Query 010967
Match_columns 496
No_of_seqs 43 out of 45
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 06:35:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4467 Uncharacterized conser 100.0 2E-155 5E-160 1167.6 20.7 434 1-488 1-438 (557)
2 PF10151 DUF2359: Uncharacteri 100.0 1.2E-49 2.5E-54 412.6 16.5 199 274-489 2-204 (469)
3 PRK00964 tetrahydromethanopter 40.8 52 0.0011 33.3 5.2 81 352-441 59-154 (225)
4 PF04652 DUF605: Vta1 like; I 37.8 50 0.0011 33.7 4.7 115 317-480 11-125 (380)
5 PF14617 CMS1: U3-containing 9 37.6 25 0.00055 35.5 2.5 26 214-239 82-107 (252)
6 KOG4695 Uncharacterized conser 33.6 13 0.00028 34.2 -0.1 58 411-473 5-63 (122)
7 KOG0970 DNA polymerase alpha, 33.1 32 0.00069 41.9 2.7 41 32-72 8-51 (1429)
8 PF12530 DUF3730: Protein of u 33.1 1.6E+02 0.0034 28.8 7.1 120 347-477 34-166 (234)
9 TIGR01111 mtrA N5-methyltetrah 33.0 80 0.0017 32.3 5.1 81 352-441 59-154 (238)
10 PRK14053 methyltransferase; Pr 32.4 1E+02 0.0022 30.7 5.6 73 352-430 52-139 (194)
11 PF03000 NPH3: NPH3 family; I 31.7 1.7E+02 0.0036 29.9 7.2 91 312-415 116-237 (258)
12 PF04147 Nop14: Nop14-like fam 31.7 99 0.0022 36.1 6.3 58 301-359 556-620 (840)
13 PF06431 Polyoma_lg_T_C: Polyo 31.4 68 0.0015 35.1 4.6 86 284-389 91-179 (417)
14 COG0362 Gnd 6-phosphogluconate 31.2 23 0.0005 38.9 1.2 76 156-242 369-444 (473)
15 KOG1789 Endocytosis protein RM 29.8 50 0.0011 40.6 3.6 190 166-364 1626-1844(2235)
16 PF05327 RRN3: RNA polymerase 29.5 2.3E+02 0.0049 31.5 8.3 175 151-356 27-206 (563)
17 PHA00687 hypothetical protein 27.0 52 0.0011 26.5 2.2 37 378-414 8-53 (56)
18 KOG2890 Predicted membrane pro 26.1 47 0.001 35.2 2.3 41 70-115 285-325 (326)
19 PF15387 DUF4611: Domain of un 24.3 2.3E+02 0.005 25.6 5.8 13 104-116 66-78 (96)
20 PF04208 MtrA: Tetrahydrometha 23.4 1.1E+02 0.0023 30.2 4.0 82 352-441 55-150 (176)
21 KOG2002 TPR-containing nuclear 22.7 1.2E+02 0.0025 36.6 4.8 9 166-174 970-978 (1018)
22 KOG0943 Predicted ubiquitin-pr 22.1 51 0.0011 41.0 1.8 25 306-339 2020-2044(3015)
23 PLN02705 beta-amylase 21.5 1.4E+02 0.003 34.6 4.9 14 76-89 92-105 (681)
No 1
>KOG4467 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-155 Score=1167.62 Aligned_cols=434 Identities=60% Similarity=0.883 Sum_probs=419.8
Q ss_pred CCCcceeecccCccccccCCCCCCCCCceeeehhhhhcCCCCCCCCcc---cccccCCCCCCCCCCchhhHHHHHhHHHH
Q 010967 1 MEPVLIESNVNGASEVHNNNNANVDHGWQKVTYAKRQRKTKPGADPSN---ALVAANGGAGSSGEKNNVFRNLEQQAEER 77 (496)
Q Consensus 1 ~~~~~ie~~~~~~~~~~~~~~~~~dhGWqkVt~~Kr~rk~~~~~~~~~---~~~~~~g~~~~~~~~~~vf~~le~~ae~r 77 (496)
|.| ||+..|++++ +.++++||||+||+||||+|||||+|++++ .-+++||| ++||+ .|||||||.|||+|
T Consensus 1 mdp--iesveynGFe---t~ngn~dhgWkkvvyPkr~rkqk~adqa~a~gg~t~~~ngt-~~ngg-~nvfrSLeeqAe~r 73 (557)
T KOG4467|consen 1 MDP--IESVEYNGFE---TLNGNDDHGWKKVVYPKRNRKQKPADQAAALGGVTLIPNGT-LSNGG-GNVFRSLEEQAETR 73 (557)
T ss_pred CCh--HHhhhhcccc---ccCCCcccceeeeecccccccccchhhhhhcCCceeccCcc-ccCCC-cchhhcccHHHHHH
Confidence 889 9999999999 455669999999999999999999999984 34567998 87766 99999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCccc-CCCCCCCCCCCchhHHHhhhcCCCCCCCCCCCCCCCCCcccHHHHHhcCChhhHH
Q 010967 78 HLRIIGARQAALSAAASESAPARS-KHRSDDEYDEDSDADVAAAENGKAEEPKKPKQKKPKKPKITVAEAAAKLDATDLS 156 (496)
Q Consensus 78 ~~~~~~a~~~a~~~~~~~~~~~~~-~~~~~de~~d~d~~~~~~~~~~~~~e~kk~K~kk~kkpKvsvaeAAakID~sdLa 156 (496)
|+||++++..+.++++++..||+| +++++|+++|+||+|++.+ -.|.||.||||+||.||||||+.|||.||||.+|.
T Consensus 74 ~~riLaak~~~~~~d~~~~~rsk~rsnGyGd~GyDFd~sd~eia-~lk~eevkkpkpkk~kkPkvsL~Eaa~kidplnl~ 152 (557)
T KOG4467|consen 74 LDRILAAKPNSDTADVSDGGRSKWRSNGYGDIGYDFDDSDSEIA-VLKLEEVKKPKPKKSKKPKVSLQEAACKIDPLNLL 152 (557)
T ss_pred HHHHHhcCCCccccccccccchhhccccCCccccccCCccchhh-eeeHHHhcccCcccccCCcccHHHHHhccCHHHHH
Confidence 999999999999999999999999 9999999999999988653 47899999999999999999999999999999999
Q ss_pred HHHHhhhccccccchhhHHHHHhHHhhhccCCcccCCchhhhccccchhhhhccCCCCCChhhhhhhhhhhccCChhhhh
Q 010967 157 AFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLG 236 (496)
Q Consensus 157 afL~~is~sY~~~pdiQLmRFaDYFgrafs~Vss~qfpW~kMfkespl~klidvPL~hIpe~VyktSvdWI~q~~~~aL~ 236 (496)
+||++.+ +||+|||+|||+|++|||||+|+|+|+
T Consensus 153 AFlveas----------------------------------------------~pL~Hipepvyktsadwin~rPiEalg 186 (557)
T KOG4467|consen 153 AFLVEAS----------------------------------------------SPLSHIPEPVYKTSADWINQRPIEALG 186 (557)
T ss_pred HHhcCCC----------------------------------------------CccccCCcchhhccCCccccCCHHHHH
Confidence 9999876 799999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccchHHHHHHHHHHHhcChhHHHhhhhhhhhhccccCCCCchHHHHHH
Q 010967 237 SFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMI 316 (496)
Q Consensus 237 sFVlW~ln~IL~dL~~qqgg~kg~k~~~q~~s~ksqVaifV~LAMVLR~kP~vL~~vlptlr~~~kyqg~dkLPv~vWmi 316 (496)
.||+|.++||+.|+..||||.||||||.||++|||||+|||+||||||++||.|+++|||+|+|+||||||+|||+||||
T Consensus 187 afvlw~~dCil~Dla~qqgg~kggkKg~qQs~Sksqvaifvalamvlr~kPdaltn~LptlrenpKyqgQdkLpvtvwmm 266 (557)
T KOG4467|consen 187 AFVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVALAMVLRQKPDALTNSLPTLRENPKYQGQDKLPVTVWMM 266 (557)
T ss_pred HHHHHHHHHHhccHHHHhhhhhhcccccccccchhHHHHHHHHHHHHHhccHHHHHhhHHHHhCccccCcccchHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhhHHHHhhhhhhccccCCCCCcchHHHHHHHHHHHhcCcccceeeeccccccCCccCCchHHHHHHHHhCCC
Q 010967 317 AQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPT 396 (496)
Q Consensus 317 aQAsqgDL~vGly~WahnLLP~v~gk~~nPqSrDliLQlvE~iLs~pkArtiLvngavrkgerliPP~sfeillR~tFP~ 396 (496)
+||+|||++||+|+|+|||||+++.++|||||||+||||||+||++|||||||+|||||+|||||||++||||+|+|||+
T Consensus 267 aqasQgDi~vglyswahnLlpVvg~k~cnPqsRdLiLqLVe~il~npkaRtilvngAvrkGeRLipppsFeil~rltfPA 346 (557)
T KOG4467|consen 267 AQASQGDIVVGLYSWAHNLLPVVGPKSCNPQSRDLILQLVEAILLNPKARTILVNGAVRKGERLIPPPSFEILVRLTFPA 346 (557)
T ss_pred hccccCCeeeeehhhhcccccccCCCCCCchHHHHHHHHHHHHHcCchHhHHhhhhhhhcCccccCCCcchhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhhHhhhhhhhHHHhcCCCCchhHHHHHHHHHHHHHHHhccCCchhhHhhHhhhhhhcccCchHHHhHHhhh
Q 010967 397 SSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWVSYS 476 (496)
Q Consensus 397 ssaRvKateRfeAiyP~LKevALaG~~gskamkqv~qqif~~slk~age~np~LakEa~~i~IWcLtqn~dc~k~We~ly 476 (496)
||||||||||||||||+||||+|+|.||||+||||+||||+|++|.+||.||.|++||++|.||.+|||+||||||+|+|
T Consensus 347 SsArvKaterfeaiYplLkEv~lagapGSkamkqVtqqiftfAlk~age~np~Lakeaaai~iW~~tqn~Dcckhw~nly 426 (557)
T KOG4467|consen 347 SSARVKATERFEAIYPLLKEVSLAGAPGSKAMKQVTQQIFTFALKHAGETNPFLAKEAAAILIWFGTQNVDCCKHWSNLY 426 (557)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhccCCCchHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhhhh
Q 010967 477 HQTLYADTRWFL 488 (496)
Q Consensus 477 ~eNl~asva~~~ 488 (496)
++||++||+-.+
T Consensus 427 ~~nL~aSVavLk 438 (557)
T KOG4467|consen 427 QINLPASVAVLK 438 (557)
T ss_pred HhhchhHHHHHH
Confidence 999999999654
No 2
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=100.00 E-value=1.2e-49 Score=412.62 Aligned_cols=199 Identities=42% Similarity=0.706 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhcChhHHHhhhhhhhh--hccccCCCCchHHHHHHHHhhhcchhhHHHHhhhhhhccccCCCCCcchHHH
Q 010967 274 AIFVALAMVLRRKPDVLIGVLPALRE--NAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDI 351 (496)
Q Consensus 274 aifV~LAMVLR~kP~vL~~vlptlr~--~~kyqg~dkLPv~vWmiaQAsqgDL~vGly~WahnLLP~v~gk~~nPqSrDl 351 (496)
|..|.|+||+|++|+++++.||++.+ |++.+.+.+.++|+|||+||++|||+|||++|.|++||++.+|+.+ +.
T Consensus 2 Gyki~LQ~i~~~~P~i~~~nL~k~~~lr~s~qnr~~~~LsilWaigQag~~DL~vGLkvW~~~mLP~l~~K~~s----~~ 77 (469)
T PF10151_consen 2 GYKICLQAIAQSKPDICTNNLPKYAELRNSYQNRPNICLSILWAIGQAGQGDLSVGLKVWQHLMLPVLELKSYS----PY 77 (469)
T ss_pred cHHHHHHHHHccCcHHHHHhHHHHHHHHHhhhcCCchhHHHHHHHhcccccchHHHHHHHHHhhhhhccCCCcc----hH
Confidence 45789999999999999999999877 4555668999999999999999999999999999999999998854 57
Q ss_pred HHHHHHHHhcCcccceeeeccccccCCccCCchHHHHHHHHhCCCCccchhh-hhhhHhhhhhhhHHHhcCCCCchhHHH
Q 010967 352 ILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKA-TERFEAIYPTLKEVALAGVPGSKAMKQ 430 (496)
Q Consensus 352 iLQlvE~iLs~pkArtiLvngavrkgerliPP~sfeillR~tFP~ssaRvKa-teRfeAiyP~LKevALaG~~gskamkq 430 (496)
++|++|+||+ +++++++|+|+|||+.|+++||+|||++++|+|+ ||||+++||.|||++++|.|||.+
T Consensus 78 vi~yleriL~--------~~~~~~~g~~li~p~~F~~ll~~~f~~~~~~~k~l~e~l~~~yp~LK~la~~~~p~s~~--- 146 (469)
T PF10151_consen 78 VIQYLERILS--------LHGNVTKGERLIPPQEFFPLLRLTFPPSNSLSKALQERLEAIYPRLKELAFAGKPGSTL--- 146 (469)
T ss_pred HHHHHHHHHh--------cCcccccCcCCCCHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhcCCchhHH---
Confidence 8999999997 8999999999999999999999999999999996 899999999999999999999953
Q ss_pred HHHHHHHHHHHHhc-cCCchhhHhhHhhhhhhcccCchHHHhHHhhhhhhcccchhhhhc
Q 010967 431 VSLQILSFAIKFAG-ESTPDLSNEAAGIFIWCLTQSADCYKHWVSYSHQTLYADTRWFLH 489 (496)
Q Consensus 431 v~qqif~~slk~ag-e~np~LakEa~~i~IWcLtqn~dc~k~We~ly~eNl~asva~~~~ 489 (496)
+++|+.-++.++ +.|+++.+|+++++|||||+|+||||+|++||++|+++|++-.-|
T Consensus 147 --~~~f~~~l~~~~~~~~~~~~~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~ 204 (469)
T PF10151_consen 147 --HTYFPSFLSKATPECPPELKKELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKH 204 (469)
T ss_pred --HHHHHHHHHHhcccCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356666556555 466789999999999999999999999999999999999986544
No 3
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=40.79 E-value=52 Score=33.32 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCcccceeeeccccccCCccCCchHHHHHHHHhCCCCccch---------------hhhhhhHhhhhhhhH
Q 010967 352 ILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARV---------------KATERFEAIYPTLKE 416 (496)
Q Consensus 352 iLQlvE~iLs~pkArtiLvngavrkgerliPP~sfeillR~tFP~ssaRv---------------KateRfeAiyP~LKe 416 (496)
|-+++..++|||+-|.++|-|. +-..-++=+||..|...=-. ..-|. .|++||.... .+
T Consensus 59 IEKvI~NvisNpNIRflilcG~--Ev~GH~tGqsl~aL~~NGvd-~~grIiGa~GaiPfleNi~~~aV~rFq~qV-ei-- 132 (225)
T PRK00964 59 IEKVIANVISNPNIRFLILCGS--EVQGHITGQSLKALHENGVD-DDGRIIGAKGAIPFLENVPDEAVERFQEQI-EI-- 132 (225)
T ss_pred HHHHHHHHhcCCCceEEEEecC--ccCCccccHHHHHHHHcCCC-CCCCCccCCCCCchhhcCCHHHHHHHHhhe-EE--
Confidence 6788899999999999999993 33578999999999998543 22222 8899999865 22
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHH
Q 010967 417 VALAGVPGSKAMKQVSLQILSFAIK 441 (496)
Q Consensus 417 vALaG~~gskamkqv~qqif~~slk 441 (496)
|=|.| .+=+..++++|=.+.-|
T Consensus 133 vd~i~---~eD~~~I~a~I~ec~~k 154 (225)
T PRK00964 133 VDLID---TEDPGAITAKIKECIAK 154 (225)
T ss_pred Eeeec---CCCHHHHHHHHHHHHcc
Confidence 12344 44444444555555444
No 4
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=37.79 E-value=50 Score=33.73 Aligned_cols=115 Identities=10% Similarity=0.120 Sum_probs=68.1
Q ss_pred HHhhhcchhhHHHHhhhhhhccccCCCCCcchHHHHHHHHHHHhcCcccceeeeccccccCCccCCchHHHHHHHHhCCC
Q 010967 317 AQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPT 396 (496)
Q Consensus 317 aQAsqgDL~vGly~WahnLLP~v~gk~~nPqSrDliLQlvE~iLs~pkArtiLvngavrkgerliPP~sfeillR~tFP~ 396 (496)
.|-.+-|.+|+.||..|.+==++..+...++.++.++.|++.+=.
T Consensus 11 ~e~~~~~p~v~Y~c~~ya~~~~l~~~~~~~e~~~~~~~Ll~~lE~----------------------------------- 55 (380)
T PF04652_consen 11 QELEKRDPVVAYYCRLYAVEQILKLKLRSKECRQFLTSLLDKLEK----------------------------------- 55 (380)
T ss_dssp HHHHHCTHHHHHHHHHHHHHHHTT-TT--HHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHhhcCCEEhHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHH-----------------------------------
Confidence 344456789999999997765555444567777777777665531
Q ss_pred CccchhhhhhhHhhhhhhhHHHhcCCCCchhHHHHHHHHHHHHHHHhccCCchhhHhhHhhhhhhcccCchHHHhHHhhh
Q 010967 397 SSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWVSYS 476 (496)
Q Consensus 397 ssaRvKateRfeAiyP~LKevALaG~~gskamkqv~qqif~~slk~age~np~LakEa~~i~IWcLtqn~dc~k~We~ly 476 (496)
+++-..-...| +=..-|..-+.+.|.+||..+.+.-..|+... .+.-..||-.---||+++|..|-
T Consensus 56 ----------~K~~~~~~~~~-~~~~~~~~~v~~fa~~~f~~a~~~~~~~~~~~---~~~~~f~~a~~~~~~l~~f~~~~ 121 (380)
T PF04652_consen 56 ----------MKAELGDNEAI-LDDVAAQAYVENFALKLFNRADKEDRAGRATK---QTAKTFYAASTFFEVLNIFGELD 121 (380)
T ss_dssp ----------HHHCT---CHH-C-HHHHHHHHHHHHHHHHHHHHHHHHSS--SH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hhhccCcHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHHHHHHHhCCCC
Confidence 11111100000 01111244567778999999999776655332 55566777777789999998775
Q ss_pred hhhc
Q 010967 477 HQTL 480 (496)
Q Consensus 477 ~eNl 480 (496)
.|+.
T Consensus 122 ~~~~ 125 (380)
T PF04652_consen 122 EEIE 125 (380)
T ss_dssp HHHH
T ss_pred hHHh
Confidence 5554
No 5
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=37.63 E-value=25 Score=35.53 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCChhhhhhhhhhhccCChhhhhHHH
Q 010967 214 QIPDVVYKTSIDWINQRSPEVLGSFV 239 (496)
Q Consensus 214 hIpe~VyktSvdWI~q~~~~aL~sFV 239 (496)
+||+.-+.-+.+|-..|..+.|++|+
T Consensus 82 ~i~~s~f~dt~~~~~~r~l~nL~~fL 107 (252)
T PF14617_consen 82 YIPESAFLDTSSFTKPRTLDNLPSFL 107 (252)
T ss_pred ccCHHhcccccccCCCcccchHHHHH
Confidence 68888888889999999999999983
No 6
>KOG4695 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.59 E-value=13 Score=34.24 Aligned_cols=58 Identities=28% Similarity=0.281 Sum_probs=36.0
Q ss_pred hhhhhHHHhcCCCCchhHHHHHHHHHHHHHHH-hccCCchhhHhhHhhhhhhcccCchHHHhHH
Q 010967 411 YPTLKEVALAGVPGSKAMKQVSLQILSFAIKF-AGESTPDLSNEAAGIFIWCLTQSADCYKHWV 473 (496)
Q Consensus 411 yP~LKevALaG~~gskamkqv~qqif~~slk~-age~np~LakEa~~i~IWcLtqn~dc~k~We 473 (496)
-|+|++-+++ +|+. -+.|-+.|+|+.+|- -|+|-.+=.-|++- |=-+.----|+|+||
T Consensus 5 ~pll~~r~~a--~g~p-k~~vf~eilPL~lkNrv~~g~~~~gs~~tC--~qEm~vlfaClK~nE 63 (122)
T KOG4695|consen 5 TPLLRGRLAA--FGNP-KKPVFKEILPLILKNRVGEGRREKGSEATC--IQEMSVLFACLKQNE 63 (122)
T ss_pred cHHHHHHHhc--cCCC-CCCccccchhHHHhhhhccccCCcccchHH--HHHHHHHHHHHHhcc
Confidence 4788887777 6663 255778999999996 56654444334331 111222346888887
No 7
>KOG0970 consensus DNA polymerase alpha, catalytic subunit [Replication, recombination and repair]
Probab=33.12 E-value=32 Score=41.89 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=19.2
Q ss_pred ehhhhhcCCCCCCCCc-ccccccCCC--CCCCCCCchhhHHHHH
Q 010967 32 TYAKRQRKTKPGADPS-NALVAANGG--AGSSGEKNNVFRNLEQ 72 (496)
Q Consensus 32 t~~Kr~rk~~~~~~~~-~~~~~~~g~--~~~~~~~~~vf~~le~ 72 (496)
+.+||+|+++....++ -.|=++.|+ .--...-..||.-++.
T Consensus 8 s~~rR~~~~ks~r~~alerLk~ar~s~~~Ye~e~~~~vYD~VDe 51 (1429)
T KOG0970|consen 8 SRRRRSRGSKSSRLAALERLKAARTSGDKYEVEEVEDVYDTVDE 51 (1429)
T ss_pred hhhhhhccCchhhHHHHHHHHHhhccCcccccccccccccccCH
Confidence 4567777755443332 122222222 1112334567777765
No 8
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=33.08 E-value=1.6e+02 Score=28.77 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHhcCcccce-----eeeccccccCCccCCchHHHHHHH----HhCCCCccchhhhhhhHhhh---hhh
Q 010967 347 QSRDIILQLVERILSSPKART-----ILVNGAVRKGERLVPPSALETLLR----LTFPTSSARVKATERFEAIY---PTL 414 (496)
Q Consensus 347 qSrDliLQlvE~iLs~pkArt-----iLvngavrkgerliPP~sfeillR----~tFP~ssaRvKateRfeAiy---P~L 414 (496)
..+-+++|.+....+.++++. .|++--...++|.. |.--+++.. .....+ .-.+.++-.| ..+
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~----~~~~~~~~~i~~a~s~ 108 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFS----SKDEFWECLISIAASI 108 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccC----CCcchHHHHHHHHHHH
Confidence 667777777777777777776 66776666667766 333333333 222222 2234455444 478
Q ss_pred hHHHhcCCCCchhHHHHHHHHHHHHHHHhccCCchhhHhhH-hhhhhhcccCchHHHhHHhhhh
Q 010967 415 KEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAA-GIFIWCLTQSADCYKHWVSYSH 477 (496)
Q Consensus 415 KevALaG~~gskamkqv~qqif~~slk~age~np~LakEa~-~i~IWcLtqn~dc~k~We~ly~ 477 (496)
+++...-.. -+..+.+.|- -.|+ +.+++.-..-|. .|..=|=.+=+|.|+.|.-|-+
T Consensus 109 ~~ic~~~p~---~g~~ll~~ls-~~L~--~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~ 166 (234)
T PF12530_consen 109 RDICCSRPD---HGVDLLPLLS-GCLN--QSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK 166 (234)
T ss_pred HHHHHhChh---hHHHHHHHHH-HHHh--ccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 887555433 3333333322 2222 556655433333 3455566788999999976655
No 9
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=33.00 E-value=80 Score=32.28 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCcccceeeeccccccCCccCCchHHHHHHHHhCCCCccc---------------hhhhhhhHhhhhhhhH
Q 010967 352 ILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSAR---------------VKATERFEAIYPTLKE 416 (496)
Q Consensus 352 iLQlvE~iLs~pkArtiLvngavrkgerliPP~sfeillR~tFP~ssaR---------------vKateRfeAiyP~LKe 416 (496)
|-+++..++|||+-|.++|-|. +...-++-+||..|.+.--. .+.| -.+++||....- +
T Consensus 59 IEKvIaNvisNpNIRflilcG~--Ev~GHltGqsL~aLh~NGi~-e~grIiGa~GaiPfleNi~~~aVerFq~qVe-i-- 132 (238)
T TIGR01111 59 IEKVVANIISNPNIRFLILCGS--EVQGHITGQSFKALHENGVD-DDGRIIGALGAIPYLENINEEAVERFQEQIE-V-- 132 (238)
T ss_pred HHHHHHHHhcCCCceEEEEecC--cccCccccHHHHHHHHcCCC-CCCcEecCCCCCchhhcCCHHHHHHHHhheE-E--
Confidence 6788899999999999999993 44577999999999998443 2222 288999998742 2
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHH
Q 010967 417 VALAGVPGSKAMKQVSLQILSFAIK 441 (496)
Q Consensus 417 vALaG~~gskamkqv~qqif~~slk 441 (496)
|=|.|. +=+..++++|=.+.-|
T Consensus 133 VdlI~~---eD~~~I~~~I~ec~~k 154 (238)
T TIGR01111 133 VNLIDV---EDMGAITSKVKECASK 154 (238)
T ss_pred EeeecC---CCHHHHHHHHHHHHhc
Confidence 223444 4444444455555444
No 10
>PRK14053 methyltransferase; Provisional
Probab=32.38 E-value=1e+02 Score=30.72 Aligned_cols=73 Identities=14% Similarity=0.282 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCcccceeeeccccccCCccCCchHHHHHHHHhCCCCccc---------------hhhhhhhHhhhhhhhH
Q 010967 352 ILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSAR---------------VKATERFEAIYPTLKE 416 (496)
Q Consensus 352 iLQlvE~iLs~pkArtiLvngavrkgerliPP~sfeillR~tFP~ssaR---------------vKateRfeAiyP~LKe 416 (496)
|-+++..++|||+-|.++|-|. +...-++=+||..|.+.--+ ..-| -.|++||....-+
T Consensus 52 IEKvI~NvisNpNIRflilcG~--Ev~GHltGqsL~aL~~NGid-e~grIiGa~GaiPfleNi~~~aVerFq~QVei--- 125 (194)
T PRK14053 52 VEKIIVNVISNSNIRYVLLCGG--ESRGHLAGHSLLAIHANGID-EKGRIVGSEGAIPFIENISREAVQRFQQQVEL--- 125 (194)
T ss_pred HHHHHHHhhcCCCceEEEEecC--ccCCccccHHHHHHHHcCCC-CCCCCccCCCCCchhhcCCHHHHHHHHhheEE---
Confidence 6788899999999999999993 44577999999999998553 1222 2789999987332
Q ss_pred HHhcCCCCchhHHH
Q 010967 417 VALAGVPGSKAMKQ 430 (496)
Q Consensus 417 vALaG~~gskamkq 430 (496)
|=|.|...-.++.+
T Consensus 126 VD~Ig~eD~~~I~a 139 (194)
T PRK14053 126 LDRIGLTDLEEIRK 139 (194)
T ss_pred EEeecCCCHHHHHH
Confidence 23456555555554
No 11
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=31.70 E-value=1.7e+02 Score=29.94 Aligned_cols=91 Identities=26% Similarity=0.377 Sum_probs=52.7
Q ss_pred HHHHHHHhhhcchhhHHHHhhhhhhccccCCCC-CcchHHHHHHHHHHHhcCccc-----------------c-----ee
Q 010967 312 IVWMIAQASQGELAVGLYSWAHNLLPIVGGKNC-NPQSRDIILQLVERILSSPKA-----------------R-----TI 368 (496)
Q Consensus 312 ~vWmiaQAsqgDL~vGly~WahnLLP~v~gk~~-nPqSrDliLQlvE~iLs~pkA-----------------r-----ti 368 (496)
|....-||+..|| |+|. .+.+. +---.|+++++|+.+|+..+. . .-
T Consensus 116 Ig~qLd~AtldDL----------LIP~-~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~Vak 184 (258)
T PF03000_consen 116 IGSQLDQATLDDL----------LIPS-SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAK 184 (258)
T ss_pred HHHHhhhccHHHh----------cccC-CCCcccchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHH
Confidence 5777889988887 5566 21111 333459999999999986211 0 01
Q ss_pred eecccccc--CCccCCchHHHHHHHHhCCCCccch------hhhhhhHhhhhhhh
Q 010967 369 LVNGAVRK--GERLVPPSALETLLRLTFPTSSARV------KATERFEAIYPTLK 415 (496)
Q Consensus 369 Lvngavrk--gerliPP~sfeillR~tFP~ssaRv------KateRfeAiyP~LK 415 (496)
|+.|-..+ -|..+||.-|..|.. ++| .++|. +|.+-|-..-|.|.
T Consensus 185 LvD~YLaEiA~D~~L~~~kF~~Lae-~lP-~~aR~~hD~LYrAID~YLk~Hp~ls 237 (258)
T PF03000_consen 185 LVDGYLAEIAPDPNLKPSKFVALAE-ALP-DSARPSHDGLYRAIDIYLKAHPGLS 237 (258)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHH-HCC-HhhhhccchHHHHHHHHHHHcccCC
Confidence 22332222 267888888888777 455 34554 44444444444443
No 12
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=31.69 E-value=99 Score=36.05 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=31.8
Q ss_pred ccccCCCCchHHHHHHHHh------hhcchhhHHHHhhhhhhccccCCCC-CcchHHHHHHHHHHH
Q 010967 301 AKYQGQDKLPVIVWMIAQA------SQGELAVGLYSWAHNLLPIVGGKNC-NPQSRDIILQLVERI 359 (496)
Q Consensus 301 ~kyqg~dkLPv~vWmiaQA------sqgDL~vGly~WahnLLP~v~gk~~-nPqSrDliLQlvE~i 359 (496)
+-|.+|=-.|.++-|---- +.-|+..|||+=. .+|=.+..... .|+-..-++.++-..
T Consensus 556 SD~~HpVVTPalllm~~~L~q~~v~s~~di~~GlfL~~-l~l~y~~~SKR~vPEvinFL~~~L~~~ 620 (840)
T PF04147_consen 556 SDFRHPVVTPALLLMSEYLSQCRVRSLRDIASGLFLCT-LLLEYQSLSKRFVPEVINFLLGLLLLL 620 (840)
T ss_pred ccccCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 5677888888887653222 4467788887632 22323322222 676555554444433
No 13
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=31.43 E-value=68 Score=35.06 Aligned_cols=86 Identities=21% Similarity=0.445 Sum_probs=56.7
Q ss_pred hcChhHHHhhhhhhhh--hccccCCCCchHHHHHHHHhhhcchhhHHHHhhhhhhccccCCCCCcchHHHHHHHHHHHhc
Q 010967 284 RRKPDVLIGVLPALRE--NAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILS 361 (496)
Q Consensus 284 R~kP~vL~~vlptlr~--~~kyqg~dkLPv~vWmiaQAsqgDL~vGly~WahnLLP~v~gk~~nPqSrDliLQlvE~iLs 361 (496)
-+|-+.|..=+..+.. ...|...+..-+.-||.+= .|-|+|+|- -.|.|+++++.+..
T Consensus 91 ~TR~e~l~~Rf~~~l~~~~~~~~~~~~~~i~~~magv-----------aw~~~L~~~---------~~~~i~~iL~~lv~ 150 (417)
T PF06431_consen 91 MTRNELLAERFKKLLDKMDDIFGARGEIDISQYMAGV-----------AWYHCLFPN---------FDDVILEILKCLVE 150 (417)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHTSTTS-S-HHHHHHHH-----------HHHCTTSTT---------HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH-----------HHHHhcCcc---------hHHHHHHHHHHHhc
Confidence 3445555554444333 3345556666666776664 499999973 35899999999977
Q ss_pred -CcccceeeeccccccCCccCCchHHHHH
Q 010967 362 -SPKARTILVNGAVRKGERLVPPSALETL 389 (496)
Q Consensus 362 -~pkArtiLvngavrkgerliPP~sfeil 389 (496)
-||=|-+|+.|+|--|-.-+-...++++
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~ 179 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLC 179 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhc
Confidence 6899999999999999876666555554
No 14
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=31.20 E-value=23 Score=38.87 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=60.9
Q ss_pred HHHHHhhhccccccchhhHHHHHhHHhhhccCCcccCCchhhhccccchhhhhccCCCCCChhhhhhhhhhhccCChhhh
Q 010967 156 SAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVL 235 (496)
Q Consensus 156 aafL~~is~sY~~~pdiQLmRFaDYFgrafs~Vss~qfpW~kMfkespl~klidvPL~hIpe~VyktSvdWI~q~~~~aL 235 (496)
+.||.+|.+-|...|+..=+-+.+||.-.+-. .|=+|+++...+. .+-||-|..-+++.|++.+..+.|
T Consensus 369 s~FL~~I~~af~~~p~l~nLl~~pyF~~~~~~---~~~~~R~vV~~a~--------~~giP~P~~ssalsy~Dsyr~~~l 437 (473)
T COG0362 369 SKFLDKITDAFDENPELANLLLAPYFKSILEE---YQQSLRRVVAYAV--------EAGIPVPAFSSALSYYDSYRTARL 437 (473)
T ss_pred HHHHHHHHHHHhcCcchhhhhcCHHHHHHHHH---HHHHHHHHHHHHH--------hcCCCchHHHHHHHHHHHhhhccc
Confidence 57999999999999999999999999765543 5678988875422 246778888999999999998888
Q ss_pred hHHHHHH
Q 010967 236 GSFVLWC 242 (496)
Q Consensus 236 ~sFVlW~ 242 (496)
.+.++=+
T Consensus 438 paNLiQA 444 (473)
T COG0362 438 PANLIQA 444 (473)
T ss_pred cHHHHHH
Confidence 8855433
No 15
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=29.77 E-value=50 Score=40.57 Aligned_cols=190 Identities=18% Similarity=0.280 Sum_probs=111.3
Q ss_pred ccccchhhHHHHHhHHhhhcc------CCcccCCchhhhccccchhhh-----hccCCC--CCChhhhhhhhhhhccCCh
Q 010967 166 YEDKQDIQMMRFADYFGRAFS------GVTASQFPWMKIFRESTVAKM-----ADIPLS--QIPDVVYKTSIDWINQRSP 232 (496)
Q Consensus 166 Y~~~pdiQLmRFaDYFgrafs------~Vss~qfpW~kMfkespl~kl-----idvPL~--hIpe~VyktSvdWI~q~~~ 232 (496)
+-+.-...|+.|+|-=..--. --...+|-....-||--+... -|+|.. |.|+.++-.-+|+|+....
T Consensus 1626 WNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~ 1705 (2235)
T KOG1789|consen 1626 WNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSA 1705 (2235)
T ss_pred ecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHH
Confidence 345566788888875322100 001123333333444333332 288885 5677889999999988777
Q ss_pred hhhhHHHHHHHHHHHhhhccccccccccccccccccccchHHH-HHHHHHHHhcChh---------HHHhhhhhhhhhcc
Q 010967 233 EVLGSFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVAI-FVALAMVLRRKPD---------VLIGVLPALRENAK 302 (496)
Q Consensus 233 ~aL~sFVlW~ln~IL~dL~~qqgg~kg~k~~~q~~s~ksqVai-fV~LAMVLR~kP~---------vL~~vlptlr~~~k 302 (496)
..+++- -=..|-.|+...+-|+.....|..++++ .+|-| +-+|+=++..+|| -|+..+|-+...-+
T Consensus 1706 ~l~~~~---~~~~~s~d~ie~~~~V~sE~HgD~lPs~-~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr 1781 (2235)
T KOG1789|consen 1706 ELTGAP---KPKAISDDLIEIDWGVGSEAHGDSLPTE-TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLR 1781 (2235)
T ss_pred HhcCCC---CccccccchhhhhcccchhhhcCCCChH-HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHH
Confidence 655331 1111224455555555555555544333 34443 5688999999995 35666666655556
Q ss_pred ccCCCCchHHHHHH------HHhhhcchhhHHHHhhhhhhccccCCCCCcchHHHHHHHHHHHhcCcc
Q 010967 303 YQGQDKLPVIVWMI------AQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPK 364 (496)
Q Consensus 303 yqg~dkLPv~vWmi------aQAsqgDL~vGly~WahnLLP~v~gk~~nPqSrDliLQlvE~iLs~pk 364 (496)
-.+.+++|.++-.+ -|-|..|++-.+. .-.||-++- +.|.+|..+|..+-.+-|+|+
T Consensus 1782 ~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~v--L~~LL~lLH---S~PS~R~~vL~vLYAL~S~~~ 1844 (2235)
T KOG1789|consen 1782 CRKHPKLQILALQVILLATANKECVTDLATCNV--LTTLLTLLH---SQPSMRARVLDVLYALSSNGQ 1844 (2235)
T ss_pred HcCCchHHHHHHHHHHHHhcccHHHHHHHhhhH--HHHHHHHHh---cChHHHHHHHHHHHHHhcCcH
Confidence 67888888776433 2445666655441 223444443 589999999998888777654
No 16
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=29.49 E-value=2.3e+02 Score=31.47 Aligned_cols=175 Identities=16% Similarity=0.160 Sum_probs=97.7
Q ss_pred ChhhHHHHHHhhhccc---cccchhhHHHHHhHHhhhccCCcccCCchhhhccccchhhhhccCCCCCChhhhhhhhhhh
Q 010967 151 DATDLSAFLIDISGTY---EDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWI 227 (496)
Q Consensus 151 D~sdLaafL~~is~sY---~~~pdiQLmRFaDYFgrafs~Vss~qfpW~kMfkespl~klidvPL~hIpe~VyktSvdWI 227 (496)
|..++......+...- .....-||.++..=+...-|-.+.. | +..|..++.++--..++.++++=++||
T Consensus 27 d~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~-------~~LV~ail~~~W~~~~~~~v~~y~~Fl 98 (563)
T PF05327_consen 27 DSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-C-------KQLVEAILSLNWLGRDEDFVEAYIQFL 98 (563)
T ss_dssp --HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-C-------HHHHHHHHT-TGGGS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-H-------HHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 5555555555553222 2222336666665555543332211 1 223444567877788899999999998
Q ss_pred ccCChhhhhHHHHHHHHHHHhhhcccccccccc--ccccccccccchHHHHHHHHHHHhcChhHHHhhhhhhhhhccccC
Q 010967 228 NQRSPEVLGSFVLWCLDSILADVETHNVSSKAS--KKVVQQASSKSQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQG 305 (496)
Q Consensus 228 ~q~~~~aL~sFVlW~ln~IL~dL~~qqgg~kg~--k~~~q~~s~ksqVaifV~LAMVLR~kP~vL~~vlptlr~~~kyqg 305 (496)
...-. +-+.|+--+++.+...+.++....... -....+..-..+|+ -+|.-+||.-|-.-..++|.|..+-=|..
T Consensus 99 ~~Lvs-a~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH--~~L~~Il~lvP~s~~~L~~~l~~~FP~~~ 175 (563)
T PF05327_consen 99 INLVS-AQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVH--DALQKILRLVPTSPSFLIPILVQNFPHKR 175 (563)
T ss_dssp HHHHH-H-GGGHHHHHHHHHHGGGS-HHHHHH---------------HH--HHHHHHHHH-GGGHHHHHHHHHHTS--TT
T ss_pred HHHHH-hhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHH--HHHHHHHHHcCCCHHHHHHHHHHcCcCCC
Confidence 87755 457788888999988888775442221 11111112223343 57888999999999999999876443332
Q ss_pred CCCchHHHHHHHHhhhcchhhHHHHhhhhhhccccCCCCCcchHHHHHHHH
Q 010967 306 QDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLV 356 (496)
Q Consensus 306 ~dkLPv~vWmiaQAsqgDL~vGly~WahnLLP~v~gk~~nPqSrDliLQlv 356 (496)
.++ ..+-.+++|||-+... -|.-|..||++|
T Consensus 176 ~~~-----------------~~~~~Yv~NlL~l~~Y---~P~L~~~Il~lI 206 (563)
T PF05327_consen 176 KSK-----------------DEHVNYVRNLLRLTEY---CPELRSDILSLI 206 (563)
T ss_dssp S-H-----------------HHHHHHHHHHHHHHCC----GGGHHHHHHHH
T ss_pred CCh-----------------HHHHHHHHHHHHHHcc---hHHHHHHHHHHH
Confidence 221 1234688999998774 599998888875
No 17
>PHA00687 hypothetical protein
Probab=27.00 E-value=52 Score=26.46 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=25.9
Q ss_pred CccCCchHHHHHHHHh-----CCCCccch----hhhhhhHhhhhhh
Q 010967 378 ERLVPPSALETLLRLT-----FPTSSARV----KATERFEAIYPTL 414 (496)
Q Consensus 378 erliPP~sfeillR~t-----FP~ssaRv----KateRfeAiyP~L 414 (496)
..-+||.+.-+|-... --..-+|| |||||-...||..
T Consensus 8 qttlppeamrllqqaaqtpitradplarvkaiekatervkrqyphf 53 (56)
T PHA00687 8 QTTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKRQYPHF 53 (56)
T ss_pred cccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHHhcchh
Confidence 4457888877776652 22446787 5699999999964
No 18
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=26.13 E-value=47 Score=35.21 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhccCCCcccCCCCCCCCCCCchh
Q 010967 70 LEQQAEERHLRIIGARQAALSAAASESAPARSKHRSDDEYDEDSDA 115 (496)
Q Consensus 70 le~~ae~r~~~~~~a~~~a~~~~~~~~~~~~~~~~~~de~~d~d~~ 115 (496)
+|.+-+||||++ |.|..-+---....+ -+.++||.||.||+
T Consensus 285 ~d~~d~eRRRQ~-alkaL~eRl~~~~~~----p~~~~~~~~~~~d~ 325 (326)
T KOG2890|consen 285 LDPKDAERRRQL-ALKALEERLKKTRTA----PVASYDEWDDGDDD 325 (326)
T ss_pred CChhHHHHHHHH-HHHHHHHHhcCcccC----ccccccchhhcCCC
Confidence 345556777654 333333322222233 34455666555543
No 19
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=24.26 E-value=2.3e+02 Score=25.62 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=6.7
Q ss_pred CCCCCCCCCchhH
Q 010967 104 RSDDEYDEDSDAD 116 (496)
Q Consensus 104 ~~~de~~d~d~~~ 116 (496)
.++|||||++|+.
T Consensus 66 ldg~deddaede~ 78 (96)
T PF15387_consen 66 LDGDDEDDAEDEN 78 (96)
T ss_pred ccCcccccccccc
Confidence 3455555555543
No 20
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=23.42 E-value=1.1e+02 Score=30.21 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCcccceeeeccccccCCccCCchHHHHHHHHhCCC-------Cccc-------hhhhhhhHhhhhhhhHH
Q 010967 352 ILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPT-------SSAR-------VKATERFEAIYPTLKEV 417 (496)
Q Consensus 352 iLQlvE~iLs~pkArtiLvngavrkgerliPP~sfeillR~tFP~-------ssaR-------vKateRfeAiyP~LKev 417 (496)
|-+++..+++||+-|.++|-| ++...-++-+||..|.+.=-.. .+++ -.|.+||....
T Consensus 55 IEKvI~NvisNpnIRflilcG--~Ev~GH~~Gqsl~aLh~NGid~~grIiGa~GaiPfleNi~~~aV~rFq~qV------ 126 (176)
T PF04208_consen 55 IEKVIANVISNPNIRFLILCG--SEVKGHLTGQSLLALHENGIDEDGRIIGAKGAIPFLENIPREAVERFQQQV------ 126 (176)
T ss_pred HHHHHHHHhcCCCceEEEEec--CccCCCcchHHHHHHHHcCCCCCCCCccCCCCcchhhcCCHHHHHHHHHhe------
Confidence 778999999999999999999 3445689999999999984421 1111 16899998654
Q ss_pred HhcCCCCchhHHHHHHHHHHHHHH
Q 010967 418 ALAGVPGSKAMKQVSLQILSFAIK 441 (496)
Q Consensus 418 ALaG~~gskamkqv~qqif~~slk 441 (496)
-|+-.-|.+=+..+...|=.+.-|
T Consensus 127 elVd~ig~eD~~~I~~~I~e~~~k 150 (176)
T PF04208_consen 127 ELVDMIGEEDPEAIQAKIKECISK 150 (176)
T ss_pred EEEeeecCCCHHHHHHHHHHHHhc
Confidence 333334444444444455555444
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=22.70 E-value=1.2e+02 Score=36.59 Aligned_cols=9 Identities=22% Similarity=0.198 Sum_probs=4.5
Q ss_pred ccccchhhH
Q 010967 166 YEDKQDIQM 174 (496)
Q Consensus 166 Y~~~pdiQL 174 (496)
|.+..|-|.
T Consensus 970 ~~~~~ds~~ 978 (1018)
T KOG2002|consen 970 SDSDDDSQD 978 (1018)
T ss_pred CCccccccc
Confidence 444555554
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=22.07 E-value=51 Score=40.97 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=14.9
Q ss_pred CCCchHHHHHHHHhhhcchhhHHHHhhhhhhccc
Q 010967 306 QDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIV 339 (496)
Q Consensus 306 ~dkLPv~vWmiaQAsqgDL~vGly~WahnLLP~v 339 (496)
+-.+|+-+||.+ |+.+-...|-|..
T Consensus 2020 e~ai~fs~lmra---------gcDile~m~Rp~m 2044 (3015)
T KOG0943|consen 2020 EKAIPFSNLMRA---------GCDILEAMLRPGM 2044 (3015)
T ss_pred hhcccHHHHHHH---------HHHHHHhccCcch
Confidence 445788888865 4455555555543
No 23
>PLN02705 beta-amylase
Probab=21.49 E-value=1.4e+02 Score=34.62 Aligned_cols=14 Identities=50% Similarity=0.489 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q 010967 76 ERHLRIIGARQAAL 89 (496)
Q Consensus 76 ~r~~~~~~a~~~a~ 89 (496)
|||||.+++|+-|-
T Consensus 92 er~rrai~~ki~ag 105 (681)
T PLN02705 92 ERHRRAITSRMLAG 105 (681)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999998774
Done!