Query 010965
Match_columns 496
No_of_seqs 159 out of 245
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 3E-171 6E-176 1335.7 29.1 414 1-427 58-478 (478)
2 PF15468 DUF4636: Domain of un 52.6 8.2 0.00018 38.9 1.7 39 200-243 25-63 (243)
3 COG3114 CcmD Heme exporter pro 41.0 59 0.0013 27.3 4.7 43 230-272 9-60 (67)
4 TIGR03777 RPE4 Rickettsial pal 25.6 31 0.00066 25.2 0.6 9 278-286 24-32 (32)
5 PF13198 DUF4014: Protein of u 22.3 1.7E+02 0.0036 25.1 4.4 31 223-262 19-49 (72)
6 TIGR01106 ATPase-IIC_X-K sodiu 21.7 2.3E+02 0.005 34.1 7.1 42 282-323 809-852 (997)
7 PF15444 TMEM247: Transmembran 19.3 1.2E+02 0.0025 30.3 3.4 23 92-114 193-215 (218)
8 PF15031 DUF4528: Domain of un 18.3 27 0.00058 32.3 -1.1 35 173-207 43-82 (126)
9 PF09878 DUF2105: Predicted me 18.3 97 0.0021 31.1 2.6 47 209-260 158-207 (212)
10 PF01956 DUF106: Integral memb 13.8 99 0.0022 28.8 1.4 30 78-108 6-36 (168)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=2.6e-171 Score=1335.71 Aligned_cols=414 Identities=61% Similarity=1.062 Sum_probs=388.7
Q ss_pred CchhHHHHHHhhchhccccccccccCCCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhh--ccccccc-CCCcc
Q 010965 1 MVLGFISLILTFGQSYISKICIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQHRYLAA--AATSTEC-EKGSE 77 (496)
Q Consensus 1 MLLGFISLLLTv~q~~IskICIp~~~~~~mlPC~~~~~~~~~~~~~~~~~~~~~ll~~~RR~La~--~~~~~~C-~~Gkv 77 (496)
|||||||||||++|++|+|||||++++++|+||+.+++.++.+ ++ . .+||+|+. +++.++| +||||
T Consensus 58 MlLGfiSLlLt~~q~~IskICIp~~~~~~~lPC~~~~~~~~~~-----~~-~-----~~r~ll~~~~~~~~~~C~~kGkv 126 (478)
T PF03094_consen 58 MLLGFISLLLTVFQNPISKICIPSSYASTMLPCKPPEESSKEG-----SS-H-----NRRRLLASGAAEGSDYCPKKGKV 126 (478)
T ss_pred HHHHHHHHHHHHHHHhHhHeecChhHHhcccCCCCcccccccc-----cc-h-----hhhhhhhhhcccccCcccccCcc
Confidence 8999999999999999999999999999999998654433211 01 1 35777763 3357899 67999
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccccCCCCCceeeeeeccccccccCCCCCc
Q 010965 78 PLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKKWEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRI 157 (496)
Q Consensus 78 pliS~~gLHQLHIFIFvLAv~HV~Ys~~Tm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~r~r~~~qtsF~r~h~~~ws~~ 157 (496)
||+|.|||||||||||||||+||+||++||+||++|||+||+||+|+++++|+..+||+|+|++||++|+|+|+++|+++
T Consensus 127 pliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~ 206 (478)
T PF03094_consen 127 PLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKS 206 (478)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhHHhhhccCcchhhHHHHHHhHhhhhcCCCCCCcHHHHHHHHhhhccccceecchhHHHHHHHHHHhccccch
Q 010965 158 PFFFYVGCFFRQFFRSVSRADYLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWH 237 (496)
Q Consensus 158 ~~l~wi~cFfRQF~~SV~k~DYltLR~GFI~~H~~~~~kFDFhkYi~RsLEdDFk~VVGIS~~lW~~vvlFLLlnv~Gw~ 237 (496)
+++.|++|||||||+||+|+||+|||+|||++|++++++|||||||+||||||||+||||||+||++||+|||+|++|||
T Consensus 207 ~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~ 286 (478)
T PF03094_consen 207 PVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWH 286 (478)
T ss_pred hhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccCcccccCCCcccccCCChHHHHHHHHHHhhhhhhhHHHHHh
Q 010965 238 ALFWASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHLIHFALFQNAFQITYFFWI 317 (496)
Q Consensus 238 ~yfWlsfiPliliLlVGtKLq~IIt~lalei~e~~~vv~G~p~V~psD~~FWF~rP~llL~LIHfiLFQNAFelAfF~W~ 317 (496)
+|||++|||++++|+||||||+||++||+||+|++++++|+|+|+|+|++|||+||+|||+||||||||||||||||+|+
T Consensus 287 ~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~ 366 (478)
T PF03094_consen 287 TYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWI 366 (478)
T ss_pred eEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccccccceehhhhhhhccccccccccchhhHHHHhhccccccccccHHHHHHHHHHHHHHHhhhcCCCCC-
Q 010965 318 WYSFSLKSCFHANFTLAIMKVALGVGVLFLCSYITLPLYALVTQMGSQMKKSIFDEQTSKALKRWHMAVKKRKKRGKSS- 396 (496)
Q Consensus 318 w~~fG~~SCf~~~~~~ii~Rl~~Gv~vQ~LCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~~~akkk~~~~~~~- 396 (496)
||+||++||||++.+++++|+++|+++|++|||+|||||||||||||+||++||+|+|++||++||++||||++.++++
T Consensus 367 ~~~~g~~sC~~~~~~~~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~~~ 446 (478)
T PF03094_consen 367 WWQFGFDSCFMENTEYIIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKSAH 446 (478)
T ss_pred HhcCCCceeEecCccceeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred ---CCCCCCCCCCCCCccccCCccccccccccCC
Q 010965 397 ---TRTLGESVSPSPSTVYSSGGHTLHRFKTTGH 427 (496)
Q Consensus 397 ---~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 427 (496)
+++.++++ ++|++++||+|+||||+++++
T Consensus 447 ~~~~~~~~~~~--~~~~~~~S~~~ll~~~~~~~~ 478 (478)
T PF03094_consen 447 SGSTTPGSSRS--TTPSRGSSPVHLLHRFKTRSD 478 (478)
T ss_pred CCCCCCCCCCC--CCCCCCCCchhhhccCCCCCC
Confidence 22223333 688999999999999999753
No 2
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=52.64 E-value=8.2 Score=38.94 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=28.0
Q ss_pred HHHHHHHhhhccccceecchhHHHHHHHHHHhccccchhhhhhh
Q 010965 200 QKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWAS 243 (496)
Q Consensus 200 hkYi~RsLEdDFk~VVGIS~~lW~~vvlFLLlnv~Gw~~yfWls 243 (496)
+.|=.| +||+..++| +..||-||+|++|.=. .+.++|++
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 444444 899999988 7899999988876532 45666654
No 3
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=41.03 E-value=59 Score=27.29 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=26.3
Q ss_pred Hhccccchhhhhhhh----HHHHHHHHhh-----hhhHHHHHHHHHHHHhhc
Q 010965 230 LLNVNGWHALFWASL----IPLIIILAIG-----TELQSILTKMALEISERH 272 (496)
Q Consensus 230 Llnv~Gw~~yfWlsf----iPliliLlVG-----tKLq~IIt~lalei~e~~ 272 (496)
++|..|...|.|+++ +|++++++.- +-|+.|.-+.|-|..-+.
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aReaR~~~ 60 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREARLRA 60 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888889776 6666544433 235556666666654443
No 4
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=25.63 E-value=31 Score=25.22 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=7.2
Q ss_pred cccccCCCc
Q 010965 278 IPLVQGSDQ 286 (496)
Q Consensus 278 ~p~V~psD~ 286 (496)
+|||||+|+
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 578888885
No 5
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=22.34 E-value=1.7e+02 Score=25.05 Aligned_cols=31 Identities=23% Similarity=0.620 Sum_probs=23.0
Q ss_pred HHHHHHHHhccccchhhhhhhhHHHHHHHHhhhhhHHHHH
Q 010965 223 TSFVVFLLLNVNGWHALFWASLIPLIIILAIGTELQSILT 262 (496)
Q Consensus 223 ~~vvlFLLlnv~Gw~~yfWlsfiPliliLlVGtKLq~IIt 262 (496)
+|.++|+++ -++..|++++.++|--.|.++.
T Consensus 19 LF~ilfIvl---------mipI~pll~~~~i~~~~E~l~e 49 (72)
T PF13198_consen 19 LFFILFIVL---------MIPISPLLFVWIIGKIIEPLFE 49 (72)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566777765 2889999999999985555544
No 6
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=21.65 E-value=2.3e+02 Score=34.08 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=31.9
Q ss_pred cCCC--cccccCCChHHHHHHHHHHhhhhhhhHHHHHhhhhcCC
Q 010965 282 QGSD--QYFWFGRPQLVLHLIHFALFQNAFQITYFFWIWYSFSL 323 (496)
Q Consensus 282 ~psD--~~FWF~rP~llL~LIHfiLFQNAFelAfF~W~w~~fG~ 323 (496)
+|++ +=..++++.++..++-..++|-.++++.|+|.++.+|+
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~ 852 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGF 852 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4544 34667777777777777889999999999998877664
No 7
>PF15444 TMEM247: Transmembrane protein 247
Probab=19.31 E-value=1.2e+02 Score=30.32 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 010965 92 IFFLAVFHVLYSAITMMLGRLKI 114 (496)
Q Consensus 92 IFvLAv~HV~Ys~~Tm~Lg~~Ki 114 (496)
||+|--=|-+||+.+++|+..|.
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 56777789999999999999884
No 8
>PF15031 DUF4528: Domain of unknown function (DUF4528)
Probab=18.33 E-value=27 Score=32.28 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=25.2
Q ss_pred CcchhhHHHHHHh---HhhhhcCCCC--CCcHHHHHHHHh
Q 010965 173 SVSRADYLTLRNG---FINVHLAPGS--KFNFQKYIKRSL 207 (496)
Q Consensus 173 SV~k~DYltLR~G---FI~~H~~~~~--kFDFhkYi~RsL 207 (496)
.|..+.|.-||-| ||..||...+ +.++.+-.-|.|
T Consensus 43 ~v~g~NYhILRTGCfPfiKYHCtkrp~qdL~~ed~ff~~i 82 (126)
T PF15031_consen 43 TVDGSNYHILRTGCFPFIKYHCTKRPPQDLSFEDRFFTAI 82 (126)
T ss_pred ccCCceEEEEeecCccceeeeecCCChhhcchHHHHHHHH
Confidence 5888999999998 9999997555 555544444433
No 9
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=18.31 E-value=97 Score=31.13 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=28.1
Q ss_pred hccccceecchhHHHHHHHHHHhccccchhhhhhhhHHH---HHHHHhhhhhHHH
Q 010965 209 DDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWASLIPL---IIILAIGTELQSI 260 (496)
Q Consensus 209 dDFk~VVGIS~~lW~~vvlFLLlnv~Gw~~yfWlsfiPl---iliLlVGtKLq~I 260 (496)
|-...+-||.|-+|++.-+..++. .-+|+.++=+ -+++=||+|+-.|
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~~-----P~~Wl~~L~lAg~gl~iKV~sKlgLI 207 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFLF-----PQYWLLALMLAGCGLLIKVGSKLGLI 207 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHhcchhhhhhhhhhhh
Confidence 345667888899997654333332 3456655432 3566788887654
No 10
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=13.81 E-value=99 Score=28.82 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=20.0
Q ss_pred cccchhhhhHHHHHHHHHHHH-HHHHHHHHHH
Q 010965 78 PLITVEALHQLHILIFFLAVF-HVLYSAITMM 108 (496)
Q Consensus 78 pliS~~gLHQLHIFIFvLAv~-HV~Ys~~Tm~ 108 (496)
|++. -.+.-+++.||++|+. |.+-..++-.
T Consensus 6 p~i~-~~~~P~~i~v~~~~~~~~~~s~l~~~~ 36 (168)
T PF01956_consen 6 PLIR-WVLLPITIVVFLIAILRGLISELLQKF 36 (168)
T ss_pred chHh-hhhcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666 6778889999999854 4444444433
Done!