Query 010966
Match_columns 496
No_of_seqs 599 out of 3895
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 4.1E-86 8.9E-91 725.2 46.8 478 1-482 174-705 (737)
2 TIGR02437 FadB fatty oxidation 100.0 3.2E-84 6.8E-89 709.0 50.0 473 1-477 166-679 (714)
3 TIGR02440 FadJ fatty oxidation 100.0 5.6E-83 1.2E-87 699.4 47.1 475 1-482 162-668 (699)
4 PRK11730 fadB multifunctional 100.0 9.2E-83 2E-87 699.2 47.2 476 1-480 166-682 (715)
5 PRK11154 fadJ multifunctional 100.0 5.3E-82 1.1E-86 693.3 46.4 477 1-484 167-677 (708)
6 COG1250 FadB 3-hydroxyacyl-CoA 100.0 1.1E-70 2.3E-75 537.1 29.6 280 146-425 2-285 (307)
7 KOG2304 3-hydroxyacyl-CoA dehy 100.0 9.5E-70 2.1E-74 490.4 18.2 280 145-424 9-298 (298)
8 PRK07819 3-hydroxybutyryl-CoA 100.0 2.9E-64 6.3E-69 498.0 31.2 279 145-423 3-286 (286)
9 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.2E-61 2.5E-66 511.2 31.6 282 146-427 4-289 (503)
10 PRK08268 3-hydroxy-acyl-CoA de 100.0 3.4E-60 7.3E-65 501.6 32.1 283 144-426 4-290 (507)
11 PRK08293 3-hydroxybutyryl-CoA 100.0 1.3E-59 2.9E-64 466.7 31.2 279 146-424 2-287 (287)
12 PRK09260 3-hydroxybutyryl-CoA 100.0 5.9E-59 1.3E-63 462.4 32.1 281 147-427 1-284 (288)
13 PRK05808 3-hydroxybutyryl-CoA 100.0 1.5E-58 3.3E-63 458.2 30.5 277 147-423 3-282 (282)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 2.6E-58 5.6E-63 458.5 31.1 278 146-423 2-290 (291)
15 PLN02545 3-hydroxybutyryl-CoA 100.0 5.4E-58 1.2E-62 457.2 32.6 283 146-428 3-288 (295)
16 PRK07530 3-hydroxybutyryl-CoA 100.0 1.3E-57 2.8E-62 453.8 31.8 281 146-426 3-286 (292)
17 PRK08269 3-hydroxybutyryl-CoA 100.0 2.4E-56 5.2E-61 445.9 30.4 269 158-426 1-285 (314)
18 PRK07066 3-hydroxybutyryl-CoA 100.0 1.7E-56 3.7E-61 445.1 25.9 278 145-426 5-299 (321)
19 PRK06130 3-hydroxybutyryl-CoA 100.0 7.7E-49 1.7E-53 394.4 30.9 279 145-428 2-287 (311)
20 KOG1683 Hydroxyacyl-CoA dehydr 100.0 2.4E-47 5.3E-52 370.2 13.7 319 158-481 1-352 (380)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 2.5E-41 5.4E-46 338.9 29.7 263 146-408 1-274 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 6.3E-41 1.4E-45 309.0 21.2 180 149-328 1-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 5.6E-38 1.2E-42 332.9 26.7 244 146-393 3-254 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 2.2E-34 4.7E-39 261.1 15.5 229 147-378 3-242 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 5.4E-29 1.2E-33 263.9 16.7 165 251-422 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 1.7E-26 3.8E-31 191.5 7.0 94 330-423 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 5.2E-22 1.1E-26 210.1 26.5 118 293-410 378-498 (503)
28 COG2084 MmsB 3-hydroxyisobutyr 99.8 1.6E-17 3.5E-22 161.5 18.9 189 148-365 1-211 (286)
29 TIGR01505 tartro_sem_red 2-hyd 99.7 4.4E-17 9.6E-22 162.3 17.1 187 149-365 1-209 (291)
30 PRK11559 garR tartronate semia 99.7 2.9E-16 6.3E-21 156.8 19.1 188 147-365 2-212 (296)
31 PRK07417 arogenate dehydrogena 99.7 9.4E-16 2E-20 151.7 21.0 155 148-327 1-167 (279)
32 KOG0409 Predicted dehydrogenas 99.6 2E-14 4.4E-19 137.4 19.0 192 146-366 34-247 (327)
33 PRK11199 tyrA bifunctional cho 99.6 8.7E-15 1.9E-19 150.3 17.6 171 146-357 97-277 (374)
34 PLN02688 pyrroline-5-carboxyla 99.6 2.6E-14 5.6E-19 140.6 20.1 185 148-362 1-202 (266)
35 PRK12491 pyrroline-5-carboxyla 99.6 1.4E-13 2.9E-18 135.4 19.8 189 148-362 3-205 (272)
36 PRK15461 NADH-dependent gamma- 99.6 1.1E-13 2.4E-18 138.0 19.4 183 148-362 2-207 (296)
37 PRK11880 pyrroline-5-carboxyla 99.6 2.1E-13 4.5E-18 134.2 20.4 189 147-362 2-203 (267)
38 PF03446 NAD_binding_2: NAD bi 99.6 2.9E-14 6.3E-19 129.7 12.8 146 147-325 1-160 (163)
39 PRK07679 pyrroline-5-carboxyla 99.5 2.4E-13 5.1E-18 134.6 18.6 189 147-362 3-207 (279)
40 PRK15059 tartronate semialdehy 99.5 3.9E-13 8.5E-18 133.7 18.4 189 148-365 1-209 (292)
41 PRK06545 prephenate dehydrogen 99.5 1.9E-13 4E-18 140.0 16.4 176 148-345 1-195 (359)
42 TIGR02441 fa_ox_alpha_mit fatt 99.5 1.8E-14 4E-19 159.3 9.0 106 309-421 625-737 (737)
43 TIGR01692 HIBADH 3-hydroxyisob 99.5 3.3E-13 7.2E-18 134.2 17.0 181 152-365 1-206 (288)
44 PLN02350 phosphogluconate dehy 99.5 8.5E-13 1.8E-17 138.8 19.2 191 146-362 5-225 (493)
45 PRK08507 prephenate dehydrogen 99.5 1.1E-12 2.3E-17 129.7 19.0 153 148-327 1-168 (275)
46 PRK08655 prephenate dehydrogen 99.5 1.6E-12 3.4E-17 136.3 20.0 154 148-326 1-162 (437)
47 COG0287 TyrA Prephenate dehydr 99.5 1.4E-12 2.9E-17 127.9 16.8 156 147-326 3-170 (279)
48 PTZ00142 6-phosphogluconate de 99.5 2.1E-12 4.6E-17 135.6 18.7 189 147-362 1-219 (470)
49 TIGR00872 gnd_rel 6-phosphoglu 99.5 5.3E-12 1.2E-16 126.1 19.7 189 148-362 1-209 (298)
50 TIGR03026 NDP-sugDHase nucleot 99.4 2E-12 4.3E-17 135.1 16.9 202 148-362 1-244 (411)
51 PRK07502 cyclohexadienyl dehyd 99.4 4.1E-12 8.9E-17 127.6 17.9 157 146-326 5-178 (307)
52 PRK09599 6-phosphogluconate de 99.4 9.4E-12 2E-16 124.6 20.0 183 148-362 1-211 (301)
53 cd05297 GH4_alpha_glucosidase_ 99.4 3.3E-14 7.1E-19 148.3 2.0 159 148-322 1-185 (423)
54 COG0345 ProC Pyrroline-5-carbo 99.4 2.9E-12 6.3E-17 123.8 14.6 152 147-325 1-158 (266)
55 PLN02256 arogenate dehydrogena 99.4 5.7E-12 1.2E-16 125.7 17.2 153 147-326 36-203 (304)
56 PRK12490 6-phosphogluconate de 99.4 9.8E-12 2.1E-16 124.3 18.7 183 148-362 1-210 (299)
57 PRK06928 pyrroline-5-carboxyla 99.4 1.5E-11 3.3E-16 121.5 19.0 153 147-324 1-160 (277)
58 PRK11064 wecC UDP-N-acetyl-D-m 99.4 2.1E-11 4.6E-16 127.1 20.6 198 147-362 3-248 (415)
59 PRK11154 fadJ multifunctional 99.4 5.2E-13 1.1E-17 147.8 7.9 88 327-421 613-706 (708)
60 PRK12557 H(2)-dependent methyl 99.4 2.8E-11 6.1E-16 122.4 19.7 205 159-386 32-260 (342)
61 TIGR02440 FadJ fatty oxidation 99.4 5.9E-13 1.3E-17 147.1 7.9 88 327-421 606-699 (699)
62 PRK07680 late competence prote 99.4 3.8E-11 8.2E-16 118.5 19.5 152 148-326 1-158 (273)
63 PRK00094 gpsA NAD(P)H-dependen 99.4 4E-11 8.7E-16 121.3 18.8 196 147-360 1-238 (325)
64 PRK15057 UDP-glucose 6-dehydro 99.4 1.5E-11 3.2E-16 126.8 15.6 199 148-362 1-233 (388)
65 PRK05479 ketol-acid reductoiso 99.3 3E-11 6.4E-16 120.7 17.1 184 148-357 18-224 (330)
66 PLN02858 fructose-bisphosphate 99.3 2.6E-11 5.7E-16 141.9 19.4 186 148-365 5-217 (1378)
67 PLN02858 fructose-bisphosphate 99.3 3.7E-11 8.1E-16 140.6 19.8 190 146-365 323-537 (1378)
68 PLN02888 enoyl-CoA hydratase 99.3 8E-12 1.7E-16 122.6 10.1 100 1-136 163-264 (265)
69 PLN02600 enoyl-CoA hydratase 99.3 7.3E-12 1.6E-16 122.0 9.4 96 1-132 152-247 (251)
70 PRK06476 pyrroline-5-carboxyla 99.3 1.3E-10 2.8E-15 113.8 18.2 182 148-362 1-194 (258)
71 TIGR00873 gnd 6-phosphoglucona 99.3 7.8E-11 1.7E-15 123.9 17.4 186 149-362 1-216 (467)
72 PRK08818 prephenate dehydrogen 99.3 3.8E-11 8.3E-16 122.1 14.5 137 148-326 5-154 (370)
73 PRK12478 enoyl-CoA hydratase; 99.3 6.3E-12 1.4E-16 125.3 8.7 96 1-132 173-277 (298)
74 TIGR00465 ilvC ketol-acid redu 99.3 4.4E-11 9.6E-16 119.6 14.6 204 148-380 4-231 (314)
75 PRK08150 enoyl-CoA hydratase; 99.3 1.1E-11 2.4E-16 121.0 10.0 97 1-133 156-252 (255)
76 PRK07634 pyrroline-5-carboxyla 99.3 2.7E-10 5.8E-15 110.6 19.4 189 147-362 4-207 (245)
77 PRK05862 enoyl-CoA hydratase; 99.3 9.1E-12 2E-16 121.8 9.2 96 1-132 158-253 (257)
78 PTZ00082 L-lactate dehydrogena 99.3 1.4E-11 2.9E-16 124.0 10.0 126 147-284 6-153 (321)
79 PRK05980 enoyl-CoA hydratase; 99.3 1.1E-11 2.4E-16 121.5 9.1 96 1-132 164-259 (260)
80 TIGR02280 PaaB1 phenylacetate 99.3 1.2E-11 2.6E-16 120.9 9.3 96 1-132 157-252 (256)
81 PRK07938 enoyl-CoA hydratase; 99.3 9.4E-12 2E-16 121.0 8.5 95 1-131 155-249 (249)
82 PRK08138 enoyl-CoA hydratase; 99.3 1.4E-11 3.1E-16 120.6 9.8 96 1-132 162-257 (261)
83 PRK07658 enoyl-CoA hydratase; 99.3 1.6E-11 3.6E-16 120.0 10.1 96 1-132 158-253 (257)
84 PRK08139 enoyl-CoA hydratase; 99.3 1.5E-11 3.3E-16 120.8 9.7 96 1-132 167-262 (266)
85 KOG1680 Enoyl-CoA hydratase [L 99.3 9.9E-12 2.1E-16 117.6 7.7 97 1-133 191-287 (290)
86 PRK08258 enoyl-CoA hydratase; 99.3 1.8E-11 3.8E-16 121.1 9.7 97 1-133 178-274 (277)
87 PRK15182 Vi polysaccharide bio 99.3 2.7E-10 5.9E-15 118.8 18.8 199 148-362 7-244 (425)
88 TIGR01915 npdG NADPH-dependent 99.3 2.3E-10 4.9E-15 109.2 16.8 163 148-327 1-189 (219)
89 PRK06143 enoyl-CoA hydratase; 99.2 2.1E-11 4.5E-16 119.1 9.4 94 1-130 163-256 (256)
90 PRK08140 enoyl-CoA hydratase; 99.2 2.4E-11 5.2E-16 119.2 9.8 96 1-132 163-258 (262)
91 PRK07799 enoyl-CoA hydratase; 99.2 2.6E-11 5.6E-16 119.0 9.9 96 1-132 164-259 (263)
92 PRK09076 enoyl-CoA hydratase; 99.2 2.4E-11 5.3E-16 118.8 9.6 96 1-132 159-254 (258)
93 PRK06495 enoyl-CoA hydratase; 99.2 2.2E-11 4.9E-16 119.0 9.2 96 1-132 158-253 (257)
94 PRK08252 enoyl-CoA hydratase; 99.2 2.6E-11 5.6E-16 118.3 9.3 96 1-132 155-250 (254)
95 PRK09674 enoyl-CoA hydratase-i 99.2 3.6E-11 7.7E-16 117.4 10.0 96 1-132 156-251 (255)
96 PRK06127 enoyl-CoA hydratase; 99.2 3.4E-11 7.3E-16 118.5 9.9 96 1-132 170-265 (269)
97 PRK05809 3-hydroxybutyryl-CoA 99.2 2.7E-11 5.8E-16 118.7 9.1 96 1-132 161-256 (260)
98 PRK07468 enoyl-CoA hydratase; 99.2 3.3E-11 7.1E-16 118.2 9.7 96 1-132 163-258 (262)
99 PLN03214 probable enoyl-CoA hy 99.2 2.6E-11 5.6E-16 119.7 8.9 99 1-135 172-270 (278)
100 PRK06563 enoyl-CoA hydratase; 99.2 2.9E-11 6.2E-16 118.1 9.1 96 1-132 156-251 (255)
101 cd01339 LDH-like_MDH L-lactate 99.2 2.8E-11 6.1E-16 121.1 9.2 122 150-283 1-139 (300)
102 PRK05981 enoyl-CoA hydratase; 99.2 3.3E-11 7.1E-16 118.5 9.3 96 1-132 167-262 (266)
103 PRK14806 bifunctional cyclohex 99.2 3E-10 6.4E-15 127.5 17.7 156 147-326 3-176 (735)
104 PLN02664 enoyl-CoA hydratase/d 99.2 4.1E-11 8.9E-16 118.3 9.4 96 1-132 175-271 (275)
105 PRK07657 enoyl-CoA hydratase; 99.2 4.4E-11 9.4E-16 117.2 9.4 96 1-132 161-256 (260)
106 PRK11730 fadB multifunctional 99.2 2E-11 4.4E-16 135.3 7.9 85 329-421 624-714 (715)
107 PTZ00431 pyrroline carboxylate 99.2 2E-10 4.4E-15 112.5 14.1 145 148-324 4-153 (260)
108 PRK06210 enoyl-CoA hydratase; 99.2 3.6E-11 7.9E-16 118.6 8.7 97 1-132 172-268 (272)
109 PRK09245 enoyl-CoA hydratase; 99.2 4.5E-11 9.8E-16 117.5 9.4 96 1-132 167-262 (266)
110 PRK06494 enoyl-CoA hydratase; 99.2 4E-11 8.6E-16 117.4 8.9 96 1-132 158-255 (259)
111 PRK06142 enoyl-CoA hydratase; 99.2 4E-11 8.8E-16 118.2 9.0 96 1-132 173-269 (272)
112 PRK07511 enoyl-CoA hydratase; 99.2 4.7E-11 1E-15 117.0 9.3 96 1-132 162-257 (260)
113 PRK05995 enoyl-CoA hydratase; 99.2 5.7E-11 1.2E-15 116.5 9.7 96 1-132 162-258 (262)
114 PTZ00117 malate dehydrogenase; 99.2 7.4E-11 1.6E-15 118.8 10.4 125 148-284 6-147 (319)
115 PRK06223 malate dehydrogenase; 99.2 9.1E-11 2E-15 117.8 10.4 125 147-283 2-143 (307)
116 COG1004 Ugd Predicted UDP-gluc 99.2 1.2E-09 2.5E-14 109.3 18.0 202 148-361 1-241 (414)
117 TIGR02437 FadB fatty oxidation 99.2 3.4E-11 7.4E-16 133.2 7.9 85 329-421 624-714 (714)
118 PRK06688 enoyl-CoA hydratase; 99.2 7.2E-11 1.6E-15 115.7 9.3 96 1-132 160-255 (259)
119 COG0677 WecC UDP-N-acetyl-D-ma 99.2 3.3E-09 7E-14 105.7 20.5 201 148-362 10-251 (436)
120 PRK08229 2-dehydropantoate 2-r 99.2 3.7E-10 8.1E-15 115.1 14.5 166 147-329 2-179 (341)
121 PRK08184 benzoyl-CoA-dihydrodi 99.2 3.4E-11 7.4E-16 128.5 6.9 95 2-132 446-544 (550)
122 TIGR03222 benzo_boxC benzoyl-C 99.2 3.6E-11 7.7E-16 128.0 7.0 96 1-132 441-540 (546)
123 PRK08259 enoyl-CoA hydratase; 99.2 9.4E-11 2E-15 114.4 9.3 93 1-130 157-249 (254)
124 PRK03580 carnitinyl-CoA dehydr 99.2 7.5E-11 1.6E-15 115.6 8.7 96 1-132 158-257 (261)
125 PRK07659 enoyl-CoA hydratase; 99.2 6.7E-11 1.5E-15 115.9 8.2 95 1-132 162-256 (260)
126 PLN02712 arogenate dehydrogena 99.2 5.7E-10 1.2E-14 122.3 16.1 154 146-326 368-536 (667)
127 PRK07260 enoyl-CoA hydratase; 99.2 1E-10 2.2E-15 114.2 9.3 94 1-130 162-255 (255)
128 PRK05674 gamma-carboxygeranoyl 99.2 9E-11 1.9E-15 115.2 8.6 96 1-132 164-260 (265)
129 PRK14619 NAD(P)H-dependent gly 99.1 8.9E-10 1.9E-14 110.7 15.9 139 148-330 5-158 (308)
130 PRK14618 NAD(P)H-dependent gly 99.1 9.1E-10 2E-14 111.7 15.2 162 147-327 4-178 (328)
131 COG0240 GpsA Glycerol-3-phosph 99.1 2.5E-10 5.4E-15 112.5 10.7 168 147-331 1-182 (329)
132 COG2085 Predicted dinucleotide 99.1 2E-09 4.4E-14 99.4 15.8 153 147-327 1-180 (211)
133 TIGR01929 menB naphthoate synt 99.1 9.6E-11 2.1E-15 114.7 7.7 95 1-132 161-255 (259)
134 PRK07396 dihydroxynaphthoic ac 99.1 1.4E-10 3.1E-15 114.3 8.8 95 1-132 171-265 (273)
135 PF02153 PDH: Prephenate dehyd 99.1 1.6E-09 3.4E-14 106.0 15.9 141 162-326 1-157 (258)
136 PRK09120 p-hydroxycinnamoyl Co 99.1 1.9E-10 4.1E-15 113.5 9.4 95 1-131 168-265 (275)
137 PF01210 NAD_Gly3P_dh_N: NAD-d 99.1 1.5E-10 3.2E-15 104.6 7.8 105 149-265 1-106 (157)
138 PRK05864 enoyl-CoA hydratase; 99.1 2.1E-10 4.5E-15 113.4 9.1 96 1-132 174-271 (276)
139 PRK11423 methylmalonyl-CoA dec 99.1 1.8E-10 3.8E-15 112.9 8.5 96 1-132 160-257 (261)
140 PLN02921 naphthoate synthase 99.1 2.6E-10 5.6E-15 114.8 8.9 95 1-132 225-319 (327)
141 TIGR01724 hmd_rel H2-forming N 99.1 2.6E-09 5.6E-14 104.5 14.9 147 159-326 32-193 (341)
142 PRK08321 naphthoate synthase; 99.1 3.7E-10 7.9E-15 112.9 8.7 95 1-132 200-294 (302)
143 TIGR03210 badI 2-ketocyclohexa 99.1 3.9E-10 8.5E-15 110.1 8.7 95 1-132 158-252 (256)
144 PRK06144 enoyl-CoA hydratase; 99.0 4.6E-10 1E-14 110.1 8.4 92 1-132 167-258 (262)
145 PLN02712 arogenate dehydrogena 99.0 6.4E-09 1.4E-13 114.1 17.8 153 147-326 52-219 (667)
146 PRK06023 enoyl-CoA hydratase; 99.0 6.2E-10 1.4E-14 108.4 8.5 91 1-128 161-251 (251)
147 PRK12439 NAD(P)H-dependent gly 99.0 7.4E-09 1.6E-13 105.4 16.3 178 145-338 5-195 (341)
148 PRK08260 enoyl-CoA hydratase; 99.0 8.7E-10 1.9E-14 110.0 8.9 97 1-133 177-275 (296)
149 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 1.8E-09 3.9E-14 100.0 10.3 107 148-267 1-124 (185)
150 PF00378 ECH: Enoyl-CoA hydrat 99.0 6.2E-10 1.3E-14 108.1 7.1 92 1-128 154-245 (245)
151 PRK07509 enoyl-CoA hydratase; 99.0 1E-09 2.2E-14 107.7 8.6 94 1-132 166-259 (262)
152 PRK05870 enoyl-CoA hydratase; 99.0 6.7E-10 1.4E-14 108.1 7.2 90 1-128 159-249 (249)
153 PF03807 F420_oxidored: NADP o 99.0 1.3E-09 2.7E-14 89.8 7.7 91 149-263 1-95 (96)
154 PLN02353 probable UDP-glucose 99.0 2.7E-08 5.9E-13 104.9 19.4 203 147-362 1-252 (473)
155 PRK06072 enoyl-CoA hydratase; 99.0 1.6E-09 3.6E-14 105.3 9.4 93 1-132 152-244 (248)
156 TIGR03189 dienoyl_CoA_hyt cycl 99.0 1.8E-09 3.9E-14 105.1 9.4 94 1-132 152-247 (251)
157 PRK09287 6-phosphogluconate de 99.0 1.5E-08 3.2E-13 106.4 16.5 177 158-362 1-208 (459)
158 PRK05617 3-hydroxyisobutyryl-C 99.0 8.2E-10 1.8E-14 112.1 6.9 133 1-134 163-323 (342)
159 PRK07327 enoyl-CoA hydratase; 99.0 1.6E-09 3.5E-14 106.6 8.5 92 1-132 170-264 (268)
160 PRK07112 polyketide biosynthes 99.0 2E-09 4.3E-14 105.2 8.6 93 1-132 159-251 (255)
161 PRK07827 enoyl-CoA hydratase; 99.0 2E-09 4.3E-14 105.5 8.7 94 1-132 164-257 (260)
162 PF10727 Rossmann-like: Rossma 98.9 4.6E-09 9.9E-14 90.7 8.5 115 147-285 10-127 (127)
163 PRK07854 enoyl-CoA hydratase; 98.9 4.6E-09 9.9E-14 101.8 9.1 90 1-132 150-239 (243)
164 TIGR01763 MalateDH_bact malate 98.9 5.2E-09 1.1E-13 104.7 9.6 123 148-283 2-142 (305)
165 PLN02874 3-hydroxyisobutyryl-C 98.9 1.6E-09 3.5E-14 111.4 5.0 135 1-136 168-338 (379)
166 PRK07110 polyketide biosynthes 98.9 7.5E-09 1.6E-13 100.7 9.0 89 1-125 158-246 (249)
167 PRK14620 NAD(P)H-dependent gly 98.8 5.1E-08 1.1E-12 98.8 14.6 174 148-340 1-192 (326)
168 PRK06190 enoyl-CoA hydratase; 98.8 1.6E-08 3.5E-13 98.8 9.2 94 1-130 158-254 (258)
169 PTZ00345 glycerol-3-phosphate 98.8 1.3E-07 2.7E-12 96.5 15.8 169 148-331 12-207 (365)
170 COG1024 CaiD Enoyl-CoA hydrata 98.8 1.8E-08 3.8E-13 98.6 9.2 93 1-131 162-255 (257)
171 cd00650 LDH_MDH_like NAD-depen 98.8 1.8E-08 3.9E-13 98.9 9.2 96 150-259 1-116 (263)
172 TIGR03376 glycerol3P_DH glycer 98.8 1.5E-07 3.2E-12 95.3 15.9 166 149-330 1-197 (342)
173 PRK06522 2-dehydropantoate 2-r 98.8 1.3E-07 2.7E-12 94.8 14.8 162 148-327 1-174 (304)
174 COG1023 Gnd Predicted 6-phosph 98.8 5E-07 1.1E-11 84.2 16.7 183 148-362 1-210 (300)
175 PRK12921 2-dehydropantoate 2-r 98.8 1.6E-07 3.4E-12 94.2 14.6 165 148-328 1-178 (305)
176 COG0362 Gnd 6-phosphogluconate 98.7 7.8E-07 1.7E-11 88.6 18.7 195 147-365 3-223 (473)
177 COG0447 MenB Dihydroxynaphthoi 98.7 6.1E-09 1.3E-13 94.9 3.7 93 2-132 181-274 (282)
178 PRK06444 prephenate dehydrogen 98.7 2.6E-07 5.6E-12 86.1 14.1 114 148-326 1-120 (197)
179 PRK06249 2-dehydropantoate 2-r 98.7 2.3E-07 4.9E-12 93.5 14.4 170 146-331 4-190 (313)
180 TIGR02354 thiF_fam2 thiamine b 98.7 3.5E-08 7.6E-13 92.5 6.3 104 148-259 22-142 (200)
181 PF00056 Ldh_1_N: lactate/mala 98.6 4.9E-07 1.1E-11 80.0 12.5 100 148-263 1-119 (141)
182 TIGR00112 proC pyrroline-5-car 98.6 1.4E-06 3.1E-11 84.5 16.2 167 170-362 9-185 (245)
183 KOG1682 Enoyl-CoA isomerase [L 98.6 1.3E-07 2.9E-12 85.3 6.5 96 1-132 188-283 (287)
184 PRK12480 D-lactate dehydrogena 98.5 3.1E-07 6.7E-12 92.9 9.4 100 148-275 147-249 (330)
185 COG4007 Predicted dehydrogenas 98.5 8.8E-06 1.9E-10 76.6 18.2 147 159-326 33-194 (340)
186 COG1893 ApbA Ketopantoate redu 98.5 5.7E-06 1.2E-10 82.8 18.3 166 148-327 1-176 (307)
187 cd05293 LDH_1 A subgroup of L- 98.5 6.4E-07 1.4E-11 89.8 10.7 96 148-256 4-115 (312)
188 cd05291 HicDH_like L-2-hydroxy 98.5 7.6E-07 1.6E-11 89.4 10.9 98 148-259 1-114 (306)
189 PRK08290 enoyl-CoA hydratase; 98.5 2.4E-07 5.1E-12 92.1 6.9 81 1-117 180-262 (288)
190 KOG1679 Enoyl-CoA hydratase [L 98.4 1.8E-07 3.9E-12 85.3 4.6 96 1-132 188-287 (291)
191 PLN02602 lactate dehydrogenase 98.4 1.1E-06 2.4E-11 89.3 9.5 99 148-261 38-155 (350)
192 PRK15076 alpha-galactosidase; 98.4 1.6E-06 3.6E-11 90.7 11.0 77 147-235 1-84 (431)
193 cd05292 LDH_2 A subgroup of L- 98.4 1.5E-06 3.4E-11 87.2 10.1 97 148-258 1-113 (308)
194 PRK06213 enoyl-CoA hydratase; 98.4 3.2E-07 7E-12 88.1 4.6 73 1-109 156-228 (229)
195 KOG1683 Hydroxyacyl-CoA dehydr 98.4 1.5E-07 3.3E-12 93.0 2.3 77 329-410 293-375 (380)
196 PRK08788 enoyl-CoA hydratase; 98.4 1.7E-06 3.6E-11 85.7 9.4 90 1-127 185-275 (287)
197 PRK13243 glyoxylate reductase; 98.3 2.9E-06 6.3E-11 86.0 11.1 102 148-275 151-255 (333)
198 PLN02157 3-hydroxyisobutyryl-C 98.3 8.7E-07 1.9E-11 91.4 6.8 88 1-126 196-283 (401)
199 PRK05708 2-dehydropantoate 2-r 98.3 9.1E-06 2E-10 81.6 13.7 172 148-335 3-184 (305)
200 PRK13403 ketol-acid reductoiso 98.3 2.4E-06 5.3E-11 84.6 9.1 145 148-322 17-174 (335)
201 KOG3124 Pyrroline-5-carboxylat 98.3 4.4E-06 9.5E-11 79.1 10.3 151 148-322 1-156 (267)
202 cd00300 LDH_like L-lactate deh 98.3 3.1E-06 6.7E-11 84.7 9.7 96 150-259 1-112 (300)
203 PRK00066 ldh L-lactate dehydro 98.3 5.1E-06 1.1E-10 83.5 10.8 96 148-258 7-118 (315)
204 PRK08272 enoyl-CoA hydratase; 98.3 1.5E-06 3.2E-11 87.1 6.7 42 1-42 188-229 (302)
205 cd01065 NAD_bind_Shikimate_DH 98.2 2.3E-06 5E-11 76.7 7.0 118 148-286 20-141 (155)
206 PRK07574 formate dehydrogenase 98.2 1.2E-05 2.7E-10 82.6 13.0 104 148-275 193-299 (385)
207 PF07991 IlvN: Acetohydroxy ac 98.2 3.1E-06 6.7E-11 75.3 7.3 87 148-260 5-93 (165)
208 PRK15469 ghrA bifunctional gly 98.2 9.1E-06 2E-10 81.6 11.3 102 148-275 137-241 (312)
209 PLN03139 formate dehydrogenase 98.2 1.8E-05 4E-10 81.3 13.7 130 148-301 200-341 (386)
210 COG0039 Mdh Malate/lactate deh 98.2 3.8E-06 8.2E-11 83.2 8.3 99 148-259 1-115 (313)
211 cd05290 LDH_3 A subgroup of L- 98.2 6.8E-06 1.5E-10 82.2 9.3 70 149-234 1-76 (307)
212 PRK06436 glycerate dehydrogena 98.2 1.7E-05 3.7E-10 79.2 11.6 134 148-310 123-267 (303)
213 PRK08605 D-lactate dehydrogena 98.2 4.2E-06 9.2E-11 84.8 7.3 101 148-275 147-251 (332)
214 KOG1681 Enoyl-CoA isomerase [L 98.1 4.9E-06 1.1E-10 76.8 6.3 98 1-134 191-289 (292)
215 PF02558 ApbA: Ketopantoate re 98.1 6.9E-06 1.5E-10 73.4 7.2 114 150-277 1-117 (151)
216 cd05294 LDH-like_MDH_nadp A la 98.1 9E-06 1.9E-10 81.6 8.5 123 148-283 1-145 (309)
217 TIGR01327 PGDH D-3-phosphoglyc 98.0 4.6E-05 1E-09 82.1 12.6 130 148-302 139-279 (525)
218 KOG2711 Glycerol-3-phosphate d 98.0 4.6E-05 9.9E-10 75.0 10.9 178 145-331 19-220 (372)
219 PLN00112 malate dehydrogenase 98.0 4.9E-05 1.1E-09 79.2 11.8 103 147-263 100-227 (444)
220 PRK05442 malate dehydrogenase; 98.0 1.7E-05 3.6E-10 80.1 8.0 104 147-265 4-133 (326)
221 PLN02928 oxidoreductase family 98.0 5.6E-05 1.2E-09 77.1 11.4 126 148-286 160-289 (347)
222 PRK05869 enoyl-CoA hydratase; 98.0 8.8E-06 1.9E-10 77.7 5.0 42 1-42 163-204 (222)
223 TIGR01759 MalateDH-SF1 malate 97.9 2.5E-05 5.5E-10 78.6 8.3 103 148-265 4-132 (323)
224 COG0111 SerA Phosphoglycerate 97.9 7.3E-05 1.6E-09 75.2 11.5 126 148-300 143-282 (324)
225 PRK13581 D-3-phosphoglycerate 97.9 6.9E-05 1.5E-09 80.8 12.0 129 148-302 141-280 (526)
226 cd01337 MDH_glyoxysomal_mitoch 97.9 3E-05 6.5E-10 77.5 8.5 97 148-263 1-118 (310)
227 PF02826 2-Hacid_dh_C: D-isome 97.9 1.3E-05 2.9E-10 73.8 5.2 104 148-276 37-143 (178)
228 cd01338 MDH_choloroplast_like 97.9 2.2E-05 4.7E-10 79.1 6.9 100 148-262 3-128 (322)
229 KOG0016 Enoyl-CoA hydratase/is 97.9 2.5E-05 5.4E-10 73.9 6.7 93 1-129 171-263 (266)
230 TIGR01757 Malate-DH_plant mala 97.9 0.00011 2.5E-09 75.3 11.7 102 148-263 45-171 (387)
231 KOG2380 Prephenate dehydrogena 97.9 0.00035 7.5E-09 68.7 14.2 153 147-326 52-219 (480)
232 TIGR01772 MDH_euk_gproteo mala 97.9 3.7E-05 8.1E-10 77.0 7.6 98 149-265 1-119 (312)
233 cd01487 E1_ThiF_like E1_ThiF_l 97.8 6.9E-05 1.5E-09 68.8 8.0 95 149-251 1-112 (174)
234 TIGR02853 spore_dpaA dipicolin 97.8 5.8E-05 1.2E-09 74.9 7.8 89 148-263 152-241 (287)
235 PF00670 AdoHcyase_NAD: S-aden 97.8 0.0001 2.2E-09 66.0 8.1 98 148-273 24-124 (162)
236 PLN02988 3-hydroxyisobutyryl-C 97.8 0.00012 2.7E-09 75.2 9.8 131 1-133 168-335 (381)
237 TIGR01771 L-LDH-NAD L-lactate 97.7 9.1E-05 2E-09 74.0 8.4 95 152-260 1-111 (299)
238 PLN00106 malate dehydrogenase 97.7 0.00012 2.5E-09 73.8 8.8 93 148-259 19-132 (323)
239 PRK13302 putative L-aspartate 97.7 0.00022 4.8E-09 70.2 10.5 70 147-238 6-79 (271)
240 PRK14194 bifunctional 5,10-met 97.7 6.1E-05 1.3E-09 74.4 6.3 71 148-262 160-231 (301)
241 KOG1495 Lactate dehydrogenase 97.7 0.00018 3.9E-09 68.6 8.9 107 146-266 19-141 (332)
242 PRK15409 bifunctional glyoxyla 97.7 0.00058 1.2E-08 69.0 12.9 102 148-275 146-251 (323)
243 PRK08410 2-hydroxyacid dehydro 97.7 0.00028 6.2E-09 70.9 10.4 109 148-286 146-258 (311)
244 PRK13304 L-aspartate dehydroge 97.6 0.00034 7.5E-09 68.7 10.6 88 147-260 1-92 (265)
245 KOG2653 6-phosphogluconate deh 97.6 0.0019 4.1E-08 63.9 15.3 196 146-365 5-227 (487)
246 PTZ00325 malate dehydrogenase; 97.6 0.00018 3.9E-09 72.3 8.7 35 145-179 6-43 (321)
247 cd00704 MDH Malate dehydrogena 97.6 5.7E-05 1.2E-09 76.2 5.1 98 149-262 2-126 (323)
248 PLN02267 enoyl-CoA hydratase/i 97.6 6.7E-05 1.5E-09 72.5 5.1 42 1-42 160-202 (239)
249 PRK11790 D-3-phosphoglycerate 97.6 0.00043 9.2E-09 72.2 11.4 100 148-275 152-254 (409)
250 PF01488 Shikimate_DH: Shikima 97.6 0.00015 3.2E-09 63.7 6.6 74 147-238 12-87 (135)
251 TIGR01758 MDH_euk_cyt malate d 97.6 0.00017 3.7E-09 72.8 7.9 100 149-263 1-126 (324)
252 PRK08644 thiamine biosynthesis 97.6 0.00018 3.9E-09 68.2 7.0 104 148-259 29-149 (212)
253 PRK08306 dipicolinate synthase 97.5 0.00032 7E-09 70.0 8.9 89 148-263 153-242 (296)
254 TIGR00745 apbA_panE 2-dehydrop 97.5 0.005 1.1E-07 61.1 17.3 154 158-327 2-167 (293)
255 PRK00257 erythronate-4-phospha 97.5 0.00011 2.4E-09 75.6 5.2 99 148-275 117-222 (381)
256 cd05197 GH4_glycoside_hydrolas 97.5 0.0012 2.6E-08 69.1 12.7 75 148-234 1-82 (425)
257 PRK06932 glycerate dehydrogena 97.5 0.00088 1.9E-08 67.4 11.1 98 148-275 148-248 (314)
258 PRK06487 glycerate dehydrogena 97.5 0.00079 1.7E-08 67.9 10.8 97 148-275 149-248 (317)
259 PRK06141 ornithine cyclodeamin 97.5 0.00037 8E-09 70.2 8.3 93 147-263 125-220 (314)
260 cd05298 GH4_GlvA_pagL_like Gly 97.5 0.0015 3.3E-08 68.4 12.9 75 148-234 1-82 (437)
261 PF02056 Glyco_hydro_4: Family 97.4 0.0017 3.6E-08 59.7 11.1 74 149-234 1-81 (183)
262 PRK05225 ketol-acid reductoiso 97.4 0.00052 1.1E-08 70.9 8.5 184 148-358 37-250 (487)
263 COG0569 TrkA K+ transport syst 97.4 0.0017 3.6E-08 62.2 11.4 93 148-261 1-100 (225)
264 PRK14188 bifunctional 5,10-met 97.4 0.00035 7.5E-09 69.2 6.9 70 148-262 159-230 (296)
265 cd01075 NAD_bind_Leu_Phe_Val_D 97.4 0.0017 3.8E-08 60.9 11.3 39 148-186 29-67 (200)
266 cd05296 GH4_P_beta_glucosidase 97.4 0.0011 2.5E-08 69.1 10.9 75 148-234 1-83 (419)
267 cd00401 AdoHcyase S-adenosyl-L 97.4 0.00084 1.8E-08 69.7 9.8 85 148-261 203-288 (413)
268 cd05213 NAD_bind_Glutamyl_tRNA 97.4 0.00046 1E-08 69.4 7.3 72 147-239 178-251 (311)
269 PRK15438 erythronate-4-phospha 97.3 0.00023 4.9E-09 73.1 4.8 99 148-275 117-222 (378)
270 TIGR00936 ahcY adenosylhomocys 97.3 0.0012 2.5E-08 68.4 9.9 98 148-274 196-297 (406)
271 COG1748 LYS9 Saccharopine dehy 97.3 0.00032 6.9E-09 71.7 5.8 80 147-240 1-82 (389)
272 PLN02306 hydroxypyruvate reduc 97.3 0.0022 4.7E-08 66.3 12.0 117 148-275 166-287 (386)
273 COG1052 LdhA Lactate dehydroge 97.3 0.00055 1.2E-08 68.9 7.1 102 148-275 147-251 (324)
274 PRK05476 S-adenosyl-L-homocyst 97.3 0.00095 2.1E-08 69.4 8.6 87 148-263 213-300 (425)
275 PRK05086 malate dehydrogenase; 97.3 0.0011 2.4E-08 66.6 8.9 94 148-259 1-115 (312)
276 PRK12549 shikimate 5-dehydroge 97.2 0.00088 1.9E-08 66.5 7.9 74 148-237 128-203 (284)
277 TIGR03222 benzo_boxC benzoyl-C 97.2 0.00022 4.8E-09 76.5 3.7 43 1-43 188-230 (546)
278 PLN02851 3-hydroxyisobutyryl-C 97.2 0.0016 3.4E-08 67.5 9.7 131 1-133 201-368 (407)
279 COG4091 Predicted homoserine d 97.2 0.0045 9.7E-08 61.4 12.2 162 148-327 18-185 (438)
280 cd01336 MDH_cytoplasmic_cytoso 97.2 0.00075 1.6E-08 68.2 6.9 101 148-263 3-129 (325)
281 TIGR02371 ala_DH_arch alanine 97.2 0.0014 3E-08 66.4 8.8 94 147-264 128-224 (325)
282 PF01113 DapB_N: Dihydrodipico 97.1 0.0022 4.7E-08 55.4 8.0 103 148-271 1-107 (124)
283 TIGR00507 aroE shikimate 5-deh 97.1 0.0014 3.1E-08 64.5 7.5 41 148-188 118-158 (270)
284 PRK08184 benzoyl-CoA-dihydrodi 97.1 0.00037 8E-09 75.1 3.5 43 1-43 192-234 (550)
285 PRK04148 hypothetical protein; 97.1 0.0039 8.4E-08 54.2 9.1 94 148-262 18-111 (134)
286 PRK07340 ornithine cyclodeamin 97.1 0.0019 4.1E-08 64.7 8.1 91 148-264 126-219 (304)
287 PRK14179 bifunctional 5,10-met 97.0 0.0011 2.4E-08 65.1 6.1 70 148-262 159-230 (284)
288 PRK08618 ornithine cyclodeamin 97.0 0.0024 5.2E-08 64.7 8.6 93 148-264 128-223 (325)
289 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0026 5.7E-08 57.9 7.9 76 148-267 45-121 (168)
290 TIGR01470 cysG_Nterm siroheme 97.0 0.0054 1.2E-07 57.8 10.2 131 148-318 10-143 (205)
291 PTZ00075 Adenosylhomocysteinas 97.0 0.0019 4.2E-08 67.6 7.4 88 148-266 255-344 (476)
292 COG0059 IlvC Ketol-acid reduct 97.0 0.011 2.3E-07 57.9 11.8 145 148-321 19-176 (338)
293 TIGR02992 ectoine_eutC ectoine 97.0 0.003 6.5E-08 64.0 8.7 74 148-238 130-206 (326)
294 PLN02494 adenosylhomocysteinas 96.9 0.005 1.1E-07 64.5 10.1 97 148-273 255-355 (477)
295 PRK13301 putative L-aspartate 96.9 0.0052 1.1E-07 59.6 9.4 65 147-236 2-72 (267)
296 smart00859 Semialdhyde_dh Semi 96.9 0.0036 7.7E-08 53.7 7.5 99 149-267 1-104 (122)
297 cd01078 NAD_bind_H4MPT_DH NADP 96.9 0.0013 2.7E-08 61.5 5.0 41 148-188 29-70 (194)
298 COG1712 Predicted dinucleotide 96.9 0.0062 1.3E-07 57.0 9.2 92 148-266 1-96 (255)
299 KOG2666 UDP-glucose/GDP-mannos 96.9 0.02 4.3E-07 56.0 12.9 127 147-285 1-150 (481)
300 PRK06718 precorrin-2 dehydroge 96.8 0.019 4.2E-07 53.9 12.4 129 148-317 11-142 (202)
301 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0012 2.7E-08 69.1 4.7 38 148-185 181-219 (417)
302 COG2910 Putative NADH-flavin r 96.8 0.0021 4.6E-08 58.2 5.5 38 148-185 1-39 (211)
303 PRK11861 bifunctional prephena 96.8 0.0081 1.7E-07 67.0 11.3 95 230-326 1-110 (673)
304 PRK00258 aroE shikimate 5-dehy 96.8 0.0043 9.3E-08 61.4 8.1 72 148-238 124-197 (278)
305 PRK08291 ectoine utilization p 96.8 0.0049 1.1E-07 62.6 8.6 74 148-238 133-209 (330)
306 PRK09310 aroDE bifunctional 3- 96.8 0.0032 6.9E-08 67.1 7.5 70 148-238 333-402 (477)
307 TIGR03200 dearomat_oah 6-oxocy 96.8 0.0047 1E-07 62.5 8.1 42 1-42 188-241 (360)
308 PRK00045 hemA glutamyl-tRNA re 96.8 0.0027 5.8E-08 66.7 6.6 69 148-237 183-253 (423)
309 PRK00048 dihydrodipicolinate r 96.7 0.0029 6.4E-08 61.8 6.4 94 148-270 2-99 (257)
310 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.025 5.5E-07 47.9 11.4 68 148-238 1-74 (120)
311 TIGR02356 adenyl_thiF thiazole 96.7 0.0041 8.8E-08 58.5 6.8 33 148-180 22-55 (202)
312 TIGR01809 Shik-DH-AROM shikima 96.7 0.0056 1.2E-07 60.7 8.0 41 148-188 126-167 (282)
313 COG1064 AdhP Zn-dependent alco 96.7 0.1 2.2E-06 52.6 16.8 40 148-187 168-207 (339)
314 TIGR00518 alaDH alanine dehydr 96.7 0.0037 8E-08 64.4 6.7 40 147-186 167-206 (370)
315 KOG0069 Glyoxylate/hydroxypyru 96.6 0.0062 1.4E-07 61.0 7.9 104 147-274 162-267 (336)
316 PLN00203 glutamyl-tRNA reducta 96.6 0.0031 6.6E-08 67.6 6.1 84 147-248 266-352 (519)
317 PLN02819 lysine-ketoglutarate 96.6 0.023 5E-07 65.4 13.4 77 144-239 566-661 (1042)
318 PRK12475 thiamine/molybdopteri 96.6 0.0067 1.5E-07 61.7 8.2 33 148-180 25-58 (338)
319 PRK13303 L-aspartate dehydroge 96.6 0.0027 5.8E-08 62.4 5.1 69 147-237 1-72 (265)
320 PF03059 NAS: Nicotianamine sy 96.6 0.006 1.3E-07 59.8 7.4 100 147-261 121-229 (276)
321 PF01118 Semialdhyde_dh: Semia 96.6 0.0034 7.4E-08 53.8 5.1 98 149-267 1-102 (121)
322 PRK06046 alanine dehydrogenase 96.6 0.0078 1.7E-07 61.0 8.4 93 147-263 129-224 (326)
323 TIGR01921 DAP-DH diaminopimela 96.5 0.025 5.4E-07 56.7 11.5 33 148-180 4-38 (324)
324 PF02254 TrkA_N: TrkA-N domain 96.5 0.013 2.7E-07 49.6 8.0 90 150-261 1-96 (116)
325 COG2423 Predicted ornithine cy 96.5 0.013 2.8E-07 59.0 9.2 92 147-261 130-224 (330)
326 PRK06407 ornithine cyclodeamin 96.4 0.014 3.1E-07 58.3 8.8 94 147-263 117-213 (301)
327 PF13460 NAD_binding_10: NADH( 96.4 0.014 3E-07 53.4 8.0 91 150-263 1-100 (183)
328 COG0169 AroE Shikimate 5-dehyd 96.4 0.0099 2.1E-07 58.6 7.2 75 148-238 127-202 (283)
329 PRK00683 murD UDP-N-acetylmura 96.3 0.043 9.2E-07 57.6 12.3 37 147-183 3-39 (418)
330 PRK10669 putative cation:proto 96.3 0.013 2.8E-07 64.0 8.6 95 148-260 418-514 (558)
331 PRK03659 glutathione-regulated 96.3 0.014 3.1E-07 64.1 8.9 99 148-264 401-501 (601)
332 PRK00961 H(2)-dependent methyl 96.3 0.025 5.4E-07 54.4 9.2 107 218-326 133-242 (342)
333 COG1486 CelF Alpha-galactosida 96.3 0.049 1.1E-06 56.5 12.0 76 147-234 3-85 (442)
334 PRK06823 ornithine cyclodeamin 96.3 0.021 4.6E-07 57.4 9.2 94 147-264 128-224 (315)
335 PRK13940 glutamyl-tRNA reducta 96.2 0.0063 1.4E-07 63.5 5.5 69 148-236 182-252 (414)
336 PRK09496 trkA potassium transp 96.2 0.015 3.3E-07 61.5 8.5 39 148-186 1-39 (453)
337 cd01483 E1_enzyme_family Super 96.2 0.013 2.8E-07 51.8 6.5 32 149-180 1-33 (143)
338 PRK06719 precorrin-2 dehydroge 96.2 0.055 1.2E-06 48.7 10.7 124 148-317 14-142 (157)
339 COG0373 HemA Glutamyl-tRNA red 96.2 0.0071 1.5E-07 62.4 5.5 41 148-188 179-220 (414)
340 PRK07688 thiamine/molybdopteri 96.1 0.017 3.7E-07 58.7 7.7 33 148-180 25-58 (339)
341 cd05191 NAD_bind_amino_acid_DH 96.1 0.026 5.6E-07 45.2 7.2 31 148-178 24-55 (86)
342 PRK06153 hypothetical protein; 96.1 0.015 3.3E-07 59.4 7.1 32 148-179 177-209 (393)
343 TIGR00036 dapB dihydrodipicoli 96.1 0.021 4.4E-07 56.2 8.0 32 148-179 2-36 (266)
344 PRK14175 bifunctional 5,10-met 96.1 0.02 4.4E-07 56.4 7.8 72 148-263 159-231 (286)
345 COG0686 Ald Alanine dehydrogen 96.1 0.021 4.5E-07 56.1 7.6 92 148-261 169-267 (371)
346 PF02423 OCD_Mu_crystall: Orni 96.0 0.013 2.9E-07 58.9 6.6 93 148-264 129-226 (313)
347 TIGR01723 hmd_TIGR 5,10-methen 96.0 0.049 1.1E-06 52.6 9.6 104 218-326 131-240 (340)
348 PRK05562 precorrin-2 dehydroge 95.9 0.064 1.4E-06 51.0 10.2 129 148-317 26-158 (223)
349 PF03435 Saccharop_dh: Sacchar 95.9 0.0094 2E-07 61.8 5.1 38 150-187 1-40 (386)
350 cd05311 NAD_bind_2_malic_enz N 95.9 0.016 3.4E-07 55.5 6.2 32 148-179 26-60 (226)
351 PRK03562 glutathione-regulated 95.9 0.031 6.8E-07 61.6 9.2 96 147-260 400-497 (621)
352 PRK12409 D-amino acid dehydrog 95.9 0.0085 1.8E-07 62.6 4.6 34 147-180 1-34 (410)
353 PRK06270 homoserine dehydrogen 95.9 0.11 2.4E-06 52.9 12.6 22 148-169 3-24 (341)
354 PF00070 Pyr_redox: Pyridine n 95.9 0.016 3.5E-07 45.6 5.0 35 149-183 1-35 (80)
355 PRK07589 ornithine cyclodeamin 95.9 0.049 1.1E-06 55.4 9.7 93 147-264 129-227 (346)
356 PRK14027 quinate/shikimate deh 95.8 0.016 3.5E-07 57.4 5.9 42 148-189 128-170 (283)
357 PRK09424 pntA NAD(P) transhydr 95.8 0.062 1.3E-06 57.4 10.3 41 147-187 165-205 (509)
358 PRK14192 bifunctional 5,10-met 95.7 0.032 7E-07 55.2 7.6 70 148-261 160-230 (283)
359 PRK00141 murD UDP-N-acetylmura 95.7 0.13 2.9E-06 54.8 12.6 38 145-182 13-50 (473)
360 PF13380 CoA_binding_2: CoA bi 95.7 0.055 1.2E-06 46.0 7.8 83 148-261 1-88 (116)
361 PRK09496 trkA potassium transp 95.6 0.13 2.9E-06 54.3 12.4 41 147-187 231-271 (453)
362 PRK02318 mannitol-1-phosphate 95.6 0.037 8.1E-07 57.3 7.9 39 148-186 1-40 (381)
363 TIGR02355 moeB molybdopterin s 95.6 0.035 7.5E-07 53.7 7.1 34 148-181 25-59 (240)
364 PRK04207 glyceraldehyde-3-phos 95.6 0.059 1.3E-06 54.9 9.1 107 147-264 1-111 (341)
365 PRK08223 hypothetical protein; 95.5 0.037 8.1E-07 54.5 7.2 33 148-180 28-61 (287)
366 PRK05600 thiamine biosynthesis 95.5 0.038 8.3E-07 56.9 7.5 33 148-180 42-75 (370)
367 PRK12749 quinate/shikimate deh 95.5 0.045 9.7E-07 54.4 7.7 34 148-181 125-159 (288)
368 cd01484 E1-2_like Ubiquitin ac 95.5 0.063 1.4E-06 51.6 8.4 32 149-180 1-33 (234)
369 TIGR00561 pntA NAD(P) transhyd 95.5 0.091 2E-06 56.1 10.4 41 147-187 164-204 (511)
370 PRK14106 murD UDP-N-acetylmura 95.4 0.23 5E-06 52.6 13.5 33 148-180 6-38 (450)
371 cd00757 ThiF_MoeB_HesA_family 95.4 0.039 8.4E-07 52.9 6.8 33 148-180 22-55 (228)
372 PRK06199 ornithine cyclodeamin 95.4 0.046 1E-06 56.5 7.8 75 147-236 155-233 (379)
373 PRK03369 murD UDP-N-acetylmura 95.4 0.19 4.1E-06 53.9 12.6 35 148-182 13-47 (488)
374 PRK00436 argC N-acetyl-gamma-g 95.4 0.043 9.2E-07 56.0 7.2 100 147-268 2-105 (343)
375 PRK12550 shikimate 5-dehydroge 95.3 0.058 1.2E-06 53.1 7.7 39 148-186 123-162 (272)
376 PRK05597 molybdopterin biosynt 95.3 0.02 4.3E-07 58.7 4.7 33 148-180 29-62 (355)
377 PRK12548 shikimate 5-dehydroge 95.3 0.03 6.6E-07 55.7 5.7 34 148-181 127-161 (289)
378 COG1648 CysG Siroheme synthase 95.2 0.52 1.1E-05 44.5 13.6 130 148-317 13-145 (210)
379 PRK08762 molybdopterin biosynt 95.2 0.04 8.7E-07 57.0 6.7 32 148-179 136-168 (376)
380 PRK07877 hypothetical protein; 95.2 0.031 6.7E-07 62.1 5.9 32 148-180 108-141 (722)
381 cd00755 YgdL_like Family of ac 95.1 0.065 1.4E-06 51.4 7.2 33 148-180 12-45 (231)
382 CHL00194 ycf39 Ycf39; Provisio 95.1 0.06 1.3E-06 54.2 7.3 36 148-183 1-37 (317)
383 PRK00711 D-amino acid dehydrog 95.1 0.024 5.2E-07 59.2 4.5 34 148-181 1-34 (416)
384 TIGR03736 PRTRC_ThiF PRTRC sys 95.0 0.048 1.1E-06 52.6 6.1 33 148-180 12-55 (244)
385 PRK05690 molybdopterin biosynt 95.0 0.058 1.3E-06 52.3 6.7 33 148-180 33-66 (245)
386 PF13241 NAD_binding_7: Putati 95.0 0.081 1.8E-06 43.9 6.7 74 148-249 8-82 (103)
387 PRK01438 murD UDP-N-acetylmura 95.0 0.11 2.5E-06 55.4 9.5 36 146-181 15-50 (480)
388 PRK06349 homoserine dehydrogen 95.0 0.094 2E-06 55.2 8.6 35 148-182 4-49 (426)
389 KOG2018 Predicted dinucleotide 95.0 0.087 1.9E-06 51.6 7.5 110 123-247 61-185 (430)
390 PRK14189 bifunctional 5,10-met 94.8 0.067 1.4E-06 52.7 6.5 70 148-262 159-230 (285)
391 PRK15116 sulfur acceptor prote 94.8 0.045 9.8E-07 53.6 5.3 33 148-180 31-64 (268)
392 PRK05868 hypothetical protein; 94.7 0.029 6.3E-07 57.9 3.8 35 147-181 1-35 (372)
393 PLN00016 RNA-binding protein; 94.7 0.077 1.7E-06 54.8 6.9 37 146-182 51-92 (378)
394 PRK08300 acetaldehyde dehydrog 94.6 0.16 3.6E-06 50.4 8.8 97 148-265 5-104 (302)
395 cd01486 Apg7 Apg7 is an E1-lik 94.6 0.015 3.3E-07 57.4 1.4 32 149-180 1-33 (307)
396 PF01266 DAO: FAD dependent ox 94.6 0.042 9.2E-07 55.4 4.7 31 149-179 1-31 (358)
397 COG0673 MviM Predicted dehydro 94.5 0.23 4.9E-06 50.3 10.0 73 146-240 2-81 (342)
398 cd01076 NAD_bind_1_Glu_DH NAD( 94.5 0.11 2.4E-06 49.7 7.2 31 148-178 32-63 (227)
399 COG1063 Tdh Threonine dehydrog 94.5 0.094 2E-06 53.7 7.1 40 149-188 171-211 (350)
400 COG1179 Dinucleotide-utilizing 94.5 0.21 4.5E-06 47.6 8.5 34 148-181 31-65 (263)
401 PF01494 FAD_binding_3: FAD bi 94.4 0.038 8.3E-07 55.7 4.0 34 148-181 2-35 (356)
402 PF02882 THF_DHG_CYH_C: Tetrah 94.4 0.082 1.8E-06 47.6 5.6 74 148-265 37-111 (160)
403 PRK14191 bifunctional 5,10-met 94.4 0.12 2.6E-06 50.9 7.2 70 148-261 158-228 (285)
404 PLN03075 nicotianamine synthas 94.4 0.16 3.6E-06 50.3 8.1 101 147-262 124-233 (296)
405 PF13450 NAD_binding_8: NAD(P) 94.4 0.057 1.2E-06 41.2 3.9 30 152-181 1-30 (68)
406 PRK12828 short chain dehydroge 94.3 0.065 1.4E-06 50.9 5.2 39 148-186 8-47 (239)
407 cd05295 MDH_like Malate dehydr 94.3 0.31 6.8E-06 51.2 10.4 99 148-260 124-248 (452)
408 PRK07411 hypothetical protein; 94.3 0.097 2.1E-06 54.4 6.7 33 148-180 39-72 (390)
409 PRK08163 salicylate hydroxylas 94.3 0.046 9.9E-07 56.7 4.3 34 148-181 5-38 (396)
410 COG0300 DltE Short-chain dehyd 94.3 0.13 2.8E-06 50.2 7.0 47 146-192 5-52 (265)
411 PF00899 ThiF: ThiF family; I 94.3 0.052 1.1E-06 47.4 4.0 33 148-180 3-36 (135)
412 PRK11259 solA N-methyltryptoph 94.2 0.045 9.8E-07 56.2 4.1 33 148-180 4-36 (376)
413 PRK02472 murD UDP-N-acetylmura 94.2 0.52 1.1E-05 49.8 12.2 34 148-181 6-39 (447)
414 cd05212 NAD_bind_m-THF_DH_Cycl 94.2 0.15 3.3E-06 44.8 6.7 72 148-263 29-101 (140)
415 PRK06753 hypothetical protein; 94.2 0.046 1E-06 56.1 4.1 34 148-181 1-34 (373)
416 PLN02968 Probable N-acetyl-gam 94.2 0.11 2.5E-06 53.6 6.8 101 146-267 37-139 (381)
417 KOG0023 Alcohol dehydrogenase, 94.2 3.1 6.6E-05 41.5 16.1 39 148-187 183-222 (360)
418 PRK07236 hypothetical protein; 94.2 0.05 1.1E-06 56.3 4.3 36 146-181 5-40 (386)
419 COG0665 DadA Glycine/D-amino a 94.1 0.054 1.2E-06 55.8 4.5 35 147-181 4-38 (387)
420 cd05211 NAD_bind_Glu_Leu_Phe_V 94.1 0.16 3.4E-06 48.3 7.1 33 148-180 24-57 (217)
421 smart00846 Gp_dh_N Glyceraldeh 94.1 0.34 7.3E-06 43.2 8.8 38 148-185 1-41 (149)
422 TIGR01377 soxA_mon sarcosine o 94.0 0.052 1.1E-06 55.8 4.1 32 149-180 2-33 (380)
423 cd01490 Ube1_repeat2 Ubiquitin 94.0 0.21 4.6E-06 52.3 8.4 32 149-180 1-38 (435)
424 PRK06847 hypothetical protein; 94.0 0.055 1.2E-06 55.6 4.2 35 147-181 4-38 (375)
425 TIGR01850 argC N-acetyl-gamma- 94.0 0.13 2.7E-06 52.7 6.6 100 148-268 1-105 (346)
426 COG0771 MurD UDP-N-acetylmuram 94.0 0.35 7.5E-06 50.8 9.9 36 147-182 7-42 (448)
427 PRK14852 hypothetical protein; 94.0 0.066 1.4E-06 60.9 4.9 33 148-180 333-366 (989)
428 KOG0022 Alcohol dehydrogenase, 94.0 1.4 2.9E-05 43.8 13.2 40 148-187 194-234 (375)
429 PRK11728 hydroxyglutarate oxid 93.9 0.057 1.2E-06 56.1 4.2 33 148-180 3-37 (393)
430 COG0136 Asd Aspartate-semialde 93.9 0.48 1E-05 47.5 10.3 147 148-325 2-156 (334)
431 PRK12829 short chain dehydroge 93.9 0.22 4.8E-06 48.1 7.9 39 148-186 12-51 (264)
432 TIGR01381 E1_like_apg7 E1-like 93.9 0.042 9.1E-07 59.6 3.0 33 148-180 339-372 (664)
433 PRK01747 mnmC bifunctional tRN 93.9 0.054 1.2E-06 60.4 4.0 33 148-180 261-293 (662)
434 PRK07878 molybdopterin biosynt 93.8 0.066 1.4E-06 55.7 4.3 33 148-180 43-76 (392)
435 PRK08374 homoserine dehydrogen 93.8 0.39 8.4E-06 48.9 9.7 21 148-168 3-23 (336)
436 PRK10637 cysG siroheme synthas 93.7 0.4 8.8E-06 50.9 10.2 130 148-318 13-146 (457)
437 PRK07494 2-octaprenyl-6-methox 93.7 0.063 1.4E-06 55.5 4.0 34 148-181 8-41 (388)
438 cd00762 NAD_bind_malic_enz NAD 93.7 0.55 1.2E-05 45.4 10.0 126 148-291 26-175 (254)
439 PRK05335 tRNA (uracil-5-)-meth 93.6 0.07 1.5E-06 55.6 4.1 35 147-181 2-36 (436)
440 PRK07588 hypothetical protein; 93.6 0.065 1.4E-06 55.5 3.9 34 148-181 1-34 (391)
441 TIGR03215 ac_ald_DH_ac acetald 93.6 0.31 6.7E-06 48.2 8.4 90 148-263 2-96 (285)
442 PRK08773 2-octaprenyl-3-methyl 93.6 0.069 1.5E-06 55.4 4.0 34 147-180 6-39 (392)
443 PRK14874 aspartate-semialdehyd 93.5 0.089 1.9E-06 53.5 4.6 143 148-325 2-152 (334)
444 PRK07538 hypothetical protein; 93.5 0.07 1.5E-06 55.8 3.9 34 148-181 1-34 (413)
445 COG0499 SAM1 S-adenosylhomocys 93.5 0.22 4.7E-06 50.0 7.0 87 148-263 210-296 (420)
446 PRK14178 bifunctional 5,10-met 93.5 0.22 4.9E-06 48.9 7.1 71 148-262 153-224 (279)
447 TIGR03364 HpnW_proposed FAD de 93.4 0.079 1.7E-06 54.3 4.2 32 149-180 2-33 (365)
448 PRK14851 hypothetical protein; 93.4 0.14 3E-06 56.9 6.1 33 148-180 44-77 (679)
449 KOG1200 Mitochondrial/plastidi 93.4 0.93 2E-05 41.9 10.2 41 147-187 13-55 (256)
450 TIGR00137 gid_trmFO tRNA:m(5)U 93.3 0.08 1.7E-06 55.4 3.9 33 149-181 2-34 (433)
451 PRK05732 2-octaprenyl-6-methox 93.3 0.084 1.8E-06 54.6 4.1 33 147-179 3-38 (395)
452 PRK14982 acyl-ACP reductase; P 93.3 0.15 3.3E-06 51.6 5.7 39 148-186 156-197 (340)
453 PRK06475 salicylate hydroxylas 93.2 0.076 1.7E-06 55.3 3.6 34 148-181 3-36 (400)
454 PRK07045 putative monooxygenas 93.2 0.1 2.2E-06 54.0 4.5 36 147-182 5-40 (388)
455 TIGR02360 pbenz_hydroxyl 4-hyd 93.2 0.093 2E-06 54.5 4.2 34 148-181 3-36 (390)
456 PRK10792 bifunctional 5,10-met 93.2 0.23 5E-06 49.0 6.7 70 148-261 160-230 (285)
457 COG0654 UbiH 2-polyprenyl-6-me 93.1 0.091 2E-06 54.5 4.1 34 147-180 2-35 (387)
458 PRK08013 oxidoreductase; Provi 93.1 0.078 1.7E-06 55.2 3.6 34 148-181 4-37 (400)
459 cd05312 NAD_bind_1_malic_enz N 93.0 0.47 1E-05 46.6 8.6 124 148-290 26-173 (279)
460 PRK06617 2-octaprenyl-6-methox 93.0 0.097 2.1E-06 54.0 4.1 33 147-179 1-33 (374)
461 PRK07102 short chain dehydroge 93.0 0.24 5.2E-06 47.4 6.6 41 147-187 1-42 (243)
462 PRK08340 glucose-1-dehydrogena 93.0 0.23 4.9E-06 48.2 6.4 42 148-189 1-43 (259)
463 cd01491 Ube1_repeat1 Ubiquitin 92.9 0.79 1.7E-05 45.4 10.1 33 148-180 20-53 (286)
464 PRK01710 murD UDP-N-acetylmura 92.9 1.1 2.5E-05 47.5 12.0 34 148-181 15-48 (458)
465 TIGR01988 Ubi-OHases Ubiquinon 92.8 0.092 2E-06 54.0 3.6 32 150-181 2-33 (385)
466 PRK14176 bifunctional 5,10-met 92.8 0.26 5.7E-06 48.6 6.5 72 148-263 165-237 (287)
467 PRK06940 short chain dehydroge 92.8 0.23 4.9E-06 48.8 6.1 39 150-189 5-43 (275)
468 PRK07364 2-octaprenyl-6-methox 92.7 0.092 2E-06 54.8 3.4 34 148-181 19-52 (415)
469 PRK08849 2-octaprenyl-3-methyl 92.7 0.11 2.4E-06 53.7 4.0 33 148-180 4-36 (384)
470 TIGR01984 UbiH 2-polyprenyl-6- 92.6 0.099 2.1E-06 53.8 3.5 32 150-181 2-34 (382)
471 PRK06196 oxidoreductase; Provi 92.6 0.25 5.5E-06 49.5 6.4 41 148-188 27-68 (315)
472 PRK05714 2-octaprenyl-3-methyl 92.6 0.099 2.1E-06 54.5 3.5 32 149-180 4-35 (405)
473 PRK11101 glpA sn-glycerol-3-ph 92.6 0.12 2.7E-06 56.2 4.3 33 148-180 7-39 (546)
474 COG2344 AT-rich DNA-binding pr 92.6 0.35 7.6E-06 44.2 6.4 39 145-183 82-123 (211)
475 PRK07231 fabG 3-ketoacyl-(acyl 92.6 0.28 6E-06 47.0 6.4 40 148-187 6-46 (251)
476 TIGR03466 HpnA hopanoid-associ 92.6 0.16 3.5E-06 50.8 4.9 35 148-182 1-36 (328)
477 PRK05653 fabG 3-ketoacyl-(acyl 92.5 0.32 7E-06 46.2 6.7 40 147-186 5-45 (246)
478 cd01079 NAD_bind_m-THF_DH NAD 92.5 0.46 9.9E-06 44.0 7.3 88 148-265 63-159 (197)
479 COG1062 AdhC Zn-dependent alco 92.5 3.4 7.4E-05 41.6 13.7 40 148-187 187-227 (366)
480 PRK04308 murD UDP-N-acetylmura 92.5 0.78 1.7E-05 48.5 10.2 35 147-181 5-39 (445)
481 PF12847 Methyltransf_18: Meth 92.5 0.94 2E-05 37.4 8.8 95 148-260 3-109 (112)
482 PRK08664 aspartate-semialdehyd 92.5 0.3 6.5E-06 50.0 6.7 107 147-267 3-112 (349)
483 PRK08267 short chain dehydroge 92.5 0.27 5.9E-06 47.5 6.2 40 147-186 1-41 (260)
484 PRK07062 short chain dehydroge 92.4 0.22 4.8E-06 48.3 5.5 41 148-188 9-50 (265)
485 COG1206 Gid NAD(FAD)-utilizing 92.4 0.59 1.3E-05 46.6 8.1 35 148-182 4-38 (439)
486 PRK06185 hypothetical protein; 92.3 0.14 3.1E-06 53.3 4.1 34 148-181 7-40 (407)
487 TIGR01373 soxB sarcosine oxida 92.3 0.14 3E-06 53.4 4.1 33 148-180 31-65 (407)
488 PF01262 AlaDh_PNT_C: Alanine 92.3 0.34 7.3E-06 44.0 6.1 40 147-186 20-59 (168)
489 PRK00421 murC UDP-N-acetylmura 92.3 0.3 6.5E-06 51.9 6.7 35 147-181 7-42 (461)
490 PRK07326 short chain dehydroge 92.2 0.33 7.1E-06 46.1 6.3 40 148-187 7-47 (237)
491 PLN00093 geranylgeranyl diphos 92.2 0.19 4.1E-06 53.3 5.1 38 144-181 36-73 (450)
492 PRK08020 ubiF 2-octaprenyl-3-m 92.2 0.14 3E-06 53.0 4.0 33 148-180 6-38 (391)
493 TIGR01202 bchC 2-desacetyl-2-h 92.2 0.66 1.4E-05 46.4 8.8 38 148-185 146-184 (308)
494 PLN02985 squalene monooxygenas 92.2 0.19 4.1E-06 54.3 5.1 34 147-180 43-76 (514)
495 KOG0068 D-3-phosphoglycerate d 92.1 0.36 7.8E-06 48.1 6.4 100 148-274 147-250 (406)
496 PF10100 DUF2338: Uncharacteri 92.1 3.7 8E-05 42.2 13.6 176 147-326 1-200 (429)
497 PRK11579 putative oxidoreducta 92.1 0.5 1.1E-05 48.2 7.8 68 148-240 5-78 (346)
498 TIGR01408 Ube1 ubiquitin-activ 92.1 0.49 1.1E-05 54.9 8.4 162 148-318 420-606 (1008)
499 PF00743 FMO-like: Flavin-bind 92.1 0.13 2.9E-06 55.6 3.7 34 148-181 2-35 (531)
500 TIGR03219 salicylate_mono sali 92.0 0.15 3.2E-06 53.4 3.9 34 148-181 1-35 (414)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=4.1e-86 Score=725.20 Aligned_cols=478 Identities=30% Similarity=0.462 Sum_probs=417.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-------------chHHHHHHHHHHhhhccCCCcchhhcccCCCC-----CchhH
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIE-----PLGEA 62 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~-------------~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~-----~~~~~ 62 (496)
|+|||++++|+||+++||||+|||+ +++.+.|.+++++++..+.+..+.....+++. .+...
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5899999999999999999999987 55888899999887654211111110011110 11123
Q ss_pred HHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 010966 63 REIFKFARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (496)
Q Consensus 63 ~~~~~~~~~~~~~~~~-~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~ 141 (496)
...+..+++++.++.+ |||||.+++++++.+...+++++++.|++.|.+|+.|++++++++.||.+|..++.+..
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~---- 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG---- 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence 4466788999999987 59999999999999999999999999999999999999999999999999999886531
Q ss_pred CCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 142 ~~~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
..+++|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 13468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCC
Q 010966 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (496)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (496)
+++++||+|||||||++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|++|||++++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchh
Q 010966 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~ 381 (496)
.|++++++.+.++++.+||.|++++|+|||++||++.++++||++++++|+++++||+++++||||||||+++|.+|||+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHhhhhhhhhCCCCcc--ccchHHHHHhcCCCccccCceeeeecCCC--CCCCChHHHHH-------------------
Q 010966 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKF------------------- 438 (496)
Q Consensus 382 ~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~lG~k~g~GFY~y~~~~--~~~~~~~~~~~------------------- 438 (496)
++++++.+...+++++. |++++++|+++|++|+|||+|||+|++++ +...++.+..+
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~p~~~~~~~g~I~ 649 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQ 649 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccCcccccCChHHHH
Confidence 99999999998887653 57899999999999999999999998653 34444443333
Q ss_pred -------HHHHHHh--cCCccChhhhh---HhhcccccccccCCCcceeccccccc
Q 010966 439 -------IEKARSM--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKF 482 (496)
Q Consensus 439 -------~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~ 482 (496)
+++...+ ++++.+++.+| +++.||++++-.--....-+|=+...
T Consensus 650 ~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~ 705 (737)
T TIGR02441 650 IRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV 705 (737)
T ss_pred HHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence 3333343 68888999998 89999998776555544444544433
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=3.2e-84 Score=709.02 Aligned_cols=473 Identities=30% Similarity=0.522 Sum_probs=409.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCC----CchhHHHHHHHHHHHHHhh
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----PLGEAREIFKFARAQARKQ 76 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (496)
|+|||++++|++|+++||||+|+|+++++++|.++++++.....++.+.. .+... +.......+..+++++.++
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAKGMVAQV 243 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999988665321211111 01111 1111112244566655555
Q ss_pred -CCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeC
Q 010966 77 -APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (496)
Q Consensus 77 -~~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGa 155 (496)
.++||||..++++++.+...+++++++.|++.|.+|+.||++++++++||.+|+.++.++. .+..++++++|+|||+
T Consensus 244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa 321 (714)
T TIGR02437 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA 321 (714)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence 4599999999999999999999999999999999999999999999999999999887532 1234678999999999
Q ss_pred ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEecc
Q 010966 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (496)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~ 235 (496)
|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++++.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (714)
T TIGR02437 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401 (714)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 010966 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (496)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~ 315 (496)
|++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.||+|||++++.|++++++.+.+++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~ 481 (714)
T TIGR02437 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA 481 (714)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCC
Q 010966 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (496)
Q Consensus 316 ~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~ 394 (496)
+.+||+|++++|+|||++||++.++++||.+++++|+++++||++|+ +||||||||+++|.+|||+++++++.+...++
T Consensus 482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~ 561 (714)
T TIGR02437 482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP 561 (714)
T ss_pred HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999998888
Q ss_pred CCc--cccchHHHHHhcCCCccccCceeeeecCC---C-CCCCChHHHHHH------------------------HHHHH
Q 010966 395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDER---R-KASPDPEVKKFI------------------------EKARS 444 (496)
Q Consensus 395 ~~~--~~~~~l~~~~~~G~lG~k~g~GFY~y~~~---~-~~~~~~~~~~~~------------------------~~~~~ 444 (496)
+++ .+++++++|+++|++|+|||+|||+|+++ + +..+++++..++ ++...
T Consensus 562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~~nEa~~ 641 (714)
T TIGR02437 562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVYEQRDFDDEEIIARMMIPMINETVR 641 (714)
T ss_pred cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 764 24579999999999999999999999643 2 334555543333 23333
Q ss_pred h--cCCccChhhhh---HhhcccccccccCCCcceecc
Q 010966 445 M--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLG 477 (496)
Q Consensus 445 ~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g 477 (496)
+ ++++.+++.+| +++.||+++.-.-...+.-+|
T Consensus 642 ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~G 679 (714)
T TIGR02437 642 CLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIG 679 (714)
T ss_pred HHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence 3 57889999998 899999986654444333344
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=5.6e-83 Score=699.35 Aligned_cols=475 Identities=34% Similarity=0.538 Sum_probs=412.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCC--CCchhHHHHHHHHHHHHHhhCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP 78 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (496)
|+|||++++|++|+++||||+|+|+++++++|.++|++......|. .....+ .++...+..+..+++++.++.+
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL----SLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc----cchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999997510000010 000011 1111223345567777877765
Q ss_pred -CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCCh
Q 010966 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (496)
Q Consensus 79 -~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~ 157 (496)
+||||.++|++++.+...+++++++.|++.|..++.|+++++++++|+.+++.++.++. . ...++++||+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence 89999999999999999999999999999999999999999999999999999887553 2 2346789999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccC
Q 010966 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (496)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (496)
||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 010966 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (496)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (496)
++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC
Q 010966 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (496)
Q Consensus 317 ~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~ 396 (496)
.+||.|++++|.|||++||++.++++||++++++|+++++||.+|+++|||||||+++|.+|+|+++++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccchHHHHHhcCCCccccCceeeeecCC-CCCCCChHH----------------------HHHHHHHHHh--cCCccC
Q 010966 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEV----------------------KKFIEKARSM--SGVAID 451 (496)
Q Consensus 397 ~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~-~~~~~~~~~----------------------~~~~~~~~~~--~~~~~~ 451 (496)
+.|++++++|+++|++|+|||+|||+|+++ ++..+++.+ ..++++...+ ++++.+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~Rll~~~~~Ea~~ll~eGvva~ 634 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGIKPGVDKEASAVAERCVMLMLNEAVRCLDEGVIRS 634 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCC
Confidence 888899999999999999999999999854 223333322 2344444454 678899
Q ss_pred hhhhh---HhhcccccccccCCCcceeccccccc
Q 010966 452 PKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKF 482 (496)
Q Consensus 452 ~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~ 482 (496)
++.+| +++.||++..-.-...+.-+|=+...
T Consensus 635 ~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~ 668 (699)
T TIGR02440 635 PRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVV 668 (699)
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHH
Confidence 99998 78999998665544444444444333
No 4
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=9.2e-83 Score=699.22 Aligned_cols=476 Identities=34% Similarity=0.553 Sum_probs=410.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCC----chhHHHHHHHHHHHHHhh
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEP----LGEAREIFKFARAQARKQ 76 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (496)
|+|||++++|+||+++||||+|||++++++++.++|++++.++.++.... .+...+ .......++.+++.+.++
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k~~~~~~ 243 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAKGMVAQK 243 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999997521221111 011000 111223456677776555
Q ss_pred C-CCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeC
Q 010966 77 A-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (496)
Q Consensus 77 ~-~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGa 155 (496)
. ++||+|..++++++.+...+++++++.|.+.|..++.|+++++++++|+++|+.++.+.. .....++|+||+|||+
T Consensus 244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~v~ViGa 321 (715)
T PRK11730 244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQAAVLGA 321 (715)
T ss_pred hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccceEEEECC
Confidence 4 589999999999999998899999999999999999999999999999999999886532 1223567999999999
Q ss_pred ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEecc
Q 010966 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (496)
Q Consensus 156 G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~ 235 (496)
|+||.+||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (715)
T PRK11730 322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV 401 (715)
T ss_pred chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 010966 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (496)
Q Consensus 236 e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~ 315 (496)
|++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|+
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~ 481 (715)
T PRK11730 402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA 481 (715)
T ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCC
Q 010966 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (496)
Q Consensus 316 ~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~ 394 (496)
+.+||.|++++|+|||++||++.++++||++++++|+++++||++|+ ++|||||||+++|.+|||+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~ 561 (715)
T PRK11730 482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP 561 (715)
T ss_pred HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999998888
Q ss_pred CCc--cccchHHHHHhcCCCccccCceeeeecCCC----CCCCChHHHH------------------------HHHHHHH
Q 010966 395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKK------------------------FIEKARS 444 (496)
Q Consensus 395 ~~~--~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~----~~~~~~~~~~------------------------~~~~~~~ 444 (496)
++. .+++++++|+++|++|+|||+|||+|+++. +...++.+.+ ++++...
T Consensus 562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nRll~~~~~Ea~~ 641 (715)
T PRK11730 562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQPKREFSDEEIIARMMIPMINEVVR 641 (715)
T ss_pred CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 764 246799999999999999999999996431 2334444332 2333333
Q ss_pred h--cCCccChhhhh---HhhcccccccccCCCcceeccccc
Q 010966 445 M--SGVAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGI 480 (496)
Q Consensus 445 ~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~ 480 (496)
+ ++++.+++.+| +++.||++..-.-.....-+|-++
T Consensus 642 ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~ 682 (715)
T PRK11730 642 CLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVAN 682 (715)
T ss_pred HHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHH
Confidence 3 57778899998 678999875443333333344333
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.3e-82 Score=693.32 Aligned_cols=477 Identities=33% Similarity=0.512 Sum_probs=415.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCC-C-CchhHHHHHHHHHHHHHhhCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI-E-PLGEAREIFKFARAQARKQAP 78 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 78 (496)
|+|||++++|+||+++||||+|+|+++++++|.++|+++.... +. .. ...++ . ++...+..+..+++++.++.+
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~-~~-~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPAR-RP-LP--VRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCcc-Cc-CC--chhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999998842110 00 00 00001 1 111223456678889999987
Q ss_pred -CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCCh
Q 010966 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (496)
Q Consensus 79 -~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~ 157 (496)
+|||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|+.+++.++.++. + ..+++++||+|||+|+
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 89999999999999999999999999999999999999999999999999998887553 2 2346799999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccC
Q 010966 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (496)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (496)
||++||..++ .+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 010966 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (496)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (496)
++++|+++|++++++++|++||+||||++++++|++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC
Q 010966 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (496)
Q Consensus 317 ~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~ 396 (496)
.+||.|++++|+|||++||++.++++||++++++|+++++||.+|+++|||+|||+++|.+|+|++.++++.+.+.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccchHHHHHhcCCCccccCceeeeecCCC---CCCCChHH----------------------HHHHHHHHHh--cCCc
Q 010966 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEV----------------------KKFIEKARSM--SGVA 449 (496)
Q Consensus 397 ~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~---~~~~~~~~----------------------~~~~~~~~~~--~~~~ 449 (496)
+.+++++++|+++|++|+|||+|||+|+++. +...++++ ..++++...+ ++++
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~Rll~~~~nEa~~ll~eGvv 639 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGITPQSRLSANEIAERCVMLMLNEAVRCLDEGII 639 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 7788899999999999999999999997532 12233332 2344455554 6788
Q ss_pred cChhhhh---HhhcccccccccCCCcceeccccccccc
Q 010966 450 IDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIKFNT 484 (496)
Q Consensus 450 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 484 (496)
.+++.+| +++.||++..-..-..+.-+|-+...++
T Consensus 640 a~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~ 677 (708)
T PRK11154 640 RSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAI 677 (708)
T ss_pred CCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHH
Confidence 8899998 7999999866554444444554444333
No 6
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=1.1e-70 Score=537.08 Aligned_cols=280 Identities=38% Similarity=0.679 Sum_probs=270.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
.++||+|||+|+||++||..++.+|++|+++|++++.+++++..+.+.+++++++|++++++.+..++++++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (496)
+||+|||+|+|++++|+++|+++++++++++|++||||++|++++++.+.+|+||+|+|||||++.|+|||++++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (496)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~ 383 (496)
++++++.+|.+.+||.|++++|+|||++||++.++++||++++.+|+ ++++||.+|+ ++|||||||+++|.+|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999996 9999999999 899999999999999999999
Q ss_pred HhhhhhhhhCCCC-cc-ccchHHHHHhcCCCccccCceeeeecC
Q 010966 384 ATGMQFIENFPER-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE 425 (496)
Q Consensus 384 ~~~~~l~~~~~~~-~~-~~~~l~~~~~~G~lG~k~g~GFY~y~~ 425 (496)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888733 33 678999999999999999999999985
No 7
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.5e-70 Score=490.44 Aligned_cols=280 Identities=36% Similarity=0.574 Sum_probs=266.0
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHhhhcceeccc
Q 010966 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-----FEKTISLLTGVL 219 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~ 219 (496)
.+++.|+|||+|.||++||+..+.+|++|+++|.+++.+.++.+.|.+.+.+..+++..+... ++..+++|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999999999999999999999988887765443 256788999999
Q ss_pred Ccc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE
Q 010966 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (496)
Q Consensus 220 ~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv 298 (496)
+.+ .++++|+||||+.|++++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||++.|+|||++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 875 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhc
Q 010966 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL 376 (496)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~ 376 (496)
+++.|+++++..+..|.+.+||+++.|+|.||||+||+|.||++||+++++.|. +-+|||.+|+ |.|+||||||+.|+
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 9999999999 99999999999999
Q ss_pred cCchhHHHhhhhhhhhCCCC--ccccchHHHHHhcCCCccccCceeeeec
Q 010966 377 VGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (496)
Q Consensus 377 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~~~~G~lG~k~g~GFY~y~ 424 (496)
+|||++.-+++-|++.+|+. +.|+|++.++|++|++|||+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999999764 5699999999999999999999999994
No 8
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-64 Score=498.00 Aligned_cols=279 Identities=33% Similarity=0.547 Sum_probs=270.0
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (496)
++++||+|||+|.||++||.+++.+|++|++||++++.++.+.+++.+.+++.+++|.++..+....+++++++++++++
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhC-CCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (496)
++||+|||||||++++|+++|+++++.+ ++++|++||||++++++++..+.+|+|++|+|||+|++.++++||+++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-HcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCch
Q 010966 304 SPQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (496)
Q Consensus 304 ~~e~~~~~~~l~~-~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld 380 (496)
++++++.+.+++. .+||.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999998 9999999998 999999999999999999
Q ss_pred hHHHhhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeee
Q 010966 381 VAIATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (496)
Q Consensus 381 ~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y 423 (496)
++.++++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999998874 468899999999999999999999998
No 9
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.2e-61 Score=511.17 Aligned_cols=282 Identities=35% Similarity=0.567 Sum_probs=270.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+++||+|||+|+||++||.+++.+|++|++||++++.++++.+++++.++..+++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (496)
+||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (496)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~ 383 (496)
++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. ++++||++|+ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 9999999999 899999999999999999999
Q ss_pred HhhhhhhhhC-CCC-ccccchHHHHHhcCCCccccCceeeeecCCC
Q 010966 384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (496)
Q Consensus 384 ~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~ 427 (496)
++++.+.+.+ ++. +.|++++++|+++|++|+|||+|||+|+++.
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~ 289 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEA 289 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCC
Confidence 9999888764 554 4467889999999999999999999998654
No 10
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.4e-60 Score=501.61 Aligned_cols=283 Identities=34% Similarity=0.544 Sum_probs=270.6
Q ss_pred cccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 144 ~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
.+++++|+|||+|.||++||.+++.+|++|++||++++.++++.+++.+.+++.+++|.++.++.+..++++++++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (496)
+++||+|||||||+.++|+.+|+++++.+++++|++||||+++++++++.+.+|+||+|+|||+|++.++|+|+++++.|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchh
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV 381 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~ 381 (496)
++++++.+.++++.+||.|++++|+|||++||++.++++||++++++|. ++++||++|+ ++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 9999999999999999999999999999999999999999999999986 9999999998 8999999999999999999
Q ss_pred HHHhhhhhhhhC-CC-CccccchHHHHHhcCCCccccCceeeeecCC
Q 010966 382 AIATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (496)
Q Consensus 382 ~~~~~~~l~~~~-~~-~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~ 426 (496)
.+++.+.+...+ ++ ++.+++++++|++.|++|+|||+|||+|+++
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~ 290 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADG 290 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCC
Confidence 999999888764 33 4557789999999999999999999999755
No 11
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-59 Score=466.67 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=263.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcceecccCcc-c
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (496)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+.+.+.++...+.+.++..+ .+...++++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 36899999999999999999999999999999999999999999888888888888887766 666778998888886 5
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (496)
+++||+||+|+||+.++|+++++++.+.+++++||+||||+++++++++.+.+|+||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCch
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld 380 (496)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +++|||++|+ ++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999999 599999999999999999999999997 9999999998 999999999999999999
Q ss_pred hHHHhhhhhhhhCCCCcc--ccchHHHHHhcCCCccccCceeeeec
Q 010966 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (496)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~lG~k~g~GFY~y~ 424 (496)
++.++++.+.+.+++.++ |++++++|+++|++|+|||+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 78899999999999999999999994
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.9e-59 Score=462.41 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=268.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++...++..++.|.++..+.+...++++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888888888888999988888888899988888 4689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (496)
+||+||+|+|++.++|+.+++++.+.+++++|+++|||+++++++++.+.+|.|++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (496)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~ 383 (496)
++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ ++++||.+|+ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HhhhhhhhhCCCCccccchHHHHHhcCCCccccCceeeeecCCC
Q 010966 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (496)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~ 427 (496)
++++.+...+++++.|++++.+|+++|++|+|||+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999898888888999999999999999999999998654
No 13
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-58 Score=458.21 Aligned_cols=277 Identities=35% Similarity=0.610 Sum_probs=266.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
|+||+|||+|.||.+||..++.+|++|+++|++++.++.+.+++.+.++...+.|.++..+......+++.+++++++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 67999999999999999999999999999999999999999999999999999999888888888889998888888999
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHH
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e 306 (496)
||+||+|+||+.++|+++++++.++++++++|+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|+++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e 162 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA 162 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHH
Q 010966 307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384 (496)
Q Consensus 307 ~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~ 384 (496)
+.+.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ |+|||+|||+++|.+|+|.+.+
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~ 242 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999998 9999999999 9999999999999999999999
Q ss_pred hhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeee
Q 010966 385 TGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (496)
Q Consensus 385 ~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y 423 (496)
+++.+.+.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999999874 457889999999999999999999998
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.6e-58 Score=458.46 Aligned_cols=278 Identities=32% Similarity=0.553 Sum_probs=262.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (496)
+++||+|||+|.||.+||..++.+|++|++||++++.++.+.+++.+ .++..++.|.++..+.+..++++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 36899999999999999999999999999999999999988877765 366677888888888888888898888887
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCC
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~ 302 (496)
.+++||+||||+|++.++|+++++++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCch
Q 010966 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (496)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld 380 (496)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||++|+ ++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred hHHHhhhhhhhhCCCCc-cccchHHHHHhcCCCcccc-----Cceeeee
Q 010966 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY 423 (496)
Q Consensus 381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~G~lG~k~-----g~GFY~y 423 (496)
++.++++.+++.+++++ .|++++++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998755 5778999999999999999 9999998
No 15
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=5.4e-58 Score=457.18 Aligned_cols=283 Identities=31% Similarity=0.555 Sum_probs=270.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+++||+|||+|.||.+||..|+.+|++|++||++++.++.+.+++.+.++..++.|.+++++.+..+++++++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999888888888888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (496)
+||+|||||+|++++|+.+|+++.+.+++++||+||||+++++++++.+.++.|++|+||++|++.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (496)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~ 383 (496)
++++.+.++++.+|+.+++++|.+||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999 999999999999999999999
Q ss_pred HhhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeeecCCCC
Q 010966 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRK 428 (496)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~ 428 (496)
++++.+.+.+++. +.|++++.+|+++|++|+|+|+|||+|+++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~~ 288 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKR 288 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCCC
Confidence 9999999999874 45888999999999999999999999987654
No 16
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-57 Score=453.81 Aligned_cols=281 Identities=32% Similarity=0.528 Sum_probs=267.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+++||+|||+|.||.+||..++.+|++|++||++++.++.+.+++.+.++..++.|.++..+.+..+.++++++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 57899999999999999999999999999999999999999999998888888889888877777888899888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCH
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (496)
+||+||+||||+.++|+.+++++.+.++++++|+||||+++++++++.+.+|+|++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHH
Q 010966 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (496)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~ 383 (496)
++++.+.++++.+|+.|++++|.|||++||++.++++|++.++++|+ ++++||.+|+ ++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999 999999999999999999999
Q ss_pred HhhhhhhhhCCCC-ccccchHHHHHhcCCCccccCceeeeecCC
Q 010966 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (496)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~ 426 (496)
++++.+++.+++. +.|++++.+|++.|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999988874 457789999999999999999999999654
No 17
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.4e-56 Score=445.86 Aligned_cols=269 Identities=26% Similarity=0.389 Sum_probs=255.6
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC--c-ccccCC
Q 010966 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 227 (496)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 227 (496)
||++||..++.+|++|+++|++++ .++++.+++.+.++..+++|.+++++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467789999999999999999999999999999998764 3 568999
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHH
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~ 307 (496)
|+|||||||++++|+.+|+++++.+++++||+||||++++++|++.+.+|+|++|+|||+|++.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhccCchhH
Q 010966 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (496)
Q Consensus 308 ~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~Gld~~ 382 (496)
++.+.++++.+||.|++++|.+||++||++.++++|++.++++|+ ++++||.+|+ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999986 9999999999 99999 699999999999999
Q ss_pred HHhhhhhhhhCCC-CccccchHHHHHhcCCCccccCceeeeecCC
Q 010966 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (496)
Q Consensus 383 ~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~ 426 (496)
.++++.+.+.+++ ++.|++++++|+++|++|+|||+|||+|++.
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~~ 285 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV 285 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCCC
Confidence 9999999998887 5668899999999999999999999999653
No 18
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.7e-56 Score=445.07 Aligned_cols=278 Identities=22% Similarity=0.298 Sum_probs=249.4
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-c
Q 010966 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (496)
++++||+|||+|+||++||..|+.+|++|++||++++.++.+..++.+.++...+.| +.. ....++++.+++++ .
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAP---GASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCh---hhHHhhceecCCHHHH
Confidence 457899999999999999999999999999999999999999999998888888877 333 23446888888885 5
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (496)
+++||+|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhcc
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v-~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~ 377 (496)
++++++.+.+|++.+||.|+++ +|.|||++||++.++++||++++++|+ |++|||++|+ |+|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 699999999999999999999999997 9999999999 99987 9999999999
Q ss_pred Cchh-HHHhhhhhhhhCCCC---ccccchHHHHHh------cCCCccccCceeeeecCC
Q 010966 378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDER 426 (496)
Q Consensus 378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~~~------~G~lG~k~g~GFY~y~~~ 426 (496)
|+|. +.+.++.+.+.+.+. +.++++..+|++ ++.+|.++..+||.|.+.
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~ 299 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRDE 299 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9998 455556666554321 223457777777 789999999999999753
No 19
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.7e-49 Score=394.38 Aligned_cols=279 Identities=31% Similarity=0.535 Sum_probs=248.5
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-c
Q 010966 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (496)
++++||+|||+|.||++||..|+++|++|++||++++.++...+.+.+........+. ....+.+++.+++++ .
T Consensus 2 ~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 2 NPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAA 76 (311)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHH
Confidence 3578999999999999999999999999999999999988877665543332222111 012335566677775 4
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (496)
+++||+||+|||++.++|+.+++++.+.++++++|+|+||+++++++++.+.++.+|+|+||++|++.++++++++++.|
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t 156 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKT 156 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhcc
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~ 377 (496)
++++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. ++++||.+|+ ++||| +|||+++|.+
T Consensus 157 ~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~ 236 (311)
T PRK06130 157 SPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMN 236 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhh
Confidence 99999999999999999999996 78999999999999999999999986 9999999998 99998 7999999999
Q ss_pred CchhHHHhhhhhhhhCCCCccccchHHHHHhcCCCccccCceeeeecCCCC
Q 010966 378 GFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK 428 (496)
Q Consensus 378 Gld~~~~~~~~l~~~~~~~~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~ 428 (496)
|+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|++++.
T Consensus 237 Gl~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~~ 287 (311)
T PRK06130 237 GLDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPERR 287 (311)
T ss_pred ccchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCCH
Confidence 999999999999999988877889999999999999999999999976543
No 20
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=370.23 Aligned_cols=319 Identities=39% Similarity=0.575 Sum_probs=288.4
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCC
Q 010966 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (496)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (496)
||++||..+..+|++|++.|.|...++.+..++...+.+.+++++++..+......+++.+.|+..++++|+|||+|.|+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 010966 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (496)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (496)
+++|++++.+|++.+++++|++||||++++.++++.+++|++++|+|||+|++.|+++|++.+..|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEecCcccchhhchHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCcchhHhhhccCchhHHHhhhhhhhhCCCC
Q 010966 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (496)
Q Consensus 318 lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~-g~~~~~ID~a~~~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~ 396 (496)
.|+.|+++++++||.+||++.+|..++.+++.+ |++|.++|.....||||+||+.+.|..|+|+..+....+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999998877 8999999999999999999999999999999998887776666533
Q ss_pred ccccchHHHHHhcCCCccccCceeeeecCCCCCCCCh-H--------------------------HHHHHHHHHHh--cC
Q 010966 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-E--------------------------VKKFIEKARSM--SG 447 (496)
Q Consensus 397 ~~~~~~l~~~~~~G~lG~k~g~GFY~y~~~~~~~~~~-~--------------------------~~~~~~~~~~~--~~ 447 (496)
+.++|++.|+.|+|||+|||.|+++.+...++ + ..+.+++.-.| ++
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~~r~~~~ed~v~~~~~p~VnEal~~l~EG 315 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPNPRVADDEDFVEFLLSPFVNEALRCLLEG 315 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCCcccCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence 68899999999999999999998763332222 1 22334444444 68
Q ss_pred CccChhhhh---HhhcccccccccCCCcceecccccc
Q 010966 448 VAIDPKVLS---FFLTGYSKLCCTGVFPLTVLGAGIK 481 (496)
Q Consensus 448 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~ 481 (496)
++..+..+| |||.||+|+....-++-...|.+..
T Consensus 316 i~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki 352 (380)
T KOG1683|consen 316 LKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKI 352 (380)
T ss_pred HhcCccccceeeeeccCCCCcCCCceeeeeccChHHH
Confidence 888888888 8999999999888777666666543
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.5e-41 Score=338.93 Aligned_cols=263 Identities=24% Similarity=0.337 Sum_probs=244.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (496)
+|++|+|||+|.||++||..|+++|++|++||++++.++.+.+++...++...+.|.++..+....+++++.+++++ .+
T Consensus 1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 36799999999999999999999999999999999999999999999998888999888777788888888888885 57
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCC
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (496)
++||+||+|+|++.++|+.+++++.+.++++++++||||+++++++++.+.++.++++.|||+|++.++++|+++++.|+
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~ 160 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTA 160 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhcc-
Q 010966 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV- 377 (496)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~- 377 (496)
+++++.+.++++.+|+.|++++ +.+||++||++.++++||+.++++|. |+++||++++ ++|++ +|||++.|..
T Consensus 161 ~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~ 240 (308)
T PRK06129 161 PATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNA 240 (308)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccc
Confidence 9999999999999999999995 88999999999999999999999886 9999999999 89987 8999999987
Q ss_pred --CchhHHHhhhhhhhhCCCCc-cccchHHHHHh
Q 010966 378 --GFGVAIATGMQFIENFPERT-YKSMIIPIMQE 408 (496)
Q Consensus 378 --Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~~~ 408 (496)
|++........++..+.+.. .|+|++++|++
T Consensus 241 ~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 241 PGGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred cccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 89999998888888877754 47788888887
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=6.3e-41 Score=309.02 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=161.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (496)
||+|||+|.||++||.+++.+|++|++||++++.++.+.+++.+.++..+++|.+++++....+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHH
Q 010966 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (496)
Q Consensus 229 lVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~ 308 (496)
+||||+||++++|+++|++|++.+++++||+||||++++++|++.+.+|+||+|+|||+|++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEecCc
Q 010966 309 VDLLDIGKKIKKTPIVVGNC 328 (496)
Q Consensus 309 ~~~~~l~~~lGk~~v~v~d~ 328 (496)
+.+.+|++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999873
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=5.6e-38 Score=332.91 Aligned_cols=244 Identities=23% Similarity=0.317 Sum_probs=207.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (496)
+++||+|||+|+||++||..|+++|++|++||++++.++...+.+...... . +.+.... ....++++++++++ .+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~-~--~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERA-Y--AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHH-H--hhhccch-hhhhhceEeeCCHHHHh
Confidence 467999999999999999999999999999999999887643322221111 1 1111110 11234567777774 68
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCC
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (496)
++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.++.++++.|||||++.++++|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhhccC
Q 010966 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (496)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D~~G 378 (496)
+++++.+.++++.+|+.|++++ +.+||++||++.++++||+.++++|. |+++||++++ ++|+. +|||++.|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999995 89999999999999999999999885 9999999999 87753 89999999998
Q ss_pred ch-hHHHhhhhhhhhC
Q 010966 379 FG-VAIATGMQFIENF 393 (496)
Q Consensus 379 ld-~~~~~~~~l~~~~ 393 (496)
++ .+.+.++++.+.+
T Consensus 239 ~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL 254 (495)
T ss_pred cHHHHHHHHHHhchhh
Confidence 54 4556666666554
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=261.08 Aligned_cols=229 Identities=28% Similarity=0.462 Sum_probs=211.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHhhhcceecccCcc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK----GKMTQEKFEKTISLLTGVLDYE 222 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~~ 222 (496)
..||+|+|.|..|+++|..|++.||+|.+||+.++++.-+++.+++.+.++-+. |.++. ++.+..|..+++++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccHH
Confidence 469999999999999999999999999999999999999999998888777655 44553 45677888899985
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCC
Q 010966 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (496)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (496)
.++++=.|-|||||++++|+++|+++++.+.+.+|++|+||++.++.+.+.+.+.++++-.||.|||...||||++|.|
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaP 159 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAP 159 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---cchhHhhh
Q 010966 302 QTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLAD 375 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p---~GPf~l~D 375 (496)
-|+++++++..++.+.+|..|+..+ +.-||.+||+..+++||.-+++..|+ +..|+|.+|. |+|.. .||+|.+.
T Consensus 160 wTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 160 WTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred CCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhh
Confidence 9999999999999999999999885 67899999999999999999999998 9999999999 99976 59999887
Q ss_pred ccC
Q 010966 376 LVG 378 (496)
Q Consensus 376 ~~G 378 (496)
+--
T Consensus 240 LNA 242 (313)
T KOG2305|consen 240 LNA 242 (313)
T ss_pred cCc
Confidence 654
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=5.4e-29 Score=263.88 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=153.5
Q ss_pred hCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (496)
Q Consensus 251 ~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (496)
.+.+++++++++++.+.+..+....+|+|++|+|||+|++.++++||++++.|++++++.+.++++.+||.|++++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 34678888888888778888777778999999999999999999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCCC-CccccchHHHHH
Q 010966 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (496)
Q Consensus 331 ~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~ 407 (496)
|++||++.++++||++++++|+ +++|||.+|+ |+|||+|||+|+|.+|+|+++++++.++..+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999986 556889999999
Q ss_pred hcCCCccccCceeee
Q 010966 408 EDKRAGETTRKGFYL 422 (496)
Q Consensus 408 ~~G~lG~k~g~GFY~ 422 (496)
++| +.||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 986 66865
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.93 E-value=1.7e-26 Score=191.49 Aligned_cols=94 Identities=40% Similarity=0.635 Sum_probs=87.5
Q ss_pred cchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcchhHhhhccCchhHHHhhhhhhhhCCCCcc-ccchHHHH
Q 010966 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 406 (496)
Q Consensus 330 G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 406 (496)
||++||++.++++||++++++|+ |+++||.+++ ++|||+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 899999999999999999999999999999998844 68999999
Q ss_pred HhcCCCccccCceeeee
Q 010966 407 QEDKRAGETTRKGFYLY 423 (496)
Q Consensus 407 ~~~G~lG~k~g~GFY~y 423 (496)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.90 E-value=5.2e-22 Score=210.09 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=113.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCcch
Q 010966 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (496)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~-~~~~ID~a~~-~~g~p~GP 370 (496)
..+||++++.|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ |+|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999999 8999999999 99999999
Q ss_pred hHhhhccCchhHHHhhhhhhhhCCC-CccccchHHHHHhcC
Q 010966 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (496)
Q Consensus 371 f~l~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G 410 (496)
|+|+|.+|+|+++++++.+++.+++ ++.|+++|++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999985 556889999999987
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.77 E-value=1.6e-17 Score=161.53 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=142.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
+||+|||+|.||.+||.+|.++||+|++||+++++..... ...|... ..+..+.+++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~Ga~~------------a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAGATV------------AASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcCCcc------------cCCHHHHHHhC
Confidence 4899999999999999999999999999999998843321 1234211 12234678999
Q ss_pred CEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeecccc-CcCCCC------CeE
Q 010966 228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHVM------PLL 295 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~-~P~~~~------~lv 295 (496)
|+||.|||.+.++...++. .+.+.+++++++++.| |+++ .++++.+. -.|.+|+ .|+... ..+
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECC-CCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999999888777774 5777788999887643 4443 35666553 2377787 466542 344
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (496)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~~~----~~ea~~l~~-~g~~~~~ID~a~~-~~g 365 (496)
.|+.| .+++.+++++++++.+|+.++++++. .|. ++|+++... +.||+.+.+ .|++++.+..++. +++
T Consensus 134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~ 211 (286)
T COG2084 134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAA 211 (286)
T ss_pred EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccc
Confidence 45554 38999999999999999999999864 444 788888754 688998875 6999999999998 543
No 29
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.74 E-value=4.4e-17 Score=162.33 Aligned_cols=187 Identities=17% Similarity=0.303 Sum_probs=137.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (496)
||+|||+|.||.+||..|+++|++|++||++++.++... +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876532 22321 1122235678999
Q ss_pred EEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeeccccC-cCC------CCCeEE
Q 010966 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFS-PAH------VMPLLE 296 (496)
Q Consensus 229 lVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~~-P~~------~~~lve 296 (496)
+||+|+|++..++..++. .+.+.+++++++++ +|+.++ .++.+.+... |+||+. |+. ....+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999998877766553 35666788888874 444444 3566666432 566654 322 123345
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCceEEecC-ccc---chhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (496)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G---~i~nril~~~----~~ea~~l~~-~g~~~~~ID~a~~-~~g 365 (496)
++.+ .+++.++.+.++++.+|+.++++++ .+| +++|+++... ++|++.+.+ .|++++++.+++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3789999999999999999999975 556 4788888765 789998875 6899999999998 544
No 30
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.72 E-value=2.9e-16 Score=156.82 Aligned_cols=188 Identities=18% Similarity=0.274 Sum_probs=138.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
+++|+|||+|.||..+|..+++.|++|++||++++..+... +.| +..++++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 46899999999999999999999999999999998766532 122 1223344 3468
Q ss_pred CCCEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeeccccC-cCCC------CC
Q 010966 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MP 293 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~hf~~-P~~~------~~ 293 (496)
+||+||+|+|+...++..++. .+.+.+++++++++ +|+.++. ++++.+... |.||++ |+.. ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 999999999988877665543 46677888898874 4444443 566655432 667765 3322 13
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccch---hhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 010966 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (496)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i---~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~-~ 363 (496)
.++++.+ ++++.++.+.++++.+|+.++++++ ++|+. +|+++.. .++|++.+.+ .|++++++++++. +
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3556555 3689999999999999999999974 56664 7777765 3799998876 6889999999998 5
Q ss_pred cC
Q 010966 364 FG 365 (496)
Q Consensus 364 ~g 365 (496)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 44
No 31
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.71 E-value=9.4e-16 Score=151.74 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=120.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
+||+|||+|.||+++|..|..+|++|++||++++.++.+. +.|.+. ..+++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 4899999999999999999999999999999998876643 223221 123344567899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC------------CCCeE
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~------------~~~lv 295 (496)
|+||+|+|.+.. .++++++.+.++++++|.+ +++++...+........+|+++||+.+.. ..+.+
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999997653 4678899888888887754 55555555555444455799999986432 24556
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
.+++++.++++.++.+.++++.+|..++.++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 68899999999999999999999999998863
No 32
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.63 E-value=2e-14 Score=137.42 Aligned_cols=192 Identities=20% Similarity=0.209 Sum_probs=138.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
..++|++||+|.||++|+.+|.++||+|++||++.++.+... +.|... ..+..|..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~v------------~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGARV------------ANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchhh------------hCCHHHHHh
Confidence 467999999999999999999999999999999999877643 334211 123346678
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHhhCCCCeeEeccCCccc---HHHHHhhhcCCCeeeecccc-CcCCC------CC
Q 010966 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTID---LNLIGERTYSKDRIVGAHFF-SPAHV------MP 293 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~~~---~~~la~~~~~~~r~ig~hf~-~P~~~------~~ 293 (496)
+||+||.+||...+++..++.. +.+.++++......+||++ ..+|++.+.+. +..|. .|++. ..
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence 9999999999998888877764 3333344433312234443 34777776432 34444 46653 23
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHHHH----HHHHHHHH-HcCCCHHHHHHHHH-h
Q 010966 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFPY----TQAAFLLV-ERGTDLYLIDRAIT-K 363 (496)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~~~----~~ea~~l~-~~g~~~~~ID~a~~-~ 363 (496)
.+.++.+ .+++.++...++++.+||+.+.++. +.|. ++|+++... +.|++.+. ..|.|+..+-+++. |
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4556666 6899999999999999999999975 3443 788888654 58888886 47999999988887 5
Q ss_pred cCC
Q 010966 364 FGM 366 (496)
Q Consensus 364 ~g~ 366 (496)
-.|
T Consensus 245 ~~~ 247 (327)
T KOG0409|consen 245 RCW 247 (327)
T ss_pred Ccc
Confidence 444
No 33
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.63 E-value=8.7e-15 Score=150.34 Aligned_cols=171 Identities=21% Similarity=0.242 Sum_probs=123.6
Q ss_pred cceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (496)
Q Consensus 146 ~~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (496)
.+++|+||| +|.||+++|..|..+|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence 457999999 9999999999999999999999986310 0 0 0225
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCCCCCeEE--EEeC
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~~~~lve--iv~~ 300 (496)
++||+||+|+|++. ...++.++.+ +++++||++++|+. ++..+.+... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 68999999999875 5678888888 89999999998864 4567766543 3699999998775543322 4455
Q ss_pred CCCCHHHHHHHHHHHHHcCCceEEecC-cccchhhc--hHHHH--HHHHHHHHHcCCCHHHH
Q 010966 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNR--MFFPY--TQAAFLLVERGTDLYLI 357 (496)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~i~nr--il~~~--~~ea~~l~~~g~~~~~I 357 (496)
+.++++.++.+.++++.+|..++.++. ..+.++-. .+-.+ +.++..+.+.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 667889999999999999999999863 34443322 22222 23344455556665554
No 34
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.63 E-value=2.6e-14 Score=140.57 Aligned_cols=185 Identities=17% Similarity=0.126 Sum_probs=136.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (496)
+||+|||+|.||.+|+..|.++|+ +|+++ |++++..+... +.| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 589999999999999999999998 89999 99988765431 122 1223333
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeC
Q 010966 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (496)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~ 300 (496)
+.+++||+||.|++ ++...+++.++.+.++++++++|.+++++++++....+.. ++++.+|+.|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 44789999999995 4456788888888888889888999999999998877544 788888988876655444 5567
Q ss_pred CCCCHHHHHHHHHHHHHcCCceEEecCc--------ccchhhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--------TGFAVNRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (496)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~--------~G~i~nril~~~~~ea~~--l~~~g~~~~~ID~a~~ 362 (496)
..++++..+.++++++.+|. ++++++. .|. ...+ ..++.+++. ....|+++++.-+++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~-g~a~-~~~~~~a~~ea~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGS-GPAY-IFLAIEALADGGVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcC-HHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78899999999999999999 7776431 111 0111 122223322 4457999999888876
No 35
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.58 E-value=1.4e-13 Score=135.43 Aligned_cols=189 Identities=16% Similarity=0.152 Sum_probs=139.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (496)
+||+|||+|+||.+|+..|.++|+ +|+++|++++.++...+. .| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 489999999999999999999885 699999999876653211 12 1123333 4
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE-eCC
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~~~ 301 (496)
.+++||+||.|++. ..-.++++++.+.++++++++|...++++++|.+.++.+.+++..+|+.|+.....+..+ +++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 46899999999984 456788899988888899999999999999999998766689999999999877766654 778
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEecCcc--cc-hhhchH---HHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCT--GF-AVNRMF---FPYTQAAFL--LVERGTDLYLIDRAIT 362 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~~--G~-i~nril---~~~~~ea~~--l~~~g~~~~~ID~a~~ 362 (496)
..+++..+.+..+|+.+|+. +.+.+.. .+ .+.-.. ..++.|++. .++.|++.++-.+...
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA 205 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88999999999999999997 4444310 00 000000 122344442 3457888777776664
No 36
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.58 E-value=1.1e-13 Score=138.01 Aligned_cols=183 Identities=19% Similarity=0.230 Sum_probs=127.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
+||+|||+|.||.+||..|+++|++|++||++++.++... +.|. ..+++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999998876532 1221 122333 45789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeecccc-CcCCC-------CC
Q 010966 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~-~P~~~-------~~ 293 (496)
||+||.|+|++..++..++. .+.+.++++++++. +|+.++ .++++.+... |.+|. .|+.. ..
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~~----g~~~ldapV~g~~~~a~~g~ 132 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQAK----GFSMMDVPVGRTSDNAITGT 132 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEccCCCCHHHHHhCc
Confidence 99999999988766654442 35556778887754 444444 3555555321 33333 24322 23
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 010966 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (496)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~ 362 (496)
++-++.+ +++.++.++++++.+|+..+++++. .|. ++|+++.. .+.|++.+.+ .|++++.+-.++.
T Consensus 133 l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 133 LLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred EEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4434333 8899999999999999999999862 232 56765543 3688888765 7999999877776
No 37
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.57 E-value=2.1e-13 Score=134.20 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=134.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (496)
|++|+|||+|.||..++..+.++| ++|.++|++++..+...+.. | +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 578999999999999999999999 78999999998766532210 1 1122333 3
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeCC
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~ 301 (496)
.+.+||+||.|+|.. .-.++++++.+.+ +++|+|.+++++.+.+...++...+++.+||+.|......+. ++++.
T Consensus 59 ~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 467899999999744 4567788887766 467888889999999988876667899999998876655554 56778
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEecCc--ccch-hhch---HHHHHHHHH-HH-HHcCCCHHHHHHHHH
Q 010966 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFA-VNRM---FFPYTQAAF-LL-VERGTDLYLIDRAIT 362 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d~--~G~i-~nri---l~~~~~ea~-~l-~~~g~~~~~ID~a~~ 362 (496)
.++++..+.+..+++.+|..+.+..+. .... ..-. +..++.+++ .. ...|+++++..+.+.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999999999744343221 1111 1111 111233443 33 457898888777665
No 38
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.57 E-value=2.9e-14 Score=129.66 Aligned_cols=146 Identities=20% Similarity=0.223 Sum_probs=101.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
|+||+|||+|.||+.||.+|+++|++|++||+++++++...+ .| .+...+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------AG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------TT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------hh-------------hhhhhhhhhHhh
Confidence 689999999999999999999999999999999998876532 22 3344554 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeeccccC-cCC-------CC
Q 010966 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFS-PAH-------VM 292 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~~-P~~-------~~ 292 (496)
+||+||.|+|.+.+++ +++.. +.+.+.++.+++. +|+.++ .++++.+.. .|.||.. |+. ..
T Consensus 57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhhh-hhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 8999999999877654 56666 8888888988874 334444 355555532 2455552 332 24
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEe
Q 010966 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (496)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v 325 (496)
.+.-++.| +++.++.++++++.+|+..+++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence 66667776 7899999999999999988743
No 39
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.55 E-value=2.4e-13 Score=134.64 Aligned_cols=189 Identities=15% Similarity=0.177 Sum_probs=134.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
.+||+|||+|.||.+|+..|.++| ++|+++|++++ .++.... +.| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 469999999999999999999998 78999999764 4333211 011 1223333
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCC-eEEEEe
Q 010966 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVR 299 (496)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~-lveiv~ 299 (496)
+.+++||+||.||+.+ .-.+++.++.+.+.++++|+|..++++++.+.+.++...++++.||+.|..... +.-+++
T Consensus 60 ~e~~~~aDvVilav~p~--~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPK--DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 4468999999999854 345667888887888899999889999999988776556799999987765533 444557
Q ss_pred CCCCCHHHHHHHHHHHHHcCCceEEecCc--c---cch--hhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 010966 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFA--VNRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (496)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~--~---G~i--~nril~~~~~ea~~--l~~~g~~~~~ID~a~~ 362 (496)
++..+++..+.+.++|+.+|+.. ++.+. . |.. ... +..++.|++. ....|+++++.-+++.
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77888999999999999999844 44321 0 000 001 1223444443 3567999988888876
No 40
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.53 E-value=3.9e-13 Score=133.66 Aligned_cols=189 Identities=15% Similarity=0.180 Sum_probs=126.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
+||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|.. ...+..+.+++|
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~a 56 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEAS 56 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcC
Confidence 3799999999999999999999999999999874 2221 122311 112223456899
Q ss_pred CEEEEeccCChHHHHHHHHH--HHhhCCCCeeEeccCCcccHH---HHHhhhc-CCCeeeeccccCc--C--CCCCeEEE
Q 010966 228 DMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSP--A--HVMPLLEI 297 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~~~~~---~la~~~~-~~~r~ig~hf~~P--~--~~~~lvei 297 (496)
|+||.|||.+..++..++.+ +.+.+.++.+++.. ||.++. ++++.+. +..+|+. +|+.. + ....+.-+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIM 134 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEE
Confidence 99999999887766555432 44556777777643 444443 5555543 2334444 23321 1 12344444
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHHH----HHHHHHHHH-HcCCCHHHHHHHHH-hcC
Q 010966 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLV-ERGTDLYLIDRAIT-KFG 365 (496)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~~----~~~ea~~l~-~~g~~~~~ID~a~~-~~g 365 (496)
+.+ +++.++.++++++.+|+..+++++. .|. ++|+++.. .+.|++.+. ..|++++.+-+++. +.+
T Consensus 135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~ 209 (292)
T PRK15059 135 VGG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA 209 (292)
T ss_pred EcC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence 444 7899999999999999999999863 333 56676654 268888876 47999999877776 543
No 41
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.53 E-value=1.9e-13 Score=140.05 Aligned_cols=176 Identities=18% Similarity=0.196 Sum_probs=124.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||+|.||++||..|.++|++|.+|+++++..+.... ...+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998875443210 1112111 112333 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHh-hCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCC------------C
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~------------~ 291 (496)
||+||+|+|.+ ....++.++.+ .++++++|++.+|+. .++.+...+....+|+|.||+...+ .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999975 46788899987 478888887666553 3345555545677999999975321 2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec-CcccchhhchHH--HHHHHHH
Q 010966 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAF 345 (496)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~G~i~nril~--~~~~ea~ 345 (496)
....-+++++.++++.++.+.++++.+|..++.+. +....++..+.. .++.+++
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 33455788888999999999999999999999885 344555443332 3444444
No 42
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.52 E-value=1.8e-14 Score=159.33 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCceEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhH
Q 010966 309 VDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVA 382 (496)
Q Consensus 309 ~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~ 382 (496)
+.+.+++..+|+.|+.+++.+|||+||++.++++||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.+
T Consensus 625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v 704 (737)
T TIGR02441 625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL 704 (737)
T ss_pred HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence 34556667788888766778999999999999999999999997 9999999999 999996 99999999999999
Q ss_pred HHhhhhhhhhCCCCccccchHHHHHhc-CCCccccCceee
Q 010966 383 IATGMQFIENFPERTYKSMIIPIMQED-KRAGETTRKGFY 421 (496)
Q Consensus 383 ~~~~~~l~~~~~~~~~~~~~l~~~~~~-G~lG~k~g~GFY 421 (496)
+++++.+...+++++.|++++.+|+++ | +.||
T Consensus 705 ~~~~~~l~~~~g~~~~p~~lL~~~~~~~g-------~~f~ 737 (737)
T TIGR02441 705 VDKMEKYAAAYGVQFTPCQLLLDHAKSPG-------KKFY 737 (737)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHhcC-------CCCC
Confidence 999999999999988899999999987 6 6676
No 43
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.52 E-value=3.3e-13 Score=134.23 Aligned_cols=181 Identities=20% Similarity=0.238 Sum_probs=129.4
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccCCCEE
Q 010966 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (496)
Q Consensus 152 VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 230 (496)
|||+|.||.+||..|+++|++|++||++++..+... +.|. ..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876532 1221 123333 457899999
Q ss_pred EEeccCChHHHHHHH---HHHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeeccccC-cCCC-------CCeEE
Q 010966 231 IEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV-------MPLLE 296 (496)
Q Consensus 231 Ieav~e~~~~k~~v~---~~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~hf~~-P~~~-------~~lve 296 (496)
|.|||.+..+. .++ ..+.+.+++++++++. |+++++ ++++.+.. .|.+|.. |+.. ..+..
T Consensus 57 il~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid~-st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 57 ITMLPAGQHVI-SVYSGDEGILPKVAKGSLLIDC-STIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred EEeCCChHHHH-HHHcCcchHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence 99999766554 444 5677777888877644 455554 44444432 2555543 4432 34444
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCceEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 010966 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (496)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d-~~G~---i~nril~~----~~~ea~~l~~-~g~~~~~ID~a~~-~~g 365 (496)
++.+ +++.++.+.++++.+|+..+++++ ..|. ++|+++.. .+.|++.+.+ .|++++++.+++. +.|
T Consensus 131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 4544 678899999999999999999986 4555 66777654 3689998865 7899999999998 554
No 44
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.50 E-value=8.5e-13 Score=138.80 Aligned_cols=191 Identities=15% Similarity=0.215 Sum_probs=130.1
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc--
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (496)
.+++|+|||+|.||.+||.+|+++|++|++||+++++.+...+.. ...|.. .+....+.++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 456899999999999999999999999999999999887654210 001210 1112333332
Q ss_pred --ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeecccc-CcCC-------C
Q 010966 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFF-SPAH-------V 291 (496)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~-~P~~-------~ 291 (496)
++.+|+||.|||.+..+. +++..+.+.+.++.|++..+++- ...++++.+.. -|.||+ .|+. .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~~ 142 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGARN 142 (493)
T ss_pred hcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhcC
Confidence 345999999999887654 55677888888888777543332 23355555532 256665 3443 2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCc------eEEecC-cccc---hhhchHH-H---HHHHHHHHHHc--CCCHH
Q 010966 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVNRMFF-P---YTQAAFLLVER--GTDLY 355 (496)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~---i~nril~-~---~~~ea~~l~~~--g~~~~ 355 (496)
++ .+++| .++++++.++++++.++.. ..++++ +.|. ++|+.+. . .+.|++.+.+. |++++
T Consensus 143 G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~ 218 (493)
T PLN02350 143 GP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNE 218 (493)
T ss_pred CC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Confidence 34 45555 4889999999999999954 777876 2333 4555443 3 36899988764 88999
Q ss_pred HHHHHHH
Q 010966 356 LIDRAIT 362 (496)
Q Consensus 356 ~ID~a~~ 362 (496)
++-+++.
T Consensus 219 ~l~~vf~ 225 (493)
T PLN02350 219 ELAEVFA 225 (493)
T ss_pred HHHHHHH
Confidence 9988853
No 45
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.50 E-value=1.1e-12 Score=129.67 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=110.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|... ...+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~ 57 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELK 57 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHh
Confidence 389999999999999999999996 7999999998766532 223211 122333455
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-HHHHHhhhcCCCeeeeccccC------cCC------CC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHFFS------PAH------VM 292 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-~~~la~~~~~~~r~ig~hf~~------P~~------~~ 292 (496)
+||+||.|+|.+. ..+++.++.+ ++++++|++.+|+.+ +.+..... .+.+|++.||+. |.. ..
T Consensus 58 ~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 58 KCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred cCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 6999999999654 4567788888 888888887555432 22222211 235799999984 322 24
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
..+.+++.+.++++.++.+.++++.+|..++.++.
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 46677888888999999999999999999999873
No 46
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.49 E-value=1.6e-12 Score=136.25 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=119.7
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
|||+||| +|.||+++|..|..+|++|+++|++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 4899998 7999999999999999999999999876533211 112 1123333 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCCCeeeeccccCc----CCCCCeEEEEe
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR 299 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~~r~ig~hf~~P----~~~~~lveiv~ 299 (496)
+||+||.|+|.+ ....++.++.+.++++++|++.+|+ .+.+.+.+.++...+|++.||+.. ......+.+++
T Consensus 58 ~aDvVIlavp~~--~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPIN--VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHH--HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 999999999965 3457889999889999999888774 455666666655568999998743 33456777888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 300 TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
++.++++.++.+.++++.+|..++.+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999988875
No 47
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.47 E-value=1.4e-12 Score=127.90 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=117.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC--cc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE 222 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 222 (496)
.++|+|+|+|.||+++|..+..+|+.|.+++++.+ .++.+ .+.|.... .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence 46999999999999999999999998866666654 33332 12332221 1122 35
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCC------CCCe
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH------VMPL 294 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~------~~~l 294 (496)
.+.++|+||.|||- ..-.++++++.+.++++++|+..+|+.. ++.+.+..+...+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavPi--~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVPI--EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEeccH--HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 67889999999984 4566889999999999999999988763 455555543323899999997662 2355
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+-+++++.++.+.+..+.++++.+|..++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 66789988999999999999999999888885
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.46 E-value=2.1e-12 Score=135.61 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=131.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc---
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--- 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 223 (496)
|.+|+|||+|.||++||.+|+++|++|++||++++..+...+... ..|. .+..+.++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~ 62 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN 62 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence 358999999999999999999999999999999998876543100 0121 1223445433
Q ss_pred -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH--HHHhhhcCCCeeeecccc-CcCCC-------C
Q 010966 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------M 292 (496)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~--~la~~~~~~~r~ig~hf~-~P~~~-------~ 292 (496)
++++|+||.+|+.... ..+++.++.+.+.++.||+..+++.+.+ +..+.+.. -|.||+ .|+.. +
T Consensus 63 ~l~~~d~Iil~v~~~~~-v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~----~Gi~fldapVSGG~~gA~~G 137 (470)
T PTZ00142 63 SLKKPRKVILLIKAGEA-VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE----KGILYLGMGVSGGEEGARYG 137 (470)
T ss_pred cCCCCCEEEEEeCChHH-HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEcCCCCCCHHHHhcC
Confidence 3368999999987654 4567788999999999887665554333 34444321 266666 35443 3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCc------eEEecC-cccc---hhh-chHHH---HHHHHHHHHH--cCCCHHH
Q 010966 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVN-RMFFP---YTQAAFLLVE--RGTDLYL 356 (496)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~------~v~v~d-~~G~---i~n-ril~~---~~~ea~~l~~--~g~~~~~ 356 (496)
+ .+++| .++++++.++++++.++.. ..++++ +.|. +++ -+... .+.|++.+.+ .|+++++
T Consensus 138 ~--~lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~ 213 (470)
T PTZ00142 138 P--SLMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEE 213 (470)
T ss_pred C--EEEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence 4 35555 3789999999999999987 577775 3443 344 44443 3689999875 6889999
Q ss_pred HHHHHH
Q 010966 357 IDRAIT 362 (496)
Q Consensus 357 ID~a~~ 362 (496)
+-.++.
T Consensus 214 l~~v~~ 219 (470)
T PTZ00142 214 LSEVFN 219 (470)
T ss_pred HHHHHH
Confidence 988885
No 49
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.45 E-value=5.3e-12 Score=126.10 Aligned_cols=189 Identities=10% Similarity=0.080 Sum_probs=125.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
|||+|||+|.||.+||..|+++|++|++||++++.++...+ .|..... ...++ +.+.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~~----------s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGVA----------NLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcccC----------CHHHHHhhcCC
Confidence 48999999999999999999999999999999988766432 2211100 00111 23567
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhc-CCCeeeeccccCcCC--CCCeEEEEeCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH--VMPLLEIVRTN 301 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~-~~~r~ig~hf~~P~~--~~~lveiv~~~ 301 (496)
+|+||.|+|.+ .-.+++.++.+.++++.+|++.+++. ...++.+.+. ...+|+..+...++. ...+ .++.+
T Consensus 60 ~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~-~~~~g- 135 (298)
T TIGR00872 60 PRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGY-CFMIG- 135 (298)
T ss_pred CCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-eeeeC-
Confidence 99999999987 45677888988888888887655543 3334444442 223444443332111 1123 33333
Q ss_pred CCCHHHHHHHHHHHHHcCC---ceEEecCc-ccc---hhhchH-HH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 010966 302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMF-FP---YTQAAFLLVER-G--TDLYLIDRAIT 362 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~nril-~~---~~~ea~~l~~~-g--~~~~~ID~a~~ 362 (496)
.+++.++.+.++++.++. ..+++++. .|. ++++.+ .. .+.|++.+++. | ++++++-++|+
T Consensus 136 -G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 136 -GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred -CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 378999999999999986 46777752 332 344444 33 35788888875 4 59999999987
No 50
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.45 E-value=2e-12 Score=135.07 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=130.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcceecccCc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY 221 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~ 221 (496)
|||+|||+|.||.++|..|+.+|++|++||++++.++...+... .+.+...+.. .++++.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~----------~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS----------PIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC----------CCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 48999999999999999999999999999999998776432100 0000011111 1346666776
Q ss_pred c-cccCCCEEEEeccCChH--------HHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhh-cC--CCe-eeecc-
Q 010966 222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERT-YS--KDR-IVGAH- 284 (496)
Q Consensus 222 ~-~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~-~~--~~r-~ig~h- 284 (496)
+ .+++||+||.|||.... ....+...+.+.++++++++. +||+++ .++...+ .. ..+ ....+
T Consensus 71 ~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 5 58899999999997642 345566778888888887764 445533 3443222 11 000 11111
Q ss_pred ccCcCCCCC--e-------EEEEeCCCCCHHHHHHHHHHHHHcC-CceEEecCc-cc---chhhchH----HHHHHHHHH
Q 010966 285 FFSPAHVMP--L-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAFL 346 (496)
Q Consensus 285 f~~P~~~~~--l-------veiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d~-~G---~i~nril----~~~~~ea~~ 346 (496)
-++|....+ + -.++.+ .+++..+.+.++++.++ +.++++++. .+ -++++++ ..+++|++.
T Consensus 150 ~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~ 227 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELAR 227 (411)
T ss_pred EECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113432211 1 134555 48999999999999998 577777652 22 2456665 356899998
Q ss_pred HHH-cCCCHHHHHHHHH
Q 010966 347 LVE-RGTDLYLIDRAIT 362 (496)
Q Consensus 347 l~~-~g~~~~~ID~a~~ 362 (496)
+.+ .|++++++-+++.
T Consensus 228 la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 228 ICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHhCCCHHHHHHHhC
Confidence 875 6999999988886
No 51
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.44 E-value=4.1e-12 Score=127.56 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=115.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (496)
.+++|+|||+|.||.++|..|...|+ +|++||++++.++.+. +.|... ....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence 35799999999999999999999995 8999999998766542 123110 112233 4
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCCC---------
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV--------- 291 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~~--------- 291 (496)
.+++||+||.|+|.. ....++.++.+.++++++|++.+|.. .+..+...+....+|++.||+.+.+.
T Consensus 63 ~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 578999999999864 34677888888888888876554432 23344444444558999999975321
Q ss_pred ---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 292 ---~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
...+.+++...++++.++.+.++++.+|..++.+.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 23345777778899999999999999999998886
No 52
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.43 E-value=9.4e-12 Score=124.56 Aligned_cols=183 Identities=19% Similarity=0.150 Sum_probs=125.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c--
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F-- 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-- 224 (496)
++|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ...++.++ +
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~ 56 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAK 56 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhh
Confidence 3899999999999999999999999999999998876532 1221 12223322 2
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeecccc-CcCCCC------Ce
Q 010966 225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFF-SPAHVM------PL 294 (496)
Q Consensus 225 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~-~P~~~~------~l 294 (496)
.++|+||.++|.+..+ .+++..+.+.++++.++++.+++.+ ..++++.+... |.+|. .|+... .+
T Consensus 57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~ 131 (301)
T PRK09599 57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGY 131 (301)
T ss_pred cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCC
Confidence 2479999999976444 4566778788888887765443333 33455554322 45554 243321 23
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCC----ceEEecCc-ccc---hhhchHH-H---HHHHHHHHHH---cCCCHHHHHH
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNRMFF-P---YTQAAFLLVE---RGTDLYLIDR 359 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk----~~v~v~d~-~G~---i~nril~-~---~~~ea~~l~~---~g~~~~~ID~ 359 (496)
.++.+ .++++++.++++++.+++ ..+++++. .|. ++|+.+. . .+.|++.+.+ .|++++++-+
T Consensus 132 -~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 132 -CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAE 208 (301)
T ss_pred -eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34444 488999999999999998 78888862 333 4455443 3 2578888875 5789999999
Q ss_pred HHH
Q 010966 360 AIT 362 (496)
Q Consensus 360 a~~ 362 (496)
+|.
T Consensus 209 ~~~ 211 (301)
T PRK09599 209 VWR 211 (301)
T ss_pred HHh
Confidence 998
No 53
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.43 E-value=3.3e-14 Score=148.33 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=119.8
Q ss_pred eEEEEEeCChhhHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
.||+|||+|.||.+.+. .+ +.+|++|++||++++.++.....+.+.+. ... ...++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCH
Confidence 38999999999998665 23 45688999999999998876655543332 111 11467778885
Q ss_pred -ccccCCCEEEEecc----------CChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcC--CCeeeeccccCc
Q 010966 222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP 288 (496)
Q Consensus 222 -~~~~~aDlVIeav~----------e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~--~~r~ig~hf~~P 288 (496)
+++++||+||++++ |+..+|..+++++.+.+++++++.+++|...+.+++..+.. | +.+.+||+||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 67899999999998 35889999999999999999999999999999999998863 7 8999999999
Q ss_pred CCCC-----CeE--EEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010966 289 AHVM-----PLL--EIVRTNQTSPQVIVDLLDIGKKIKKTP 322 (496)
Q Consensus 289 ~~~~-----~lv--eiv~~~~t~~e~~~~~~~l~~~lGk~~ 322 (496)
+..+ +.. -++.. ..........+.+.+|..+
T Consensus 148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCCH
Confidence 8654 222 23322 2225555666777777643
No 54
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.42 E-value=2.9e-12 Score=123.79 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=124.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-c
Q 010966 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-Y 221 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~ 221 (496)
++||+|||+|+||.+|+..|.++| .+|++.+++++..+...++ -| ..+ +++ .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------~g------------~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------YG------------VVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------cC------------Ccc-cCcHH
Confidence 368999999999999999999999 5899999999987643221 11 112 333 3
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE-eC
Q 010966 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RT 300 (496)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~~ 300 (496)
+.+..+|+||.||. +....+++.++.. ..++.+|+|...+++++.|...++ ..+++..+|+.|......+..+ .+
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 56788999999994 5567788888887 778999999999999999999998 7789999999998877766655 66
Q ss_pred CCCCHHHHHHHHHHHHHcCCceEEe
Q 010966 301 NQTSPQVIVDLLDIGKKIKKTPIVV 325 (496)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~v~v 325 (496)
...+++..+.+.++++.+|+...+-
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEec
Confidence 8899999999999999999866554
No 55
>PLN02256 arogenate dehydrogenase
Probab=99.42 E-value=5.7e-12 Score=125.66 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=111.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c-
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (496)
.++|+|||+|.||+++|..+.+.|++|+++|+++.. +.+. +.|. ...++.++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 468999999999999999999999999999998632 1111 1121 12233333 3
Q ss_pred cCCCEEEEeccCChHHHHHHHHHH-HhhCCCCeeEeccCCc--ccHHHHHhhhcCCCeeeeccccCcCCCC------CeE
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS~--~~~~~la~~~~~~~r~ig~hf~~P~~~~------~lv 295 (496)
.++|+||.|+|.. ...+++.++ ...++++++|++.+|+ .+++.+...++...+|+|.||+.++... .-+
T Consensus 91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 4699999999854 456777887 5667899999988884 5567777776555689999999876532 111
Q ss_pred EEEeC----CCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 296 eiv~~----~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
-+.+. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 12221 56788999999999999999999985
No 56
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.41 E-value=9.8e-12 Score=124.28 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=124.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc-
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (496)
++|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. +...+.++ ++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 56 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSK 56 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHh
Confidence 3799999999999999999999999999999998766532 1221 12333333 33
Q ss_pred --CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccC-cCCCC------Ce
Q 010966 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFS-PAHVM------PL 294 (496)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~-P~~~~------~l 294 (496)
.+|+||.|+|.+..+ .+++..+.+.++++.+++..+++- ...++++.+... |.+|.. |+... ..
T Consensus 57 ~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~ 131 (299)
T PRK12490 57 LEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGY 131 (299)
T ss_pred CCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCC
Confidence 379999999987544 456677877777887776443322 334555555321 445543 33321 22
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCC---ceEEecCc-ccc---hhhchHHH----HHHHHHHHHH-cC--CCHHHHHHH
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RG--TDLYLIDRA 360 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d~-~G~---i~nril~~----~~~ea~~l~~-~g--~~~~~ID~a 360 (496)
. ++.+ .++++++.++++++.+|. ..+++++. .|. ++|+++.. .+.|++.+.+ .| ++++++-++
T Consensus 132 ~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 132 C-LMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred e-EEec--CCHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 3 3333 378899999999999997 67888762 222 55665543 3689999886 56 799998888
Q ss_pred HH
Q 010966 361 IT 362 (496)
Q Consensus 361 ~~ 362 (496)
|.
T Consensus 209 ~~ 210 (299)
T PRK12490 209 WR 210 (299)
T ss_pred Hc
Confidence 87
No 57
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.40 E-value=1.5e-11 Score=121.51 Aligned_cols=153 Identities=15% Similarity=0.082 Sum_probs=118.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
|++|+|||+|.||.+|+..|.++| ++|++|+++++. ++... .. ......+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DK-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HH-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987532 22211 00 0112223343
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEE-e
Q 010966 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R 299 (496)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv-~ 299 (496)
+.++++|+||.|+|. ..-.+++.++.++++++++|+|.+.++++++|.+.++. .+++.++|+.|+.....+..+ .
T Consensus 59 ~e~~~~aDvVilavpp--~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVPP--LAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 346899999999984 34567888888888888889999999999999998753 489999999998877666655 6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCceEE
Q 010966 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (496)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~ 324 (496)
++..+++..+.+..+|+.+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6778999999999999999987654
No 58
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.40 E-value=2.1e-11 Score=127.05 Aligned_cols=198 Identities=14% Similarity=0.177 Sum_probs=127.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhh------hcceecc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKT------ISLLTGV 218 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~------~~~i~~~ 218 (496)
++||+|||+|.||.++|..|+.+|++|++||++++.++... .|.+. +...+.. .+++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~------------~g~~~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN------------RGEIHIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH------------CCCCCcCCCCHHHHHHHHhhcCceeee
Confidence 57999999999999999999999999999999999877632 12111 0011111 1234444
Q ss_pred cCcccccCCCEEEEeccCC--------hHHHHHHHHHHHhhCCCCeeEeccCCccc---HHHHHhhhcCC-Ce--e--e-
Q 010966 219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYSK-DR--I--V- 281 (496)
Q Consensus 219 ~~~~~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~il~sntS~~~---~~~la~~~~~~-~r--~--i- 281 (496)
++ +++||+||.|||.. ......+.+.+.++++++++++.. ||.+ ..++...+... .. + -
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 43 45899999999974 244456678888889998877643 3333 33444333210 00 0 0
Q ss_pred --ecc---ccCcC--CCCCeE-------EEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc-ccc---hhhchHH----H
Q 010966 282 --GAH---FFSPA--HVMPLL-------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFF----P 339 (496)
Q Consensus 282 --g~h---f~~P~--~~~~lv-------eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~G~---i~nril~----~ 339 (496)
+.. -++|- ..+..+ -++.+ .+++..+.+.++++.++..++++++. .+. ++++.+. +
T Consensus 147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia 224 (415)
T PRK11064 147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA 224 (415)
T ss_pred cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 001 13452 111111 34544 47899999999999999877777652 222 4565554 4
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 010966 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (496)
Q Consensus 340 ~~~ea~~l~~-~g~~~~~ID~a~~ 362 (496)
++||++.+.+ .|+|+.++-+++.
T Consensus 225 ~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 225 FANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Confidence 5799988875 6999999988775
No 59
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.38 E-value=5.2e-13 Score=147.85 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=82.9
Q ss_pred CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCcccc
Q 010966 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (496)
Q Consensus 327 d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~ 400 (496)
..+||++||++.++++||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~ 692 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC 692 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence 36899999999999999999999996 9999999999 999997 99999999999999999999999999988899
Q ss_pred chHHHHHhcCCCccccCceee
Q 010966 401 MIIPIMQEDKRAGETTRKGFY 421 (496)
Q Consensus 401 ~~l~~~~~~G~lG~k~g~GFY 421 (496)
+++.+|+++| ++||
T Consensus 693 ~~l~~~~~~~-------~~f~ 706 (708)
T PRK11154 693 ERLVEMAERG-------ESFY 706 (708)
T ss_pred HHHHHHHHcC-------CCCC
Confidence 9999999986 7786
No 60
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.38 E-value=2.8e-11 Score=122.39 Aligned_cols=205 Identities=16% Similarity=0.097 Sum_probs=135.1
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccCCCEEEEeccCC
Q 010966 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (496)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~ 237 (496)
|.+||..|+.+||+|++||++++.++... .+.....| ++.+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999998654311 11111222 2333343 5578999999999976
Q ss_pred hHHHHHHHHHHHhhCCCCeeEeccCCcccHH----HHHhhhcCCCeeeeccccCcCCC----CCeEEEEeCC------CC
Q 010966 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (496)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~----~la~~~~~~~r~ig~hf~~P~~~----~~lveiv~~~------~t 303 (496)
. ..++++..+.+.++++++|++ +|+.+.. .+...+..+.+.+|.||+.|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 456788889999999988774 4555444 34455554556778888876542 2234455443 34
Q ss_pred CHHHHHHHHHHHHHcCCceEEecCcccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcCCCcchhHhh
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFGMPMGPFRLA 374 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d~~G~---i~nril~~~----~~ea~~l~~-~g~~~~~ID~a~~-~~g~p~GPf~l~ 374 (496)
+++.++.+.++++.+|+.+++++...|. .+|+++.+. ..|++.+.+ .|.+|.+.-+-+. .. -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 8999999999999999999888753333 356666554 577777765 4556655444332 21 12566666
Q ss_pred hccCchhHHHhh
Q 010966 375 DLVGFGVAIATG 386 (496)
Q Consensus 375 D~~Gld~~~~~~ 386 (496)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 667777666544
No 61
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.38 E-value=5.9e-13 Score=147.09 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=82.4
Q ss_pred CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCcccc
Q 010966 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (496)
Q Consensus 327 d~~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~ 400 (496)
..+||++||++.++++||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~ 685 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC 685 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence 36899999999999999999999996 9999999999 999995 99999999999999999999999999988899
Q ss_pred chHHHHHhcCCCccccCceee
Q 010966 401 MIIPIMQEDKRAGETTRKGFY 421 (496)
Q Consensus 401 ~~l~~~~~~G~lG~k~g~GFY 421 (496)
+++.+|+++| +.||
T Consensus 686 ~~L~~~~~~~-------~~f~ 699 (699)
T TIGR02440 686 QRLVAMAAEK-------QSFY 699 (699)
T ss_pred HHHHHHHHcC-------CCcC
Confidence 9999999986 6686
No 62
>PRK07680 late competence protein ComER; Validated
Probab=99.37 E-value=3.8e-11 Score=118.54 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=110.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (496)
++|+|||+|.||.+|+..|.++|+ +|+++|++++..+...++ . ..+..+.+. +
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~ 58 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEE 58 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHH
Confidence 379999999999999999999984 799999999876543210 0 012233343 3
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCe-EEEEeCC
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTN 301 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~l-veiv~~~ 301 (496)
.+.++|+||.|++. ..-.++++++.+++.++++|+|.+++++++.+...++ .+.+..+|..|...... .-++.++
T Consensus 59 ~~~~aDiVilav~p--~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~ 134 (273)
T PRK07680 59 VISQSDLIFICVKP--LDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGS 134 (273)
T ss_pred HHHhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCC
Confidence 47899999999973 3456788888888888888889899999999988765 34566666555322222 2344566
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEec
Q 010966 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
..+++..+.+.+++..+|. ++.+.
T Consensus 135 ~~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 135 RCSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCCHHHHHHHHHHHHcCCC-EEEEC
Confidence 6788889999999999995 55554
No 63
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.35 E-value=4e-11 Score=121.27 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=121.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcceecccCcc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-SF 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~ 224 (496)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+. +..... .-......+..+++.+ .+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD-----------RENPRYLPGIKLPDNLRATTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccCCCCcCCCCeEEeCCHHHHH
Confidence 4689999999999999999999999999999999877654321 100000 0000011234445553 56
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-------HHHhhhcCCCeeeeccccCcCC------C
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFFSPAH------V 291 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-------~la~~~~~~~r~ig~hf~~P~~------~ 291 (496)
++||+||.|+|.. ....++.++.+.+++++++++.+++++.. .+.+........ .....|.. .
T Consensus 70 ~~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g 145 (325)
T PRK00094 70 ADADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARG 145 (325)
T ss_pred hCCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcC
Confidence 8999999999974 46788888988888899888776555542 222222210010 11112332 1
Q ss_pred C-CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc---------------------hhhchHH----HHHHHHH
Q 010966 292 M-PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF---------------------AVNRMFF----PYTQAAF 345 (496)
Q Consensus 292 ~-~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~---------------------i~nril~----~~~~ea~ 345 (496)
. .++.+ .+ .+.+.++.+.++++..|..+....|..|. +.++.+. ..++|++
T Consensus 146 ~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~ 222 (325)
T PRK00094 146 LPTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEIT 222 (325)
T ss_pred CCcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 1 22333 32 37888999999999999877776654331 2233332 2357777
Q ss_pred HHHH-cCCCHHHHHHH
Q 010966 346 LLVE-RGTDLYLIDRA 360 (496)
Q Consensus 346 ~l~~-~g~~~~~ID~a 360 (496)
.+.+ .|++++.+...
T Consensus 223 ~la~~~G~d~~~~~~~ 238 (325)
T PRK00094 223 RLGVALGANPETFLGL 238 (325)
T ss_pred HHHHHhCCChhhhhcc
Confidence 7654 67777666544
No 64
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.35 E-value=1.5e-11 Score=126.76 Aligned_cols=199 Identities=17% Similarity=0.238 Sum_probs=120.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
|||+|||+|.||.++|..++. ||+|++||+++++++...+.+...++..++. .......+++.+++. +.+++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRD 73 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcC
Confidence 489999999999999988874 9999999999999887654322111111110 000012345555554 45789
Q ss_pred CCEEEEeccCChHHH---------HHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeeeccccCcCCCC--
Q 010966 227 VDMVIEAIIENVSLK---------QQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFSPAHVM-- 292 (496)
Q Consensus 227 aDlVIeav~e~~~~k---------~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig~hf~~P~~~~-- 292 (496)
||+||+|||++.+.| .++++.+.+ ++++.+++. .||+++ +++...+.. .++.| +|....
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~~----~~v~~-~PE~l~~G 146 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYRT----ENIIF-SPEFLREG 146 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhhc----CcEEE-CcccccCC
Confidence 999999999874433 345566766 577776653 444443 355544321 13333 554322
Q ss_pred CeE-------EEEeCCCCCHHHHHHHHHHHHH--cCC-ceEEecCc-ccc---hhhchHH----HHHHHHHHHHH-cCCC
Q 010966 293 PLL-------EIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTD 353 (496)
Q Consensus 293 ~lv-------eiv~~~~t~~e~~~~~~~l~~~--lGk-~~v~v~d~-~G~---i~nril~----~~~~ea~~l~~-~g~~ 353 (496)
.++ -++.|. +++..+.+.+++.. ++. .++++.+. .+. ++++++. +++||...+.+ .|+|
T Consensus 147 ~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD 224 (388)
T PRK15057 147 KALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLN 224 (388)
T ss_pred cccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 110 133332 34566777777754 554 34345542 232 4555554 45799988865 6999
Q ss_pred HHHHHHHHH
Q 010966 354 LYLIDRAIT 362 (496)
Q Consensus 354 ~~~ID~a~~ 362 (496)
++++-+++.
T Consensus 225 ~~eV~~a~~ 233 (388)
T PRK15057 225 TRQIIEGVC 233 (388)
T ss_pred HHHHHHHhc
Confidence 999999884
No 65
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.35 E-value=3e-11 Score=120.67 Aligned_cols=184 Identities=17% Similarity=0.115 Sum_probs=127.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++|+|||.|.||.++|..|..+|++|++++++.+...... .+.| +...+..+.++.|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence 6899999999999999999999999999988754332211 1112 1122223557899
Q ss_pred CEEEEeccCChHHHHHHH-HHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC-------CCCeEE-EE
Q 010966 228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLLE-IV 298 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~-------~~~lve-iv 298 (496)
|+|+.++|.... ..++ +++.+.++++++| +-.+++++..+....+...+++.++|..|.+ .+..+. ++
T Consensus 75 DVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 999999996543 6777 7798899999988 7888999988766655556789999999987 333333 33
Q ss_pred -eCCCCCHHHHHHHHHHHHHcCCceE-----EecC-c-ccchh-hchH----HHHHHHHHHH-HHcCCCHHHH
Q 010966 299 -RTNQTSPQVIVDLLDIGKKIKKTPI-----VVGN-C-TGFAV-NRMF----FPYTQAAFLL-VERGTDLYLI 357 (496)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~~v-----~v~d-~-~G~i~-nril----~~~~~ea~~l-~~~g~~~~~I 357 (496)
.+...+.+..+.+..++..+|..+. .+++ . ...+. .-++ ..++..++.. ++.|.+|+..
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4555678899999999999998876 3432 1 11111 1222 2345555554 5678877653
No 66
>PLN02858 fructose-bisphosphate aldolase
Probab=99.35 E-value=2.6e-11 Score=141.89 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=133.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||+|.||.+||.+|+++||+|++||+++++.+... +.|. ...++. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGG-------------HRCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhc
Confidence 5899999999999999999999999999999998877643 2232 122333 45678
Q ss_pred CCEEEEeccCChHHHHHHH--HHHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeee--cccc-CcCCC-------
Q 010966 227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAHV------- 291 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig--~hf~-~P~~~------- 291 (496)
||+||.|+|++..++..++ ..+.+.+.++.+++. +||++++ ++++.+... | .+|. .|+..
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~~ 135 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLLN 135 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHhc
Confidence 9999999999887765554 346666778877754 3455443 555555322 3 4454 34432
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEe-cC-cccc---hhhchHHH----HHHHHHHHH-HcCCCHHHHHHHH
Q 010966 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTGF---AVNRMFFP----YTQAAFLLV-ERGTDLYLIDRAI 361 (496)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v-~d-~~G~---i~nril~~----~~~ea~~l~-~~g~~~~~ID~a~ 361 (496)
+.|+-++.| +++.++.+.++++.+|+..+++ ++ +.|. ++|+++.. .+.||+.+. ..|++++.+-+++
T Consensus 136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl 212 (1378)
T PLN02858 136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII 212 (1378)
T ss_pred CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 455556565 7889999999999999988765 54 3343 66777654 368898886 4799999999999
Q ss_pred H-hcC
Q 010966 362 T-KFG 365 (496)
Q Consensus 362 ~-~~g 365 (496)
. +.|
T Consensus 213 ~~s~g 217 (1378)
T PLN02858 213 SNAAG 217 (1378)
T ss_pred hcCCc
Confidence 8 654
No 67
>PLN02858 fructose-bisphosphate aldolase
Probab=99.34 E-value=3.7e-11 Score=140.64 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=132.1
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
.+++|+|||+|.||.+||..|+.+|++|++||+++++.+... +.|.. ...+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHHH
Confidence 458999999999999999999999999999999998876532 22311 12233 457
Q ss_pred cCCCEEEEeccCChHHHHHHHH--HHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeecccc-CcCCC-------
Q 010966 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV------- 291 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~hf~-~P~~~------- 291 (496)
++||+||.|||...+++..++. .+.+.+.++.+++. +||+++. ++++.+.. .-.|.+|. .|+..
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999987766655543 35556677777663 3444443 55555432 01356665 34432
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc--c---hhhchHHH----HHHHHHHHH-HcCCCHHHHHHHH
Q 010966 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLV-ERGTDLYLIDRAI 361 (496)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G--~---i~nril~~----~~~ea~~l~-~~g~~~~~ID~a~ 361 (496)
..+.-++.| +++.++.+.++++.+|+..+++...+| . ++|+++.. .+.|++.+. ..|++++.+-+++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555555 678999999999999998877543234 2 66777654 368888876 4799999998888
Q ss_pred H-hcC
Q 010966 362 T-KFG 365 (496)
Q Consensus 362 ~-~~g 365 (496)
. +.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 7 544
No 68
>PLN02888 enoyl-CoA hydratase
Probab=99.31 E-value=8e-12 Score=122.62 Aligned_cols=100 Identities=25% Similarity=0.293 Sum_probs=87.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++.+.+.++|++++..+ |.
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 207 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-QG---------------------------------- 207 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999863 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhhcCCCCCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVPG 136 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~--~s~~a~~~i~aF~~kr~~~~~~~ 136 (496)
+...+|++++.....++++++..|...+..++ .++++++++++|++||+++|.++
T Consensus 208 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 264 (265)
T PLN02888 208 -MVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK 264 (265)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 33478899988888889999999988888875 59999999999999999988654
No 69
>PLN02600 enoyl-CoA hydratase
Probab=99.30 E-value=7.3e-12 Score=121.98 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=86.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-p~---------------------------------- 196 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG-PL---------------------------------- 196 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+.++.|...+..++.++++++++++|++||+++
T Consensus 197 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 247 (251)
T PLN02600 197 -AIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV 247 (251)
T ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 334788999888888899999999999999999999999999999998754
No 70
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.30 E-value=1.3e-10 Score=113.82 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=122.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
+||+|||+|.||.+|+..|.++|++ |.++|++++..+...+. . .....+.+. +.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~------------~~~~~~~~~~~~ 58 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------F------------PKVRIAKDNQAV 58 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------c------------CCceEeCCHHHH
Confidence 3799999999999999999999864 58999998876553211 0 011223344 34
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCCCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (496)
+++||+||.|+|. +...+++.++. +.++.+++|..++++++.+...++...+.+..||+.|......+..+..
T Consensus 59 ~~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~--- 131 (258)
T PRK06476 59 VDRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP--- 131 (258)
T ss_pred HHhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---
Confidence 6789999999983 34466776662 4677888888899999999998866567888888877664444444422
Q ss_pred CHHHHHHHHHHHHHcCCceEEecC--cccc-----hhhchHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~d--~~G~-----i~nril~~~~~ea~~l-~~~g~~~~~ID~a~~ 362 (496)
+ .+.+.++++.+|..+.+..+ .+-+ ..-.++ .++.++..+ ...|+++++..+++.
T Consensus 132 ~---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~~-~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 132 P---DPFVAALFDALGTAVECDSEEEYDLLAAASALMATYF-GILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred C---HHHHHHHHHhcCCcEEECChHhccceeehhccHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 25789999999988774422 1111 111111 234455444 467899888777765
No 71
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.29 E-value=7.8e-11 Score=123.91 Aligned_cols=186 Identities=16% Similarity=0.168 Sum_probs=125.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc----cc
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----SF 224 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~ 224 (496)
+|+|||+|.||.+||..|+++|++|++||++++..+...+. ...|. .+....+.+ .+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999987764321 00010 011222322 34
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH--HHHhhhcCCCeeeecccc-CcCCC-------CCe
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPL 294 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~--~la~~~~~~~r~ig~hf~-~P~~~-------~~l 294 (496)
+.+|+||.+||....+ .+++.++.+++.++.||+..+++.+.+ +..+.+.. -|.||+ .|+.. ++
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~G~- 135 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARKGP- 135 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhcCC-
Confidence 5799999999986554 567788888888888887665544332 33444421 245554 24332 23
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCce------EEecC-cccc---hhhc-hHHHH---HHHHHHHHH--cCCCHHHHH
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF---AVNR-MFFPY---TQAAFLLVE--RGTDLYLID 358 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~------v~v~d-~~G~---i~nr-il~~~---~~ea~~l~~--~g~~~~~ID 358 (496)
.++.+ .++++++.++++++.++... .++++ +.|. ++|+ +...+ +.|++.++. .|++++++-
T Consensus 136 -~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 136 -SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred -cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444 48899999999999999763 66765 3343 3444 44433 689999873 788999988
Q ss_pred HHHH
Q 010966 359 RAIT 362 (496)
Q Consensus 359 ~a~~ 362 (496)
.++.
T Consensus 213 ~v~~ 216 (467)
T TIGR00873 213 EVFT 216 (467)
T ss_pred HHHH
Confidence 8884
No 72
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.29 E-value=3.8e-11 Score=122.12 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=102.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-cccc
Q 010966 148 KKVAILGG-GLMGSGIATALIL-SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (496)
++|+|||. |.||+++|..|.. .|++|+.+|++.+. ..+ .+.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 9999999999986 48999999985210 112 2347
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhh---CCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCCC-----CCe
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPL 294 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~---~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~~-----~~l 294 (496)
++||+||.|+|.. ...++++++.++ ++++++|+..+|+.. ++.+ .....+|+|.||+..++. ...
T Consensus 50 ~~aDlVilavPv~--~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAPIR--HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCCHH--HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 8999999999955 456788888876 689999998888763 2333 223346999999986653 233
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+-+++. ..++.++.+.++++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 345554 445567889999999999998885
No 73
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=6.3e-12 Score=125.28 Aligned_cols=96 Identities=14% Similarity=0.048 Sum_probs=84.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||+++|++++.++|++++..+ |.
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p~---------------------------------- 217 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIP-LS---------------------------------- 217 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5899999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~-~~~~~~l~~E~~~~~~l~~s~~a~--------~~i~aF~~kr~~~ 132 (496)
+...+|++++.... .+++++++.|...+..++.|++++ +++.+|++||+++
T Consensus 218 -a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~ 277 (298)
T PRK12478 218 -QLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGP 277 (298)
T ss_pred -HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 33478888888766 469999999999999999999997 5999999999864
No 74
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.29 E-value=4.4e-11 Score=119.55 Aligned_cols=204 Identities=16% Similarity=0.100 Sum_probs=137.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|+|||+|.||.++|..|..+|++|+++++. ++..+.+. +.| +..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 58999999999999999999999998876654 33333321 112 112233345789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCC-------CCeE-EEE
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV 298 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~-------~~lv-eiv 298 (496)
||+||.++|.+.. ...+.+++.+.++++. ++|...++++..+...++...+++.+.|+.|.+. +..+ -++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999996533 4466677888888776 6678889999998877765568999999999973 5444 343
Q ss_pred -eCCCCCHHHHHHHHHHHHHcCCc-------eE--Eec-Ccccc--hhhchHHHHHHHHH-HHHHcCCCHHHHHHHHH-h
Q 010966 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYTQAAF-LLVERGTDLYLIDRAIT-K 363 (496)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--~v~-d~~G~--i~nril~~~~~ea~-~l~~~g~~~~~ID~a~~-~ 363 (496)
.+...+.+..+.+..++..+|.. .. .+. |--+. .+.-..-+++...+ .+++.|.+++.--.... .
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE 217 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 67778899999999999999988 21 221 11111 11112223332222 23788998877655543 2
Q ss_pred cCCCcchhHhhhccCch
Q 010966 364 FGMPMGPFRLADLVGFG 380 (496)
Q Consensus 364 ~g~p~GPf~l~D~~Gld 380 (496)
+ .|--.++-.-|+.
T Consensus 218 ~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 218 L---KLIVDLIYEGGIT 231 (314)
T ss_pred H---HHHHHHHHHhcHH
Confidence 2 4666666666764
No 75
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=1.1e-11 Score=120.99 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=86.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |.
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 200 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-PL---------------------------------- 200 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~ 133 (496)
+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++.
T Consensus 201 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 252 (255)
T PRK08150 201 -TNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKV 252 (255)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 2346888888887788999999999999999999999999999999987654
No 76
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.28 E-value=2.7e-10 Score=110.58 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=128.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
.+||+|||+|.||.+++..++++|+ + |+++++ +++.++...+. .+ +..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 3689999999999999999998873 3 777887 46655443211 01 1223444
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEe
Q 010966 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR 299 (496)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~ 299 (496)
+.++++|+||.|+|.. .-.++++++.++++ +.+|+|.+.+++++.|...++...+++..||+.|......+. ++.
T Consensus 61 ~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 3468999999999865 34678888877665 568889999999999999886656788899987765543333 345
Q ss_pred CCCCCHHHHHHHHHHHHHcCCceEEecCcccchh---hch---HHHHHHHHH-H-HHHcCCCHHHHHHHHH
Q 010966 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV---NRM---FFPYTQAAF-L-LVERGTDLYLIDRAIT 362 (496)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~---nri---l~~~~~ea~-~-l~~~g~~~~~ID~a~~ 362 (496)
....+++..+.+.+++..+|..+.+ .+..-..+ .-. +..++.+++ . .+..|++.++-.+++.
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6667899999999999999998864 43111111 111 111233333 2 3457888888666665
No 77
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=9.1e-12 Score=121.78 Aligned_cols=96 Identities=24% Similarity=0.259 Sum_probs=86.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|+++++++|.+++++++..+ |.
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 202 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS-LP---------------------------------- 202 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999998752 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+++..|.+.+..++.|+++++++++|++||+++
T Consensus 203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~ 253 (257)
T PRK05862 203 -AVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV 253 (257)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 345789999988888999999999999999999999999999999988754
No 78
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.27 E-value=1.4e-11 Score=123.97 Aligned_cols=126 Identities=21% Similarity=0.401 Sum_probs=96.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
.+||+|||+|.||.++|..++..|+ +|+++|++++.+..-. ++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 9999999998753211 1111110 0111223677778899999
Q ss_pred CCCEEEEec-------------------cCChHHHHHHHHHHHhhCCCC-eeEeccCCcccHHHHHhhhcCC-Ceeeecc
Q 010966 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (496)
Q Consensus 226 ~aDlVIeav-------------------~e~~~~k~~v~~~l~~~~~~~-~il~sntS~~~~~~la~~~~~~-~r~ig~h 284 (496)
+||+||+++ .++..++++++.++.+++++. .|++||++.+....+....+.| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 567888999999999999774 5678999988888887777665 8899986
No 79
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=1.1e-11 Score=121.47 Aligned_cols=96 Identities=27% Similarity=0.413 Sum_probs=85.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~---------------------------------- 208 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-PV---------------------------------- 208 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++++..|...+..++.++++++++.+|++||+++
T Consensus 209 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 209 -AVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 334788899888888899999999999999999999999999999998754
No 80
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.27 E-value=1.2e-11 Score=120.91 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=86.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|+|++++++++.++|++++..+ |.
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 201 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-TR---------------------------------- 201 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999863 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.++++.|.+.+..++.|+++++++++|++||+++
T Consensus 202 -~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 252 (256)
T TIGR02280 202 -GLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ 252 (256)
T ss_pred -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence 234788999888888899999999999999999999999999999988765
No 81
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=9.4e-12 Score=121.01 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=84.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 199 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD-TR---------------------------------- 199 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~ 131 (496)
+...+|++++.....++++.++.|...+..++.++++++++++|++||++
T Consensus 200 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 200 -VIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 23478888888777788999999999999999999999999999999864
No 82
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=1.4e-11 Score=120.65 Aligned_cols=96 Identities=32% Similarity=0.331 Sum_probs=85.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 206 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMP-PL---------------------------------- 206 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999998752 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
++..+|++++.....++.+++..|.+.+..++.++++++++++|++||+++
T Consensus 207 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~ 257 (261)
T PRK08138 207 -ALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA 257 (261)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 344788999888888899999999999999999999999999999998755
No 83
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=1.6e-11 Score=120.02 Aligned_cols=96 Identities=31% Similarity=0.469 Sum_probs=85.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|++||++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 202 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-PA---------------------------------- 202 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999998862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
++..+|++++.....+++++++.|...+..++.++++++++++|++||+++
T Consensus 203 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 253 (257)
T PRK07658 203 -TTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS 253 (257)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 344788899888778899999999999999999999999999999988755
No 84
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.27 E-value=1.5e-11 Score=120.78 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=86.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++++.+++++++..+ |.
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 211 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS-PA---------------------------------- 211 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++.+..|.+.+..++.++++++++++|++||+++
T Consensus 212 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK08139 212 -AVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE 262 (266)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 234788999888888899999999999999999999999999999988655
No 85
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.26 E-value=9.9e-12 Score=117.56 Aligned_cols=97 Identities=24% Similarity=0.271 Sum_probs=87.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|++||++++|+||+++||||+|||.++++.+|.+|+++++..+ |.
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~~---------------------------------- 235 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-PL---------------------------------- 235 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5899999999999999999999999999999999999999973 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~ 133 (496)
+..+.|+.++.+...++.+++..|...|...+.+++.+|++.+|.+||+++.
T Consensus 236 -~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 236 -VVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred -HHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 2337889999999999999999999999999999999999999988887654
No 86
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.8e-11 Score=121.06 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=86.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++.+.++|++++..+ |.
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 222 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-TF---------------------------------- 222 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~ 133 (496)
+...+|++++.....++++.++.|...+..++.|+++++++++|++||+++.
T Consensus 223 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 223 -AHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 3347889998888888999999999999999999999999999999987653
No 87
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.25 E-value=2.7e-10 Score=118.81 Aligned_cols=199 Identities=15% Similarity=0.091 Sum_probs=124.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHh--hhcceecccCccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEK--TISLLTGVLDYES 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~--~~~~i~~~~~~~~ 223 (496)
+||+|||+|.||..+|..|+. ||+|++||+++++++... .|.. .+...+. ...++.++++.+.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~~g~l~~t~~~~~ 73 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELREARYLKFTSEIEK 73 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHhhCCeeEEeCHHH
Confidence 689999999999999999877 699999999999887743 2221 1111111 1235667777778
Q ss_pred ccCCCEEEEeccCCh------H--HHHHHHHHHHhhCCCCeeEeccCCcccH---HHHH-hhhcCC-Ceeeeccc---cC
Q 010966 224 FKDVDMVIEAIIENV------S--LKQQIFADLEKYCPPHCILASNTSTIDL---NLIG-ERTYSK-DRIVGAHF---FS 287 (496)
Q Consensus 224 ~~~aDlVIeav~e~~------~--~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la-~~~~~~-~r~ig~hf---~~ 287 (496)
+++||+||.|||... + ......+.|.++++++.+++. .||+++ .++. ..+... ..-.+-.| |+
T Consensus 74 ~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~ 152 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVGYS 152 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeC
Confidence 899999999999652 2 222233568888888887753 344443 2232 222110 00001111 23
Q ss_pred cCCCC---------CeEEEEeCCCCCHHHHHHHHHHHHHcC-CceEEecC-cccc---hhhchHH----HHHHHHHHHHH
Q 010966 288 PAHVM---------PLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE 349 (496)
Q Consensus 288 P~~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lG-k~~v~v~d-~~G~---i~nril~----~~~~ea~~l~~ 349 (496)
|.... .+--++.| .+++..+.+..+++.+. ..++++.+ ..+. ++|+++. +++||++.+.+
T Consensus 153 PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae 230 (425)
T PRK15182 153 PERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFN 230 (425)
T ss_pred CCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221 11225555 35778889999999875 34566654 2232 5666665 45799988875
Q ss_pred -cCCCHHHHHHHHH
Q 010966 350 -RGTDLYLIDRAIT 362 (496)
Q Consensus 350 -~g~~~~~ID~a~~ 362 (496)
.|+|+.++-+++.
T Consensus 231 ~~GiD~~~v~~a~~ 244 (425)
T PRK15182 231 RLNIDTEAVLRAAG 244 (425)
T ss_pred HhCcCHHHHHHHhc
Confidence 6999999888875
No 88
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.25 E-value=2.3e-10 Score=109.22 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=108.7
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
|||+||| +|.||++++..|+++|++|++++++++.++.........+ ...| +. ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~---~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEEL---GHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhc---cccC-CC--------ceEEEeChHHHHhc
Confidence 4899997 8999999999999999999999999988765432211100 0001 00 01222344466889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-----------------HHHHhhhcCCCeeeeccccCcC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-----------------~~la~~~~~~~r~ig~hf~~P~ 289 (496)
+|+||.|+|.. .-.+++.++.+.+.. ++|+|.+.+++. +.+++.++...+++....+.|.
T Consensus 69 aDvVilavp~~--~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPWD--HVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCHH--HHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 99999999854 345666777666654 777777666665 4455655433678887554432
Q ss_pred CC-------CCeEEEEeCCCCCHHHHHHHHHHHHHc-CCceEEecC
Q 010966 290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (496)
Q Consensus 290 ~~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~v~v~d 327 (496)
.. .+...++.++ +++..+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 21 1222345553 677889999999999 999998864
No 89
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=2.1e-11 Score=119.10 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=84.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |.
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 207 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG-PQ---------------------------------- 207 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~ 130 (496)
+...+|+.++.....++++++..|...+..++.++++++++++|++||+
T Consensus 208 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 208 -ALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 3347888888887888999999999999999999999999999999875
No 90
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=2.4e-11 Score=119.21 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=85.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~~---------------------------------- 207 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-TR---------------------------------- 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.++++.|...+..++.++++++++++|++||++.
T Consensus 208 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK08140 208 -GLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR 258 (262)
T ss_pred -HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 234788999888888899999999999999999999999999999998654
No 91
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.6e-11 Score=119.02 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=85.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~~---------------------------------- 208 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-PL---------------------------------- 208 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-hH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.++++.|.+.+..++.++++++++++|++||+++
T Consensus 209 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 259 (263)
T PRK07799 209 -AVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN 259 (263)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 334788999888888899999999999999999999999999999988654
No 92
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.4e-11 Score=118.81 Aligned_cols=96 Identities=25% Similarity=0.343 Sum_probs=85.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 203 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS-PS---------------------------------- 203 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999863 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+.+..|...+..++.++++++++++|++||+++
T Consensus 204 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 254 (258)
T PRK09076 204 -AVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ 254 (258)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 334788888887778899999999999999999999999999999988755
No 93
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.2e-11 Score=118.99 Aligned_cols=96 Identities=25% Similarity=0.325 Sum_probs=86.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~-~~---------------------------------- 202 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS-PL---------------------------------- 202 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.++++.|...+..++.|+++++++++|++||+++
T Consensus 203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~ 253 (257)
T PRK06495 203 -ATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV 253 (257)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence 234788888888788899999999999999999999999999999998765
No 94
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.6e-11 Score=118.34 Aligned_cols=96 Identities=22% Similarity=0.253 Sum_probs=85.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 199 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG-PL---------------------------------- 199 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+.++.|...+..++.++++++++.+|++||+++
T Consensus 200 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 250 (254)
T PRK08252 200 -AVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV 250 (254)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 234688888888777899999999999999999999999999999987654
No 95
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.23 E-value=3.6e-11 Score=117.45 Aligned_cols=96 Identities=25% Similarity=0.342 Sum_probs=85.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~~---------------------------------- 200 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-PL---------------------------------- 200 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|+.++.....++++.++.|.+.+..++.++++++++++|++||+++
T Consensus 201 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~ 251 (255)
T PRK09674 201 -ALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD 251 (255)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 334788888888888899999999999999999999999999999987654
No 96
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=3.4e-11 Score=118.53 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=85.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 214 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-PL---------------------------------- 214 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++.++.|...+..++.++++++++.+|++||+++
T Consensus 215 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 265 (269)
T PRK06127 215 -TLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV 265 (269)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 234788888888788899999999999999999999999999999998754
No 97
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.23 E-value=2.7e-11 Score=118.70 Aligned_cols=96 Identities=27% Similarity=0.436 Sum_probs=86.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|++||++++|+||+++||||+|+|++++++.+.+++++++..+ |.
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 205 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-PI---------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....+++++++.|.+.+..++.++++++++++|++||+++
T Consensus 206 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 256 (260)
T PRK05809 206 -AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN 256 (260)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 334788999888888899999999999999999999999999999988754
No 98
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=3.3e-11 Score=118.17 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=83.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++.+++.+++++++..+ |.
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~~---------------------------------- 207 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-PG---------------------------------- 207 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence 5899999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++......++..++.|...+..++.|+++++++++|++||+++
T Consensus 208 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 258 (262)
T PRK07468 208 -AVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA 258 (262)
T ss_pred -HHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 234688888876555678889999999999999999999999999998765
No 99
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.23 E-value=2.6e-11 Score=119.72 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=87.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 216 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-SA---------------------------------- 216 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence 5899999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~~ 135 (496)
+...+|++++.....+++++++.|.+.+..++.|+++++++++|++|.+.||..
T Consensus 217 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 217 -ARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 234788889888778899999999999999999999999999999998877743
No 100
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=2.9e-11 Score=118.14 Aligned_cols=96 Identities=27% Similarity=0.356 Sum_probs=85.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 200 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA-PL---------------------------------- 200 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence 5799999999999999999999999999999999999998762 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.++++.|...+..++.++++++++.+|++||+++
T Consensus 201 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 251 (255)
T PRK06563 201 -GVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR 251 (255)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 234688888887778899999999999999999999999999999998754
No 101
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.22 E-value=2.8e-11 Score=121.06 Aligned_cols=122 Identities=20% Similarity=0.355 Sum_probs=91.0
Q ss_pred EEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCC
Q 010966 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (496)
|+|||+|.||.++|..++..|+ +|+++|++++.++.....+... . .......+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~-------~-----~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA-------A-----PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh-------h-----hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999987543211111110 0 0111224677777888999999
Q ss_pred EEEEec--------------cCChHHHHHHHHHHHhhCCCCe-eEeccCCcccHHHHHhhhcC-CCeeeec
Q 010966 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (496)
Q Consensus 229 lVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~~~~~~la~~~~~-~~r~ig~ 283 (496)
+||+++ +++.++++++++++.++++++. |++||.+.+....+....+. |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 6788999999999999998777 46788887777777666654 4678776
No 102
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3.3e-11 Score=118.48 Aligned_cols=96 Identities=20% Similarity=0.156 Sum_probs=85.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++++.+++++++..+ |.
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~~---------------------------------- 211 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGP-TV---------------------------------- 211 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999998762 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+.++.|...+..++.|+++++++.+|++||+++
T Consensus 212 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 262 (266)
T PRK05981 212 -ALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ 262 (266)
T ss_pred -HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 234788888887778899999999999999999999999999999988765
No 103
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.21 E-value=3e-10 Score=127.48 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=117.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
++||+|||+|.||.+++..+..+| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 48999999998766532 223211 012233 34
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhc-CCCeeeeccccCcCC----------
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~-~~~r~ig~hf~~P~~---------- 290 (496)
++++|+||+|+|.+ ...++++++.++++++++|++.+|+. .++.+.+.+. .+.||++.||+....
T Consensus 61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 78999999999864 56788899998888888776555433 3566666553 357899999985221
Q ss_pred --CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
....+.++++..++++..+.+.++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567888888999999999999999999888885
No 104
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.21 E-value=4.1e-11 Score=118.31 Aligned_cols=96 Identities=24% Similarity=0.210 Sum_probs=84.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
|+|||++++|+||+++||||+|||+ +++.+++.++|++++..+ |.
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p~--------------------------------- 220 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-PL--------------------------------- 220 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-HH---------------------------------
Confidence 5799999999999999999999985 889999999999999862 32
Q ss_pred CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.++++.|...+..++.++++++++++|++||++.
T Consensus 221 --a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 271 (275)
T PLN02664 221 --AVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV 271 (275)
T ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 234788888887778899999999999999999999999999999998755
No 105
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=4.4e-11 Score=117.20 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=85.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 205 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG-PI---------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999998862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++++..|...+..++.|+++++++++|+++|+++
T Consensus 206 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~ 256 (260)
T PRK07657 206 -AVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM 256 (260)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 334788999888788899999999999999999999999999999988654
No 106
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.21 E-value=2e-11 Score=135.26 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=77.0
Q ss_pred ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (496)
Q Consensus 329 ~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~ 402 (496)
+..++||++.++++||++++++|+ +|+|||.+|+ |+|||+ |||+++|.+|+|+++++++.+. .+++++.|+++
T Consensus 624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~ 702 (715)
T PRK11730 624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEG 702 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHH
Confidence 456999999999999999999994 9999999999 999986 9999999999999999998764 57777888999
Q ss_pred HHHHHhcCCCccccCceee
Q 010966 403 IPIMQEDKRAGETTRKGFY 421 (496)
Q Consensus 403 l~~~~~~G~lG~k~g~GFY 421 (496)
+++|+++| ++||
T Consensus 703 L~~~v~~~-------~~f~ 714 (715)
T PRK11730 703 LREMAANG-------ESYY 714 (715)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999886 6787
No 107
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.21 E-value=2e-10 Score=112.48 Aligned_cols=145 Identities=19% Similarity=0.171 Sum_probs=110.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
+||+|||+|+||++|+..+.++|. +|+++|++++.. +. ....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence 489999999999999999998873 499999887531 00 011222334
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeE-EEEeCCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVRTNQ 302 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lv-eiv~~~~ 302 (496)
+++||+||.|++ +..-.+++.++.++++++ +++|..++++++.+...++...+++.+.|+.|......+ -+++...
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999997 445678889988877654 567888999999998887655567788888887665444 4557778
Q ss_pred CCHHHHHHHHHHHHHcCCceEE
Q 010966 303 TSPQVIVDLLDIGKKIKKTPIV 324 (496)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~v~ 324 (496)
++++..+.+.++++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8899999999999999987655
No 108
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=3.6e-11 Score=118.57 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=85.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++++.++|++++...+|.
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~---------------------------------- 217 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPA---------------------------------- 217 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHH----------------------------------
Confidence 5799999999999999999999999999999999999998741232
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.++++.|...+..++.++++++++.+|++||++.
T Consensus 218 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 268 (272)
T PRK06210 218 -SMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR 268 (272)
T ss_pred -HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 334788899888788899999999999999999999999999999998754
No 109
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.5e-11 Score=117.50 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=85.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+++|++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 211 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-PH---------------------------------- 211 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999863 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++.+..|.+.+..++.++++++++++|++||++.
T Consensus 212 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK09245 212 -ALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV 262 (266)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence 334788999888778899999999999999999999999999999988754
No 110
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4e-11 Score=117.39 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=83.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |.
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 202 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-PL---------------------------------- 202 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999863 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E--~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....+++++++.| ...+..++.++++++++.+|++||+++
T Consensus 203 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~ 255 (259)
T PRK06494 203 -SIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR 255 (259)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 334788899887778899999998 457888999999999999999987654
No 111
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4e-11 Score=118.22 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=84.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
|+++|++++|+||+++||||+|||+ +++++++.+++++++..+ |.
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~-~~--------------------------------- 218 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS-PL--------------------------------- 218 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC-HH---------------------------------
Confidence 5789999999999999999999986 889999999999999862 22
Q ss_pred CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+.++.|...+..++.|+++++++++|++||+++
T Consensus 219 --a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 219 --AVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred --HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 234788888887778899999999999999999999999999999988654
No 112
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.7e-11 Score=116.97 Aligned_cols=96 Identities=21% Similarity=0.316 Sum_probs=85.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~~---------------------------------- 206 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-PN---------------------------------- 206 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999998762 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|+.++.....++.++++.|.+.+..++.++++++++++|+++|+++
T Consensus 207 -~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 207 -ALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 334788899888888899999999999999999999999999999988654
No 113
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=5.7e-11 Score=116.53 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=84.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++.+++.++|++++..+ |.
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 206 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS-PQ---------------------------------- 206 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~-l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+. ++.|...+..++.|+++++++.+|++||+++
T Consensus 207 -a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~ 258 (262)
T PRK05995 207 -AVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA 258 (262)
T ss_pred -HHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 33478888888777888888 8889999999999999999999999998765
No 114
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.19 E-value=7.4e-11 Score=118.76 Aligned_cols=125 Identities=22% Similarity=0.358 Sum_probs=94.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
+||+|||+|.||.++|..++..| .+|+++|++++.++...-.+ .... .......+++.+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl------~~~~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDL------KHFS------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHH------hhhc------cccCCCeEEEeCCCHHHhCC
Confidence 49999999999999999999999 69999999987654211111 0000 00111235666678899999
Q ss_pred CCEEEEec--cCCh------------HHHHHHHHHHHhhCCCC-eeEeccCCcccHHHHHhhhcCC-Ceeeecc
Q 010966 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (496)
Q Consensus 227 aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~-~il~sntS~~~~~~la~~~~~~-~r~ig~h 284 (496)
||+||+++ ++++ .+++++..++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 7766 88999999999998777 5667998877777776666665 7888876
No 115
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.18 E-value=9.1e-11 Score=117.84 Aligned_cols=125 Identities=23% Similarity=0.334 Sum_probs=85.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.... .......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~------------~~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA------------PVEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh------------hhcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 99999999887543221111110 0011124677677888899
Q ss_pred CCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCe-eEeccCCcccHHHHHhhhcC-CCeeeec
Q 010966 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (496)
Q Consensus 226 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~~~~~~la~~~~~-~~r~ig~ 283 (496)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-..-+....+. |.|++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3566889999999999986653 44566554433333333332 3566664
No 116
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=1.2e-09 Score=109.30 Aligned_cols=202 Identities=18% Similarity=0.256 Sum_probs=128.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHhhhcceecccCcc-
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR----ANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (496)
|||+|||+|..|...+.+|+..||+|+.+|+++++++...+... ..++.+++++.. -+|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~--------~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA--------SGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc--------cCcEEEEcCHHH
Confidence 68999999999999999999999999999999999887654332 223333333221 24689999986
Q ss_pred cccCCCEEEEeccC--------ChHHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhc--CCCeeeeccccCcC
Q 010966 223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTY--SKDRIVGAHFFSPA 289 (496)
Q Consensus 223 ~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~--~~~r~ig~hf~~P~ 289 (496)
+++++|++|.||+. |+.....+.+++.++++..++++ +-||+|+ +++.+.+. .+.+-+++- +||-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE 150 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE 150 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence 58999999999975 34455677788888888866555 4566665 34443321 111111111 2332
Q ss_pred CC----------CCeEEEEeCCCCCHHHHHHHHHHHHHc--CCceEEecCcc-c----chhhchHH---HHHHHHHHHHH
Q 010966 290 HV----------MPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNCT-G----FAVNRMFF---PYTQAAFLLVE 349 (496)
Q Consensus 290 ~~----------~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~v~v~d~~-G----~i~nril~---~~~~ea~~l~~ 349 (496)
-. .|-- ++-|.. ++.+.+.+.+++... ...|+++.+.. . +..|-.|+ .++||-..+.+
T Consensus 151 FLREG~Av~D~~~PdR-IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 151 FLREGSAVYDFLYPDR-IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HhcCcchhhhccCCCe-EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111 333322 233555566666544 55666665422 2 24566664 46899888775
Q ss_pred -cCCCHHHHHHHH
Q 010966 350 -RGTDLYLIDRAI 361 (496)
Q Consensus 350 -~g~~~~~ID~a~ 361 (496)
-|++.++|-+++
T Consensus 229 ~~g~D~~~V~~gI 241 (414)
T COG1004 229 KVGADVKQVAEGI 241 (414)
T ss_pred HhCCCHHHHHHHc
Confidence 688999988776
No 117
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.18 E-value=3.4e-11 Score=133.21 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=77.3
Q ss_pred ccchhhchHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCc---chhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966 329 TGFAVNRMFFPYTQAAFLLVERG-T-DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (496)
Q Consensus 329 ~G~i~nril~~~~~ea~~l~~~g-~-~~~~ID~a~~-~~g~p~---GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~ 402 (496)
+..|+||++.++++|+++++++| + +++|||.+|. |+|||+ |||+++|.+|+|.+.++++.+. .+++++.|+++
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~ 702 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAK 702 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHH
Confidence 45699999999999999999999 5 9999999999 999996 9999999999999999999654 78888889999
Q ss_pred HHHHHhcCCCccccCceee
Q 010966 403 IPIMQEDKRAGETTRKGFY 421 (496)
Q Consensus 403 l~~~~~~G~lG~k~g~GFY 421 (496)
+.+|+++| +.||
T Consensus 703 l~~~~~~g-------~~f~ 714 (714)
T TIGR02437 703 LREMAKNG-------QSFY 714 (714)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999986 6686
No 118
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=7.2e-11 Score=115.65 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=85.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+++|++++|+||+++||||+|+|++++++.|.++|++++..+ |.
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~~---------------------------------- 204 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-AS---------------------------------- 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999998862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++++..|.+.+..++.++++++++++|++||+++
T Consensus 205 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~ 255 (259)
T PRK06688 205 -ALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD 255 (259)
T ss_pred -HHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 223678888888888899999999999999999999999999999987654
No 119
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=3.3e-09 Score=105.74 Aligned_cols=201 Identities=18% Similarity=0.247 Sum_probs=132.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhcceeccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (496)
.+|+|||+|.+|..+|..++++|++|+.+|+|+.+.+.....- ...+...++ .++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence 7999999999999999999999999999999999887643210 011111222 25678899
Q ss_pred CcccccCCCEEEEeccC--------ChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcC--CCeeeecccc-
Q 010966 220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYS--KDRIVGAHFF- 286 (496)
Q Consensus 220 ~~~~~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~--~~r~ig~hf~- 286 (496)
+.+.++.||++|.|||. |+....+..+.|.+.++++.+++.-|++. ..+++...+-. +.=.++.-|+
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999985 34445566678999999999877544433 24455443311 1111222222
Q ss_pred --CcCCCCC---eEE------EEeCCCCCHHHHHHHHHHHHHcCCceEEecCcc-c---chhhchH----HHHHHHHHHH
Q 010966 287 --SPAHVMP---LLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT-G---FAVNRMF----FPYTQAAFLL 347 (496)
Q Consensus 287 --~P~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~-G---~i~nril----~~~~~ea~~l 347 (496)
+|-+.+| +.| ++.| .+++..+.+..+.+.+=+..+.+.+.. . -+..+++ .++.||-..+
T Consensus 158 aysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 158 AYSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred eeCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4544332 223 4544 578899999999998766666655421 2 2334444 3567887766
Q ss_pred H-HcCCCHHHHHHHHH
Q 010966 348 V-ERGTDLYLIDRAIT 362 (496)
Q Consensus 348 ~-~~g~~~~~ID~a~~ 362 (496)
. +.|++..++=++..
T Consensus 236 ~~~~GIdvwevIeaAn 251 (436)
T COG0677 236 CNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHhCCcHHHHHHHhc
Confidence 5 57998877666654
No 120
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.17 E-value=3.7e-10 Score=115.10 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=107.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcceecccCcc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYE 222 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 222 (496)
++||+|||+|.||+.+|..|+++|++|+++|+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 57899999999999999999999999999999653 22211 1121 00 000001112344556667
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeeeeccccC-----cCCC--CCe
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFS-----PAHV--MPL 294 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~ig~hf~~-----P~~~--~~l 294 (496)
.+.++|+||.|++... ..+++.++.+.++++++|++.++++.. +.+.+.++....+.|.+++. |... ...
T Consensus 70 ~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 7889999999998653 467888999999999988887777764 45666664433344545432 2110 000
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcc
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~ 329 (496)
-.+.-+. .+.++.+.++++..|....+++|..
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~ 179 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMR 179 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhH
Confidence 0122221 2446788999999998888887743
No 121
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.17 E-value=3.4e-11 Score=128.52 Aligned_cols=95 Identities=9% Similarity=0.014 Sum_probs=87.0
Q ss_pred cccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 010966 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (496)
Q Consensus 2 iltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 81 (496)
++||++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p~----------------------------------- 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-PD----------------------------------- 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-HH-----------------------------------
Confidence 589999999999999999999999999999999999999873 32
Q ss_pred cHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhcCCC
Q 010966 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTS 132 (496)
Q Consensus 82 A~~~~k~~i~~~~~~~~~~~-l~~E~~~~~~l~~s~~a~~---~i~aF~~kr~~~ 132 (496)
|...+|++++.+...+++++ +..|.+.|..+++|+++++ ++++|++||+++
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~ 544 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQ 544 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCC
Confidence 33478999999999999999 9999999999999999999 999999999875
No 122
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.17 E-value=3.6e-11 Score=127.96 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=87.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++|+|+||++|||||+|+|++++++++.++|++++..+ |.
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~---------------------------------- 485 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-PD---------------------------------- 485 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence 4789999999999999999999999999999999999999873 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~-l~~E~~~~~~l~~s~~a~~---~i~aF~~kr~~~ 132 (496)
|...+|++++.....+++++ +..|...|..++.|+++++ ++.+|++||+++
T Consensus 486 -a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~ 540 (546)
T TIGR03222 486 -ALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQ 540 (546)
T ss_pred -HHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCC
Confidence 33478899999989999999 9999999999999999999 999999999865
No 123
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=9.4e-11 Score=114.36 Aligned_cols=93 Identities=22% Similarity=0.156 Sum_probs=81.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++++.++|+++++.+ |.
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 201 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP-QT---------------------------------- 201 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999863 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~ 130 (496)
+...+|++++.....++++++..|...+..++. +++++++.+|++|++
T Consensus 202 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 202 -CLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 234788888887778899999999988888877 999999999998876
No 124
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.16 E-value=7.5e-11 Score=115.56 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=83.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|+|++++.+++.+++++++..+ |.
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 202 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-PL---------------------------------- 202 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHH----HHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~----~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++++..|. ..+..++.++++++++++|++||+++
T Consensus 203 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 257 (261)
T PRK03580 203 -AIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV 257 (261)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 2346888888877788999988886 37888999999999999999998654
No 125
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=6.7e-11 Score=115.85 Aligned_cols=95 Identities=20% Similarity=0.170 Sum_probs=84.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|| ++++.+++.+++++++..+ |.
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~-~~---------------------------------- 205 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKP-LK---------------------------------- 205 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 57999999999999999999999 7889999999999998862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++.++.|.+.+..++.++++++++.+|++||+++
T Consensus 206 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 256 (260)
T PRK07659 206 -AMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV 256 (260)
T ss_pred -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 234788888887778899999999999999999999999999999998765
No 126
>PLN02712 arogenate dehydrogenase
Probab=99.16 E-value=5.7e-10 Score=122.34 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=108.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (496)
..++|+|||+|.||.++|..|...|++|++||++.+. +.+. +.| +...++.++ +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence 3479999999999999999999999999999998642 2111 122 112334443 4
Q ss_pred c-CCCEEEEeccCChHHHHHHHHHHHh-hCCCCeeEeccCCc--ccHHHHHhhhcCCCeeeeccccCcCCCCC-------
Q 010966 225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP------- 293 (496)
Q Consensus 225 ~-~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~--~~~~~la~~~~~~~r~ig~hf~~P~~~~~------- 293 (496)
. .+|+||.|+|.. ....++.++.. .++++++|++.+|+ .+++.+...++...+|++.||+.++....
T Consensus 423 ~~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 589999999943 45567777764 57889999988777 45566666665555799999998765421
Q ss_pred -eEE--EEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 294 -LLE--IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 294 -lve--iv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+++ ++.++....+.++.+.+++..+|..++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 111 223444455667777899999999888885
No 127
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1e-10 Score=114.20 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=84.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|+|++++++.+.+++++++..+ |.
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 206 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-SN---------------------------------- 206 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~ 130 (496)
+...+|+.++.....++++.+..|...+..++.|+++++++++|.+||+
T Consensus 207 -a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 207 -SYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 3347889998887888999999999999999999999999999999874
No 128
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.15 E-value=9e-11 Score=115.23 Aligned_cols=96 Identities=17% Similarity=0.258 Sum_probs=82.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||+++|.+++.+++++++..+ |.
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~---------------------------------- 208 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-PQ---------------------------------- 208 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~-E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++.+++.. |...+..++.|+++++++++|++||+++
T Consensus 209 -a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~ 260 (265)
T PRK05674 209 -ALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA 260 (265)
T ss_pred -HHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence 23478888888888888888765 4567888899999999999999998754
No 129
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.15 E-value=8.9e-10 Score=110.69 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=93.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
+||+|||+|.||.+||..|+.+|++|++||++++ +++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHHhc
Confidence 5899999999999999999999999999999853 011 23568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEeccCCcccH------HHHHh-hhcCCCeeeeccccCcCC------CC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL------NLIGE-RTYSKDRIVGAHFFSPAH------VM 292 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~~~~------~~la~-~~~~~~r~ig~hf~~P~~------~~ 292 (496)
+|+||.++|.+ ..+.++..+.++ +++++++++.++++++ +++.. .+.. .+++. +..|.. ..
T Consensus 48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCC
Confidence 99999999974 466778888764 6788888876654443 22222 1111 12220 112211 11
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCccc
Q 010966 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (496)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (496)
+...++.+ .+.+..+.+.+++...|..+...+|.-|
T Consensus 123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 23333333 3788899999999999988887666434
No 130
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.13 E-value=9.1e-10 Score=111.66 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=100.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
++||+|||+|.||.+||..|+++|++|++|+++++..+.....- ..+..-+. .....++..+++. +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~--------~~~~~~~g--~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAER--------ENREYLPG--VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhC--------cccccCCC--CcCCCCeEEeCCHHHHHc
Confidence 46899999999999999999999999999999988766543210 00100000 0011224445555 4478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc-----HHHHHhhhcC---C-CeeeeccccCcCC---CCC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS---K-DRIVGAHFFSPAH---VMP 293 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~-----~~~la~~~~~---~-~r~ig~hf~~P~~---~~~ 293 (496)
++|+||.|+|+.. + .+++ +.+++++++++.+.++. ...+++.+.. . ..+++ -|..+.. ..+
T Consensus 74 ~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~ 146 (328)
T PRK14618 74 GADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLP 146 (328)
T ss_pred CCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCC
Confidence 9999999999773 2 3333 45567777776666554 4455554422 1 11111 1111111 113
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
...++.+ .+++.++.+.++++..|..+....|
T Consensus 147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~d 178 (328)
T PRK14618 147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRD 178 (328)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCC
Confidence 3344444 4788899999999999988876555
No 131
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.13 E-value=2.5e-10 Score=112.52 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=112.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (496)
++||+|||+|.||.++|..|+++||+|++|.++++.++..... +.+- +.+. |. .....+..++|++ .++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~-~yLp-~i-------~lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENP-KYLP-GI-------LLPPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCc-cccC-Cc-------cCCcccccccCHHHHHh
Confidence 3699999999999999999999999999999999987764321 1000 0000 11 1224577788875 467
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc------cHHHHHhhhcCCCeeeeccccCcC-------CCC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI------DLNLIGERTYSKDRIVGAHFFSPA-------HVM 292 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~------~~~~la~~~~~~~r~ig~hf~~P~-------~~~ 292 (496)
+||+|+.+||.. ..++++.++..++++++++++.+-++ .++++.+..-...+ ++ +.+.| ...
T Consensus 71 ~ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~-~~--vLSGPs~A~EVa~g~ 145 (329)
T COG0240 71 GADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP-IA--VLSGPSFAKEVAQGL 145 (329)
T ss_pred cCCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe-EE--EEECccHHHHHhcCC
Confidence 899999999965 57788999988889999888876554 34555443311112 22 22222 134
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (496)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~ 331 (496)
|...++.+ .+++..+.++.+|..--..++...|..|-
T Consensus 146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gv 182 (329)
T COG0240 146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIGV 182 (329)
T ss_pred CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhhh
Confidence 55555555 47888888888888755566666675553
No 132
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.13 E-value=2e-09 Score=99.37 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=104.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
||+|+|+|+|.||+++|..|+++||+|++-.++ +++++...+.+ ...++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence 579999999999999999999999999999655 44444432211 12345556667889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc----------------cHH-HHHhhhcCCCeeeeccccC-
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGAHFFS- 287 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~----------------~~~-~la~~~~~~~r~ig~hf~~- 287 (496)
.||+||.+||- +-...+.+++...+. +.|+++.|-.+ +.+ .+++.++.. +++.. |.+
T Consensus 60 ~aDVVvLAVP~--~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i 134 (211)
T COG2085 60 LADVVVLAVPF--EAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI 134 (211)
T ss_pred cCCEEEEeccH--HHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence 99999999984 345677888887766 67776554431 223 334444443 44443 321
Q ss_pred --------cCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 288 --------PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 288 --------P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
+........++.+ .|.+..+.+.++.+.+|..|+.++.
T Consensus 135 ~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 135 PAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred CHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 1111334445555 4788999999999999999999874
No 133
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.13 E-value=9.6e-11 Score=114.65 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=79.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+++|++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 205 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS-PM---------------------------------- 205 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++..... ....+..|...+..++.|+++++++.+|++||+++
T Consensus 206 -a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 255 (259)
T TIGR01929 206 -AIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD 255 (259)
T ss_pred -HHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 233677888765433 34556667788999999999999999999998765
No 134
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.13 E-value=1.4e-10 Score=114.34 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=79.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|++||++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 215 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS-PM---------------------------------- 215 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.... ..+...+.|...+..++.|+++++++.+|++||+++
T Consensus 216 -a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 265 (273)
T PRK07396 216 -ALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPD 265 (273)
T ss_pred -HHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCC
Confidence 23367888876543 345555678888899999999999999999998764
No 135
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.12 E-value=1.6e-09 Score=106.02 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=102.3
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCEEEEeccCChH
Q 010966 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (496)
Q Consensus 162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~ 239 (496)
||..|.++| ++|+.+|++++.++.+. +.|.++. ..++.+.+++||+||.|+|..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP~~-- 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVPVS-- 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S-HH--
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCCHH--
Confidence 578888888 79999999999877653 3454432 122256789999999999854
Q ss_pred HHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCcCC------------CCCeEEEEeCCCCCH
Q 010966 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 305 (496)
Q Consensus 240 ~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P~~------------~~~lveiv~~~~t~~ 305 (496)
....++.++.++++++++|+..+|.. ++..+...+....+|+|.||+..+. ....+-+++++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 56789999999999999999888875 3455566555568999999986551 246788889999999
Q ss_pred HHHHHHHHHHHHcCCceEEec
Q 010966 306 QVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+.++.+.++++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999988874
No 136
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.12 E-value=1.9e-10 Score=113.52 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=81.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||+++|++++.+++++++..+ |.
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~---------------------------------- 212 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-PV---------------------------------- 212 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHhhcCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRGT 131 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~--~~~~l~~s~-~a~~~i~aF~~kr~~ 131 (496)
+...+|++++.....++.+.++.|.. .+..++.++ ++++++++|++||..
T Consensus 213 -a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~~ 265 (275)
T PRK09120 213 -VLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKSY 265 (275)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcccC
Confidence 33478899998888889999888764 355678898 899999999998873
No 137
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.12 E-value=1.5e-10 Score=104.62 Aligned_cols=105 Identities=23% Similarity=0.292 Sum_probs=76.0
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccCC
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDV 227 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 227 (496)
||+|||+|.||.++|..++.+|++|++|.++++.++...+. .......+. ......+..++|++ .++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999877654321 000000010 12224677788874 58999
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~ 265 (496)
|+||.+||... -+++++++.+++++++++++.+-++
T Consensus 71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999764 5789999999999999888877665
No 138
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=2.1e-10 Score=113.36 Aligned_cols=96 Identities=23% Similarity=0.179 Sum_probs=79.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p~---------------------------------- 218 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-RP---------------------------------- 218 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~-~~~~~l~~E~~~~~-~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++..... ++++.+..|...+. .++.|+++++++.+|++||+++
T Consensus 219 -a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~ 271 (276)
T PRK05864 219 -GIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV 271 (276)
T ss_pred -HHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 234678888776654 68888887875432 3578999999999999998654
No 139
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.11 E-value=1.8e-10 Score=112.90 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=81.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |.
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 204 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-PL---------------------------------- 204 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~-~~~-~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.... .+. ...++.|...+..++.|+++++++.+|++||+++
T Consensus 205 -a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~ 257 (261)
T PRK11423 205 -AIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV 257 (261)
T ss_pred -HHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence 23468888876543 333 5778888899999999999999999999988765
No 140
>PLN02921 naphthoate synthase
Probab=99.09 E-value=2.6e-10 Score=114.76 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=77.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p~---------------------------------- 269 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-PT---------------------------------- 269 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++..... .......|...+..++.++++++++.+|++||++.
T Consensus 270 -al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~ 319 (327)
T PLN02921 270 -AIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPD 319 (327)
T ss_pred -HHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 233678888766443 33333445578888999999999999999998765
No 141
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.08 E-value=2.6e-09 Score=104.53 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=97.0
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-cccccCCCEEEEeccCC
Q 010966 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN 237 (496)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVIeav~e~ 237 (496)
|.+||.+|+++||+|++||+++++.+... .+...+.|. ..+++ .+.+++||+||.|+|..
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA-------------~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV-------------KVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC-------------eecCCHHHHHhCCCEEEEecCCH
Confidence 89999999999999999999987654211 011123332 12333 46688999999999966
Q ss_pred hHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhc----CCCeeeeccccCcCC--CC--CeEEEEeC------CCC
Q 010966 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----SKDRIVGAHFFSPAH--VM--PLLEIVRT------NQT 303 (496)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~----~~~r~ig~hf~~P~~--~~--~lveiv~~------~~t 303 (496)
..+ .+++..+.+.++++++++ ++||+++..+...+. ...+-+|+..|.|.. .+ .-.-++.+ .-.
T Consensus 93 aaV-~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGT-FSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHH-HHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 554 455677888889998775 467777765544332 222345555554432 12 11112222 235
Q ss_pred CHHHHHHHHHHHHHcCCceEEec
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
++|.+++..++.+..|+.++++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 78999999999999999999875
No 142
>PRK08321 naphthoate synthase; Validated
Probab=99.06 E-value=3.7e-10 Score=112.92 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=79.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |.
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 244 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-PT---------------------------------- 244 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++..... ..+....|.+.+..++.++++++++.+|++||++.
T Consensus 245 -a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~ 294 (302)
T PRK08321 245 -AMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPD 294 (302)
T ss_pred -HHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 234678888765443 34445568899999999999999999999998765
No 143
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.06 E-value=3.9e-10 Score=110.15 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=75.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|++||++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~~---------------------------------- 202 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-PT---------------------------------- 202 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999863 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++......... ...|...+..++.|+++++++.+|++||+++
T Consensus 203 -a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~ 252 (256)
T TIGR03210 203 -AIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPE 252 (256)
T ss_pred -HHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence 2336788877654332111 1235567888999999999999999998755
No 144
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=4.6e-10 Score=110.05 Aligned_cols=92 Identities=24% Similarity=0.270 Sum_probs=76.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~~---------------------------------- 211 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA-PL---------------------------------- 211 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|+.++..... .++.|.+.+..++.++++++++.+|++||++.
T Consensus 212 -a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK06144 212 -TLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPK 258 (262)
T ss_pred -HHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 233677887765443 34556678888999999999999999988754
No 145
>PLN02712 arogenate dehydrogenase
Probab=99.04 E-value=6.4e-09 Score=114.12 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=104.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c-
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (496)
.++|+|||+|.||+++|..|.+.|++|++||++... +.+. +.| +...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence 468999999999999999999999999999998543 2111 112 112334443 3
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHH-hhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeeccccCcCCC-----CCeEE
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE 296 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~-~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~~P~~~-----~~lve 296 (496)
.+||+||.|+|.+ ....++.++. +.++++++|++.+|... +..+...++...+|++.||+..+.. .....
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 4699999999953 4567777775 56788999887776553 3445555544457999999865531 11112
Q ss_pred EEe-----CCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 297 iv~-----~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222334567788899999999999885
No 146
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.03 E-value=6.2e-10 Score=108.43 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=78.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+++|++++|+||+++||||+|||++++++++.+++++++..+ |.
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 205 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP-PQ---------------------------------- 205 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k 128 (496)
+...+|++++... .++.+.+..|.+.+..++.++++++++++|++|
T Consensus 206 -a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 206 -ALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred -HHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 2236788887653 468888999999999999999999999999874
No 147
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.02 E-value=7.4e-09 Score=105.42 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=112.9
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcceecccCcc
Q 010966 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDYE 222 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~ 222 (496)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+ .+.... .+-.....++..+++++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCCcccCCCeEEECCHH
Confidence 34679999999999999999999999 79999999987665432 110000 00001123455666764
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH------H-HHHhhhcCCCeeeeccccCcCC---C
Q 010966 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------N-LIGERTYSKDRIVGAHFFSPAH---V 291 (496)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~------~-~la~~~~~~~r~ig~hf~~P~~---~ 291 (496)
.++++|+||.|||.. .-.++++++.++++++++++|.+.++.. + .+.+.++.....+-..|..+.. .
T Consensus 73 ~a~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g 150 (341)
T PRK12439 73 EAANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEG 150 (341)
T ss_pred HHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcC
Confidence 578999999999844 4678899999999888877776666654 3 3444443211111111221111 2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHH
Q 010966 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFF 338 (496)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~ 338 (496)
.+...++.+. +++..+.+.+++..-+..+....|..|...--.+.
T Consensus 151 ~~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alk 195 (341)
T PRK12439 151 YAAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALK 195 (341)
T ss_pred CCeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHH
Confidence 2333334442 67788889999988888777777866654433333
No 148
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=8.7e-10 Score=110.02 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=78.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++++.+++++++...+|.
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~---------------------------------- 222 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPV---------------------------------- 222 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChH----------------------------------
Confidence 5799999999999999999999999999999999999998741122
Q ss_pred CcHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 010966 81 THPIVCIDVVEAGVVS--GPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~--~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~ 133 (496)
+...+|++++..... ... ....|...+..++.++++++++.+|++||++..
T Consensus 223 -a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f 275 (296)
T PRK08260 223 -SVALTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVF 275 (296)
T ss_pred -HHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCC
Confidence 234688888776432 333 445688889999999999999999999987653
No 149
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.01 E-value=1.8e-09 Score=99.98 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=71.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHh----h--hcceeccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--TQEKFEK----T--ISLLTGVL 219 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~----~--~~~i~~~~ 219 (496)
|||+|||+|.+|..+|..|+.+||+|+.+|+|++.++...+ |.. .+...+. . -+++++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhh
Confidence 69999999999999999999999999999999998876432 221 1111111 1 25678888
Q ss_pred Cccc-ccCCCEEEEeccC--------ChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966 220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (496)
Q Consensus 220 ~~~~-~~~aDlVIeav~e--------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~ 267 (496)
+.+. +++||++|.|||. |+....+...+|.+++.++.+++- -||+++
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp 124 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP 124 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence 8765 8999999999974 334456778889999999887763 445544
No 150
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.00 E-value=6.2e-10 Score=108.11 Aligned_cols=92 Identities=25% Similarity=0.352 Sum_probs=82.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|+|++++.+.+.+++++++..+ |.
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~~---------------------------------- 198 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-PS---------------------------------- 198 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-HH----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-HH----------------------------------
Confidence 4789999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k 128 (496)
+...+|+.++......+.+.+..|...+..++.++++++++++|++|
T Consensus 199 -a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 199 -ALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp -HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 22378888988888889999999999999999999999999999986
No 151
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1e-09 Score=107.69 Aligned_cols=94 Identities=23% Similarity=0.251 Sum_probs=81.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|++ ++.+++.+++++++..+ |.
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~-~~---------------------------------- 208 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS-PD---------------------------------- 208 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 578999999999999999999995 37889999999998862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|+.++.....++++.+..|.+.+..++.++++++++.+|++||++.
T Consensus 209 -~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 259 (262)
T PRK07509 209 -AIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK 259 (262)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 234788888888788899999999999999999999999999999988654
No 152
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=6.7e-10 Score=108.11 Aligned_cols=90 Identities=14% Similarity=0.024 Sum_probs=79.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|| +++++++.++|++++..+ |.
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~~---------------------------------- 201 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-RE---------------------------------- 201 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 57899999999999999999999 679999999999999863 32
Q ss_pred CcHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 010966 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (496)
Q Consensus 81 pA~~~~k~~i~~~~~-~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~k 128 (496)
+...+|+.++.... .+++++++.|...+..++.|+++++++++|+++
T Consensus 202 -a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 202 -LVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred -HHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 33478899988777 789999999999999999999999999999874
No 153
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.99 E-value=1.3e-09 Score=89.82 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=67.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (496)
||+|||+|.||.+|+..|..+| ++|+++ +++++++++..++ .+ ......+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 899966 9999988775421 11 111222344667
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
+++|+||.|||.. .-.+++.++ ....++.+++|.+.
T Consensus 60 ~~advvilav~p~--~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVKPQ--QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S-GG--GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEECHH--HHHHHHHHH-hhccCCCEEEEeCC
Confidence 8999999999744 466788888 66678888887654
No 154
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.99 E-value=2.7e-08 Score=104.89 Aligned_cols=203 Identities=15% Similarity=0.203 Sum_probs=125.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-----hcceeccc
Q 010966 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-----ISLLTGVL 219 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~ 219 (496)
+|||+|||+|.+|..+|..|+.+ |++|+++|++++.++...+.... +.+...... -.++++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~----------~~e~gl~ell~~~~~~~l~~t~ 70 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP----------IYEPGLDEVVKQCRGKNLFFST 70 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc----------cCCCCHHHHHHHhhcCCEEEEc
Confidence 46899999999999999999988 47899999999998875422100 111112221 12588888
Q ss_pred Ccc-cccCCCEEEEeccCC-------------hHHHHHHHHHHHhhCCCCeeEeccCCcccH---HHHHhhhcCCCeeee
Q 010966 220 DYE-SFKDVDMVIEAIIEN-------------VSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVG 282 (496)
Q Consensus 220 ~~~-~~~~aDlVIeav~e~-------------~~~k~~v~~~l~~~~~~~~il~sntS~~~~---~~la~~~~~~~r~ig 282 (496)
+++ .+++||++|.|||.. +....++.++|.++++++++|+. .|+.++ +.+...+..... |
T Consensus 71 ~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~--g 147 (473)
T PLN02353 71 DVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSK--G 147 (473)
T ss_pred CHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCC--C
Confidence 875 589999999999632 23556777889999998887653 344433 344433321110 1
Q ss_pred ccc---cCcCCCC---------CeEEEE-eCC--CCCHHHHHHHHHHHHHcCC-ceEEecCc--c--cchhhchH----H
Q 010966 283 AHF---FSPAHVM---------PLLEIV-RTN--QTSPQVIVDLLDIGKKIKK-TPIVVGNC--T--GFAVNRMF----F 338 (496)
Q Consensus 283 ~hf---~~P~~~~---------~lveiv-~~~--~t~~e~~~~~~~l~~~lGk-~~v~v~d~--~--G~i~nril----~ 338 (496)
..| ++|-... ..--++ .+. .+.++..+.+.+++..+-+ .++.+.+. . ..++.+.+ .
T Consensus 148 ~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~I 227 (473)
T PLN02353 148 INFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRI 227 (473)
T ss_pred CCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHH
Confidence 111 2443221 111143 442 2225678888888887742 45555431 1 12333333 2
Q ss_pred HHHHHHHHHHH-cCCCHHHHHHHHH
Q 010966 339 PYTQAAFLLVE-RGTDLYLIDRAIT 362 (496)
Q Consensus 339 ~~~~ea~~l~~-~g~~~~~ID~a~~ 362 (496)
+++||-..+.+ .|+++.+|-+++.
T Consensus 228 af~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 228 SSVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 56899887764 6999999999886
No 155
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1.6e-09 Score=105.27 Aligned_cols=93 Identities=18% Similarity=0.128 Sum_probs=79.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||.+ +++++++.++|++++..+ |.
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~-~~---------------------------------- 193 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP-FQ---------------------------------- 193 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999963 457889999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++.++.|.+.+..++.++++++++.+|++||+++
T Consensus 194 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 194 -SYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred -HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 234688888887778899999999999999999999999999999998765
No 156
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.98 E-value=1.8e-09 Score=105.10 Aligned_cols=94 Identities=16% Similarity=0.290 Sum_probs=76.3
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHH-HHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~-a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
|+|||++++|+||+++||||+|+|+.+ +.+.++ +++++..+ |.
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~-p~--------------------------------- 195 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLS-AS--------------------------------- 195 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCC-HH---------------------------------
Confidence 579999999999999999999997543 566665 67888762 32
Q ss_pred CCcHHHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 80 ~pA~~~~k~~i~~~~~~~~~~~l-~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++++ +.|...+..++.|+++++++++|++||+++
T Consensus 196 --a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 247 (251)
T TIGR03189 196 --SLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL 247 (251)
T ss_pred --HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence 334678888887777887776 478888999999999999999999999765
No 157
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.97 E-value=1.5e-08 Score=106.42 Aligned_cols=177 Identities=14% Similarity=0.148 Sum_probs=120.7
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc----ccCCCEEEEe
Q 010966 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (496)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVIea 233 (496)
||..||.+|+++|++|++||+++++.+...+. .|. -..++...++++ ++.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK---------GKKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC---------CCCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988765321 110 011334445543 3358999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcCCCeeeecccc-CcCCC-------CCeEEEEeCCCC
Q 010966 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 303 (496)
Q Consensus 234 v~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~~~r~ig~hf~-~P~~~-------~~lveiv~~~~t 303 (496)
||....+ .+++..+.+.+.++.||+..+++.+ ..+.++.+.. .|.||+ .|+.. ++ .+++| .
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~G--G 132 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPG--G 132 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEe--C
Confidence 9988665 4566888888888888775443332 3344444432 256665 35443 33 34544 3
Q ss_pred CHHHHHHHHHHHHHcCCce-------EEecC-cccc---hhhc-hHHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 010966 304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AVNR-MFFP---YTQAAFLLVE--RGTDLYLIDRAIT 362 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~-------v~v~d-~~G~---i~nr-il~~---~~~ea~~l~~--~g~~~~~ID~a~~ 362 (496)
++++++.++++++.++... .++++ +.|. ++++ +... .+.|++.+++ .|++++++-+++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7999999999999999876 77875 3343 3444 4443 3689998887 4889999988884
No 158
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.97 E-value=8.2e-10 Score=112.14 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=82.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHh-----------hhccCCCcchhhc------cc-CCCCCchhH
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALD-----------ILEHRRPWVATLY------KT-DKIEPLGEA 62 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~-----------l~~~~~p~~~~~~------~~-~~~~~~~~~ 62 (496)
|+|||++++|+||+++||||+|+|++++.+...++++. +...-....+... .. .-+.. ...
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 241 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG-DTV 241 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-CCH
Confidence 57999999999999999999999998887763332210 0000000000000 00 00000 000
Q ss_pred HHHHH--------HHHHHHHhhCC-CCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hhcCCC
Q 010966 63 REIFK--------FARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQRGTS 132 (496)
Q Consensus 63 ~~~~~--------~~~~~~~~~~~-~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~-~kr~~~ 132 (496)
+..+. .+.+.+++-.. ...+...+|++++.....+++++++.|...+..++.++++++++++|+ +|++.+
T Consensus 242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 01111 12222222222 234778899999988888999999999999999999999999999997 663344
Q ss_pred CC
Q 010966 133 KV 134 (496)
Q Consensus 133 ~~ 134 (496)
++
T Consensus 322 ~~ 323 (342)
T PRK05617 322 KW 323 (342)
T ss_pred CC
Confidence 44
No 159
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=1.6e-09 Score=106.60 Aligned_cols=92 Identities=18% Similarity=0.150 Sum_probs=72.1
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++++.++|++++..+ |.
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 214 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-QT---------------------------------- 214 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~---~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.... .+++..+..| ..++.++++++++.+|++||++.
T Consensus 215 -a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~ 264 (268)
T PRK07327 215 -AIRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPD 264 (268)
T ss_pred -HHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCC
Confidence 22356777765322 2344444444 34678999999999999998765
No 160
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.95 E-value=2e-09 Score=105.15 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=76.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|+|++++|+||+++||||+|||+++. .+.+++++++..+ |.
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~-p~---------------------------------- 201 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN-KA---------------------------------- 201 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999987653 5778888888762 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.. ...+.++++.|.+.+..++.|+++++++.+|++||++.
T Consensus 202 -a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 251 (255)
T PRK07112 202 -AVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP 251 (255)
T ss_pred -HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence 233678887754 44688899999999999999999999999999988654
No 161
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=2e-09 Score=105.47 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=82.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+++|++++|+||+++||||++++ ++.+.+.+++++++..+ |.
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~-~~---------------------------------- 206 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS-PQ---------------------------------- 206 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 578999999999999999999974 58999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.....++++.++.|...+..++.++++++++++|++||+++
T Consensus 207 -a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 207 -GLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 334788999988888899999999999999999999999999999988643
No 162
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.91 E-value=4.6e-09 Score=90.67 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=71.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
-.||+|||+|.+|..++..|.++||+|..+ .++++..+++...+ ......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence 469999999999999999999999998775 67776665543211 1111222235578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhh--CCCCeeEeccCCcccHHHHHhhhcCCCeeeeccc
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~--~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf 285 (496)
++|+||.+||++ ...++.++|... ..++++|+=.+..++.+-|............+||
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999988 356888888877 6788888755555565555554444455666775
No 163
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.90 E-value=4.6e-09 Score=101.81 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=75.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|++ + +++.+++++++..+ |.
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~-~~---------------------------------- 190 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA-PL---------------------------------- 190 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC-HH----------------------------------
Confidence 579999999999999999999975 2 37899999998862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
+...+|++++.. .+++++++.|...+..++.++++++++.+|++||++.
T Consensus 191 -a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 239 (243)
T PRK07854 191 -ALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK 239 (243)
T ss_pred -HHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence 234678888765 6688999999999999999999999999999988754
No 164
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.90 E-value=5.2e-09 Score=104.69 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=78.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
+||+|||+|.||.++|..++..|+ +|+++|++++..+ +.. ...++ .+ .......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 8999999866433 221 01111 11 01112357888888988999
Q ss_pred CCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEe--ccCCcccHHHHHhhhcC-CCeeeec
Q 010966 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGA 283 (496)
Q Consensus 227 aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~--sntS~~~~~~la~~~~~-~~r~ig~ 283 (496)
||+||.++. .+..+.+++.+++.++. ++.+++ ||...+-..-+....+. +.|++|+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 999999986 24455666677788876 444443 44322222222222222 3566665
No 165
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.87 E-value=1.6e-09 Score=111.40 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=81.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHH----------HhhhccC-CCc------chh-h-cccCCCCCchh
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEHR-RPW------VAT-L-YKTDKIEPLGE 61 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a----------~~l~~~~-~p~------~~~-~-~~~~~~~~~~~ 61 (496)
|+|||++++|++|+++||||+|||++++.+.+.+++ +++.... .+. ... . .....+... .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 579999999999999999999999988876332221 1111000 000 000 0 000000000 0
Q ss_pred HHHHHH------------HHHHHHHhhCCCCC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Q 010966 62 AREIFK------------FARAQARKQAPNLT-HPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (496)
Q Consensus 62 ~~~~~~------------~~~~~~~~~~~~~p-A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~---s~~a~~~i~aF 125 (496)
....+. ++.+.++.-....| +...+|++++.+...+++++++.|......++. ++|+++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 011111 11222222233333 678899999998888999999999888887777 99999999999
Q ss_pred H-hhcCCCCCCC
Q 010966 126 F-AQRGTSKVPG 136 (496)
Q Consensus 126 ~-~kr~~~~~~~ 136 (496)
+ +|++.+++.+
T Consensus 327 lidK~r~P~w~~ 338 (379)
T PLN02874 327 VIDKDNAPKWNP 338 (379)
T ss_pred EEcCCCCCCCCC
Confidence 7 7744444543
No 166
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.86 E-value=7.5e-09 Score=100.69 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=79.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|++||++++|+||+++||||+|+|++++++++.++|+++++.+ |.
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 202 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP-RH---------------------------------- 202 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF 125 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF 125 (496)
+...+|+.++.....++.++++.|...+..++.++++++++...
T Consensus 203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 203 -SLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred -HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 23478899998888899999999999999999999999998864
No 167
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.84 E-value=5.1e-08 Score=98.81 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=103.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcceecccCcc-cc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYE-SF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~-~~ 224 (496)
|||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..+. +.. ......+..+++++ .+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~ 68 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVL 68 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHH
Confidence 479999999999999999999999999999998766553221 0010 000 00112344556654 34
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHHHh-hCCCCeeEeccCCcccH-------HHHHhhhcCCCeeeeccccCcC------
Q 010966 225 -KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPA------ 289 (496)
Q Consensus 225 -~~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~~~~-------~~la~~~~~~~r~ig~hf~~P~------ 289 (496)
.++|+||.+||.. .-.++++++.+ ++.+++++++.++++.. +.+...++.. ++.. +..|.
T Consensus 69 ~~~~Dliiiavks~--~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~--~~Gp~~a~~~~ 143 (326)
T PRK14620 69 SDNATCIILAVPTQ--QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI--LSGPSFAKEIA 143 (326)
T ss_pred hCCCCEEEEEeCHH--HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe--ecCCcHHHHHH
Confidence 5899999999854 35678888887 87888766666666532 3344444321 2111 01121
Q ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhchHHHH
Q 010966 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY 340 (496)
Q Consensus 290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nril~~~ 340 (496)
...+....+.+ .+.+..+.+.+++..-+.......|.-|.....++...
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ 192 (326)
T PRK14620 144 EKLPCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNI 192 (326)
T ss_pred cCCCcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHH
Confidence 11221112233 34556666677776666666666676666544444333
No 168
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.80 E-value=1.6e-08 Score=98.79 Aligned_cols=94 Identities=24% Similarity=0.242 Sum_probs=79.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|+|++++++++.+++++++..+ |.
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 202 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-PA---------------------------------- 202 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhcC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQRG 130 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s---~~a~~~i~aF~~kr~ 130 (496)
+...+|++++.....+++++++.|...+..++.| +...+....|.++-+
T Consensus 203 -a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK06190 203 -AVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR 254 (258)
T ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence 3347889998888888999999999999999988 666776677776543
No 169
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.80 E-value=1.3e-07 Score=96.52 Aligned_cols=169 Identities=14% Similarity=0.064 Sum_probs=105.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcceecc
Q 010966 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLLTGV 218 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~~~ 218 (496)
+||+|||+|.||+++|..++.+| ++|.+|.++++. -+...+.++.. ... ..+.. -...+++..+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~---~~Lp~ni~~t 84 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG---IKLPDNIVAV 84 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC---CcCCCceEEe
Confidence 68999999999999999999998 899999999862 11111222111 000 00110 1133577778
Q ss_pred cCcc-cccCCCEEEEeccCChHHHHHHHHHHHh--hCCCCeeEeccCCccc--------HHHHHh-hhcCCCeeeecccc
Q 010966 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIGE-RTYSKDRIVGAHFF 286 (496)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~--~~~~~~il~sntS~~~--------~~~la~-~~~~~~r~ig~hf~ 286 (496)
+|++ .+++||+||.+||.. .-+++++++.+ +++++++++|.+-++. ++++.. .++. ++.. ..
T Consensus 85 sdl~eav~~aDiIvlAVPsq--~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~~--Ls 158 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQ--FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCCA--LS 158 (365)
T ss_pred cCHHHHHhcCCEEEEEcChH--HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeEE--EE
Confidence 8874 589999999999854 57788999988 7777777777655443 344333 3322 2211 11
Q ss_pred CcC------CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966 287 SPA------HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (496)
Q Consensus 287 ~P~------~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~ 331 (496)
-|- ...|...++.+ .+.+....++.+|..--..+....|.-|-
T Consensus 159 GPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv 207 (365)
T PTZ00345 159 GANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIGV 207 (365)
T ss_pred CCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCcccc
Confidence 121 12344445555 37788888888887655666665665553
No 170
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.80 E-value=1.8e-08 Score=98.62 Aligned_cols=93 Identities=30% Similarity=0.427 Sum_probs=79.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
|++||++++|+||+++||||+++++ +++++.+.+++++++. +|.
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~--~~~--------------------------------- 206 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA--PPL--------------------------------- 206 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc--CHH---------------------------------
Confidence 5799999999999999999999985 6999999999999886 122
Q ss_pred CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 010966 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (496)
Q Consensus 80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~ 131 (496)
+...+|..++.....++++.+..|...+...+.+++++|++++|++ |++
T Consensus 207 --a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p 255 (257)
T COG1024 207 --ALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP 255 (257)
T ss_pred --HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence 2236788888877767889999999999988899999999999999 543
No 171
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.79 E-value=1.8e-08 Score=98.92 Aligned_cols=96 Identities=26% Similarity=0.423 Sum_probs=74.8
Q ss_pred EEEEeC-ChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccc
Q 010966 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (496)
Q Consensus 150 V~VIGa-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (496)
|+|||+ |.||.++|..++..| .+|+++|++++.++.....+++.... . ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~------------~-~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEP------------L-ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhh------------c-cCcEEEECCchHHH
Confidence 689999 999999999999999 69999999998877755544332211 0 1235666777 688
Q ss_pred ccCCCEEEE--------------eccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 224 ~~~aDlVIe--------------av~e~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
+++||+||+ .+.++..+++++.+++++++ +++++.
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 999999999 56778889999999999998 555443
No 172
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.79 E-value=1.5e-07 Score=95.31 Aligned_cols=166 Identities=17% Similarity=0.081 Sum_probs=102.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcce
Q 010966 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (496)
||+|||+|.||.++|..++.+| ++|.+|.+ +++..+. ++.. .+....-+. -...+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~----in~~----~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI----INTT----HENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH----HHhc----CCCccccCC--CcCCCCe
Confidence 6999999999999999999999 99999998 4433222 1111 000000000 0123467
Q ss_pred ecccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH--------HHHHh-hhcCCCeeeeccc
Q 010966 216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLIGE-RTYSKDRIVGAHF 285 (496)
Q Consensus 216 ~~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~--------~~la~-~~~~~~r~ig~hf 285 (496)
+.++|++ .+++||+||.+||.+ .-+.++.++.++++++.+++|.+-++.. +++.+ .+..+ +..+
T Consensus 71 ~at~dl~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~--~~~l-- 144 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIPHQ--FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIP--CGVL-- 144 (342)
T ss_pred EEECCHHHHHhcCCEEEEECChH--HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCC--eEEe--
Confidence 7788875 579999999999965 4678899999999888888877655543 33322 23221 1110
Q ss_pred cCcC------CCCCeEEEEeCCCCC--HHHHHHHHHHHHHcCCceEEecCccc
Q 010966 286 FSPA------HVMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG 330 (496)
Q Consensus 286 ~~P~------~~~~lveiv~~~~t~--~e~~~~~~~l~~~lGk~~v~v~d~~G 330 (496)
.-|. ...|...++.+...+ .+....++.+|..--..+....|..|
T Consensus 145 sGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 145 SGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred eCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 0121 123444455554222 77888888888765555555566555
No 173
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.77 E-value=1.3e-07 Score=94.77 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=97.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
+||+|||+|.||+.+|..|+.+|++|++++++++.++...+ .|... ..+ ....+..+++.+.+++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~ 66 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLEDGE---ITVPVLAADDPAELGP 66 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCcccCCc---eeecccCCCChhHcCC
Confidence 48999999999999999999999999999998877655321 12100 000 0011223344444589
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeee-eccc-----cCcCC---CC-CeE
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHF-----FSPAH---VM-PLL 295 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~i-g~hf-----~~P~~---~~-~lv 295 (496)
+|+||.|++... ...+++++.+.+.++++|++...++.. +.+...+.. .+++ |..+ ..|-. .. ..+
T Consensus 67 ~d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~ 143 (304)
T PRK06522 67 QDLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRL 143 (304)
T ss_pred CCEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCE
Confidence 999999998542 467888999888888777777667764 445554432 2333 2211 12211 11 112
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
.+-..+. +.+..+.+.+++...|.......|
T Consensus 144 ~ig~~~~-~~~~~~~l~~~l~~~~~~~~~~~d 174 (304)
T PRK06522 144 KIGEPDG-ESAAAEALADLLNAAGLDVEWSPD 174 (304)
T ss_pred EEeCCCC-CcHHHHHHHHHHHhcCCCCCCChH
Confidence 2222222 224466677777777765444444
No 174
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=5e-07 Score=84.25 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=123.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc----cc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ES 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 223 (496)
|+|++||+|.||..|+..|...||+|+.||+|+++.+.+.. .|. + ..+++ ..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~ga-~------------~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EGA-T------------GAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cCC-c------------cccCHHHHHHh
Confidence 57999999999999999999999999999999998877542 231 1 12222 23
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc--cHHHHHhhhcCCCeeeeccccCc-----CCC--CCe
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSP-----AHV--MPL 294 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~--~~~~la~~~~~~~r~ig~hf~~P-----~~~--~~l 294 (496)
+...-.|-.+||-. ++..+++.++.+++.++.+|+....+. ....-+..+. -.|+||+.- ++. ...
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~----~kgi~flD~GTSGG~~G~~~G~ 131 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLA----EKGIHFLDVGTSGGVWGAERGY 131 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHH----hcCCeEEeccCCCCchhhhcCc
Confidence 45557788888854 357789999999999888887544332 2222233332 248898741 111 112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCC---ceEEecC-cccch----hhchHHHH---HHHHHHHHHcC---CCHHHHHHH
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLLVERG---TDLYLIDRA 360 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk---~~v~v~d-~~G~i----~nril~~~---~~ea~~l~~~g---~~~~~ID~a 360 (496)
.-+|.+ +.+.++.+.++|+.+-- -..+++. ..|.+ -|-|=+.+ +.|.+.++++. .+.+++-+.
T Consensus 132 ~lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 132 CLMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred eEEecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 223444 78999999999998754 2345554 34543 35555444 57888888764 388888888
Q ss_pred HH
Q 010966 361 IT 362 (496)
Q Consensus 361 ~~ 362 (496)
++
T Consensus 209 W~ 210 (300)
T COG1023 209 WN 210 (300)
T ss_pred Hh
Confidence 87
No 175
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.75 E-value=1.6e-07 Score=94.18 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=98.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCccc-cc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES-FK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~-~~ 225 (496)
|||+|||+|.||..+|..|+++|++|+++++ ++.++... +.|. +.....+.. -.....++.+. ..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAV-VPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEE-ecceeecCHHHccC
Confidence 4899999999999999999999999999999 66655432 1121 000000000 01112334443 48
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeee-ecccc-----CcCCC----CCe
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAHV----MPL 294 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~i-g~hf~-----~P~~~----~~l 294 (496)
++|+||.|++... -.++++++.+.+.++++|++...++.. +.+...++. .+++ |+.++ .|-.. ...
T Consensus 68 ~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 8999999998642 356778888888888877766667753 455555432 2333 33332 22111 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCc
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 328 (496)
+.+-..+....+..+.+.+++...|.......|.
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di 178 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENI 178 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHH
Confidence 1121222333456667778888888665555553
No 176
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=7.8e-07 Score=88.63 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=127.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc---
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--- 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--- 223 (496)
...|+|||+|+||+.+|.+++++|++|.+|+|+.++.+...+. .+ ...++.+..++++
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~---------~~k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RA---------KGKNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Cc---------cCCCccccCcHHHHHH
Confidence 3579999999999999999999999999999999998876532 11 0123455555543
Q ss_pred -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhh-cCCCeeeeccccCc---CCCCCeEE
Q 010966 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT-YSKDRIVGAHFFSP---AHVMPLLE 296 (496)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~-~~~~r~ig~hf~~P---~~~~~lve 296 (496)
++.---|+.+|..- .....++++|.+++.++.|++....+ .....-...+ ...-.|+|+----. +..+| .
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP--S 140 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP--S 140 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC--C
Confidence 45667777777543 22357889999999999988764433 3332222333 33345666543211 11111 2
Q ss_pred EEeCCCCCHHHHHHHHHHHHHcCCc----e--EEec-Ccccchh----hchHH---HHHHHHHHHHHcC--CCHHHHHHH
Q 010966 297 IVRTNQTSPQVIVDLLDIGKKIKKT----P--IVVG-NCTGFAV----NRMFF---PYTQAAFLLVERG--TDLYLIDRA 360 (496)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~----~--v~v~-d~~G~i~----nril~---~~~~ea~~l~~~g--~~~~~ID~a 360 (496)
+||| .+++..+.+.+++..+... | .+++ ++.|.++ |-|=+ .++.|+..++.++ .|.++|-.+
T Consensus 141 iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~v 218 (473)
T COG0362 141 IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEV 218 (473)
T ss_pred cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4455 5889999999999876422 2 2334 4566543 55543 3579999998765 499999988
Q ss_pred HHhcC
Q 010966 361 ITKFG 365 (496)
Q Consensus 361 ~~~~g 365 (496)
+..++
T Consensus 219 F~~WN 223 (473)
T COG0362 219 FEEWN 223 (473)
T ss_pred HHHhc
Confidence 77544
No 177
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.74 E-value=6.1e-09 Score=94.89 Aligned_cols=93 Identities=24% Similarity=0.324 Sum_probs=64.9
Q ss_pred cccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCCC
Q 010966 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (496)
Q Consensus 2 iltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 81 (496)
.+.+|.++|+||++|||||.|||.++|++++.+|++++.++ +|.
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~k-SP~----------------------------------- 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAK-SPT----------------------------------- 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhc-ChH-----------------------------------
Confidence 46789999999999999999999999999999999999987 343
Q ss_pred cHHHHHHHHHHhhcCCHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 82 HPIVCIDVVEAGVVSGPRAGLQ-KEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 82 A~~~~k~~i~~~~~~~~~~~l~-~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
|...+|.+++.. ..++ .++. ..-.+-.-...|++++|+..+|++||++-
T Consensus 225 AlR~LK~Afnad-~DGl-aG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pd 274 (282)
T COG0447 225 ALRMLKAAFNAD-CDGL-AGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPD 274 (282)
T ss_pred HHHHHHHHhcCC-Cchh-hHHHHhcccceEEEEechhhhhhHHHHhhccCCC
Confidence 111233333321 1121 1211 11112222457999999999999999863
No 178
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.73 E-value=2.6e-07 Score=86.15 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=82.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
+||+|||+ |.||.-++..|.++|+.|++ .+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence 48999999 99999999999999999862 36
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCC-C----CeEEEEeCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-M----PLLEIVRTN 301 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~-~----~lveiv~~~ 301 (496)
||+||.|+|.+. -.++++++. .+|+..+|... .+.+. ..+|+|.||+..+.. . ..+-+ ..+
T Consensus 32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCCHHH--HHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 899999999653 335555543 25777777664 23222 347999999865332 1 22333 466
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEec
Q 010966 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 788888999999988 77777764
No 179
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.71 E-value=2.3e-07 Score=93.52 Aligned_cols=170 Identities=10% Similarity=0.118 Sum_probs=102.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCcccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESF 224 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~ 224 (496)
+.+||+|||+|.||+.+|..|+++|++|+++.+++. +... +.|. +....-......+...++.+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhc
Confidence 457999999999999999999999999999999863 2211 1121 0000000000112223344456
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCCCeeee-cccc-----CcCC---C-CC
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHFF-----SPAH---V-MP 293 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~~r~ig-~hf~-----~P~~---~-~~ 293 (496)
..+|+||.|++... + .+++..+.+.+.+++++++...++... .+...++ ++++++ ..++ .|.. . ..
T Consensus 71 ~~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence 78999999998553 2 467888888888888887777788664 4555554 334443 2222 2321 1 11
Q ss_pred eEEEEeCCCCC-----HHHHHHHHHHHHHcCCceEEecCcccc
Q 010966 294 LLEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (496)
Q Consensus 294 lveiv~~~~t~-----~e~~~~~~~l~~~lGk~~v~v~d~~G~ 331 (496)
-+.+-..+..+ .+..+.+.++++..|.......|....
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~ 190 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQA 190 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHH
Confidence 12222222222 466777888889988877666664443
No 180
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.66 E-value=3.5e-08 Score=92.55 Aligned_cols=104 Identities=25% Similarity=0.326 Sum_probs=71.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-- 221 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 221 (496)
.+|+|||+|.||+.+|..|++.|+ +|+++|.+ ++.+.+..... ...|....+.....+.++.+..+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~-------~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKA-------SQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCCh-------hhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999999999999 69999999 65554421000 011222222223333333222221
Q ss_pred -----------ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966 222 -----------ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 222 -----------~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
+.++++|+||+| .++++.|..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 136789999999 6999999999999988877777665
No 181
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.64 E-value=4.9e-07 Score=80.02 Aligned_cols=100 Identities=28% Similarity=0.393 Sum_probs=68.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cceecccCcc
Q 010966 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYE 222 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~ 222 (496)
+||+|||+ |..|..+|..+...++ +++++|++++.++.....+.+.. ... .......+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~---------------~~~~~~~~i~~~~~~ 65 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHAS---------------APLPSPVRITSGDYE 65 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHH---------------HGSTEEEEEEESSGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhh---------------hhccccccccccccc
Confidence 59999999 9999999999999876 89999999987665444333221 111 1122236789
Q ss_pred cccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 223 SFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 223 ~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
++++||+||.+.-. +..+.+++...+.++. ++.+++..|.
T Consensus 66 ~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtN 119 (141)
T PF00056_consen 66 ALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTN 119 (141)
T ss_dssp GGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SS
T ss_pred ccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCC
Confidence 99999999987621 2335556666788887 4554443333
No 182
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.61 E-value=1.4e-06 Score=84.53 Aligned_cols=167 Identities=17% Similarity=0.111 Sum_probs=116.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccCCCEEEEeccCChHHHHHHHHHH
Q 010966 170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (496)
Q Consensus 170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l 248 (496)
-++|+++++++++++...+. .| +..+.+. +.+++||+||.||+ +..-.+++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 36899999999886553221 01 1223333 34678999999998 44567888888
Q ss_pred HhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEEE-EeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 249 ~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lvei-v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
...+.++.+|+|.++++++++|...++...+++.++|+.|......+.. ..++.++++..+.+..+|..+|+...+ .+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence 8777778899999999999999988865567999999988877665554 467788899999999999999976644 33
Q ss_pred c--ccc-hhhchH---HHHHHHHH--HHHHcCCCHHHHHHHHH
Q 010966 328 C--TGF-AVNRMF---FPYTQAAF--LLVERGTDLYLIDRAIT 362 (496)
Q Consensus 328 ~--~G~-i~nril---~~~~~ea~--~l~~~g~~~~~ID~a~~ 362 (496)
. ..+ .+.-.. ..++.+++ ..+..|+++++..+...
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 111 011111 12233443 24567898888887775
No 183
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.55 E-value=1.3e-07 Score=85.31 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=76.0
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|++||.||+++||+..|||.+|||+++|..++..+++.+-..+.. .+.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra-------------------v~s------------- 235 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA-------------------VIS------------- 235 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-------------------HHH-------------
Confidence 689999999999999999999999999999999999888765211 111
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
.-|+-......++..+++....+-..+-++-.|.+|+|.+|++||.+.
T Consensus 236 ----lgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 236 ----LGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 344555555556666777777777777788889999999999998654
No 184
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.53 E-value=3.1e-07 Score=92.89 Aligned_cols=100 Identities=17% Similarity=0.058 Sum_probs=77.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||+|.||+++|..+...|++|++||++++..... +..+.++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 489999999999999999999999999999997542110 0122344 35789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~ 275 (496)
||+|+.++|...+.+..+.+++.+.+++++++++.+-+ +.-..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999999887877778888889999988765544 34567777774
No 185
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.53 E-value=8.8e-06 Score=76.63 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=100.2
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCcccccCCCEEEEeccCC
Q 010966 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESFKDVDMVIEAIIEN 237 (496)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aDlVIeav~e~ 237 (496)
|+.+|..++.+||+|++.|.|.+-.+.. .+++.-..| +.. ++|.++++.+.+.|.-.|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence 8899999999999999999998765542 122222223 223 44568899999999988754
Q ss_pred hHHHHHHHHHHHhhCCCCeeEeccCCcccHH----HHHhhhcCCCeeeeccccCcCCC----CCeEEEEeCCC------C
Q 010966 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTNQ------T 303 (496)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~~~~~----~la~~~~~~~r~ig~hf~~P~~~----~~lveiv~~~~------t 303 (496)
. ..-.+.++|.++++.+++|+ ||-+.|+- .+...+..+.+-+|+..|.|... ..-.-++.+.. .
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 2 23367788999999999885 45455443 44445555656778777766432 11111333322 3
Q ss_pred CHHHHHHHHHHHHHcCCceEEec
Q 010966 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+++.+++..++++++||.++++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 68899999999999999999875
No 186
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.53 E-value=5.7e-06 Score=82.81 Aligned_cols=166 Identities=18% Similarity=0.167 Sum_probs=103.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
|||+|+|+|.||+-++..|+++|++|+++-+++. +++.. +.|..-...............+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999988998888875 44432 22321110000011112223344567799
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHH-HHhhhcCCCeeeeccccC-----cCCC---C-CeEEE
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGAHFFS-----PAHV---M-PLLEI 297 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~-la~~~~~~~r~ig~hf~~-----P~~~---~-~lvei 297 (496)
|+||.++... .-.+.+..+.++++++++|.+.-.++...+ +.+..+....+.|+-+.. |.+. . .-+.+
T Consensus 69 Dlviv~vKa~--q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVKAY--QLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEeccc--cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 9999998533 345788999999999998888777886655 555444333355554442 2111 1 12222
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
-......++..+.+.+.|+..|....+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 222333446788888888777766655444
No 187
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.50 E-value=6.4e-07 Score=89.82 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=66.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+||+|||+|.+|.++|..++..|. +++|+|++++.++.....+.+.. ... ....++.++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 599999999999999999999886 79999999876655433332211 000 012466567899999
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCe
Q 010966 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHC 256 (496)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~ 256 (496)
+||+||.+.-. +..+.+++...+.++.+...
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~ 115 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI 115 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 99999986521 22345556667888865444
No 188
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.49 E-value=7.6e-07 Score=89.36 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=67.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+||+|||+|.+|+++|..++..| ++|+++|++++.++.....+.+... ..+ ....+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~---~~~---------~~~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALA---FLP---------SPVKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhh---ccC---------CCeEEE-cCCHHHhC
Confidence 48999999999999999999999 5899999999887665444332210 000 001122 35677899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
+||+||.++.. +..+.+++...+.++.+ ++++.
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999998743 33345666677888766 44443
No 189
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=2.4e-07 Score=92.09 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=68.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |.
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 224 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-PF---------------------------------- 224 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-HH----------------------------------
Confidence 5799999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 010966 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~-~~~~~l~~E~~~~~~l~-~s~~ 117 (496)
+...+|+.++..... ++++++..|...+.... ++++
T Consensus 225 -a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 225 -GLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred -HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 234678888877665 68999999998888877 6776
No 190
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.45 E-value=1.8e-07 Score=85.28 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=83.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCc----hHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhh
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~----~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (496)
+|+||+.+++.||..+||||.||... ...+.|+++|+++.... |.
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g-Pi------------------------------ 236 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG-PI------------------------------ 236 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC-ch------------------------------
Confidence 58999999999999999999999765 56667888888888753 43
Q ss_pred CCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 010966 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (496)
Q Consensus 77 ~~~~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~ 132 (496)
|...+|-+|+.+.+.++..++..|..-+++..-+.+--+++.+|.+||++.
T Consensus 237 -----avr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~ 287 (291)
T KOG1679|consen 237 -----AVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPE 287 (291)
T ss_pred -----hhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCC
Confidence 344788899999999999999999999999999999999999999999765
No 191
>PLN02602 lactate dehydrogenase
Probab=98.40 E-value=1.1e-06 Score=89.29 Aligned_cols=99 Identities=26% Similarity=0.400 Sum_probs=68.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cceecccCccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYES 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 223 (496)
+||+|||+|.+|+++|..++..|. +++|+|++++.++.....+.+.. ..+ ..+..++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence 599999999999999999998887 79999999877665443332211 111 24444567889
Q ss_pred ccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeE-ecc
Q 010966 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL-ASN 261 (496)
Q Consensus 224 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il-~sn 261 (496)
+++||+||.+.-. +..+.+++...+.+++++..++ +||
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999988521 2234456666777776554433 344
No 192
>PRK15076 alpha-galactosidase; Provisional
Probab=98.40 E-value=1.6e-06 Score=90.65 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=54.9
Q ss_pred ceEEEEEeCChhhHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966 147 VKKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (496)
|+||+|||+|.||.+.+. .++ ..|.+|+++|+++++++.+...++..+... + ...+++.++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 369999999999966655 333 346799999999999886554444333221 1 1135777888
Q ss_pred -cccccCCCEEEEecc
Q 010966 221 -YESFKDVDMVIEAII 235 (496)
Q Consensus 221 -~~~~~~aDlVIeav~ 235 (496)
.+++++||+||+++-
T Consensus 69 ~~eal~dADfVv~ti~ 84 (431)
T PRK15076 69 RREALQGADYVINAIQ 84 (431)
T ss_pred HHHHhCCCCEEeEeee
Confidence 578999999999873
No 193
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.39 E-value=1.5e-06 Score=87.15 Aligned_cols=97 Identities=28% Similarity=0.405 Sum_probs=66.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
|||+|||+|.+|.++|..++..| .+|+++|++++.++.....+.+. ..... . ..+ .++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~-----~-~~i-~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK-----P-VRI-YAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC-----C-eEE-eeCCHHHhC
Confidence 48999999999999999999999 58999999988765322221110 00000 0 122 356788899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeE
Q 010966 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (496)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il 258 (496)
+||+||.+++. +..+-+++..++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999864 3334556667788877555444
No 194
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=3.2e-07 Score=88.15 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=60.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+++|++++|+||+++||||+|+|++++.+.+.+++++++..+ |.
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~~---------------------------------- 200 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN-MG---------------------------------- 200 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC-HH----------------------------------
Confidence 4789999999999999999999999999999999999999862 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~ 109 (496)
+...+|++++.....++.++++.|...|
T Consensus 201 -a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 201 -AHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 3347888888877777788887777654
No 195
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.37 E-value=1.5e-07 Score=93.02 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=69.3
Q ss_pred ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCC---cchhHhhhccCchhHHHhhhhhhhhCCCCccccch
Q 010966 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (496)
Q Consensus 329 ~G~i~nril~~~~~ea~~l~~~g~--~~~~ID~a~~-~~g~p---~GPf~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~ 402 (496)
+--++++++.+++|||+++++||+ ++.++|.+.. |+||| .|||.|.|..|++.++..++.+.. +.|+.+
T Consensus 293 ~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~ 367 (380)
T KOG1683|consen 293 DEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQL 367 (380)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHH
Confidence 345899999999999999999998 9999999998 99999 499999999999999999988765 678888
Q ss_pred HHHHHhcC
Q 010966 403 IPIMQEDK 410 (496)
Q Consensus 403 l~~~~~~G 410 (496)
+.++..+|
T Consensus 368 l~~~a~~~ 375 (380)
T KOG1683|consen 368 LKDHAKSG 375 (380)
T ss_pred HHHHHhhh
Confidence 88888775
No 196
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.35 E-value=1.7e-06 Score=85.69 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=69.6
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|+||++|||||+|+|++++.+++.+++++++.. |.
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~~---------------------------------- 228 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--LN---------------------------------- 228 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--cc----------------------------------
Confidence 579999999999999999999999999999999999999964 22
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHh
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE-TCKSLVHIFFA 127 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~-~a~~~i~aF~~ 127 (496)
++..+|+..+.....++++.++.|...+..++++. ..++-+..|..
T Consensus 229 -~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 229 -GWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 22345555555555678889999887777655544 45666777653
No 197
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.35 E-value=2.9e-06 Score=86.03 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=74.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||.|.||..+|..+...|++|+.||+++..... . ..+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CEe-cCHHHHHhh
Confidence 69999999999999999999999999999998643211 0 111 111 234 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~ 275 (496)
||+|+.++|-..+.+.-+-++..+.++++++++..+.+ +.-..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 99999999988877766667777889999988744433 34456777764
No 198
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.33 E-value=8.7e-07 Score=91.40 Aligned_cols=88 Identities=14% Similarity=0.253 Sum_probs=70.4
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|+|||++++|++|+++||||++||++++ +++.+++.+++..+ |.
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p~---------------------------------- 239 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-PS---------------------------------- 239 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-HH----------------------------------
Confidence 5799999999999999999999999998 67778888887642 21
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~ 126 (496)
+...+|+.+... ..+...++..|...+..++.+++.++.+.+|.
T Consensus 240 -av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 240 -VVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred -HHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 223566666544 23456777888899999999999999999993
No 199
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.31 E-value=9.1e-06 Score=81.56 Aligned_cols=172 Identities=14% Similarity=0.041 Sum_probs=99.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
+||+|||+|.||+-+|..|+++|++|+++++..+.++...+ +.|. +.... ....-++. ..+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccc
Confidence 58999999999999999999999999999998776654321 1121 10000 00000011 111233467
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCCCeeeecccc-----CcCCC---CCeEEE
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFF-----SPAHV---MPLLEI 297 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~~r~ig~hf~-----~P~~~---~~lvei 297 (496)
+|+||.|+... + -.+.++.+.+++.+++++++...++... .+...++...-+.|..++ .|-+. .... +
T Consensus 71 ~D~viv~vK~~-~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~-~ 147 (305)
T PRK05708 71 IHRLLLACKAY-D-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF-T 147 (305)
T ss_pred cCEEEEECCHH-h-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE-E
Confidence 89999999543 2 3367788999999999888888887654 455555432223333332 33211 1111 1
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCceEEecCcccchhhc
Q 010966 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR 335 (496)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~i~nr 335 (496)
.-|.. +.+..+.+.+++...|.......|..+.+...
T Consensus 148 ~~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~K 184 (305)
T PRK05708 148 WLGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRK 184 (305)
T ss_pred EEcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHH
Confidence 12221 22345566677777676555444544443333
No 200
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.30 E-value=2.4e-06 Score=84.56 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=86.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++|+|||.|.||.++|..|...|++|+++|+.....+.+. ..| ....+-.+.++.|
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~A 72 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRTA 72 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhcC
Confidence 6899999999999999999999999999987643322211 112 1112222457899
Q ss_pred CEEEEeccCChHHHHHHH-HHHHhhCCCCeeEeccCCcccHHHHHhhhcCCC--eeeeccccCcCC----------CCCe
Q 010966 228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMPL 294 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~--r~ig~hf~~P~~----------~~~l 294 (496)
|+|+.++|. .+.+ .++ .++.+.++++++|+- +-+..+.- ..+..|. .++=+-|-.|-+ ..|.
T Consensus 73 DVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~f-~hgfni~~--~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~ 147 (335)
T PRK13403 73 QVVQMLLPD-EQQA-HVYKAEVEENLREGQMLLF-SHGFNIHF--GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPA 147 (335)
T ss_pred CEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEEE-CCCcceec--CceeCCCCCeEEEECCCCCChHHHHHHHcCCCcee
Confidence 999999996 4444 555 568888999987752 22333310 0111111 122222222222 1233
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP 322 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~ 322 (496)
+.-|. ...+-.+.+.+..+...+|...
T Consensus 148 l~av~-qd~sg~a~~~ala~a~~iG~~r 174 (335)
T PRK13403 148 LVAVH-QDATGTALHVALAYAKGVGCTR 174 (335)
T ss_pred EEEEE-ECCCCcHHHHHHHHHHHcCCCc
Confidence 32222 2334456788888889988763
No 201
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.30 E-value=4.4e-06 Score=79.06 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=112.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
++|++||+|.|-.+|+..+...|. +++.+-.+......- ....| .-+..++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcCC------------ceeeechHHH
Confidence 479999999999999999999986 455554422211110 00111 1223444667
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeEE-EEeCCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ 302 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~~ 302 (496)
++.+|+++.++. +.+...++.++...+..+.|+.|...+.+++.+...+..+.|++..+++.|........ +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 889999999983 44555666776665667779999999999999999998778999999999988776666 457778
Q ss_pred CCHHHHHHHHHHHHHcCCce
Q 010966 303 TSPQVIVDLLDIGKKIKKTP 322 (496)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~ 322 (496)
...+..+.+..++..+|+..
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 88888899999999999743
No 202
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.29 E-value=3.1e-06 Score=84.67 Aligned_cols=96 Identities=24% Similarity=0.383 Sum_probs=67.5
Q ss_pred EEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
|+|||+|.+|+++|..++..| .+++++|++++.++....++.+.... . ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~------~-------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF------L-------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccc------c-------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 58999999998876654443322110 0 01234445668899999
Q ss_pred CEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 228 DlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
|+||.++.. +..+.+++..++.+++ |+++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999998742 2334556667788887 455443
No 203
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.27 E-value=5.1e-06 Score=83.54 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=65.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+||+|||+|.+|..+|..++..|+ +++++|++++.++.....+.+... .. ....+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~------~~-------~~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP------FT-------SPTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc------cc-------CCeEEE-eCCHHHhC
Confidence 599999999999999999999998 899999998877654444332210 00 001233 46788999
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeE
Q 010966 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (496)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il 258 (496)
+||+||.+.-. +..+.+++..++.++.+ ++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~v 118 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIF 118 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEE
Confidence 99999987521 33344556666777655 4443
No 204
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.26 E-value=1.5e-06 Score=87.07 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=40.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~ 42 (496)
|+|||++++|+||+++||||+|||++++++++.++|++++..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999986
No 205
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.25 E-value=2.3e-06 Score=76.73 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=71.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
++|+|||+|.||.+++..+...| ++|+++|++++..+...+.+.. .+ + ... ..+. +.++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~-~~~~~~~~~ 80 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIA-YLDLEELLA 80 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------cee-ecchhhccc
Confidence 58999999999999999999986 7899999999877654332110 00 0 011 1222 3378
Q ss_pred CCCEEEEeccCChH-HHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhc-CCCeeeecccc
Q 010966 226 DVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKDRIVGAHFF 286 (496)
Q Consensus 226 ~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~-~~~r~ig~hf~ 286 (496)
++|+||.|+|.... +....+. ...+++++++...++....+.+.+... ...+++..|.+
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~ 141 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEM 141 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHH
Confidence 99999999987653 1111111 123567777765544333234444432 22345554443
No 206
>PRK07574 formate dehydrogenase; Provisional
Probab=98.24 E-value=1.2e-05 Score=82.57 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=74.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.||..+|..+...|++|+.||++....+... ..| ++...+++ .++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 5899999999999999999999999999999763211100 001 11223443 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~ 275 (496)
||+|+.++|-..+.+.-+=++..+.++++++|+..+.+ +.-..+.+.+.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 99999999998877665546677888999988744333 33456777764
No 207
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.24 E-value=3.1e-06 Score=75.26 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=59.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++ .+.| +...+-.|+++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~G-------------f~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADG-------------FEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCC-------------CeeccHHHHHhh
Confidence 6899999999999999999999999999998876 33332 2333 222333466899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhCCCCeeEec
Q 010966 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILAS 260 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~s 260 (496)
+|+|+..+|+. .-.++| ++|.+.++++..+.-
T Consensus 61 aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 61 ADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp -SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEEE
T ss_pred CCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEEe
Confidence 99999999965 345777 789999999997753
No 208
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.22 E-value=9.1e-06 Score=81.57 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=75.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||.|.||..+|..+...|++|+.||++++..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 689999999999999999999999999999875431100 000011233 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~ 275 (496)
||+|+.++|...+.+.-+-++..+.++++++++... ..+.-+.|.+.+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 999999999998877776677778889999886433 2345567777774
No 209
>PLN03139 formate dehydrogenase; Provisional
Probab=98.22 E-value=1.8e-05 Score=81.29 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=86.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.||..+|..+...|++|+.||++....+... +.| +....+++ .+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211100 011 11233454 4689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC-CCeeeecccc--CcC------CCCCeE
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA------HVMPLL 295 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~-~~r~ig~hf~--~P~------~~~~lv 295 (496)
||+|+.++|...+.+.-+-+++.+.++++++|+..+-+ +.-+.+.+.+.. .-...++--| .|. +.++-+
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv 335 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH 335 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence 99999999988887766656788889999988744333 334567777642 2223344333 232 235666
Q ss_pred EEEeCC
Q 010966 296 EIVRTN 301 (496)
Q Consensus 296 eiv~~~ 301 (496)
.+.|+-
T Consensus 336 ilTPHi 341 (386)
T PLN03139 336 AMTPHI 341 (386)
T ss_pred EEcccc
Confidence 666653
No 210
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.22 E-value=3.8e-06 Score=83.20 Aligned_cols=99 Identities=28% Similarity=0.394 Sum_probs=65.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
+||+|||+|.+|+++|..++..++ +++++|++++.++.-...+.+... ......++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 489999999999999999987764 899999996654432222211100 000112333334589999
Q ss_pred CCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966 226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 226 ~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
++|+|+.+. |. +..+.+++-+++.+.++ +.++.
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivl 115 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVL 115 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEE
Confidence 999999886 32 34466666777887776 45443
No 211
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.18 E-value=6.8e-06 Score=82.22 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=52.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh---c-ceecccCcc
Q 010966 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI---S-LLTGVLDYE 222 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~---~-~i~~~~~~~ 222 (496)
||+|||+|.+|.++|..++..|. +++|+|++++.++.....+.+.. ... . ++. +.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~---------------~~~~~~~~~i~-~~~y~ 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT---------------ALTYSTNTKIR-AGDYD 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh---------------ccCCCCCEEEE-ECCHH
Confidence 79999999999999999999887 79999999877655333322211 111 1 233 46789
Q ss_pred cccCCCEEEEec
Q 010966 223 SFKDVDMVIEAI 234 (496)
Q Consensus 223 ~~~~aDlVIeav 234 (496)
++++||+||.+.
T Consensus 65 ~~~~aDivvita 76 (307)
T cd05290 65 DCADADIIVITA 76 (307)
T ss_pred HhCCCCEEEECC
Confidence 999999999876
No 212
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.16 E-value=1.7e-05 Score=79.20 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=87.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.||..+|..+...|++|+.||++... .+. . ....+++ .+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence 68999999999999999888789999999987421 010 0 0012343 4689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhcC-CCeeeecccc--CcC---CCCCeEEEE
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEIV 298 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~~-~~r~ig~hf~--~P~---~~~~lveiv 298 (496)
||+|+.++|...+.+.-+-++..+.++++++++..+. .+.-..+.+.+.. .....++--| .|. +..+-+.+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 9999999998887766555667777899998874332 2344677777743 2333444333 332 234666677
Q ss_pred eC-C-CCCHHHHHH
Q 010966 299 RT-N-QTSPQVIVD 310 (496)
Q Consensus 299 ~~-~-~t~~e~~~~ 310 (496)
|+ . .++++..+.
T Consensus 254 PHi~g~~t~e~~~~ 267 (303)
T PRK06436 254 PHVAGGMSGEIMQP 267 (303)
T ss_pred CccccccCHHHHHH
Confidence 77 2 245554443
No 213
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.15 E-value=4.2e-06 Score=84.84 Aligned_cols=101 Identities=16% Similarity=0.048 Sum_probs=69.7
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (496)
++|+|||+|.||.++|..++ ..|++|+.||+++..... .+ +...++++ .++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence 58999999999999999994 468899999998643210 00 11233443 478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhc
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY 275 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~ 275 (496)
+||+|+.++|.....+.-+=.++.+.++++++|+..+.+.. ...+.+.+.
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999998776554222456677899998875544433 346666663
No 214
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.12 E-value=4.9e-06 Score=76.81 Aligned_cols=98 Identities=18% Similarity=0.090 Sum_probs=81.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
+.+|++.++|.||++.|||.+|+|+ ++|++.+..+|+.++.+ +|.
T Consensus 191 lafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~K-Spv--------------------------------- 236 (292)
T KOG1681|consen 191 LAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASK-SPV--------------------------------- 236 (292)
T ss_pred HHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccC-Cce---------------------------------
Confidence 3589999999999999999999986 67999999999999987 354
Q ss_pred CCcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC
Q 010966 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (496)
Q Consensus 80 ~pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr~~~~~ 134 (496)
|+..+|+.+..+.+.+.+++|.+-...-...+.|+|.-..+.+-++|+++..|
T Consensus 237 --aVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tf 289 (292)
T KOG1681|consen 237 --AVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTF 289 (292)
T ss_pred --eeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 33468888989999999999998877777777788888888888887665544
No 215
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.12 E-value=6.9e-06 Score=73.36 Aligned_cols=114 Identities=22% Similarity=0.213 Sum_probs=73.7
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCc-ccccCC
Q 010966 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDY-ESFKDV 227 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (496)
|+|+|+|.||.-+|..|+++|++|+++++++ .++... +.|. ++..+-+..........+. +....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 655422 1221 1110000000011111111 246789
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH-HHHhhhcCC
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSK 277 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~-~la~~~~~~ 277 (496)
|+||.|+.... -.+++..+.+++.+++.|++...++... .+.+..+.+
T Consensus 69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~ 117 (151)
T PF02558_consen 69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP 117 (151)
T ss_dssp SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS
T ss_pred cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC
Confidence 99999996432 3467888999999998777777777754 455555443
No 216
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.11 E-value=9e-06 Score=81.64 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=76.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (496)
+||+|||+ |..|..++..++..|+ +|+++|+++ +.++.....+.+. ....+ ...+++.+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~---~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDA---LAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhc---hhccC---------CCcEEEECCCHH
Confidence 58999998 9999999999999997 499999965 4433322222110 01111 012466666788
Q ss_pred cccCCCEEEEecc--C----C-h-------HHHHHHHHHHHhhCCCCeeEeccCCcccHHH--HHhhhcC-CCeeeec
Q 010966 223 SFKDVDMVIEAII--E----N-V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (496)
Q Consensus 223 ~~~~aDlVIeav~--e----~-~-------~~k~~v~~~l~~~~~~~~il~sntS~~~~~~--la~~~~~-~~r~ig~ 283 (496)
++++||+||.++. . + . .+-+++...+.+.++ +.++...+++.++.. +....+. +.|++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999983 1 1 1 334555666777764 666666666665432 2222232 3566665
No 217
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.03 E-value=4.6e-05 Score=82.06 Aligned_cols=130 Identities=16% Similarity=0.084 Sum_probs=84.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.||+.+|..+...|++|+.||+.... +... +.| +...++++ .+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985221 1100 111 11223443 4689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC-CCeeeecccc--CcC-----CCCCeEE
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLLE 296 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~-~~r~ig~hf~--~P~-----~~~~lve 296 (496)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+ +.-..+.+.+.. .-+..++--| .|+ +..+-|.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 273 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI 273 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence 99999999988776554435566678999988644333 445677777743 2233444433 333 2345566
Q ss_pred EEeCCC
Q 010966 297 IVRTNQ 302 (496)
Q Consensus 297 iv~~~~ 302 (496)
+.|+-.
T Consensus 274 ~TPHia 279 (525)
T TIGR01327 274 ATPHLG 279 (525)
T ss_pred ECCCcc
Confidence 666643
No 218
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.01 E-value=4.6e-05 Score=74.99 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=105.4
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhC--CC-----cEEEEeCCHHHHHH---HHHHHHHHHHHHHHc-CCCCHHHHHhhhc
Q 010966 145 RRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEA---GIGRVRANLQSRVKK-GKMTQEKFEKTIS 213 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~---~~~~i~~~~~~~~~~-g~~~~~~~~~~~~ 213 (496)
+...||+|||+|+||++||..+..+ ++ +|.+|-...+.-.. .-+-|+.. .+. ..+.. -....
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~----heN~KYlpg---~~lP~ 91 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSR----HENVKYLPG---IKLPE 91 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccc----cccccccCC---ccCCC
Confidence 3457999999999999999988764 22 78888776543331 11222211 110 00110 12235
Q ss_pred ceecccCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH----------H-HHHhhhcCCCee-
Q 010966 214 LLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL----------N-LIGERTYSKDRI- 280 (496)
Q Consensus 214 ~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~----------~-~la~~~~~~~r~- 280 (496)
++..++|+ +++.++|++|.++|.. ...+++++|..++++++..+|-+-++.. + -|...++-|-.+
T Consensus 92 NvvAv~dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL 169 (372)
T KOG2711|consen 92 NVVAVPDLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVL 169 (372)
T ss_pred CeEecchHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceee
Confidence 67778887 5688999999999966 4668999999999999988887655442 2 233444444322
Q ss_pred eeccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEecCcccc
Q 010966 281 VGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (496)
Q Consensus 281 ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G~ 331 (496)
.|..+-+-+..-...|-.-+-..+.+.-..+..+|++--..+.++.|..|-
T Consensus 170 ~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~V 220 (372)
T KOG2711|consen 170 MGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGV 220 (372)
T ss_pred cCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHh
Confidence 222221111122233333232223333335777888777777777775553
No 219
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=98.00 E-value=4.9e-05 Score=79.17 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=71.2
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee
Q 010966 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (496)
Q Consensus 147 ~~kV~VIGa-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (496)
.-||+|||+ |.+|..+|..++.. |+ +++++|++++.++...-.+.+... ..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence 359999999 99999999999988 76 899999999987765444332211 1112333
Q ss_pred -cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 217 -~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
.+.+++++++||+||.+.- .+..+.+++...|.++..++++++..+.
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 3467899999999998751 1233455666667775566776654443
No 220
>PRK05442 malate dehydrogenase; Provisional
Probab=98.00 E-value=1.7e-05 Score=80.06 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=67.4
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 010966 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L 214 (496)
Q Consensus 147 ~~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~ 214 (496)
..||+|||+ |.+|.++|..++..|+ +++|+|++++ .++.....+.+... .... .
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 469999998 9999999999988765 7999999653 23322222211110 0111 2
Q ss_pred eecccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966 215 LTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (496)
Q Consensus 215 i~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~ 265 (496)
++ +.+++++++||+||.+.- .+..+.+++..+|.++.++++++...|...
T Consensus 70 i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 70 IT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 33 466899999999998752 123355666677888877777665554433
No 221
>PLN02928 oxidoreductase family protein
Probab=97.97 E-value=5.6e-05 Score=77.10 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=78.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999732211100 00 0000000000000012244 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcCC-Ceeeecccc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFF 286 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~~-~r~ig~hf~ 286 (496)
||+|+.++|-..+.+.-+=++..+.++++++|+...-+ +.-+.|.+.+... -...++--|
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 99999999988776555556677788999988754333 4556777777432 223444444
No 222
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.96 E-value=8.8e-06 Score=77.73 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=40.2
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~ 42 (496)
|++||++++|+||+++||||+|+|++++++++.+++++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999986
No 223
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.95 E-value=2.5e-05 Score=78.64 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=67.9
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ce
Q 010966 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (496)
-||+|||+ |.+|.++|..+...|+ +++|+|+++ +.++.....+.+.. . .... .+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA---------F-----PLLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcc---------c-----cccCCcEE
Confidence 59999998 9999999999998886 799999965 32333222221110 0 0011 23
Q ss_pred ecccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966 216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (496)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~~ 265 (496)
+ +.+++++++||+||.+.- .+..+.+++..++.++.++++++...|...
T Consensus 70 ~-~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 70 T-TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 2 456899999999998751 123356667778888887677666554333
No 224
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.94 E-value=7.3e-05 Score=75.25 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=84.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-cc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 225 (496)
++|||||+|.+|+.+|..+..-|.+|+.||+ .+...... .......+++. ++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 6899999999999999999999999999999 43322210 01122344544 78
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhhhcCC-CeeeeccccC--c------CCCCC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTYSK-DRIVGAHFFS--P------AHVMP 293 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~~~~~-~r~ig~hf~~--P------~~~~~ 293 (496)
.||+|+..+|...+.+.-+=++....++++++++ |++ .+.-..|.+.+... -+-.++-.|. | .+..+
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~p 275 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLP 275 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCC
Confidence 9999999999988866555566667789999775 554 34556777777532 2333444442 2 23345
Q ss_pred eEEEEeC
Q 010966 294 LLEIVRT 300 (496)
Q Consensus 294 lveiv~~ 300 (496)
-|.+.|+
T Consensus 276 nV~~TPH 282 (324)
T COG0111 276 NVILTPH 282 (324)
T ss_pred CeEECCc
Confidence 5556665
No 225
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.94 E-value=6.9e-05 Score=80.75 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=85.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||.|.||..+|..+...|++|+.||++... +... ..| +... ++ +.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999985421 1100 111 1122 34 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhcC-CCeeeecccc--CcC-----CCCCeEE
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLLE 296 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~~-~~r~ig~hf~--~P~-----~~~~lve 296 (496)
||+|+.++|-..+.+.-+-++..+.++++++++..+- .+.-..+.+.+.. .-.-.++--| .|+ +..+-|.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 9999999998877665554667778899998864433 3445677777743 2233444433 232 2345566
Q ss_pred EEeCCC
Q 010966 297 IVRTNQ 302 (496)
Q Consensus 297 iv~~~~ 302 (496)
+.|+-.
T Consensus 275 lTPHia 280 (526)
T PRK13581 275 VTPHLG 280 (526)
T ss_pred EcCccc
Confidence 667643
No 226
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.93 E-value=3e-05 Score=77.53 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=62.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-c-C--
Q 010966 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D-- 220 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 220 (496)
+||+|||+ |.+|+++|..++..|+ +++|+|++ .++...-.+. .+. ....+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~--------~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLS--------HIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhH--------hCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 2221111111 110 01234432 3 2
Q ss_pred cccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 221 YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 221 ~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
++++++||+||.+.- .+..+.+++...+.++. |++++...|.
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtN 118 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISN 118 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 799999999998751 13345556666777774 5665544333
No 227
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.92 E-value=1.3e-05 Score=73.85 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=71.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.+|..+|..+..-|.+|+.||++........ ..+ .. ..+++ .++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------VE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------EE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------ce-eeehhhhcch
Confidence 6899999999999999999999999999999987543110 011 11 23444 4688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhhcC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS 276 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~~~ 276 (496)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+ +.-+.+.+.+..
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 99999999977655444445666778999988754433 445677777743
No 228
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.90 E-value=2.2e-05 Score=79.14 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=65.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--ce
Q 010966 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (496)
.||+|||+ |.+|.++|..++..|. +++|+|++++. ++.....+.+ .. + .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~--------~~-~-----~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELED--------CA-F-----PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhh--------cc-c-----cccCceEE
Confidence 59999999 9999999999998887 79999996532 3321111111 00 0 0111 23
Q ss_pred ecccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
+ +.+++++++||+||.+.- .+..+.+++..+|.++.+++++++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3 456899999999998751 123355666777888876566665444
No 229
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.90 E-value=2.5e-05 Score=73.89 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=80.8
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchhHHHHHHHHHHHHHhhCCCC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
|||.|++++|+||...|||++|++++.+.+.+..-+++++..+ |.
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~-p~---------------------------------- 215 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLS-PE---------------------------------- 215 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCC-HH----------------------------------
Confidence 5789999999999999999999999999999999999988852 32
Q ss_pred CcHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 010966 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (496)
Q Consensus 81 pA~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~s~~a~~~i~aF~~kr 129 (496)
.....|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 216 -sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 216 -SLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 123678888887777888899999999999999999999999998754
No 230
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.88 E-value=0.00011 Score=75.32 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=68.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccee-
Q 010966 148 KKVAILGG-GLMGSGIATALILSNY-------PVILK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (496)
-||+|||+ |.+|.++|..++..|+ .++|+ |++.+.++...-.+.+... ..+..++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 59999999 9999999999998875 24445 8888877654433332210 1112333
Q ss_pred cccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 217 GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 217 ~~~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
.+.+++++++||+||.+. |. +..+.+++...|.++.++++++...|.
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 246789999999999865 11 233555666778887778886655443
No 231
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00035 Score=68.67 Aligned_cols=153 Identities=15% Similarity=0.083 Sum_probs=102.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc--c
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~ 224 (496)
..+|+|||.|.||.-+|..+.++|+.|...||++ -+.+.+++ ..+. .+++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y--------g~~~---------------ft~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY--------GSAK---------------FTLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh--------cccc---------------cccHHHHHh
Confidence 4689999999999999999999999999999987 22222111 1111 122222 2
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEeccCCcccH--HHHHhhhcCCCeeeeccccCcCC-------CCCe
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFSPAH-------VMPL 294 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~~~~--~~la~~~~~~~r~ig~hf~~P~~-------~~~l 294 (496)
+..|+|+.|+.- .-..++++..-.. ++.++|++..+|.... +-+.+-++..-.++..|++..|. ..|+
T Consensus 107 rhpDvvLlctsi--lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTSI--LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEehh--hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 568999999842 1223444544332 5778999988887543 34445566666789999986443 1355
Q ss_pred EEEE---eCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 295 LEIV---RTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 295 veiv---~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
|-+- ......++..+.+.+++...|...|.+.
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 5432 2234458999999999999998887763
No 232
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.86 E-value=3.7e-05 Score=76.99 Aligned_cols=98 Identities=21% Similarity=0.358 Sum_probs=63.4
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-c-cC--c
Q 010966 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (496)
Q Consensus 149 kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (496)
||+|||+ |.+|+++|..++..|+ +++|+|+++ ....++ .+ ..+. ...++.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL--------~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DL--------SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hh--------hcCC--------cCceEEEecCCCchH
Confidence 7999999 9999999999998886 899999987 111111 11 1110 0123443 2 23 7
Q ss_pred ccccCCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966 222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (496)
Q Consensus 222 ~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS~~ 265 (496)
+++++||+||.+. ..+..+.+++...+.++. |++++...|...
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence 8999999999875 224445566667777774 566554433333
No 233
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.81 E-value=6.9e-05 Score=68.76 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=59.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc-----
Q 010966 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL----- 219 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----- 219 (496)
||.|||+|.||+.++..|++.|+ +++++|.+. +.+.+..-. . -.-|....+.....+.++.+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-----~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-----L--SQIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-----H--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999 599999986 333321100 0 0112211222222222221111
Q ss_pred -------Cc-ccccCCCEEEEeccCChHHHHHHHHHHHhh
Q 010966 220 -------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (496)
Q Consensus 220 -------~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~ 251 (496)
+. +.++++|+||+| .++.+.|..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 11 236889999999 67888888777777665
No 234
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.80 E-value=5.8e-05 Score=74.93 Aligned_cols=89 Identities=25% Similarity=0.279 Sum_probs=60.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||+|.||..+|..|...|.+|++++++++..+... +.|. . .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654321 1121 0 001 1122 34689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
+|+||.++|... +. ++..+.+++++++...+|
T Consensus 210 aDiVint~P~~i-i~----~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALV-LT----ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHH-hC----HHHHhcCCCCeEEEEeCc
Confidence 999999998642 11 233445677777765444
No 235
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.77 E-value=0.0001 Score=65.98 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=60.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
+++.|+|.|..|+++|+.|...|.+|+++|++|-.+-++. -.| ....+-.+.+..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5899999999999999999999999999999996543321 112 2222223568899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc---ccHHHHHhh
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER 273 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---~~~~~la~~ 273 (496)
|++|-+.-...-+..+- .+.+++++|+++.++. +.+..+.+.
T Consensus 80 di~vtaTG~~~vi~~e~----~~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEH----FRQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHH----HHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHH----HHHhcCCeEEeccCcCceeEeecccccc
Confidence 99998876543233333 3447899999876653 456666554
No 236
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.76 E-value=0.00012 Score=75.24 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=83.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchh----hcccCC-C-CCc--------------h
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT----LYKTDK-I-EPL--------------G 60 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~----~~~~~~-~-~~~--------------~ 60 (496)
|+|||++++|++|+++||||++||++++.+.+.+++ +++..+ |.... .+.... . ++. .
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999998888887 554431 21111 000000 0 000 0
Q ss_pred hHHHHHH------------HHHHHHHhhCCCCC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 010966 61 EAREIFK------------FARAQARKQAPNLT-HPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHI 124 (496)
Q Consensus 61 ~~~~~~~------------~~~~~~~~~~~~~p-A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~~---s~~a~~~i~a 124 (496)
.....+. ++++....-....| +...+.+.++.+...++.+.+..|...-..++. ++|+.|++++
T Consensus 246 ~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA 325 (381)
T PLN02988 246 TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRA 325 (381)
T ss_pred CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 0001111 11111111111233 456778889988889999999999999999887 6999999998
Q ss_pred HHh-hcCCCC
Q 010966 125 FFA-QRGTSK 133 (496)
Q Consensus 125 F~~-kr~~~~ 133 (496)
-+- |.+.++
T Consensus 326 ~LiDKd~~P~ 335 (381)
T PLN02988 326 ILVDKDKNPK 335 (381)
T ss_pred HhcCCCCCCC
Confidence 765 433333
No 237
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.75 E-value=9.1e-05 Score=73.96 Aligned_cols=95 Identities=24% Similarity=0.299 Sum_probs=62.4
Q ss_pred EEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCCCE
Q 010966 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (496)
Q Consensus 152 VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 229 (496)
|||+|.+|..+|..++..++ +++++|++++.++.....+.+... ... ....++ ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~------~~~------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS------FLP------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc------ccC------CCeEEe-cCCHHHHCCCCE
Confidence 69999999999999998887 799999998766554433322110 000 001233 456899999999
Q ss_pred EEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEec
Q 010966 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS 260 (496)
Q Consensus 230 VIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~s 260 (496)
||.+.-. +..+.+++...+.++. ++++++.
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~viv 111 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLV 111 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 9987621 3334556666777764 5554443
No 238
>PLN00106 malate dehydrogenase
Probab=97.72 E-value=0.00012 Score=73.77 Aligned_cols=93 Identities=20% Similarity=0.332 Sum_probs=60.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccC---
Q 010966 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (496)
.||+|||+ |.+|+.+|..++..++ +++++|+++ ++.....+. .. .. ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~--------~~-------~~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVS--------HI-------NT-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhh--------hC-------Cc-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 111000110 00 00 012322 223
Q ss_pred cccccCCCEEEEec--------------cCChHHHHHHHHHHHhhCCCCeeEe
Q 010966 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 221 ~~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
++++++||+||.+. +.+..+.++++..+.++. ++.++.
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivi 132 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVN 132 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 57899999999875 234446667777788776 445443
No 239
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.72 E-value=0.00022 Score=70.24 Aligned_cols=70 Identities=24% Similarity=0.209 Sum_probs=49.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
.+||+|||+|.||..++..+... +++|. ++|+++++.+...+. .|. ....+++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g~------------~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LRR------------PPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cCC------------CcccCCHHH
Confidence 47999999999999999999863 78875 889998876543211 110 112334433
Q ss_pred -ccCCCEEEEeccCCh
Q 010966 224 -FKDVDMVIEAIIENV 238 (496)
Q Consensus 224 -~~~aDlVIeav~e~~ 238 (496)
+.++|+|++|.|.+.
T Consensus 64 ll~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 64 LATHADIVVEAAPASV 79 (271)
T ss_pred HhcCCCEEEECCCcHH
Confidence 577999999999764
No 240
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=6.1e-05 Score=74.41 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=54.5
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999986543211 22568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
||+||.|++....++..+ ++++++++..+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998664443332 68899887643
No 241
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.70 E-value=0.00018 Score=68.60 Aligned_cols=107 Identities=25% Similarity=0.422 Sum_probs=71.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
...||.|+|.|..|.++|..++.+|. ++.++|.+++.++...-.+ +.|. .--...++....||..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~s-----~f~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHGS-----AFLSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------cccc-----ccccCCceEecCcccc
Confidence 36799999999999999999999997 8999999999876533222 1111 0011246777788999
Q ss_pred ccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTID 266 (496)
Q Consensus 224 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~ 266 (496)
.+++++||...-. +.++.+.++.++-++ .|++++...+....
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD 141 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD 141 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence 9999999987621 223444444555555 56665543333333
No 242
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.67 E-value=0.00058 Score=68.97 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=72.4
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-ccc
Q 010966 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (496)
++|+|||.|.+|..+|..+. .-|.+|..+|+........ ..+ +.. .+++ .++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence 68999999999999999987 6799999999864211100 001 111 2443 478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY 275 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~ 275 (496)
.||+|+.++|-..+.+.-+=++..+.++++++++..+ +.+.-+.+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999999888766655566777889999887432 3345567877775
No 243
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.66 E-value=0.00028 Score=70.88 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=77.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.+|+.+|..+..-|.+|+.||+.....+ .+ +. ..+++ .++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999888999999998632100 00 11 12443 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhcC-CCeeeecccc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYS-KDRIVGAHFF 286 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~~-~~r~ig~hf~ 286 (496)
||+|+.++|-..+.+.-+=++..+.++++++|+..+ +.+.-+.+.+.+.. .-. .++--|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999887766555566777889999887443 23455678777753 233 555555
No 244
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.65 E-value=0.00034 Score=68.67 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=56.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 147 VKKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
|+||+|||+|.||..++..+.+. +++ +.++|++++..+...+. .+ ....+++++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~e 57 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDE 57 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHH
Confidence 36899999999999999998876 455 66899999876653210 01 112345544
Q ss_pred -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (496)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (496)
+.++|+|++|++.+. -.++..++.+. ..+.++.|
T Consensus 58 ll~~~DvVvi~a~~~~--~~~~~~~al~~-Gk~Vvv~s 92 (265)
T PRK13304 58 LVEDVDLVVECASVNA--VEEVVPKSLEN-GKDVIIMS 92 (265)
T ss_pred HhcCCCEEEEcCChHH--HHHHHHHHHHc-CCCEEEEc
Confidence 478999999997543 23444444332 34554443
No 245
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.0019 Score=63.94 Aligned_cols=196 Identities=17% Similarity=0.196 Sum_probs=122.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc--
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (496)
+...|++||+++||..++.+.+.+|+.|..|+|+.++.+..+.+-. +| ..|....++++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHH
Confidence 4568999999999999999999999999999999999888654321 11 12333444443
Q ss_pred --ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec--cCCcccHH-HHHhhhcCCCeeeeccccC---cCCCCCeE
Q 010966 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS--NTSTIDLN-LIGERTYSKDRIVGAHFFS---PAHVMPLL 295 (496)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s--ntS~~~~~-~la~~~~~~~r~ig~hf~~---P~~~~~lv 295 (496)
++.--.||..|..... ...++++|.+++.++.||+. |++.-..+ ...+.....--|+|.---- .++.+|
T Consensus 66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-- 142 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-- 142 (487)
T ss_pred HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence 4666777777754332 35678899999988777764 44333333 2222222333466654321 111222
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCc-------eEEecC-cccchh----hchH---HHHHHHHHHHHHc--CCCHHHHH
Q 010966 296 EIVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGFAV----NRMF---FPYTQAAFLLVER--GTDLYLID 358 (496)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~-------~v~v~d-~~G~i~----nril---~~~~~ea~~l~~~--g~~~~~ID 358 (496)
.++|| .+++....+++++..+-.. ..++++ +.|.++ |-|= +.++.||..++.. |.+-++|-
T Consensus 143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia 220 (487)
T KOG2653|consen 143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA 220 (487)
T ss_pred ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 14444 5888888888888765322 234454 345433 4443 2467899998865 55888888
Q ss_pred HHHHhcC
Q 010966 359 RAITKFG 365 (496)
Q Consensus 359 ~a~~~~g 365 (496)
.++..++
T Consensus 221 ~vF~~WN 227 (487)
T KOG2653|consen 221 EVFDDWN 227 (487)
T ss_pred HHHHhhc
Confidence 8776443
No 246
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.64 E-value=0.00018 Score=72.32 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.7
Q ss_pred ccceEEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCC
Q 010966 145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVN 179 (496)
Q Consensus 145 ~~~~kV~VIGa-G~mG~~iA~~la~~G--~~V~l~d~~ 179 (496)
..|+||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 45789999999 999999999998666 489999993
No 247
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.64 E-value=5.7e-05 Score=76.17 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=63.6
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhc--ce
Q 010966 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTIS--LL 215 (496)
Q Consensus 149 kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~--~i 215 (496)
||+|||+ |.+|+.+|..++..|+ +++|+|+++ +.++.....+.+ .. .... .+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d---------------~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQD---------------CAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhh---------------hcccccCCcEE
Confidence 8999999 9999999999998764 499999987 533321111110 10 0111 12
Q ss_pred ecccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 216 TGVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
+ ..+++++++||+||.+. | .+..+.+++..++.++++++.+++..|
T Consensus 67 ~-~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 67 T-TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2 45678999999999765 1 133456667777888865666555444
No 248
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.62 E-value=6.7e-05 Score=72.51 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.9
Q ss_pred CcccCCCCCHHHHHhCCCcceecCC-chHHHHHHHHHHhhhcc
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~-~~l~~~A~~~a~~l~~~ 42 (496)
|++||++++|+||+++||||+|+|+ +++++.+.++|++++..
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999986
No 249
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.62 E-value=0.00043 Score=72.23 Aligned_cols=100 Identities=21% Similarity=0.259 Sum_probs=72.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.+|+.+|..+..-|.+|+.||+++... .+ ......+++ .++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 011223454 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~ 275 (496)
||+|+.++|-..+.+.-+=++..+.++++++|+..+ +.+.-..+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 999999999887766555466777789999886433 2345567777774
No 250
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.60 E-value=0.00015 Score=63.69 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=52.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
-++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+ .+. . -.....+++ +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---------~~~--------~-~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---------GGV--------N-IEAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---------TGC--------S-EEEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---------Ccc--------c-cceeeHHHHHHHH
Confidence 36999999999999999999999986 999999999877654321 000 0 011112233 346
Q ss_pred cCCCEEEEeccCCh
Q 010966 225 KDVDMVIEAIIENV 238 (496)
Q Consensus 225 ~~aDlVIeav~e~~ 238 (496)
.++|+||.|+|-..
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999987653
No 251
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.60 E-value=0.00017 Score=72.81 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=62.9
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcceec
Q 010966 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (496)
Q Consensus 149 kV~VIGa-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (496)
||+|||+ |.+|+.+|..++..|+ +++|+|++++. ++.....+. +.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~---------------d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM---------------DCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehh---------------cccchhcCceec
Confidence 6899999 9999999999998664 59999996542 221111110 111 11123333
Q ss_pred c-cCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 218 V-LDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 218 ~-~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
+ .+++++++||+||.+. | .+..+.+++..++.++.++++++...|.
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 3 3488999999999865 1 1222455666678887656676655443
No 252
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.56 E-value=0.00018 Score=68.19 Aligned_cols=104 Identities=27% Similarity=0.291 Sum_probs=59.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcce----ec--
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL----TG-- 217 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i----~~-- 217 (496)
.+|.|||+|.+|+.+|..|++.|. +++++|.+ .+.+.+.. .+.. .-|.-..+.....+.++ ..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-----~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ-----YFIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE-----eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 489999999999999999999998 59999998 33222110 0000 01111111111111111 11
Q ss_pred -----c-cCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe
Q 010966 218 -----V-LDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 218 -----~-~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
+ .+. +.++++|+||+|+ ++.+.+..+.....+......|.+
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence 0 111 2367899999995 677777777766665533333443
No 253
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.54 E-value=0.00032 Score=69.98 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=60.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
+||.|||+|.+|..++..+...|.+|+++|++++..+... ..|. + .....++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~-~----------~~~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGL-S----------PFHLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCC-e----------eecHHHHHHHhCC
Confidence 5899999999999999999999999999999987654321 1121 0 0001122 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
+|+||.++|... +-++..+.++++.+++...+
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence 999999998432 22344455677777765443
No 254
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.53 E-value=0.005 Score=61.09 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=88.6
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcceecccCcccccCCCEEEEeccC
Q 010966 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (496)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (496)
||+.+|..|+++|++|++++++ +..+... +.|. +...........+..+++.+.+..+|+||.|++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4443321 1221 1000000000022334445557789999999975
Q ss_pred ChHHHHHHHHHHHhhCCCCeeEeccCCcccH-HHHHhhhcCCCeeeec-ccc-----CcCCC----CCeEEEEeCCCCCH
Q 010966 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGA-HFF-----SPAHV----MPLLEIVRTNQTSP 305 (496)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~~~~-~~la~~~~~~~r~ig~-hf~-----~P~~~----~~lveiv~~~~t~~ 305 (496)
. + -.++++.+.+++.++++|++...++.. +.+...++. .++++. -++ .|-.. ...+.+-..+...
T Consensus 70 ~-~-~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~- 145 (293)
T TIGR00745 70 Y-Q-TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN- 145 (293)
T ss_pred h-h-HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch-
Confidence 4 2 356788899999888888877777754 445554432 344332 221 22211 0112222222222
Q ss_pred HHHHHHHHHHHHcCCceEEecC
Q 010966 306 QVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 306 e~~~~~~~l~~~lGk~~v~v~d 327 (496)
+..+.+.+.+...|.......|
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~d 167 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGD 167 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecch
Confidence 5566777788887766655555
No 255
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.51 E-value=0.00011 Score=75.57 Aligned_cols=99 Identities=13% Similarity=0.209 Sum_probs=67.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-ccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (496)
++|+|||.|.||+.+|..+...|++|++||+.....+ +. . ...++++ +++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~-~~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------G-DFVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------c-cccCHHHHHhh
Confidence 5899999999999999999999999999998543110 00 0 0123443 689
Q ss_pred CCEEEEeccCChH---HHHHHH-HHHHhhCCCCeeEeccCCc--ccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~---~k~~v~-~~l~~~~~~~~il~sntS~--~~~~~la~~~~ 275 (496)
||+|+.++|-..+ -...++ ++..+.++++++++..+-+ +.-..+.+.+.
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 9999999996542 122333 4456668999988744333 34456766663
No 256
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.49 E-value=0.0012 Score=69.09 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=50.4
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 148 ~kV~VIGaG~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
+||+|||+|.- ...+...++.. +-+|+++|+++++++... ....+..+..... -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~----~l~~~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL----TIAKRYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEeCCH
Confidence 48999999874 45566666643 458999999999887632 2222233321111 246677886
Q ss_pred -ccccCCCEEEEec
Q 010966 222 -ESFKDVDMVIEAI 234 (496)
Q Consensus 222 -~~~~~aDlVIeav 234 (496)
+++++||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 5799999999875
No 257
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.48 E-value=0.00088 Score=67.43 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=71.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.+|+.+|..+..-|.+|+.||+.... .. ..+ ..+++ .++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHh
Confidence 68999999999999999998889999999975321 00 000 12343 4789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~ 275 (496)
||+|+.++|-..+.+.-+=++..+.++++++++..+- .+.-+.+.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998877655555667777899998874432 345567877775
No 258
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.48 E-value=0.00079 Score=67.88 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=72.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (496)
++|+|||.|.+|+.+|..+..-|.+|+.||+..... . . . ..+++ .++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------~---------~----~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------P---------D----RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------c---------c----ccCHHHHHHh
Confidence 689999999999999999998899999999863210 0 0 0 11343 4689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~ 275 (496)
||+|+.++|-..+.+.-+=++..+.++++++|+..+- .+.-+.+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998887666555667778899998874432 345567777774
No 259
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.47 E-value=0.00037 Score=70.20 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=60.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
-++|+|||+|.||..++..+.. ...+|++|++++++.+...+++.. .|. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 3589999999999999985554 346899999999988776543221 110 12233444 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
+.+||+||.|.+.... ++.. +.+++++.|...++
T Consensus 187 v~~aDIVi~aT~s~~p----vl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 187 VRQADIISCATLSTEP----LVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HhcCCEEEEeeCCCCC----EecH--HHcCCCCEEEeeCC
Confidence 7899999988875522 2221 34677776654443
No 260
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.45 E-value=0.0015 Score=68.43 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=50.5
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 148 ~kV~VIGaG~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
+||+|||+|.. +..+...++.. +-+|+++|+++++++... ....+..+..... -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~----~l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA----EAVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEECCH
Confidence 59999999875 44555566543 358999999999887632 2222333321111 256777886
Q ss_pred -ccccCCCEEEEec
Q 010966 222 -ESFKDVDMVIEAI 234 (496)
Q Consensus 222 -~~~~~aDlVIeav 234 (496)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6799999999876
No 261
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.42 E-value=0.0017 Score=59.74 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=46.7
Q ss_pred EEEEEeCChhhHHHH--HHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-
Q 010966 149 KVAILGGGLMGSGIA--TALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (496)
Q Consensus 149 kV~VIGaG~mG~~iA--~~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (496)
||+|||+|..-.+.- ..+... +-+++++|+|+++++....-.+.. ++.-.. --++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~--------~~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGA--------DLKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTT--------SSEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCC--------CeEEEEeCCHH
Confidence 799999998866533 233332 348999999999988654333222 222111 1246678887
Q ss_pred ccccCCCEEEEec
Q 010966 222 ESFKDVDMVIEAI 234 (496)
Q Consensus 222 ~~~~~aDlVIeav 234 (496)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 5699999999876
No 262
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.41 E-value=0.00052 Score=70.91 Aligned_cols=184 Identities=14% Similarity=0.112 Sum_probs=106.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
++|+|||.|.+|..-|..+...|++|+ .+|.+.+.-+.+. +.|. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence 689999999999999999999999999 4444433333221 2221 122223
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC----------C
Q 010966 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (496)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~----------~ 291 (496)
+.++.||+|+..+|+. . ...++.++.+++++++.+.- +-+..+..-.-..+....++-+-|-.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 5689999999999977 3 77888999999999998753 22333322111111112233333333322 1
Q ss_pred CCeEEEEe-CCCCCHHHHHHHHHHHHHcCCce--EE-ec---C-cccchhh-chHHHHH---HHH--HHHHHcCCCHHHH
Q 010966 292 MPLLEIVR-TNQTSPQVIVDLLDIGKKIKKTP--IV-VG---N-CTGFAVN-RMFFPYT---QAA--FLLVERGTDLYLI 357 (496)
Q Consensus 292 ~~lveiv~-~~~t~~e~~~~~~~l~~~lGk~~--v~-v~---d-~~G~i~n-ril~~~~---~ea--~~l~~~g~~~~~I 357 (496)
.|...-|. -...+-...+.+..+...+|... +. .. + ....+.. -+|+..+ .++ -.++++|.+|+.-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 23333332 23455667888999999998652 22 11 1 1112222 2233222 222 2567889888765
Q ss_pred H
Q 010966 358 D 358 (496)
Q Consensus 358 D 358 (496)
-
T Consensus 250 ~ 250 (487)
T PRK05225 250 E 250 (487)
T ss_pred H
Confidence 4
No 263
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0017 Score=62.19 Aligned_cols=93 Identities=23% Similarity=0.289 Sum_probs=62.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccC---cc-
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---YE- 222 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~- 222 (496)
|+|.|||+|.+|.++|..|.+.|++|+++|.+++.++...... .+. .-+.. .++ ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~---------~~~----------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE---------LDT----------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh---------cce----------EEEEecCCCHHHHHh
Confidence 5899999999999999999999999999999999877633200 000 00111 112 22
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHhh-CCCCeeEecc
Q 010966 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASN 261 (496)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sn 261 (496)
.+.++|.+|-++.+|. ...++..+... +....+++-.
T Consensus 62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEe
Confidence 3689999999998764 34555555533 4555566543
No 264
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.40 E-value=0.00035 Score=69.21 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=53.4
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
++|+||| .|.||.+||..|.++|++|++|+ ++++ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6899999 99999999999999999999995 6542 11 1246
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
.||+||.|++....+... .++++++++..+
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvG 230 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVG 230 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcC
Confidence 799999999865433322 268899887643
No 265
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.39 E-value=0.0017 Score=60.91 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
++|+|+|.|.||..+|+.|...|++|+++|++++.++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998876654
No 266
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.39 E-value=0.0011 Score=69.11 Aligned_cols=75 Identities=25% Similarity=0.320 Sum_probs=48.8
Q ss_pred eEEEEEeCChhhH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (496)
Q Consensus 148 ~kV~VIGaG~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (496)
+||+|||+|..-+ .+...++.. +-+|+++|++ +++++....-++ +..+....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~----~~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK----RMVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCC
Confidence 5899999998633 455565552 3589999999 787765332222 222221110 14666777
Q ss_pred c-ccccCCCEEEEec
Q 010966 221 Y-ESFKDVDMVIEAI 234 (496)
Q Consensus 221 ~-~~~~~aDlVIeav 234 (496)
. +++++||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 6 5689999999876
No 267
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.38 E-value=0.00084 Score=69.66 Aligned_cols=85 Identities=20% Similarity=0.182 Sum_probs=60.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+. ..|. . .....+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~-~------------~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGY-E------------VMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCC-E------------EccHHHHHcCC
Confidence 5899999999999999999999999999999998776543 1231 0 01111346789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEecc
Q 010966 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASN 261 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sn 261 (496)
|+||+|.... .++. .....++++.+++..
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEe
Confidence 9999997533 2333 335567888877643
No 268
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.35 E-value=0.00046 Score=69.43 Aligned_cols=72 Identities=22% Similarity=0.192 Sum_probs=50.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
-++|+|||+|.||..++..+...| .+|+++|+++++.....+.+ |. .....+++ +.+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHH
Confidence 368999999999999999998866 68999999998765533211 11 01111122 346
Q ss_pred cCCCEEEEeccCChH
Q 010966 225 KDVDMVIEAIIENVS 239 (496)
Q Consensus 225 ~~aDlVIeav~e~~~ 239 (496)
.++|+||.|++....
T Consensus 237 ~~aDvVi~at~~~~~ 251 (311)
T cd05213 237 NEADVVISATGAPHY 251 (311)
T ss_pred hcCCEEEECCCCCch
Confidence 789999999986543
No 269
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.33 E-value=0.00023 Score=73.06 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=66.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-ccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (496)
++|+|||.|.||+.+|..+..-|++|.+||+.... . +. .. ...++++ ++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~-~~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EG-DFRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------cc-ccCCHHHHHhh
Confidence 58999999999999999999999999999964321 0 00 00 0224544 689
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHhhCCCCeeEeccCC--cccHHHHHhhhc
Q 010966 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTS--TIDLNLIGERTY 275 (496)
Q Consensus 227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS--~~~~~~la~~~~ 275 (496)
||+|+..+|-..+ ...-+=++..+.++++++++..+= .+.-+.+.+.+.
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 9999999985542 222222455567899998874332 344566766663
No 270
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.32 E-value=0.0012 Score=68.42 Aligned_cols=98 Identities=23% Similarity=0.173 Sum_probs=66.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. ...+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 5899999999999999999999999999999997643321 1221 011112346789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCC---cccHHHHHhhh
Q 010966 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS---TIDLNLIGERT 274 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS---~~~~~~la~~~ 274 (496)
|+||++.... .++. +....++++++++..+. .+....+.+..
T Consensus 252 DVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 252 DIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 9999987532 3333 35566789988875433 24556665543
No 271
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00032 Score=71.74 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=55.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
|++|.|||+|.+|+.+|..|+++| .+|++.|++.+++++...... +++...+++ +.-...+ +.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD-----~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVD-----AADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEec-----ccChHHHHHHH
Confidence 579999999999999999999999 899999999999887643211 111111000 0000111 346
Q ss_pred cCCCEEEEeccCChHH
Q 010966 225 KDVDMVIEAIIENVSL 240 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~ 240 (496)
++.|+||.|+|.....
T Consensus 67 ~~~d~VIn~~p~~~~~ 82 (389)
T COG1748 67 KDFDLVINAAPPFVDL 82 (389)
T ss_pred hcCCEEEEeCCchhhH
Confidence 8889999999876543
No 272
>PLN02306 hydroxypyruvate reductase
Probab=97.32 E-value=0.0022 Score=66.26 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=73.8
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (496)
++|+|||.|.+|+.+|..+. .-|.+|+.||+.... .+......... ....+.. ........++++ +
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~---l~~~~~~--------~~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQF---LKANGEQ--------PVTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccc---ccccccc--------cccccccCCHHHHH
Confidence 68999999999999999985 669999999987532 11100000000 0000000 001112235544 6
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC--CcccHHHHHhhhc
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTY 275 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~~~~~~la~~~~ 275 (496)
+.||+|+.++|-..+.+.-+=++..+.++++++|+..+ +.+.-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 89999999999887766655567777889999887433 2345567777764
No 273
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.29 E-value=0.00055 Score=68.89 Aligned_cols=102 Identities=21% Similarity=0.117 Sum_probs=74.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++++|||.|.+|..+|+.+..-|.+|..||+++. -+. .+ .+ .....+-.+.++.|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~-~~-----------~~------------~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEA-EK-----------EL------------GARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHH-Hh-----------hc------------CceeccHHHHHHhC
Confidence 6999999999999999999977899999999874 111 00 00 01122212457999
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhhhc
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~~~ 275 (496)
|+|+..+|-..+-..-+=++..+.++++++|+ ||+ .+.-..+.+.+.
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999888876666677778889999886 554 345566777764
No 274
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.26 E-value=0.00095 Score=69.44 Aligned_cols=87 Identities=22% Similarity=0.145 Sum_probs=60.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. ...+-.+.++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v~~l~eal~~a 268 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RVMTMEEAAELG 268 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------EecCHHHHHhCC
Confidence 5799999999999999999999999999999987654321 1121 011111346789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCC
Q 010966 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS 263 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS 263 (496)
|+||++.... .++. +....++++++++...+
T Consensus 269 DVVI~aTG~~-----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 269 DIFVTATGNK-----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCCEEEEcCC
Confidence 9999987422 2343 45566789988865443
No 275
>PRK05086 malate dehydrogenase; Provisional
Probab=97.26 E-value=0.0011 Score=66.63 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=57.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec--ccC-
Q 010966 148 KKVAILGG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (496)
|||+|||+ |.+|..++..+.. .+++++++|+++.. .+. .++ +... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~-----alD--l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGV-----AVD--LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cce-----ehh--hhcC--------CCCceEEEeCCCCH
Confidence 59999999 9999999998854 24689999998542 110 000 0000 00112332 345
Q ss_pred cccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEe
Q 010966 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (496)
Q Consensus 221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (496)
++++++||+||.|.-. +..+.+++...+.++. ++.+++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 5789999999998732 1224455666677774 555554
No 276
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.25 E-value=0.00088 Score=66.46 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=52.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
++|.|||+|-+|++++..|+..|. +|+++|++.++++...+.+...+ +. ..+....++ +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 589999999999999999999998 79999999988776544332110 00 011112222 3467
Q ss_pred CCCEEEEeccCC
Q 010966 226 DVDMVIEAIIEN 237 (496)
Q Consensus 226 ~aDlVIeav~e~ 237 (496)
++|+||.|+|-.
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 899999998754
No 277
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.24 E-value=0.00022 Score=76.50 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=40.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR 43 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~ 43 (496)
|+|||++|+|+||++|||||+|||++++++++.++|++++..+
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~ 230 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQS 230 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999999999873
No 278
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.23 E-value=0.0016 Score=67.49 Aligned_cols=131 Identities=16% Similarity=0.105 Sum_probs=79.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchh----hcccC-----------------CCC--
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT----LYKTD-----------------KIE-- 57 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~----~~~~~-----------------~~~-- 57 (496)
|+|||++++|++|+++||+|+++|++++ +++.+++.++...+ +.... .+... -+.
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 5799999999999999999999999887 55666655543321 10000 00000 010
Q ss_pred CchhHHHHHH---------HHHHHHHhhCCCCC-cHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHHH
Q 010966 58 PLGEAREIFK---------FARAQARKQAPNLT-HPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLVHI 124 (496)
Q Consensus 58 ~~~~~~~~~~---------~~~~~~~~~~~~~p-A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~l~---~s~~a~~~i~a 124 (496)
+....-..+. ++++.++.-....| +...+.+.++.+..+++++.|..|...-..++ .++|+.|++++
T Consensus 279 sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA 358 (407)
T PLN02851 279 TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRA 358 (407)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 0000000000 11111111112233 55677888888888999999999999988887 48999999998
Q ss_pred HHh-hcCCCC
Q 010966 125 FFA-QRGTSK 133 (496)
Q Consensus 125 F~~-kr~~~~ 133 (496)
-+- |.+.++
T Consensus 359 ~LIDKd~~P~ 368 (407)
T PLN02851 359 RLVDKDFAPK 368 (407)
T ss_pred HhcCCCCCCC
Confidence 765 443333
No 279
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0045 Score=61.36 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=85.9
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-
Q 010966 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (496)
-||++||+|.||++|+...++ .|++|+ +-|++.+.+.++..+.-.--...++....+.-..+-..+.+..|+|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 499999999999999987765 698755 55888887766654321000000111001111111122455566665543
Q ss_pred --cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC-cccHHHHHhhhcCCCeeeeccccCcCCCCCeEEEEeCC
Q 010966 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (496)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS-~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (496)
...|+||++.--..---+-.+..+ .....++.-|.. -..+.-+..... +-.|+ ....+.
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gv------------iyS~~~ 159 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQA---DAAGV------------IYSGGA 159 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHH---hhcCe------------EEeccC
Confidence 456889998632111112223333 334455554532 222222211111 11122 222334
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEecC
Q 010966 302 QTSPQVIVDLLDIGKKIKKTPIVVGN 327 (496)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~v~v~d 327 (496)
...|...-.+.+|.+++|..++.++.
T Consensus 160 GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 160 GDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred CCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 45677777889999999999999864
No 280
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.20 E-value=0.00075 Score=68.25 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=63.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccee
Q 010966 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G-------~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (496)
.||+|+|+ |.+|+.++..|+..+ .+|+++|+++. .++... +.-.+.. ....++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~---------------~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV---------------MELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee---------------eehhhccccccCCce
Confidence 48999999 999999999998855 48999999763 122100 0000000 1112333
Q ss_pred cccC-cccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 217 GVLD-YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 217 ~~~~-~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
...+ ++++++||+||.+.-- +..+.+++...+.++++++++++..|.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3455 4889999999987511 122335666778888766776654443
No 281
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.19 E-value=0.0014 Score=66.38 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=62.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+++. +.|. .+...++. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence 3689999999999997666543 35689999999999877554332 1110 12334444 56
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
+++||+||.|+|....+ +. .+.+++++.|.+..|.
T Consensus 190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence 89999999999865332 21 2345788877655543
No 282
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.11 E-value=0.0022 Score=55.36 Aligned_cols=103 Identities=20% Similarity=0.158 Sum_probs=58.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966 148 KKVAILGG-GLMGSGIATALIL-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (496)
+||+|+|+ |.||+.|+..+.. .|++ |..+|++++.... +.+.. -.|.- ...+..+++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~------~~~~~--------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGE------LAGIG--------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHH------HCTSS--------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhh------hhCcC--------CcccccchhHHHh
Confidence 58999999 9999999999988 6888 5666777621110 00000 00000 012334456654
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHH
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la 271 (496)
+..+|+||+.. .++.-...++.. +..+..+++-|++++-+++.
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHH
Confidence 56799999987 343333344443 33477777788888765443
No 283
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.09 E-value=0.0014 Score=64.49 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=36.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (496)
++|.|+|+|.||.+++..|+..|++|+++++++++++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 58999999999999999999999999999999887765443
No 284
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.08 E-value=0.00037 Score=75.05 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=40.5
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchHHHHHHHHHHhhhccC
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR 43 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l~~~A~~~a~~l~~~~ 43 (496)
|+|||++++|+||+++||||+|||++++++++.++|++++..+
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS 234 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999999874
No 285
>PRK04148 hypothetical protein; Provisional
Probab=97.08 E-value=0.0039 Score=54.22 Aligned_cols=94 Identities=24% Similarity=0.263 Sum_probs=64.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++|.+||+| -|..+|..|++.|++|+.+|+++++.+.+.+. + .. ...+.+ +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence 589999999 89999999999999999999999987765421 1 00 000111 12234446899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
|+|...-|. +++ +.-+-+|.+.+..+.+|..-+
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCC
Confidence 999988764 333 344556777777777775433
No 286
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.05 E-value=0.0019 Score=64.75 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=62.3
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
++|+|||+|.||...+..+.. .+. +|.+|++++++++...+++.. .+ + .+. ..+. +.+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 589999999999999999865 564 799999999988776544321 11 0 111 2333 467
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
.++|+||.|.|....+ +.. .++|++.|....|.
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence 8999999999866433 322 25778766655443
No 287
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.04 E-value=0.0011 Score=65.14 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=53.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
++|+|||. |.||.++|..|.++|+.|++|.-... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999832111 22 2357
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
+||+||.|++....++.. .++++++++..+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999865444432 378899887643
No 288
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.02 E-value=0.0024 Score=64.65 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=63.1
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
++|+|||+|.+|...+..++. .++ +|.+||+++++.++..+++...+ + -.+....++ +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 589999999999998877653 454 89999999998877654432111 1 012233444 357
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
.++|+||.|.|... .++. ..+++++.|.+..|.
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 89999999998653 2333 356788877665553
No 289
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.01 E-value=0.0026 Score=57.87 Aligned_cols=76 Identities=25% Similarity=0.263 Sum_probs=54.5
Q ss_pred eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||+|.| |..+|..|...|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 58999999997 88899999999999999998853322 23568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~ 267 (496)
+|+||-|++..--+..+ .++++.++++.+..-.+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999764323322 24556777665544433
No 290
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.00 E-value=0.0054 Score=57.78 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=79.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||+|.+|..-+..|...|.+|++++.+.. .+.. ..+.|.+. .+...-..+++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence 5899999999999999999999999999987653 1111 12223221 0111112345789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~ 304 (496)
+|+||-|. ++.++...++....+ .+ +++.+.+ .|+ -..|+.|. ...+++--+.+.+.+
T Consensus 70 ~~lVi~at-~d~~ln~~i~~~a~~---~~-ilvn~~d------------~~e---~~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAAT-DDEELNRRVAHAARA---RG-VPVNVVD------------DPE---LCSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECC-CCHHHHHHHHHHHHH---cC-CEEEECC------------Ccc---cCeEEEeeEEEcCCEEEEEECCCCC
Confidence 99999885 555666666555432 23 3332221 111 12355663 345666666777778
Q ss_pred HHHHHHHHHHHHHc
Q 010966 305 PQVIVDLLDIGKKI 318 (496)
Q Consensus 305 ~e~~~~~~~l~~~l 318 (496)
|.....+.+-++.+
T Consensus 130 P~la~~lr~~ie~~ 143 (205)
T TIGR01470 130 PVLARLLRERIETL 143 (205)
T ss_pred cHHHHHHHHHHHHh
Confidence 87777777666553
No 291
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.96 E-value=0.0019 Score=67.64 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=61.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 5899999999999999999999999999999987543321 1121 0 1123 34688
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhCCCCeeEeccCCccc
Q 010966 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTID 266 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~~~ 266 (496)
+|+||.+.. . +.++ .+..+.++++++|+. ++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLIN-vGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVGN-IGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEEE-cCCCc
Confidence 999999863 2 2344 355556789998864 44433
No 292
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.96 E-value=0.011 Score=57.88 Aligned_cols=145 Identities=20% Similarity=0.197 Sum_probs=88.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++|+|||.|.-|.+=|.+|..+|.+|++--+..... +++..+.| +...+-.++++.+
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s----------~~kA~~dG-------------f~V~~v~ea~k~A 75 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS----------WKKAKEDG-------------FKVYTVEEAAKRA 75 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh----------HHHHHhcC-------------CEeecHHHHhhcC
Confidence 699999999999999999999999988866654331 11122333 2222223668999
Q ss_pred CEEEEeccCChHHHHHHHH-HHHhhCCCCeeEeccCCcccHHHHHhhhcCCC--eeeeccccCcCC----------CCCe
Q 010966 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMPL 294 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~~~~~~la~~~~~~~--r~ig~hf~~P~~----------~~~l 294 (496)
|+|+..+|+. +-.++++ +|.+.++++..+.- +.++.+..- .+..|. .++=+-|-.|-+ ..|.
T Consensus 76 Dvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~ 150 (338)
T COG0059 76 DVVMILLPDE--QQKEVYEKEIAPNLKEGAALGF-AHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA 150 (338)
T ss_pred CEEEEeCchh--hHHHHHHHHhhhhhcCCceEEe-ccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence 9999999965 3567887 89999999886642 223332210 011111 111111222221 1233
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCc
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKT 321 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~ 321 (496)
+--+- ...+-...+.+..+.+.+|.+
T Consensus 151 LiAV~-qD~sG~a~~~Ala~AkgiGg~ 176 (338)
T COG0059 151 LIAVH-QDASGKALDIALAYAKGIGGT 176 (338)
T ss_pred EEEEE-eCCCchHHHHHHHHHHhcCCC
Confidence 33333 334555788888999998844
No 293
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.96 E-value=0.003 Score=63.99 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=53.4
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc-cc
Q 010966 148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (496)
++++|||+|.+|...+..++ ..+. +|++|++++++++...+++...+ | -.+...++++ .+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-----------~~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-----------IDVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 58999999999999999987 4675 79999999998887655432111 1 0122334443 47
Q ss_pred cCCCEEEEeccCCh
Q 010966 225 KDVDMVIEAIIENV 238 (496)
Q Consensus 225 ~~aDlVIeav~e~~ 238 (496)
.+||+||.|.|...
T Consensus 193 ~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 193 SGADIIVTTTPSET 206 (326)
T ss_pred ccCCEEEEecCCCC
Confidence 89999999997643
No 294
>PLN02494 adenosylhomocysteinase
Probab=96.94 E-value=0.005 Score=64.51 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=65.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|+|+|.|.+|.++|..+...|.+|+++|+++.....+. ..|. ... ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence 6899999999999999999999999999999987543321 1121 001 22 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhh
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER 273 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~ 273 (496)
+|+||++.... ..+..+..+.++++++|+.... .+....+.+.
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 99999875432 2233555567899998875544 2445555543
No 295
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.92 E-value=0.0052 Score=59.56 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=45.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc
Q 010966 147 VKKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (496)
.+||+|||+|.||..++..+...+ ++ +.++|++++..+.... .....++++
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~ 56 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLP 56 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHH
Confidence 369999999999999999987543 44 4567887765444211 122345566
Q ss_pred cc--cCCCEEEEeccC
Q 010966 223 SF--KDVDMVIEAIIE 236 (496)
Q Consensus 223 ~~--~~aDlVIeav~e 236 (496)
++ ..+|+|+||...
T Consensus 57 ~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 57 GLLAWRPDLVVEAAGQ 72 (267)
T ss_pred HHhhcCCCEEEECCCH
Confidence 53 789999999863
No 296
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.90 E-value=0.0036 Score=53.70 Aligned_cols=99 Identities=22% Similarity=0.219 Sum_probs=58.7
Q ss_pred EEEEEeC-ChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc-
Q 010966 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (496)
Q Consensus 149 kV~VIGa-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (496)
||+|||+ |.+|..++..+... ++++..+ +++.+..+.... ..+.++. .+....+.+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCccccc--------ccccccccCChh
Confidence 5899995 99999999999885 8887766 544322111110 0011100 00001111222
Q ss_pred -cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966 225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (496)
Q Consensus 225 -~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~ 267 (496)
.++|+||.|+|.+... ++...+...+.+++++++.+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 4899999999987543 3333344556789999988887753
No 297
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.90 E-value=0.0013 Score=61.46 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=36.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (496)
++|.|+|+ |.+|..++..|+..|++|++++++.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 58999996 999999999999999999999999887766443
No 298
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.88 E-value=0.0062 Score=56.95 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=58.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966 148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (496)
++|++||+|.+|..+...+-.. .+ .|.+||++.+++....+.. + ....+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------~-------------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------G-------------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------C-------------CCccccHHHH
Confidence 4899999999999999877543 24 5899999999876543210 1 112355655
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~ 266 (496)
+.+.|+|+||...+ +++.-+.+-|++ .-+.|+.|. +.+.
T Consensus 58 ~~~~DlvVEaAS~~-Av~e~~~~~L~~--g~d~iV~SV-GALa 96 (255)
T COG1712 58 IAEVDLVVEAASPE-AVREYVPKILKA--GIDVIVMSV-GALA 96 (255)
T ss_pred hhccceeeeeCCHH-HHHHHhHHHHhc--CCCEEEEec-hhcc
Confidence 48999999998532 233222233332 456777764 3344
No 299
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.88 E-value=0.02 Score=56.04 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=78.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (496)
|+||+-||+|.+|+.-...++.. .++|+++|++..++..-...- +..++..++. ..-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 57999999999999888777654 569999999998776532211 1111111111 11135667788
Q ss_pred cc-cccCCCEEEEeccC-------------ChHHHHHHHHHHHhhCCCCeeEeccCCcccHH---HHHhhhcCCCeeeec
Q 010966 221 YE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (496)
Q Consensus 221 ~~-~~~~aDlVIeav~e-------------~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~---~la~~~~~~~r~ig~ 283 (496)
.+ .++.+|+|+.+|.. |+..-.+.-+.+.+....+.|++ --|+.|+. .|...+.+.. -|+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~--~~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNS--KGI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCC--CCc
Confidence 75 58999999998832 33333444455667666777765 45666653 4444443222 255
Q ss_pred cc
Q 010966 284 HF 285 (496)
Q Consensus 284 hf 285 (496)
||
T Consensus 149 ~f 150 (481)
T KOG2666|consen 149 KF 150 (481)
T ss_pred ee
Confidence 55
No 300
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.83 E-value=0.019 Score=53.94 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=78.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||+|.||...+..|..+|.+|++++++.. .+.. ....+.+.- ..-.-..+++.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~~---------~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIRW---------KQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEEE---------EecCCChhhcCC
Confidence 6899999999999999999999999999986532 1111 112222110 000111345889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~ 304 (496)
+|+||-|.. +.++...+.... ..+. ++.+. ..|+. ..|+.|. ...+++--+.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~~a----~~~~-lvn~~------------d~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKEDL----PENA-LFNVI------------TDAES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHHH----HhCC-cEEEC------------CCCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999998864 555655554433 2333 33221 12222 2466664 345666666777778
Q ss_pred HHHHHHHHHHHHH
Q 010966 305 PQVIVDLLDIGKK 317 (496)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (496)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777766665
No 301
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.83 E-value=0.0012 Score=69.10 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (496)
++|+|||+|.||..++..|...| .+|++++++++.++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 58999999999999999999999 689999999887654
No 302
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.82 E-value=0.0021 Score=58.20 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=35.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (496)
|||+|||+ |..|+.|+.-...+||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 69999999 999999999999999999999999988754
No 303
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.81 E-value=0.0081 Score=66.95 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=75.5
Q ss_pred EEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCccc--HHHHHhhhcC-CCeeeeccccCcCC------------CCCe
Q 010966 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAH------------VMPL 294 (496)
Q Consensus 230 VIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~--~~~la~~~~~-~~r~ig~hf~~P~~------------~~~l 294 (496)
||.|+|- ....+++.++.++++++++|++.+|+.. +..+...+.. +.+|+|.||+...+ ....
T Consensus 1 vila~Pv--~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPV--AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCH--HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 6889984 4566889999999999999999888763 3455555543 35799999996543 2456
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+.+++.+.++++.++.+.++++.+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 77889999999999999999999999988885
No 304
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.79 E-value=0.0043 Score=61.38 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=51.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (496)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 6999999999887665433210 00 0111112 24467
Q ss_pred CCCEEEEeccCCh
Q 010966 226 DVDMVIEAIIENV 238 (496)
Q Consensus 226 ~aDlVIeav~e~~ 238 (496)
++|+||.|+|...
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998653
No 305
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.79 E-value=0.0049 Score=62.57 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=53.0
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 148 KKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
++|+|||+|.+|...+..+.. .+ .+|.+|++++++++...+++.+.+ | + .+....++ +.+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 589999999999999888875 45 489999999998887654432211 1 0 12334454 457
Q ss_pred cCCCEEEEeccCCh
Q 010966 225 KDVDMVIEAIIENV 238 (496)
Q Consensus 225 ~~aDlVIeav~e~~ 238 (496)
.++|+||.|.|...
T Consensus 196 ~~aDiVi~aT~s~~ 209 (330)
T PRK08291 196 AGADIIVTTTPSEE 209 (330)
T ss_pred ccCCEEEEeeCCCC
Confidence 88999999987653
No 306
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.78 E-value=0.0032 Score=67.12 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=51.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
++++|+|+|.||.+++..|+..|++|+++|+++++++...+.+ ..... ...+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~-------------~~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAF-------------PLESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------cccee-------------chhHhcccCCC
Confidence 5899999999999999999999999999999988766543211 00000 01122336789
Q ss_pred CEEEEeccCCh
Q 010966 228 DMVIEAIIENV 238 (496)
Q Consensus 228 DlVIeav~e~~ 238 (496)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998664
No 307
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.76 E-value=0.0047 Score=62.48 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=35.7
Q ss_pred CcccCCCCCHHHHHhCCCcceecCCchH------------HHHHHHHHHhhhcc
Q 010966 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (496)
Q Consensus 1 miltG~~i~A~eA~~~GLvd~vv~~~~l------------~~~A~~~a~~l~~~ 42 (496)
|++||++++|+||+++||||+|||+.++ ++.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 5789999999999999999999998887 66677777666654
No 308
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.75 E-value=0.0027 Score=66.71 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=49.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (496)
++|+|||+|.||..++..+...|. +|++++++++.++...+.+ |. ......+ .+.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~ 241 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF----------GG-----------EAIPLDELPEALA 241 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----------CC-----------cEeeHHHHHHHhc
Confidence 689999999999999999999997 8999999998765433211 10 0001112 23467
Q ss_pred CCCEEEEeccCC
Q 010966 226 DVDMVIEAIIEN 237 (496)
Q Consensus 226 ~aDlVIeav~e~ 237 (496)
++|+||.|++..
T Consensus 242 ~aDvVI~aT~s~ 253 (423)
T PRK00045 242 EADIVISSTGAP 253 (423)
T ss_pred cCCEEEECCCCC
Confidence 899999998644
No 309
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.75 E-value=0.0029 Score=61.80 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=56.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (496)
+||+|+|+ |.||..++..+... +++++ ++|++++..... .. ..+...++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 59999998 99999999888764 67755 488887643321 00 01223445543
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHH
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~l 270 (496)
++++|+||++.+.+.. .++... .+..+.-++.-|++++.+++
T Consensus 58 l~~~DvVid~t~p~~~--~~~~~~---al~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 58 LADADVLIDFTTPEAT--LENLEF---ALEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ccCCCEEEECCCHHHH--HHHHHH---HHHcCCCEEEECCCCCHHHH
Confidence 4679999998865432 223222 23334433333556665543
No 310
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.72 E-value=0.025 Score=47.91 Aligned_cols=68 Identities=29% Similarity=0.361 Sum_probs=47.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966 148 KKVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (496)
.||+|||+|.+|......+... +.+| .++|++++..+...+. .| +...+|+++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~~-------------~~~~~~~~~l 57 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------YG-------------IPVYTDLEEL 57 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TT-------------SEEESSHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------hc-------------ccchhHHHHH
Confidence 3899999999999999888776 4564 5889999887764221 11 223455543
Q ss_pred cc--CCCEEEEeccCCh
Q 010966 224 FK--DVDMVIEAIIENV 238 (496)
Q Consensus 224 ~~--~aDlVIeav~e~~ 238 (496)
++ +.|+|+.++|...
T Consensus 58 l~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 58 LADEDVDAVIIATPPSS 74 (120)
T ss_dssp HHHTTESEEEEESSGGG
T ss_pred HHhhcCCEEEEecCCcc
Confidence 33 6899999998754
No 311
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.69 E-value=0.0041 Score=58.51 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.||.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 489999999999999999999998 899999873
No 312
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.68 E-value=0.0056 Score=60.67 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=36.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (496)
++|.|||+|-+|++++..|+..|. +|++++|++++++...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 479999999999999999999997 79999999988776543
No 313
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.67 E-value=0.1 Score=52.61 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=33.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
++|+|+|+|-+|.--.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 5899999997776666666668999999999999887754
No 314
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.66 E-value=0.0037 Score=64.42 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
-.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3579999999999999999999999999999999876553
No 315
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.64 E-value=0.0062 Score=61.01 Aligned_cols=104 Identities=18% Similarity=0.096 Sum_probs=72.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
-++|+|+|+|.+|..+|+.|..-|..+.-+.+++...+...+ .+ .. ..+..+-+.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~-----------~~--~~d~~~~~~~ 217 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YY-----------AE--FVDIEELLAN 217 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hc-----------cc--ccCHHHHHhh
Confidence 478999999999999999999999444444555443332211 01 00 1222345789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc--ccHHHHHhhh
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT 274 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--~~~~~la~~~ 274 (496)
+|+||.|.|-+.+...-+=+++...++++++|+...=+ +.-.++.+.+
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 99999999999887777777888999999988755433 3345666666
No 316
>PLN00203 glutamyl-tRNA reductase
Probab=96.64 E-value=0.0031 Score=67.56 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=55.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-cccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (496)
-++|+|||+|.||..++..|...|+ +|++++++++.++...+.. . + .. -......+ .+.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~--------~-g-~~--------i~~~~~~dl~~al 327 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF--------P-D-VE--------IIYKPLDEMLACA 327 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh--------C-C-Cc--------eEeecHhhHHHHH
Confidence 4689999999999999999999997 7999999998876643211 0 1 00 00111122 2457
Q ss_pred cCCCEEEEeccCCh-HHHHHHHHHH
Q 010966 225 KDVDMVIEAIIENV-SLKQQIFADL 248 (496)
Q Consensus 225 ~~aDlVIeav~e~~-~~k~~v~~~l 248 (496)
.++|+||.|++... -+..+.++.+
T Consensus 328 ~~aDVVIsAT~s~~pvI~~e~l~~~ 352 (519)
T PLN00203 328 AEADVVFTSTSSETPLFLKEHVEAL 352 (519)
T ss_pred hcCCEEEEccCCCCCeeCHHHHHHh
Confidence 88999999875432 2344444444
No 317
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.63 E-value=0.023 Score=65.36 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=52.5
Q ss_pred cccceEEEEEeCChhhHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 010966 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE 209 (496)
Q Consensus 144 ~~~~~kV~VIGaG~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (496)
...+++|+|||+|.||+.+|..|++. +++ |++.|++++.+++..+.. .+ +
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~------ 629 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-A------ 629 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-C------
Confidence 34578999999999999999999875 344 999999998776543211 01 0
Q ss_pred hhhcceec-ccCcc----cccCCCEEEEeccCChH
Q 010966 210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS 239 (496)
Q Consensus 210 ~~~~~i~~-~~~~~----~~~~aDlVIeav~e~~~ 239 (496)
.-+.. .+|.+ .++++|+||.|+|....
T Consensus 630 ---~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 630 ---EAVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred ---ceEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 00111 22322 24679999999997653
No 318
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.62 E-value=0.0067 Score=61.65 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 489999999999999999999998 899999985
No 319
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.61 E-value=0.0027 Score=62.40 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=42.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccc
Q 010966 147 VKKVAILGGGLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (496)
|+||+|||+|.||..++..+.+. +.++..+ +++.. .+..... .. ..+..+++++++
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l 58 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDAL 58 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHh
Confidence 36999999999999999998875 5665443 33221 1111100 00 012345556554
Q ss_pred -cCCCEEEEeccCC
Q 010966 225 -KDVDMVIEAIIEN 237 (496)
Q Consensus 225 -~~aDlVIeav~e~ 237 (496)
.+.|+||||.+..
T Consensus 59 ~~~~DvVve~t~~~ 72 (265)
T PRK13303 59 PQRPDLVVECAGHA 72 (265)
T ss_pred ccCCCEEEECCCHH
Confidence 4689999999865
No 320
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.60 E-value=0.006 Score=59.76 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=54.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---
Q 010966 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD--- 220 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 220 (496)
-+||++||+|.+-.+.-...... |..|..+|+++++.+.+.+-+...+. .. .++++. .|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~------------L~---~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG------------LS---KRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H------------H----SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc------------cc---CCeEEEecchhc
Confidence 35999999999987765544443 56799999999998876543331110 11 122221 12
Q ss_pred c-ccccCCCEEEEecc--CChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 221 Y-ESFKDVDMVIEAII--ENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 221 ~-~~~~~aDlVIeav~--e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
. .+++++|+|+.|.- .+.+-|.+++..|.++++++++|+.-
T Consensus 186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1 35788999999863 23446999999999999999988754
No 321
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.60 E-value=0.0034 Score=53.84 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=58.2
Q ss_pred EEEEEe-CChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceeccc-Ccccc
Q 010966 149 KVAILG-GGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (496)
Q Consensus 149 kV~VIG-aG~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 224 (496)
||+||| +|.+|+.+...|..+ .++ +.++..+.+.-..... . .. .......+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~----~~--------~~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----V----FP--------HPKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----T----TG--------GGTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----h----cc--------ccccccceeEeecchhHh
Confidence 799999 799999999999985 335 5555655521111000 0 00 000011222222 44568
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~ 267 (496)
.++|+||.|+|.. ...++...+ +..++.++++++.+.+
T Consensus 65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRL 102 (121)
T ss_dssp TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhC
Confidence 9999999999854 344554444 4678888888887643
No 322
>PRK06046 alanine dehydrogenase; Validated
Probab=96.59 E-value=0.0078 Score=60.98 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=60.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (496)
.++|+|||+|.||...+..+.. .+. .|.+||++++..++..+++.+.+ + -.+...++.++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence 3589999999999999988874 344 79999999998887655432110 1 11233445544
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
++ +|+|+.|.|....+ |. .+.+++++.|.+..|
T Consensus 192 l~-aDiVv~aTps~~P~----~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 192 CD-CDILVTTTPSRKPV----VK--AEWIKEGTHINAIGA 224 (326)
T ss_pred hh-CCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence 44 99999999865332 21 123567776655544
No 323
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.55 E-value=0.025 Score=56.74 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~ 180 (496)
.||+|||+|.||..++..+..+ +++++ ++|+++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 5999999999999999988765 78876 479985
No 324
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.51 E-value=0.013 Score=49.58 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=59.5
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---cc--c
Q 010966 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE--S 223 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~--~ 223 (496)
|.|+|.|.+|..++..|...+.+|+++|.+++..+...+ .|. .-+.+. ++ ++ .
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence 679999999999999999977799999999998776542 221 111111 11 21 3
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
+++++.||.+.+++. ....+...+.+..+.-.+++-.
T Consensus 60 i~~a~~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 60 IEKADAVVILTDDDE-ENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp GGCESEEEEESSSHH-HHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccccCEEEEccCCHH-HHHHHHHHHHHHCCCCeEEEEE
Confidence 688999999987663 3444445555555555566543
No 325
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.49 E-value=0.013 Score=59.01 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=63.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
.+.++|||+|.++......+..- ++ +|.+|+++++..++...++.+.+ . ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-------~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-------G----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-------C----------ccceeccCHHHH
Confidence 46899999999999999887653 44 89999999999888765543221 1 123344554 56
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
+++||+|+.|.|.+..+.. .+.+++++-|...
T Consensus 193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~ai 224 (330)
T COG2423 193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINAI 224 (330)
T ss_pred hhcCCEEEEecCCCCCeec------HhhcCCCcEEEec
Confidence 8999999999986543211 1235566655443
No 326
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.39 E-value=0.014 Score=58.31 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=62.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
.++++|||+|.+|..-+..++.- .+ +|.+|++++++++...+++...+ | -.+....+. +.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 35899999999999888877653 44 89999999999887665543211 1 123344454 56
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
+.+||+|+.|.+....+ +. .+.++|++.|....|
T Consensus 180 v~~aDIV~taT~s~~P~----~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 180 LRDADTITSITNSDTPI----FN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred HhcCCEEEEecCCCCcE----ec--HHHcCCCceEEecCC
Confidence 89999999998765332 21 124566765554433
No 327
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.36 E-value=0.014 Score=53.42 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=57.8
Q ss_pred EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCc----cc
Q 010966 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY----ES 223 (496)
Q Consensus 150 V~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~~ 223 (496)
|.|+|+ |.+|..++..|.+.|++|+++-|+++.++. ... ...+... .+. +.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--------------~~~---------~~~~~~d~~d~~~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--------------SPG---------VEIIQGDLFDPDSVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--------------CTT---------EEEEESCTTCHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--------------ccc---------cccceeeehhhhhhhhh
Confidence 789997 999999999999999999999999986553 000 0111111 111 34
Q ss_pred ccCCCEEEEeccC---ChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 224 FKDVDMVIEAIIE---NVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 224 ~~~aDlVIeav~e---~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
+++||.||.+++. +...-+.+++.+++.-.+..++.|..+
T Consensus 58 l~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 58 LKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 7899999999973 233334445555443223334444433
No 328
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0099 Score=58.63 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=52.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|+|+|-++++++..|+..|. +|++++|+.+++++..+...+... .+. .....+++...+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~------~~~----------~~~~~~~~~~~~ 190 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA------AVE----------AAALADLEGLEE 190 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc------ccc----------cccccccccccc
Confidence 689999999999999999999995 799999999998776544321110 000 001122333336
Q ss_pred CCEEEEeccCCh
Q 010966 227 VDMVIEAIIENV 238 (496)
Q Consensus 227 aDlVIeav~e~~ 238 (496)
+|+||.|+|-.+
T Consensus 191 ~dliINaTp~Gm 202 (283)
T COG0169 191 ADLLINATPVGM 202 (283)
T ss_pred cCEEEECCCCCC
Confidence 899999998654
No 329
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.31 E-value=0.043 Score=57.64 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (496)
.++|+|||.|.+|.++|..|.+.|++|+++|.+++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 3589999999999999999999999999999887643
No 330
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.31 E-value=0.013 Score=63.99 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=62.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--cccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (496)
.+|.|+|+|.+|..+|..|.+.|++|+++|.|+++.+...+ .|.. ...+..+-.+.+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~~------~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGIR------AVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCCe------EEEcCCCCHHHHHhcCcc
Confidence 57999999999999999999999999999999998776532 1210 000000000112 2367
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (496)
++|.||.+++++.+.. .+...+.+..+.-.|++-
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 9999999998875432 333445555444455554
No 331
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.30 E-value=0.014 Score=64.11 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=66.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--cccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (496)
.+|.|+|.|.+|..+++.|.++|++|+++|.|++.++...+ .|.. -..+..+-.+.+ ..++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence 58999999999999999999999999999999998876532 1210 000100000112 2368
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
+||.||.+++++.. ...+...+.+..++-.|++-..+.
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCCH
Confidence 99999999987643 334555566665655677654443
No 332
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.29 E-value=0.025 Score=54.37 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=72.8
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcC-CCeeeeccccCcC--CCCCe
Q 010966 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS-KDRIVGAHFFSPA--HVMPL 294 (496)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~-~~r~ig~hf~~P~--~~~~l 294 (496)
++|.++++++|++|.=.|..- ..-.+.+++..++++++||+ ||-++|...+...+.. ..+-+|+.-|.|. +.++.
T Consensus 133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVPgt~G 210 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVPEMKG 210 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCCCCCC
Confidence 456788999999999998653 12367888888999999874 6667776655544321 1123444444442 22332
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
-..+.-.-.++|.++...++.+..|+.++.+.
T Consensus 211 q~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 211 QVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred ceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 22333445689999999999999999999875
No 333
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.049 Score=56.48 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=50.6
Q ss_pred ceEEEEEeCChhhHHHHH-HHH-h----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC
Q 010966 147 VKKVAILGGGLMGSGIAT-ALI-L----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~-~la-~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (496)
..||+|||+|..+.+--. .+. + .+.++.++|+++++++. +....++.++.-... -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecC
Confidence 358999999988765432 222 2 25699999999998873 223333444432111 34667777
Q ss_pred c-ccccCCCEEEEec
Q 010966 221 Y-ESFKDVDMVIEAI 234 (496)
Q Consensus 221 ~-~~~~~aDlVIeav 234 (496)
. +++++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 6 5799999999886
No 334
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.26 E-value=0.021 Score=57.45 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=62.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
.++++|||+|.++...+..+... . -+|.+|++++++.+...+.++ +.+ -.+...++. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-----------~~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-----------FAVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-----------CcEEEECCHHHH
Confidence 35899999999999999877653 2 389999999999887654322 111 123334454 55
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
+++||+|+.|.+....+ |. .+.+++++.|....|.
T Consensus 190 v~~ADIV~taT~s~~P~----~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 190 AHAANLIVTTTPSREPL----LQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred hcCCCEEEEecCCCCce----eC--HHHcCCCcEEEecCCC
Confidence 89999999998755432 21 1245677776655443
No 335
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.25 E-value=0.0063 Score=63.51 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=49.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccC-ccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (496)
++|.|||+|-||..++..|+..|. ++++++|+.++++...+.+. .+ .....++ .+.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~------------~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NA------------SAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CC------------eEecHHHHHHHhc
Confidence 589999999999999999999996 79999999887655432110 00 0111122 24578
Q ss_pred CCCEEEEeccC
Q 010966 226 DVDMVIEAIIE 236 (496)
Q Consensus 226 ~aDlVIeav~e 236 (496)
++|+||.|++.
T Consensus 242 ~aDiVI~aT~a 252 (414)
T PRK13940 242 KADIIIAAVNV 252 (414)
T ss_pred cCCEEEECcCC
Confidence 89999999864
No 336
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.24 E-value=0.015 Score=61.53 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=36.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
|+|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999987654
No 337
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.20 E-value=0.013 Score=51.76 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999873
No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.20 E-value=0.055 Score=48.66 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=72.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccC--cccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--YESF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--~~~~ 224 (496)
++|.|||+|.+|...+..|...|++|++++.+ ..+...+ .+ .+.. ... .+++
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-----------l~------------~i~~~~~~~~~~dl 68 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-----------LP------------YITWKQKTFSNDDI 68 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-----------cc------------CcEEEecccChhcC
Confidence 58999999999999999999999999999643 2222110 01 1111 112 2358
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC--CCCeEEEEeCCC
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQ 302 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~ 302 (496)
.++|+||-|.. +.++...+..... ...++ .+.. .|+. ..|+.|.. ..+++--+...+
T Consensus 69 ~~a~lViaaT~-d~e~N~~i~~~a~----~~~~v-n~~d------------~~~~---~~f~~pa~v~~~~l~iaisT~G 127 (157)
T PRK06719 69 KDAHLIYAATN-QHAVNMMVKQAAH----DFQWV-NVVS------------DGTE---SSFHTPGVIRNDEYVVTISTSG 127 (157)
T ss_pred CCceEEEECCC-CHHHHHHHHHHHH----HCCcE-EECC------------CCCc---CcEEeeeEEEECCeEEEEECCC
Confidence 89999998864 5555444433322 22222 2211 1221 24556643 345555556666
Q ss_pred CCHHHHHHHHHHHHH
Q 010966 303 TSPQVIVDLLDIGKK 317 (496)
Q Consensus 303 t~~e~~~~~~~l~~~ 317 (496)
.+|.....+++-++.
T Consensus 128 ~sP~la~~lr~~ie~ 142 (157)
T PRK06719 128 KDPSFTKRLKQELTS 142 (157)
T ss_pred cChHHHHHHHHHHHH
Confidence 777777666665543
No 339
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.19 E-value=0.0071 Score=62.40 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=36.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIG 188 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~ 188 (496)
++|.|||+|-||..+|.+|+.+| .+|++.+|+.+++....+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 57999999999999999999999 589999999998876543
No 340
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.10 E-value=0.017 Score=58.74 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.||.|||+|.+|+.+|..|+++|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999999 999999974
No 341
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.09 E-value=0.026 Score=45.19 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=28.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeC
Q 010966 148 KKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~ 178 (496)
++++|+|+|.||..++..+... +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999999999998 678999987
No 342
>PRK06153 hypothetical protein; Provisional
Probab=96.08 E-value=0.015 Score=59.36 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (496)
.+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 489999999999999999999998 89999986
No 343
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.08 E-value=0.021 Score=56.17 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.8
Q ss_pred eEEEEEe-CChhhHHHHHHHHh-CCCcEE-EEeCC
Q 010966 148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN 179 (496)
Q Consensus 148 ~kV~VIG-aG~mG~~iA~~la~-~G~~V~-l~d~~ 179 (496)
+||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5999999 59999999999886 477754 46743
No 344
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.08 E-value=0.02 Score=56.42 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=53.4
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||.|. +|..+|..|...|..|++.+.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6999999987 999999999999999999986532211 22578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
||+||-|++..--+.. ..++++++++...+
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCC
Confidence 9999999975422222 24678888876543
No 345
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.06 E-value=0.021 Score=56.06 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=64.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec----ccCc-c
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG----VLDY-E 222 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~----~~~~-~ 222 (496)
.||+|||.|..|.--|+...--|-+|++.|+|.+++...-.. +..|+.. ..++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence 589999999999999998888899999999999887653210 1122211 1123 4
Q ss_pred cccCCCEEEEec--cCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 223 SFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 223 ~~~~aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
.+..+|+||-+| |...+ =+-+.++..+.++|+.+|++.
T Consensus 228 ~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred HhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEEEE
Confidence 588999999887 22111 123566767778888888754
No 346
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.04 E-value=0.013 Score=58.90 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=54.1
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccc
Q 010966 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (496)
++++|||+|..+..-+..++. .++ +|.+|+++++.+++..+++.. + + -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence 589999999999998887765 455 899999999988876654321 0 1 124445555 568
Q ss_pred cCCCEEEEeccCCh--HHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 225 KDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 225 ~~aDlVIeav~e~~--~~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
++||+|+.|.+... .+ +. .+.+++++.|.+..|.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999997654 22 11 1346788877655543
No 347
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.00 E-value=0.049 Score=52.56 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=70.9
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHH---HhhhcCCCeeeeccccCcC--CCC
Q 010966 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI---GERTYSKDRIVGAHFFSPA--HVM 292 (496)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~l---a~~~~~~~r~ig~hf~~P~--~~~ 292 (496)
++|.++++++|++|.=.|..- ..-.+.+++..++++++||+ ||-++|...+ .+.+++ +-+|+.-|.|. +.+
T Consensus 131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R--~DvgVsS~HPaaVPgt 206 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGR--EDLNVTSYHPGCVPEM 206 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCc--ccCCeeccCCCCCCCC
Confidence 456788999999999998653 12367888888999999875 6666766544 444443 23444444432 122
Q ss_pred C-eEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 293 P-LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 293 ~-lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
+ -+-++ -.-.++|.++...++.+..|+.++.+.
T Consensus 207 ~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 207 KGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCceEee-cccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 2 12233 345689999999999999999999874
No 348
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.94 E-value=0.064 Score=50.99 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=76.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
++|.|||+|.++..=+..|+..|.+|+++..+ ++- .. ..+.|.++- +.-.-..+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~~---------~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLKL---------IKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEEE---------EeCCCChHHhC
Confidence 48999999999999999999999999999654 332 11 112232211 11011224588
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t 303 (496)
++++||-|+ +|.++-+.+.+.. ....+++.+.. .|+. ..|+.|+ ...+++--+.+.+.
T Consensus 85 g~~LViaAT-dD~~vN~~I~~~a----~~~~~lvn~vd------------~p~~---~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIAT-DDEKLNNKIRKHC----DRLYKLYIDCS------------DYKK---GLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECC-CCHHHHHHHHHHH----HHcCCeEEEcC------------Cccc---CeEEeeeEEecCCEEEEEECCCc
Confidence 999999996 4666665555543 33223332221 1111 2366664 34566666666677
Q ss_pred CHHHHHHHHHHHHH
Q 010966 304 SPQVIVDLLDIGKK 317 (496)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (496)
+|.....+++-++.
T Consensus 145 sP~lar~lR~~ie~ 158 (223)
T PRK05562 145 SPKTSVFIGEKVKN 158 (223)
T ss_pred CcHHHHHHHHHHHH
Confidence 88776666665554
No 349
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.93 E-value=0.0094 Score=61.84 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.3
Q ss_pred EEEEeCChhhHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 010966 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 187 (496)
|.|||+|.||+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999887754
No 350
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.92 E-value=0.016 Score=55.51 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~ 179 (496)
++|.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4899999999999999999999975 9999999
No 351
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.89 E-value=0.031 Score=61.63 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=63.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc--ccc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESF 224 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~ 224 (496)
-++|.|+|.|.+|..+++.|.+.|++++++|.|+++++...+ .|. .-..+..+-.+-+ ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~------~v~~GDat~~~~L~~agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM------KVFYGDATRMDLLESAGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC------eEEEEeCCCHHHHHhcCC
Confidence 368999999999999999999999999999999998887532 121 0000100000012 246
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEec
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (496)
+++|+||.++.++. ....+...+.++.++-.|++-
T Consensus 463 ~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 463 AKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred CcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEEE
Confidence 78999999996553 334444555555555456653
No 352
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.89 E-value=0.0085 Score=62.58 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=31.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
|.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999975
No 353
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.89 E-value=0.11 Score=52.92 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhC
Q 010966 148 KKVAILGGGLMGSGIATALILS 169 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~ 169 (496)
.+|+|+|+|.||+.++..+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999998765
No 354
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.86 E-value=0.016 Score=45.57 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (496)
||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987654
No 355
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.86 E-value=0.049 Score=55.44 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=61.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cc
Q 010966 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (496)
.++++|||+|..+..-+..+.. .. -+|++|++++++.+...+++.. .+ -.+...++. +.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence 3689999999999888766554 33 3899999999998876654421 11 123334554 45
Q ss_pred ccCCCEEEEeccCCh--H-HHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 224 FKDVDMVIEAIIENV--S-LKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 224 ~~~aDlVIeav~e~~--~-~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
+++||+|+-|.+... . ++. +.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~~Pvl~~-------~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTNATILTD-------DMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCCCceecH-------HHcCCCcEEEecCCC
Confidence 899999999987432 1 222 245778766554443
No 356
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.82 E-value=0.016 Score=57.39 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=36.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR 189 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~ 189 (496)
++|.|+|+|-.|++++..|+..|. +|+++||++++++...++
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 589999999999999999999997 799999999887765443
No 357
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.75 E-value=0.062 Score=57.43 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=37.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
-.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36999999999999999999999999999999999887654
No 358
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.032 Score=55.19 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=50.7
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||.|. .|.+++..|...|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997432221 12368
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
+|+||.|++...-+.. +.+++++++...
T Consensus 203 aDIvI~AtG~~~~v~~-------~~lk~gavViDv 230 (283)
T PRK14192 203 ADIIVGAVGKPELIKK-------DWIKQGAVVVDA 230 (283)
T ss_pred CCEEEEccCCCCcCCH-------HHcCCCCEEEEE
Confidence 9999999953221211 346788877643
No 359
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.13 Score=54.85 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=33.9
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (496)
-..++|.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 34578999999999999999999999999999987653
No 360
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.67 E-value=0.055 Score=46.05 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=52.8
Q ss_pred eEEEEEe----CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 148 ~kV~VIG----aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
++|+||| -+.+|.-+...+.++|++|+.++...+.+ ..+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58899999999999999999998665322 12334455554
Q ss_pred c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
. ...|+++.++|.+ .--++++++.+.-....++.+.
T Consensus 52 ~p~~iDlavv~~~~~--~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPD--KVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp CSST-SEEEE-S-HH--HHHHHHHHHHHHT-SEEEE-TT
T ss_pred CCCCCCEEEEEcCHH--HHHHHHHHHHHcCCCEEEEEcc
Confidence 4 6899999999744 3456777776653344444433
No 361
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.62 E-value=0.13 Score=54.34 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=37.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
.++|.|+|+|.+|..++..|...|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 57899999999999999999999999999999999876643
No 362
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.61 E-value=0.037 Score=57.31 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=33.4
Q ss_pred eEEEEEeCChhhHHH-HHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 148 ~kV~VIGaG~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
|||.++|+|.||++. ...|.++|++|+++|++++..+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 589999999999855 788888999999999988866554
No 363
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.59 E-value=0.035 Score=53.67 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (496)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 8999998753
No 364
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.58 E-value=0.059 Score=54.94 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=56.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh-cceecccCccc
Q 010966 147 VKKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI-SLLTGVLDYES 223 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~-~~i~~~~~~~~ 223 (496)
|.||+|+|+|.||..++..+..+ +++|+. .|.+++......++. .++. .+... ......- ..+....+++.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~e 74 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIED 74 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhH
Confidence 35999999999999999988764 567554 465654433322110 0000 00000 0000000 12333344443
Q ss_pred -ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCc
Q 010966 224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (496)
Q Consensus 224 -~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (496)
+.++|+||+|.+.... .+.. ..++..++.++++++.
T Consensus 75 l~~~vDVVIdaT~~~~~--~e~a---~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 75 LLEKADIVVDATPGGVG--AKNK---ELYEKAGVKAIFQGGE 111 (341)
T ss_pred hhccCCEEEECCCchhh--HHHH---HHHHHCCCEEEEcCCC
Confidence 5789999999986543 2222 2333445666666653
No 365
>PRK08223 hypothetical protein; Validated
Probab=95.54 E-value=0.037 Score=54.55 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|||+|-+|+.++..|+++|. +++++|.+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 489999999999999999999998 899999874
No 366
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.50 E-value=0.038 Score=56.89 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 489999999999999999999997 899999873
No 367
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.49 E-value=0.045 Score=54.41 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (496)
++|.|||+|-.+++|+..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 589999999999999999999897 8999999965
No 368
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.49 E-value=0.063 Score=51.59 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=29.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 799999864
No 369
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.49 E-value=0.091 Score=56.06 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=36.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
-.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36999999999999999999999999999999999876543
No 370
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.23 Score=52.56 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
++|.|+|+|.+|.++|..|+..|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999986
No 371
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.43 E-value=0.039 Score=52.90 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 489999999999999999999998 899998764
No 372
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.42 E-value=0.046 Score=56.46 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=53.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-C-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-c
Q 010966 147 VKKVAILGGGLMGSGIATALIL-S-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~-~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (496)
.++++|||+|.++......++. . .+ +|.+|++++++++...+++...+ .|. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~-----~~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY-----PQI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-----CCC----------ceEEEeCCHHH
Confidence 4689999999999999988876 3 34 89999999999887665443211 010 013344555 4
Q ss_pred cccCCCEEEEeccC
Q 010966 223 SFKDVDMVIEAIIE 236 (496)
Q Consensus 223 ~~~~aDlVIeav~e 236 (496)
.+++||+|+-|.+.
T Consensus 220 av~~ADIVvtaT~s 233 (379)
T PRK06199 220 VVRGSDIVTYCNSG 233 (379)
T ss_pred HHcCCCEEEEccCC
Confidence 58999999998853
No 373
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.19 Score=53.89 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (496)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
No 374
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.35 E-value=0.043 Score=56.03 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=57.4
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcc--
Q 010966 147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-- 222 (496)
Q Consensus 147 ~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-- 222 (496)
|+||+|||+ |.+|..++..+... +++++.+-.+.+..+...+ .+ +.+.. . .... ..+++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~------~~~~~-----~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VH------PHLRG-----L-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hC------ccccc-----c-cCce-eecCCHH
Confidence 579999997 99999999999876 6776554333222111110 00 00000 0 0001 11121
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~ 268 (496)
...++|+|+.|+|.... .++..++ ...++.|+++++...++
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 35689999999997643 2333333 34678899999877663
No 375
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.32 E-value=0.058 Score=53.14 Aligned_cols=39 Identities=31% Similarity=0.238 Sum_probs=34.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (496)
++|.|+|+|-.+++++..|+..|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999877654
No 376
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.32 E-value=0.02 Score=58.67 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999998 899999875
No 377
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.27 E-value=0.03 Score=55.69 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~ 181 (496)
+++.|+|+|-+|.+|+..|+..|.+ |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
No 378
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.24 E-value=0.52 Score=44.49 Aligned_cols=130 Identities=25% Similarity=0.267 Sum_probs=83.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||.|..|..=+..|++.|-+|+++..+. +.+.. +.+.+.+.- +.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999998776 22222 222332211 111112345677
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCC--CCCeEEEEeCCCCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS 304 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~t~ 304 (496)
+++||-|+. |.++.+.+++...++- +++ |. ...|+. ..|+.|.. ..|+.--+.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~~----i~v-Nv-----------~D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARERR----ILV-NV-----------VDDPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHhC----Cce-ec-----------cCCccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999985 5667777766655432 332 21 123332 45666653 46776667777778
Q ss_pred HHHHHHHHHHHHH
Q 010966 305 PQVIVDLLDIGKK 317 (496)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (496)
|.....+++-++.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 8777777766655
No 379
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.24 E-value=0.04 Score=56.98 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~ 179 (496)
.+|.|||+|-.|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 489999999999999999999998 79999997
No 380
>PRK07877 hypothetical protein; Provisional
Probab=95.19 E-value=0.031 Score=62.12 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=29.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~ 180 (496)
.+|+|||+| .|+.+|..|++.|. +++++|.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 489999999 89999999999995 899999864
No 381
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.12 E-value=0.065 Score=51.43 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 489999999999999999999998 899999764
No 382
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.10 E-value=0.06 Score=54.18 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (496)
|||.|+|+ |.+|+.++..|..+|++|+..+++++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 48999996 9999999999999999999999997643
No 383
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.07 E-value=0.024 Score=59.23 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
|+|+|||+|.+|.++|..|+++|++|+++|.+..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4899999999999999999999999999999753
No 384
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.03 E-value=0.048 Score=52.60 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=29.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-----------CcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-----------~~V~l~d~~~ 180 (496)
.||.|||+|-.|+.++..|++.| .+++++|.+.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 58999999999999999999864 3899999764
No 385
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.03 E-value=0.058 Score=52.30 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 899998764
No 386
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.00 E-value=0.081 Score=43.90 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=50.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-ccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (496)
++|.|||+|.+|..=+..|...|.+|+++..+.+..+ +.++ .. ...+ +++.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~ 60 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG 60 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence 5899999999999999999999999999998861111 1111 00 1112 46889
Q ss_pred CCEEEEeccCChHHHHHHHHHHH
Q 010966 227 VDMVIEAIIENVSLKQQIFADLE 249 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~ 249 (496)
+|+||.|. ++.++.+.+.+...
T Consensus 61 ~~lV~~at-~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 61 ADLVFAAT-DDPELNEAIYADAR 82 (103)
T ss_dssp ESEEEE-S-S-HHHHHHHHHHHH
T ss_pred heEEEecC-CCHHHHHHHHHHHh
Confidence 99999775 45666666666544
No 387
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.97 E-value=0.11 Score=55.40 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.-++|.|||+|..|.++|..|+..|++|+++|.++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 346899999999999999999999999999997653
No 388
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.97 E-value=0.094 Score=55.16 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=26.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--------CC--c-EEEEeCCHHH
Q 010966 148 KKVAILGGGLMGSGIATALILS--------NY--P-VILKEVNEKF 182 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~--------G~--~-V~l~d~~~~~ 182 (496)
.+|+|||+|.||++++..+..+ |. + +.++|++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~ 49 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK 49 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence 5899999999999999877543 33 3 4566888654
No 389
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.087 Score=51.61 Aligned_cols=110 Identities=20% Similarity=0.287 Sum_probs=65.8
Q ss_pred HHHHhhcCCCCCCCCCCCCCCcccceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 010966 123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG 201 (496)
Q Consensus 123 ~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (496)
.+||....+.|..+ +-|.|||+|-+|+-.+..|+++|+ ++.++|.++-.+...... ....+..-|
T Consensus 61 ~aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrH---s~Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRH---SCATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhh---hhhhHhhcC
Confidence 36777666655433 359999999999999999999998 688889877555432211 111111222
Q ss_pred CCCHHHHHhhhcceec-----------c-cCccc--ccCCCEEEEeccCChHHHHHHHHH
Q 010966 202 KMTQEKFEKTISLLTG-----------V-LDYES--FKDVDMVIEAIIENVSLKQQIFAD 247 (496)
Q Consensus 202 ~~~~~~~~~~~~~i~~-----------~-~~~~~--~~~aDlVIeav~e~~~~k~~v~~~ 247 (496)
.....-....+..|.+ + ++.++ ..+-|+|++|+ ++.+.|-.+++-
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y 185 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY 185 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence 2221112222222111 1 22233 46799999998 577778777664
No 390
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.067 Score=52.74 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=52.4
Q ss_pred eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc-cccc
Q 010966 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (496)
++|+|||.|.. |..+|..|.+.|..|++..... .++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence 68999999877 9999999999999999865321 122 2367
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
+||+||.+++..- ++.. ..++++++++...
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcc
Confidence 8999999998432 2322 5678999887643
No 391
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.81 E-value=0.045 Score=53.58 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 489999999999999999999995 899999874
No 392
>PRK05868 hypothetical protein; Validated
Probab=94.67 E-value=0.029 Score=57.89 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
|++|.|||+|.-|...|..|+++|++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 56899999999999999999999999999998865
No 393
>PLN00016 RNA-binding protein; Provisional
Probab=94.65 E-value=0.077 Score=54.84 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.3
Q ss_pred cceEEEEE----eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966 146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (496)
Q Consensus 146 ~~~kV~VI----Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (496)
.++||.|+ |+ |.+|+.++..|...||+|++++++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45789999 76 999999999999999999999998764
No 394
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.64 E-value=0.16 Score=50.43 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=54.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcceecccCcccc
Q 010966 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~ 224 (496)
.||+|||+|.+|......+.+. +.++ .++|++++....... .+.|.-. ....+..+. ..++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 5899999999999977777654 5664 578998864321111 1123111 001111110 0123
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (496)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~ 265 (496)
.+.|+|+++.+.... .+... .....++.+.++++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~---~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAA---KLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHH---HHHHcCCeEEECCccc
Confidence 679999999986533 22222 2335677777776643
No 395
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.58 E-value=0.015 Score=57.40 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=29.0
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
||.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999998 799988653
No 396
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.57 E-value=0.042 Score=55.41 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~ 179 (496)
.|+|||+|..|.++|..|++.|++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999998
No 397
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.54 E-value=0.23 Score=50.31 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=49.2
Q ss_pred cceEEEEEeCChhh-HHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCc
Q 010966 146 RVKKVAILGGGLMG-SGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (496)
Q Consensus 146 ~~~kV~VIGaG~mG-~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (496)
.+.||+|||+|.++ ...+..+...+ .-|.++|+++++++...+. -|. -...+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~------------~~~~~~~ 59 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI------------AKAYTDL 59 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC------------CcccCCH
Confidence 35799999998554 55777777765 3577889999987765432 110 0234556
Q ss_pred cc-c--cCCCEEEEeccCChHH
Q 010966 222 ES-F--KDVDMVIEAIIENVSL 240 (496)
Q Consensus 222 ~~-~--~~aDlVIeav~e~~~~ 240 (496)
++ + .+.|+|+.|+|.+...
T Consensus 60 ~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 60 EELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHHhcCCCCCEEEEcCCChhhH
Confidence 54 3 3479999999987653
No 398
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.54 E-value=0.11 Score=49.69 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=29.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEE-EEeC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVI-LKEV 178 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~-l~d~ 178 (496)
++|+|.|.|.+|..+|..|...|.+|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999988 7787
No 399
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.52 E-value=0.094 Score=53.67 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=35.0
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 010966 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (496)
+|.|+|+|.+|.-.++.+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999998888888885 78888999999987653
No 400
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.46 E-value=0.21 Score=47.57 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (496)
.+|.|+|.|-+|+-.+..|++.|+ +++++|.+.=
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 489999999999999999999998 8999998764
No 401
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.41 E-value=0.038 Score=55.70 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=29.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.+|+|||+|.-|..+|..|+++|++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999999764
No 402
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.41 E-value=0.082 Score=47.62 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=48.1
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||-+ ..|..++..|.+.|..|++.+.....++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 689999996 5899999999999999999886543222 22578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~ 265 (496)
||+||.++...--++. ..+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--CEE
T ss_pred ccEEeeeecccccccc-------ccccCCcEEEecCCcc
Confidence 9999999965433332 3568999888655443
No 403
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.41 E-value=0.12 Score=50.90 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=51.4
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||.| ..|..+|..|...|..|++.+.....+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999999 9999999999999999999864332221 12568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
||+||-|+...--++. ..++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDv 228 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDI 228 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEe
Confidence 9999999964322222 345888888754
No 404
>PLN03075 nicotianamine synthase; Provisional
Probab=94.39 E-value=0.16 Score=50.28 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=67.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cC---
Q 010966 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD--- 220 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 220 (496)
-++|+.||+|..|-+-...++.. +-.++.+|++++.++.+++.+.. +.| + -+++++. .|
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchhh
Confidence 46899999999987655544443 44799999999999887654321 011 1 1223332 12
Q ss_pred -cccccCCCEEEEeccC--ChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 221 -YESFKDVDMVIEAIIE--NVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 221 -~~~~~~aDlVIeav~e--~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
.....+.|+|+..+-- +.+-|.+++..+.+.++|+.++..-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 1135688999988522 12458899999999999999887554
No 405
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.35 E-value=0.057 Score=41.18 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.2
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 152 ILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 152 VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
|||+|.-|...|..|++.|++|+++|.++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998753
No 406
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.065 Score=50.85 Aligned_cols=39 Identities=33% Similarity=0.290 Sum_probs=34.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
++|.|+|+ |.+|..++..|++.|++|++.+++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 57889987 9999999999999999999999998765543
No 407
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.31 E-value=0.31 Score=51.21 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=61.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec
Q 010966 148 KKVAILGG-GLMGSGIATALILS---NY----PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~---G~----~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (496)
-+|+|-|+ |.+|-++...+++. |. .++|+|+ +.+.++...-.+.+..- ..+..+..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence 48999988 99999999998874 42 5889999 56665544333322110 11122222
Q ss_pred -ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhCCC-CeeEec
Q 010966 218 -VLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPP-HCILAS 260 (496)
Q Consensus 218 -~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~-~~il~s 260 (496)
+.+++++++||+||.+.- .+..+.+.+...|.++.++ ..|++.
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv 248 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVA 248 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 456889999999998751 1223445555667777662 344443
No 408
>PRK07411 hypothetical protein; Validated
Probab=94.30 E-value=0.097 Score=54.38 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|||+|-.|+.++..|+..|+ +++++|.+.
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 489999999999999999999998 799999864
No 409
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.30 E-value=0.046 Score=56.68 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=32.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.+|.|||+|..|...|..|++.|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5899999999999999999999999999999865
No 410
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.28 E-value=0.13 Score=50.24 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=41.6
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 010966 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 192 (496)
Q Consensus 146 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 192 (496)
..+++.|-|+ +-+|..+|..|+++|++|+++.|+.+++++..+++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4567888898 9999999999999999999999999999987776654
No 411
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.27 E-value=0.052 Score=47.36 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
+||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 589999999999999999999998 799999764
No 412
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.24 E-value=0.045 Score=56.22 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
..|.|||+|.+|.++|..|++.|++|+++|+..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 369999999999999999999999999999874
No 413
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.23 E-value=0.52 Score=49.82 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
++|.|+|+|.+|.++|..|++.|++|++.|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5799999999999999999999999999998754
No 414
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.20 E-value=0.15 Score=44.83 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=53.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|+|- ...|..++..|.+.|..|++.+.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999998 66699999999999999999986432221 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
||+||-++....-++.+ .+++++++.+...
T Consensus 72 ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPTE-------WIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCHH-------HcCCCCEEEEcCC
Confidence 99999999765434433 4788998875443
No 415
>PRK06753 hypothetical protein; Provisional
Probab=94.19 E-value=0.046 Score=56.14 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=32.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
++|.|||+|.-|...|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4899999999999999999999999999998875
No 416
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.18 E-value=0.11 Score=53.61 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=60.3
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 146 ~~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
+.+||+|+|+ |..|..+...|..+ +++|+.+..+.+.-+... ..... +..+.. ..+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~----~~~~~-l~~~~~---------~~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG----SVFPH-LITQDL---------PNLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch----hhCcc-ccCccc---------ccee-cCCHHH
Confidence 4579999999 99999999999988 779999877543311100 00000 000000 0000 111223
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~ 267 (496)
++++|+||.|+|.. .-.++...+ ..++.|+++++..-+
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~~----~~g~~VIDlSs~fRl 139 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKAL----PKDLKIVDLSADFRL 139 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHHH----hCCCEEEEcCchhcc
Confidence 68899999999864 233343433 456888888876544
No 417
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.17 E-value=3.1 Score=41.50 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=28.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~ 187 (496)
++|+|+|+|-.| .+|..++++ |++|+++|.+...-+++.
T Consensus 183 ~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea~ 222 (360)
T KOG0023|consen 183 KWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEAI 222 (360)
T ss_pred cEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHHH
Confidence 589999997765 455555554 999999999975555443
No 418
>PRK07236 hypothetical protein; Provisional
Probab=94.17 E-value=0.05 Score=56.31 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=33.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 146 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+.++|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 347999999999999999999999999999999864
No 419
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.14 E-value=0.054 Score=55.79 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=32.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.++|+|||+|.+|.+.|..|++.|.+|+++|..+-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 46899999999999999999999999999998763
No 420
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.06 E-value=0.16 Score=48.31 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
++|+|.|.|++|+.+|..|...|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 599999999999999999999988 677788877
No 421
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=94.06 E-value=0.34 Score=43.16 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=27.9
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcEEE-Ee-CCHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALIL-SNYPVIL-KE-VNEKFLEA 185 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~-~G~~V~l-~d-~~~~~~~~ 185 (496)
.||+|+|+|.||..++..+.. .+++++. .| .+++.+..
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ 41 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAH 41 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHH
Confidence 389999999999999998875 4666554 56 35555544
No 422
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.05 E-value=0.052 Score=55.82 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
.|.|||+|.+|.++|..|++.|++|+++|...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999853
No 423
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.02 E-value=0.21 Score=52.26 Aligned_cols=32 Identities=19% Similarity=0.476 Sum_probs=29.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCH
Q 010966 149 KVAILGGGLMGSGIATALILSNY------PVILKEVNE 180 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~------~V~l~d~~~ 180 (496)
||.|||+|..|..++..|+..|+ +++++|.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 58999999999999999999998 899999864
No 424
>PRK06847 hypothetical protein; Provisional
Probab=94.00 E-value=0.055 Score=55.57 Aligned_cols=35 Identities=43% Similarity=0.545 Sum_probs=32.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+++|+|||+|.-|...|..|++.|++|+++|++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998764
No 425
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.97 E-value=0.13 Score=52.67 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=58.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCccc
Q 010966 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES 223 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 223 (496)
+||+|||+ |.+|..++..|..+ +++++ +++.+...-+... ..+ +.+.. . ...... .+.++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhC------ccccc-----c-CCceeecCCHHH
Confidence 48999999 99999999999976 67877 5565543211110 000 10000 0 001111 12233
Q ss_pred c-cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHH
Q 010966 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (496)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~ 268 (496)
+ .++|+||.|+|.... .++..++ ...++.|+++++...++
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~---~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPEL---LAAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHH---HhCCCEEEeCChhhhcC
Confidence 3 589999999997632 3333333 24578888888876543
No 426
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.97 E-value=0.35 Score=50.82 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=33.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (496)
.+||.|+|+|.-|.++|..|.+.|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 579999999999999999999999999999987765
No 427
>PRK14852 hypothetical protein; Provisional
Probab=93.96 E-value=0.066 Score=60.85 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.||+|||+|-.|+.++..|+..|+ +++++|-+.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 789988764
No 428
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.96 E-value=1.4 Score=43.80 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=36.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (496)
..|+|.|+|.+|.+.+.....+|- +++.+|+|+++.+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 579999999999999999998886 8999999999988765
No 429
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.93 E-value=0.057 Score=56.05 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~ 180 (496)
..|.|||+|.+|.++|..|++. |++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4799999999999999999998 99999999874
No 430
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.89 E-value=0.48 Score=47.51 Aligned_cols=147 Identities=23% Similarity=0.302 Sum_probs=78.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (496)
.+|+|+|+ |..|.-+...|....++ +.++-.....=+...+ . .+. ...-.....+..+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f--~~~--------~~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------F--GGK--------SIGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------c--cCc--------cccCccccccccc
Confidence 58999988 99999999999987553 3343333221111000 0 000 0000011134456
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCeE---EEEeC
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL---EIVRT 300 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~lv---eiv~~ 300 (496)
.+++|+|+.|.+.+.. +++..++. ..++++++|+|...++. +--+-+-..||-+....- -|+.+
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~--------DVPLVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDP--------DVPLVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCC--------CCCEecCCcCHHHHHhhhhCCCEEEC
Confidence 7899999999986643 44444443 46799999999775432 111111122322211000 35555
Q ss_pred CCCC-HHHHHHHHHHHHHcCCceEEe
Q 010966 301 NQTS-PQVIVDLLDIGKKIKKTPIVV 325 (496)
Q Consensus 301 ~~t~-~e~~~~~~~l~~~lGk~~v~v 325 (496)
+.++ ...+-.+..+.+..|-.-+.+
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEE
Confidence 5543 344555666777666544444
No 431
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.22 Score=48.14 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
++|.|+|+ |.+|..++..|+.+|++|++.+++++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999987 9999999999999999999999998766543
No 432
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.85 E-value=0.042 Score=59.59 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.||.|||+|..|+.+|..|+..|+ +++++|.+.
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 799999753
No 433
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.85 E-value=0.054 Score=60.39 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999874
No 434
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.80 E-value=0.066 Score=55.69 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.||.|||+|-.|+.+|..|+..|+ +++++|.+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 489999999999999999999998 799999764
No 435
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.76 E-value=0.39 Score=48.87 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.2
Q ss_pred eEEEEEeCChhhHHHHHHHHh
Q 010966 148 KKVAILGGGLMGSGIATALIL 168 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~ 168 (496)
.+|+|+|.|++|++++..+..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999998876
No 436
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.73 E-value=0.4 Score=50.92 Aligned_cols=130 Identities=19% Similarity=0.298 Sum_probs=80.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccccc
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (496)
++|.|||+|.++..=+..|...|.+|+++... ++- .. ..+.|.++- +.-.-..++++
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~~-----------l~~~~~i~~---------~~~~~~~~dl~ 71 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-TA-----------WADAGMLTL---------VEGPFDESLLD 71 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-HH-----------HHhCCCEEE---------EeCCCChHHhC
Confidence 68999999999999999999999999998543 321 11 122332210 00011234688
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcC--CCCCeEEEEeCCCC
Q 010966 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (496)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t 303 (496)
++++||-|+ +|.++.+.+.+. +....+++.+.. .|+ ..+|+.|. ...+++--+...+.
T Consensus 72 ~~~lv~~at-~d~~~n~~i~~~----a~~~~~lvN~~d------------~~~---~~~f~~pa~~~~g~l~iaisT~G~ 131 (457)
T PRK10637 72 TCWLAIAAT-DDDAVNQRVSEA----AEARRIFCNVVD------------APK---AASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_pred CCEEEEECC-CCHHHhHHHHHH----HHHcCcEEEECC------------Ccc---cCeEEEeeEEecCCEEEEEECCCC
Confidence 999998886 455555555444 333344443221 121 12466664 45677777777788
Q ss_pred CHHHHHHHHHHHHHc
Q 010966 304 SPQVIVDLLDIGKKI 318 (496)
Q Consensus 304 ~~e~~~~~~~l~~~l 318 (496)
+|.....+++-++.+
T Consensus 132 sP~~a~~lr~~ie~~ 146 (457)
T PRK10637 132 SPVLARLLREKLESL 146 (457)
T ss_pred CcHHHHHHHHHHHHh
Confidence 888888777766654
No 437
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.70 E-value=0.063 Score=55.51 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4799999999999999999999999999999753
No 438
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=93.67 E-value=0.55 Score=45.44 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=72.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-----------cEEEEeCCH----HH--HHHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-----------PVILKEVNE----KF--LEAGIGRVRANLQSRVKKGKMTQEKFEK 210 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-----------~V~l~d~~~----~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~ 210 (496)
.||.|.|+|.-|.+||..+...+. +++++|..- ++ +.... +.+....+
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~----~~~~~~~~----------- 90 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNE----YHLARFAN----------- 90 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHH----HHHHHHcC-----------
Confidence 589999999999999998887654 688888752 10 11100 00000000
Q ss_pred hhcceecccCc-cccc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe-ccCC---cccHHHHHhhhcCCCeeeec
Q 010966 211 TISLLTGVLDY-ESFK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTS---TIDLNLIGERTYSKDRIVGA 283 (496)
Q Consensus 211 ~~~~i~~~~~~-~~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS---~~~~~~la~~~~~~~r~ig~ 283 (496)
.-....++ +.++ +.|++|=+-.-.-.+.+++++.+.+++..-.|++ ||-. -++.++..+...-..-|...
T Consensus 91 ---~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG 167 (254)
T cd00762 91 ---PERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG 167 (254)
T ss_pred ---cccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC
Confidence 00112344 4466 7888885432122467788888888877666765 6644 35667766655322234444
Q ss_pred cccCcCCC
Q 010966 284 HFFSPAHV 291 (496)
Q Consensus 284 hf~~P~~~ 291 (496)
.+|.|+..
T Consensus 168 spf~pv~~ 175 (254)
T cd00762 168 SPFHPVEL 175 (254)
T ss_pred CCCCCccc
Confidence 56666643
No 439
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.65 E-value=0.07 Score=55.63 Aligned_cols=35 Identities=37% Similarity=0.475 Sum_probs=31.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+++|.|||+|..|...|..|++.|++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46899999999999999999999999999996443
No 440
>PRK07588 hypothetical protein; Provisional
Probab=93.62 E-value=0.065 Score=55.53 Aligned_cols=34 Identities=32% Similarity=0.272 Sum_probs=31.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
++|.|||+|..|.+.|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4799999999999999999999999999998764
No 441
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.59 E-value=0.31 Score=48.25 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=52.5
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-c
Q 010966 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (496)
.||+|||+|.||...+..+.+ .+.++. ++|++++....... .+.|. -...++++. +
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~Gi------------~~~~~~~e~ll 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELGV------------KTSAEGVDGLL 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCCC------------CEEECCHHHHh
Confidence 389999999999988776664 456654 67888875321110 11221 112233433 2
Q ss_pred --cCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
.+.|+|++|.|..... +. ....+..++.+.++++
T Consensus 61 ~~~dIDaV~iaTp~~~H~--e~---a~~al~aGk~VIdekP 96 (285)
T TIGR03215 61 ANPDIDIVFDATSAKAHA--RH---ARLLAELGKIVIDLTP 96 (285)
T ss_pred cCCCCCEEEECCCcHHHH--HH---HHHHHHcCCEEEECCc
Confidence 4689999999977542 22 2223345665555543
No 442
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.55 E-value=0.069 Score=55.36 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=31.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
..+|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3579999999999999999999999999999875
No 443
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.51 E-value=0.089 Score=53.51 Aligned_cols=143 Identities=19% Similarity=0.202 Sum_probs=76.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCcc
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPV---ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYE 222 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 222 (496)
+||+|||+ |..|..+...|+.+||++ ..+..+.+.-+... + .| ..+... .+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~------~-----~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS------F-----KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee------e-----CC-----------ceeEEeeCCHH
Confidence 58999998 999999999999988864 55544432211100 0 01 012211 1123
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccHHHHHhhhcCCCeeeeccccCcCCCCCe--EEEEeC
Q 010966 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL--LEIVRT 300 (496)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~~~la~~~~~~~r~ig~hf~~P~~~~~l--veiv~~ 300 (496)
.++++|+||+|+|... -+++..++ +..+++|++++|....+. . .| .++--.|+-..... -.++..
T Consensus 60 ~~~~vDvVf~A~g~g~--s~~~~~~~---~~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAGGSV--SKKYAPKA---AAAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCChHH--HHHHHHHH---HhCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 4578999999998553 33444433 345778888887654332 0 11 23322333221110 026677
Q ss_pred CCCCHHHHHH-HHHHHHHcCCceEEe
Q 010966 301 NQTSPQVIVD-LLDIGKKIKKTPIVV 325 (496)
Q Consensus 301 ~~t~~e~~~~-~~~l~~~lGk~~v~v 325 (496)
+.+..-.+.. +..+.+..+-..+.+
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 6665554443 445555555444444
No 444
>PRK07538 hypothetical protein; Provisional
Probab=93.50 E-value=0.07 Score=55.81 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
++|.|||+|.-|...|..|+++|++|+++|++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999999874
No 445
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.49 E-value=0.22 Score=50.02 Aligned_cols=87 Identities=24% Similarity=0.206 Sum_probs=58.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccCC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (496)
+++.|.|.|-.|.++|..+...|.+|++++++|=.+-++ .++-....+-.++.+.+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 568888999999999999999999999999999543221 12223333334567788
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
|++|.+.-..--+. .+-...+++++|++ |..
T Consensus 266 DifiT~TGnkdVi~----~eh~~~MkDgaIl~-N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIR----KEHFEKMKDGAILA-NAG 296 (420)
T ss_pred CEEEEccCCcCccC----HHHHHhccCCeEEe-ccc
Confidence 99999875432222 22223467888775 544
No 446
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.47 E-value=0.22 Score=48.88 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=53.4
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||-+ ..|..+|..+...|..|+....+...+.. .+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~-------------------------------------~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKA-------------------------------------ELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHH-------------------------------------HHhh
Confidence 589999998 88999999999999999999876543222 2568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (496)
||+||-|++-..-++.+ .+++++++++..
T Consensus 196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVg 224 (279)
T PRK14178 196 ADILVSAAGKAGFITPD-------MVKPGATVIDVG 224 (279)
T ss_pred CCEEEECCCcccccCHH-------HcCCCcEEEEee
Confidence 99999999633222222 358999887654
No 447
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.44 E-value=0.079 Score=54.27 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=30.0
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
.|.|||+|.+|.++|..|++.|++|+++|...
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999999999999999999999864
No 448
>PRK14851 hypothetical protein; Provisional
Probab=93.39 E-value=0.14 Score=56.86 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.||+|||+|-.|+.++..|++.|+ +++++|.+.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 489999999999999999999998 799988764
No 449
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=93.35 E-value=0.93 Score=41.86 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=32.5
Q ss_pred ceEEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 147 VKKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 147 ~~kV~VI-Ga-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
+.|++++ |+ --+|.+|++.|+++|++|.+.|++.+.++...
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 3466655 54 45899999999999999999999988766544
No 450
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=93.29 E-value=0.08 Score=55.38 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=30.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+|+|||+|..|...|..|++.|++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999997665
No 451
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.28 E-value=0.084 Score=54.61 Aligned_cols=33 Identities=39% Similarity=0.519 Sum_probs=30.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC---CCcEEEEeCC
Q 010966 147 VKKVAILGGGLMGSGIATALILS---NYPVILKEVN 179 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~---G~~V~l~d~~ 179 (496)
..+|.|||+|..|..+|..|+++ |++|+++|+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 35799999999999999999998 9999999994
No 452
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.26 E-value=0.15 Score=51.64 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILS-N-YPVILKEVNEKFLEAG 186 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~ 186 (496)
++|.|+|+ |.||+.++..|+.+ | .+|++++++++.+...
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 58999999 89999999999854 5 5899999998876553
No 453
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.21 E-value=0.076 Score=55.28 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=32.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+||.|||+|.-|...|..|+++|++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998764
No 454
>PRK07045 putative monooxygenase; Reviewed
Probab=93.20 E-value=0.1 Score=54.05 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=32.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (496)
..+|.|||+|..|...|..|+++|++|+++|+.++.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 358999999999999999999999999999988753
No 455
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.19 E-value=0.093 Score=54.52 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=32.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.+|.|||+|..|...|..|+++|++|+++|+.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999999874
No 456
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.19 E-value=0.23 Score=48.98 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=51.5
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||-|. .|.++|..|...|..|++.+.....+. +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999875422111 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEecc
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (496)
||+||.++.-.--++. ..++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDv 230 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDV 230 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEc
Confidence 9999999942221222 467889988754
No 457
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.15 E-value=0.091 Score=54.50 Aligned_cols=34 Identities=35% Similarity=0.402 Sum_probs=31.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
.++|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 3579999999999999999999999999999983
No 458
>PRK08013 oxidoreductase; Provisional
Probab=93.14 E-value=0.078 Score=55.21 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=31.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
..|.|||+|..|...|..|++.|++|+++|+.++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999998865
No 459
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=93.05 E-value=0.47 Score=46.58 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=74.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhC----CC-------cEEEEeCCH----HH--HHHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 010966 148 KKVAILGGGLMGSGIATALILS----NY-------PVILKEVNE----KF--LEAGIGRVRANLQSRVKKGKMTQEKFEK 210 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~----G~-------~V~l~d~~~----~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~ 210 (496)
.||.|+|+|.-|.+||..+... |. +++++|++- ++ +.... ..|. +..
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~----~~~a---~~~--------- 89 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFK----KPFA---RKD--------- 89 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHH----HHHH---hhc---------
Confidence 5899999999999999988876 87 899999862 10 11111 1111 110
Q ss_pred hhcceecccCc-cccc--CCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe-ccCCc---ccHHHHHhhhcCCCeeeec
Q 010966 211 TISLLTGVLDY-ESFK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTST---IDLNLIGERTYSKDRIVGA 283 (496)
Q Consensus 211 ~~~~i~~~~~~-~~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS~---~~~~~la~~~~~~~r~ig~ 283 (496)
+. ....++ +.++ ++|++|=+-...-.+++++++...+++..-.|++ ||-+. +..++..+...-..-|...
T Consensus 90 --~~-~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG 166 (279)
T cd05312 90 --EE-KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG 166 (279)
T ss_pred --Cc-ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC
Confidence 00 012344 4466 7888886432222467788888888877766775 67543 5666766654322223334
Q ss_pred cccCcCC
Q 010966 284 HFFSPAH 290 (496)
Q Consensus 284 hf~~P~~ 290 (496)
.||.|+.
T Consensus 167 sPf~pv~ 173 (279)
T cd05312 167 SPFPPVE 173 (279)
T ss_pred CCCCCee
Confidence 6777764
No 460
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.03 E-value=0.097 Score=53.98 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=30.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~ 179 (496)
|.+|.|||+|..|.+.|..|++.|++|+++|..
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 357999999999999999999999999999975
No 461
>PRK07102 short chain dehydrogenase; Provisional
Probab=93.02 E-value=0.24 Score=47.37 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=35.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
|++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 357889986 99999999999999999999999988765543
No 462
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.99 E-value=0.23 Score=48.17 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=35.9
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (496)
|+|.|.|+ |.+|.++|..|+..|++|++.+++++.++...+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE 43 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 47888887 8899999999999999999999998877665443
No 463
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.91 E-value=0.79 Score=45.38 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 180 (496)
.+|.|+|+|-+|..+|..|+.+|. +|+++|.+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 489999999999999999999998 799999765
No 464
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.87 E-value=1.1 Score=47.51 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=31.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+||+|+|.|..|.++|..|...|++|+++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 5899999999999999999999999999998753
No 465
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=92.83 E-value=0.092 Score=53.96 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=30.6
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 150 VAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 89999999999999999999999999999875
No 466
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.80 E-value=0.26 Score=48.57 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=51.7
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++|.|||-+. .|.++|..|...|..|++.+.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999884322111 22578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (496)
||+||.|+--.--++. ..++++++++...+
T Consensus 208 ADIvv~AvG~p~~i~~-------~~vk~gavVIDvGi 237 (287)
T PRK14176 208 ADILVVATGVKHLIKA-------DMVKEGAVIFDVGI 237 (287)
T ss_pred CCEEEEccCCccccCH-------HHcCCCcEEEEecc
Confidence 9999998743221222 25788998876543
No 467
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.23 Score=48.84 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=31.8
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 010966 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 189 (496)
+.|.|+|-+|..+|..|+ .|++|++.+++++.++...+.
T Consensus 5 ~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~ 43 (275)
T PRK06940 5 VVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKT 43 (275)
T ss_pred EEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHH
Confidence 456688999999999996 899999999998776654433
No 468
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.72 E-value=0.092 Score=54.79 Aligned_cols=34 Identities=38% Similarity=0.521 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.+|.|||+|.-|..+|..|+++|++|+++|+.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 5799999999999999999999999999998764
No 469
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.72 E-value=0.11 Score=53.71 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
.+|.|||+|.-|.+.|..|++.|++|+++|..+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 479999999999999999999999999999764
No 470
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=92.65 E-value=0.099 Score=53.85 Aligned_cols=32 Identities=41% Similarity=0.556 Sum_probs=30.2
Q ss_pred EEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHH
Q 010966 150 VAILGGGLMGSGIATALILSN-YPVILKEVNEK 181 (496)
Q Consensus 150 V~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~ 181 (496)
|.|||+|..|...|..|+++| ++|+++|+.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 899999999999999999999 99999998754
No 471
>PRK06196 oxidoreductase; Provisional
Probab=92.64 E-value=0.25 Score=49.54 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (496)
++|.|.|+ |-+|..++..|+..|++|++.+++++.++....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888887 899999999999999999999999887665543
No 472
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.61 E-value=0.099 Score=54.46 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=30.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 149 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
.|.|||+|..|.++|..|+++|++|+++|..+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999876
No 473
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=92.59 E-value=0.12 Score=56.16 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
..|.|||+|.+|.++|..|++.|++|+++|.+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 479999999999999999999999999999853
No 474
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.59 E-value=0.35 Score=44.19 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=31.0
Q ss_pred ccceEEEEEeCChhhHHHHH-HHH-hCCCc-EEEEeCCHHHH
Q 010966 145 RRVKKVAILGGGLMGSGIAT-ALI-LSNYP-VILKEVNEKFL 183 (496)
Q Consensus 145 ~~~~kV~VIGaG~mG~~iA~-~la-~~G~~-V~l~d~~~~~~ 183 (496)
..+.+|.+||+|++|.+++. .+. ++|++ |-++|.+++.+
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V 123 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV 123 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh
Confidence 45789999999999999995 344 56775 66789999854
No 475
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.58 E-value=0.28 Score=46.96 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=35.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
++|.|+|+ |.+|..++..|+..|++|++.+++++..+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 58999987 99999999999999999999999997765543
No 476
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.58 E-value=0.16 Score=50.76 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (496)
++|.|+|+ |.+|+.++..|++.|++|++++++++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 47899986 999999999999999999999998764
No 477
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.54 E-value=0.32 Score=46.19 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=35.0
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
.++|.|.|+ |.+|..++..|+++|++|++++++++..+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 368999987 9999999999999999999999998766543
No 478
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.54 E-value=0.46 Score=44.04 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=57.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc--cC----
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD---- 220 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 220 (496)
++|.|||- ...|.++|..|.+.|..|++.|.+--..-. +.+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 68999998 456999999999999999999876432210 00000 00001 12
Q ss_pred c-ccccCCCEEEEeccCChH-HHHHHHHHHHhhCCCCeeEeccCCcc
Q 010966 221 Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTI 265 (496)
Q Consensus 221 ~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~~ 265 (496)
+ +.++.||+||-|++..-- ++.+ .+++++++++.....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASIK 159 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCCc
Confidence 2 347899999999975432 3333 467899987765443
No 479
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.53 E-value=3.4 Score=41.56 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=36.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (496)
.+|+|+|+|-+|.+-.+....+|- .++.+|+++++++.++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 479999999999999999988886 7999999999988765
No 480
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.52 E-value=0.78 Score=48.52 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=32.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
.++|.|+|.|..|.++|..|+..|++|+++|.++.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35899999999999999999999999999998764
No 481
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.52 E-value=0.94 Score=37.44 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=60.5
Q ss_pred eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc-cCc---
Q 010966 148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY--- 221 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 221 (496)
.+|.-||+|.=.. +..+++ .|.+|+.+|.+++.++.+.+++. +.+ ...++++. .|.
T Consensus 3 ~~vLDlGcG~G~~--~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~---------~~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGTGRL--SIALARLFPGARVVGVDISPEMLEIARERAA-------EEG---------LSDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTTSHH--HHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTT---------TTTTEEEEESCCHGG
T ss_pred CEEEEEcCcCCHH--HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcC---------CCCCeEEEECccccC
Confidence 4788999987333 333444 89999999999999998876541 111 11233322 222
Q ss_pred -ccccCCCEEEEec-----cCChHHHHHHHHHHHhhCCCCeeEec
Q 010966 222 -ESFKDVDMVIEAI-----IENVSLKQQIFADLEKYCPPHCILAS 260 (496)
Q Consensus 222 -~~~~~aDlVIeav-----~e~~~~k~~v~~~l~~~~~~~~il~s 260 (496)
+.....|+|+..- .-..+..+.+++.+.+.++|+..++.
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 2345689888765 11224567788999999988876653
No 482
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.48 E-value=0.3 Score=49.95 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=60.2
Q ss_pred ceEEEEEe-CChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceec-ccCccc
Q 010966 147 VKKVAILG-GGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES 223 (496)
Q Consensus 147 ~~kV~VIG-aG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 223 (496)
+.||+|+| .|.+|..+...+..+.. +++++..+++...+-...+ +. ....|.+.. ....+.. ..+.+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~---~~-~~~~~~~~~-----~~~~~~v~~~~~~~ 73 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEA---VR-WQLDGPIPE-----EVADMEVVSTDPEA 73 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccccc---cc-ccccccccc-----cccceEEEeCCHHH
Confidence 47999998 69999999999987654 8888866654432211100 00 000000000 0011112 123455
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCCcccH
Q 010966 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (496)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~~~~ 267 (496)
+.++|+|+.|+|.+.. .++...+. ..++.++++++....
T Consensus 74 ~~~~DvVf~a~p~~~s--~~~~~~~~---~~G~~vIDls~~fR~ 112 (349)
T PRK08664 74 VDDVDIVFSALPSDVA--GEVEEEFA---KAGKPVFSNASAHRM 112 (349)
T ss_pred hcCCCEEEEeCChhHH--HHHHHHHH---HCCCEEEECCchhcC
Confidence 6789999999997643 33333332 356767777776533
No 483
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.27 Score=47.54 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=35.0
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 147 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
|++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 357889986 9999999999999999999999998876654
No 484
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.45 E-value=0.22 Score=48.32 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=34.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (496)
+.+.|.|+ |.+|..++..|+..|++|++.+++++.++...+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEA 50 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 35777777 789999999999999999999999987766543
No 485
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.39 E-value=0.59 Score=46.55 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=32.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (496)
+.|.|||+|.-|+--|..++++|++|.+++..+.+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 47999999999999999999999999999987754
No 486
>PRK06185 hypothetical protein; Provisional
Probab=92.28 E-value=0.14 Score=53.27 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
..|.|||+|..|.+.|..|+++|++|+++|.++.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4799999999999999999999999999998753
No 487
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=92.26 E-value=0.14 Score=53.38 Aligned_cols=33 Identities=30% Similarity=0.244 Sum_probs=29.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILS-NY-PVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~-G~-~V~l~d~~~ 180 (496)
..|.|||+|.+|.++|..|++. |. +|+++|++.
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 4799999999999999999985 95 999999863
No 488
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.26 E-value=0.34 Score=44.01 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=34.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (496)
-.+|.|+|+|..|.+.+..+..-|++|+.+|.+++.++..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~ 59 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL 59 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence 3699999999999999999999999999999999877653
No 489
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.25 E-value=0.3 Score=51.93 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.9
Q ss_pred ceEEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 010966 147 VKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK 181 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~-iA~~la~~G~~V~l~d~~~~ 181 (496)
.++|.|||.|..|.+ +|..|.+.|++|+++|.++.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 468999999999999 79999999999999998754
No 490
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.24 E-value=0.33 Score=46.12 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=34.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 010966 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (496)
Q Consensus 148 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (496)
++|.|+|+ |.+|..++..|+..|++|++.+++++.++...
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 57889986 99999999999999999999999987766543
No 491
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=92.24 E-value=0.19 Score=53.30 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=33.5
Q ss_pred cccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 144 ~~~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+.+...|.|||+|.-|+..|..|+++|++|+++|+.+.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 34456899999999999999999999999999998753
No 492
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.24 E-value=0.14 Score=53.03 Aligned_cols=33 Identities=30% Similarity=0.603 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
.+|.|||+|..|.+.|..|+++|++|+++|..+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 579999999999999999999999999999875
No 493
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.23 E-value=0.66 Score=46.37 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEA 185 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~ 185 (496)
.+|.|+|+|.+|...++.+...|.+ |++.|.++++++.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~ 184 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDG 184 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHh
Confidence 3689999999999988888788986 6677888877654
No 494
>PLN02985 squalene monooxygenase
Probab=92.20 E-value=0.19 Score=54.26 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=31.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 010966 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 180 (496)
..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4589999999999999999999999999999975
No 495
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.14 E-value=0.36 Score=48.07 Aligned_cols=100 Identities=17% Similarity=0.090 Sum_probs=68.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCcccccC
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (496)
++++|||.|.+|+-.|.++-.-|..|+.+|.- +.....+ .| +...+-.|.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~g-------------vq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------FG-------------VQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------cc-------------ceeeeHHHHHhh
Confidence 68999999999999999999899999999864 3322221 12 112222345788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhCCCCeeEeccCC---cccHHHHHhhh
Q 010966 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERT 274 (496)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~~~~~~la~~~ 274 (496)
||+|-.=+|-.++.++-+-.+-...++++.-|+ |+| -+....+-..+
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al 250 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRAL 250 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHH
Confidence 999999888877777666666666778887554 333 34555555555
No 496
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.11 E-value=3.7 Score=42.20 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=99.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecc---cCcc
Q 010966 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV---LDYE 222 (496)
Q Consensus 147 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~ 222 (496)
|.+|-|+|+|..+-.+|..|-+.+. +|-++.|...+.+...+.+.+.- ..+ ...+..+.....-+..... .+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~-~~~-~v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSD-GLF-EVSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCC-CEE-EEeecchhhhhhcCeEEhhHhhcCHH
Confidence 5689999999999999999988765 79999997666555443332210 000 0011111122222222222 2344
Q ss_pred cc-cCCCEEEEeccCChHHHHHHHHHHHhhCC---CCeeEeccC--CcccHHHHHhhhcCCCeeeecc-------cc--C
Q 010966 223 SF-KDVDMVIEAIIENVSLKQQIFADLEKYCP---PHCILASNT--STIDLNLIGERTYSKDRIVGAH-------FF--S 287 (496)
Q Consensus 223 ~~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~---~~~il~snt--S~~~~~~la~~~~~~~r~ig~h-------f~--~ 287 (496)
.+ .+=|.+|.|+|.|. -..|+++|....- ...|++|-| |.+-+..+.........++... |. .
T Consensus 79 ~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred HhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 43 45699999999875 3466666543221 233555543 4455565555554333333322 11 1
Q ss_pred cCC-C----CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceEEec
Q 010966 288 PAH-V----MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (496)
Q Consensus 288 P~~-~----~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~v~v~ 326 (496)
|++ . .+---.+.+...+...+..+..+++.+|-....+.
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 221 1 01111445556677788999999999999888875
No 497
>PRK11579 putative oxidoreductase; Provisional
Probab=92.10 E-value=0.5 Score=48.23 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=44.2
Q ss_pred eEEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcceecccCccc-
Q 010966 148 KKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (496)
Q Consensus 148 ~kV~VIGaG~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (496)
.||+|||+|.||.. .+..+.. .+++++ ++|++++++.. +.+ .....+|+++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~el 59 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVSEPQHL 59 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeCCHHHH
Confidence 58999999999985 4555554 367764 78998765321 001 1123456654
Q ss_pred c--cCCCEEEEeccCChHH
Q 010966 224 F--KDVDMVIEAIIENVSL 240 (496)
Q Consensus 224 ~--~~aDlVIeav~e~~~~ 240 (496)
+ .+.|+|+.|+|.....
T Consensus 60 l~~~~vD~V~I~tp~~~H~ 78 (346)
T PRK11579 60 FNDPNIDLIVIPTPNDTHF 78 (346)
T ss_pred hcCCCCCEEEEcCCcHHHH
Confidence 3 3689999999976543
No 498
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=92.06 E-value=0.49 Score=54.89 Aligned_cols=162 Identities=13% Similarity=0.038 Sum_probs=81.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHhh---------
Q 010966 148 KKVAILGGGLMGSGIATALILSNY------PVILKEVNEKFLEAGIGRVRANL-QSRVKKGKMTQEKFEKT--------- 211 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~-~~~~~~g~~~~~~~~~~--------- 211 (496)
.||.|||+|..|+.++..|+..|+ +++++|.+.=..... ++++ -+.-.-|+.....+...
T Consensus 420 ~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL----nRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~ 495 (1008)
T TIGR01408 420 LNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL----NRQFLFRPHHIGKPKSYTAADATLKINPQIK 495 (1008)
T ss_pred CcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc----CcCcCCChhHcCcHHHHHHHHHHHHHCCCCE
Confidence 479999999999999999999998 899999764211110 0000 00000011100000100
Q ss_pred ----hcceeccc-Cc---ccccCCCEEEEeccCChHHHHHHHHHHHhhCCCCeeEe-ccCCcccHHHHHhhhcCCCeeee
Q 010966 212 ----ISLLTGVL-DY---ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTSTIDLNLIGERTYSKDRIVG 282 (496)
Q Consensus 212 ----~~~i~~~~-~~---~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS~~~~~~la~~~~~~~r~ig 282 (496)
..++...+ +. +-+++.|+||.|+- +.+.+.-+-..... .+..++ +.+.+..- ...-..++-....+
T Consensus 496 I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alD-n~~aR~~vn~~c~~---~~iPli~~gt~G~~G-~v~v~ip~~te~y~ 570 (1008)
T TIGR01408 496 IDAHQNRVGPETETIFNDEFYEKLDVVINALD-NVEARRYVDSRCLA---FLKPLLESGTLGTKG-NTQVVVPHLTESYG 570 (1008)
T ss_pred EEEEEeecChhhhhhhhHHHhhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEeccCcee-eEEEEeCCCcCCCC
Confidence 01111101 11 12478999999873 44444322222222 233333 33322211 11111111111233
Q ss_pred ccccCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 010966 283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKI 318 (496)
Q Consensus 283 ~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~l 318 (496)
.|+..|....|..++-..|..-..+++.++++++.+
T Consensus 571 ~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~ 606 (1008)
T TIGR01408 571 SSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGL 606 (1008)
T ss_pred CCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHH
Confidence 343333334688888888888899999999988763
No 499
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.06 E-value=0.13 Score=55.58 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=28.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 181 (496)
+||+|||+|.-|...++.|...|++|++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 6899999999999999999999999999998764
No 500
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.05 E-value=0.15 Score=53.39 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=31.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHH
Q 010966 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEK 181 (496)
Q Consensus 148 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~ 181 (496)
+||+|||+|.-|.+.|..|+++| ++|++++++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 48999999999999999999998 59999999865
Done!