Query 010964
Match_columns 496
No_of_seqs 211 out of 423
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 06:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 4E-25 8.6E-30 225.1 8.9 70 260-330 230-299 (526)
2 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 5E-24 1.1E-28 164.9 7.1 50 353-402 1-50 (51)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 5.5E-21 1.2E-25 149.9 6.5 56 265-320 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.1 0.0011 2.4E-08 49.3 5.4 48 267-318 1-48 (48)
5 PF14379 Myb_CC_LHEQLE: MYB-CC 87.9 1 2.2E-05 35.9 4.5 38 368-406 6-43 (51)
6 smart00426 TEA TEA domain. 75.5 3 6.4E-05 35.1 3.0 17 269-285 5-21 (68)
7 PF15235 GRIN_C: G protein-reg 74.5 2.1 4.6E-05 40.1 2.2 20 374-393 70-89 (137)
8 PF01519 DUF16: Protein of unk 64.1 17 0.00038 32.7 5.5 43 362-404 50-96 (102)
9 smart00717 SANT SANT SWI3, AD 55.5 49 0.0011 22.8 5.6 43 268-316 2-45 (49)
10 cd07645 I-BAR_IMD_BAIAP2L1 Inv 52.5 40 0.00086 34.2 6.4 46 353-399 63-118 (226)
11 KOG3101 Esterase D [General fu 50.9 11 0.00023 38.7 2.2 53 172-226 34-93 (283)
12 cd00167 SANT 'SWI3, ADA2, N-Co 50.6 60 0.0013 22.1 5.4 44 269-317 1-44 (45)
13 PF12776 Myb_DNA-bind_3: Myb/S 50.6 22 0.00047 29.2 3.6 51 269-319 1-63 (96)
14 TIGR02894 DNA_bind_RsfA transc 50.1 2.3E+02 0.005 27.6 10.8 53 260-319 41-94 (161)
15 cd07644 I-BAR_IMD_BAIAP2L2 Inv 49.4 47 0.001 33.5 6.3 40 356-396 66-115 (215)
16 smart00501 BRIGHT BRIGHT, ARID 47.1 20 0.00043 30.1 3.0 46 272-318 32-84 (93)
17 PF01285 TEA: TEA/ATTS domain 46.5 25 0.00054 38.2 4.3 54 263-317 45-112 (431)
18 cd07646 I-BAR_IMD_IRSp53 Inver 35.0 1.3E+02 0.0027 30.8 6.8 46 353-398 65-119 (232)
19 PF07384 DUF1497: Protein of u 29.3 46 0.00099 27.1 2.2 22 268-289 36-57 (59)
20 PRK10803 tol-pal system protei 28.5 1.5E+02 0.0032 29.8 6.2 39 361-400 54-93 (263)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.91 E-value=4e-25 Score=225.15 Aligned_cols=70 Identities=43% Similarity=0.655 Sum_probs=63.2
Q ss_pred CcCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhhhhccCCcchhhh
Q 010964 260 SATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEK 330 (496)
Q Consensus 260 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p~~~~~~ 330 (496)
....+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++...++..
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaE 299 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAE 299 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhh
Confidence 344789999999999999999999996 7999999999999999999999999999999998876655543
No 2
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.90 E-value=5e-24 Score=164.86 Aligned_cols=50 Identities=64% Similarity=0.879 Sum_probs=48.1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Q 010964 353 SIQFTEALRMQMEVQKQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDG 402 (496)
Q Consensus 353 ~~qitEALrmQmEVQkrLHEQLEVQR~LQLRIEaqGKYLqsiLek~qk~~ 402 (496)
+++|+||||+||||||||||||||||+||+|||||||||++|||+++++.
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~ 50 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL 50 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999875
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.83 E-value=5.5e-21 Score=149.92 Aligned_cols=56 Identities=61% Similarity=0.976 Sum_probs=54.3
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhhhh
Q 010964 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRLA 320 (496)
Q Consensus 265 KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 320 (496)
|+|++||+|+|++||+||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.12 E-value=0.0011 Score=49.28 Aligned_cols=48 Identities=33% Similarity=0.347 Sum_probs=41.4
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhhh
Q 010964 267 RMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYR 318 (496)
Q Consensus 267 RlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~GLT~~hVKSHLQKYR 318 (496)
|..||+|=+++|++||.++|.- .-+.|.+.|+ .|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5789999999999999999632 6889999998 8999999999999985
No 5
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=87.88 E-value=1 Score=35.95 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCcc
Q 010964 368 KQLHEQLEVQRALQLRIEEHARYLEKIVAEQQKDGSATI 406 (496)
Q Consensus 368 krLHEQLEVQR~LQLRIEaqGKYLqsiLek~qk~~~~~~ 406 (496)
.-|..|+||||.|.=.+|.| |-||.-+|.+.+-...++
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~~il 43 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQSIL 43 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence 56888999999999999988 677877765555544443
No 6
>smart00426 TEA TEA domain.
Probab=75.50 E-value=3 Score=35.11 Aligned_cols=17 Identities=29% Similarity=0.790 Sum_probs=16.0
Q ss_pred ccCHHHHHHHHHHHHhh
Q 010964 269 RWTPELHECFVEAVNKL 285 (496)
Q Consensus 269 rWT~ELH~rFV~AV~qL 285 (496)
.|.++|-..|++|+...
T Consensus 5 vWp~~lE~Af~~aL~~~ 21 (68)
T smart00426 5 VWSPDIEQAFQEALAIY 21 (68)
T ss_pred cCcHHHHHHHHHHHHHc
Confidence 69999999999999987
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=74.51 E-value=2.1 Score=40.09 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 010964 374 LEVQRALQLRIEEHARYLEK 393 (496)
Q Consensus 374 LEVQR~LQLRIEaqGKYLqs 393 (496)
+.||+||+++||+|++.+..
T Consensus 70 ~AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 70 MAIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 35799999999999876543
No 8
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=64.13 E-value=17 Score=32.74 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhcCCC
Q 010964 362 MQMEVQKQLHEQLEVQ----RALQLRIEEHARYLEKIVAEQQKDGSA 404 (496)
Q Consensus 362 mQmEVQkrLHEQLEVQ----R~LQLRIEaqGKYLqsiLek~qk~~~~ 404 (496)
.|.|==++|-+..+.| +.||.+|.+||+-|++|++.-+.....
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 889999999999999999876665544
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=55.50 E-value=49 Score=22.76 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=33.1
Q ss_pred cccCHHHHHHHHHHHHhhC-CCCCCchHHHHhhcCCCCccHHHHHHHHhh
Q 010964 268 MRWTPELHECFVEAVNKLD-GPEKATPKAVLKLMNVEGLTIYHVKSHLQK 316 (496)
Q Consensus 268 lrWT~ELH~rFV~AV~qLG-G~ekAtPK~IL~lM~V~GLT~~hVKSHLQK 316 (496)
-.||++=...|+.+|.++| + .=+.|-+.|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~----~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN----NWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC----CHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999996 3 3466766665 6777788776544
No 10
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=52.48 E-value=40 Score=34.18 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=35.4
Q ss_pred ccChHHHHHHHH-HHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHHHHH
Q 010964 353 SIQFTEALRMQM-EVQKQLHEQLEVQ---------RALQLRIEEHARYLEKIVAEQQ 399 (496)
Q Consensus 353 ~~qitEALrmQm-EVQkrLHEQLEVQ---------R~LQLRIEaqGKYLqsiLek~q 399 (496)
+..|.++| ||| ||+|+++.|||.. ..|.-.+|..-|||...+++-|
T Consensus 63 SkeLG~~L-~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq 118 (226)
T cd07645 63 SKELGHVL-MEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQ 118 (226)
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666 555 9999999998855 6788899999999997765544
No 11
>KOG3101 consensus Esterase D [General function prediction only]
Probab=50.90 E-value=11 Score=38.66 Aligned_cols=53 Identities=25% Similarity=0.413 Sum_probs=44.5
Q ss_pred CCCCCCCCC-------CCCccccccccccccchhhhhhhccccccccCCCCCCCchhhccCC
Q 010964 172 FPEDASDGS-------FPGVTCMGERLGLNEHLELQFLSDELDIDITDHGENPRLDEIYDAP 226 (496)
Q Consensus 172 fs~~~s~gs-------~~g~~~~~~~~~~~eq~ewQflsdql~i~ItD~~~~P~~d~i~~~p 226 (496)
||.+++.+- +-|++|+-++ |.++.-||+-++.++|+|+--+..||-.+|-+.+
T Consensus 34 lPp~a~~~k~~P~lf~LSGLTCT~~N--fi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~ 93 (283)
T KOG3101|consen 34 LPPDAPRGKRCPVLFYLSGLTCTHEN--FIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDD 93 (283)
T ss_pred cCCCcccCCcCceEEEecCCcccchh--hHhhhhHHHhHhhcCeEEECCCCCCCccccCCCc
Confidence 455665552 3589998877 9999999999999999999999999999988775
No 12
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=50.59 E-value=60 Score=22.06 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcCCCCccHHHHHHHHhhh
Q 010964 269 RWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKY 317 (496)
Q Consensus 269 rWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~V~GLT~~hVKSHLQKY 317 (496)
.||.+=+..|+.++.++|- ..=+.|-+.|+ +=|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999972 23566777774 46777888776543
No 13
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=50.57 E-value=22 Score=29.17 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=33.8
Q ss_pred ccCHHHHHHHHHHHHhh---CCC-CCCchH-----HHHhhcCC---CCccHHHHHHHHhhhhh
Q 010964 269 RWTPELHECFVEAVNKL---DGP-EKATPK-----AVLKLMNV---EGLTIYHVKSHLQKYRL 319 (496)
Q Consensus 269 rWT~ELH~rFV~AV~qL---GG~-ekAtPK-----~IL~lM~V---~GLT~~hVKSHLQKYRl 319 (496)
+||++..+-||+.+-.. |+- .....| .|.+.|+- -.+|..+|++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988543 433 233333 34555542 45788999999876544
No 14
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.08 E-value=2.3e+02 Score=27.57 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=39.3
Q ss_pred CcCCCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhcC-CCCccHHHHHHHHhhhhh
Q 010964 260 SATAHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMN-VEGLTIYHVKSHLQKYRL 319 (496)
Q Consensus 260 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM~-V~GLT~~hVKSHLQKYRl 319 (496)
+.+....+|||...+-.++.+||...- .-.|. .+. ...||+..|-+-||.|..
T Consensus 41 ~RTsAACGFRWNs~VRkqY~~~i~~AK----kqRk~---~~~~~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 41 NRTAAACGFRWNAYVRKQYEEAIELAK----KQRKE---LKREAGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cccHHHhcchHHHHHHHHHHHHHHHHH----HHHhc---cccCcccCCHHHHHHHHHHHHh
Confidence 345667899999999999999998751 11111 122 366999999999999874
No 15
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=49.38 E-value=47 Score=33.47 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=27.6
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHH
Q 010964 356 FTEALRMQM-EVQKQLHEQLEVQ---------RALQLRIEEHARYLEKIVA 396 (496)
Q Consensus 356 itEALrmQm-EVQkrLHEQLEVQ---------R~LQLRIEaqGKYLqsiLe 396 (496)
+.++| ||| ||+|+|+.|||+. .+|.-..|---|||+.-++
T Consensus 66 LG~vL-mqisev~r~i~~~le~~lk~FH~ell~~LEkk~elD~kyi~~s~K 115 (215)
T cd07644 66 LGEIL-IQMSETQRKLSADLEVVFQTFHVDLLQHMDKNTKLDMQFIEDSRR 115 (215)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555 666 9999999999966 4455555666667665543
No 16
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=47.09 E-value=20 Score=30.07 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHhhcCCCCc---cHHHHHHHHhhhh
Q 010964 272 PELHECFVEAVNKLDGPEKAT----PKAVLKLMNVEGL---TIYHVKSHLQKYR 318 (496)
Q Consensus 272 ~ELH~rFV~AV~qLGG~ekAt----PK~IL~lM~V~GL---T~~hVKSHLQKYR 318 (496)
-+|++.|. +|..+||.+..+ =+.|.+.||++.- ...++|+|-.||=
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L 84 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYL 84 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHh
Confidence 47999998 599999987543 4678889998752 3466788877773
No 17
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=46.51 E-value=25 Score=38.18 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=28.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCchHHHHhhc-C-------------CCCccHHHHHHHHhhh
Q 010964 263 AHKPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLM-N-------------VEGLTIYHVKSHLQKY 317 (496)
Q Consensus 263 ~~KpRlrWT~ELH~rFV~AV~qLGG~ekAtPK~IL~lM-~-------------V~GLT~~hVKSHLQKY 317 (496)
..+..-+|.+++...|++|+...=-..++. -.+...| | =.-=|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k-~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRK-LSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS----HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcc-cccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 467888999999999999998762111222 1111111 1 0336788899999998
No 18
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=35.01 E-value=1.3e+02 Score=30.84 Aligned_cols=46 Identities=28% Similarity=0.417 Sum_probs=35.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHHHH
Q 010964 353 SIQFTEALRMQMEVQKQLHEQLEVQ---------RALQLRIEEHARYLEKIVAEQ 398 (496)
Q Consensus 353 ~~qitEALrmQmEVQkrLHEQLEVQ---------R~LQLRIEaqGKYLqsiLek~ 398 (496)
+..|..||.-=-||+|.++.+||++ ..|+-++|..-|||...+++-
T Consensus 65 SkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky 119 (232)
T cd07646 65 SKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKY 119 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666644338999998888876 679999999999999776554
No 19
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=29.29 E-value=46 Score=27.13 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.3
Q ss_pred cccCHHHHHHHHHHHHhhCCCC
Q 010964 268 MRWTPELHECFVEAVNKLDGPE 289 (496)
Q Consensus 268 lrWT~ELH~rFV~AV~qLGG~e 289 (496)
-.+..|+|..|-+-|.+|||-+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 3578999999999999999854
No 20
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.51 E-value=1.5e+02 Score=29.85 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 010964 361 RMQMEVQKQLHEQ-LEVQRALQLRIEEHARYLEKIVAEQQK 400 (496)
Q Consensus 361 rmQmEVQkrLHEQ-LEVQR~LQLRIEaqGKYLqsiLek~qk 400 (496)
++|+|+|.+|.+. .|| +.|+=.||++..-|+.|+++|..
T Consensus 54 ~~~~~l~~ql~~lq~ev-~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDI-DSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence 4566777777553 333 56888899999999999965554
Done!