BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010967
         (496 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
           Threonine-Sensitive Aspartokinase From Methanococcus
           Jannaschii With L-Threonine
 pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
           From Methanococcus Jannaschii With L-Aspartate
 pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
           From Methanococcus Jannaschii With L-Aspartate
 pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
           From Methanococcus Jannaschii With Mgamp-Pnp And
           L-Aspartate
 pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
           From Methanococcus Jannaschii With Mgamp-Pnp And
           L-Aspartate
 pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
           From Methanococcus Jannaschii With Mgamp-Pnp And
           L-Aspartate
 pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
           From Methanococcus Jannaschii With Mgamp-Pnp And
           L-Aspartate
 pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
           Threonine-Sensitive Aspartokinase From Methanococcus
           Jannaschii With L-Threonine
 pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
           Threonine-Sensitive Aspartokinase From Methanococcus
           Jannaschii With L-Threonine
 pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
           Threonine-Sensitive Aspartokinase From Methanococcus
           Jannaschii With L-Threonine
          Length = 473

 Score = 36.6 bits (83), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 345 NPQSRDIILQLVERILSSPKARTILVNGAVRK-GERLVPPSALETLLRLTFPTSSARVKA 403
            P+SRD IL   ER LSSP     +++GA+R  GE+ +     E  +       SARVK 
Sbjct: 118 TPKSRDYILSFGER-LSSP-----ILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKR 171

Query: 404 TERFEAIYPTLKEVALAGVPG 424
            E  E + P LKE  +  V G
Sbjct: 172 LEVKERLLPLLKEGIIPVVTG 192


>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
           Methanococcus Jannaschii Complexed With Mg-Adp And
           Aspartate
 pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
           Methanococcus Jannaschii Complexed With Mg-Adp And
           Aspartate
 pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
           Methanococcus Jannaschii Complexed With Mg-Adp And
           Aspartate
 pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
           Methanococcus Jannaschii Complexed With Mg-Adp And
           Aspartate
          Length = 469

 Score = 36.6 bits (83), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 345 NPQSRDIILQLVERILSSPKARTILVNGAVRK-GERLVPPSALETLLRLTFPTSSARVKA 403
            P+SRD IL   ER LSSP     +++GA+R  GE+ +     E  +       SARVK 
Sbjct: 117 TPKSRDYILSFGER-LSSP-----ILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKR 170

Query: 404 TERFEAIYPTLKEVALAGVPG 424
            E  E + P LKE  +  V G
Sbjct: 171 LEVKERLLPLLKEGIIPVVTG 191


>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
           Conformation-Based Mechanisms For A Microtubule
           Polymerase
          Length = 463

 Score = 28.9 bits (63), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 160 IDISGTYEDKQDIQMMRFADYFGRAFSG 187
           +D +GTY    DIQ  R   YF  A SG
Sbjct: 30  LDFNGTYHGHDDIQKERLNVYFNEASSG 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,114,572
Number of Sequences: 62578
Number of extensions: 428875
Number of successful extensions: 1005
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 6
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)