BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010968
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H00|A Chain A, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|B Chain B, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|C Chain C, Human Methyltransferase 10 Domain Containing Protein
Length = 254
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 162/305 (53%), Gaps = 64/305 (20%)
Query: 49 GRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIP 108
GR +++ D A R LT LL D GL+ IP +L PTVP R NYIHW+EDL+
Sbjct: 3 GRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ--- 59
Query: 109 TTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168
S +G DIGTGA+CIYPLLGA+L GW F+ +++ D+ +A+KNV+ N ++S+L
Sbjct: 60 -DSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDL 117
Query: 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228
I++ KV Q++L ++++ES +
Sbjct: 118 IKVVKVP--------QKTLLMDALKEESEI------------------------------ 139
Query: 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA-GLN--------PKTSCGGTPEEMVCSGGE 279
+DFC+CNPPFF + EA G+N P + G E++ GGE
Sbjct: 140 ------------IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGE 187
Query: 280 RAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339
F+ RII DS+ LK+ RWY+ M+G+K +L L +LR GV V TEF QG+T RW
Sbjct: 188 LEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWA 247
Query: 340 LAWSF 344
LAWSF
Sbjct: 248 LAWSF 252
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 141 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 196
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 197 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 224
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 16/98 (16%)
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQ--GQTCRWGLAW 342
R+ DSV F+ Y + + L L+++L+++G T V TTE ++ G R+G+
Sbjct: 128 RVSIDSVT--SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGV-- 183
Query: 343 SFVPPARKIISPHVAEKKNLSFMLEGVQRQFSALDVLQ 380
+ +S +V +N+ LEG +R+ L++L+
Sbjct: 184 ------EEFVSDNVVILRNV---LEG-ERRRRTLEILK 211
>pdb|3C5O|A Chain A, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
pdb|3C5O|B Chain B, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
pdb|3C5O|C Chain C, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
pdb|3C5O|D Chain D, Crystal Structure Of The Conserved Protein Of Unknown
Function Rpa1785 From Rhodopseudomonas Palustris
Length = 157
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 96 HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVG 144
H L + + T+R GD +IGTG I P+LG + G G
Sbjct: 2 HXTPTLETKYVFTITARIGDVTSAGEIGTGVRRIIPILGGEVKGEGISG 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,189,265
Number of Sequences: 62578
Number of extensions: 584265
Number of successful extensions: 1387
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 31
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)