=-0.089 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchh-ccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcC---CCc-c--h
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLV-ERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNG---LDF-D--S 207 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~--~ 207 (496)
++..+...+...|++++|..++++...... .+.+| ...++..+++.|...|++++|..+++...... ..| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 444555555555555555555555433110 01111 23445555555556666666665555544321 111 1 2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHhc
Q 010961 208 VLGSSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
..+..+...+...|++++|...|.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23444555555566666665555444
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=1.9e-05 Score=58.22 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33344444444555555544444432 245566666777777777777777777776652 33566677777777777
Q ss_pred CchhhHHHHHHHHHHcC
Q 010961 450 SSLELGEQVFARVTIIG 466 (496)
Q Consensus 450 g~~~~a~~~~~~~~~~~ 466 (496)
|++++|...++...+.+
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 77777777777776543
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=8.9e-06 Score=62.19 Aligned_cols=112 Identities=12% Similarity=-0.024 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010961 371 ILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACA 447 (496)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 447 (496)
..+..+...+...|++++|...|++..+ .+...|..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 3444444455555555555555554432 345667777777888888888888888877753 345667777888888
Q ss_pred ccCchhhHHHHHHHHHHcC----CCchHHHHHHHHHHHHh
Q 010961 448 NISSLELGEQVFARVTIIG----LDSDQIISTSLVDFYCK 483 (496)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 483 (496)
..|++++|...++...+.. ...+..+...+..+..+
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776532 11234444444444433
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=3.5e-05 Score=56.77 Aligned_cols=101 Identities=13% Similarity=-0.021 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhC
Q 010961 341 VASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQN 414 (496)
Q Consensus 341 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 414 (496)
.+..+...+...|++++|...|++.. +.++..+..+...+...|++++|...+++..+ .+...+..+...+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444445555555555555555544 22344455555555555666666555555442 2456777788888888
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010961 415 GSPIEALDLFCNMNKLDLRMDKFSLASV 442 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p~~~~~~~l 442 (496)
|++++|.+.+++..+.. +.+...+..+
T Consensus 86 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 88888888888887753 2334444433
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.18 E-value=7.5e-06 Score=61.74 Aligned_cols=93 Identities=9% Similarity=-0.012 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC--ch----HHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD--SD----QIIST 475 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 475 (496)
..+..++..+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|...+++.++.... ++ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 467788999999999999999999998863 446788999999999999999999999988764311 11 24778
Q ss_pred HHHHHHHhcCChHHHHHhhh
Q 010961 476 SLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+..++...|++++|.+.++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 88999999999999998875
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=2.3e-05 Score=59.83 Aligned_cols=95 Identities=8% Similarity=-0.154 Sum_probs=84.0
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHH
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLV 478 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 478 (496)
.+...|..+...+...|++++|...|++..... +.+...|..+..++...|++++|...++...+.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 466788899999999999999999999998863 456788999999999999999999999999886533 678899999
Q ss_pred HHHHhcCChHHHHHhhh
Q 010961 479 DFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 479 ~~~~~~g~~~~A~~~~~ 495 (496)
.+|...|++++|.+.++
T Consensus 85 ~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQ 101 (137)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 99999999999998875
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=3.8e-05 Score=59.39 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 370 TILLNTMITVYSSCGRIEDAKHIFRTMPN--KS----LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
...+..+...+...|++++|...|++..+ |+ ...|..+...|...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 33455555556666666666666665543 44 4667778888888888888888888887752 33567788888
Q ss_pred HHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 444 SACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
.++...|++++|...+++..+.... +...+..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 8888888999998888888775422 34444444443
No 164
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.15 E-value=5.2e-07 Score=81.04 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChh
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKAGELK 120 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 120 (496)
+|..|.++..+.+...+|+..| ++..|+..|..++.+..+.|.+++-...+...++ .++..=+.|+-+|++.+++.
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHH
Confidence 7888999999999888888766 3446778889999999999999999999888776 55566678899999999877
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchh-----------------ccCCcCHHHHHHHHHHHH
Q 010961 121 TARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLV-----------------ERLQCDAFILATVIGACA 183 (496)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~p~~~~~~~ll~~~~ 183 (496)
+.++++. .||..-...+.+-|...|.++.|.-+|..+..-.. ..-.-+..||..+-.+|.
T Consensus 134 elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 134 ELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp TTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred HHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 6554432 35666666677777777777766666655422100 112345678888889999
Q ss_pred ccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcC---CCChHHHHHHHHHHHhcCChhHHHHH
Q 010961 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMK---EPDDFCLSALISGYANCGKMNDARRV 260 (496)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (496)
..+.+..|...--.++-. ......++..|-..|-+++.+.+++.-. +.....|+-|.-.|++- ++++..+.
T Consensus 211 d~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp HSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred CchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 998888776665544432 2223467778888999999998888755 35667788887777765 55666666
Q ss_pred HHhcCC----C-------CcchHHHHHHHHHhCCCHHHHHH
Q 010961 261 FDRTTD----T-------SSVMWNSMISGYISNNEDTEALL 290 (496)
Q Consensus 261 ~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 290 (496)
++.... | ....|.-++-.|..-.++|.|..
T Consensus 285 lklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 285 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 654332 2 34578888888888888887653
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=5.4e-06 Score=62.64 Aligned_cols=107 Identities=6% Similarity=-0.061 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCC----HHHHHHHHH
Q 010961 374 NTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDL--RMD----KFSLASVIS 444 (496)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~l~~ 444 (496)
..+...+...|+++.|...|++..+ .+...+..+...|...|++++|...+++..+... .++ ..++..+..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 3344444444444444444444332 2445666667777777777777777777665421 112 556777777
Q ss_pred HHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYC 482 (496)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (496)
++...|++++|...++...+.. |+......+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 7777888888888887777654 34555555544443
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.13 E-value=3.8e-05 Score=59.16 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 010961 271 MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYS 350 (496)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (496)
.+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++.+.+.. +.++..+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34445556666677777777777666542 3355556666666666777777777777666654 334455566666677
Q ss_pred hcCChhhHHHHHHhcc
Q 010961 351 KRGMPSDACKLFSELK 366 (496)
Q Consensus 351 ~~~~~~~a~~~~~~~~ 366 (496)
..|++++|...|+...
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 7777777777766654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=1.7e-05 Score=59.87 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=54.1
Q ss_pred HHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC------CC----hhhHHHHHHHH
Q 010961 345 LLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN------KS----LISWNSMIVGL 411 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~~~~l~~~~ 411 (496)
+...+...|++++|...|++.. +.+...+..+...+...|++++|...+++..+ ++ ..++..+...|
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 3333444444444444444333 22233334444444444444444444444332 11 45677788888
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 412 SQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 412 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
...|++++|.+.+++..+. .|+......+...
T Consensus 90 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 8999999999999988875 4566555554443
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=1.9e-05 Score=57.62 Aligned_cols=95 Identities=17% Similarity=0.004 Sum_probs=81.6
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC-chHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD-SDQIISTSLV 478 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 478 (496)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45677788899999999999999999998863 456788999999999999999999999999886422 1478889999
Q ss_pred HHHHhc-CChHHHHHhhh
Q 010961 479 DFYCKC-GFIKMDEYYLM 495 (496)
Q Consensus 479 ~~~~~~-g~~~~A~~~~~ 495 (496)
.++.+. |++++|.+.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 999999 99999999875
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=1.8e-05 Score=62.74 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=91.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...+..+...+...|++++|+..|++..+ | +...|..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455788888999999999999999998874 3 67789999999999999999999999998863 4467889999999
Q ss_pred HhccCchhhHHHHHHHHHHcCC-CchHHHHHHHHHHHHhc
Q 010961 446 CANISSLELGEQVFARVTIIGL-DSDQIISTSLVDFYCKC 484 (496)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 484 (496)
+...|++++|...+++..+... .++......+..+..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 128 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999998877542 22333444444444443
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=1.9e-05 Score=62.64 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=84.2
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIV 409 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 409 (496)
..+...+..+...+...|++++|+..|++.. +.+...|..+..+|...|++++|+..|++..+ .+...|..+..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456778889999999999999999999887 45777899999999999999999999998874 35678999999
Q ss_pred HHHhCCChhhHHHHHHHHHhC
Q 010961 410 GLSQNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 410 ~~~~~g~~~~a~~~~~~m~~~ 430 (496)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=1.7e-05 Score=59.15 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANI 449 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 449 (496)
+..+...+.+.|++++|...|++..+ | +...|..+..++...|++++|+..+++..+.. +-+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44555667777777777777777654 3 45666777777777777777777777777652 33556677777777777
Q ss_pred CchhhHHHHHHHHHH
Q 010961 450 SSLELGEQVFARVTI 464 (496)
Q Consensus 450 g~~~~a~~~~~~~~~ 464 (496)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776654
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=5.3e-06 Score=78.14 Aligned_cols=145 Identities=10% Similarity=0.028 Sum_probs=96.2
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCc---------------hhhHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYD---------------TILLNTMI 377 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~---------------~~~~~~l~ 377 (496)
..+++++|...|....+.. +.....+..+...+.+.|++++|+..|++.. +.+ ...|..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3455666666665443321 1234567777888888888888888888776 223 35677777
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 378 TVYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
.+|.+.|++++|+..++++.+ .+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887777654 355677777778888888888888888877752 2345567777777777777766
Q ss_pred HHH-HHHHH
Q 010961 455 GEQ-VFARV 462 (496)
Q Consensus 455 a~~-~~~~~ 462 (496)
+.+ .++.|
T Consensus 404 a~~~~~~~~ 412 (457)
T 1kt0_A 404 RDRRIYANM 412 (457)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 553 34444
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=7.4e-06 Score=77.12 Aligned_cols=84 Identities=8% Similarity=-0.098 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-HHHHHHHH
Q 010961 104 FSWNMLISGFAKAGELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-AFILATVI 179 (496)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ll 179 (496)
..|..+..++.+.|++++|+..+++..+ .+..+|..+..+|...|++++|+..|++..+ +.|+ ...+..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-----VNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TC----CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Confidence 3444555555555555555555555442 2344555555666666666666666666555 3332 23445555
Q ss_pred HHHHccchHHHHH
Q 010961 180 GACADLAALEYGK 192 (496)
Q Consensus 180 ~~~~~~~~~~~a~ 192 (496)
.++...++.+.+.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=1.6e-05 Score=62.62 Aligned_cols=132 Identities=14% Similarity=-0.003 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCCh
Q 010961 340 IVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNK--SLISWNSMIVGLSQNGSP 417 (496)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 417 (496)
.++..+...+...|++++|...+++.... ......+ -..++..+...+...|++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 65 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLI------------------------AKEFGDKAAERIAYSNLGNAYIFLGEF 65 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------------HHHhCCchHHHHHHHHHHHHHHHcCCH
Confidence 45666667777777777777777654410 0000000 012344455555555555
Q ss_pred hhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHc----CCCc-hHHHHHHHHHHHHhcCCh
Q 010961 418 IEALDLFCNMNKL----DLRM-DKFSLASVISACANISSLELGEQVFARVTII----GLDS-DQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 418 ~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 487 (496)
++|.+.+++..+. +-++ ....+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++
T Consensus 66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH
Confidence 5555555554331 1001 1234445555555566666666655544321 1111 124455556666666666
Q ss_pred HHHHHhhh
Q 010961 488 KMDEYYLM 495 (496)
Q Consensus 488 ~~A~~~~~ 495 (496)
++|.+.++
T Consensus 146 ~~A~~~~~ 153 (164)
T 3ro3_A 146 DQAMHFAE 153 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.99 E-value=5.7e-05 Score=56.23 Aligned_cols=92 Identities=11% Similarity=-0.109 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|+++.|...+++.++..+. +...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 33444455555555555555555544 222 3344444444555555555555555555544332 3334445555
Q ss_pred HHHhcCChhhHHHHHHhcC
Q 010961 216 LYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~ 234 (496)
++...|++++|...+++..
T Consensus 94 ~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555443
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=0.00014 Score=56.11 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC----HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD----AFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGS 211 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 211 (496)
.+..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+.... +...+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 444445555555555555555555544 3333 334444444455555555555555554443222 334444
Q ss_pred HHHHHHHhcCChhhHHHHHHhcC
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
.+..++...|++++|...|++..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555443
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.98 E-value=0.0004 Score=61.22 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhcC--ChhHHHHHHhhcCC---CCcccHHHHHHHHHHcCC-HHHHHHHHHH
Q 010961 89 EKSLQLFNVMPQ---KNDFSWNMLISGFAKAG--ELKTARTLFNDMPR---RNAIAWNSMIHCYVRNGF-AREAVRLFKE 159 (496)
Q Consensus 89 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~ 159 (496)
++++.+++.+.. .+..+|+.-...+.+.| .+++++.+++.+.+ .|..+|+.-.-++...|. ++++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 444444444433 23334444444444444 24455555555443 233344444444444444 3555555555
Q ss_pred HHH
Q 010961 160 LNS 162 (496)
Q Consensus 160 ~~~ 162 (496)
+..
T Consensus 171 ~I~ 173 (331)
T 3dss_A 171 LIT 173 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=4.7e-05 Score=59.81 Aligned_cols=138 Identities=15% Similarity=0.029 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHcCCC----c-chh
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHILVNGLD----F-DSV 208 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~ 208 (496)
++..+...+...|++++|++.+++..........+. ..++..+...+...|+++.|...+++..+.... + ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666667777777777777766655211000010 124555555566666666666666655442111 0 123
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCC--CcchHHHHHHHHHhCCCHH
Q 010961 209 LGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDT--SSVMWNSMISGYISNNEDT 286 (496)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 286 (496)
.+..+...+...|++++|...+++..+ +......+ ....+..+...+...|+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLA------------------------IAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH------------------------HHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 444555555556666666555544331 00000000 0234555666677777777
Q ss_pred HHHHHHHHHHH
Q 010961 287 EALLLFHKMRR 297 (496)
Q Consensus 287 ~a~~~~~~m~~ 297 (496)
+|...+++..+
T Consensus 147 ~A~~~~~~a~~ 157 (164)
T 3ro3_A 147 QAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.93 E-value=1.9e-05 Score=74.71 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=70.6
Q ss_pred HHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhH
Q 010961 379 VYSSCGRIEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
.+.+.|++++|.+.+++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555666555555443 245667777777777777777777777777752 33566777777777777777777
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHH--HHhcCChHHHHHhhh
Q 010961 456 EQVFARVTIIGLDSDQIISTSLVDF--YCKCGFIKMDEYYLM 495 (496)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 495 (496)
...+++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777665322 33344445444 666777777776654
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=2.9e-05 Score=56.67 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch------HHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD------QIIS 474 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 474 (496)
...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|...++...+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4566777788888888888888888887753 446777888888888888888888888888764322 2 5566
Q ss_pred HHHHHHHHhcCChHHHHHhhh
Q 010961 475 TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~ 495 (496)
..+..++...|+.++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 677777777787777766544
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=0.00011 Score=55.23 Aligned_cols=93 Identities=10% Similarity=-0.074 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC---HHHHHHHH
Q 010961 373 LNTMITVYSSCGRIEDAKHIFRTMPN--KSL----ISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD---KFSLASVI 443 (496)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~ 443 (496)
+..+...+...|++++|...|+.+.+ |+. ..+..+..++...|++++|...+++..+.. +.+ ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 44567788899999999999998764 433 477888999999999999999999998863 223 56788888
Q ss_pred HHHhccCchhhHHHHHHHHHHcC
Q 010961 444 SACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
.++...|++++|...++.+.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999998864
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.90 E-value=7.2e-05 Score=68.03 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVD 479 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 479 (496)
+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|...+++..+... .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44678888899999999999999999998863 44677888899999999999999999998887653 25677888888
Q ss_pred HHHhcCChHHHHHh
Q 010961 480 FYCKCGFIKMDEYY 493 (496)
Q Consensus 480 ~~~~~g~~~~A~~~ 493 (496)
++.+.|+.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877653
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=0.00015 Score=68.42 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=54.4
Q ss_pred HHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHH
Q 010961 248 YANCGKMNDARRVFDRTTD---TSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGK 324 (496)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 324 (496)
+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4455556666666655443 224455555555556666666666665555542 233445555555555555555555
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHH--HHhcCChhhHHHHHH
Q 010961 325 QVHGHACKVGVIDDVIVASALLDT--YSKRGMPSDACKLFS 363 (496)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 363 (496)
+.++++.+... .+...+..+..+ +...|++++|++.++
T Consensus 95 ~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555421 122222233222 444455555555554
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.89 E-value=0.0002 Score=53.78 Aligned_cols=90 Identities=13% Similarity=-0.024 Sum_probs=40.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCcCH----HHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc--hhHHHHH
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQCDA----FILATVIGACADLAALEYGKQIHSHILVNGLDFD--SVLGSSL 213 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 213 (496)
+...+...|++++|.+.|++..+. .|+. ..+..+..++...|+++.|...++...+..+... ...+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 344444555555555555554441 1111 2334444444455555555555555544332210 2334444
Q ss_pred HHHHHhcCChhhHHHHHHhcC
Q 010961 214 VNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~ 234 (496)
..++...|++++|...|+.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555554443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=2e-05 Score=58.37 Aligned_cols=99 Identities=12% Similarity=0.010 Sum_probs=73.7
Q ss_pred hcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhH
Q 010961 382 SCGRIEDAKHIFRTMPNK------SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELG 455 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 455 (496)
..|++++|+..|++..+. +...+..+...|...|++++|+..+++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 468889999999987653 23578889999999999999999999998863 44678899999999999999999
Q ss_pred HHHHHHHHHcCC-CchHHHHHHHHHHH
Q 010961 456 EQVFARVTIIGL-DSDQIISTSLVDFY 481 (496)
Q Consensus 456 ~~~~~~~~~~~~-~~~~~~~~~l~~~~ 481 (496)
...+++..+... .|+...+...+..|
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999998877532 33344444444444
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.80 E-value=6.2e-05 Score=59.44 Aligned_cols=117 Identities=10% Similarity=-0.022 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChh
Q 010961 339 VIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPI 418 (496)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 418 (496)
...+......+.+.|++++|+..|.+....- .......+..... +..+...+...|..+..+|.+.|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~~~~~~ 80 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRL--------DTLILREKPGEPE--WVELDRKNIPLYANMSQCYLNIGDLH 80 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHHHTSCTTSHH--HHHHHHTHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------HHhcccCCCCHHH--HHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 4456667777778888888888777543110 0000000000000 00001123356777888888888888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 419 EALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 419 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+|+..+++..+.. +.+...|..+..++...|++++|...++...+..
T Consensus 81 ~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 81 EAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8888888888763 4467788888888888899999998888887754
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.77 E-value=0.0072 Score=53.25 Aligned_cols=227 Identities=9% Similarity=0.011 Sum_probs=141.3
Q ss_pred HHhcCChh-HHHHHHHhcCCCCcc---hHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010961 248 YANCGKMN-DARRVFDRTTDTSSV---MWNSMISGYISNNE----------DTEALLLFHKMRRNGVLEDASTLASVLSA 313 (496)
Q Consensus 248 ~~~~~~~~-~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~l~~~ 313 (496)
..+.|.++ +|+++++.+...++. +|+.--..+...+. +++++.+++.+.... +-+..+++.-...
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34556654 789999888775543 44443333333332 577888888887753 4466667666666
Q ss_pred Hhccc--chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC-hhhHHHHHHhcc---cCchhhHHHHHHHHHhc----
Q 010961 314 CSSLG--FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGM-PSDACKLFSELK---VYDTILLNTMITVYSSC---- 383 (496)
Q Consensus 314 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~---- 383 (496)
+.+.+ .++++..+++.+.+.. +-+...++.-.-++...|. ++++++.++.+. +.|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 66666 4788888888888875 4566677776667777777 478888888777 45666676665555544
Q ss_pred ----------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhC-----------CChhhHHHHHHHHHhCCCCCCH-HH
Q 010961 384 ----------GRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQN-----------GSPIEALDLFCNMNKLDLRMDK-FS 438 (496)
Q Consensus 384 ----------~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~-~~ 438 (496)
+.++++++.+..... | |..+|+-+-..+.+. +..+++++.++++.+. .||. ..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--CcccchH
Confidence 346777777777653 3 556666555555444 3466788888888775 4543 23
Q ss_pred HHHHHH---HHhccCchhhHHHHHHHHHHcCCCch-HHHHHHHHHH
Q 010961 439 LASVIS---ACANISSLELGEQVFARVTIIGLDSD-QIISTSLVDF 480 (496)
Q Consensus 439 ~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 480 (496)
+.+++. +....|..+++...+.++++.. |- ..-|..+...
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D--p~r~~~y~d~~~~ 318 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhC--cchhhHHHHHHHH
Confidence 222221 2224566677777888777643 33 3444444433
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.0003 Score=66.13 Aligned_cols=127 Identities=10% Similarity=-0.132 Sum_probs=71.6
Q ss_pred HHhCCCHHHHHHHHHHHHHC---CC---CC-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc-----C--CCchHHHHHH
Q 010961 279 YISNNEDTEALLLFHKMRRN---GV---LE-DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G--VIDDVIVASA 344 (496)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~---g~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 344 (496)
+...|++++|..++++..+. -+ .| ...+++.+...|...|++++|..++.+.++. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777776665432 01 11 2345566666666666666666666655431 2 1122344556
Q ss_pred HHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChhhH
Q 010961 345 LLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSL----ISWNSMIVGLSQNGSPIEA 420 (496)
Q Consensus 345 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a 420 (496)
|...|...|++++|+.++++ |+++++....|+. .+.+.+..++...|.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~------------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICK------------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665553 3334444443332 2345566667777778888
Q ss_pred HHHHHHHHh
Q 010961 421 LDLFCNMNK 429 (496)
Q Consensus 421 ~~~~~~m~~ 429 (496)
..++.++++
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.75 E-value=6.7e-05 Score=55.44 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=22.7
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHh
Q 010961 308 ASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 308 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..+++
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333444444444444444444332 12233333444444444444444444443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00014 Score=57.30 Aligned_cols=93 Identities=14% Similarity=-0.033 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNKL-------DL----------RMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
..+......+.+.|++++|+..|.+.... +- +.+...|..+..+|.+.|++++|...++..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 35666777788888888888888877653 10 12346788899999999999999999999988
Q ss_pred cCCCchHHHHHHHHHHHHhcCChHHHHHhhh
Q 010961 465 IGLDSDQIISTSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 465 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (496)
... .+...+..+..+|...|++++|.+.++
T Consensus 92 ~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 92 REE-TNEKALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCC-cchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 753 367889999999999999999998875
No 191
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.71 E-value=1.9e-05 Score=71.30 Aligned_cols=408 Identities=11% Similarity=0.055 Sum_probs=213.6
Q ss_pred HHHHHhhhhccCccchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC--CChhhHHHHHHHHHhc
Q 010961 8 LARLLQSCNTHHSIHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR--RNCFSWNAMIEGFMKL 85 (496)
Q Consensus 8 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 85 (496)
...|.++....+...+|..-| ++.+ .|+ .|..++....+.|.+++-+..+...++ +++..=+.|+-+|++.
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsy---IkA~-Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSY---IKAD-DPS---SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSS---CCCS-CCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred HHHHHHHHHccCchHHHHHHH---HhCC-ChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 444556666666666665433 2222 122 345666667777777777776666554 4555556677777777
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCC------------------------CCcccHHHHH
Q 010961 86 GHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPR------------------------RNAIAWNSMI 141 (496)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~li 141 (496)
++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.. .++.+|-.+-
T Consensus 130 ~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 66544322222 25555555666666666666666666655531 3678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcC
Q 010961 142 HCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCG 221 (496)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (496)
.+|+..+.+.-|.-.--.+.- .| .....++..|...|.+++...+++.-... -......++.|.-.|++-
T Consensus 207 ~ACvd~~EfrLAqicGLniIv------ha--deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV------HA--DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC------CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-
T ss_pred HHHhCchHHHHHHHhcchhcc------cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-
Confidence 999999988776554333322 11 12334666777888888888888876632 233566788888888875
Q ss_pred ChhhHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChhHHHHHHHh-------------cC--CCCcchHHHH
Q 010961 222 DFNSANQVLNMMKE-----------PDDFCLSALISGYANCGKMNDARRVFDR-------------TT--DTSSVMWNSM 275 (496)
Q Consensus 222 ~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------~~--~~~~~~~~~l 275 (496)
++++..+.++..-. .....|..++-.|..-..++.|....-. +. -.|...|--.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKA 356 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 356 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHH
Confidence 45666655554432 2345688888888888888876543211 00 0344444444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
|+-|.... +..--.++.-+.. .+.++ .+++.+.+.|++..+..++..... ..+..+-.++-+.|....++
T Consensus 357 i~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IEEEDy 426 (624)
T 3lvg_A 357 IQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDY 426 (624)
T ss_dssp HHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhhhhhH
Confidence 44443321 1111111111111 01111 112222333333333333222221 22344445566667777776
Q ss_pred hhHHHHHHhc------------ccCchhhHHH-HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHH
Q 010961 356 SDACKLFSEL------------KVYDTILLNT-MITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALD 422 (496)
Q Consensus 356 ~~a~~~~~~~------------~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 422 (496)
+.-+.-.+.. .+....-+.. -...|.+.++++++..+.++=. .|.-.|...+..|+.+-|.+
T Consensus 427 ~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaee 501 (624)
T 3lvg_A 427 QALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEE 501 (624)
T ss_dssp HHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHH
Confidence 6544433322 2222222332 2345566777887766544322 12222333445566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCchh
Q 010961 423 LFCNMNKLDLRMDKFSLASVISACANISSLE 453 (496)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 453 (496)
+++-..+.| +...|...+-.|...=+++
T Consensus 502 LL~yFv~~g---~~EcF~a~LytCYdLlrpD 529 (624)
T 3lvg_A 502 LLQWFLQEE---KRECFGACLFTCYDLLRPD 529 (624)
T ss_dssp HHHHHHHHC---STHHHHHHHHHTSSSSSCH
T ss_pred HHHHHHHcC---chHHHHHHHHHHhhccChH
Confidence 666665544 3334444444444443333
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00028 Score=64.12 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=67.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+...|..+..+|.+.|++++|+..+++..+ | +...|..+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445677778888888888888888887765 3 56788889999999999999999999998862 3356677777777
Q ss_pred HhccCchhhHHH
Q 010961 446 CANISSLELGEQ 457 (496)
Q Consensus 446 ~~~~g~~~~a~~ 457 (496)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666543
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00042 Score=65.16 Aligned_cols=127 Identities=8% Similarity=-0.032 Sum_probs=80.5
Q ss_pred HhcccchhhHHHHHHHHHHc-----C--CCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCH
Q 010961 314 CSSLGFLEHGKQVHGHACKV-----G--VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (496)
+...|++++|+.++.+.++. | .+....+++.|..+|...|++++|..++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------------------- 376 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR---------------------- 376 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence 34566666666666655442 1 111234555666666666666666665553
Q ss_pred HHHHHHHhhCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHhccCchhhH
Q 010961 387 EDAKHIFRTMPNKS----LISWNSMIVGLSQNGSPIEALDLFCNMNK-----LDL-RMD-KFSLASVISACANISSLELG 455 (496)
Q Consensus 387 ~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a 455 (496)
|++++++...++ ..+++.|...|...|++++|..++++..+ .|- .|+ ..+...+-.++...|.+++|
T Consensus 377 --aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 377 --MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp --HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333332 24688899999999999999999888754 231 232 33566677778888999999
Q ss_pred HHHHHHHHH
Q 010961 456 EQVFARVTI 464 (496)
Q Consensus 456 ~~~~~~~~~ 464 (496)
+.++..+.+
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.0002 Score=64.29 Aligned_cols=142 Identities=8% Similarity=-0.048 Sum_probs=74.2
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTY 349 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (496)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ...++..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34556667777788888888888876653 343321 22333333333222 113567777888
Q ss_pred HhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH-HHhCCChhhHHH
Q 010961 350 SKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVG-LSQNGSPIEALD 422 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~-~~~~g~~~~a~~ 422 (496)
.+.|++++|+..+++.. +.+...+..+..+|...|++++|...|++..+ | +...+..+... ....+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 44566788888888888888888888888875 3 33445555544 234566777888
Q ss_pred HHHHHHhC
Q 010961 423 LFCNMNKL 430 (496)
Q Consensus 423 ~~~~m~~~ 430 (496)
.|++|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 88888764
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00034 Score=62.78 Aligned_cols=144 Identities=12% Similarity=-0.058 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 010961 306 TLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGR 385 (496)
Q Consensus 306 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (496)
.+..+...+.+.|++++|...|....+.. |+... +...++..++...+. ...|..+..+|.+.|+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHcCC
Confidence 35566677888899999999999887753 33221 222333344433332 2478889999999999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC-CHHHHHHHHHH-HhccCchhhHHHHHH
Q 010961 386 IEDAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRM-DKFSLASVISA-CANISSLELGEQVFA 460 (496)
Q Consensus 386 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~-~~~~g~~~~a~~~~~ 460 (496)
+++|+..+++..+ .+...|..+..+|...|++++|...|++..+. .| +...+..+... ....+..+.+...++
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998864 36678999999999999999999999998875 45 44455555554 334567788888999
Q ss_pred HHHHcC
Q 010961 461 RVTIIG 466 (496)
Q Consensus 461 ~~~~~~ 466 (496)
.|....
T Consensus 324 ~~l~~~ 329 (338)
T 2if4_A 324 GIFKGK 329 (338)
T ss_dssp ------
T ss_pred HhhCCC
Confidence 886643
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.61 E-value=0.00042 Score=53.36 Aligned_cols=90 Identities=13% Similarity=-0.090 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhccCchhhHHHHHHHHHHc-----
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD-------------KFSLASVISACANISSLELGEQVFARVTII----- 465 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 465 (496)
+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555666677777777777776653 232 227777777888888888888888877764
Q ss_pred CCCc-hHHHH----HHHHHHHHhcCChHHHHHhhh
Q 010961 466 GLDS-DQIIS----TSLVDFYCKCGFIKMDEYYLM 495 (496)
Q Consensus 466 ~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~ 495 (496)
.+.| +...| .....++...|++++|.+.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 1133 45666 778888888888888887765
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.57 E-value=0.001 Score=51.18 Aligned_cols=93 Identities=17% Similarity=0.015 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-------------HHHHHHHHHHHHccchHHHHHHHHHHHHHc-
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-------------AFILATVIGACADLAALEYGKQIHSHILVN- 201 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 201 (496)
.+......+.+.|++++|++.|++..+ +.|+ ...|..+..++...|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~-----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME-----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh-----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 345566667778888888888888777 3333 125555666666666666666666666654
Q ss_pred ------CCCcchhHH----HHHHHHHHhcCChhhHHHHHHhcC
Q 010961 202 ------GLDFDSVLG----SSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 202 ------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
.+. +...| .....++...|++++|+..|++..
T Consensus 88 n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 88 NRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 221 33344 555555556666666666555544
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.54 E-value=0.0028 Score=61.08 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010961 372 LLNTMITVYSSCG--RIEDAKHIFRTMPN---KSLISWNSMIVGLSQNG-SPIEALDLFCNMNKLDLRMDKFSLASVISA 445 (496)
Q Consensus 372 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 445 (496)
+|..-...+.+.+ +++++++.++++.+ .|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 3333333444444 33444444444432 23444444444444444 4555555555554432 2234444443333
Q ss_pred Hhc--------------cCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChHH
Q 010961 446 CAN--------------ISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIKM 489 (496)
Q Consensus 446 ~~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (496)
+.+ .+.++++.+.+...+..... +...|..+...+.+.|+.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 332 24567777777777765432 56677777777777666443
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.00079 Score=46.58 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 010961 401 LISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDF 480 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (496)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3567777888888899999999998887753 44667788888888889999999999998877643 245667777777
Q ss_pred HHhcC
Q 010961 481 YCKCG 485 (496)
Q Consensus 481 ~~~~g 485 (496)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 66544
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00019 Score=52.11 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCc-c----hhHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDF-D----SVLG 210 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~ 210 (496)
.|..+...+.+.|++++|++.|++..+. .+.+...+..+..++...|++++|...++..++..... + ...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455555666666666666666666552 22234455555555556666666666666655443221 0 2334
Q ss_pred HHHHHHHHhcCChhhHHHHHHhc
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMM 233 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~ 233 (496)
..+..++...|+.+.|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 44445555555555554444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.00077 Score=49.33 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 388 DAKHIFRTMPN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 388 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
.|...|++..+ .+...+..+...|...|++++|+..+++..+.. +.+...|..+..++...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666543 356788899999999999999999999998863 44677899999999999999999999998876
Q ss_pred cCC-CchHHHHHHHHHHHHhcC
Q 010961 465 IGL-DSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 465 ~~~-~~~~~~~~~l~~~~~~~g 485 (496)
... .++......+...+.+.|
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhc
Confidence 432 123444555555554444
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.40 E-value=0.0015 Score=49.67 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=24.2
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCchhhHHHHHHHHHHcC
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACAN----ISSLELGEQVFARVTIIG 466 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 466 (496)
.+++++|.++|++..+.| ++..+..|...|.. .+++++|..++++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 344555555555554443 23334444444444 455555555555555544
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.40 E-value=0.00034 Score=51.29 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=59.0
Q ss_pred chhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 010961 22 HVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR---RNCFSWNAMIEGFMKLGHKEKSLQLFNVM 98 (496)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 98 (496)
+.|...++..++.. |.....+..+...|...|++++|+..|++..+ .+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777765 44455788888888899999999988887764 34567888888888888888888888876
Q ss_pred CC
Q 010961 99 PQ 100 (496)
Q Consensus 99 ~~ 100 (496)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.39 E-value=0.012 Score=56.70 Aligned_cols=167 Identities=11% Similarity=-0.039 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc----------hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC-
Q 010961 285 DTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF----------LEHGKQVHGHACKVGVIDDVIVASALLDTYSKRG- 353 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 353 (496)
.++|++.++++.... +-+...|+.--..+...|+ ++++...++.+.+.. +-+..+|+.-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 346677777776642 2233344444444444444 777777777777765 345566766666677777
Q ss_pred -ChhhHHHHHHhcc---cCchhhHHHHHHHHHhcC-CHHHHHHHHhhCCCC---ChhhHHHHHHHHHhC-----------
Q 010961 354 -MPSDACKLFSELK---VYDTILLNTMITVYSSCG-RIEDAKHIFRTMPNK---SLISWNSMIVGLSQN----------- 414 (496)
Q Consensus 354 -~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----------- 414 (496)
+++++++.++++. +.|...|+.-...+.+.| .++++++.++++.+. |..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 5588888888777 445566777777777777 788888888888763 556777666665552
Q ss_pred ---CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhh
Q 010961 415 ---GSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLEL 454 (496)
Q Consensus 415 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 454 (496)
+.++++++.+++..... +-|...|..+-..+.+.+..++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688999998888753 4467778877777777666443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.33 E-value=0.0012 Score=50.16 Aligned_cols=109 Identities=14% Similarity=-0.036 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-CChHHHHHHHHHHHh----cCChhHHHHH
Q 010961 186 AALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDFCLSALISGYAN----CGKMNDARRV 260 (496)
Q Consensus 186 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 260 (496)
+++++|.+.|++..+.|.. .. . |...|...+.+++|.++|++..+ .+...+..+...|.. .++.++|.++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3556666666666666522 22 2 55555555556666666655443 333344444444443 3444444444
Q ss_pred HHhcCC-CCcchHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 010961 261 FDRTTD-TSSVMWNSMISGYIS----NNEDTEALLLFHKMRRNG 299 (496)
Q Consensus 261 ~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g 299 (496)
|++..+ .++.++..+...|.. .+++++|..+|++..+.|
T Consensus 84 ~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 444332 223444444444444 455555555555555443
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.29 E-value=0.02 Score=58.22 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=107.3
Q ss_pred HHHHHhcCChHHHHH-HhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 010961 48 LQMYMRCGNPTDALL-LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLF 126 (496)
Q Consensus 48 ~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (496)
.......+++++|.+ ++..+.. ......++..+.+.|.++.|+++.+. + ..-.......|+++.|.++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~---~-----~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD---Q-----DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC---H-----HHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC---c-----chheehhhhcCCHHHHHHHH
Confidence 344456789999988 6654441 22337777888888999999887742 1 11234456779999999998
Q ss_pred hhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcc
Q 010961 127 NDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFD 206 (496)
Q Consensus 127 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 206 (496)
+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++.+.....|.
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 7774 557899999999999999999999998865 44555555557777766666655555442
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhcC
Q 010961 207 SVLGSSLVNLYGKCGDFNSANQVLNMMK 234 (496)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (496)
++....+|.+.|++++|.+++.++.
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2334445556677777766665543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0011 Score=47.18 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC-CCchHHHHHHHH
Q 010961 400 SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIG-LDSDQIISTSLV 478 (496)
Q Consensus 400 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 478 (496)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 44566677777777777777777777777653 3355677777777777777777777777665432 123444445555
Q ss_pred HHHHhcC
Q 010961 479 DFYCKCG 485 (496)
Q Consensus 479 ~~~~~~g 485 (496)
..+.+.+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 5554443
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.18 E-value=0.006 Score=41.93 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 136 AWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 136 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
.+..+...+...|++++|+..|++..+. .+.+...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4455555566666666666666665552 1223445555555556666666666666665554322 3334444444
Q ss_pred HH
Q 010961 216 LY 217 (496)
Q Consensus 216 ~~ 217 (496)
++
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0014 Score=46.48 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 103 DFSWNMLISGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
...+..+...+...|++++|+..|++..+ | +..+|..+..+|...|++++|++.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555556666666666666655542 2 344566666666666666666666666554
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.99 E-value=0.00095 Score=51.29 Aligned_cols=35 Identities=9% Similarity=-0.183 Sum_probs=17.8
Q ss_pred cCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCH
Q 010961 352 RGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRI 386 (496)
Q Consensus 352 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 386 (496)
.+.+++|.+.++... +.+...|..+..++...+++
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhccc
Confidence 344555666665554 33444555555555554443
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.88 E-value=0.053 Score=39.60 Aligned_cols=135 Identities=15% Similarity=0.034 Sum_probs=88.4
Q ss_pred ccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC-CChH---HHHHHHHHHHhcCChhHHHH
Q 010961 184 DLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE-PDDF---CLSALISGYANCGKMNDARR 259 (496)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~a~~ 259 (496)
-.|..++..++..+...+. +..-||-++.-....-+-+-..++++.+-+ -|.. -...++.+|.+.+..
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~----- 90 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL----- 90 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC-----
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcch-----
Confidence 3456666666666665543 344455555554455555555555555543 1111 123344444444433
Q ss_pred HHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCC
Q 010961 260 VFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVI 336 (496)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 336 (496)
....+..+.....+|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 91 ---------se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 ---------NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ---------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 455667778888999999999999886443 4788888889999999999999999999999998864
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.72 E-value=0.0096 Score=54.94 Aligned_cols=90 Identities=3% Similarity=-0.198 Sum_probs=55.7
Q ss_pred cccchhhHHHHHHHHHHc-----C--CCchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHH
Q 010961 316 SLGFLEHGKQVHGHACKV-----G--VIDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIED 388 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (496)
..|++++|..++++.++. | .+....+++.|..+|...|++++|+.++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~------------------------ 365 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK------------------------ 365 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH------------------------
Confidence 346677777777766542 1 112245566777777777777777776663
Q ss_pred HHHHHhhCCCCC---h-hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 389 AKHIFRTMPNKS---L-ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 389 a~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
+++++++...++ + .+++.|...|...|++++|..++++..+
T Consensus 366 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 366 IIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333334433332 2 4677788888888888888888777654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.078 Score=53.84 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=13.1
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHH
Q 010961 270 VMWNSMISGYISNNEDTEALLLFHKM 295 (496)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~m 295 (496)
..|..+...+.+.++++.|.+.|..+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555555555555555444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.69 E-value=0.0072 Score=42.45 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=35.8
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 408 IVGLSQNGSPIEALDLFCNMNKLDLRMDKF-SLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 408 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
...+...|++++|...+++..+.. +.+.. .+..+..++...|++++|...++...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445556666666766666666542 23445 66666666666677777777776666543
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.65 E-value=0.0085 Score=46.01 Aligned_cols=70 Identities=13% Similarity=-0.028 Sum_probs=35.3
Q ss_pred HcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchH----------HHHHHHHHHHHHcCCCcchhHHHHHHH
Q 010961 146 RNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAAL----------EYGKQIHSHILVNGLDFDSVLGSSLVN 215 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 215 (496)
+.+.+++|++.++...+. .+.+...+..+..++...+++ ++|+..|++.++..+. +...|..+..
T Consensus 14 r~~~feeA~~~~~~Ai~l----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 344556666666665552 222444555455555554443 3555555555555433 3445555555
Q ss_pred HHHhc
Q 010961 216 LYGKC 220 (496)
Q Consensus 216 ~~~~~ 220 (496)
+|...
T Consensus 89 ay~~l 93 (158)
T 1zu2_A 89 AYTSF 93 (158)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.41 E-value=0.034 Score=51.35 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=57.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHhcccchhhHHHHHHHHHHc-----C--CCchHHH
Q 010961 276 ISGYISNNEDTEALLLFHKMRRNG---VLE----DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G--VIDDVIV 341 (496)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~m~~~g---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 341 (496)
+..+...|++++|+.++++..+.. +.| ...+++.+...|...|++++|..++.++++. | .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445567788888888888776531 112 2346667777777777777777777766542 2 1223445
Q ss_pred HHHHHHHHHhcCChhhHHHHHHh
Q 010961 342 ASALLDTYSKRGMPSDACKLFSE 364 (496)
Q Consensus 342 ~~~l~~~~~~~~~~~~a~~~~~~ 364 (496)
++.|...|...|++++|+.++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 66777777777777777777664
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.40 E-value=0.033 Score=49.41 Aligned_cols=72 Identities=8% Similarity=-0.031 Sum_probs=48.9
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHH
Q 010961 399 KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 474 (496)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+++....+ |...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 355666666666666677777777777777763 666666666777777777777777777776644 444443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.37 E-value=0.027 Score=51.99 Aligned_cols=28 Identities=7% Similarity=-0.181 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 402 ISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 402 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677788888888888888888877654
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.32 E-value=0.034 Score=51.29 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=63.4
Q ss_pred hCCCHHHHHHHHHHHHHC---CCC---C-CHHHHHHHHHHHhcccchhhHHHHHHHHHHc-----C--CCchHHHHHHHH
Q 010961 281 SNNEDTEALLLFHKMRRN---GVL---E-DASTLASVLSACSSLGFLEHGKQVHGHACKV-----G--VIDDVIVASALL 346 (496)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~---g~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 346 (496)
..|++++|..++++..+. -+. | ...+++.+...|...|++++|..++++.++. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999988887652 122 2 2467888888999999999999999887652 3 223355688889
Q ss_pred HHHHhcCChhhHHHHHHhc
Q 010961 347 DTYSKRGMPSDACKLFSEL 365 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~ 365 (496)
..|...|++++|+.++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999888753
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.19 E-value=0.058 Score=47.85 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHh--c---ccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh---cC-Chh-------hHHHHHH
Q 010961 300 VLEDASTLASVLSACS--S---LGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK---RG-MPS-------DACKLFS 363 (496)
Q Consensus 300 ~~~~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~~-------~a~~~~~ 363 (496)
.+.+...|...+++.. . ..+..+|..+|+++++.. +.....+..+..+|.. .+ ... .+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4667777888877643 2 345688999999999874 2223344433333321 11 111 1111111
Q ss_pred hcc--cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 364 ELK--VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 364 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
.+. +.++.+|..+...+...|+++.|...++++.. |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 111 55677888888778888999999999998874 77777778888899999999999999998885 6777666
Q ss_pred H
Q 010961 440 A 440 (496)
Q Consensus 440 ~ 440 (496)
.
T Consensus 347 ~ 347 (372)
T 3ly7_A 347 Y 347 (372)
T ss_dssp H
T ss_pred H
Confidence 5
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.16 E-value=0.034 Score=38.84 Aligned_cols=59 Identities=10% Similarity=-0.008 Sum_probs=36.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHchhccCCc-CHH-HHHHHHHHHHccchHHHHHHHHHHHHHcCC
Q 010961 140 MIHCYVRNGFAREAVRLFKELNSDLVERLQC-DAF-ILATVIGACADLAALEYGKQIHSHILVNGL 203 (496)
Q Consensus 140 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 203 (496)
....+.+.|++++|++.|++..+ ..| +.. .+..+..++...|+++.|.+.+++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ-----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455666777777777776665 223 334 555566666666677777777666666543
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.19 Score=39.24 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=43.7
Q ss_pred HhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 010961 350 SKRGMPSDACKLFSELKVYDTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNK 429 (496)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 429 (496)
...|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..+ +..+.-.|...|+.+...++-+....
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~ 88 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQT 88 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555555554433 3344555555555555555555555555443 22333334444444444444333333
Q ss_pred CCCCCCHHHHHHHHHHHhccCchhhHHHHH
Q 010961 430 LDLRMDKFSLASVISACANISSLELGEQVF 459 (496)
Q Consensus 430 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 459 (496)
.| -++.....+...|+++++.+++
T Consensus 89 ~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 89 RE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred Cc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 32 1222223333445555555544
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.03 E-value=0.28 Score=35.91 Aligned_cols=139 Identities=9% Similarity=0.006 Sum_probs=83.5
Q ss_pred hcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhccc-CchhhHHHHHHHHHhcCCHHHHHHHH
Q 010961 315 SSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTMITVYSSCGRIEDAKHIF 393 (496)
Q Consensus 315 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (496)
.-.|..++..++..+...+. +..-||.++--....-+-+-..+.++.+-. -|. ...|++......+
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHH
Confidence 34566777777776666542 333445555444444444445555554431 111 1233444444444
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCC
Q 010961 394 RTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLD 468 (496)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 468 (496)
-.+.. +....+..+.....+|+-+.-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 85 ~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33332 3344556667777888888888888875442 4778888888888888888888888888888887764
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.4 Score=37.41 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=50.5
Q ss_pred HhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHH
Q 010961 114 AKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQ 193 (496)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 193 (496)
...|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|...|+.+...+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCCHHHHHH
Confidence 3455555555555544 2344566666666666666666666655543 2333333444455544444
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 194 IHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
+-+.....|- ++.....+...|+++++.++|.+..+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4444333331 23333344445666666665554443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.00 E-value=0.02 Score=39.63 Aligned_cols=64 Identities=9% Similarity=-0.128 Sum_probs=41.5
Q ss_pred chhhHHHHHhhhhccCc---cchhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC
Q 010961 4 RIDYLARLLQSCNTHHS---IHVGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 4 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
|+..+..+..++...++ .++|..+++..++.. |+...+...+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666544333 577777777777765 45554666677777777777777777777654
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.80 E-value=0.3 Score=41.54 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=69.3
Q ss_pred HHHHHHHHhhCCC--CC---hhhHHHHHHHHHhC-----CChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcc-Cch
Q 010961 386 IEDAKHIFRTMPN--KS---LISWNSMIVGLSQN-----GSPIEALDLFCNMNKLDLRM--DKFSLASVISACANI-SSL 452 (496)
Q Consensus 386 ~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~-g~~ 452 (496)
...|...+++..+ |+ -..|..+...|.+. |+.++|.++|++..+. .| +..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 4566777777664 44 35788899999884 9999999999999985 56 367888888888884 999
Q ss_pred hhHHHHHHHHHHcCCC--chHHHHHHH
Q 010961 453 ELGEQVFARVTIIGLD--SDQIISTSL 477 (496)
Q Consensus 453 ~~a~~~~~~~~~~~~~--~~~~~~~~l 477 (496)
+.+.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999887666 555544443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.70 E-value=0.062 Score=40.77 Aligned_cols=83 Identities=6% Similarity=-0.039 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHHHHHhCC---ChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCchhhHHH
Q 010961 386 IEDAKHIFRTMP---NKSLISWNSMIVGLSQNG---SPIEALDLFCNMNKLDLRM--DKFSLASVISACANISSLELGEQ 457 (496)
Q Consensus 386 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 457 (496)
...+.+-|.+.. .++..+...+.+++++.+ +.++++.+++...+.. .| +...+-.+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444432 256677777888888888 5668999999888864 35 35566667778899999999999
Q ss_pred HHHHHHHcCCCchH
Q 010961 458 VFARVTIIGLDSDQ 471 (496)
Q Consensus 458 ~~~~~~~~~~~~~~ 471 (496)
.++.+.+. .|+-
T Consensus 93 y~~~lL~i--eP~n 104 (152)
T 1pc2_A 93 YVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHH--CTTC
T ss_pred HHHHHHhc--CCCC
Confidence 99988874 4543
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.60 E-value=0.16 Score=43.26 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=72.5
Q ss_pred cCChhhHHHHHHhcCCCChH--HHHHHHHH-HHhc--CC------hhHHHHHHHhcCCCC-----cchHHHHHHHHHhC-
Q 010961 220 CGDFNSANQVLNMMKEPDDF--CLSALISG-YANC--GK------MNDARRVFDRTTDTS-----SVMWNSMISGYISN- 282 (496)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~--~~~~l~~~-~~~~--~~------~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~- 282 (496)
.++..+..+.+..+...++. .|..++.+ +... |. ...|...+++..+-| ...|..+...|.+.
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vP 213 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAP 213 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSC
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCC
Confidence 44455555666666544433 34444432 2322 32 345666666665532 34677777777773
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-ccchhhHHHHHHHHHHcCCC--chHHHHH
Q 010961 283 ----NEDTEALLLFHKMRRNGVLEDASTLASVLSACSS-LGFLEHGKQVHGHACKVGVI--DDVIVAS 343 (496)
Q Consensus 283 ----~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 343 (496)
|+.++|.+.|++..+.+..-+..++......++. .|+.+.+.+.+++.+..... |+....+
T Consensus 214 p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 214 ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 7888888888877774321125555566666666 37778888888877776555 5444333
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.40 E-value=0.085 Score=36.45 Aligned_cols=64 Identities=8% Similarity=-0.074 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHhCCC---hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc
Q 010961 401 LISWNSMIVGLSQNGS---PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 401 ~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
...+..+..++...++ .++|..++++..+.. +-+......+...+...|++++|...|+.+.+.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344444444433222 455555555555542 224445555555555566666666666655543
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.23 E-value=0.15 Score=38.24 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=75.4
Q ss_pred cCchhhHHHHHHHHHhcCCH------HHHHHHHhhCCC---CC-h---hhHHHHHHHHH---hCCChhhHHHHHHHHHhC
Q 010961 367 VYDTILLNTMITVYSSCGRI------EDAKHIFRTMPN---KS-L---ISWNSMIVGLS---QNGSPIEALDLFCNMNKL 430 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~---~~-~---~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~ 430 (496)
+.|+.+|-..+...-+.|+. ++..++|++... |+ . ..|--+---|+ ..+++++|.++|+.+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66788888888888888888 777788877653 22 1 22332222222 357899999999998764
Q ss_pred CCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHH
Q 010961 431 DLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIIS 474 (496)
Q Consensus 431 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 474 (496)
+-.- ...|.....--.+.|+..+|.+++...+..+.+|....-
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 3222 667777777778899999999999999988877665333
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.05 E-value=0.17 Score=35.71 Aligned_cols=63 Identities=5% Similarity=-0.198 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcC
Q 010961 404 WNSMIVGLSQNGSPIEALDLFCNMNKLD------LRMDKFSLASVISACANISSLELGEQVFARVTIIG 466 (496)
Q Consensus 404 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 466 (496)
+..+...+...|++..|...++...+.- -.+....+..|..++.+.|+++.|...++++.+..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3456666667777777777776655421 12345567777777777777777777777776643
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.01 E-value=0.056 Score=38.35 Aligned_cols=67 Identities=13% Similarity=-0.003 Sum_probs=43.1
Q ss_pred CcchhhHHHHHhhhhccCccchhhhhhHHHHHhcc-----CCCchHHHHHHHHHHHhcCChHHHHHHhhhCC
Q 010961 2 DTRIDYLARLLQSCNTHHSIHVGKQLHLHFLKKGI-----LNSTLPIANRLLQMYMRCGNPTDALLLFDEMP 68 (496)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 68 (496)
..++..+..+...+...+++..|...++..++... .+....++..|..+|.+.|++++|+..++++.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566677777777777777777777777666421 12233366666677777777777777666654
No 233
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.81 E-value=1.3 Score=35.91 Aligned_cols=171 Identities=10% Similarity=0.139 Sum_probs=112.8
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 010961 38 NSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAG 117 (496)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (496)
++.. +-...+..+.+.|..+..-.+.+.+..++...-...+.++.+.++.+....+.+.+..+|...-...+.++.+.|
T Consensus 31 ~~~~-vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 31 DSYY-VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp SSHH-HHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHH-HHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3444 556677778888876655566666666777777777888888887666666666666788887788888888888
Q ss_pred ChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHH
Q 010961 118 ELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSH 197 (496)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 197 (496)
+.+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++..+-...+.++.+.+.. .+...+..
T Consensus 110 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~-~~~~~L~~ 181 (211)
T 3ltm_A 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK------DEDGWVRQSAADALGEIGGE-RVRAAMEK 181 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCSH-HHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc------CCCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 8666656666566677777777788888777643 4455555443 25666666777777777764 45555555
Q ss_pred HHHcCCCcchhHHHHHHHHHHhc
Q 010961 198 ILVNGLDFDSVLGSSLVNLYGKC 220 (496)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~ 220 (496)
+.+.+ +..+-...+.++...
T Consensus 182 ~l~d~---~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 182 LAETG---TGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHC---CHHHHHHHHHHHHC-
T ss_pred HHhCC---CHHHHHHHHHHHHhc
Confidence 55543 344444555555443
No 234
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.47 E-value=1.5 Score=35.17 Aligned_cols=166 Identities=9% Similarity=0.137 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHH
Q 010961 43 IANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTA 122 (496)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 122 (496)
+-...+..+.+.+.......+.+.+..++...-...+.++...++.+....+.+.+..++...-...+.++.+.++.+..
T Consensus 30 vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 109 (201)
T 3ltj_A 30 VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 109 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH
Confidence 44455555556565444444555555566655556666666666655555555555556666666666666666665544
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcC
Q 010961 123 RTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 123 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 202 (496)
..+...+..++...-...+.++.+.+.. ++...+..+.. .++..+-...+.++...+..+ +...+..+.+..
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~------d~~~~vr~~A~~aL~~~~~~~-~~~~L~~~l~d~ 181 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK------DEDGWVRQSAADALGEIGGER-VRAAMEKLAETG 181 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT------CSSHHHHHHHHHHHHHHCSHH-HHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc------CCCHHHHHHHHHHHHHhCchh-HHHHHHHHHhCC
Confidence 4455555555655555666666666653 33444444433 145555555566666665543 444444444432
Q ss_pred CCcchhHHHHHHHHHHh
Q 010961 203 LDFDSVLGSSLVNLYGK 219 (496)
Q Consensus 203 ~~~~~~~~~~l~~~~~~ 219 (496)
+..+-...+.++.+
T Consensus 182 ---~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 182 ---TGFARKVAVNYLET 195 (201)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH
Confidence 33333344444433
No 235
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.45 E-value=1.6 Score=35.36 Aligned_cols=126 Identities=12% Similarity=0.185 Sum_probs=69.8
Q ss_pred CChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCc
Q 010961 55 GNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNA 134 (496)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (496)
++.+....+.+.+..++...-...+..+.+.|..+....+.+.+..+|...-...+.++.+.++.+....+.+.+..++.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 95 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG 95 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 33444444455555566666666777777777755555556666667766666666777777765555455555555665
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccch
Q 010961 135 IAWNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAA 187 (496)
Q Consensus 135 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 187 (496)
..-...+.++.+.++.+ +...+..+.. .++...-...+.++...++
T Consensus 96 ~vr~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCcHH-HHHHHHHHHh------CCCHHHHHHHHHHHHHcCC
Confidence 55566666666666532 2333333322 2444444444444444443
No 236
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.09 E-value=0.96 Score=34.27 Aligned_cols=79 Identities=13% Similarity=-0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---chhhHHHHHHHHHHcCCCc--hHHHHHHHHHHHHhcCChhhHHH
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLG---FLEHGKQVHGHACKVGVID--DVIVASALLDTYSKRGMPSDACK 360 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 360 (496)
..+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..+++.+.+.. .| ....+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445555665555553 56666666666777766 6667888888777764 23 34444555666777777887777
Q ss_pred HHHhcc
Q 010961 361 LFSELK 366 (496)
Q Consensus 361 ~~~~~~ 366 (496)
.++.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.49 Score=43.82 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHhcCC----CC-----hHHHHHHHHHHHhcCChhHHHHHHHhcCC------CC----cch
Q 010961 211 SSLVNLYGKCGDFNSANQVLNMMKE----PD-----DFCLSALISGYANCGKMNDARRVFDRTTD------TS----SVM 271 (496)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~ 271 (496)
..|...+...|++.+|..++..+.. .+ ...+..-++.|...+++.+|..++.++.. ++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777777888888877777641 11 23455566677777777777776665421 11 124
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRR 297 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 297 (496)
+..++..+...+++.+|.+.|.+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55556666667777777776666543
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.83 E-value=0.81 Score=34.35 Aligned_cols=107 Identities=13% Similarity=0.023 Sum_probs=66.9
Q ss_pred CchHHHHHHHHHHHHhcCCh------hhHHHHHHhcc---cCchh-hHHHHHH------HHHhcCCHHHHHHHHhhCCC-
Q 010961 336 IDDVIVASALLDTYSKRGMP------SDACKLFSELK---VYDTI-LLNTMIT------VYSSCGRIEDAKHIFRTMPN- 398 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~---~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~- 398 (496)
+.|..++-..+...-+.|++ ++.+++|++.. +|+.. .|...+. .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34667777777777777888 77778887766 33321 1111111 12344788888888887743
Q ss_pred --CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010961 399 --KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVI 443 (496)
Q Consensus 399 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 443 (496)
.=...|......-.++|+...|.+++.+....+..| ...+...+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 223455556666678889999999998888876333 33444433
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.13 E-value=0.34 Score=35.32 Aligned_cols=81 Identities=6% Similarity=-0.068 Sum_probs=56.4
Q ss_pred CHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhh---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCchhhHH
Q 010961 385 RIEDAKHIFRTMP---NKSLISWNSMIVGLSQNGSPIE---ALDLFCNMNKLDLRM--DKFSLASVISACANISSLELGE 456 (496)
Q Consensus 385 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 456 (496)
.+..+.+-|.+.. .++..+--.+.+++.+..+... ++.+++.....+ .| .....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444332 2566676778888888877666 888888887764 34 3445556777889999999999
Q ss_pred HHHHHHHHcC
Q 010961 457 QVFARVTIIG 466 (496)
Q Consensus 457 ~~~~~~~~~~ 466 (496)
+.++.+.+..
T Consensus 95 ~~~~~lL~~e 104 (126)
T 1nzn_A 95 KYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999888743
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.00 E-value=5.6 Score=36.77 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=142.0
Q ss_pred cCccchhhhhhHHHHHh----ccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCC---ChhhHHHHH----HHHHhcC
Q 010961 18 HHSIHVGKQLHLHFLKK----GILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMI----EGFMKLG 86 (496)
Q Consensus 18 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~----~~~~~~~ 86 (496)
.++++.|.+.+-.+.+. +-.++...+...++..+...|+++...+.+.-+.+. -..+...++ ..+....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777666653 233455668889999999999999887666554331 112222233 3332333
Q ss_pred CH--HHHHHHHhhCCC-C---------ChhhHHHHHHHHHhcCChhHHHHHHhhcCC----CC-----cccHHHHHHHHH
Q 010961 87 HK--EKSLQLFNVMPQ-K---------NDFSWNMLISGFAKAGELKTARTLFNDMPR----RN-----AIAWNSMIHCYV 145 (496)
Q Consensus 87 ~~--~~a~~~~~~~~~-~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-----~~~~~~li~~~~ 145 (496)
.. +.-..+.+.... . .......|...+...|++.+|.+++..+.. .+ +..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 32 223344444332 1 122345677888889999999999888752 11 345667778888
Q ss_pred HcCCHHHHHHHHHHHHHchhcc-CCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHcC-CCcchhHH----HHHHHHH
Q 010961 146 RNGFAREAVRLFKELNSDLVER-LQCD--AFILATVIGACADLAALEYGKQIHSHILVNG-LDFDSVLG----SSLVNLY 217 (496)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~----~~l~~~~ 217 (496)
..+++.+|..++++........ ..|+ ...+...+..+...+++..|-+.|.++...- ...+...+ ..++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 9999999999888875321111 1222 2345566677777888888877777665421 11122111 1111111
Q ss_pred HhcCChhhHHHHHHh----cCCCChHHHHHHHHHHHhc--CChhHHHHHHHhcCCCC
Q 010961 218 GKCGDFNSANQVLNM----MKEPDDFCLSALISGYANC--GKMNDARRVFDRTTDTS 268 (496)
Q Consensus 218 ~~~~~~~~a~~~~~~----~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~ 268 (496)
.-.+..+.-..++.. -.-++...+..++.+|... .+++...+.|.....++
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 112221222222222 1224566778888887654 45677777776655443
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.66 E-value=6.2 Score=34.18 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHH
Q 010961 239 FCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALL----LFHKMRRNGVLEDASTLASVLSAC 314 (496)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~~~~~~~~~l~~~~ 314 (496)
..|.++..=|.+.+++++|++++... ...+.+.|+...|-. +++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45555666666666666666554421 233444555544444 234444556666666665555554
Q ss_pred hc
Q 010961 315 SS 316 (496)
Q Consensus 315 ~~ 316 (496)
..
T Consensus 103 ~~ 104 (312)
T 2wpv_A 103 AE 104 (312)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.36 E-value=1.3 Score=40.26 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=37.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHH-----HcCCCchHHHH
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVT-----IIGLDSDQIIS 474 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 474 (496)
.++..+...|++.+|+..+..+.... +-+...+..++.++.+.|+..+|.+.|+.+. +.|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34455555666666666665555431 3355566666666666666666666665442 24666655443
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.08 E-value=0.49 Score=46.66 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHhcCChhHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 111 SGFAKAGELKTARTLFNDMPR--R-NAIAWNSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
+.+...|+++-|+++-++... | +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567888888888877653 4 45688888888888888888888887774
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.95 E-value=7.7 Score=34.94 Aligned_cols=89 Identities=11% Similarity=-0.033 Sum_probs=50.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCchhhHHHHHHHHHH--cCCCchHHHHH---
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMD-----KFSLASVISACANISSLELGEQVFARVTI--IGLDSDQIIST--- 475 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~--- 475 (496)
.++..|...|++.+|.+++.++.+.=-+.| ...+..-+..|...|++.++...+..... ..+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777788888888777777765311111 12355555567777888888877775543 22223332221
Q ss_pred -HHHHHHH-hcCChHHHHHhh
Q 010961 476 -SLVDFYC-KCGFIKMDEYYL 494 (496)
Q Consensus 476 -~l~~~~~-~~g~~~~A~~~~ 494 (496)
.-+..+. ..+++++|...|
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHH
Confidence 2222344 567777776654
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.70 E-value=4.9 Score=42.45 Aligned_cols=64 Identities=5% Similarity=-0.044 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC--HHHHHHHHHHHHccchHHHHHHHHHHHHHc
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCD--AFILATVIGACADLAALEYGKQIHSHILVN 201 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 201 (496)
|..++..+-+.+.++.++++-+...+... ...++ ...|..+.+.+...+++++|...+..+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 44555555566666666655554443200 01111 113455556666666666665555555443
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.29 E-value=3.7 Score=31.44 Aligned_cols=61 Identities=5% Similarity=-0.107 Sum_probs=42.9
Q ss_pred hHHHHHhhhhccCccchhhhhhHHHHHhc-cCCCc------hHHHHHHHHHHHhcCChHHHHHHhhhC
Q 010961 7 YLARLLQSCNTHHSIHVGKQLHLHFLKKG-ILNST------LPIANRLLQMYMRCGNPTDALLLFDEM 67 (496)
Q Consensus 7 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 67 (496)
.+..=++.+...+.++.|..+...++... ..++. +.++..+..++...|++.+|...|++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45556677778888888888888866543 22332 224566778888889999998888874
No 247
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.26 E-value=5.9 Score=31.57 Aligned_cols=176 Identities=12% Similarity=0.138 Sum_probs=82.7
Q ss_pred HhhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHH
Q 010961 63 LFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIH 142 (496)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 142 (496)
+++.+..+|...-...+.++.+.+..+....+.+.+..++...-...+..+.+.|..+....+.+.+..++...-...+.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~ 98 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAV 98 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33344445555555555555555554444445555555565555555555666665544444444444555555555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCC
Q 010961 143 CYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGD 222 (496)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (496)
++.+.++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.. .++..+-...+.++...|+
T Consensus 99 aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 99 ALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHhCcHH-HHHHHHHHHc------CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 666655543 2333333322 244444444555555544432 2222222222 2344455555555555555
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHH
Q 010961 223 FNSANQVLNMMKEPDDFCLSALISGYA 249 (496)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~l~~~~~ 249 (496)
.+....+.+.+.+++...-...+.++.
T Consensus 168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 168 ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333323333333344444334444333
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.24 E-value=16 Score=38.52 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred HHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcC
Q 010961 212 SLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTT 265 (496)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (496)
.++..+...+..+.+..+..-..+ ++...-.+..++...|++++|.+.|.+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 344555556666666655544433 33333455566777777777777776543
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.03 E-value=3.3 Score=40.89 Aligned_cols=51 Identities=14% Similarity=0.008 Sum_probs=35.1
Q ss_pred HHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010961 347 DTYSKRGMPSDACKLFSELK---VYDTILLNTMITVYSSCGRIEDAKHIFRTMP 397 (496)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (496)
+.+...|+++-|+++-++.. +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33455677777777777666 4456677777777777777777777777664
No 250
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.50 E-value=1.9 Score=31.33 Aligned_cols=80 Identities=13% Similarity=-0.056 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhh---HHHHHHHHHHcCCC-chHHHHHHHHHHHHhcCChhhHHHH
Q 010961 286 TEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEH---GKQVHGHACKVGVI-DDVIVASALLDTYSKRGMPSDACKL 361 (496)
Q Consensus 286 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 361 (496)
..+.+-|......| .|+..+--.+..++.+..+... +..++..+.+.+.+ ......-.|.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444444433 2444444445555555544433 55555555554311 1223333344455556666666665
Q ss_pred HHhcc
Q 010961 362 FSELK 366 (496)
Q Consensus 362 ~~~~~ 366 (496)
++.+.
T Consensus 97 ~~~lL 101 (126)
T 1nzn_A 97 VRGLL 101 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.47 E-value=3.3 Score=28.50 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHc
Q 010961 284 EDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKV 333 (496)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 333 (496)
+.-+..+-++.+....+.|++......+++|.+.+++..|..+++-+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666666667777777777777777777777777777766543
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.93 E-value=3.3 Score=28.53 Aligned_cols=67 Identities=7% Similarity=-0.022 Sum_probs=47.9
Q ss_pred Hhccc-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHHH
Q 010961 314 CSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITVY 380 (496)
Q Consensus 314 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 380 (496)
+.+.. +.-+..+-++.+......|++.+..+.+++|.+.+++.-|.++|+.++ .+...+|..+++-.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 33444 455666777777777788888888888888888888888888888777 33445677766543
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.83 E-value=11 Score=32.82 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=78.3
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHH----HHHHHchhccCCcCHHHHHHHHHHHHc
Q 010961 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLF----KELNSDLVERLQCDAFILATVIGACAD 184 (496)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~~~~~~~~~~~p~~~~~~~ll~~~~~ 184 (496)
+..-|.+.+++++|++++.. -...+.+.|+...|.++- +-..+ .++++|......++..+..
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~---~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQ---AGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH---HTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHh
Confidence 44445555556555554422 122333444444433332 22233 3455666655555555543
Q ss_pred cch-----HHHHHHHHHHHHHcC--CCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHH
Q 010961 185 LAA-----LEYGKQIHSHILVNG--LDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDA 257 (496)
Q Consensus 185 ~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (496)
... ..-..+...+-.+.| ..-++.....+...|.+.+++.+|...|-.-.+++...+..++..+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 321 112222333333333 3335566677777888888888887777432233335665555555444432222
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010961 258 RRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMR 296 (496)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 296 (496)
--+ ..-.+-.|...++...|..+++...
T Consensus 187 dlf-----------iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 187 PLY-----------CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHH-----------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111 1112233455666666666555544
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.47 E-value=12 Score=32.66 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHH
Q 010961 369 DTILLNTMITVYSSCGRIEDAKHIFRTMPNKSLISWNSMI 408 (496)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 408 (496)
|+.....+...|.+.+++.+|+..|-.-.+++...+..++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL 174 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARME 174 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHH
Confidence 3444555556666666666666655332223334443333
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.18 E-value=4.7 Score=27.59 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 377 ITVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
+..+...|++++|..+.+...-||...|-.|- -.+.|-.+++...+.++...| .|....|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34567788888888888888888888876553 346787888888777888776 5544444
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.66 E-value=5.1 Score=27.45 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=40.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHH
Q 010961 378 TVYSSCGRIEDAKHIFRTMPNKSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSL 439 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 439 (496)
..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45667788888888888888888887765533 45677777777777777766 4444333
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.17 E-value=32 Score=35.04 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhhhCCCC-------C-------hhhH----HHHHHHHHhcCC--------HHHHHHH
Q 010961 41 LPIANRLLQMYMRCGNPTDALLLFDEMPRR-------N-------CFSW----NAMIEGFMKLGH--------KEKSLQL 94 (496)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~-------~~~~----~~l~~~~~~~~~--------~~~a~~~ 94 (496)
......++.-+.+.+...+|+.+.-+..+- + ...| .-++++....-. ++-+.++
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~I 224 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDF 224 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Confidence 335566666777777777776665555441 1 1222 223333322222 2335556
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCChhHHHHHHhhcC
Q 010961 95 FNVMPQKNDFSWNMLISGFAKAGELKTARTLFNDMP 130 (496)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (496)
|.++..| -|..++.+..+.++.+.+.++|..+.
T Consensus 225 y~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 225 LMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665433 35667777788889999999998864
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.09 E-value=6.4 Score=28.84 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHHhCCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchH
Q 010961 399 KSLISWNSMIVGLSQNGSP---IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQ 471 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 471 (496)
++..+--.+.+++.+..+. .+++.+++...+.+-.-....+-.|.-++.+.|+++.|.+..+.+.+ +.|+-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4555555667777776654 46788888877754111345666677788899999999999988876 44553
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.08 E-value=16 Score=31.59 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=59.3
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHH----HHHHHHchhccCCcCHHHHHHHHHHHH
Q 010961 108 MLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRL----FKELNSDLVERLQCDAFILATVIGACA 183 (496)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~p~~~~~~~ll~~~~ 183 (496)
++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+ .+++++......++..+.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~---~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDL---AEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHH
Confidence 344455555555555555432 12233444554444443 222333 345666655555555544
Q ss_pred ccc-----hHHHHHHHHHHHHHcCC--CcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHH
Q 010961 184 DLA-----ALEYGKQIHSHILVNGL--DFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYA 249 (496)
Q Consensus 184 ~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 249 (496)
... ..+-..+...+-.+.|- .-++.....+...|.+.|++.+|...|-.-...+...+..++.-+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 321 12222333333333332 2245556666666667777777666554222223444444444333
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.65 E-value=27 Score=33.77 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhCCCCChh---hHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh-hhHHHHHHHHHhcCC
Q 010961 44 ANRLLQMYMRCGNPTDALLLFDEMPRRNCF---SWNAMIEGFMKLGHKEKSLQLFNVMPQ-KND-FSWNMLISGFAKAGE 118 (496)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~l~~~~~~~~~ 118 (496)
|.....+ .+.|++..+..+...+..-... .|..+...+ .....++...++++-.. |-. ..-..-+..+.+.++
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 3333333 3567777777776666431112 232222221 22256666666666543 222 122334555667778
Q ss_pred hhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 010961 119 LKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELNSD 163 (496)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 163 (496)
+...+.++.. ...+...-.....+....|+..+|......+-..
T Consensus 88 w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 88 WRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 8887776665 3334445556667777788877777777666653
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.51 E-value=4.3 Score=36.71 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHH-----cCCCcchhHH
Q 010961 138 NSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILV-----NGLDFDSVLG 210 (496)
Q Consensus 138 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 210 (496)
..++..+...|++++++..+..+... .+-+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556666777777777777777652 333566777777777777777777777776543 4777766543
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.99 E-value=7 Score=28.60 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 010961 288 ALLLFHKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHAC 331 (496)
Q Consensus 288 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 331 (496)
..+-++.+....+.|++......+++|-+.+++..|..+++-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.93 E-value=24 Score=31.77 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhcCC--------CChHHHHHHHHHHHhcCC-hhHHHHHHHhcCC---CCcchH-----
Q 010961 210 GSSLVNLYGKCGDFNSANQVLNMMKE--------PDDFCLSALISGYANCGK-MNDARRVFDRTTD---TSSVMW----- 272 (496)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~----- 272 (496)
...|...|.+.|+.++...++..... ......+.++..+....+ .+.-.++..+..+ ..-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777766653 123345556666655332 2223333332221 112233
Q ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcccchhhHHHHHHHHHHc--CCCchHHHHHH
Q 010961 273 -NSMISGYISNNEDTEALLLFHKMRRNGVLED-----ASTLASVLSACSSLGFLEHGKQVHGHACKV--GVIDDVIVASA 344 (496)
Q Consensus 273 -~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 344 (496)
.-++..|...|++.+|..++..+.+.=-..| ...+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 2467889999999999999988876311111 233555566788889999999999887643 22233332221
Q ss_pred ----HHHHHH-hcCChhhHHHHHHhc
Q 010961 345 ----LLDTYS-KRGMPSDACKLFSEL 365 (496)
Q Consensus 345 ----l~~~~~-~~~~~~~a~~~~~~~ 365 (496)
-...+. ..+++..|...|-+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 223345 688999888777654
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.80 E-value=9.2 Score=28.01 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc---cCchhhHHHHHHH
Q 010961 319 FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK---VYDTILLNTMITV 379 (496)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 379 (496)
|.-+..+-++.+....+.|++.+..+.++++.+.+++.-|..+|+.++ .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 344555666666666777888888888888888888888888887776 3445567666654
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.70 E-value=12 Score=27.41 Aligned_cols=68 Identities=12% Similarity=-0.036 Sum_probs=45.9
Q ss_pred CCcCHHHHHHHHHHHHccc---hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCC
Q 010961 168 LQCDAFILATVIGACADLA---ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKE 235 (496)
Q Consensus 168 ~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (496)
-.|+..+-.....++.++. +...+..+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4456655555555555443 5567888888888776433344455677788888999999888888764
No 266
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=82.03 E-value=22 Score=30.00 Aligned_cols=122 Identities=14% Similarity=-0.023 Sum_probs=62.5
Q ss_pred CchHHHHHHHHHHHHhcCChhhHHHHHHhcccCchhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 010961 336 IDDVIVASALLDTYSKRGMPSDACKLFSELKVYDTILLNTMITVYSSCG--RIEDAKHIFRTMPNKSLISWNSMIVGLSQ 413 (496)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 413 (496)
.++..+-...+.++...|+.+..-.+...+..++...-...+.++...| ..+....+...+..++..+-...+.++.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3555555666666766666443333333334556555555566666655 33333344444555676666667777777
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTI 464 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 464 (496)
.|+....-.+...+.+ |+ .-...+.++.+.|+. .+...+..+.+
T Consensus 219 ~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 219 RKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp TTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred hCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 7765444334333332 33 223445556666663 44444444443
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.00 E-value=48 Score=33.80 Aligned_cols=245 Identities=10% Similarity=-0.009 Sum_probs=110.9
Q ss_pred HHHHhcCChhHHHHHHHhcCCC----Cc--chHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 010961 246 SGYANCGKMNDARRVFDRTTDT----SS--VMWNSMISGYISNNEDTEALLLFHKMRRNGV-------LEDASTLASVLS 312 (496)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~l~~ 312 (496)
-+.+..|+.++++.+++..... +. ..=..+.-+....|..++++.++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455677778888888776641 11 1222233344455555567776666554211 011111112222
Q ss_pred HHhcccc-hhhHHHHHHHHHHcCCCchH--HHHHHHHHHHHhcCChhhHHHHHHhccc-CchhhHHHH--HHHHHhcCCH
Q 010961 313 ACSSLGF-LEHGKQVHGHACKVGVIDDV--IVASALLDTYSKRGMPSDACKLFSELKV-YDTILLNTM--ITVYSSCGRI 386 (496)
Q Consensus 313 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l--~~~~~~~~~~ 386 (496)
++.-.|. -+++...+..+....- +.. ..--+|...+...|+.+....++..+.. .+..+...+ .-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222222 2344444444443221 111 1112233334455666666666655442 122222222 2333456666
Q ss_pred HHHHHHHhhCCC-CChh-hHH---HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHH
Q 010961 387 EDAKHIFRTMPN-KSLI-SWN---SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFAR 461 (496)
Q Consensus 387 ~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 461 (496)
+.+..+++.+.. .++. -|. ++..+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 666666555542 2222 222 34455666777666666777766531 22233333333344455666666666655
Q ss_pred HHHcCCCchHHHHHHHHHHHHhcCCh-HHHHHh
Q 010961 462 VTIIGLDSDQIISTSLVDFYCKCGFI-KMDEYY 493 (496)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 493 (496)
+.+.+ .|....-..+.-+....|+. .+|.+.
T Consensus 620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 44432 34444444444444444433 344443
No 268
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.74 E-value=23 Score=29.94 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=21.9
Q ss_pred cchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhc
Q 010961 205 FDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANC 251 (496)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (496)
++..+-...+.++...|+.+..-.+.+.+.+++...-...+.+....
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 45555555556666665544444444444555554444444444443
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.25 E-value=15 Score=27.37 Aligned_cols=70 Identities=9% Similarity=0.108 Sum_probs=49.9
Q ss_pred CChhhHHHHHHHHHhCCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch
Q 010961 399 KSLISWNSMIVGLSQNGSP---IEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470 (496)
Q Consensus 399 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 470 (496)
++..+--.+.+++.+..+. .+++.+++.....+-.-.....-.|.-++.+.|+++.|.+..+.+.+. .|+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 5556666677788877654 468888888877531123445566777899999999999999998884 454
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.72 E-value=5.3 Score=30.16 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=26.2
Q ss_pred HHHHHhhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHH
Q 010961 59 DALLLFDEMPRRN-----CFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLI 110 (496)
Q Consensus 59 ~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 110 (496)
++..+|..|...+ ..-|..-...+-..|++.+|.++|+...+.+......|.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3555555554422 233555555555566666666666655544444333333
No 271
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.07 E-value=21 Score=27.35 Aligned_cols=59 Identities=8% Similarity=-0.078 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCcC-------HHHHHHHHHHHHccchHHHHHHHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQCD-------AFILATVIGACADLAALEYGKQIHSHIL 199 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 199 (496)
.-+..+...|.++.|+-+...+... .+..|+ ..++..+..++...+++..|...|++.+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl--~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTL--SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh--hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344455555555555544443332 112222 1233334445555555555555555543
No 272
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.31 E-value=21 Score=26.50 Aligned_cols=67 Identities=6% Similarity=-0.102 Sum_probs=48.0
Q ss_pred cCchhhHHHHHHHHHhcCCH---HHHHHHHhhCCC--C--ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC
Q 010961 367 VYDTILLNTMITVYSSCGRI---EDAKHIFRTMPN--K--SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMD 435 (496)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 435 (496)
.++..+--.+.+++.+..+. .+++.+++.+.+ | .....-.|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 45666777778888877754 456777776653 3 2233445677889999999999999999986 665
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.56 E-value=24 Score=32.38 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhcCC------CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 105 SWNMLISGFAKAGELKTARTLFNDMPR------RNAIAWNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
+...+...|.+.|+++.|.+.+.++.. .-...+-.+++.+...+++..+...+++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345556666666666666666666542 1223455555666666666666666665544
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.00 E-value=13 Score=34.10 Aligned_cols=94 Identities=5% Similarity=-0.016 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChhhHHHHHHHHHh---CCCCCCHHH--HH
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPN------KSLISWNSMIVGLSQNGSPIEALDLFCNMNK---LDLRMDKFS--LA 440 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~--~~ 440 (496)
+...+..-|.+.|+++.|.+.+.++.. .-...+-..++.+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777777777777777777653 1234556667777777777777777777643 222222211 11
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHc
Q 010961 441 SVISACANISSLELGEQVFARVTII 465 (496)
Q Consensus 441 ~l~~~~~~~g~~~~a~~~~~~~~~~ 465 (496)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112234567777777777776654
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.30 E-value=29 Score=28.59 Aligned_cols=90 Identities=18% Similarity=0.083 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHchhccCCc----CHHHHHHHHHHHHccchHHHHHHHHHHHHHcCCCcchhHHHHHH
Q 010961 139 SMIHCYVRNGFAREAVRLFKELNSDLVERLQC----DAFILATVIGACADLAALEYGKQIHSHILVNGLDFDSVLGSSLV 214 (496)
Q Consensus 139 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 214 (496)
--++.+....++++|++++++.++.. .+.++ +.......++.-.....-..+..+.+.+.. .++.......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l-~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQL-EDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-HhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 35678888999999999998887642 12222 112223333333333334444444444422 33344445555
Q ss_pred HHHHhcCChhhHHHHHHh
Q 010961 215 NLYGKCGDFNSANQVLNM 232 (496)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~ 232 (496)
..+.+.|+.++|..+|-+
T Consensus 99 ~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHH
Confidence 666667777777666643
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=72.01 E-value=48 Score=29.31 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhcCCCC--cchHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010961 240 CLSALISGYANCGKMNDARRVFDRTTDTS--SVMWNSMISGYISNNE--DTEALLLFHKMRRNGVLEDASTLASVLSACS 315 (496)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~ 315 (496)
....++.-|...++.++|...++++..|. ......++......++ -+.+-.++..+.. ++-+.......+...+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle 134 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLK 134 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 45678888999999999999999988765 2333444444333333 2345556666653 55555555555554444
Q ss_pred ccc
Q 010961 316 SLG 318 (496)
Q Consensus 316 ~~~ 318 (496)
...
T Consensus 135 ~ld 137 (358)
T 3eiq_C 135 DLP 137 (358)
T ss_dssp THH
T ss_pred hhh
Confidence 433
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.62 E-value=22 Score=24.44 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=29.9
Q ss_pred HhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010961 249 ANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTL 307 (496)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 307 (496)
...|++++|..+.+...-||...|-++-. .+.|..+++...+.++..+| .|....|
T Consensus 50 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 33444444444444444444555554432 36677777777776776665 4444444
No 278
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.98 E-value=14 Score=30.92 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=29.6
Q ss_pred HhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChhhHHHHHHhcc
Q 010961 314 CSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPSDACKLFSELK 366 (496)
Q Consensus 314 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 366 (496)
..+.|+++.+.+....-++.. +.|...-..+++.+|-.|+++.|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345555666665555555543 4455555566666666666666666555444
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.34 E-value=29 Score=29.10 Aligned_cols=104 Identities=15% Similarity=0.044 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccC
Q 010961 378 TVYSSCGRIEDAKHIFRTMPN--K-SLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDK----FSLASVISACANIS 450 (496)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g 450 (496)
..+.+.|++++++.....-.+ | |...-..|+..+|-.|+++.|.+-++...+. .|+. .+|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~--- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ--- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH---
Confidence 456677888888877766554 3 4555666788888888898888888877765 4443 34454444321
Q ss_pred chhhHHHHHHHHHHcCCCc-----hHHHHHHHHHHHH--hcCChHHHHHh
Q 010961 451 SLELGEQVFARVTIIGLDS-----DQIISTSLVDFYC--KCGFIKMDEYY 493 (496)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~A~~~ 493 (496)
.=.+...-+-.| ...-...|+.+.. ..|+.++|.++
T Consensus 80 -------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~l 122 (273)
T 1zbp_A 80 -------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 122 (273)
T ss_dssp -------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 111222222222 2234455666654 46888887765
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=70.26 E-value=25 Score=25.66 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccc--hHHHHHHHHHHHHHcCCCcc
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADLA--ALEYGKQIHSHILVNGLDFD 206 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 206 (496)
...++.-|...|+.++|.+.++++.. . .-....+...+..++-+.+ ..+.+..++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~---p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV---P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC---G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC---C-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34566677777777777777777643 1 1111223333344444432 24556666666666555433
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.24 E-value=11 Score=28.96 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 100 (496)
-|......+-..|++.+|.++|+...+
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555556666666666665554
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.00 E-value=15 Score=29.23 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCC
Q 010961 23 VGKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPR 69 (496)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (496)
.+..+|..|.+.|+.......|..-...+...|++.+|.++|+.-.+
T Consensus 97 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 97 ESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555544555555555555555555555554443
No 283
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.77 E-value=30 Score=23.81 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHH
Q 010961 187 ALEYGKQIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLS 242 (496)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (496)
..++|..|-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|-
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ 75 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWL 75 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHH
Confidence 34555555555554443 2222222233344556666666666665555544443
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.26 E-value=34 Score=25.86 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHcc--chHHHHHHHHHHHHHcCCCcc
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNSDLVERLQCDAFILATVIGACADL--AALEYGKQIHSHILVNGLDFD 206 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~ 206 (496)
.+.++.-|...|+.++|.+.++++.. . .-....+...+..++-+. ...+.+..++..+.+.|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~---p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV---P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC---G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC---C-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34566777777777777777777743 1 111222333344444442 234556666666666555433
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.07 E-value=15 Score=29.76 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 74 SWNAMIEGFMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 100 (496)
-|......+-..|++.+|.++|+...+
T Consensus 152 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 152 FYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555544
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.28 E-value=60 Score=25.80 Aligned_cols=54 Identities=7% Similarity=-0.129 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCch
Q 010961 417 PIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSD 470 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 470 (496)
..++.++|..|..+|+-- -...|......+...|++.+|..+++.-++.+-.|-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345555555555554433 233444455555555555555555555555554443
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.67 E-value=62 Score=30.25 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-------hhH-HHHHHHHHhcCChhHHHHHHhhcC
Q 010961 73 FSWNAMIEGFMKLGHKEKSLQLFNVMPQKND-------FSW-NMLISGFAKAGELKTARTLFNDMP 130 (496)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 130 (496)
..+|.+++.|...+.++.|..+..+..-|.. ..| -.+.+.+.-.+++.+|.+.|....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4566677777777777777777766654421 111 123445556667777766666543
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.65 E-value=44 Score=27.91 Aligned_cols=82 Identities=11% Similarity=-0.001 Sum_probs=39.8
Q ss_pred HHHHHHhcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCChh
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKAGELK 120 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 120 (496)
.+...+..|+.+-...+++.-..+ +....+. +...+..|+.+-+.-+++.-..++ ...++ .+...+..|+.+
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~ 119 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATP-FLLAAIAGSVKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVK 119 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHH
Confidence 455556667776666666543322 2222222 233345566666666666543322 11112 223334556666
Q ss_pred HHHHHHhhcC
Q 010961 121 TARTLFNDMP 130 (496)
Q Consensus 121 ~a~~~~~~~~ 130 (496)
-+..+++.-.
T Consensus 120 ~~~~Ll~~g~ 129 (285)
T 1wdy_A 120 ALKFLYKRGA 129 (285)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 6666665543
No 289
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=59.82 E-value=33 Score=22.33 Aligned_cols=63 Identities=10% Similarity=0.187 Sum_probs=45.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChH
Q 010961 425 CNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFIK 488 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 488 (496)
+.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 45677888877654 34555666654 67788899999888776667777777788888887543
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.78 E-value=25 Score=29.46 Aligned_cols=238 Identities=8% Similarity=0.004 Sum_probs=125.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHh
Q 010961 242 SALISGYANCGKMNDARRVFDRTTDTSSV---MWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA---STLASVLSACS 315 (496)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~ 315 (496)
...+...++.|+.+....+++.....+.. .-...+...+..|+.+ +++.+.+.|..++. ...+.+ ...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF-LLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH-HHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHHH
Confidence 34566678889999999998876554322 1122344555667764 44445556655432 112222 2233
Q ss_pred cccchhhHHHHHHHHHHcCCCchHHH--HHHHHHHHHhcCChhhHHHHHHhcccCchh------------hHHHHHHHHH
Q 010961 316 SLGFLEHGKQVHGHACKVGVIDDVIV--ASALLDTYSKRGMPSDACKLFSELKVYDTI------------LLNTMITVYS 381 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~l~~~~~ 381 (496)
..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++.. .-.+.+...+
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 445544 4445555665543211 112344455677777666666654322211 1113445556
Q ss_pred hcCCHHHHHHHHhhC-CC---CChhhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCchhh
Q 010961 382 SCGRIEDAKHIFRTM-PN---KSLISWNSMIVGLSQNGSPIEALDLFCNMNKLDLRMDKF---SLASVISACANISSLEL 454 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~ 454 (496)
..|+.+-+..+++.. .. .+....+.+ ...+..|+.....++++.+.+.|..++.. -.+.|. ..+..|+.+-
T Consensus 157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~ 234 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI-LAVEKKHLGL 234 (285)
T ss_dssp HHTCHHHHHHHHHTSCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH-HHHHTTCHHH
T ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH-HHHHcCCHHH
Confidence 678888888888762 22 222223333 33445666666778888888888776543 223333 3344566554
Q ss_pred HHHHHHHHHH-cCCCchHHH--HHHHHHHHHhcCChHHHHHhh
Q 010961 455 GEQVFARVTI-IGLDSDQII--STSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 455 a~~~~~~~~~-~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 494 (496)
++.+.+ .|..++... -.+-+....+.|+.+-+.-++
T Consensus 235 ----v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll 273 (285)
T 1wdy_A 235 ----VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273 (285)
T ss_dssp ----HHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence 444444 565554321 122344445667666555444
No 291
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=55.51 E-value=19 Score=24.72 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=43.3
Q ss_pred hhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010961 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSLQ 93 (496)
Q Consensus 24 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 93 (496)
...++..+.+.|+-...- .. -|.......+.++|.++++.++++++.+|..++.++...|+..-|..
T Consensus 23 ~~~vld~L~~~~vlt~~~--~e-~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 23 VDQLWDVLLSRELFRPHM--IE-DIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CTTTHHHHHHTTSSCHHH--HH-HHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHH--HH-HHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 445777888877542221 11 12211012467888889998888888889988888877777655543
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.17 E-value=44 Score=27.48 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHH
Q 010961 434 MDKFSLASVISACANISSLELGEQVFARV 462 (496)
Q Consensus 434 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 462 (496)
++.......+..+.+.|+.++|.++|=+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34444444455555555555555555444
No 293
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=53.61 E-value=65 Score=24.15 Aligned_cols=62 Identities=8% Similarity=0.183 Sum_probs=42.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
+.+++.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446778877775433 3444455555 6778899999888877666776666667777777754
No 294
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.74 E-value=54 Score=24.39 Aligned_cols=62 Identities=5% Similarity=0.089 Sum_probs=40.7
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
+.+++.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 446677877765432 23344444566778888888887777666666666667777777744
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.58 E-value=66 Score=24.09 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 424 FCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
.+.+++.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456778877765422 34444555567788999999988877666776666667777777754
No 296
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.12 E-value=94 Score=24.62 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHHH---hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-----hhhHHHHHHHHHHcCCC
Q 010961 275 MISGYI---SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF-----LEHGKQVHGHACKVGVI 336 (496)
Q Consensus 275 l~~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 336 (496)
+|+++. +-.+++.|+-++-+|.+.| .|....-..++-+....|. +..|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 455554 4588999999999999999 7766666666666555543 33444445555555543
No 297
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=49.30 E-value=1.3e+02 Score=26.38 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC
Q 010961 78 MIEGFMKLGHKEKSLQLFNVMPQ 100 (496)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~ 100 (496)
++.-|...|+.++|...++++..
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC
Confidence 33334444444444444444433
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.21 E-value=1.5e+02 Score=26.28 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc--chhhHHHHHHHHHHcCCCchHHHH
Q 010961 272 WNSMISGYISNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG--FLEHGKQVHGHACKVGVIDDVIVA 342 (496)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 342 (496)
.+.++.-|...|+.++|.+.++++....+. ...+...+..++-+.+ ..+...+++..+.+.|+-+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 455666677777777777777766432111 1223333444444432 234455666666666655444433
No 299
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=47.71 E-value=1e+02 Score=24.35 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHH---hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 010961 275 MISGYI---SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLG 318 (496)
Q Consensus 275 l~~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 318 (496)
+|+++. +-.+++.|+-++-+|++.|-.|....-..++-+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 445553 45889999999999999998887766666666655544
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.56 E-value=59 Score=27.46 Aligned_cols=141 Identities=8% Similarity=-0.065 Sum_probs=59.6
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcccchhh
Q 010961 246 SGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYISNNEDTEALLLFHKMRRNGVLEDA---STLASVLSACSSLGFLEH 322 (496)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~ 322 (496)
...+..|+.+-+..+++....++...-...+...+..|+.+-+ +.+.+.|..++. .-.+.+.. .+..|+.+-
T Consensus 36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~ 110 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYY-AVDSGNMQT 110 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHHH
Confidence 3344567777777776654443322112233344455554433 333444544432 11222222 233444443
Q ss_pred HHHHHHHHHHcCCCchHHHH---HHHHHHHHhcCChhhHHHHHHhcccC-chhhHHHHHHHHHhcCCHHHHHHHHhh
Q 010961 323 GKQVHGHACKVGVIDDVIVA---SALLDTYSKRGMPSDACKLFSELKVY-DTILLNTMITVYSSCGRIEDAKHIFRT 395 (496)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (496)
+.. +.+.|..++.... .+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-+++.
T Consensus 111 v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 111 VKL----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 333 3333433332111 22333444555555554444443211 111223334444455666665555544
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.41 E-value=59 Score=24.19 Aligned_cols=61 Identities=8% Similarity=0.160 Sum_probs=37.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 425 CNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 425 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
+.+++.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 44566777776542 22333334445 667888888887776666666655566677776643
No 302
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=45.80 E-value=2.2e+02 Score=27.71 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 137 WNSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 137 ~~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
--.+|-.|.|+|+.++|.++.++...
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 44677778888888888888876643
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.64 E-value=2e+02 Score=27.02 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHhcccCch-------hhH-HHHHHHHHhcCCHHHHHHHHhhCCC
Q 010961 338 DVIVASALLDTYSKRGMPSDACKLFSELKVYDT-------ILL-NTMITVYSSCGRIEDAKHIFRTMPN 398 (496)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (496)
...++|.+++.|...+.++.|..+..+..-|.. ..| -.+...+.-.+++.+|.+.|.....
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456778888889999999999999888763321 122 2345566677888888887776553
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.34 E-value=1.7e+02 Score=30.23 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010961 109 LISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGFAREAVRLFKELN 161 (496)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 161 (496)
++..+...|..+-|.++...++. ++..--.+..+|...|++++|.+.|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45556667777777766655554 33333457778888888888888887764
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.29 E-value=91 Score=22.78 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=38.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccC-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 426 NMNKLDLRMDKFSLASVISACANIS-SLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 426 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
.+++.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45667777665433 2334444455 6677888888887776666666666666677776644
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.30 E-value=78 Score=24.12 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=43.9
Q ss_pred hhHHHHHH-HHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHc--CCCchHHHHHHHHHHHHhcCCh
Q 010961 418 IEALDLFC-NMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTII--GLDSDQIISTSLVDFYCKCGFI 487 (496)
Q Consensus 418 ~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 487 (496)
+.+++-+. .+++.|++++.. -..++..+...++.-.|.++++.+.+. +...+..|..--++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33444333 456677777653 344555666667788888888888776 6566665655566777777744
No 307
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.17 E-value=1.3e+02 Score=24.03 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHH---hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-----hhhHHHHHHHHHHcCCC
Q 010961 274 SMISGYI---SNNEDTEALLLFHKMRRNGVLEDASTLASVLSACSSLGF-----LEHGKQVHGHACKVGVI 336 (496)
Q Consensus 274 ~l~~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 336 (496)
.+|+++. +-.+++.|+-++-+|.+.|-.|....-..++-+....|. +..|...++.....|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455554 458899999999999999988877766666666655443 34455555555555644
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.09 E-value=2.1e+02 Score=29.48 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHcCCCch----HHHHHHHHHHHHhcC
Q 010961 438 SLASVISACANISSLELGEQVFARVTIIGLDSD----QIISTSLVDFYCKCG 485 (496)
Q Consensus 438 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 485 (496)
-|..++..+-+.+-++.+.++-+..++.--.-| ...+..++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 677888888889999999998887776422212 246667777776655
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.98 E-value=1.8e+02 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=10.8
Q ss_pred HHHHHHhcCChhHHHHHHhhcCC
Q 010961 109 LISGFAKAGELKTARTLFNDMPR 131 (496)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~ 131 (496)
++.-|...|++++|.+.++++..
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC
Confidence 34444444455555555544443
No 310
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=41.65 E-value=63 Score=23.22 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=23.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCh
Q 010961 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFSWNMLISGFAKAGEL 119 (496)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 119 (496)
++...-...+.++.+.|+.+....+.+.+..+|...-...+.++.+.|+.
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 44444444445555555433333333333335555555555555555543
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.88 E-value=2e+02 Score=25.86 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=39.9
Q ss_pred HHHHHHhcCChHHHHHHhhhCCCCChh--hHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCChhH
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPRRNCF--SWNAMIEGFMKLGHKEKSLQLFNVMPQKN---DFSWNMLISGFAKAGELKT 121 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 121 (496)
.+...+..|+.+-...+++.-..++.. ...+.+...+..|+.+-+.-+++.-...+ .... +.+...+..|+.+-
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~ 95 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNM 95 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHH
Confidence 344455667777766666653332211 11123334455667666666666543321 1111 22333345566665
Q ss_pred HHHHHhhcC
Q 010961 122 ARTLFNDMP 130 (496)
Q Consensus 122 a~~~~~~~~ 130 (496)
+.-+++.-.
T Consensus 96 v~~Ll~~ga 104 (437)
T 1n11_A 96 VKLLLENNA 104 (437)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhCCC
Confidence 555555433
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.70 E-value=1.2e+02 Score=23.17 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHH
Q 010961 418 IEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476 (496)
Q Consensus 418 ~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 476 (496)
+.+.++|..|..+|+-- -...|......+...|++.+|..+++.-++.+-.|-...-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 44777888888887754 355677777778888888888888888888887776554443
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.72 E-value=1.2e+02 Score=22.83 Aligned_cols=60 Identities=7% Similarity=0.021 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHH
Q 010961 418 IEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSL 477 (496)
Q Consensus 418 ~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 477 (496)
+++.++|..|..+|+-- -...|......+...|++.+|..+++.-++.+-.|-...-...
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 45889999999888755 4567888888888899999999999988888888866554433
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.36 E-value=1.1e+02 Score=24.43 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=10.1
Q ss_pred HHhcCChhhHHHHHHhc
Q 010961 217 YGKCGDFNSANQVLNMM 233 (496)
Q Consensus 217 ~~~~~~~~~a~~~~~~~ 233 (496)
.+..|+.+.+..+++.-
T Consensus 16 A~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAG 32 (240)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHcC
Confidence 45566666666666543
No 315
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.13 E-value=2.9e+02 Score=26.89 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=40.1
Q ss_pred HHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHh---CCCHHHHH
Q 010961 213 LVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTDTSSVMWNSMISGYIS---NNEDTEAL 289 (496)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~ 289 (496)
....+.-.|+++.|..++-.....+.+.+...+..+.-.+- ...++..-......-+..||..|.+ ..++.+|+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~gLL~~---~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLFKI---DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHcCCccC---CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Confidence 44555667899999888877643444444444443332221 1111111000112346667776654 47788888
Q ss_pred HHHHHH
Q 010961 290 LLFHKM 295 (496)
Q Consensus 290 ~~~~~m 295 (496)
++|-.+
T Consensus 377 ~Y~~li 382 (661)
T 2qx5_A 377 EYLVLI 382 (661)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 877766
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.09 E-value=1.9e+02 Score=24.82 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCCc--chHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHH
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTDTSS--VMWNSMISGYISNNE--DTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
...++.-|...|+.++|...++++..|.- .....++......++ -+.+-.++..+.. ++-+....
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i 74 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDV 74 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 45778889999999999999999877652 233334444444433 2335556666654 44443333
No 317
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=36.97 E-value=1.6e+02 Score=23.51 Aligned_cols=15 Identities=7% Similarity=-0.232 Sum_probs=6.5
Q ss_pred cccchhhHHHHHHHH
Q 010961 316 SLGFLEHGKQVHGHA 330 (496)
Q Consensus 316 ~~~~~~~a~~~~~~~ 330 (496)
..|+...+.++.+.+
T Consensus 219 ~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 219 LNSQVWSALQMSKAL 233 (237)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.18 E-value=1.9e+02 Score=24.18 Aligned_cols=53 Identities=8% Similarity=-0.144 Sum_probs=23.6
Q ss_pred HHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChhHHHHHHHhcCC
Q 010961 214 VNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMNDARRVFDRTTD 266 (496)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (496)
+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+..+++....
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 87 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLD 87 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 33344455555555555542222111112233344455666655555554433
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.63 E-value=1.4e+02 Score=22.43 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH
Q 010961 285 DTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 285 ~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
.+.+..++..+...|+-+....
T Consensus 61 re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 61 FKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHCCCcCHHHH
Confidence 3456666666666665544433
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.29 E-value=90 Score=20.91 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=40.9
Q ss_pred hhhhhHHHHHhccCCCchHHHHHHHHHHHhcCChHHHHHHhhhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010961 24 GKQLHLHFLKKGILNSTLPIANRLLQMYMRCGNPTDALLLFDEMPRRNCFSWNAMIEGFMKLGHKEKSL 92 (496)
Q Consensus 24 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 92 (496)
...++..+.+.|+-... -...+-. .....++|..+++.+.+.+..+|..++.++.+.+...-|.
T Consensus 24 v~~lld~L~~~~vlt~~--~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTIS--EEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp HHHHHHHHHHHTSSCHH--HHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCCCHH--HHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHH
Confidence 45667777777654322 2222222 3567778888888888888888888888887776544443
No 321
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.76 E-value=76 Score=24.67 Aligned_cols=13 Identities=8% Similarity=0.279 Sum_probs=5.7
Q ss_pred hcCChhHHHHHHH
Q 010961 250 NCGKMNDARRVFD 262 (496)
Q Consensus 250 ~~~~~~~a~~~~~ 262 (496)
..|+.+....++.
T Consensus 14 ~~g~~~~v~~ll~ 26 (201)
T 3hra_A 14 NQRDTKKVKEILQ 26 (201)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HhccHHHHHHHHH
Confidence 3444444444443
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.55 E-value=86 Score=25.73 Aligned_cols=55 Identities=11% Similarity=-0.124 Sum_probs=29.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHh--cccchhhHHHHHHHHH
Q 010961 277 SGYISNNEDTEALLLFHKMRRNGVLEDAS-------TLASVLSACS--SLGFLEHGKQVHGHAC 331 (496)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 331 (496)
...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34456677776666666666555444422 2233333332 4566666666665543
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.25 E-value=1.9e+02 Score=23.48 Aligned_cols=60 Identities=7% Similarity=0.058 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHH
Q 010961 417 PIEALDLFCNMNKLDLRM-DKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTS 476 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 476 (496)
.+.+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|-...-..
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~ 190 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQK 190 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 357778999998888755 456788888888888999999999998888888876544443
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.43 E-value=83 Score=21.39 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=17.2
Q ss_pred ChhhHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 010961 222 DFNSANQVLNMMKEPDDFCLSALISGYANCGKM 254 (496)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (496)
..++|.++++.+...++..|..++.++...|+.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcH
Confidence 455566666665555544555555444443433
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.22 E-value=1e+02 Score=23.38 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHchhccCCcCHHHHHHHHHHHHccchHHHHHHHHHHHHHc--CCCcchhHHHHHHHHHHhcCCh
Q 010961 151 REAVRLFKELNSDLVERLQCDAFILATVIGACADLAALEYGKQIHSHILVN--GLDFDSVLGSSLVNLYGKCGDF 223 (496)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 223 (496)
+.+++-+.+..+. .|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~--~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQ--GGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHH--HTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHH--cCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4445545444443 45665443 234455555556666777777777776 6655655555555666666644
No 326
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=32.86 E-value=1.2e+02 Score=20.73 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHH-----HHcCCCchHHHHHHHH
Q 010961 417 PIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARV-----TIIGLDSDQIISTSLV 478 (496)
Q Consensus 417 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~ 478 (496)
.-.|.++.+++...|+.|+..+..-++..|...+- + +..+.++. ...|..|+....+.+=
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 34578888899999999999999988888877663 2 44433322 2457888877766543
No 327
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.55 E-value=1.4e+02 Score=21.58 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=28.5
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHH
Q 010961 244 LISGYANCGKMNDARRVFDRTTDTS---SVMWNSMISGYISNNE--DTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3344444444444444444443321 1223333344444332 3456667777776665544433
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.87 E-value=2e+02 Score=23.36 Aligned_cols=115 Identities=12% Similarity=-0.031 Sum_probs=62.7
Q ss_pred HhhhhccCccchhhhhhHHHHHhccCCCchHH-----HHHHHHHHH---hcCChHHHHHHhhhCCC--------------
Q 010961 12 LQSCNTHHSIHVGKQLHLHFLKKGILNSTLPI-----ANRLLQMYM---RCGNPTDALLLFDEMPR-------------- 69 (496)
Q Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~---~~~~~~~A~~~~~~~~~-------------- 69 (496)
+...+..|+.+....+++.+.+.|...+.... -.+.+...+ +.|+.+-+..+++.-..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 44556678899999999988887766553310 112233223 55777666666654211
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh----------------HHHHHHHHHhcCChhHHHHHHh
Q 010961 70 RNCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS----------------WNMLISGFAKAGELKTARTLFN 127 (496)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~ 127 (496)
.|..-++.| ...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 89 ~d~~g~t~L-~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRGQTAL-HIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEESBCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCHH-HHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 111223333 33455677777777777654433221 1233344455677776666666
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.61 E-value=1e+02 Score=19.78 Aligned_cols=62 Identities=10% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccc-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 293 HKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 293 ~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
+.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-.
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 346677877776553 4555565554 5677888888888876666666766677777766643
No 330
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=31.55 E-value=1.4e+02 Score=21.25 Aligned_cols=50 Identities=4% Similarity=-0.076 Sum_probs=24.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHhhcCCCCcccHHHHHHHHHHcCC
Q 010961 100 QKNDFSWNMLISGFAKAGELKTARTLFNDMPRRNAIAWNSMIHCYVRNGF 149 (496)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 149 (496)
.+|...-...+.++.+.|+.+....+...+..++...-...+.++.+.|+
T Consensus 53 d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 45555555555555555553333333333334455555555555555554
No 331
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.49 E-value=85 Score=23.07 Aligned_cols=41 Identities=7% Similarity=0.074 Sum_probs=18.9
Q ss_pred HHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcC
Q 010961 445 ACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCG 485 (496)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (496)
.+...++.-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 22 ~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 22 ALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33333444455555555554444444444444444444444
No 332
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.06 E-value=1.2e+02 Score=20.29 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhcCChhhHHHHHHhcCCCChHHHHHHHHHHHhcCChh
Q 010961 193 QIHSHILVNGLDFDSVLGSSLVNLYGKCGDFNSANQVLNMMKEPDDFCLSALISGYANCGKMN 255 (496)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (496)
.+++.+.+.|+- +..-+..+-. .....++|..+++.+...+...|..++.++...+...
T Consensus 26 ~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 26 YIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 455555555543 2222222221 2455677777777777777666666666666655433
No 333
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.89 E-value=2.9e+02 Score=24.75 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHhcCChHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCChh
Q 010961 47 LLQMYMRCGNPTDALLLFDEMPRR---NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKND---FSWNMLISGFAKAGELK 120 (496)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 120 (496)
.+...+..|+.+-+..+++.-... +....+ .+...+..|+.+-+.-+++.-..++. ... +.+...++.|+.+
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~ 127 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVE 127 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCC-CHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHH
Confidence 445556677777766666643322 222222 23334566777766666665443221 111 1233344556666
Q ss_pred HHHHHHhhc
Q 010961 121 TARTLFNDM 129 (496)
Q Consensus 121 ~a~~~~~~~ 129 (496)
.+..+++.-
T Consensus 128 ~v~~Ll~~~ 136 (437)
T 1n11_A 128 TVLALLEKE 136 (437)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 666666543
No 334
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.08 E-value=1.7e+02 Score=23.37 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=8.0
Q ss_pred ccchHHHHHHHHHHHHHcC
Q 010961 184 DLAALEYGKQIHSHILVNG 202 (496)
Q Consensus 184 ~~~~~~~a~~~~~~~~~~~ 202 (496)
..|+.+.+..+++.+.+.|
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 3344444444444443333
No 335
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.65 E-value=1.8e+02 Score=23.14 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=9.3
Q ss_pred hccCccchhhhhhHHHHHhc
Q 010961 16 NTHHSIHVGKQLHLHFLKKG 35 (496)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~ 35 (496)
+..|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 33455555555554444443
No 336
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.63 E-value=1.7e+02 Score=21.72 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=43.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccc-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCChh
Q 010961 293 HKMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMPS 356 (496)
Q Consensus 293 ~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (496)
+.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-..
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446778888776544 3445555555 67789999999988876667766666667777776543
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.41 E-value=1.8e+02 Score=21.70 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=38.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 293 HKMRRNGVLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 293 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445667777665433 34444545556778888888888777666666655566666666644
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.34 E-value=92 Score=22.57 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=18.4
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010961 409 VGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANIS 450 (496)
Q Consensus 409 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 450 (496)
..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333334444455555555555443334444333334444433
No 339
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.33 E-value=2.1e+02 Score=22.63 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=7.9
Q ss_pred HHhcCChhHHHHHHhhc
Q 010961 113 FAKAGELKTARTLFNDM 129 (496)
Q Consensus 113 ~~~~~~~~~a~~~~~~~ 129 (496)
.+..|+++-+..+++.-
T Consensus 49 A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 49 AAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHcC
Confidence 34445555544444443
No 340
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.06 E-value=1.2e+02 Score=24.83 Aligned_cols=116 Identities=9% Similarity=-0.129 Sum_probs=67.7
Q ss_pred HHhhhhccCccchhhhhhHHHHHhccCCCc-----hHHHHHHHHHHHhc---CChHHHHHHhhhCCCC------------
Q 010961 11 LLQSCNTHHSIHVGKQLHLHFLKKGILNST-----LPIANRLLQMYMRC---GNPTDALLLFDEMPRR------------ 70 (496)
Q Consensus 11 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~------------ 70 (496)
.+...+..|+.+....+.+.+.+.|..++. ...-.+.+...+.. |+.+-+..+++.-..+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 345566778899888899988888765443 10112344444555 7777666666542211
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh---------------HHHHHHHHHhcCChhHHHHHHh
Q 010961 71 --NCFSWNAMIEGFMKLGHKEKSLQLFNVMPQKNDFS---------------WNMLISGFAKAGELKTARTLFN 127 (496)
Q Consensus 71 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~ 127 (496)
|..-++.| ...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 85 ~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 85 DEFYQGHSAL-HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp STTTTTCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCHH-HHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 12233333 34456788888888887755432211 1233444556788887777777
No 341
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.75 E-value=2.8e+02 Score=23.82 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCCc---chHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHH
Q 010961 241 LSALISGYANCGKMNDARRVFDRTTDTSS---VMWNSMISGYISNNE--DTEALLLFHKMRRNGVLEDAST 306 (496)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~ 306 (496)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 44566667777777777777777766521 123333333333322 3445566666666555444433
No 342
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.96 E-value=1.3e+02 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 010961 138 NSMIHCYVRNGFAREAVRLFKELNS 162 (496)
Q Consensus 138 ~~li~~~~~~~~~~~a~~~~~~~~~ 162 (496)
..++.-|...|+.++|...++++..
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4566666667777777777776643
No 343
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.88 E-value=1.8e+02 Score=22.15 Aligned_cols=30 Identities=20% Similarity=0.019 Sum_probs=14.9
Q ss_pred CChhhHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 010961 415 GSPIEALDLFCNMNKLDLRM--DKFSLASVIS 444 (496)
Q Consensus 415 g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~ 444 (496)
|++-+|-++|+..=...-.| ....|..||.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ 77 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQ 77 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 55666666665554433233 3344444544
No 344
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.74 E-value=1.8e+02 Score=21.39 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=29.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 406 SMIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 406 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
.++..+...+.+-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3445555566677788888888877655566665555566655553
No 345
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.11 E-value=85 Score=17.74 Aligned_cols=32 Identities=9% Similarity=0.243 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 010961 458 VFARVTIIGLDSDQIISTSLVDFYCKCGFIKMDEYYL 494 (496)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (496)
.++.+.+.|++.+. -..++..+|+++.|.+.+
T Consensus 12 ~v~~L~~MGF~~~~-----a~~AL~~~~n~e~A~~~L 43 (47)
T 2ekk_A 12 QLQQLMDMGFTREH-----AMEALLNTSTMEQATEYL 43 (47)
T ss_dssp HHHHHHHHHCCHHH-----HHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHcCCCHHH-----HHHHHHHcCCHHHHHHHH
Confidence 34555556665432 233444556777777765
No 346
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=26.98 E-value=2e+02 Score=21.68 Aligned_cols=105 Identities=12% Similarity=0.231 Sum_probs=60.4
Q ss_pred ChHHHHHHhhhCCC--CChhhHHHHHHHHH---hcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhc----CC------
Q 010961 56 NPTDALLLFDEMPR--RNCFSWNAMIEGFM---KLGHKEKSLQLFNVMPQ--KNDFSWNMLISGFAKA----GE------ 118 (496)
Q Consensus 56 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~----~~------ 118 (496)
.......+|+.+-. .+..++.-++.++. .....+....+|+.+-. ....++.-+...+... |.
T Consensus 54 ~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~ 133 (183)
T 1s6c_A 54 ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVL 133 (183)
T ss_dssp CHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCc
Confidence 34556667777654 33455555554443 33334555666666543 2233333333333222 32
Q ss_pred -----hhHHHHHHhhcCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 010961 119 -----LKTARTLFNDMPR--RNAIAWNSMIHCYVRNGFAREAVRLFKEL 160 (496)
Q Consensus 119 -----~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 160 (496)
-+.+..+|+.+.. ....+|.-++..+.+....-+.+..|..+
T Consensus 134 ~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 134 KEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp ----CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 2667788888754 35678998988887777777777777653
No 347
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.66 E-value=1e+02 Score=21.05 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 452 LELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
.-.+.++.++....|+.|+..+..-+++.+...+-
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 34567777888888898888888888888877663
No 348
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.55 E-value=3.5e+02 Score=23.91 Aligned_cols=212 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHh
Q 010961 273 NSMISGYISNNEDTEALLLFHKMRRNG-VLEDASTLASVLSACSSLGFLEHGKQVHGHACKVGVIDDVIVASALLDTYSK 351 (496)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (496)
..++.-|...|+.++|.+.++++...+ ..|...........=.+...-+.+-.++..+...++-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cC----ChhhHHHHHHhcc----cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh---------
Q 010961 352 RG----MPSDACKLFSELK----VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN-KSLISWNSMIVGLSQ--------- 413 (496)
Q Consensus 352 ~~----~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~--------- 413 (496)
.. +...|..++.++. ..+..+...+...+...+...-...+++.+.+ .+......+...-.-
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~~sgl~l~~FlPe~ 175 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEI 175 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSCHHHHHHHHHHHTCCSGGGSCGG
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCHHHhCCcc
Q ss_pred CCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhc
Q 010961 414 NGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKC 484 (496)
Q Consensus 414 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 484 (496)
....+...+.++.-.-..+.|-...-..|.......-..++.....+.-.+....+++.....|+.+.++.
T Consensus 176 ~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~ 246 (364)
T 3l6a_A 176 DQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQY 246 (364)
T ss_dssp GCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHH
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.92 E-value=2.3e+02 Score=21.54 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHhhCCC----C--ChhhHHHHHH-H-----HHhCCChhhHHHHHHHHH
Q 010961 382 SCGRIEDAKHIFRTMPN----K--SLISWNSMIV-G-----LSQNGSPIEALDLFCNMN 428 (496)
Q Consensus 382 ~~~~~~~a~~~~~~~~~----~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~m~ 428 (496)
..|++=+|-++|+..=. + ....|..||. . ..+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34888888777776543 3 2344555555 2 123566666666666544
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.60 E-value=2.6e+02 Score=22.08 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=18.0
Q ss_pred HHHHHHccchHHHHHHHHHHHHHcCCCc
Q 010961 178 VIGACADLAALEYGKQIHSHILVNGLDF 205 (496)
Q Consensus 178 ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 205 (496)
.+...+..|+.+.+..+++.+.+.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3445556677777777777777766543
No 351
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.81 E-value=99 Score=23.64 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhCCC--hhhHHHHHHHHHh
Q 010961 372 LLNTMITVYSSCGRIEDAKHIFRTMPNKSLI--SWNSMIVGLSQNGS--PIEALDLFCNMNK 429 (496)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~m~~ 429 (496)
....++.-|...++.++|...++++..|+.. ....+|..-...++ .+.+-.++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3466888899999999999999998876532 22233333333332 2234556666543
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.50 E-value=1.7e+02 Score=21.06 Aligned_cols=39 Identities=5% Similarity=0.115 Sum_probs=20.1
Q ss_pred ccCchhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCC
Q 010961 448 NISSLELGEQVFARVTIIGLDSDQIISTSLVDFYCKCGF 486 (496)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (496)
..+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334455556666666555444444444444555555553
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.32 E-value=1.5e+02 Score=21.67 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=28.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 010961 407 MIVGLSQNGSPIEALDLFCNMNKLDLRMDKFSLASVISACANISS 451 (496)
Q Consensus 407 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 451 (496)
++..+...+.+-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 445555555667788888888777655666665555555555543
No 354
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.22 E-value=3.1e+02 Score=21.71 Aligned_cols=113 Identities=9% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--cccchhhHHHHHHHHHHcCCCchHHHHHH--HHHHHHhcCC----------------hhhHHHHHHh
Q 010961 305 STLASVLSACS--SLGFLEHGKQVHGHACKVGVIDDVIVASA--LLDTYSKRGM----------------PSDACKLFSE 364 (496)
Q Consensus 305 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~----------------~~~a~~~~~~ 364 (496)
..+..+..++. +.+++.+...+++.+.....+.+...... +++.+.+-.. .+.|+.+|+.
T Consensus 24 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~ 103 (211)
T 3bqo_A 24 FLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGS 103 (211)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHH
Q ss_pred cc--------cCchhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCCh
Q 010961 365 LK--------VYDTILLNTMITVYSSCGRIEDAKHIFRTMPN--KSLISWNSMIVGLSQNGSP 417 (496)
Q Consensus 365 ~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 417 (496)
+. ......-...+..|.+.|.+++|.++|++... ++..-...-+....+.+++
T Consensus 104 I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 104 IEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
No 355
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.18 E-value=2.8e+02 Score=21.26 Aligned_cols=54 Identities=7% Similarity=-0.116 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHH---HHHHhccCch-hhHHHHHHHHHH-cCCCchH
Q 010961 418 IEALDLFCNMNKLDLRMDKFSLASV---ISACANISSL-ELGEQVFARVTI-IGLDSDQ 471 (496)
Q Consensus 418 ~~a~~~~~~m~~~~~~p~~~~~~~l---~~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~ 471 (496)
....++.+.+.+.|..++...-..- +...+..|.. ..-..+++.+.+ .|..++.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 3445566666666666665432211 1111111111 223445555555 6666555
No 356
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.90 E-value=2.4e+02 Score=20.39 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccc-chhhHHHHHHHHHHcCCCchHHHHHHHHHHHHhcCCh
Q 010961 294 KMRRNGVLEDASTLASVLSACSSLG-FLEHGKQVHGHACKVGVIDDVIVASALLDTYSKRGMP 355 (496)
Q Consensus 294 ~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (496)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 456677777765443 444455555 6778888888888877666666655566666666543
Done!