Query 010967
Match_columns 496
No_of_seqs 43 out of 45
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 18:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tj1_A RNA polymerase I-specif 26.1 2.8E+02 0.0097 30.4 10.0 121 203-359 137-259 (649)
2 4g9j_C Synthetic peptide, seri 21.9 32 0.0011 23.1 1.1 18 134-151 7-24 (26)
3 2wp7_A PPPDE peptidase domain- 16.6 1.2E+02 0.0042 27.8 4.1 84 139-256 68-157 (168)
4 3aa0_C 21MER peptide from leuc 15.8 40 0.0014 22.8 0.5 14 33-46 9-22 (26)
5 1it2_A Hemoglobin; hagfish, de 15.8 1E+02 0.0035 26.2 3.2 57 140-200 76-136 (146)
6 4e9f_A Methyl-CPG-binding doma 15.2 78 0.0027 28.4 2.4 78 386-464 32-127 (161)
7 4gwg_A 6-phosphogluconate dehy 12.2 35 0.0012 35.5 -0.9 82 150-242 354-446 (484)
8 2rkk_A Vacuolar protein sortin 11.1 1.9E+02 0.0064 26.7 3.7 38 322-359 20-57 (168)
9 4fp9_B Mterf domain-containing 10.9 49 0.0017 32.9 -0.3 59 70-128 274-335 (335)
10 2wk1_A NOVP; transferase, O-me 10.8 2.1E+02 0.0073 27.6 4.1 83 337-425 23-109 (282)
No 1
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=26.07 E-value=2.8e+02 Score=30.39 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=87.5
Q ss_pred chhhhhcc-CCCCCChhhhhhhhhhhccCChhhhhHHHHHHHHHHHhhhccccccccccccccccccccchHHHHHHHHH
Q 010967 203 TVAKMADI-PLSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVAIFVALAM 281 (496)
Q Consensus 203 pl~klidv-PL~hIpe~VyktSvdWI~q~~~~aL~sFVlW~ln~IL~dL~~qqgg~kg~k~~~q~~s~ksqVaifV~LAM 281 (496)
.|..++.+ |.-..++.|++.=+.||.... .+.+.|+-=+++.|...+..+.. .++-+=-+|..
T Consensus 137 LV~aIL~~~~W~~r~~~~v~~Y~~FL~~Lv-Sa~~~yl~~vl~mLV~~F~~~~~---------------~~~~~H~~L~~ 200 (649)
T 3tj1_A 137 LIQSIINFEKWWELPPHTLSKYIYFIKILC-SSIPKWWQDVSMILVSCFILPIK---------------QTVCHHDMLKY 200 (649)
T ss_dssp HHHHHHTCTTGGGSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHGGGSCHH---------------HHHHHHHHHHH
T ss_pred HHHHHhCCchhccCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhccCCCc---------------ccHHHHHHHHH
Confidence 45556799 999999999999999998774 36667777777777777765311 11224568899
Q ss_pred HHhcChhHHHhhhhhhhhhccccCCCCchHHHHHHHHhhhcchhhHHHHhhhhhhccccCCCCCcchHHHHHHHH-HHH
Q 010967 282 VLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLV-ERI 359 (496)
Q Consensus 282 VLR~kP~vL~~vlptlr~~~kyqg~dkLPv~vWmiaQAsqgDL~vGly~WahnLLP~v~gk~~nPqSrDliLQlv-E~i 359 (496)
+||.-|-.-..++|.|..+--|....+ ..+-.++||||-+.. --|+-|..||+|+ |++
T Consensus 201 Il~lvP~s~~~L~~iL~~~FP~~~~s~-----------------~~~~~Yv~NLLrl~~---Y~PeL~~~Il~LIierl 259 (649)
T 3tj1_A 201 FLRMIPSSMGFIDTYLAKFFPNKNDTR-----------------RKLVNYTSNLLKLRG---YCSELGFQIWSLLIEKI 259 (649)
T ss_dssp HHHHCGGGHHHHHHHHHHTCCCTTSCH-----------------HHHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHhCCCCCCch-----------------hHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHH
Confidence 999999999999998876544443332 234578999998875 2789998888875 444
No 2
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=21.93 E-value=32 Score=23.14 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=14.5
Q ss_pred CCCCCCcccHHHHHhcCC
Q 010967 134 KKPKKPKITVAEAAAKLD 151 (496)
Q Consensus 134 kk~kkpKvsvaeAAakID 151 (496)
.|.|...||++|||.-|.
T Consensus 7 rkrknarvtfaeaaeii~ 24 (26)
T 4g9j_C 7 RKRKNARVTFAEAAEIIX 24 (26)
T ss_pred cccccceeeHHHhhhHhh
Confidence 455668999999998775
No 3
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=16.56 E-value=1.2e+02 Score=27.82 Aligned_cols=84 Identities=15% Similarity=0.334 Sum_probs=57.9
Q ss_pred CcccHHHHHhcCChhhHHHHHHhhhcc-ccccchhhHH-----HHHhHHhhhccCCcccCCchhhhccccchhhhhccCC
Q 010967 139 PKITVAEAAAKLDATDLSAFLIDISGT-YEDKQDIQMM-----RFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPL 212 (496)
Q Consensus 139 pKvsvaeAAakID~sdLaafL~~is~s-Y~~~pdiQLm-----RFaDYFgrafs~Vss~qfpW~kMfkespl~klidvPL 212 (496)
|.-|+.--.-.++.+++.+||.+++.. |... .-.|+ -|.|.|-..|..
T Consensus 68 ~resi~lG~T~~~~~~~~~~l~~l~~~~~~g~-~Y~Ll~~NCNhFs~~l~~~L~g------------------------- 121 (168)
T 2wp7_A 68 PDSVVDVGNTEVTEEIFLEYLSSLGESLFRGE-AYNLFEHNCNTFSNEVAQFLTG------------------------- 121 (168)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHTTTCSGG-GCBTTTBSHHHHHHHHHHHHHS-------------------------
T ss_pred eEEEEECCCccCCHHHHHHHHHHhhhccCCcc-cCchhhhccchhHHHHHHHhcC-------------------------
Confidence 344444444567889999999999987 7533 33343 277777666553
Q ss_pred CCCChhhhhhhhhhhccCChhhhhHHHHHHHHHHHhhhcccccc
Q 010967 213 SQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNVS 256 (496)
Q Consensus 213 ~hIpe~VyktSvdWI~q~~~~aL~sFVlW~ln~IL~dL~~qqgg 256 (496)
++|| +||+..+-+.|++=+.-.+.++|..+..+-+|
T Consensus 122 k~IP--------~wInrl~~~vl~tp~G~~l~~~l~~~~~~~~~ 157 (168)
T 2wp7_A 122 RKIP--------SYITDLPSEVLSTPFGQALRPFLDSIQIQPPG 157 (168)
T ss_dssp CCCC--------HHHHTHHHHHHTSHHHHHHHHHHTTCCCCCTT
T ss_pred CCCc--------HHHHHHHHHHhcCcHHHHHHHHHHHHhhCCCC
Confidence 3677 78888888888877777888888777665433
No 4
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=15.83 E-value=40 Score=22.76 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.1
Q ss_pred hhhhhcCCCCCCCC
Q 010967 33 YAKRQRKTKPGADP 46 (496)
Q Consensus 33 ~~Kr~rk~~~~~~~ 46 (496)
.|||++||+|..+.
T Consensus 9 rpkr~kkqqps~~t 22 (26)
T 3aa0_C 9 RPKRNKKQQPTQAX 22 (26)
T ss_pred CcchhhccCCcccc
Confidence 58999999987543
No 5
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=15.82 E-value=1e+02 Score=26.16 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=42.3
Q ss_pred cccHHHHHhcCC-hhhHHHHHHhhhccccc---cchhhHHHHHhHHhhhccCCcccCCchhhhcc
Q 010967 140 KITVAEAAAKLD-ATDLSAFLIDISGTYED---KQDIQMMRFADYFGRAFSGVTASQFPWMKIFR 200 (496)
Q Consensus 140 KvsvaeAAakID-~sdLaafL~~is~sY~~---~pdiQLmRFaDYFgrafs~Vss~qfpW~kMfk 200 (496)
.-++.+++..|| ++.|..+|.++...+.. ...-+.--|-+++-.++..+ ++|.|.+.
T Consensus 76 ~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~----lgW~k~~~ 136 (146)
T 1it2_A 76 FNKVNEIINSMDNQEEIIKSLKDLSQKHKTVFKVDSIWFKELSSIFVSTIDGG----AEFEKLFS 136 (146)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHHTTCC----HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHh----CCHHHHHH
Confidence 346788888888 56699999999887743 55666777778887777764 55888764
No 6
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=15.23 E-value=78 Score=28.45 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHHHHHHhCC--CCccch-hhhhhhHhhhhhhhHHHhcCC--------------CCchhHHHHHHHHHHHHHHHhccCCc
Q 010967 386 LETLLRLTFP--TSSARV-KATERFEAIYPTLKEVALAGV--------------PGSKAMKQVSLQILSFAIKFAGESTP 448 (496)
Q Consensus 386 feillR~tFP--~ssaRv-KateRfeAiyP~LKevALaG~--------------~gskamkqv~qqif~~slk~age~np 448 (496)
|++|+-.+.= +.-++| ++++||.+.||++..++-+.. ..++.++..++.++|-..+-.- .-|
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~-~Lp 110 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPI-ELH 110 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGG-GST
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhh-cCC
Confidence 6666665443 333344 789999999999988765531 1345556666666553322110 122
Q ss_pred hhhH-hhHhhhhhhccc
Q 010967 449 DLSN-EAAGIFIWCLTQ 464 (496)
Q Consensus 449 ~Lak-Ea~~i~IWcLtq 464 (496)
..=. -|-++.|.|..+
T Consensus 111 GVG~yTAdav~~F~~~e 127 (161)
T 4e9f_A 111 GIGKYGNDSYRIFCVNE 127 (161)
T ss_dssp TCCHHHHHHHHHHTSSC
T ss_pred CchHHHHHHHHHHHCCC
Confidence 2223 345678888774
No 7
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=12.24 E-value=35 Score=35.53 Aligned_cols=82 Identities=18% Similarity=0.383 Sum_probs=61.3
Q ss_pred CChhhHH-----------HHHHhhhccccccchhhHHHHHhHHhhhccCCcccCCchhhhccccchhhhhccCCCCCChh
Q 010967 150 LDATDLS-----------AFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDV 218 (496)
Q Consensus 150 ID~sdLa-----------afL~~is~sY~~~pdiQLmRFaDYFgrafs~Vss~qfpW~kMfkespl~klidvPL~hIpe~ 218 (496)
+|..+++ .||.+|.+.|...|+..-+-+.|||...+.. .|=.|+++....-. ..||-|
T Consensus 354 l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~~~f~~~~~~---~~~~~r~vv~~a~~--------~gip~P 422 (484)
T 4gwg_A 354 LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVEN---CQDSWRRAVSTGVQ--------AGIPMP 422 (484)
T ss_dssp CCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGSHHHHHHHHH---HHHHHHHHHHHHHH--------HTCCCH
T ss_pred CCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcCHHHHHHHHH---HHHHHHHHHHHHHH--------cCCCHH
Confidence 7777774 6999999999999998888889999876664 45589888765322 356778
Q ss_pred hhhhhhhhhccCChhhhhHHHHHH
Q 010967 219 VYKTSIDWINQRSPEVLGSFVLWC 242 (496)
Q Consensus 219 VyktSvdWI~q~~~~aL~sFVlW~ 242 (496)
+.-+|..+++.+--+.|.+-++=+
T Consensus 423 ~~s~al~y~~~~r~~~lpanliqa 446 (484)
T 4gwg_A 423 CFTTALSFYDGYRHEMLPASLIQA 446 (484)
T ss_dssp HHHHHHHHHHHHTCSCCTHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHH
Confidence 888999888877666666643333
No 8
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=11.09 E-value=1.9e+02 Score=26.75 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred cchhhHHHHhhhhhhccccCCCCCcchHHHHHHHHHHH
Q 010967 322 GELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERI 359 (496)
Q Consensus 322 gDL~vGly~WahnLLP~v~gk~~nPqSrDliLQlvE~i 359 (496)
||.+|+-||-.|.+=-++......|+.+..+++|++.+
T Consensus 20 ~~PvVaYyCrlYave~iL~~~~~s~e~~~~l~~LlD~L 57 (168)
T 2rkk_A 20 GLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTI 57 (168)
T ss_dssp TBHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
No 9
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=10.94 E-value=49 Score=32.94 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhccCCCccc--CCCCCCCCCCCchhHHHh-hhcCCCCCC
Q 010967 70 LEQQAEERHLRIIGARQAALSAAASESAPARS--KHRSDDEYDEDSDADVAA-AENGKAEEP 128 (496)
Q Consensus 70 le~~ae~r~~~~~~a~~~a~~~~~~~~~~~~~--~~~~~de~~d~d~~~~~~-~~~~~~~e~ 128 (496)
++++.|+-+++-.+.+.+..+..++++.-.-. ..+++||+||+|++.-+. +.+-.-||.
T Consensus 274 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (335)
T 4fp9_B 274 LAREEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDDEEE 335 (335)
T ss_dssp HHHHHHCC------------------------------------------------------
T ss_pred HHhhhhcccccchhhhhhcccccccccccccccCccccCCCccccccccccccccccccccC
No 10
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=10.76 E-value=2.1e+02 Score=27.60 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred ccccCCCCCcchHHHHHHHHHHHhcCcccceeeeccccccCCcc-CCchHHHHHHHHh---CCCCccchhhhhhhHhhhh
Q 010967 337 PIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERL-VPPSALETLLRLT---FPTSSARVKATERFEAIYP 412 (496)
Q Consensus 337 P~v~gk~~nPqSrDliLQlvE~iLs~pkArtiLvngavrkgerl-iPP~sfeillR~t---FP~ssaRvKateRfeAiyP 412 (496)
|.+-.+.-.++.+++.|+|+.++|.+.--.-...+| .+ +.+..|+=-+|.. .|...--.-..+|...+|=
T Consensus 23 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~r~~g~~~~~~~~tmv~~~r~~~L~~ 96 (282)
T 2wk1_A 23 PIVETAKETNSDSSLYLDLMIKVLAGTVYEDPAHRE------NFSHRDSTYREEVRNEGRDWPANAHTMIGIKRLENIRQ 96 (282)
T ss_dssp -----------CHHHHHHHHHHHHHTTTTTCCBCCC-------------CCCHHHHHTTCSCBSSCSCSSHHHHHHHHHH
T ss_pred cccccCCCCCccHHHHHHHHHHHHhCccccCCCCCC------ccccccccccHHHHhccccCCcccccccCHHHHHHHHH
Q ss_pred hhhHHHhcCCCCc
Q 010967 413 TLKEVALAGVPGS 425 (496)
Q Consensus 413 ~LKevALaG~~gs 425 (496)
+++.+.-.+-||.
T Consensus 97 l~~~v~~~~~pg~ 109 (282)
T 2wk1_A 97 CVEDVIGNNVPGD 109 (282)
T ss_dssp HHHHHHHTTCCCE
T ss_pred HHHHHHhcCCCCc
Done!