BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010962
         (496 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I2S|A Chain A, Crystal Structure Of The Porcine Crw-8 Rotavirus Vp8
           Carbohydrate- Recognising Domain
 pdb|2I2S|B Chain B, Crystal Structure Of The Porcine Crw-8 Rotavirus Vp8
           Carbohydrate- Recognising Domain
 pdb|3TAY|A Chain A, Crystal Structure Of Porcine Rotavirus Crw-8 Vp8 In
           Complex With N- Glycolylneuraminic Acid
 pdb|3TAY|B Chain B, Crystal Structure Of Porcine Rotavirus Crw-8 Vp8 In
           Complex With N- Glycolylneuraminic Acid
          Length = 163

 Score = 30.4 bits (67), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 59  SILDCPYSPLDFNPLDLVWLDTTKLLSAV--------NCWLKCMTLDPYNQTDN 104
           S+LD PY P  FNP    W+     +  V        + WL  + ++P  QT N
Sbjct: 2   SLLDGPYQPTTFNPPTSYWILLAPTVEGVVIQGTNNIDRWLATILIEPNVQTTN 55


>pdb|3SIS|A Chain A, Crystal Structure Of Porcine Crw-8 Rotavirus Vp8 In
           Complex With Aceramido-Gm3_gc
 pdb|3SIS|B Chain B, Crystal Structure Of Porcine Crw-8 Rotavirus Vp8 In
           Complex With Aceramido-Gm3_gc
 pdb|3SIT|A Chain A, Crystal Structure Of Porcine Crw-8 Rotavirus Vp8 In
           Complex With Aceramido-Gm3
 pdb|3SIT|B Chain B, Crystal Structure Of Porcine Crw-8 Rotavirus Vp8 In
           Complex With Aceramido-Gm3
          Length = 163

 Score = 30.4 bits (67), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 59  SILDCPYSPLDFNPLDLVWLDTTKLLSAV--------NCWLKCMTLDPYNQTDN 104
           S+LD PY P  FNP    W+     +  V        + WL  + ++P  QT N
Sbjct: 2   SLLDGPYQPTTFNPPTSYWILLAPTVEGVVIQGTNNIDRWLATILIEPNVQTTN 55


>pdb|2Y4F|A Chain A, X-Ray Crystallographic Structure Of E. Coli Heme-Efeb
 pdb|2Y4F|B Chain B, X-Ray Crystallographic Structure Of E. Coli Heme-Efeb
          Length = 392

 Score = 29.3 bits (64), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 402 WDRPPIKNIFCIYGIDSKTEVGYYFAPSGKPYPDNWIITDVIYEIEGSLFSRSGNLVEGN 461
           WDR P+K    I+G D +T      AP G  +  +  + D   + EG + +   ++   N
Sbjct: 251 WDRTPLKEQQTIFGRDKQTG-----APLGMQHEHD--VPDYASDPEGKVIALDSHIRLAN 303

Query: 462 PGPTSGDETVSLRH-FICDCAFHSKTHLDFG 491
           P     + ++ LR  +       +   LD G
Sbjct: 304 PRTAESESSLMLRRGYSYSLGVTNSGQLDMG 334


>pdb|2Y4D|A Chain A, X-Ray Crystallographic Structure Of E. Coli Apo-Efeb
 pdb|2Y4D|B Chain B, X-Ray Crystallographic Structure Of E. Coli Apo-Efeb
 pdb|2Y4E|A Chain A, X-Ray Crystallographic Structure Of E. Coli Ppix-Efeb
 pdb|2Y4E|B Chain B, X-Ray Crystallographic Structure Of E. Coli Ppix-Efeb
          Length = 403

 Score = 29.3 bits (64), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 402 WDRPPIKNIFCIYGIDSKTEVGYYFAPSGKPYPDNWIITDVIYEIEGSLFSRSGNLVEGN 461
           WDR P+K    I+G D +T      AP G  +  +  + D   + EG + +   ++   N
Sbjct: 262 WDRTPLKEQQTIFGRDKQTG-----APLGMQHEHD--VPDYASDPEGKVIALDSHIRLAN 314

Query: 462 PGPTSGDETVSLRH-FICDCAFHSKTHLDFG 491
           P     + ++ LR  +       +   LD G
Sbjct: 315 PRTAESESSLMLRRGYSYSLGVTNSGQLDMG 345


>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
           Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
           Complex With Sto-609
          Length = 298

 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 202 FRYFLEWLKLEIPPKQYIKWLDEHIH-AYFAVGSPFLGATQSVKATLSGETSGLPVSEGT 260
           + ++ + +  +I P   +   D HI  A F V + F G+   +  T+       P S   
Sbjct: 152 YLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSE 211

Query: 261 ARLMFNSFGSSLWMMPFSKYC 281
            R +F+     +W M  + YC
Sbjct: 212 TRKIFSGKALDVWAMGVTLYC 232


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,085,179
Number of Sequences: 62578
Number of extensions: 791761
Number of successful extensions: 1409
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1409
Number of HSP's gapped (non-prelim): 6
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)